-- dump date   	20140620_070454
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004547390.1	SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: smd:Smed_0002 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal
YP_004547391.1	PFAM: YCII-related; KEGG: smd:Smed_0003 DGPFAETKE family protein
YP_004547392.1	KEGG: smd:Smed_0004 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004547393.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0005 activator of HSP90 ATPase 1 family protein
YP_004547394.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0006 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004547395.1	TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: smd:Smed_0007 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_004547396.1	HAMAP: Nucleoside-triphosphatase; KEGG: smd:Smed_0008 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein
YP_004547397.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0009 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004547398.1	PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: smd:Smed_0010 ribonuclease PH
YP_004547399.1	TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: smd:Smed_0011 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal
YP_004547400.1	KEGG: smd:Smed_0012 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_004547401.1	KEGG: smd:Smed_0013 PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2
YP_004547402.1	KEGG: smd:Smed_0014 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein
YP_004547403.1	KEGG: smd:Smed_0015 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma factor 54, DNA-binding
YP_004547404.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0016 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547405.1	PFAM: Organic solvent tolerance-like, N-terminal; KEGG: smd:Smed_0017 OstA family protein
YP_004547406.1	PFAM: Lipopolysccharide assembly, LptC-related; KEGG: smd:Smed_0018 hypothetical protein
YP_004547407.1	KEGG: smd:Smed_0020 signal peptide peptidase SppA, 36K type; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49
YP_004547408.1	SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, beta subunit; KEGG: smd:Smed_0021 integration host factor subunit beta; HAMAP: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein
YP_004547409.1	KEGG: smd:Smed_0022 hypothetical protein
YP_004547410.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: smd:Smed_0023 carbon monoxide dehydrogenase subunit G
YP_004547411.1	KEGG: smd:Smed_0024 hypothetical protein
YP_004547412.1	KEGG: smd:Smed_0025 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_004547413.1	TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: smd:Smed_0026 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II
YP_004547414.1	KEGG: smd:Smed_0027 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain
YP_004547415.1	KEGG: smd:Smed_0028 hypothetical protein
YP_004547416.1	KEGG: smd:Smed_0029 malic enzyme; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SMART: Malic enzyme, NAD-binding
YP_004547417.1	SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: smd:Smed_0030 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp
YP_004547418.1	KEGG: smd:Smed_0031 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyl transferase domain; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain
YP_004547419.1	KEGG: smd:Smed_0032 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN
YP_004547420.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c00340 predicted glyoxalase/bleomycin resistance protein/dioxygenase
YP_004547421.1	TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: smd:Smed_0034 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_004547422.1	KEGG: smd:Smed_0035 UspA domain-containing protein; manually curated; PFAM: UspA
YP_004547423.1	KEGG: smd:Smed_0036 scaffold protein Nfu/NifU; PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; SMART: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal
YP_004547424.1	KEGG: smd:Smed_0037 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease
YP_004547425.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0038 GCN5-related N-acetyltransferase
YP_004547426.1	KEGG: smd:Smed_0039 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004547427.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; KEGG: smd:Smed_0040 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM
YP_004547428.1	PFAM: PhoH-like protein; KEGG: smd:Smed_0041 PhoH family protein
YP_004547429.1	TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: smd:Smed_0042 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted
YP_004547430.1	PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: smd:Smed_0043 CBS domain-containing protein
YP_004547431.1	TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: smd:Smed_0044 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004547432.1	KEGG: smd:Smed_0045 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004547433.1	TIGRFAM: S-adenosylmethionine synthetase; KEGG: smd:Smed_0046 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal
YP_004547434.1	PFAM: tRNA (guanine-N-7) methyltransferase; KEGG: smd:Smed_0047 tRNA (guanine-N(7)-)-methyltransferase
YP_004547435.1	PFAM: Protein of unknown function DUF1150; KEGG: smd:Smed_0048 hypothetical protein
YP_004547436.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_0049 heat shock protein HSP20
YP_004547437.1	KEGG: smd:Smed_0050 inosine/uridine-preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase domain
YP_004547438.1	KEGG: smd:Smed_0051 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004547439.1	KEGG: smd:Smed_0052 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004547440.1	PFAM: DNA recombination RmuC; KEGG: smd:Smed_0053 hypothetical protein
YP_004547441.1	TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: smd:Smed_0054 peptide deformylase; PFAM: Formylmethionine deformylase
YP_004547442.1	PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: smd:Smed_0055 methionyl-tRNA formyltransferase
YP_004547443.1	TIGRFAM: Pseudouridine synthase I, TruA; KEGG: rhi:NGR_c00590 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain
YP_004547444.1	KEGG: smd:Smed_0060 hypothetical protein
YP_004547445.1	KEGG: smd:Smed_0061 succinyl-diaminopimelate desuccinylase; TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004547446.1	KEGG: smd:Smed_0062 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_004547447.1	KEGG: smd:Smed_0063 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004547448.1	KEGG: smd:Smed_0064 alpha/beta hydrolase domain-containing protein
YP_004547449.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0065 LysR family transcriptional regulator
YP_004547450.1	KEGG: smd:Smed_0067 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004547451.1	KEGG: mbr:MONBRDRAFT_39307 hypothetical protein
YP_004547452.1	PFAM: Protein of unknown function DUF805; KEGG: smd:Smed_0068 hypothetical protein
YP_004547453.1	TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: smd:Smed_0069 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
YP_004547454.1	PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; KEGG: smd:Smed_0070 hypothetical protein
YP_004547455.1	TIGRFAM: Pyrimidine 5-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: smd:Smed_0071 pyrimidine 5'-nucleotidase
YP_004547456.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0072 hypothetical protein
YP_004547457.1	TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding; KEGG: smd:Smed_0073 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004547458.1	KEGG: smd:Smed_0074 hypothetical protein
YP_004547459.1	TIGRFAM: Acetylglutamate kinase; KEGG: smd:Smed_0075 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004547460.1	PFAM: Anti-sigma K factor RskA; KEGG: smd:Smed_0076 hypothetical protein
YP_004547461.1	TIGRFAM: Methionine sulphoxide reductase B; Twin-arginine translocation pathway, signal sequence; KEGG: rhi:NGR_c00780 putative methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B
YP_004547462.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: smd:Smed_0077 hypothetical protein
YP_004547463.1	TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: smd:Smed_0078 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related
YP_004547465.1	TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; HAMAP: Membrane insertion protein, OxaA/YidC, bacterial; KEGG: smd:Smed_0079 putative inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC
YP_004547466.1	TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: smd:Smed_0080 ribonuclease P; PFAM: Ribonuclease P
YP_004547467.1	PFAM: Ribosomal protein L34; manually curated; TIGRFAM: Ribosomal protein L34; KEGG: smd:Smed_0081 50S ribosomal protein L34; HAMAP: Ribosomal protein L34
YP_004547468.1	KEGG: smd:Smed_0082 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004547469.1	PFAM: SNARE associated Golgi protein; KEGG: smd:Smed_0083 SNARE associated Golgi protein
YP_004547470.1	KEGG: smd:Smed_0084 pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004547471.1	KEGG: smd:Smed_0085 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004547472.1	KEGG: btr:Btr_0514 hypothetical protein
YP_004547473.1	PFAM: Protein of unknown function DUF497; KEGG: rlg:Rleg_6975 protein of unknown function DUF497
YP_004547474.1	PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: atu:Atu4427 replicative DNA helicase
YP_004547475.1	PFAM: Tetracycline transcriptional regulator, TetR, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rle:RL1054 TetR family transcriptional regulator
YP_004547476.1	PFAM: Endoribonuclease L-PSP; KEGG: rlt:Rleg2_0717 endoribonuclease L-PSP
YP_004547477.1	KEGG: pfl:PFL_2306 hypothetical protein
YP_004547478.1	KEGG: ret:RHE_CH00425 L-lactate dehydrogenase (cytochrome) protein; PFAM: FMN-dependent dehydrogenase
YP_004547479.1	KEGG: mes:Meso_1513 hypothetical protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; Alpha-galactosidase, NEW3 domain
YP_004547480.1	KEGG: mes:Meso_1515 hypothetical protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11
YP_004547481.1	KEGG: mes:Meso_1518 hypothetical protein
YP_004547482.1	PFAM: YadA-like, C-terminal; Hep/Hag; Haemagluttinin motif; KEGG: ara:Arad_8991 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein
YP_004547483.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_0087 invasion associated locus B family protein
YP_004547484.1	KEGG: smd:Smed_0088 putative signal peptide protein
YP_004547485.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_0089 YbaK/prolyl-tRNA synthetase associated region
YP_004547486.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rhi:NGR_c00940 hypothetical protein contains isoprenylcysteine carboxyl methyltransferase domain
YP_004547488.1	PFAM: Protein of unknown function DUF1810; KEGG: smd:Smed_0090 hypothetical protein
YP_004547489.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: rhi:NGR_c00960 aldo/keto reductase
YP_004547490.1	PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: smd:Smed_0091 hypothetical protein
YP_004547491.1	TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; KEGG: smd:Smed_0092 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain
YP_004547492.1	PFAM: Uncharacterised protein family UPF0153; KEGG: smd:Smed_0093 hypothetical protein
YP_004547493.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0094 metallophosphoesterase
YP_004547494.1	KEGG: smd:Smed_0095 Sel1 domain-containing protein
YP_004547495.1	PFAM: FecR protein; KEGG: smd:Smed_0096 hypothetical protein
YP_004547496.1	KEGG: smd:Smed_0097 putative CHASE2 sensor protein; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004547497.1	KEGG: smd:Smed_0098 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain
YP_004547498.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_0099 DoxX family protein
YP_004547499.1	PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU; KEGG: smd:Smed_0100 RbsD or FucU transport
YP_004547500.1	PFAM: ROK; KEGG: smd:Smed_0101 ROK family protein
YP_004547501.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_0102 periplasmic binding protein/LacI transcriptional regulator
YP_004547502.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0103 monosaccharide-transporting ATPase
YP_004547503.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0104 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547504.1	PFAM: Phosphoribulokinase/uridine kinase; KEGG: smd:Smed_0105 putative fructose transport system kinase
YP_004547505.1	PFAM: Amidohydrolase 2; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: smd:Smed_0106 dihydroorotase
YP_004547506.1	TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: rhi:NGR_c01150 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004547507.1	KEGG: smd:Smed_0108 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004547508.1	KEGG: smd:Smed_0109 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI)
YP_004547509.1	KEGG: smd:Smed_0110 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004547510.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bid:Bind_2119 major facilitator transporter
YP_004547511.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0111 hypothetical protein
YP_004547512.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smd:Smed_0112 CDP-alcohol phosphatidyltransferase
YP_004547513.1	KEGG: smd:Smed_0113 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004547514.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: smd:Smed_0114 phosphatidate cytidylyltransferase
YP_004547515.1	PFAM: Integrase, catalytic core, phage; KEGG: rhi:NGR_c01260 phage integrase-like protein contains catalytic core domain
YP_004547516.1	manually curated; KEGG: rhi:NGR_c01270 hypothetical protein
YP_004547517.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004547518.1	PFAM: Integrase, catalytic core; KEGG: bja:bll5000 putative transposase
YP_004547519.1	KEGG: rhi:NGR_c01280 hypothetical protein
YP_004547520.1	KEGG: rsc:RCFBP_11850 putative type III effector (HLK1)
YP_004547521.1	KEGG: rhi:NGR_c01290 hypothetical protein
YP_004547522.1	KEGG: rhi:NGR_c01300 hypothetical protein
YP_004547523.1	KEGG: rec:RHECIAT_CH0000488 hypothetical protein
YP_004547524.1	KEGG: nfa:nfa54710 putative acyltransferase
YP_004547525.1	KEGG: rhi:NGR_c01310 hypothetical protein
YP_004547526.1	KEGG: rhi:NGR_c01320 hypothetical protein
YP_004547527.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: rlg:Rleg_5723 transcriptional regulator, XRE family; SMART: Helix-turn-helix type 3
YP_004547528.1	KEGG: ppm:PPSC2_c3516 hypothetical protein
YP_004547529.1	KEGG: rhi:NGR_c01370 hypothetical protein
YP_004547530.1	KEGG: bxe:Bxe_A2427 hypothetical protein
YP_004547531.1	PFAM: RecF/RecN/SMC; KEGG: rhi:NGR_c01380 hypothetical protein
YP_004547532.1	KEGG: neu:NE2521 hypothetical protein; manually curated; PFAM: DNA recombination-mediator protein A
YP_004547533.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: neu:NE2520 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004547534.1	KEGG: rle:pRL80100 hypothetical protein
YP_004547535.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: smd:Smed_0115 2-nitropropane dioxygenase NPD
YP_004547536.1	KEGG: smd:Smed_0116 hypothetical protein
YP_004547537.1	KEGG: smd:Smed_0117 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_004547538.1	TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; KEGG: smd:Smed_0118 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004547539.1	KEGG: smd:Smed_0119 putative phosphate-binding periplasmic protein
YP_004547540.1	KEGG: smd:Smed_0120 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: ABC transporter, phosphate permease, PstC; Binding-protein-dependent transport systems inner membrane component
YP_004547541.1	KEGG: smd:Smed_0121 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004547542.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: rhi:NGR_c01470 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004547543.1	KEGG: smd:Smed_0123 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU
YP_004547544.1	TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: smd:Smed_0124 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004547545.1	PFAM: GcrA cell cycle regulator; KEGG: smd:Smed_0126 GcrA cell cycle regulator
YP_004547546.1	TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: smd:Smed_0127 acetylornithine transaminase protein; PFAM: Aminotransferase class-III
YP_004547547.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: smd:Smed_0128 ornithine carbamoyltransferase
YP_004547548.1	PFAM: Heat shock protein Hsp33 protein; KEGG: smd:Smed_0129 HSP33-like chaperonin
YP_004547549.1	KEGG: smd:Smed_0130 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain
YP_004547550.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smd:Smed_0132 CDP-alcohol phosphatidyltransferase
YP_004547551.1	KEGG: smd:Smed_0133 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004547552.1	KEGG: smd:Smed_0134 2'-deoxycytidine 5'-triphosphate deaminase
YP_004547553.1	manually curated; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_0135 extracellular solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_004547554.1	PFAM: Fatty acid hydroxylase; KEGG: smd:Smed_0136 hypothetical protein
YP_004547555.1	KEGG: smd:Smed_0137 hypothetical protein
YP_004547556.1	KEGG: smd:Smed_0138 hypothetical protein
YP_004547557.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: smd:Smed_0139 putative phage repressor
YP_004547558.1	PFAM: Sodium/calcium exchanger membrane region; KEGG: smd:Smed_0140 sodium/calcium exchanger membrane region
YP_004547559.1	PFAM: Helix-turn-helix, HxlR type; KEGG: smd:Smed_0141 HxlR family transcriptional regulator
YP_004547560.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0142 activator of HSP90 ATPase 1 family protein
YP_004547561.1	KEGG: smd:Smed_0144 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core
YP_004547562.1	TIGRFAM: Thiolase; KEGG: smd:Smed_0145 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004547563.1	KEGG: smd:Smed_0146 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal, bacteria
YP_004547564.1	KEGG: smd:Smed_0147 peptidoglycan binding domain-containing protein; PFAM: Peptidoglycan binding-like; Sel1-like; SMART: Sel1-like
YP_004547565.1	PFAM: Protein of unknown function DUF81; KEGG: rhi:NGR_c01710 putative transmembrane protein
YP_004547566.1	KEGG: smd:Smed_0149 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02186-related, transmembrane; PFAM: Conserved hypothetical protein CHP02186-related, transmembrane
YP_004547567.1	PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: smd:Smed_0151 AsnC family transcriptional regulator
YP_004547568.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0152 metallophosphoesterase
YP_004547569.1	KEGG: smd:Smed_0153 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004547570.1	KEGG: smd:Smed_0154 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004547571.1	KEGG: smd:Smed_0155 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004547572.1	PFAM: Protein of unknown function DUF161; KEGG: smd:Smed_0156 hypothetical protein
YP_004547573.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_0157 methyltransferase type 12
YP_004547574.1	KEGG: smd:Smed_0158 hypothetical protein
YP_004547575.1	PFAM: CAP domain; KEGG: smd:Smed_0159 SCP-like extracellular
YP_004547576.1	KEGG: smd:Smed_0160 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein
YP_004547577.1	TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: smd:Smed_0161 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2
YP_004547578.1	PFAM: Protein of unknown function DUF952; KEGG: rhi:NGR_c01820 hypothetical protein
YP_004547579.1	KEGG: smd:Smed_0163 putative signal peptide protein
YP_004547580.1	KEGG: rhi:NGR_c01840 predicted two-component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004547581.1	KEGG: smd:Smed_0165 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; PAS
YP_004547582.1	KEGG: smd:Smed_0166 large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel
YP_004547583.1	KEGG: smd:Smed_0167 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004547584.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_0168 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004547585.1	TIGRFAM: Isochorismate pyruvate-lyase, salicylic acid biosynthesis; PFAM: Chorismate mutase, type II; KEGG: smd:Smed_0169 chorismate mutase-related enzyme; SMART: Chorismate mutase
YP_004547586.1	KEGG: smd:Smed_0170 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II
YP_004547587.1	PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: smd:Smed_0171 cytochrome bd ubiquinol oxidase subunit I
YP_004547588.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: smd:Smed_0172 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004547589.1	KEGG: smd:Smed_0173 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004547590.1	KEGG: smd:Smed_0174 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004547591.1	KEGG: smd:Smed_0175 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004547592.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_c01960 amino acid ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004547593.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_c01970 putative HTH-type transcriptional regulator, TetR family
YP_004547594.1	KEGG: smd:Smed_0178 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_004547595.1	KEGG: smd:Smed_0179 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_004547596.1	KEGG: smd:Smed_0180 hypothetical protein
YP_004547597.1	KEGG: smd:Smed_0181 bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: SecD export membrane protein; SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_004547598.1	KEGG: smd:Smed_0182 hypothetical protein
YP_004547599.1	KEGG: smd:Smed_0191 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004547600.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: smd:Smed_0192 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core
YP_004547601.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_0193 capsule polysaccharide biosynthesis protein
YP_004547602.1	PFAM: Sulfatase; KEGG: smd:Smed_0194 sulfatase
YP_004547603.1	KEGG: smd:Smed_0195 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004547604.1	KEGG: smd:Smed_0196 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII
YP_004547605.1	PFAM: Beta-ketoacyl synthase, N-terminal; Polyketide synthase, KR; Beta-ketoacyl synthase, C-terminal; Alcohol dehydrogenase, C-terminal; Phosphopantetheine-binding; Acyl transferase; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_0197 beta-ketoacyl synthase; SMART: Polyketide synthase, enoylreductase; Polyketide synthase, acyl transferase domain; Polyketide synthase, dehydratase domain; Polyketide synthase/Fatty acid synthase, KR
YP_004547606.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_0198 polysaccharide export protein
YP_004547607.1	KEGG: smd:Smed_0199 nicotinamidase; PFAM: Isochorismatase-like
YP_004547608.1	PFAM: Nicotinate phosphoribosyltransferase-like; TIGRFAM: Nicotinate phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; KEGG: smd:Smed_0200 nicotinate phosphoribosyltransferase
YP_004547609.1	KEGG: smd:Smed_0201 hypothetical protein
YP_004547610.1	KEGG: smd:Smed_0202 hypothetical protein
YP_004547611.1	KEGG: rhi:NGR_b07180 hypothetical protein
YP_004547612.1	KEGG: rhi:NGR_b08290 hypothetical protein
YP_004547613.1	KEGG: rhi:NGR_b07160 putative copper resistance-related lipoprotein
YP_004547614.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: rhi:NGR_b07150 putative copper-containing oxidase
YP_004547615.1	PFAM: Blue (type 1) copper domain; KEGG: rhi:NGR_b08260 putative copper oxidase, possibly exported
YP_004547616.1	KEGG: rhi:NGR_b08250 hypothetical protein
YP_004547617.1	KEGG: rhi:NGR_b08240 probable membrane-bound adenylate class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004547618.1	PFAM: Integrase, catalytic core, phage; KEGG: sno:Snov_4352 integrase family protein
YP_004547619.1	KEGG: smd:Smed_1679 hypothetical protein
YP_004547620.1	KEGG: bvi:Bcep1808_7495 hypothetical protein
YP_004547621.1	SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: azc:AZC_1013 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal
YP_004547622.1	KEGG: aga:AgaP_AGAP009847 AGAP009847-PA
YP_004547623.1	PFAM: Uncharacterised protein family UPF0335; KEGG: smd:Smed_2680 hypothetical protein
YP_004547624.1	KEGG: smd:Smed_1236 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004547625.1	KEGG: rpt:Rpal_1253 metal dependent phosphohydrolase
YP_004547627.1	KEGG: hse:Hsero_0862 ATP-dependent DNA helicase
YP_004547628.1	KEGG: mlo:mll2137 hypothetical protein
YP_004547629.1	KEGG: mlo:mlr2136 phage repressor protein C; PFAM: Peptidase S24/S26A/S26B, conserved region; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004547630.1	manually curated; KEGG: oan:Oant_0220 hypothetical protein
YP_004547631.1	KEGG: oan:Oant_2320 hypothetical protein
YP_004547633.1	KEGG: aml:100467392 cyclin-dependent kinase 5 activator 2-like
YP_004547634.1	KEGG: ols:Olsu_1171 transcriptional regulator, MarR family
YP_004547635.1	KEGG: mgi:Mflv_5391 heavy metal translocating P-type ATPase
YP_004547636.1	PFAM: Phage P4 alpha, zinc-binding; KEGG: msl:Msil_2200 putative DNA primase
YP_004547637.1	TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: bbt:BBta_6606 putative phage / plasmid primase P4; SMART: Phage/plasmid primase, P4, C-terminal
YP_004547638.1	KEGG: avi:Avi_2306 hypothetical protein
YP_004547639.1	KEGG: smd:Smed_1662 hypothetical protein
YP_004547640.1	KEGG: smd:Smed_1661 hypothetical protein
YP_004547641.1	PFAM: Phage terminase GpA; KEGG: smd:Smed_1660 phage terminase GpA
YP_004547642.1	PFAM: Head-to-tail joining protein W, gpW; KEGG: smd:Smed_1659 hypothetical protein
YP_004547643.1	KEGG: smd:Smed_1658 lambda family phage portal protein; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda
YP_004547644.1	PFAM: Peptidase S49; KEGG: smd:Smed_1657 peptidase S49
YP_004547645.1	KEGG: smd:Smed_1656 hypothetical protein
YP_004547646.1	KEGG: smd:Smed_1655 hypothetical protein
YP_004547647.1	PFAM: Phage major capsid protein E; KEGG: smd:Smed_1654 phage major capsid protein E
YP_004547648.1	KEGG: smd:Smed_1653 hypothetical protein
YP_004547649.1	KEGG: smd:Smed_1652 hypothetical protein
YP_004547650.1	KEGG: smd:Smed_1651 hypothetical protein
YP_004547651.1	KEGG: smd:Smed_1650 hypothetical protein
YP_004547652.1	KEGG: smd:Smed_1649 phage major tail protein, TP901-1
YP_004547653.1	KEGG: smd:Smed_1648 hypothetical protein
YP_004547654.1	KEGG: ptm:GSPATT00023088001 hypothetical protein
YP_004547655.1	PFAM: Phage tail tape measure protein TP901, core region; KEGG: smd:Smed_1646 hypothetical protein
YP_004547656.1	KEGG: smd:Smed_1645 hypothetical protein
YP_004547657.1	KEGG: smd:Smed_1644 hypothetical protein
YP_004547658.1	KEGG: smd:Smed_1876 hypothetical protein
YP_004547659.1	KEGG: smd:Smed_1642 hypothetical protein
YP_004547660.1	PFAM: Domain of unknown function DUF1983; KEGG: smd:Smed_1641 hypothetical protein
YP_004547661.1	KEGG: smd:Smed_1873 hypothetical protein
YP_004547662.1	KEGG: smd:Smed_1639 hypothetical protein
YP_004547663.1	KEGG: smd:Smed_1638 hypothetical protein
YP_004547664.1	KEGG: smd:Smed_1870 hypothetical protein
YP_004547665.1	KEGG: smd:Smed_1869 hypothetical protein
YP_004547668.1	KEGG: smd:Smed_1865 hypothetical protein
YP_004547670.1	KEGG: smd:Smed_1864 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; manually curated; PFAM: Redoxin
YP_004547671.1	PFAM: Necrosis inducing; KEGG: smd:Smed_1863 necrosis-inducing protein
YP_004547672.1	PFAM: Thioredoxin domain; KEGG: smd:Smed_1632 thioredoxin domain-containing protein
YP_004547673.1	KEGG: gdi:GDI_0977 hypothetical protein
YP_004547674.1	KEGG: cms:CMS_0385 putative bacteriophage protein
YP_004547675.1	KEGG: cms:CMS_0384 putative ATP-binding protein
YP_004547676.1	KEGG: cms:CMS_0383 hypothetical protein; PFAM: RES; SMART: RES
YP_004547677.1	KEGG: smd:Smed_1628 hypothetical protein
YP_004547678.1	manually curated; KEGG: smd:Smed_0205 hypothetical protein
YP_004547679.1	PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: smd:Smed_0206 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004547680.1	KEGG: smd:Smed_0207 hypothetical protein
YP_004547681.1	PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: smd:Smed_0208 histidinol dehydrogenase
YP_004547682.1	KEGG: smd:Smed_0209 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP032146; PFAM: Uncharacterised conserved protein UCP032146
YP_004547683.1	KEGG: smd:Smed_0210 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_004547684.1	TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: avi:Avi_0640 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type
YP_004547685.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: smd:Smed_0212 Maf-like protein; PFAM: Maf-like protein
YP_004547686.1	KEGG: smd:Smed_0213 zinc-binding protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding
YP_004547687.1	KEGG: btr:Btr_0524 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF497
YP_004547688.1	KEGG: btr:Btr_0525 hypothetical protein
YP_004547689.1	PFAM: Uncharacterised protein family UPF0150; KEGG: rlt:Rleg2_4060 protein of unknown function UPF0150
YP_004547690.1	KEGG: swi:Swit_0047 YcfA family protein
YP_004547691.1	KEGG: smd:Smed_0215 HPr kinase
YP_004547692.1	KEGG: smd:Smed_0216 hypothetical protein
YP_004547693.1	KEGG: smd:Smed_0217 hypothetical protein
YP_004547694.1	KEGG: rhi:NGR_c02380 hypothetical protein
YP_004547695.1	PFAM: Protein of unknown function DUF930; KEGG: smd:Smed_0218 hypothetical protein
YP_004547696.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_0219 YbaK/prolyl-tRNA synthetase associated region
YP_004547697.1	KEGG: smd:Smed_0220 hypothetical protein
YP_004547698.1	PFAM: Transglycosylase-associated protein; KEGG: smd:Smed_0221 transglycosylase-associated protein
YP_004547699.1	KEGG: smd:Smed_0222 L-rhamnose catabolism isomerase; TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004547700.1	TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; KEGG: smd:Smed_0223 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Class II aldolase/adducin, N-terminal
YP_004547701.1	KEGG: smd:Smed_0224 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004547702.1	TIGRFAM: Rhamnose ABC transporter, rhamnose-binding; KEGG: rhi:NGR_c02450 rhamnose ABC transporter, periplasmic rhamnose-binding protein
YP_004547703.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0226 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547704.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0227 monosaccharide-transporting ATPase
YP_004547705.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0228 monosaccharide-transporting ATPase
YP_004547706.1	TIGRFAM: L-rhamnose 1-epimerase; HAMAP: L-rhamnose 1-epimerase; KEGG: smd:Smed_0229 L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase
YP_004547707.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: smd:Smed_0230 carbohydrate kinase FGGY
YP_004547708.1	KEGG: smd:Smed_0231 hypothetical protein
YP_004547709.1	KEGG: smd:Smed_0232 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling
YP_004547710.1	KEGG: smd:Smed_0233 putative chemotaxis protein CheX
YP_004547711.1	KEGG: smd:Smed_0234 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004547712.1	KEGG: smd:Smed_0235 CheA signal transduction histidine kinase; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain
YP_004547713.1	KEGG: smd:Smed_0236 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_004547714.1	PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: rhi:NGR_c02560 chemotaxis protein methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type
YP_004547715.1	SMART: Signal transduction response regulator, receiver domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; KEGG: smd:Smed_0238 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain
YP_004547716.1	KEGG: smd:Smed_0239 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004547717.1	HAMAP: Chemoreceptor glutamine deamidase CheD; KEGG: smd:Smed_0240 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD
YP_004547718.1	KEGG: smd:Smed_0241 hypothetical protein
YP_004547719.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004547720.1	KEGG: smd:Smed_0242 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal
YP_004547721.1	manually curated; PFAM: Transcription regulator LuxR, C-terminal; KEGG: smd:Smed_0243 regulatory protein LuxR; SMART: Transcription regulator LuxR, C-terminal
YP_004547722.1	KEGG: smd:Smed_0244 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004547723.1	KEGG: smd:Smed_0245 hypothetical protein
YP_004547724.1	KEGG: smd:Smed_0246 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter
YP_004547725.1	PFAM: Flagellar motor switch protein FliG, C-terminal; KEGG: smd:Smed_0247 flagellar motor switch protein G
YP_004547726.1	KEGG: smd:Smed_0248 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA)
YP_004547727.1	PFAM: Surface presentation of antigen (SpoA); KEGG: smd:Smed_0249 surface presentation of antigens (SpoA) protein
YP_004547728.1	TIGRFAM: Flagellar motor stator, MotA; KEGG: smd:Smed_0250 flagellar motor protein MotA
YP_004547729.1	PFAM: Protein of unknown function DUF1217; KEGG: smd:Smed_0251 hypothetical protein
YP_004547730.1	KEGG: smd:Smed_0252 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal
YP_004547731.1	TIGRFAM: Flagellar export ATPase, FliI, clade 3; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; KEGG: smd:Smed_0253 flagellum-specific ATP synthase; SMART: ATPase, AAA+ type, core
YP_004547732.1	KEGG: smd:Smed_0254 hypothetical protein
YP_004547733.1	KEGG: smd:Smed_0255 flagellar basal body rod protein FlgB
YP_004547734.1	KEGG: smd:Smed_0256 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal
YP_004547735.1	KEGG: smd:Smed_0257 flagellar hook-basal body protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE
YP_004547736.1	KEGG: smd:Smed_0258 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal
YP_004547737.1	TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: smd:Smed_0259 flagellar basal body P-ring biosynthesis protein FlgA; SMART: SAF domain
YP_004547738.1	KEGG: smd:Smed_0260 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein
YP_004547739.1	KEGG: smd:Smed_0261 hypothetical protein
YP_004547740.1	PFAM: Flagellar L-ring protein; KEGG: smd:Smed_0262 flagellar basal body L-ring protein
YP_004547741.1	PFAM: Flagellar basal body-associated protein FliL; KEGG: smd:Smed_0263 flagellar basal body-associated protein FliL
YP_004547742.1	KEGG: smd:Smed_0264 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein
YP_004547743.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0265 flagellin domain-containing protein
YP_004547744.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0266 flagellin domain-containing protein
YP_004547745.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0267 flagellin domain-containing protein
YP_004547746.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0268 flagellin domain-containing protein
YP_004547747.1	KEGG: smd:Smed_0270 hypothetical protein
YP_004547748.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_0271 flagellar motor protein MotB
YP_004547749.1	KEGG: smd:Smed_0272 chemotaxis protein
YP_004547750.1	PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: smd:Smed_0273 chemotaxis protein (motility protein D)
YP_004547751.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: rhi:NGR_c02920 putative lytic transglycosylase-like protein, catalytic
YP_004547752.1	KEGG: smd:Smed_0275 two component transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, C-terminal
YP_004547753.1	KEGG: smd:Smed_0276 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal
YP_004547754.1	KEGG: smd:Smed_0277 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal
YP_004547755.1	PFAM: Flagellin, D0/D1 domain; KEGG: smd:Smed_0278 flagellar hook-associated protein FlgL
YP_004547756.1	PFAM: Flagellar FlaF; KEGG: smd:Smed_0279 flagellar biosynthesis regulatory protein FlaF
YP_004547757.1	KEGG: smd:Smed_0280 flagellar biosynthesis repressor FlbT; HAMAP: flagellum biosynthesis repressor protein flbT; PFAM: Flagellar FlbT
YP_004547758.1	PFAM: Flagellar hook capping protein; KEGG: smd:Smed_0281 flagellar basal body rod modification protein
YP_004547759.1	KEGG: smd:Smed_0282 flagellar biosynthesis protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3
YP_004547760.1	KEGG: smd:Smed_0283 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP
YP_004547761.1	KEGG: smd:Smed_0284 flagellar biosynthesis protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein
YP_004547762.1	KEGG: smd:Smed_0285 hypothetical protein
YP_004547763.1	KEGG: smd:Smed_0287 hypothetical protein
YP_004547764.1	KEGG: smd:Smed_0288 hypothetical protein
YP_004547765.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_0289 glycosyl transferase family protein
YP_004547766.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: smd:Smed_0290 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004547767.1	KEGG: smd:Smed_0291 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004547768.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0292 extracellular solute-binding protein
YP_004547769.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0293 binding-protein-dependent transport systems inner membrane component
YP_004547770.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0294 binding-protein-dependent transport systems inner membrane component
YP_004547771.1	KEGG: smd:Smed_0295 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004547772.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_0296 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547773.1	KEGG: smd:Smed_0297 hypothetical protein
YP_004547774.1	TIGRFAM: 6-phosphogluconate dehydratase; KEGG: smd:Smed_0298 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004547775.1	KEGG: smd:Smed_0299 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase, DevB-type
YP_004547776.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: smd:Smed_0300 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004547777.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_0301 FAD dependent oxidoreductase
YP_004547778.1	KEGG: smd:Smed_0302 glutamate--putrescine ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004547779.1	KEGG: smd:Smed_0304 hypothetical protein
YP_004547780.1	KEGG: smd:Smed_0305 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004547782.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_0306 LysR family transcriptional regulator
YP_004547783.1	SMART: Sel1-like; KEGG: aas:Aasi_0854 hypothetical protein
YP_004547784.1	PFAM: Invasion associated locus B; KEGG: dno:DNO_1014 hypothetical protein
YP_004547785.1	KEGG: xtr:100498028 hypothetical protein LOC100498028; TIGRFAM: Adhesin HecA 20-residue repeat x2; PFAM: Domain of unknown function DUF637, haemagglutinin/haemolysin putative
YP_004547786.1	KEGG: bgr:Bgr_03130 hypothetical protein
YP_004547787.1	KEGG: sno:Snov_2008 type I secretion system ATPase
YP_004547788.1	KEGG: msl:Msil_2425 Rv0623-like transcription factor
YP_004547789.1	PFAM: PilT protein, N-terminal; KEGG: msl:Msil_2424 PilT protein domain protein
YP_004547790.1	KEGG: mag:amb3309 site-specific recombinase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal
YP_004547791.1	KEGG: smd:Smed_0307 hypothetical protein
YP_004547792.1	TIGRFAM: Isocitrate lyase; KEGG: smd:Smed_0308 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase
YP_004547793.1	KEGG: smd:Smed_0309 hypothetical protein; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004547794.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0310 extracellular solute-binding protein
YP_004547795.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_0311 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004547796.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0312 binding-protein-dependent transport systems inner membrane component
YP_004547797.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c03310 putrescine ABC transporter system permease protein PotI
YP_004547798.1	KEGG: smd:Smed_0314 AsmA family protein
YP_004547799.1	TIGRFAM: Acetoacetyl-CoA synthase; KEGG: smd:Smed_0315 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004547800.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0317 binding-protein-dependent transport systems inner membrane component
YP_004547801.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_0318 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS
YP_004547802.1	KEGG: smd:Smed_0319 phasin; TIGRFAM: Phasin, subfamily 2; PFAM: Phasin
YP_004547803.1	KEGG: smd:Smed_0321 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004547804.1	TIGRFAM: FAD-linked oxidoreductase; KEGG: smd:Smed_0322 FAD-linked oxidoreductase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase
YP_004547805.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_c03380 putative LysR family transcription regulator protein
YP_004547806.1	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: smd:Smed_0324 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004547807.1	PFAM: Protein of unknown function DUF898; KEGG: smd:Smed_0325 hypothetical protein
YP_004547808.1	PFAM: Peptidase M48; KEGG: smd:Smed_0326 peptidase M48 Ste24p
YP_004547809.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0327 extracellular solute-binding protein
YP_004547810.1	KEGG: smd:Smed_0328 iron-responsive transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004547811.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_0329 extracellular solute-binding protein
YP_004547812.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c03470 dipeptide ABC transport system permease protein DppB
YP_004547813.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0331 binding-protein-dependent transport systems inner membrane component
YP_004547814.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_0332 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547815.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_0333 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547816.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_c03510 putative endoribonuclease L-PSP family protein
YP_004547817.1	KEGG: smd:Smed_0335 hypothetical protein
YP_004547818.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0336 hypothetical protein
YP_004547819.1	KEGG: smd:Smed_0337 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; RNA polymerase sigma factor 70, region 4 type 2; SMART: Signal transduction response regulator, receiver domain
YP_004547820.1	KEGG: smd:Smed_0338 hypothetical protein
YP_004547821.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_0339 17 kDa surface antigen
YP_004547822.1	KEGG: rhi:NGR_c03570 hypothetical protein
YP_004547823.1	KEGG: smd:Smed_0341 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328
YP_004547824.1	KEGG: smd:Smed_0342 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004547825.1	KEGG: smd:Smed_0347 hypothetical protein
YP_004547826.1	PFAM: MgtC/SapB transporter; KEGG: smd:Smed_0348 MgtC/SapB transporter
YP_004547827.1	KEGG: smd:Smed_0349 hypothetical protein
YP_004547828.1	KEGG: smd:Smed_0350 hypothetical protein
YP_004547829.1	KEGG: smd:Smed_0351 hypothetical protein
YP_004547830.1	KEGG: smd:Smed_0352 putative transmembrane protein
YP_004547831.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_0353 protein of unknown function DUF899 thioredoxin family protein
YP_004547832.1	KEGG: smd:Smed_0354 hypothetical protein
YP_004547833.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_0355 hypothetical protein
YP_004547834.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_0356 hypothetical protein
YP_004547835.1	KEGG: rhi:NGR_c14230 hypothetical protein
YP_004547836.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ret:RHE_PE00231 putative ABC transporter, permease protein
YP_004547837.1	KEGG: bid:Bind_2523 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter
YP_004547838.1	KEGG: smd:Smed_3650 rhodanese domain-containing protein
YP_004547839.1	KEGG: smd:Smed_1377 putative signal peptide protein
YP_004547840.1	manually curated; KEGG: smd:Smed_0357 hypothetical protein
YP_004547841.1	PFAM: Ppx/GppA phosphatase; KEGG: smd:Smed_0372 Ppx/GppA phosphatase
YP_004547842.1	KEGG: smd:Smed_0373 ribosomal RNA methyltransferase RrmJ/FtsJ; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ
YP_004547843.1	KEGG: smd:Smed_0374 glyoxalase/bleomycin resistance protein/dioxygenase; manually curated; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004547844.1	KEGG: smd:Smed_0377 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004547845.1	KEGG: smd:Smed_0378 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004547846.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: smd:Smed_0379 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core
YP_004547847.1	PFAM: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein; KEGG: smd:Smed_0380 hypothetical protein
YP_004547848.1	KEGG: smd:Smed_0381 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase
YP_004547849.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0382 LysR family transcriptional regulator
YP_004547850.1	KEGG: smd:Smed_0383 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive
YP_004547851.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0384 LysR family transcriptional regulator
YP_004547852.1	KEGG: rhi:NGR_c03830 hypothetical protein
YP_004547853.1	PFAM: Protein of unknown function DUF2136; KEGG: pde:Pden_0264 hypothetical protein
YP_004547854.1	KEGG: pde:Pden_0265 XRE family transcriptional regulator
YP_004547855.1	KEGG: smd:Smed_0386 hypothetical protein
YP_004547856.1	TIGRFAM: Glutamate--cysteine ligase, plant; KEGG: smd:Smed_0387 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2
YP_004547857.1	KEGG: smd:Smed_0388 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E
YP_004547858.1	PFAM: Phosphate transporter; KEGG: smd:Smed_0389 phosphate transporter
YP_004547859.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0390 NUDIX hydrolase
YP_004547860.1	KEGG: smd:Smed_0391 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004547861.1	PFAM: Protein of unknown function DUF3422; KEGG: smd:Smed_0392 hypothetical protein
YP_004547862.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0393 LysR family transcriptional regulator
YP_004547863.1	KEGG: smd:Smed_0394 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004547864.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: smd:Smed_0395 FAD linked oxidase domain-containing protein
YP_004547865.1	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: smd:Smed_0396 hypothetical protein
YP_004547866.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004547867.1	PFAM: YkuD domain; KEGG: smd:Smed_0397 ErfK/YbiS/YcfS/YnhG family protein
YP_004547868.1	PFAM: YkuD domain; KEGG: smd:Smed_0398 ErfK/YbiS/YcfS/YnhG family protein
YP_004547869.1	KEGG: smd:Smed_0399 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase
YP_004547870.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: smd:Smed_0400 permease for cytosine/purines uracil thiamine allantoin
YP_004547871.1	PFAM: Domain of unknown function DUF305; KEGG: smd:Smed_0401 hypothetical protein
YP_004547872.1	KEGG: smd:Smed_0402 hypothetical protein
YP_004547873.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: smd:Smed_0403 histidyl-tRNA synthetase
YP_004547874.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; KEGG: smd:Smed_0404 ATP phosphoribosyltransferase regulatory subunit
YP_004547875.1	TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: rhi:NGR_c04030 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain
YP_004547876.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0406 glutathione S-transferase domain-containing protein
YP_004547877.1	KEGG: smd:Smed_0407 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004547878.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_0408 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004547879.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: rhi:NGR_c04090 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_004547880.1	KEGG: smd:Smed_0410 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily hydrolase, subfamily IIA, hypothetical 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004547881.1	SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: smd:Smed_0411 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase
YP_004547882.1	TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: smd:Smed_0412 isoleucyl-tRNA synthetase
YP_004547883.1	KEGG: smd:Smed_0413 hypothetical protein
YP_004547884.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0414 GCN5-related N-acetyltransferase
YP_004547885.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rhi:NGR_c04170 putative cytidine and deoxycytidylate deaminase
YP_004547886.1	KEGG: smd:Smed_0416 pseudouridine synthase; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4
YP_004547887.1	KEGG: smd:Smed_0417 putative methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD
YP_004547888.1	PFAM: Patatin/Phospholipase A2-related; KEGG: smd:Smed_0418 patatin
YP_004547889.1	PFAM: PilT protein, N-terminal; KEGG: nha:Nham_4577 PilT protein-like
YP_004547890.1	PFAM: Rv0623-like transcription factor; KEGG: nha:Nham_4578 Rv0623-like transcription factor
YP_004547891.1	KEGG: smd:Smed_0420 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal
YP_004547892.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: smd:Smed_0421 peptidase U62 modulator of DNA gyrase
YP_004547893.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_0422 inositol monophosphatase
YP_004547894.1	KEGG: smd:Smed_0423 hypothetical protein
YP_004547895.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; Glycosyl transferase, group 1; KEGG: smd:Smed_0424 3-deoxy-D-manno-octulosonic-acid transferase
YP_004547896.1	KEGG: smd:Smed_0425 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004547897.1	TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: smd:Smed_0426 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase
YP_004547898.1	PFAM: Protein of unknown function DUF2093; KEGG: smd:Smed_0427 hypothetical protein
YP_004547899.1	SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: smd:Smed_0428 DNA mismatch repair protein; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain
YP_004547900.1	TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver domain; PAS fold-4; KEGG: smd:Smed_0429 putative PAS/PAC sensor protein; SMART: Signal transduction response regulator, receiver domain; PAS
YP_004547901.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_0430 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004547902.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0431 LysR family transcriptional regulator
YP_004547903.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_0432 trimethylamine methyltransferase
YP_004547904.1	PFAM: PRC-barrel; KEGG: smd:Smed_0433 PRC-barrel domain-containing protein
YP_004547905.1	KEGG: rhi:NGR_c04330 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004547906.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_0435 SMP-30/gluconolaconase/LRE domain-containing protein
YP_004547907.1	KEGG: smd:Smed_0436 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PFAM: KDPG/KHG aldolase
YP_004547908.1	KEGG: smd:Smed_0437 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase
YP_004547909.1	KEGG: smd:Smed_0438 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004547910.1	KEGG: smd:Smed_0439 transcriptional regulator IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004547911.1	KEGG: smd:Smed_0440 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004547912.1	KEGG: smd:Smed_0441 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004547913.1	PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: smd:Smed_0442 hypothetical protein
YP_004547914.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: smd:Smed_0443 magnesium and cobalt transport protein CorA
YP_004547915.1	KEGG: smd:Smed_0444 K potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter
YP_004547916.1	PFAM: Cell wall hydrolase, SleB; KEGG: smd:Smed_0445 cell wall hydrolase SleB
YP_004547917.1	KEGG: rhi:NGR_c04460 putative ATP synthase protein I
YP_004547918.1	TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: smd:Smed_0447 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A
YP_004547919.1	KEGG: smd:Smed_0448 F0F1 ATP synthase subunit C; HAMAP: ATPase, F0 complex, subunit C; PFAM: ATPase, F0/V0 complex, subunit C
YP_004547920.1	KEGG: smd:Smed_0449 F0F1 ATP synthase subunit B'; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_004547921.1	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: smd:Smed_0450 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_004547922.1	KEGG: smd:Smed_0451 ribonuclease HII; PFAM: Ribonuclease HII/HIII
YP_004547923.1	KEGG: smd:Smed_0452 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004547924.1	KEGG: smd:Smed_0453 hypothetical protein
YP_004547925.1	KEGG: smd:Smed_0454 hypothetical protein
YP_004547926.1	TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: rhi:NGR_c04550 putative molybdenum cofactor biosynthesis protein; SMART: Molybdopterin binding
YP_004547927.1	PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: smd:Smed_0456 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
YP_004547928.1	PFAM: Tetratricopeptide TPR-1; KEGG: smd:Smed_0457 TPR repeat-containing protein
YP_004547929.1	PFAM: Polyprenyl synthetase; KEGG: smd:Smed_0458 polyprenyl synthetase
YP_004547930.1	PFAM: Protein of unknown function DUF2007; KEGG: smd:Smed_0459 hypothetical protein
YP_004547931.1	PFAM: Methyltransferase small; KEGG: smd:Smed_0460 methyltransferase small
YP_004547932.1	PFAM: Peptidase S49; KEGG: smd:Smed_0461 peptidase S49
YP_004547933.1	KEGG: smd:Smed_0462 hypothetical protein
YP_004547934.1	PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: smd:Smed_0463 glycyl-tRNA synthetase subunit alpha
YP_004547935.1	KEGG: bpl:BURPS1106A_A1510 hypothetical protein
YP_004547936.1	PFAM: LemA; KEGG: rhi:NGR_c04650 LemA family protein
YP_004547937.1	PFAM: Protein of unknown function DUF2207, membrane; KEGG: smd:Smed_0465 putative transmembrane signal peptide protein
YP_004547938.1	TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: smd:Smed_0466 glycyl-tRNA synthetase subunit beta
YP_004547939.1	PFAM: Domain of unknown function DUF523; KEGG: smd:Smed_0467 hypothetical protein
YP_004547940.1	KEGG: smd:Smed_0470 hypothetical protein
YP_004547941.1	TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: smd:Smed_0471 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain
YP_004547942.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_0472 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004547943.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_0473 extracellular solute-binding protein
YP_004547944.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0474 major facilitator transporter
YP_004547945.1	KEGG: smd:Smed_0475 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004547946.1	PFAM: MltA-interacting MipA; KEGG: smd:Smed_0476 MltA-interacting MipA family protein
YP_004547947.1	KEGG: smd:Smed_0477 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase
YP_004547948.1	KEGG: smd:Smed_0478 hypothetical protein
YP_004547949.1	PFAM: Protein of unknown function DUF1217; KEGG: smd:Smed_0479 hypothetical protein
YP_004547950.1	KEGG: smd:Smed_0480 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004547951.1	KEGG: smd:Smed_0481 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5
YP_004547952.1	KEGG: smd:Smed_0482 hypothetical protein
YP_004547953.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_0483 Rieske (2Fe-2S) domain-containing protein
YP_004547954.1	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; KEGG: smd:Smed_0484 ferredoxin
YP_004547955.1	PFAM: Glycoside hydrolase, family 25; KEGG: smd:Smed_0485 glycoside hydrolase family protein
YP_004547956.1	PFAM: BA14K-like; KEGG: smd:Smed_0486 BA14K family protein
YP_004547957.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rhi:NGR_c04890 putative cationic transport protein
YP_004547958.1	KEGG: smd:Smed_0487 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004547959.1	PFAM: Crotonase, core; KEGG: smd:Smed_0488 enoyl-CoA hydratase
YP_004547960.1	KEGG: smd:Smed_0489 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004547961.1	PFAM: (Uracil-5)-methyltransferase; KEGG: smd:Smed_0490 (uracil-5)-methyltransferase
YP_004547962.1	TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: smd:Smed_0491 hemolysin A; SMART: RNA-binding S4
YP_004547963.1	KEGG: smd:Smed_0492 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain
YP_004547964.1	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: smd:Smed_0493 pirin domain-containing protein
YP_004547965.1	TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: smd:Smed_0495 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit
YP_004547966.1	PFAM: Histone deacetylase superfamily; KEGG: smd:Smed_0496 histone deacetylase superfamily protein
YP_004547967.1	KEGG: smd:Smed_0497 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004547968.1	PFAM: Thioesterase superfamily; KEGG: smd:Smed_0498 thioesterase superfamily protein
YP_004547969.1	TIGRFAM: Thiolase; KEGG: smd:Smed_0499 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004547970.1	KEGG: smd:Smed_0500 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004547971.1	PFAM: BioY protein; KEGG: smd:Smed_0501 BioY protein
YP_004547972.1	PFAM: Cobalt transport protein; KEGG: smd:Smed_0502 cobalt transport protein
YP_004547973.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0503 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004547974.1	PFAM: Protein of unknown function DUF1006; KEGG: smd:Smed_0504 hypothetical protein
YP_004547975.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: smd:Smed_0505 peptidase U62 modulator of DNA gyrase
YP_004547976.1	KEGG: smd:Smed_0506 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Sporulation-related domain
YP_004547977.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_0507 polysaccharide deacetylase
YP_004547978.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: smd:Smed_0509 pyridoxamine 5'-phosphate oxidase
YP_004547979.1	KEGG: smd:Smed_0510 hypothetical protein
YP_004547980.1	KEGG: smd:Smed_0511 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004547981.1	KEGG: smd:Smed_0512 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004547982.1	KEGG: smd:Smed_0513 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004547983.1	PFAM: Protein of unknown function DUF1344; KEGG: smd:Smed_0514 hypothetical protein
YP_004547984.1	TIGRFAM: Chorismate synthase; KEGG: smd:Smed_0515 chorismate synthase; PFAM: Chorismate synthase
YP_004547985.1	KEGG: smd:Smed_0516 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA
YP_004547986.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_0517 invasion associated locus B family protein
YP_004547987.1	TIGRFAM: Cytochrome c oxidase, subunit II; KEGG: smd:Smed_0518 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain
YP_004547988.1	KEGG: smd:Smed_0519 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004547989.1	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: smd:Smed_0520 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase
YP_004547990.1	KEGG: smd:Smed_0521 hypothetical protein
YP_004547991.1	KEGG: smd:Smed_0522 cytochrome c oxidase assembly protein; HAMAP: Cytochrome c oxidase assembly protein ctaG; PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11
YP_004547992.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_0523 cytochrome c oxidase subunit III
YP_004547993.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_0525 hypothetical protein
YP_004547994.1	PFAM: Surfeit locus 1; KEGG: smd:Smed_0526 surfeit locus 1 family protein
YP_004547995.1	PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: smd:Smed_0527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
YP_004547996.1	PFAM: Aminoglycoside phosphotransferase; TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: smd:Smed_0528 homoserine kinase
YP_004547997.1	KEGG: smd:Smed_0529 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H domain
YP_004547998.1	PFAM: Redoxin; KEGG: smd:Smed_0530 redoxin domain-containing protein
YP_004547999.1	KEGG: smd:Smed_0531 hypothetical protein
YP_004548000.1	KEGG: smd:Smed_0532 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179
YP_004548001.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; 7TM-DISM receptor, extracellular domain, type 1; 7TM-DISM receptor, extracellular domain, type 2; PAS fold-3; Diguanylate cyclase, predicted; KEGG: smd:Smed_0533 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif
YP_004548002.1	KEGG: smd:Smed_0534 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004548003.1	KEGG: smd:Smed_0535 processing peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal
YP_004548004.1	TIGRFAM: Threonine synthase; KEGG: smd:Smed_0536 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004548005.1	KEGG: smd:Smed_0537 hypothetical protein
YP_004548006.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_0538 extracellular ligand-binding receptor
YP_004548007.1	KEGG: smd:Smed_0539 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004548008.1	KEGG: smd:Smed_0540 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004548009.1	PFAM: DNA methylase N-4/N-6; KEGG: smd:Smed_0541 DNA methylase N-4/N-6 domain-containing protein
YP_004548010.1	KEGG: smd:Smed_0542 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004548011.1	TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: smd:Smed_0543 A/G-specific adenine glycosylase; SMART: HhH-GPD domain
YP_004548012.1	PFAM: Protein of unknown function DUF721/UPF0232; KEGG: smd:Smed_0544 hypothetical protein
YP_004548013.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_0545 DsbA oxidoreductase
YP_004548014.1	TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; KEGG: smd:Smed_0547 chromosome segregation protein SMC; SMART: SMCs flexible hinge
YP_004548015.1	TIGRFAM: Pyruvate, phosphate dikinase; KEGG: smd:Smed_0548 pyruvate phosphate dikinase; PFAM: PEP-utilising enzyme; Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain
YP_004548016.1	KEGG: smd:Smed_0549 hypothetical protein
YP_004548017.1	KEGG: smd:Smed_0550 hypothetical protein
YP_004548018.1	KEGG: smd:Smed_0551 hypothetical protein
YP_004548019.1	KEGG: smd:Smed_0552 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004548020.1	manually curated; KEGG: ddf:DEFDS_0878 hypothetical protein
YP_004548021.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_0553 MscS mechanosensitive ion channel
YP_004548022.1	KEGG: smd:Smed_0554 hypothetical protein
YP_004548023.1	KEGG: smd:Smed_0555 hypothetical protein
YP_004548024.1	KEGG: avi:Avi_1998 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004548025.1	PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; HAMAP: Sulphate adenylyltransferase, large subunit; KEGG: smd:Smed_0557 sulfate adenylyltransferase subunit 1
YP_004548026.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: rhi:NGR_c06950 sulfate adenylyltransferase subunit 2
YP_004548027.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; HAMAP: Phosphoadenosine phosphosulphate reductase CysH-type; KEGG: smd:Smed_0559 adenylylsulfate reductase, thioredoxin dependent
YP_004548028.1	KEGG: smd:Smed_0560 hypothetical protein
YP_004548029.1	KEGG: smd:Smed_0561 hypothetical protein
YP_004548030.1	PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; TIGRFAM: Choline dehydrogenase; HAMAP: Choline dehydrogenase; KEGG: smd:Smed_0562 choline dehydrogenase
YP_004548031.1	PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Betaine aldehyde dehydrogenase; HAMAP: Betaine aldehyde dehydrogenase; KEGG: smd:Smed_0563 betaine aldehyde dehydrogenase
YP_004548032.1	TIGRFAM: Choline-sulfatase; KEGG: smd:Smed_0564 sulfatase; PFAM: Sulfatase
YP_004548033.1	KEGG: smd:Smed_0565 transcriptional regulator BetI; TIGRFAM: Transcriptional repressor BetI; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004548034.1	KEGG: smd:Smed_0566 hypothetical protein
YP_004548035.1	KEGG: smd:Smed_0567 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004548036.1	SMART: Polyketide synthase, enoylreductase; TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: smd:Smed_0568 quinone oxidoreductase putative PIG3; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004548037.1	KEGG: smd:Smed_0569 hypothetical protein
YP_004548038.1	PFAM: L-asparaginase II; KEGG: smd:Smed_0570 L-asparaginase II
YP_004548039.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0571 glutathione S-transferase domain-containing protein
YP_004548040.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0572 LysR family transcriptional regulator
YP_004548041.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: smd:Smed_0573 glutathione S-transferase domain-containing protein
YP_004548042.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; GAF; KEGG: smd:Smed_0574 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF
YP_004548043.1	PFAM: YkuD domain; KEGG: smd:Smed_0575 ErfK/YbiS/YcfS/YnhG family protein
YP_004548044.1	KEGG: smd:Smed_0576 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004548045.1	KEGG: smd:Smed_0577 OsmC family protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein
YP_004548046.1	PFAM: PhnA protein, C-terminal; KEGG: rhi:NGR_c07170 PhnA-like protein
YP_004548047.1	PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; KEGG: smd:Smed_0578 protein of unknown function DUF853 NPT hydrolase putative
YP_004548048.1	KEGG: smd:Smed_0579 hypothetical protein
YP_004548049.1	KEGG: smd:Smed_0580 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004548050.1	HAMAP: Trans-aconitate 2-methyltransferase; KEGG: smd:Smed_0581 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11
YP_004548051.1	TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: smd:Smed_0582 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase-like hydrolase
YP_004548052.1	KEGG: smd:Smed_0583 hypothetical protein
YP_004548053.1	KEGG: smd:Smed_0584 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004548054.1	PFAM: Aminotransferase, class IV; KEGG: smd:Smed_0585 aminotransferase
YP_004548055.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0586 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004548056.1	PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: smd:Smed_0587 superoxide dismutase
YP_004548057.1	KEGG: smd:Smed_0588 helix-turn-helix type 11 domain-containing protein
YP_004548058.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_0589 lysine exporter protein LysE/YggA
YP_004548059.1	PFAM: Cytochrome c, class II; KEGG: smd:Smed_0590 cytochrome c class II
YP_004548060.1	KEGG: smd:Smed_0591 gluconate 2-dehydrogenase (acceptor)
YP_004548061.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0592 GCN5-related N-acetyltransferase
YP_004548062.1	KEGG: smd:Smed_0593 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004548063.1	KEGG: smd:Smed_0594 beta-lactamase; PFAM: Beta-lactamase-related
YP_004548064.1	SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related; KEGG: smd:Smed_0595 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal
YP_004548065.1	KEGG: smd:Smed_0596 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061
YP_004548066.1	PFAM: Protein of unknown function DUF1697; KEGG: smd:Smed_0598 hypothetical protein
YP_004548067.1	KEGG: smd:Smed_0599 oligopeptidase B
YP_004548068.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_0602 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004548069.1	PFAM: UspA; KEGG: rhi:NGR_c07450 hypothetical protein
YP_004548070.1	KEGG: smd:Smed_0604 TraR/DksA family transcriptional regulator
YP_004548071.1	PFAM: Hly-III-related; KEGG: smd:Smed_0605 Hly-III family protein
YP_004548072.1	KEGG: smd:Smed_0606 hypothetical protein
YP_004548073.1	PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Methionine sulphoxide reductase B; KEGG: rhi:NGR_c07490 peptide methionine sulfoxide reductase MsrB 3
YP_004548074.1	KEGG: smd:Smed_0607 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal
YP_004548075.1	PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: smd:Smed_0608 putative monovalent cation/H+ antiporter subunit B
YP_004548076.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: smd:Smed_0609 putative monovalent cation/H+ antiporter subunit C
YP_004548077.1	KEGG: smd:Smed_0610 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004548078.1	PFAM: cation antiporter; KEGG: smd:Smed_0611 putative monovalent cation/H+ antiporter subunit E
YP_004548079.1	PFAM: Multiple resistance and pH regulation protein F; KEGG: smd:Smed_0612 putative monovalent cation/H+ antiporter subunit F
YP_004548080.1	KEGG: smd:Smed_0613 putative monovalent cation/H+ antiporter subunit G; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit
YP_004548081.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_0614 MucR family transcriptional regulator
YP_004548082.1	PFAM: Fe-S metabolism associated SufE; KEGG: smd:Smed_0615 Fe-S metabolism associated SufE
YP_004548083.1	KEGG: smd:Smed_0616 hypothetical protein
YP_004548084.1	KEGG: smd:Smed_0617 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004548085.1	PFAM: Peptidoglycan binding-like; KEGG: smd:Smed_0618 peptidoglycan binding domain-containing protein
YP_004548086.1	PFAM: Protein of unknown function DUF1491; KEGG: smd:Smed_0619 hypothetical protein
YP_004548087.1	PFAM: Protein of unknown function DUF2336; KEGG: smd:Smed_0620 hypothetical protein
YP_004548088.1	KEGG: smd:Smed_0621 SH3 type 3 domain-containing protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial
YP_004548089.1	KEGG: smd:Smed_0622 hypothetical protein
YP_004548091.1	KEGG: smd:Smed_0623 hypothetical protein
YP_004548092.1	KEGG: smd:Smed_0624 hypothetical protein
YP_004548093.1	PFAM: Domain of unknown function DUF1214; KEGG: smd:Smed_0625 hypothetical protein
YP_004548094.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: smd:Smed_0626 1A family penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004548095.1	KEGG: smd:Smed_0627 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153
YP_004548096.1	KEGG: rhi:NGR_c07720 hypothetical protein
YP_004548097.1	KEGG: rec:RHECIAT_CH0001375 hypothetical protein
YP_004548099.1	KEGG: smd:Smed_0629 putative signal peptide protein
YP_004548100.1	KEGG: smd:Smed_0630 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004548101.1	KEGG: smd:Smed_0631 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain
YP_004548102.1	KEGG: smd:Smed_0632 putative outer-membranne lipoprotein
YP_004548103.1	TIGRFAM: Cytochrome c-type biogenesis protein CcmI; KEGG: smd:Smed_0633 cytochrome c-type biogenesis transmembrane protein
YP_004548104.1	KEGG: smd:Smed_0634 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein
YP_004548105.1	KEGG: smd:Smed_0635 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein
YP_004548106.1	PFAM: Cytochrome C biogenesis protein CcmH; KEGG: smd:Smed_0636 cytochrome c biogenesis protein
YP_004548107.1	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: smd:Smed_0637 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF
YP_004548108.1	KEGG: smd:Smed_0638 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004548109.1	KEGG: smd:Smed_0639 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004548110.1	KEGG: smd:Smed_0640 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase
YP_004548111.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: smd:Smed_0641 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif
YP_004548112.1	TIGRFAM: Peptidase M1, alanyl aminopeptidase; KEGG: smd:Smed_0642 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal
YP_004548113.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0643 hypothetical protein
YP_004548115.1	KEGG: smd:Smed_0645 hypothetical protein
YP_004548116.1	KEGG: rhi:NGR_c07910 hypothetical protein
YP_004548117.1	KEGG: smd:Smed_0647 phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_004548118.1	KEGG: smd:Smed_0648 putative heat shock protein
YP_004548119.1	KEGG: smd:Smed_0649 electron-transferring-flavoprotein dehydrogenase; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004548120.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_0650 substrate-binding region of ABC-type glycine betaine transport system
YP_004548121.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_0651 binding-protein-dependent transport systems inner membrane component
YP_004548122.1	TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; KEGG: smd:Smed_0652 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004548123.1	PFAM: Helix-turn-helix, HxlR type; KEGG: smd:Smed_0653 HxlR family transcriptional regulator
YP_004548124.1	PFAM: Diacylglycerol kinase, catalytic domain; KEGG: smd:Smed_0654 diacylglycerol kinase catalytic region
YP_004548125.1	KEGG: smd:Smed_0655 glycosyl transferase family protein
YP_004548126.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_0656 glycosyl transferase family protein
YP_004548127.1	PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: smd:Smed_0657 hypothetical protein
YP_004548128.1	TIGRFAM: AMP nucleosidase; KEGG: smd:Smed_0658 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain
YP_004548129.1	KEGG: smd:Smed_0659 hypothetical protein; HAMAP: Uncharacterised protein family UPF0060; PFAM: Uncharacterised protein family UPF0060
YP_004548130.1	KEGG: smd:Smed_0660 hypothetical protein
YP_004548131.1	KEGG: smd:Smed_0661 hypothetical protein
YP_004548132.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_0662 glutathione S-transferase domain-containing protein
YP_004548133.1	PFAM: Protein of unknown function DUF2147; KEGG: smd:Smed_0663 hypothetical protein
YP_004548134.1	PFAM: Sel1-like; KEGG: smd:Smed_0664 Sel1 domain-containing protein
YP_004548135.1	KEGG: smd:Smed_0665 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004548136.1	PFAM: Integrase, catalytic core, phage; KEGG: avi:Avi_0710 integrase protein
YP_004548137.1	KEGG: amd:AMED_1487 LuxR family transcriptional regulator
YP_004548138.1	KEGG: bxe:Bxe_A3590 dihydroorotase
YP_004548139.1	KEGG: bfo:BRAFLDRAFT_86808 hypothetical protein
YP_004548140.1	SMART: HNH nuclease; KEGG: rlt:Rleg2_2473 hypothetical protein
YP_004548141.1	KEGG: rno:114029 multiple EGF-like-domains 8
YP_004548142.1	KEGG: mno:Mnod_3591 hypothetical protein
YP_004548143.1	KEGG: sbl:Sbal_3622 hypothetical protein
YP_004548145.1	KEGG: ppg:PputGB1_3460 hypothetical protein
YP_004548146.1	KEGG: rpt:Rpal_0651 hypothetical protein
YP_004548147.1	KEGG: dwi:Dwil_GK10144 GK10144 gene product from transcript GK10144-RA
YP_004548148.1	KEGG: smd:Smed_1926 hypothetical protein
YP_004548149.1	KEGG: rlt:Rleg2_2465 phage recombination protein Bet; TIGRFAM: Phage recombination protein Bet; PFAM: DNA single-strand annealing protein RecT-like
YP_004548150.1	PFAM: Siphovirus Gp157; KEGG: smd:Smed_1924 siphovirus GP157 family protein
YP_004548151.1	KEGG: nar:Saro_2018 protein translocase subunit SecG
YP_004548152.1	KEGG: rhi:NGR_c19180 hypothetical protein
YP_004548153.1	KEGG: hse:Hsero_2103 capsule biosynthesis protein
YP_004548154.1	KEGG: ngk:NGK_0651 putative lambda repressor protein CI, putative phage associated protein
YP_004548155.1	KEGG: ara:Arad_3094 hypothetical protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3
YP_004548156.1	KEGG: oan:Oant_0220 hypothetical protein
YP_004548157.1	KEGG: phu:Phum_PHUM210160 Chondroitin sulfate proteoglycan 4 precursor, putative
YP_004548158.1	SMART: HNH nuclease; KEGG: mes:Meso_0235 hypothetical protein
YP_004548159.1	KEGG: mlo:mlr7984 hypothetical protein
YP_004548161.1	KEGG: cef:CE0206 putative oxidoreductase
YP_004548162.1	KEGG: rlt:Rleg2_2450 hypothetical protein
YP_004548163.1	KEGG: mno:Mnod_5786 hypothetical protein
YP_004548164.1	KEGG: mru:mru_1809 transcription elongation factor NusA-like protein
YP_004548165.1	KEGG: smd:Smed_1909 hypothetical protein
YP_004548166.1	PFAM: Protein of unknown function DUF1064; KEGG: smd:Smed_1908 hypothetical protein
YP_004548167.1	KEGG: ppd:Ppro_3125 hypothetical protein
YP_004548168.1	KEGG: smd:Smed_1906 hypothetical protein
YP_004548169.1	KEGG: oan:Oant_1558 hypothetical protein
YP_004548170.1	PFAM: GcrA cell cycle regulator; KEGG: smd:Smed_1905 GcrA cell cycle regulator
YP_004548171.1	KEGG: smd:Smed_1904 hypothetical protein
YP_004548172.1	KEGG: smd:Smed_4338 hypothetical protein
YP_004548173.1	KEGG: smd:Smed_4851 exopeptide protein
YP_004548174.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1899 hypothetical protein
YP_004548175.1	KEGG: zma:100285152 microtubule-associated protein MAP65-1a
YP_004548176.1	PFAM: Terminase small subunit; KEGG: smd:Smed_1897 phage terminase small subunit
YP_004548177.1	KEGG: smd:Smed_1896 hypothetical protein
YP_004548178.1	TIGRFAM: Phage-related protein HI1409; KEGG: smd:Smed_1895 HI1409 family phage-associated protein
YP_004548180.1	PFAM: Protein of unknown function DUF2213; KEGG: smd:Smed_1894 hypothetical protein
YP_004548181.1	KEGG: nar:Saro_2723 hypothetical protein
YP_004548182.1	PFAM: Protein of unknown function DUF2184; KEGG: nar:Saro_2724 hypothetical protein
YP_004548183.1	KEGG: smd:Smed_1891 hypothetical protein
YP_004548184.1	KEGG: smd:Smed_1890 hypothetical protein
YP_004548185.1	KEGG: smd:Smed_1889 hypothetical protein
YP_004548186.1	KEGG: smd:Smed_1888 hypothetical protein
YP_004548187.1	KEGG: rec:RHECIAT_PB0000208 hypothetical protein
YP_004548188.1	KEGG: pna:Pnap_2550 transcription-repair coupling factor
YP_004548189.1	KEGG: cms:CMS_1852 hypothetical protein
YP_004548190.1	PFAM: Phage putative head morphogenesis protein, SPP1 gp7; KEGG: rlt:Rleg2_2421 hypothetical protein
YP_004548191.1	KEGG: rlt:Rleg2_2420 hypothetical protein
YP_004548192.1	KEGG: rlt:Rleg2_2419 hypothetical protein
YP_004548193.1	KEGG: rlt:Rleg2_2418 hypothetical protein
YP_004548194.1	KEGG: rlt:Rleg2_2417 hypothetical protein
YP_004548195.1	KEGG: rlt:Rleg2_2416 hypothetical protein
YP_004548196.1	PFAM: Prophage tail length tape measure; KEGG: rlt:Rleg2_2414 hypothetical protein
YP_004548197.1	KEGG: rlt:Rleg2_2413 hypothetical protein
YP_004548198.1	KEGG: ara:Arad_2310 hypothetical protein
YP_004548199.1	KEGG: ara:Arad_2312 hypothetical protein
YP_004548200.1	KEGG: ara:Arad_2314 hypothetical protein
YP_004548201.1	PFAM: Lipase, GDSL; KEGG: vap:Vapar_2490 hypothetical protein
YP_004548202.1	KEGG: olu:OSTLU_93353 ICln family transporter: chloride ion current inducer protein I(Cln)
YP_004548203.1	KEGG: yli:YALI0C19778g YALI0C19778p
YP_004548204.1	PFAM: Methyltransferase type 11; KEGG: chl:Chy400_1582 methyltransferase type 11
YP_004548205.1	KEGG: azc:AZC_0776 ABC transporter substrate binding protein
YP_004548206.1	KEGG: gfo:GFO_0889 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004548207.1	KEGG: smd:Smed_6361 hypothetical protein
YP_004548208.1	PFAM: Peptidoglycan binding-like; KEGG: smd:Smed_1867 chitinase-like protein
YP_004548209.1	KEGG: smd:Smed_4778 hypothetical protein
YP_004548210.1	KEGG: smd:Smed_1865 hypothetical protein
YP_004548211.1	KEGG: smd:Smed_4832 hypothetical protein
YP_004548212.1	PFAM: Transposase, mutator type; KEGG: smd:Smed_6034 transposase mutator type
YP_004548213.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_1864 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004548214.1	PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; KEGG: rpe:RPE_4533 nitrogenase reductase
YP_004548215.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: xau:Xaut_2649 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3
YP_004548216.1	PFAM: Plasmid maintenance system killer; KEGG: xau:Xaut_2650 plasmid maintenance system killer
YP_004548217.1	KEGG: rba:RB6127 signal peptide
YP_004548218.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_0668 porin
YP_004548219.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_0670 porin
YP_004548220.1	PFAM: BA14K-like; KEGG: smd:Smed_0671 BA14K family protein
YP_004548221.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_0672 lytic transglycosylase catalytic
YP_004548222.1	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: smd:Smed_0673 dihydrodipicolinate synthase
YP_004548223.1	TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: smd:Smed_0674 SsrA-binding protein; PFAM: SsrA-binding protein
YP_004548225.1	TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; KEGG: oan:Oant_4504 outer membrane autotransporter; SMART: Autotransporter beta-domain
YP_004548226.1	PFAM: Domain of unknown function DUF88; KEGG: rhi:NGR_c08220 hypothetical protein
YP_004548227.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: smd:Smed_0676 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2
YP_004548228.1	SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: smd:Smed_0677 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT
YP_004548229.1	TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: rhi:NGR_b23590 hypothetical protein; SMART: Transcription regulator AbrB/SpoV, predicted
YP_004548230.1	KEGG: rhi:NGR_b23580 putative nucleic acid-binding protein
YP_004548231.1	PFAM: Protein of unknown function DUF3563; KEGG: smd:Smed_0678 hypothetical protein
YP_004548232.1	PFAM: Protein of unknown function DUF2062; KEGG: smd:Smed_0679 hypothetical protein
YP_004548233.1	TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; HAMAP: Holo-[acyl carrier protein] synthase; KEGG: rhi:NGR_c08270 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase
YP_004548234.1	TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: smd:Smed_0681 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_004548235.1	KEGG: smd:Smed_0682 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding
YP_004548236.1	TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: smd:Smed_0683 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2
YP_004548237.1	KEGG: atu:Atu5322 hypothetical protein; TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase
YP_004548238.1	TIGRFAM: Arsenate reductase; KEGG: rhi:NGR_b21790 arsenate reductase; PFAM: Arsenate reductase-like
YP_004548239.1	PFAM: Major intrinsic protein; KEGG: rhi:NGR_b21800 putative glycerol uptake transporter protein, MIP family
YP_004548240.1	KEGG: mes:Meso_4198 ArsR family transcriptional regulator; PFAM: Transcription regulator Rrf2; SMART: HTH transcriptional regulator, ArsR
YP_004548241.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_0684 glycerophosphoryl diester phosphodiesterase
YP_004548242.1	KEGG: smd:Smed_0685 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_004548243.1	KEGG: smd:Smed_0686 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1
YP_004548244.1	KEGG: smd:Smed_0687 putative signal peptide protein
YP_004548245.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: smd:Smed_0688 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004548246.1	KEGG: smd:Smed_0689 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004548247.1	SMART: HTH transcriptional regulator, ArsR; KEGG: smd:Smed_0690 regulatory protein ArsR
YP_004548248.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_0691 activator of HSP90 ATPase 1 family protein
YP_004548249.1	KEGG: smd:Smed_0692 hypothetical protein
YP_004548250.1	PFAM: YkuD domain; KEGG: rhi:NGR_c08420 hypothetical protein
YP_004548251.1	TIGRFAM: Recombination protein O, RecO; HAMAP: Recombination protein O, RecO; KEGG: smd:Smed_0693 DNA repair protein RecO; PFAM: Recombination protein O, RecO
YP_004548252.1	PFAM: Protein of unknown function DUF839; KEGG: smd:Smed_0694 hypothetical protein
YP_004548253.1	PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: smd:Smed_0695 hypothetical protein
YP_004548254.1	KEGG: smd:Smed_0696 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain
YP_004548255.1	PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; KEGG: smd:Smed_0697 MOSC domain-containing protein
YP_004548256.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0698 major facilitator transporter
YP_004548257.1	TIGRFAM: Quinolinate synthetase A; KEGG: smd:Smed_0699 quinolinate synthetase; PFAM: Quinolinate synthetase A
YP_004548258.1	TIGRFAM: L-aspartate oxidase; KEGG: smd:Smed_0700 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004548259.1	TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: smd:Smed_0701 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal
YP_004548260.1	PFAM: Superoxide dismutase, copper/zinc binding; KEGG: smd:Smed_0702 superoxide dismutase copper/zinc binding
YP_004548261.1	KEGG: mfs:MFS40622_0398 hypothetical protein
YP_004548262.1	KEGG: btr:Btr_0687 putative transporter; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004548263.1	KEGG: etr:ETAE_0506 hypothetical protein
YP_004548264.1	KEGG: smd:Smed_0703 hypothetical protein
YP_004548265.1	KEGG: smd:Smed_0704 hypothetical protein
YP_004548266.1	KEGG: smd:Smed_0705 hypothetical protein
YP_004548267.1	KEGG: smd:Smed_0706 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004548268.1	KEGG: smd:Smed_0707 hypothetical protein
YP_004548269.1	KEGG: smd:Smed_0708 hypothetical protein
YP_004548270.1	KEGG: smd:Smed_0709 putative signal peptide protein; TIGRFAM: Conserved hypothetical protein CHP02301; PFAM: Conserved hypothetical protein CHP02301
YP_004548271.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0710 NUDIX hydrolase
YP_004548272.1	PFAM: Protein of unknown function DUF159; KEGG: smd:Smed_0711 hypothetical protein
YP_004548273.1	KEGG: smd:Smed_0712 hypothetical protein
YP_004548274.1	TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: smd:Smed_0713 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia
YP_004548275.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0714 glutathione-dependent formaldehyde-activating GFA
YP_004548276.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0715 glutathione-dependent formaldehyde-activating GFA
YP_004548277.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_0716 glutathione-dependent formaldehyde-activating GFA
YP_004548278.1	KEGG: smd:Smed_0717 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1
YP_004548279.1	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase-related; KEGG: smd:Smed_0718 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; Pyruvate carboxyltransferase
YP_004548280.1	KEGG: smd:Smed_0719 transporter DMT superfamily protein; TIGRFAM: RarD protein; PFAM: Drug/metabolite transporter
YP_004548281.1	KEGG: smd:Smed_0720 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
YP_004548282.1	KEGG: smd:Smed_0721 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004548283.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_0722 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004548284.1	PFAM: Phosphatidylserine decarboxylase-related; TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase-related protein; KEGG: smd:Smed_0723 phosphatidylserine decarboxylase
YP_004548285.1	KEGG: smd:Smed_0724 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004548286.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0726 short-chain dehydrogenase/reductase SDR
YP_004548287.1	TIGRFAM: Amidophosphoribosyl transferase; KEGG: rhi:NGR_c08750 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase
YP_004548288.1	PFAM: Colicin V production, CvpA; KEGG: smd:Smed_0728 colicin V production protein
YP_004548289.1	KEGG: smd:Smed_0729 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core
YP_004548290.1	PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: smd:Smed_0730 alanine racemase
YP_004548291.1	KEGG: smd:Smed_0731 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004548292.1	KEGG: smd:Smed_0732 AzlC family protein; manually curated; PFAM: Branched-chain amino acid transport, permease
YP_004548293.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_0733 branched-chain amino acid transport
YP_004548294.1	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: smd:Smed_0734 replicative DNA helicase; SMART: ATPase, AAA+ type, core
YP_004548295.1	KEGG: smd:Smed_0735 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004548296.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0736 major facilitator transporter
YP_004548297.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_0737 secretion protein HlyD family protein
YP_004548298.1	TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: smd:Smed_0738 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal
YP_004548299.1	KEGG: smd:Smed_0739 hypothetical protein
YP_004548300.1	TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: smd:Smed_0740 30S ribosomal protein S18; PFAM: Ribosomal protein S18
YP_004548301.1	TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, plastid/chloroplast; KEGG: rhi:NGR_c08870 30S ribosomal protein S6; PFAM: Ribosomal protein S6
YP_004548302.1	manually curated; KEGG: smd:Smed_0742 hypothetical protein
YP_004548303.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_0743 aldo/keto reductase
YP_004548304.1	TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: rhi:NGR_c08900 malonyl-CoA:acyl carrier protein transacylase; PFAM: Acyl transferase
YP_004548305.1	KEGG: smd:Smed_0745 3-ketoacyl-(acyl-carrier-protein) reductase NodG; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004548306.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: rhi:NGR_c08920 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004548307.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: smd:Smed_0747 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal
YP_004548308.1	KEGG: smd:Smed_0748 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755
YP_004548309.1	KEGG: smd:Smed_0758 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732
YP_004548310.1	KEGG: smd:Smed_0759 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel
YP_004548311.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004548312.1	TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: smd:Smed_0760 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal
YP_004548313.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smd:Smed_0761 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
YP_004548314.1	PFAM: SurA N-terminal; KEGG: smd:Smed_0762 SurA domain-containing protein
YP_004548315.1	PFAM: Organic solvent tolerance protein, C-terminal; KEGG: smd:Smed_0763 organic solvent tolerance protein
YP_004548316.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: smd:Smed_0764 permease YjgP/YjgQ family protein
YP_004548317.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: smd:Smed_0765 permease YjgP/YjgQ family protein
YP_004548318.1	HAMAP: Peptidase, M17, probable cytosol aminopeptidase; KEGG: smd:Smed_0766 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal
YP_004548319.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: smd:Smed_0767 DNA polymerase III subunit chi
YP_004548320.1	KEGG: smd:Smed_0768 galactose 1-dehydrogenase; PFAM: Oxidoreductase, N-terminal
YP_004548321.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0769 GCN5-related N-acetyltransferase
YP_004548322.1	KEGG: smd:Smed_0770 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004548323.1	KEGG: smd:Smed_0771 hypothetical protein
YP_004548324.1	PFAM: AMP-dependent synthetase/ligase; KEGG: smd:Smed_0772 AMP-dependent synthetase and ligase
YP_004548325.1	PFAM: DinB; KEGG: smd:Smed_0773 DinB family protein
YP_004548326.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c09120 putative lignin beta-ether hydrolase
YP_004548327.1	SMART: Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; KEGG: smd:Smed_0775 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_004548328.1	KEGG: smd:Smed_0776 hypothetical protein
YP_004548329.1	KEGG: smd:Smed_0777 hypothetical protein
YP_004548330.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0778 inner-membrane translocator
YP_004548331.1	PFAM: Molybdopterin biosynthesis MoaE; KEGG: smd:Smed_0779 molybdopterin biosynthesis MoaE protein
YP_004548332.1	KEGG: smd:Smed_0780 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS
YP_004548333.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: rhi:NGR_c09190 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004548334.1	TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: smd:Smed_0782 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1
YP_004548335.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_0783 short chain dehydrogenase
YP_004548336.1	KEGG: smd:Smed_0784 porin
YP_004548337.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c09230 glutathione S-transferase-like protein
YP_004548338.1	PFAM: Ribonuclease T2; KEGG: smd:Smed_0786 ribonuclease T2
YP_004548339.1	KEGG: smd:Smed_0787 putative signal peptide protein
YP_004548340.1	PFAM: Protein of unknown function DUF519; KEGG: smd:Smed_0788 hypothetical protein
YP_004548341.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: smd:Smed_0789 nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004548342.1	KEGG: smd:Smed_0790 NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain
YP_004548343.1	PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: rhi:NGR_c09290 lysyl-tRNA synthetase 2
YP_004548344.1	PFAM: Bacterial virulence; KEGG: rhi:NGR_c09300 putative acid tolerance protein
YP_004548345.1	TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: smd:Smed_0791 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal
YP_004548346.1	TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: rhi:NGR_c09330 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_004548347.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_0793 hypothetical protein
YP_004548348.1	KEGG: smd:Smed_0794 hypothetical protein
YP_004548349.1	PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: smd:Smed_0795 polyphosphate kinase
YP_004548350.1	KEGG: smd:Smed_0796 Ppx/GppA phosphatase; TIGRFAM: Exopolyphosphatase; PFAM: Ppx/GppA phosphatase
YP_004548351.1	KEGG: smd:Smed_0797 putative signal peptide protein
YP_004548352.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_0798 putative adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004548353.1	SMART: 3'-5' exonuclease; TIGRFAM: Ribonuclease D; KEGG: smd:Smed_0799 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain
YP_004548354.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Multicopper oxidase, type 1; KEGG: smd:Smed_0800 multicopper oxidase type 3
YP_004548355.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0801 major facilitator transporter
YP_004548357.1	TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: smd:Smed_0802 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain
YP_004548358.1	KEGG: bbt:BBta_6071 putative rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004548359.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_0804 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004548360.1	KEGG: smd:Smed_0805 hypothetical protein
YP_004548361.1	KEGG: smd:Smed_0806 hypothetical protein
YP_004548362.1	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: smd:Smed_0807 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
YP_004548363.1	KEGG: smd:Smed_0808 regulatory protein ArsR; manually curated; SMART: HTH transcriptional regulator, ArsR
YP_004548364.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0809 hypothetical protein
YP_004548365.1	KEGG: smd:Smed_0810 arginyl-tRNA-protein transferase; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal
YP_004548366.1	PFAM: RDD; KEGG: smd:Smed_0811 RDD domain-containing protein
YP_004548367.1	KEGG: smd:Smed_0812 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase
YP_004548368.1	KEGG: smd:Smed_0813 hypothetical protein
YP_004548369.1	KEGG: smd:Smed_0814 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004548370.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_0815 peptidoglycan binding domain-containing protein
YP_004548371.1	KEGG: rhi:NGR_c09570 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004548372.1	TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Ribonucleotide reductase regulator NrdR-like; KEGG: smd:Smed_0817 transcriptional regulator NrdR; PFAM: ATP-cone
YP_004548373.1	TIGRFAM: Riboflavin biosynthesis protein RibD; KEGG: smd:Smed_0818 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal
YP_004548374.1	TIGRFAM: Lumazine-binding protein; KEGG: smd:Smed_0819 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein
YP_004548375.1	KEGG: rhi:NGR_c09610 hypothetical protein
YP_004548376.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0820 GCN5-related N-acetyltransferase
YP_004548377.1	PFAM: Cupin 2, conserved barrel; KEGG: rhi:NGR_c09630 hypothetical protein
YP_004548378.1	PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: smd:Smed_0821 6,7-dimethyl-8-ribityllumazine synthase
YP_004548379.1	TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: smd:Smed_0822 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44
YP_004548380.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0823 major facilitator transporter
YP_004548381.1	TIGRFAM: Pyrophosphate-energised proton pump; KEGG: smd:Smed_0824 membrane-bound proton-translocating pyrophosphatase; PFAM: Pyrophosphate-energised proton pump
YP_004548382.1	PFAM: Lipoprotein SmpA/OmlA; KEGG: smd:Smed_0825 SmpA/OmlA domain-containing protein
YP_004548383.1	PFAM: Ubiquinol-cytochrome c chaperone/UPF0174; KEGG: smd:Smed_0826 ubiquinol-cytochrome c chaperone
YP_004548384.1	PFAM: Protein of unknown function DUF177; KEGG: smd:Smed_0827 hypothetical protein
YP_004548385.1	TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; HAMAP: Phospholipid biosynthesis protein, PlsX-like; KEGG: smd:Smed_0828 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein
YP_004548386.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: smd:Smed_0829 3-oxoacyl-(acyl carrier protein) synthase III
YP_004548387.1	SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: smd:Smed_0830 integration host factor subunit alpha; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein
YP_004548388.1	KEGG: smd:Smed_0831 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004548389.1	KEGG: smd:Smed_0832 hypothetical protein
YP_004548390.1	KEGG: smd:Smed_4828 hypothetical protein
YP_004548391.1	KEGG: smd:Smed_1377 putative signal peptide protein
YP_004548392.1	KEGG: smd:Smed_5716 hypothetical protein
YP_004548393.1	PFAM: Glycosyl transferase, group 1; KEGG: ara:Arad_1791 glycosyltransferase protein
YP_004548394.1	KEGG: smd:Smed_0850 hypothetical protein
YP_004548395.1	TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: smd:Smed_0851 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_004548396.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_0852 glycosyl transferase group 1
YP_004548397.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_0853 polysaccharide export protein
YP_004548398.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_0854 exopolysaccharide transport protein family
YP_004548399.1	KEGG: smd:Smed_0855 hypothetical protein
YP_004548400.1	KEGG: rhi:NGR_c10150 streptogramin A acetyl transferase
YP_004548401.1	PFAM: Protein of unknown function DUF2842; KEGG: smd:Smed_0857 putative signal peptide protein
YP_004548402.1	PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: smd:Smed_0858 cytochrome oxidase assembly
YP_004548403.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; KEGG: smd:Smed_0859 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding
YP_004548404.1	TIGRFAM: Putative agmatinase; KEGG: rhi:NGR_c10200 agmatinase; PFAM: Ureohydrolase
YP_004548405.1	PFAM: Ribosomal protein S9; KEGG: smd:Smed_0861 30S ribosomal protein S9
YP_004548406.1	KEGG: smd:Smed_0862 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13
YP_004548407.1	KEGG: smd:Smed_0863 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004548408.1	PFAM: Crotonase, core; KEGG: smd:Smed_0864 enoyl-CoA hydratase
YP_004548409.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_0865 hypothetical protein
YP_004548410.1	KEGG: smd:Smed_0866 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding
YP_004548411.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: smd:Smed_0867 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004548412.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: smd:Smed_0868 protein of unknown function DUF861 cupin_3
YP_004548413.1	KEGG: rlt:Rleg2_0802 hypothetical protein
YP_004548414.1	PFAM: Cytochrome P450; KEGG: smd:Smed_0869 cytochrome P450
YP_004548415.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_0870 endonuclease/exonuclease/phosphatase
YP_004548416.1	SMART: Phospholipase D/Transphosphatidylase; KEGG: smd:Smed_0871 phospholipase D/transphosphatidylase
YP_004548417.1	PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_0872 ATP-dependent Clp protease proteolytic subunit
YP_004548418.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: smd:Smed_0873 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal
YP_004548419.1	SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: smd:Smed_0874 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core
YP_004548420.1	KEGG: smd:Smed_0875 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004548421.1	KEGG: smd:Smed_0876 hypothetical protein
YP_004548422.1	KEGG: smd:Smed_0877 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004548423.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_0878 metallophosphoesterase
YP_004548424.1	KEGG: smd:Smed_0879 hypothetical protein
YP_004548425.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_0880 cupin 2 domain-containing protein
YP_004548426.1	KEGG: smd:Smed_0888 NADH dehydrogenase subunit A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004548427.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: rhi:NGR_c10490 NADH dehydrogenase subunit B
YP_004548428.1	TIGRFAM: NADH dehydrogenase, subunit C; KEGG: smd:Smed_0890 NADH dehydrogenase subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit
YP_004548429.1	PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, subunit D; HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: smd:Smed_0891 NADH dehydrogenase subunit D
YP_004548430.1	KEGG: smd:Smed_0892 putative signal peptide protein
YP_004548431.1	TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_0893 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_004548432.1	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: smd:Smed_0894 NADH dehydrogenase I subunit F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004548433.1	KEGG: smd:Smed_0895 putative NADH dehydrogenase I chain E
YP_004548434.1	SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: smd:Smed_0896 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; NADH-quinone oxidoreductase, chain G, C-terminal; Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding
YP_004548435.1	KEGG: smd:Smed_0897 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_004548436.1	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: smd:Smed_0898 NADH dehydrogenase subunit I
YP_004548437.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: smd:Smed_0899 NADH dehydrogenase subunit J
YP_004548438.1	KEGG: rhi:NGR_c10600 NADH dehydrogenase subunit K; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_004548439.1	TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: smd:Smed_0901 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; NADH dehydrogenase subunit 5, C-terminal
YP_004548440.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: smd:Smed_0902 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004548441.1	TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: smd:Smed_0903 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004548442.1	KEGG: smd:Smed_0904 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal
YP_004548443.1	KEGG: smd:Smed_0905 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like
YP_004548444.1	TIGRFAM: Methylmalonyl-CoA epimerase; KEGG: smd:Smed_0906 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004548445.1	PFAM: Protein of unknown function DUF1467; KEGG: smd:Smed_0907 hypothetical protein
YP_004548446.1	KEGG: pgn:PGN_1387 putative ABC transporter permease protein
YP_004548447.1	TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: smd:Smed_0918 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding
YP_004548448.1	KEGG: smd:Smed_0919 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease
YP_004548449.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0920 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004548450.1	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: smd:Smed_0921 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic acid binding, OB-fold, tRNA/helicase-type; PHP, C-terminal
YP_004548451.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_0922 hypothetical protein
YP_004548452.1	KEGG: smd:Smed_0923 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004548453.1	KEGG: smd:Smed_0924 hypothetical protein
YP_004548454.1	KEGG: rhi:NGR_c10790 putative response regulator in two-component regulatory system; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004548455.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: smd:Smed_0926 response regulator PleD; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain
YP_004548456.1	TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: smd:Smed_0927 50S ribosomal protein L33; PFAM: Ribosomal protein L33
YP_004548457.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_0928 major facilitator transporter
YP_004548458.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_0929 NUDIX hydrolase
YP_004548459.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_0930 hypothetical protein
YP_004548460.1	SMART: Ribonuclease II/R; RNA-binding domain, S1; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; KEGG: smd:Smed_0931 ribonuclease R; PFAM: Ribonuclease II/R; Ribosomal protein S1, RNA-binding domain
YP_004548461.1	SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: smd:Smed_0932 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger
YP_004548462.1	KEGG: smd:Smed_0933 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A
YP_004548463.1	KEGG: smd:Smed_0934 putative glycerol-3-phosphate acyltransferase PlsY; TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; PFAM: Glycerol-3-phosphate acyltransferase, bacteria
YP_004548464.1	KEGG: smd:Smed_0935 dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase 1
YP_004548465.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: smd:Smed_0936 aspartate carbamoyltransferase catalytic subunit
YP_004548466.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: smd:Smed_0937 acyl-CoA dehydrogenase domain-containing protein
YP_004548467.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_0938 auxin efflux carrier
YP_004548468.1	KEGG: smd:Smed_0940 hypothetical protein
YP_004548469.1	TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: smd:Smed_0941 Holliday junction resolvase-like protein; SMART: Resolvase, RNase H-like fold
YP_004548470.1	KEGG: smd:Smed_0942 metal-dependent hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004548471.1	TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; KEGG: rhi:NGR_c10950 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit
YP_004548472.1	KEGG: smd:Smed_0944 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase
YP_004548473.1	KEGG: rhi:NGR_c10980 hypothetical protein; HAMAP: Protein of unknown function DUF2084; PFAM: Protein of unknown function DUF2084
YP_004548474.1	SMART: Asn/Gln amidotransferase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: smd:Smed_0946 aspartyl/glutamyl-tRNA amidotransferase subunit B; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase
YP_004548475.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_0947 GCN5-related N-acetyltransferase
YP_004548476.1	PFAM: NADH:ubiquinone oxidoreductase, 17.2kDa subunit; KEGG: smd:Smed_0948 NADH dehydrogenase
YP_004548477.1	PFAM: Protein of unknown function DUF2155; KEGG: smd:Smed_0949 hypothetical protein
YP_004548478.1	PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: smd:Smed_0951 leucyl/phenylalanyl-tRNA--protein transferase
YP_004548479.1	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: smd:Smed_0952 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal
YP_004548480.1	KEGG: smd:Smed_0953 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment
YP_004548481.1	TIGRFAM: Dehydroquinase, class II; KEGG: smd:Smed_0954 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II
YP_004548482.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_0955 DsbA oxidoreductase
YP_004548483.1	KEGG: rhi:NGR_c11110 aspartate transaminase protein; PFAM: Aminotransferase, class I/classII
YP_004548484.1	KEGG: rhi:NGR_b15470 hypothetical protein
YP_004548485.1	TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: smd:Smed_0957 ribonuclease; SMART: RNA-binding domain, S1
YP_004548486.1	PFAM: Cell wall hydrolase/autolysin, catalytic; Localisation of periplasmic protein complexes; KEGG: smd:Smed_0959 N-acetylmuramoyl-L-alanine amidase; SMART: Cell wall hydrolase/autolysin, catalytic
YP_004548487.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: smd:Smed_0960 1A family penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004548488.1	manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_004548489.1	KEGG: smd:Smed_0962 hypothetical protein
YP_004548490.1	HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: smd:Smed_0963 inorganic polyphosphate/ATP-NAD kinase; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted
YP_004548491.1	KEGG: avi:Avi_1035 hypothetical protein
YP_004548492.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0965 LysR family transcriptional regulator
YP_004548493.1	PFAM: Flavodoxin-like fold; KEGG: smd:Smed_0966 NAD(P)H dehydrogenase (quinone)
YP_004548494.1	KEGG: smd:Smed_0967 hypothetical protein
YP_004548495.1	TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: smd:Smed_0968 RNA methyltransferase; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_004548496.1	KEGG: smd:Smed_0984 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_004548497.1	KEGG: smd:Smed_0970 hypothetical protein
YP_004548498.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_0971 NAD-dependent epimerase/dehydratase
YP_004548499.1	KEGG: smd:Smed_0972 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein
YP_004548500.1	TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: smd:Smed_0973 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW
YP_004548501.1	TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: rhi:NGR_c11780 50S ribosomal protein L11; SMART: Ribosomal protein L11
YP_004548502.1	KEGG: smd:Smed_0975 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1
YP_004548503.1	KEGG: smd:Smed_0976 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0
YP_004548504.1	TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: smd:Smed_0977 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal
YP_004548505.1	TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: smd:Smed_0978 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7
YP_004548506.1	SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: smd:Smed_0979 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5
YP_004548507.1	KEGG: smd:Smed_0980 hypothetical protein
YP_004548509.1	KEGG: avi:Avi_1833 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23
YP_004548510.1	KEGG: smd:Smed_0982 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7
YP_004548511.1	TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; KEGG: rhi:NGR_c11880 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_004548512.1	KEGG: smd:Smed_0984 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_004548513.1	TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: rhi:NGR_c11900 30S ribosomal protein S10; PFAM: Ribosomal protein S10
YP_004548514.1	KEGG: smd:Smed_0986 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3
YP_004548515.1	PFAM: Ribosomal protein L4/L1e; KEGG: smd:Smed_0987 50S ribosomal protein L4
YP_004548516.1	PFAM: Ribosomal protein L25/L23; KEGG: smd:Smed_0988 50S ribosomal protein L23
YP_004548517.1	KEGG: smd:Smed_0989 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain
YP_004548518.1	KEGG: bmr:BMI_I1240 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15
YP_004548519.1	KEGG: smd:Smed_0991 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17
YP_004548520.1	TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: smd:Smed_0992 30S ribosomal protein S3; SMART: K Homology
YP_004548521.1	TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: rhi:NGR_c11980 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_004548522.1	KEGG: ara:Arad_1982 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29
YP_004548523.1	KEGG: smd:Smed_0995 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17
YP_004548524.1	KEGG: smd:Smed_0996 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e
YP_004548525.1	TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: smd:Smed_0997 50S ribosomal protein L24; SMART: KOW
YP_004548526.1	PFAM: Ribosomal protein L5; KEGG: smd:Smed_0998 50S ribosomal protein L5
YP_004548527.1	KEGG: smd:Smed_0999 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14
YP_004548528.1	PFAM: Ribosomal protein S8; KEGG: rhi:NGR_c12050 30S ribosomal protein S8
YP_004548529.1	KEGG: smd:Smed_1001 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain
YP_004548530.1	KEGG: smd:Smed_1002 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5
YP_004548531.1	KEGG: smd:Smed_1003 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal
YP_004548532.1	KEGG: smd:Smed_1004 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain
YP_004548533.1	TIGRFAM: Ribosomal protein L15, bacterial-type; KEGG: smd:Smed_1005 50S ribosomal protein L15
YP_004548534.1	KEGG: smd:Smed_1006 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein
YP_004548535.1	TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: smd:Smed_1007 adenylate kinase; PFAM: Adenylate kinase
YP_004548536.1	KEGG: smd:Smed_1008 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13
YP_004548537.1	KEGG: rhi:NGR_c12130 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11
YP_004548538.1	SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: smd:Smed_1010 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal
YP_004548539.1	TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: rhi:NGR_c12150 50S ribosomal protein L17; PFAM: Ribosomal protein L17
YP_004548540.1	PFAM: Flavoprotein transmembrane component; KEGG: smd:Smed_1012 putative sulfite oxidase subunit YedZ
YP_004548541.1	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: smd:Smed_1013 putative sulfite oxidase subunit YedY
YP_004548542.1	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: smd:Smed_1014 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF
YP_004548543.1	KEGG: smd:Smed_1015 recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C-terminal; ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core
YP_004548544.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1016 small multidrug resistance protein
YP_004548545.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004548546.1	PFAM: ATP12, ATPase F1F0-assembly protein; KEGG: smd:Smed_1017 ATP12 ATPase
YP_004548547.1	KEGG: smd:Smed_1018 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004548548.1	KEGG: smd:Smed_1019 RluA family pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; Peptidoglycan-binding lysin domain
YP_004548549.1	KEGG: smd:Smed_1020 camphor resistance protein CrcB; TIGRFAM: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein
YP_004548550.1	TIGRFAM: S-formylglutathione hydrolase; KEGG: smd:Smed_1021 S-formylglutathione hydrolase; PFAM: Putative esterase
YP_004548551.1	PFAM: Protein of unknown function DUF1345; KEGG: smd:Smed_1022 hypothetical protein
YP_004548552.1	KEGG: smd:Smed_1023 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188
YP_004548553.1	KEGG: smd:Smed_1024 S-(hydroxymethyl)glutathione dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004548554.1	KEGG: smd:Smed_1025 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004548555.1	PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: smd:Smed_1026 lipoate-protein ligase B
YP_004548556.1	KEGG: smd:Smed_1027 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA
YP_004548557.1	KEGG: smd:Smed_1028 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229
YP_004548558.1	PFAM: Sporulation stage V, protein R; KEGG: smd:Smed_1029 SpoVR family protein
YP_004548559.1	KEGG: dze:Dd1591_0875 gamma-glutamyltransferase
YP_004548560.1	KEGG: smd:Smed_1030 hypothetical protein
YP_004548561.1	KEGG: smd:Smed_1031 hypothetical protein
YP_004548562.1	KEGG: smd:Smed_1032 peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Formylmethionine deformylase
YP_004548563.1	TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; MgtE magnesium transporter, integral membrane; KEGG: smd:Smed_1033 magnesium transporter; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core
YP_004548564.1	KEGG: smd:Smed_1034 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004548565.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rhi:NGR_c12410 hypothetical protein
YP_004548566.1	PFAM: Protein of unknown function DUF1624; KEGG: smd:Smed_1035 hypothetical protein
YP_004548567.1	PFAM: Protein of unknown function DUF599; KEGG: smd:Smed_1036 hypothetical protein
YP_004548568.1	KEGG: oan:Oant_2015 hypothetical protein
YP_004548569.1	TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: rhi:NGR_c12440 L-serine dehydratase; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain
YP_004548570.1	PFAM: Uncharacterised conserved protein UCP032025; KEGG: rhi:NGR_c12450 hypothetical protein
YP_004548571.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004548572.1	KEGG: smd:Smed_1039 hypothetical protein
YP_004548573.1	KEGG: smd:Smed_1040 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Sporulation-related domain
YP_004548574.1	KEGG: smd:Smed_1041 hypothetical protein
YP_004548575.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_1042 transglutaminase family protein cysteine peptidase BTLCP
YP_004548576.1	KEGG: atu:Atu0976 CycL protein
YP_004548577.1	PFAM: Type IV pilus assembly PilZ; KEGG: smd:Smed_1043 type IV pilus assembly PilZ
YP_004548578.1	PFAM: Protein of unknown function DUF1457; KEGG: smd:Smed_1044 hypothetical protein
YP_004548579.1	PFAM: Peptidase S54, rhomboid domain; KEGG: smd:Smed_1045 rhomboid family protein
YP_004548580.1	KEGG: smd:Smed_1046 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004548581.1	PFAM: Patatin/Phospholipase A2-related; KEGG: smd:Smed_1047 patatin
YP_004548582.1	HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: rhi:NGR_c12560 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase
YP_004548583.1	PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: smd:Smed_1049 GTP cyclohydrolase I
YP_004548584.1	PFAM: NIF system FeS cluster assembly, NifU, N-terminal; KEGG: rhi:NGR_c12580 possible nitrogen-fixing NifU-like protein
YP_004548585.1	TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: smd:Smed_1051 hypothetical protein; PFAM: Protein of unknown function DUF37
YP_004548586.1	KEGG: rhi:NGR_c12590 hypothetical protein
YP_004548587.1	PFAM: Protein of unknown function DUF1697; KEGG: smd:Smed_1053 hypothetical protein
YP_004548588.1	TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: smd:Smed_1054 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004548589.1	KEGG: smd:Smed_1055 hypothetical protein
YP_004548590.1	PFAM: Nitroreductase-like; KEGG: smd:Smed_1056 nitroreductase
YP_004548591.1	KEGG: smd:Smed_1057 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004548592.1	PFAM: Aldehyde-lyase domain; KEGG: smd:Smed_1058 HpcH/HpaI aldolase
YP_004548593.1	KEGG: smd:Smed_1059 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2336
YP_004548594.1	KEGG: smd:Smed_1060 hypothetical protein
YP_004548595.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1061 GCN5-related N-acetyltransferase
YP_004548596.1	SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: smd:Smed_1062 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal
YP_004548597.1	manually curated; KEGG: smd:Smed_1063 hypothetical protein
YP_004548598.1	PFAM: FAD linked oxidase, N-terminal; KEGG: smd:Smed_1064 FAD linked oxidase domain-containing protein
YP_004548599.1	KEGG: smd:Smed_1065 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_004548600.1	PFAM: Cytochrome b/b6, N-terminal; KEGG: smd:Smed_1066 cytochrome b561
YP_004548601.1	TIGRFAM: Triosephosphate isomerase; KEGG: smd:Smed_1067 triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_004548602.1	KEGG: smd:Smed_1068 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_004548603.1	PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: smd:Smed_1069 CTP synthetase
YP_004548604.1	KEGG: smd:Smed_1070 hypothetical protein
YP_004548605.1	PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: smd:Smed_1071 2-dehydro-3-deoxyphosphooctonate aldolase
YP_004548606.1	TIGRFAM: Enolase; KEGG: smd:Smed_1072 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal
YP_004548607.1	PFAM: Septum formation initiator; KEGG: smd:Smed_1075 septum formation initiator
YP_004548608.1	TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; KEGG: smd:Smed_1076 dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component
YP_004548609.1	KEGG: smd:Smed_1077 pyruvate dehydrogenase subunit beta; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Biotin/lipoyl attachment; SMART: Transketolase-like, pyrimidine-binding domain
YP_004548610.1	TIGRFAM: Dihydrolipoamide acetyltransferase, long form; KEGG: smd:Smed_1078 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004548611.1	PFAM: Lipase, GDSL; KEGG: smd:Smed_1079 GDSL family lipase
YP_004548612.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1080 GCN5-related N-acetyltransferase
YP_004548613.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_1081 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004548614.1	PFAM: Transglycosylase-associated protein; KEGG: rhi:NGR_c12890 putative transmembrane protein
YP_004548615.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: smd:Smed_1083 lipoyl synthase; PFAM: Radical SAM
YP_004548616.1	KEGG: ath:AT3G15820 phosphatidic acid phosphatase-related / PAP2-related
YP_004548617.1	PFAM: Streptomyces cyclase/dehydrase; KEGG: smd:Smed_1085 cyclase/dehydrase
YP_004548618.1	KEGG: smd:Smed_1086 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal
YP_004548619.1	KEGG: smd:Smed_1087 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_004548620.1	KEGG: smd:Smed_1088 nifR3 family TIM-barrel protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase
YP_004548621.1	KEGG: smd:Smed_1089 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS
YP_004548622.1	TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: smd:Smed_1090 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_004548623.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_1091 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004548624.1	KEGG: smd:Smed_1092 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_004548625.1	PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: smd:Smed_1093 potassium transporter peripheral membrane component
YP_004548626.1	KEGG: smd:Smed_1094 D-amino acid aminotransferase; PFAM: Aminotransferase, class IV
YP_004548627.1	TIGRFAM: Host factor Hfq; HAMAP: Host factor Hfq; KEGG: rhi:NGR_c13010 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain
YP_004548628.1	KEGG: smd:Smed_1096 GTP-binding protein HSR1-related; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related
YP_004548629.1	KEGG: atu:Atu0976 CycL protein
YP_004548630.1	KEGG: smd:Smed_1097 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core
YP_004548631.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: smd:Smed_1098 CMP/dCMP deaminase zinc-binding
YP_004548632.1	KEGG: smd:Smed_1099 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain
YP_004548633.1	KEGG: smd:Smed_1100 hypothetical protein
YP_004548634.1	KEGG: smd:Smed_1101 nitrite/sulfite reductase hemoprotein beta subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004548635.1	PFAM: Uncharacterised conserved protein UCP030820; KEGG: smd:Smed_1102 hypothetical protein
YP_004548636.1	KEGG: rhi:NGR_c13090 putative NADPH:ferredoxin reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding
YP_004548637.1	KEGG: vcn:VOLCADRAFT_98119 hypothetical protein
YP_004548638.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_004548639.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_c13140 putative ATP-binding component of a transport system; SMART: ATPase, AAA+ type, core
YP_004548640.1	KEGG: smd:Smed_1106 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004548641.1	KEGG: smd:Smed_6438 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004548642.1	TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_1108 cationic amino acid ABC transporter, periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3
YP_004548643.1	TIGRFAM: Cystathionine beta-lyase, bacterial; KEGG: smd:Smed_1109 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004548644.1	PFAM: Monooxygenase, FAD-binding; KEGG: smd:Smed_1110 monooxygenase FAD-binding
YP_004548645.1	KEGG: smd:Smed_1111 hypothetical protein
YP_004548646.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1112 alpha/beta hydrolase fold
YP_004548647.1	SMART: Serine acetyltransferase, N-terminal; TIGRFAM: Serine O-acetyltransferase; KEGG: smd:Smed_1113 serine O-acetyltransferase; PFAM: Serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide repeat
YP_004548648.1	KEGG: smd:Smed_1114 hypothetical protein
YP_004548649.1	KEGG: smd:Smed_1115 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin
YP_004548650.1	KEGG: rhi:NGR_c13250 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_004548651.1	TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: smd:Smed_1117 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core
YP_004548652.1	PFAM: Branched-chain amino acid transport, permease; KEGG: smd:Smed_1118 AzlC family protein
YP_004548653.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_1119 hypothetical protein
YP_004548654.1	PFAM: Histidine triad (HIT) protein; KEGG: rhi:NGR_c13290 HIT family protein
YP_004548655.1	PFAM: Protein of unknown function DUF482; KEGG: smd:Smed_1121 hypothetical protein
YP_004548656.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_1122 glycerophosphoryl diester phosphodiesterase
YP_004548657.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_1123 endoribonuclease L-PSP
YP_004548658.1	PFAM: Protein of unknown function DUF1849; KEGG: smd:Smed_1124 hypothetical protein
YP_004548659.1	KEGG: smd:Smed_1131 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2
YP_004548660.1	TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Translation elongation factor EFTs/EF1B; KEGG: smd:Smed_1132 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal
YP_004548661.1	TIGRFAM: Uridylate kinase, bacteria; KEGG: smd:Smed_1133 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004548662.1	TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: smd:Smed_1134 ribosome recycling factor; PFAM: Ribosome recycling factor
YP_004548663.1	TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: smd:Smed_1135 undecaprenyl pyrophosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like
YP_004548664.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: smd:Smed_1136 phosphatidate cytidylyltransferase
YP_004548665.1	TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: smd:Smed_1137 putative membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF
YP_004548666.1	KEGG: smd:Smed_1138 surface antigen (D15); TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number
YP_004548667.1	KEGG: smd:Smed_1139 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat
YP_004548668.1	TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; KEGG: rhi:NGR_c13430 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
YP_004548669.1	TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: smd:Smed_1141 UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_004548670.1	PFAM: Protein of unknown function DUF1009; KEGG: smd:Smed_1142 hypothetical protein
YP_004548671.1	TIGRFAM: Glycosyl transferase, family 19; KEGG: smd:Smed_1143 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19
YP_004548672.1	KEGG: smd:Smed_1144 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like
YP_004548673.1	KEGG: smd:Smed_1145 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein
YP_004548674.1	KEGG: smd:Smed_1146 TonB-system energizer ExbB type-1; TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel
YP_004548675.1	KEGG: smd:Smed_1147 TonB system transport protein ExbD type-1; TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR
YP_004548676.1	KEGG: smd:Smed_1148 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004548677.1	KEGG: smd:Smed_1149 TolC family type I secretion outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein
YP_004548678.1	PFAM: Protein of unknown function DUF2497; KEGG: smd:Smed_1150 hypothetical protein
YP_004548679.1	TIGRFAM: Valyl-tRNA synthetase; KEGG: smd:Smed_1151 valyl-tRNA synthetase
YP_004548680.1	PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: smd:Smed_1152 aromatic hydrocarbon degradation membrane protein
YP_004548681.1	PFAM: Sel1-like; KEGG: smd:Smed_1153 Sel1 domain-containing protein
YP_004548682.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: smd:Smed_1154 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_004548683.1	KEGG: smd:Smed_1155 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase
YP_004548684.1	KEGG: smd:Smed_1156 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004548685.1	SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; Uncharacterised protein family HDIG; KEGG: smd:Smed_1157 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain
YP_004548686.1	TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: smd:Smed_1158 arginyl-tRNA synthetase
YP_004548687.1	PFAM: Sporulation-related domain; KEGG: smd:Smed_1159 sporulation domain-containing protein
YP_004548688.1	PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: smd:Smed_1160 beta-N-acetylhexosaminidase
YP_004548689.1	PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: smd:Smed_1161 chromosome segregation and condensation protein ScpA
YP_004548690.1	KEGG: smd:Smed_1162 putative transcriptional regulator; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote
YP_004548691.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1163 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004548692.1	TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: smd:Smed_1164 twin arginine translocase protein A; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004548693.1	KEGG: smd:Smed_1165 sec-independent translocase; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004548694.1	KEGG: smd:Smed_1166 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase
YP_004548695.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: smd:Smed_1167 seryl-tRNA synthetase
YP_004548696.1	KEGG: smd:Smed_1168 stationary phase survival protein SurE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE-like phosphatase/nucleotidase
YP_004548697.1	manually curated; KEGG: smd:Smed_1169 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004548698.1	KEGG: smd:Smed_1170 biotin-regulated protein
YP_004548699.1	KEGG: smd:Smed_1171 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004548700.1	PFAM: Domain of unknown function DUF815; KEGG: smd:Smed_1172 hypothetical protein
YP_004548701.1	KEGG: smd:Smed_1173 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC
YP_004548702.1	KEGG: smd:Smed_1174 bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: SecD export membrane protein; SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_004548703.1	KEGG: smd:Smed_1175 hypothetical protein; manually curated; PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
YP_004548704.1	PFAM: Squalene/phytoene synthase; KEGG: smd:Smed_1176 putative phytoene synthase protein
YP_004548705.1	KEGG: smd:Smed_1177 hypothetical protein
YP_004548706.1	TIGRFAM: Folate-dependent ribothymidyl synthase; KEGG: smd:Smed_1178 tRNA (uracil-5-)-methyltransferase Gid; PFAM: Glucose-inhibited division protein A-related
YP_004548707.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_1179 hypothetical protein
YP_004548708.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_1180 hypothetical protein
YP_004548709.1	KEGG: ppa:PAS_chr3_0181 Mitochondrial malic enzyme
YP_004548710.1	KEGG: smd:Smed_1181 trigger factor; TIGRFAM: Trigger factor; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_004548711.1	KEGG: smd:Smed_1182 glycine dehydrogenase; TIGRFAM: Glycine cleavage system P protein, homodimeric; PFAM: Glycine cleavage system P-protein, N-terminal
YP_004548712.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: smd:Smed_1183 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein
YP_004548713.1	TIGRFAM: Glycine cleavage system T protein; KEGG: smd:Smed_1184 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004548714.1	PFAM: Integrase, catalytic core, phage; KEGG: mlo:mll5763 symbiosis island integrase
YP_004548715.1	KEGG: bmj:BMULJ_04670 bacteriophage protein
YP_004548716.1	PFAM: Prophage CP4-57 regulatory; KEGG: asa:ASA_2928 prophage regulatory protein
YP_004548717.1	KEGG: sgr:SGR_2222 putative lon class III heat-shock ATP-dependent protease
YP_004548718.1	PFAM: Phage terminase GpA; KEGG: seh:SeHA_C1140 phage terminase large subunit
YP_004548719.1	PFAM: Head-to-tail joining protein W, gpW; KEGG: ssn:SSON_2429 putative head-tail joining protein of prophage
YP_004548720.1	KEGG: hch:HCH_02895 lambda family phage portal protein; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda
YP_004548721.1	PFAM: Peptidase S49; KEGG: mno:Mnod_0595 peptidase S49
YP_004548722.1	PFAM: Bacteriophage lambda head decoration protein D, HDPD; KEGG: cwo:Cwoe_3830 KDPG and KHG aldolase
YP_004548723.1	PFAM: Phage major capsid protein E; KEGG: smd:Smed_1654 phage major capsid protein E
YP_004548724.1	KEGG: vcn:VOLCADRAFT_96032 hypothetical protein
YP_004548725.1	KEGG: rva:Rvan_2770 hypothetical protein
YP_004548726.1	KEGG: nhl:Nhal_1002 hypothetical protein
YP_004548727.1	KEGG: dac:Daci_3442 hypothetical protein
YP_004548728.1	KEGG: hth:HTH_0895 hypothetical protein
YP_004548729.1	KEGG: mmr:Mmar10_2659 TetR family transcriptional regulator
YP_004548730.1	TIGRFAM: Tape measure domain; KEGG: mfa:Mfla_2689 hypothetical protein
YP_004548731.1	KEGG: xal:XALc_0227 hypothetical phage-related protein
YP_004548732.1	manually curated; KEGG: xal:XALc_0228 hypothetical phage-related protein
YP_004548733.1	KEGG: aat:D11S_2168 conserved tail assembly protein
YP_004548734.1	KEGG: net:Neut_1456 hypothetical protein
YP_004548735.1	KEGG: pag:PLES_15931 hypothetical protein
YP_004548736.1	PFAM: Peptidoglycan binding-like; KEGG: mch:Mchl_3855 hypothetical protein
YP_004548737.1	KEGG: hth:HTH_0895 hypothetical protein
YP_004548738.1	KEGG: mes:Meso_0241 hypothetical protein
YP_004548739.1	PFAM: Methyltransferase type 12; KEGG: smd:Smed_5001 hypothetical protein
YP_004548740.1	PFAM: Capsule polysaccharide biosynthesis; Glycosyl transferase, family 8; KEGG: tgr:Tgr7_1314 capsule polysaccharide biosynthesis protein
YP_004548741.1	KEGG: dgr:Dgri_GH15663 GH15663 gene product from transcript GH15663-RA
YP_004548742.1	KEGG: bpu:BPUM_0611 hypothetical protein
YP_004548743.1	KEGG: mch:Mchl_1575 hypothetical protein
YP_004548744.1	KEGG: dha:DEHA2G19074g DEHA2G19074p
YP_004548745.1	KEGG: mca:MCA2264 CzcA family heavy metal efflux protein
YP_004548746.1	KEGG: ppa:PAS_chr4_0841 hypothetical protein
YP_004548747.1	KEGG: mea:Mex_1p3950 hypothetical protein
YP_004548748.1	KEGG: cai:Caci_7696 luciferase-like monooxygenase
YP_004548749.1	KEGG: dvi:Dvir_GJ16825 GJ16825 gene product from transcript GJ16825-RA
YP_004548750.1	KEGG: rcu:RCOM_1168970 Kinesin heavy chain, putative
YP_004548751.1	KEGG: rop:ROP_70370 putative iron-siderophore ABC transporter permease protein
YP_004548752.1	PFAM: Uncharacterised protein family UPF0335; KEGG: smd:Smed_2680 hypothetical protein
YP_004548753.1	PFAM: Phosphopantetheine-binding; KEGG: ttj:TTHA0414 acyl carrier protein
YP_004548755.1	KEGG: ere:EUBREC_2745 hypothetical protein
YP_004548756.1	KEGG: ppu:PP_1104 succinylglutamate desuccinylase/aspartoacylase
YP_004548757.1	KEGG: mau:Micau_6256 transcriptional activator domain-containing protein
YP_004548758.1	KEGG: apt:APA01_26130 two component response regulator CtrA; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_004548759.1	PFAM: Nucleoside 2-deoxyribosyltransferase; KEGG: syw:SYNW1812 hypothetical protein
YP_004548760.1	KEGG: blt:Balat_1503 putative nucleoside hydrolase protein
YP_004548761.1	PFAM: Domain of unknown function DUF550; KEGG: bpt:Bpet0946 hypothetical protein
YP_004548762.1	KEGG: pfh:PFHG_01537 hypothetical protein similar to erythrocyte binding protein
YP_004548763.1	KEGG: scb:SCAB_60631 hypothetical protein
YP_004548764.1	KEGG: fnu:FN1716 hypothetical protein
YP_004548765.1	KEGG: hiq:CGSHiGG_05035 hypothetical protein
YP_004548766.1	KEGG: oan:Oant_1483 hypothetical protein
YP_004548767.1	KEGG: xfm:Xfasm12_1706 outer membrane protein UptE precursor
YP_004548768.1	KEGG: nml:Namu_2445 hypothetical protein
YP_004548769.1	KEGG: hha:Hhal_1717 peptidase S16, lon domain-containing protein
YP_004548770.1	KEGG: dma:DMR_33050 phosphoserine phosphatase
YP_004548771.1	KEGG: hpm:HPSJM_01090 putative glycerol-3-phosphate acyltransferase PlsX
YP_004548772.1	KEGG: abb:ABBFA_001330 gamma-glutamylputrescine synthetase
YP_004548773.1	PFAM: GcrA cell cycle regulator; KEGG: rlg:Rleg_0757 hypothetical protein
YP_004548774.1	KEGG: ske:Sked_35830 hypothetical protein
YP_004548775.1	KEGG: ppw:PputW619_3319 L-serine ammonia-lyase
YP_004548776.1	KEGG: snc:HMPREF0837_12072 DpnD protein of DpnI restriction gene cassette
YP_004548777.1	KEGG: msm:MSMEG_4826 putative acyl-CoA dehydrogenase
YP_004548778.1	KEGG: cgb:cg1983 hypothetical protein
YP_004548779.1	PFAM: Methyltransferase small; KEGG: mmq:MmarC5_1266 hypothetical protein
YP_004548780.1	KEGG: cin:100176011 similar to Trit1 protein
YP_004548781.1	KEGG: rsa:RSal33209_0602 ethanolamine permease
YP_004548782.1	KEGG: osa:4327289 Os01g0314100
YP_004548783.1	KEGG: pth:PTH_1552 electron transfer flavoprotein, beta subunit
YP_004548785.1	KEGG: lbz:LbrM25_V2.1540 hypothetical protein
YP_004548786.1	KEGG: net:Neut_1262 acetolactate synthase, large subunit, biosynthetic type
YP_004548789.1	KEGG: pop:POPTR_556245 hypothetical protein
YP_004548790.1	KEGG: msl:Msil_2851 TIM-barrel protein, YjbN family
YP_004548791.1	KEGG: mno:Mnod_0602 hypothetical protein; PFAM: Primase, C-terminal 2; DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal
YP_004548792.1	KEGG: bmy:Bm1_51810 NLI interacting factor-like phosphatase family protein
YP_004548793.1	KEGG: ncr:NCU03551 hypothetical protein
YP_004548794.1	PFAM: NUMOD4; KEGG: sag:SAG1876 prophage LambdaSa2, HNH endonuclease family protein
YP_004548795.1	PFAM: Protein of unknown function DUF2800; KEGG: hde:HDEF_1661 APSE-2 prophage; hypothetical
YP_004548796.1	PFAM: Protein of unknown function DUF2815; KEGG: hde:HDEF_1660 APSE-2 prophage; hypothetical
YP_004548797.1	KEGG: eoi:ECO111_4874 putative exonuclease
YP_004548798.1	SMART: DNA-directed DNA polymerase, family B; KEGG: cth:Cthe_1735 phage DNA polymerase
YP_004548799.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mag:amb2697 deoxycytidylate deaminase
YP_004548800.1	PFAM: VRR-NUC; KEGG: xfm:Xfasm12_1483 hypothetical protein
YP_004548801.1	KEGG: efa:EF0330 SNF2 domain-containing protein; PFAM: SNF2-related; SMART: DEAD-like helicase, N-terminal
YP_004548802.1	KEGG: rva:Rvan_1213 hypothetical protein
YP_004548803.1	KEGG: smd:Smed_1185 hypothetical protein
YP_004548804.1	PFAM: DR1885-like metal-binding protein; GLE1, N-terminal, bacteria; KEGG: smd:Smed_1186 hypothetical protein
YP_004548805.1	KEGG: smd:Smed_1187 hypothetical protein
YP_004548807.1	KEGG: smd:Smed_1188 hypothetical protein
YP_004548808.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ara:Arad_12012 glutathione S-transferase protein
YP_004548809.1	TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: smd:Smed_1233 ribonucleotide-diphosphate reductase subunit alpha; PFAM: Ribonucleotide reductase class II vitamin B12-dependent; Ribonucleotide reductase large subunit, C-terminal
YP_004548810.1	PFAM: Protein of unknown function DUF72; KEGG: smd:Smed_1234 hypothetical protein
YP_004548811.1	TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: smd:Smed_1235 excinuclease ABC subunit A; PFAM: ABC transporter-like
YP_004548812.1	KEGG: smd:Smed_1236 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004548813.1	KEGG: smd:Smed_1240 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related
YP_004548814.1	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: smd:Smed_1241 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
YP_004548815.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_1242 lytic transglycosylase catalytic
YP_004548816.1	KEGG: smd:Smed_1243 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004548817.1	KEGG: smd:Smed_1244 aminoglycoside/hydroxyurea antibiotic resistance kinase; PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase
YP_004548818.1	KEGG: smd:Smed_1245 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_004548819.1	KEGG: smd:Smed_1246 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004548820.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1247 LysR family transcriptional regulator
YP_004548821.1	TIGRFAM: Thioredoxin reductase; KEGG: smd:Smed_1248 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004548822.1	KEGG: smd:Smed_1249 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004548823.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_1250 glycosyl transferase family protein
YP_004548824.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1251 phosphatidylserine decarboxylase
YP_004548825.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1252 phosphatidylserine decarboxylase
YP_004548826.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_1253 glycosyl transferase group 1
YP_004548827.1	TIGRFAM: Transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: smd:Smed_1254 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, C-terminal; Transcription elongation factor, GreA/GreB, N-terminal
YP_004548828.1	KEGG: smd:Smed_1256 hypothetical protein
YP_004548829.1	SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: smd:Smed_1257 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthase, large subunit, N-terminal
YP_004548830.1	KEGG: smd:Smed_1258 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004548831.1	PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: smd:Smed_1259 protein of unknown function zinc metallopeptidase putative
YP_004548832.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1262 major facilitator transporter
YP_004548833.1	KEGG: smd:Smed_1263 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein
YP_004548835.1	PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: smd:Smed_1264 phosphopantetheine adenylyltransferase
YP_004548836.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: smd:Smed_1265 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_004548837.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: smd:Smed_1266 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_004548838.1	KEGG: smd:Smed_1267 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein
YP_004548839.1	TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; KEGG: smd:Smed_1268 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_004548840.1	KEGG: rhi:NGR_c15860 hypothetical protein
YP_004548841.1	PFAM: Short-chain dehydrogenase/reductase SDR; SEC-C motif; KEGG: smd:Smed_1269 short-chain dehydrogenase/reductase SDR
YP_004548842.1	KEGG: smd:Smed_1270 hypothetical protein
YP_004548843.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: smd:Smed_1271 isoprenylcysteine carboxyl methyltransferase
YP_004548844.1	KEGG: smd:Smed_1272 putative lipoprotein
YP_004548845.1	KEGG: nfa:nfa29280 putative ABC transporter
YP_004548846.1	PFAM: YkuD domain; KEGG: smd:Smed_1273 ErfK/YbiS/YcfS/YnhG family protein
YP_004548847.1	KEGG: smd:Smed_1274 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004548848.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1275 major facilitator transporter
YP_004548849.1	KEGG: rhi:NGR_c15940 hypothetical protein
YP_004548850.1	PFAM: Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; KEGG: rhi:NGR_c15950 adenylate cyclase; SMART: Signal transduction response regulator, C-terminal; Tetratricopeptide repeat
YP_004548851.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: mes:Meso_1327 glutathione-dependent formaldehyde-activating, GFA
YP_004548852.1	KEGG: smd:Smed_6421 hypothetical protein
YP_004548853.1	KEGG: smd:Smed_1288 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004548854.1	KEGG: smd:Smed_1289 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related
YP_004548855.1	TIGRFAM: Methionyl-tRNA synthetase, class Ia; KEGG: smd:Smed_1290 methionyl-tRNA synthetase
YP_004548856.1	KEGG: rlg:Rleg_0637 hypothetical protein
YP_004548857.1	KEGG: smd:Smed_1291 DNA polymerase III subunit delta'
YP_004548858.1	PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: smd:Smed_1292 thymidylate kinase
YP_004548859.1	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: smd:Smed_1293 serine-type D-Ala-D-Ala carboxypeptidase; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal
YP_004548860.1	KEGG: smd:Smed_1294 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase
YP_004548861.1	KEGG: smd:Smed_4829 hypothetical protein
YP_004548862.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_004548863.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: ppg:PputGB1_3030 hypothetical protein
YP_004548864.1	PFAM: Domain of unknown function DUF1254; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Domain of unknown function DUF1214; KEGG: rme:Rmet_5000 hypothetical protein
YP_004548865.1	KEGG: smd:Smed_1352 hypothetical protein
YP_004548866.1	PFAM: Peptidase S24/S26A/S26B, conserved region; LexA, DNA-binding domain; TIGRFAM: Peptidase S24, LexA repressor; HAMAP: Peptidase S24, LexA repressor; KEGG: smd:Smed_1353 LexA repressor
YP_004548867.1	KEGG: smd:Smed_1355 putative transmembrane protein
YP_004548868.1	KEGG: smd:Smed_1356 hypothetical protein
YP_004548869.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1360 small multidrug resistance protein
YP_004548870.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_1361 small multidrug resistance protein
YP_004548871.1	KEGG: pde:Pden_3176 hypothetical protein
YP_004548872.1	TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: pde:Pden_3177 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted
YP_004548873.1	KEGG: smd:Smed_1362 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004548874.1	KEGG: smd:Smed_1363 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004548875.1	KEGG: smd:Smed_1364 threonyl/alanyl tRNA synthetase SAD; PFAM: Threonyl/alanyl tRNA synthetase, SAD; Alanyl-tRNA synthetase, class IIc, N-terminal; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004548876.1	PFAM: Rhodanese-like; KEGG: smd:Smed_1365 rhodanese domain-containing protein; SMART: Rhodanese-like
YP_004548877.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1366 GCN5-related N-acetyltransferase
YP_004548878.1	PFAM: Protein of unknown function DUF1203; KEGG: smd:Smed_1367 hypothetical protein
YP_004548879.1	TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: smd:Smed_1368 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal
YP_004548880.1	KEGG: smd:Smed_1369 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator AsnC-type
YP_004548881.1	KEGG: rhi:NGR_c14900 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase
YP_004548882.1	PFAM: Transcription activator HlyU; KEGG: smd:Smed_1372 hypothetical protein
YP_004548883.1	KEGG: smd:Smed_1373 threonine dehydratase; TIGRFAM: Threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal
YP_004548884.1	PFAM: Cation transporter; KEGG: smd:Smed_1374 cation transporter
YP_004548885.1	KEGG: smd:Smed_1375 hypothetical protein
YP_004548886.1	PFAM: YCII-related; KEGG: smd:Smed_1379 DGPFAETKE family protein
YP_004548887.1	KEGG: smd:Smed_1380 hypothetical protein
YP_004548888.1	KEGG: smd:Smed_1381 hypothetical protein
YP_004548889.1	KEGG: smd:Smed_1382 hypothetical protein
YP_004548890.1	KEGG: smd:Smed_1383 hypothetical protein
YP_004548891.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein WrbA; KEGG: smd:Smed_1384 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_004548892.1	KEGG: smd:Smed_1385 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding
YP_004548893.1	HAMAP: Xanthine phosphoribosyltransferase; KEGG: smd:Smed_1386 xanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004548894.1	KEGG: smd:Smed_1387 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related
YP_004548895.1	KEGG: rhi:NGR_c14750 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_004548896.1	KEGG: smd:Smed_1389 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004548897.1	KEGG: smd:Smed_1390 hemimethylated DNA binding protein; TIGRFAM: Hemimethylated DNA-binding domain; PFAM: Hemimethylated DNA-binding domain
YP_004548898.1	PFAM: Invasion associated locus B; KEGG: smd:Smed_1396 invasion associated locus B family protein
YP_004548899.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_1397 extracellular solute-binding protein
YP_004548900.1	PFAM: DSBA-like thioredoxin domain; KEGG: smd:Smed_1398 DsbA oxidoreductase
YP_004548901.1	KEGG: pfl:PFL_0323 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004548902.1	PFAM: Sulfatase; KEGG: req:REQ_11530 sulfatase
YP_004548903.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: rhi:NGR_b05050 hypothetical protein
YP_004548904.1	KEGG: atu:Atu8099 hypothetical protein
YP_004548905.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: atu:Atu5048 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase
YP_004548906.1	KEGG: smd:Smed_4884 hypothetical protein
YP_004548907.1	KEGG: rlt:Rleg2_0802 hypothetical protein
YP_004548908.1	TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: smd:Smed_1399 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004548909.1	PFAM: Protein of unknown function DUF339; KEGG: smd:Smed_1400 hypothetical protein
YP_004548910.1	TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: smd:Smed_1401 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004548911.1	PFAM: Protein of unknown function DUF502; KEGG: smd:Smed_1402 hypothetical protein
YP_004548912.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1403 GCN5-related N-acetyltransferase
YP_004548913.1	TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: smd:Smed_1404 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II
YP_004548914.1	PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: smd:Smed_1405 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
YP_004548915.1	KEGG: smd:Smed_1406 sodium-dependent inorganic phosphate (Pi) transporter; TIGRFAM: Na/Pi-cotransporter; PFAM: Na/Pi-cotransporter; PhoU
YP_004548916.1	KEGG: smd:Smed_1407 putative peptidyl-prolyl cis-trans isomerase protein
YP_004548917.1	PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: smd:Smed_1408 anthranilate phosphoribosyltransferase
YP_004548918.1	KEGG: smd:Smed_1409 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_004548919.1	KEGG: smd:Smed_1410 molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain
YP_004548920.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; KEGG: smd:Smed_1411 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding
YP_004548921.1	KEGG: smd:Smed_1412 hypothetical protein
YP_004548922.1	KEGG: smd:Smed_1413 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core
YP_004548923.1	KEGG: smd:Smed_1414 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004548924.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_1415 basic membrane lipoprotein
YP_004548925.1	PFAM: ABC transporter permease; KEGG: smd:Smed_1416 inner-membrane translocator
YP_004548926.1	PFAM: ABC transporter permease; KEGG: smd:Smed_1417 inner-membrane translocator
YP_004548927.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1418 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004548928.1	KEGG: smd:Smed_1419 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004548929.1	KEGG: smd:Smed_1420 phosphatidylcholine synthase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004548930.1	KEGG: smd:Smed_1421 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase
YP_004548931.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_1422 auxin efflux carrier
YP_004548932.1	PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: smd:Smed_1423 cytochrome c biogenesis protein transmembrane region
YP_004548934.1	KEGG: smd:Smed_1445 hypothetical protein
YP_004548935.1	manually curated; KEGG: smd:Smed_2877 putative transmembrane protein
YP_004548937.1	KEGG: smd:Smed_1425 hypothetical protein
YP_004548938.1	KEGG: smd:Smed_4773 hypothetical protein
YP_004548939.1	KEGG: smd:Smed_1429 putative signal peptide protein
YP_004548940.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_1430 hypothetical protein
YP_004548941.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_1431 hypothetical protein
YP_004548942.1	KEGG: smd:Smed_1432 hypothetical protein
YP_004548943.1	KEGG: smd:Smed_1433 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004548944.1	PFAM: Porin, alpha proteobacteria type; KEGG: smd:Smed_1434 porin
YP_004548945.1	KEGG: smd:Smed_1435 putative signal peptide protein
YP_004548946.1	KEGG: smd:Smed_1436 hypothetical protein
YP_004548947.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_1437 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004548948.1	KEGG: smd:Smed_1438 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004548949.1	KEGG: smd:Smed_1439 acetyl-CoA acetyltransferase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; Thiolase, C-terminal
YP_004548950.1	KEGG: smd:Smed_1440 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004548951.1	KEGG: smd:Smed_1441 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004548952.1	KEGG: smd:Smed_1442 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004548953.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1443 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004548954.1	KEGG: mrd:Mrad2831_3001 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004548955.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: ppf:Pput_5275 transketolase, central region; SMART: Transketolase-like, pyrimidine-binding domain
YP_004548956.1	KEGG: mlo:mll5765 transketolase; PFAM: Transketolase, N-terminal
YP_004548957.1	KEGG: lch:Lcho_0405 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004548958.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dac:Daci_0730 tripartite ATP-independent periplasmic transporter DctQ
YP_004548959.1	KEGG: lch:Lcho_4273 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004548960.1	KEGG: mno:Mnod_4384 6-phosphogluconate dehydrogenase NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004548961.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mlo:mlr5771 transcriptional regulatory protein
YP_004548962.1	KEGG: xfn:XfasM23_1995 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004548963.1	KEGG: ret:RHE_PE00221 hypothetical protein; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004548964.1	KEGG: ret:RHE_PE00222 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004548965.1	KEGG: pmy:Pmen_4404 choline-glycine betaine transporter-like protein
YP_004548966.1	KEGG: smd:Smed_4461 putative signal peptide protein
YP_004548967.1	PFAM: Protein of unknown function DUF924; KEGG: bbr:BB2250 hypothetical protein
YP_004548968.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rlg:Rleg_2547 transcriptional regulator, LysR family
YP_004548969.1	KEGG: smd:Smed_5213 hypothetical protein
YP_004548971.1	KEGG: rhi:NGR_c05540 hypothetical protein
YP_004548972.1	PFAM: NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial; KEGG: smd:Smed_1447 ETC complex I subunit region
YP_004548973.1	PFAM: Protein of unknown function DUF192; KEGG: smd:Smed_1448 hypothetical protein
YP_004548974.1	KEGG: smd:Smed_1449 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004548975.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_1450 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004548976.1	KEGG: smd:Smed_1452 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1
YP_004548977.1	PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: smd:Smed_1453 homoserine dehydrogenase
YP_004548978.1	KEGG: smd:Smed_1454 aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004548979.1	KEGG: smd:Smed_1455 hypothetical protein
YP_004548980.1	KEGG: smd:Smed_1456 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1
YP_004548981.1	TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: smd:Smed_1457 sugar fermentation stimulation protein A; PFAM: Sugar fermentation stimulation protein
YP_004548982.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: smd:Smed_1458 methionine aminopeptidase; PFAM: Peptidase M24, structural domain
YP_004548983.1	KEGG: smd:Smed_1459 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758
YP_004548984.1	KEGG: smd:Smed_1462 soluble pyridine nucleotide transhydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004548985.1	KEGG: smd:Smed_1463 FeS assembly scaffold SufA; TIGRFAM: SUF system FeS cluster assembly, SufA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004548986.1	KEGG: smd:Smed_1464 FeS assembly SUF system protein; TIGRFAM: SUF system FeS cluster assembly associated; PFAM: Domain of unknown function DUF59
YP_004548987.1	TIGRFAM: Cysteine desulfurase, SufS; KEGG: smd:Smed_1465 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004548988.1	KEGG: smd:Smed_1466 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD
YP_004548989.1	TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: smd:Smed_1467 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core
YP_004548990.1	KEGG: smd:Smed_1468 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD
YP_004548991.1	KEGG: smd:Smed_1469 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004548992.1	KEGG: smd:Smed_1470 hypothetical protein
YP_004548993.1	KEGG: smd:Smed_1472 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase
YP_004548994.1	PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; KEGG: smd:Smed_1473 tyrosyl-tRNA synthetase
YP_004548995.1	KEGG: smd:Smed_1474 hypothetical protein
YP_004548996.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_1475 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004548997.1	PFAM: Protein of unknown function DUF455; KEGG: smd:Smed_1476 hypothetical protein
YP_004548998.1	PFAM: Peptidase M23; KEGG: smd:Smed_1477 peptidase M23B
YP_004548999.1	KEGG: smd:Smed_1478 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004549000.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_1479 NUDIX hydrolase
YP_004549001.1	PFAM: TfoX, N-terminal; KEGG: smd:Smed_1480 TfoX domain-containing protein
YP_004549002.1	KEGG: smd:Smed_1481 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Molybdopterin binding; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SMART: Molybdopterin binding
YP_004549003.1	KEGG: smd:Smed_1482 xanthine dehydrogenase accessory factor
YP_004549004.1	PFAM: XdhC- CoxI; KEGG: smd:Smed_1483 hypothetical protein
YP_004549005.1	PFAM: vWA containing CoxE-like; KEGG: smd:Smed_1484 VWA containing CoxE family protein
YP_004549006.1	PFAM: ATPase, AAA-5; KEGG: smd:Smed_1485 ATPase
YP_004549007.1	KEGG: smd:Smed_1486 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004549008.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_1487 extracellular ligand-binding receptor
YP_004549009.1	PFAM: Peptidase S58, DmpA; KEGG: smd:Smed_1488 peptidase S58 DmpA
YP_004549010.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: smd:Smed_1489 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_004549011.1	PFAM: Protein of unknown function DUF2259, secreted; KEGG: smd:Smed_1490 hypothetical protein
YP_004549012.1	KEGG: smd:Smed_1491 hypothetical protein
YP_004549013.1	KEGG: rhi:NGR_c15170 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi
YP_004549014.1	PFAM: Type IV pilus assembly PilZ; KEGG: smd:Smed_1493 type IV pilus assembly PilZ
YP_004549015.1	PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: smd:Smed_1494 hypothetical protein
YP_004549016.1	PFAM: Protein of unknown function DUF1234; KEGG: smd:Smed_1495 hypothetical protein
YP_004549017.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bsb:Bresu_2118 transcriptional regulator, LysR family
YP_004549018.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: bpt:Bpet3606 hypothetical protein
YP_004549019.1	KEGG: ara:Arad_2915 hypothetical protein; TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
YP_004549020.1	PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mes:Meso_1079 6-phosphogluconate dehydrogenase, NAD-binding
YP_004549021.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: aco:Amico_0145 protein of unknown function DUF112 transmembrane
YP_004549022.1	KEGG: ipo:Ilyop_2142 hypothetical protein
YP_004549023.1	KEGG: rsk:RSKD131_4238 tricarboxylic transport membrane protein
YP_004549024.1	PFAM: PrpF protein; KEGG: bsb:Bresu_2120 protein of unknown function DUF453
YP_004549025.1	PFAM: Protein of unknown function DUF1476; KEGG: smd:Smed_1497 hypothetical protein
YP_004549026.1	PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: rhi:NGR_c16190 phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004549027.1	KEGG: rhi:NGR_c16200 phosphoribosylformylglycinamidine synthase subunit PurS; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit
YP_004549028.1	PFAM: CobB/CobQ-like glutamine amidotransferase; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; HAMAP: Phosphoribosylformylglycinamidine synthase I; KEGG: smd:Smed_1500 phosphoribosylformylglycinamidine synthase I
YP_004549029.1	KEGG: smd:Smed_1501 hypothetical protein
YP_004549030.1	manually curated; KEGG: smd:Smed_1502 hypothetical protein
YP_004549031.1	KEGG: smd:Smed_1503 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004549032.1	PFAM: Lipid A 3-O-deacylase-related; KEGG: smd:Smed_1504 hypothetical protein
YP_004549033.1	PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; HAMAP: Phosphoribosylformylglycinamidine synthase II; KEGG: smd:Smed_1505 phosphoribosylformylglycinamidine synthase II
YP_004549034.1	PFAM: BolA protein; KEGG: smd:Smed_1506 BolA family protein
YP_004549035.1	KEGG: rhi:NGR_c16280 hypothetical protein
YP_004549036.1	KEGG: smd:Smed_1508 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin
YP_004549037.1	KEGG: smd:Smed_1509 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004549038.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1510 major facilitator transporter
YP_004549039.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_1511 inositol monophosphatase
YP_004549040.1	KEGG: smd:Smed_1512 C32 tRNA thiolase; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase
YP_004549041.1	TIGRFAM: Glutaminase; KEGG: smd:Smed_1513 glutaminase; PFAM: Glutaminase
YP_004549042.1	TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: RNA-binding S4; Ribosomal protein S4/S9, N-terminal; KEGG: smd:Smed_1514 30S ribosomal protein S4; SMART: RNA-binding S4
YP_004549043.1	SMART: ATPase, AAA+ type, core; KEGG: smd:Smed_1515 AAA ATPase
YP_004549044.1	PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: smd:Smed_1516 glutamate racemase
YP_004549045.1	KEGG: smd:Smed_1517 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU
YP_004549046.1	TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; KEGG: smd:Smed_1519 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004549047.1	KEGG: mlo:mll6710 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004549048.1	KEGG: pct:PC1_3491 hypothetical protein; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SMART: Cell wall assembly/cell proliferation coordinating protein, KNR4-like
YP_004549049.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: bpy:Bphyt_6665 protein of unknown function DUF1214
YP_004549050.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: vpa:VPA0735 hypothetical protein
YP_004549051.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: rhi:NGR_c16450 sulfate transporter family protein
YP_004549052.1	TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: smd:Smed_1521 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004549053.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: smd:Smed_1522 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA
YP_004549054.1	PFAM: Carbohydrate/purine kinase; KEGG: rhi:NGR_c16480 possible sugar kinase, ribokinase family
YP_004549055.1	KEGG: smd:Smed_1524 indigoidine synthase A family protein; HAMAP: Pseudouridine-5'-phosphate glycosidase; PFAM: Pseudouridine-5'-phosphate glycosidase
YP_004549056.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_1525 multi-sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004549057.1	KEGG: smd:Smed_1526 putative CheA signal transduction histidine kinase
YP_004549058.1	TIGRFAM: RNA polymerase-binding, DksA; KEGG: smd:Smed_1527 TraR/DksA family transcriptional regulator
YP_004549059.1	KEGG: smd:Smed_1528 putative phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004549060.1	PFAM: Protein of unknown function DUF463, YcjX-like protein; KEGG: smd:Smed_1529 protein of unknown function DUF463 YcjX family protein
YP_004549061.1	TIGRFAM: Uncharacterised protein family UPF0283; HAMAP: Uncharacterised protein family UPF0283; KEGG: smd:Smed_1530 hypothetical protein; PFAM: Protein of unknown function DUF697
YP_004549062.1	KEGG: smd:Smed_1531 putative signal peptide protein
YP_004549063.1	TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: smd:Smed_1532 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_004549064.1	TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: smd:Smed_1533 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase
YP_004549065.1	TIGRFAM: Dihydropteroate synthase; KEGG: smd:Smed_1534 dihydropteroate synthase; PFAM: Pterin-binding
YP_004549066.1	PFAM: Protein of unknown function DUF922; KEGG: smd:Smed_1535 hypothetical protein
YP_004549068.1	PFAM: Ferredoxin; KEGG: smd:Smed_1536 ferredoxin
YP_004549069.1	PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: smd:Smed_1537 Hpt domain-containing protein
YP_004549070.1	KEGG: smd:Smed_1538 chemotaxis sensory transducer
YP_004549071.1	PFAM: Cytochrome c1; KEGG: smd:Smed_1539 cytochrome c1
YP_004549072.1	PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: smd:Smed_1540 cytochrome b/b6 domain-containing protein
YP_004549073.1	TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; KEGG: smd:Smed_1541 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain
YP_004549074.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1542 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549075.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1543 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549076.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: rhi:NGR_c16760 putative aminotransferase/methyltransferase
YP_004549077.1	PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_1545 NADPH-dependent FMN reductase
YP_004549078.1	TIGRFAM: Redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: smd:Smed_1546 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_004549079.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1547 major facilitator transporter
YP_004549080.1	KEGG: smd:Smed_1548 hypothetical protein
YP_004549081.1	HAMAP: Coproporphyrinogen III oxidase; KEGG: rhi:NGR_c16790 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase
YP_004549082.1	PFAM: Transport-associated; KEGG: smd:Smed_1550 transport-associated
YP_004549083.1	TIGRFAM: Addiction module antidote protein, HI1420; KEGG: rru:Rru_A0456 transcriptional regulator
YP_004549084.1	PFAM: Protein of unknown function DUF330; KEGG: smd:Smed_1551 hypothetical protein
YP_004549085.1	PFAM: Mammalian cell entry-related; KEGG: smd:Smed_1552 hypothetical protein
YP_004549086.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1553 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549087.1	PFAM: Domain of unknown function DUF140; KEGG: smd:Smed_1554 hypothetical protein
YP_004549088.1	KEGG: smd:Smed_1555 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004549089.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_1556 major facilitator transporter
YP_004549090.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_1557 metallophosphoesterase
YP_004549091.1	KEGG: smd:Smed_1558 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding
YP_004549092.1	KEGG: smd:Smed_1559 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; Transcription factor LuxR-like, autoinducer-binding domain; SMART: Transcription regulator LuxR, C-terminal
YP_004549093.1	KEGG: smd:Smed_1560 autoinducer synthesis protein; PFAM: Autoinducer synthesis protein
YP_004549094.1	KEGG: smd:Smed_1561 putative signal peptide protein
YP_004549095.1	TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; KEGG: smd:Smed_1562 cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like
YP_004549096.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_1563 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004549097.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL4238 hypothetical protein
YP_004549098.1	KEGG: rlg:Rleg_3771 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004549099.1	KEGG: rhi:NGR_c16940 putative TolB-like protein
YP_004549100.1	KEGG: smd:Smed_1566 NAD synthetase; TIGRFAM: NAD synthase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004549101.1	PFAM: Sulfatase; KEGG: smd:Smed_1567 sulfatase
YP_004549102.1	PFAM: TadE-like; KEGG: atu:Atu1608 hypothetical protein
YP_004549103.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: atu:Atu1609 hypothetical protein
YP_004549104.1	KEGG: smd:Smed_1568 hypothetical protein
YP_004549105.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1569 glutathione-dependent formaldehyde-activating GFA
YP_004549106.1	TIGRFAM: DAHP synthetase, class II; KEGG: smd:Smed_1570 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II
YP_004549107.1	TIGRFAM: Glutathione-disulphide reductase; KEGG: smd:Smed_1571 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004549108.1	PFAM: Protein of unknown function DUF2059; KEGG: smd:Smed_1572 hypothetical protein
YP_004549109.1	PFAM: Ribose 5-phosphate isomerase, type A; HTH transcriptional regulator, DeoR; TIGRFAM: Ribose 5-phosphate isomerase, type A; HAMAP: Ribose-5-phosphate isomerase, type A, subgroup; KEGG: smd:Smed_1573 ribose-5-phosphate isomerase A
YP_004549110.1	TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: smd:Smed_1574 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase
YP_004549111.1	PFAM: YkuD domain; KEGG: smd:Smed_1575 hypothetical protein
YP_004549112.1	TIGRFAM: Fumarate hydratase, class II; KEGG: smd:Smed_1576 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal
YP_004549113.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_1577 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004549114.1	KEGG: smd:Smed_1578 hypothetical protein
YP_004549115.1	KEGG: smd:Smed_1579 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004549116.1	PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: rhi:NGR_c17100 hypothetical protein
YP_004549117.1	TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: rhi:NGR_c17110 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB
YP_004549118.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_1583 hypothetical protein
YP_004549119.1	KEGG: smd:Smed_1584 molybdopterin-guanine dinucleotide biosynthesis protein MobA; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A
YP_004549120.1	TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: smd:Smed_1585 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_004549121.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: rhi:NGR_c17170 OmpA family protein
YP_004549122.1	KEGG: smd:Smed_1588 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor
YP_004549123.1	KEGG: smd:Smed_1589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004549124.1	KEGG: smd:Smed_1590 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004549125.1	PFAM: Usg-like; KEGG: smd:Smed_1591 Usg family protein
YP_004549126.1	KEGG: smd:Smed_1592 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549127.1	PFAM: Uncharacterised conserved protein UCP01500; KEGG: smd:Smed_1593 hypothetical protein
YP_004549128.1	KEGG: smd:Smed_1594 methyltransferase type 12; PFAM: Methyltransferase type 12; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat
YP_004549129.1	KEGG: smd:Smed_1595 6-phosphogluconate dehydrogenase NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004549130.1	KEGG: smd:Smed_1596 hypothetical protein
YP_004549131.1	KEGG: smd:Smed_1597 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004549132.1	PFAM: Uracil-DNA glycosylase-like; KEGG: smd:Smed_1598 uracil-DNA glycosylase superfamily protein
YP_004549133.1	KEGG: rhi:NGR_c17290 putative exopolysaccharide biosynthesis protein; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_004549134.1	KEGG: smd:Smed_1600 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004549135.1	KEGG: rhi:NGR_c17320 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic
YP_004549136.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: smd:Smed_1603 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_004549137.1	KEGG: smd:Smed_1604 cobalamin synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase
YP_004549138.1	PFAM: Protein of unknown function DUF1289; KEGG: smd:Smed_1605 hypothetical protein
YP_004549139.1	KEGG: smd:Smed_1606 putative transmembrane signal peptide protein
YP_004549140.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_1607 ABC-2 type transporter
YP_004549141.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1608 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549142.1	KEGG: smd:Smed_1609 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004549143.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gpb:HDN1F_31380 GCN5-related N-acetyltransferase
YP_004549144.1	PFAM: Protein of unknown function DUF1778; KEGG: pmr:PMI1092 hypothetical protein
YP_004549145.1	KEGG: atu:Atu3987 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding
YP_004549146.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: rru:Rru_A0460 NADP oxidoreductase, coenzyme F420-dependent
YP_004549147.1	PFAM: Extensin-like, C-terminal; KEGG: smd:Smed_1611 extensin family protein
YP_004549148.1	manually curated; PFAM: Protease inhibitor, Kazal-type; KEGG: smd:Smed_1612 protease inhibitor Kazal-type; SMART: Proteinase inhibitor I1, Kazal
YP_004549149.1	KEGG: smd:Smed_1613 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004549150.1	PFAM: Thioesterase superfamily; KEGG: rhi:NGR_c17470 predicted acyl-CoA hydrolase protein
YP_004549151.1	KEGG: smd:Smed_1615 hypothetical protein
YP_004549152.1	PFAM: Protein of unknown function DUF486; KEGG: smd:Smed_1616 hypothetical protein
YP_004549153.1	SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: smd:Smed_1617 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein
YP_004549154.1	KEGG: smd:Smed_1618 glycine rich transmembrane protein
YP_004549155.1	KEGG: smd:Smed_1619 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004549156.1	KEGG: smd:Smed_1620 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004549157.1	PFAM: tRNA-dihydrouridine synthase; KEGG: smd:Smed_1621 tRNA-dihydrouridine synthase A
YP_004549158.1	PFAM: Integrase, catalytic core, phage; KEGG: smd:Smed_1622 phage integrase family protein
YP_004549159.1	PFAM: Thioredoxin domain; KEGG: smd:Smed_1632 thioredoxin domain-containing protein
YP_004549160.1	KEGG: smd:Smed_0015 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54
YP_004549161.1	KEGG: ngr:NAEGRDRAFT_51031 hypothetical protein
YP_004549162.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004549163.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_1864 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004549164.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_6347 hypothetical protein
YP_004549165.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004549167.1	KEGG: smd:Smed_1634 hypothetical protein
YP_004549168.1	KEGG: smd:Smed_6068 hypothetical protein
YP_004549169.1	KEGG: smd:Smed_1636 putative transmembrane protein
YP_004549170.1	KEGG: smd:Smed_1870 hypothetical protein
YP_004549171.1	KEGG: smd:Smed_1871 hypothetical protein
YP_004549172.1	KEGG: smd:Smed_1639 hypothetical protein
YP_004549173.1	KEGG: smd:Smed_1873 hypothetical protein
YP_004549174.1	PFAM: Domain of unknown function DUF1983; KEGG: smd:Smed_1641 hypothetical protein
YP_004549175.1	KEGG: smd:Smed_1642 hypothetical protein
YP_004549176.1	KEGG: smd:Smed_1644 hypothetical protein
YP_004549177.1	KEGG: smd:Smed_1645 hypothetical protein
YP_004549178.1	PFAM: Phage tail tape measure protein TP901, core region; KEGG: smd:Smed_1646 hypothetical protein
YP_004549179.1	KEGG: oan:Oant_3381 polysaccharide biosynthesis protein
YP_004549180.1	KEGG: smd:Smed_1648 hypothetical protein
YP_004549181.1	KEGG: smd:Smed_1649 phage major tail protein, TP901-1
YP_004549182.1	KEGG: smd:Smed_1650 hypothetical protein
YP_004549183.1	KEGG: smd:Smed_1651 hypothetical protein
YP_004549184.1	KEGG: smd:Smed_1652 hypothetical protein
YP_004549185.1	KEGG: smd:Smed_1653 hypothetical protein
YP_004549186.1	PFAM: Phage major capsid protein E; KEGG: smd:Smed_1654 phage major capsid protein E
YP_004549187.1	KEGG: smd:Smed_1655 hypothetical protein
YP_004549188.1	KEGG: smd:Smed_1656 hypothetical protein
YP_004549189.1	PFAM: Peptidase S49; KEGG: smd:Smed_1657 peptidase S49
YP_004549190.1	KEGG: smd:Smed_1658 lambda family phage portal protein; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda
YP_004549191.1	PFAM: Head-to-tail joining protein W, gpW; KEGG: smd:Smed_1659 hypothetical protein
YP_004549192.1	PFAM: Phage terminase GpA; KEGG: smd:Smed_1660 phage terminase GpA
YP_004549193.1	KEGG: smd:Smed_1661 hypothetical protein
YP_004549194.1	KEGG: smd:Smed_1662 hypothetical protein
YP_004549195.1	PFAM: Transcription antitermination protein, NusG, N-terminal; KEGG: smd:Smed_1663 NusG antitermination factor
YP_004549196.1	KEGG: smd:Smed_1664 hypothetical protein
YP_004549197.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_1665 hypothetical protein
YP_004549198.1	KEGG: smd:Smed_1666 hypothetical protein
YP_004549199.1	PFAM: MT-A70; KEGG: smd:Smed_1667 MT-A70 family protein
YP_004549200.1	KEGG: smd:Smed_1668 hypothetical protein
YP_004549201.1	KEGG: smd:Smed_1669 hypothetical protein
YP_004549202.1	KEGG: smd:Smed_1670 hypothetical protein
YP_004549203.1	KEGG: smd:Smed_1671 hypothetical protein
YP_004549204.1	manually curated; KEGG: smd:Smed_1672 hypothetical protein
YP_004549205.1	KEGG: rpt:Rpal_3044 putative phage repressor; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3
YP_004549206.1	KEGG: smd:Smed_1674 hypothetical protein
YP_004549207.1	KEGG: smd:Smed_1675 hypothetical protein
YP_004549208.1	KEGG: smd:Smed_1676 hypothetical protein
YP_004549209.1	KEGG: smd:Smed_1676 hypothetical protein
YP_004549210.1	KEGG: mno:Mnod_3592 hypothetical protein
YP_004549211.1	KEGG: smd:Smed_1677 hypothetical protein
YP_004549212.1	KEGG: smd:Smed_1678 hypothetical protein
YP_004549213.1	KEGG: smd:Smed_1679 hypothetical protein
YP_004549214.1	KEGG: smd:Smed_1680 hypothetical protein
YP_004549215.1	KEGG: rlt:Rleg2_5076 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004549216.1	PFAM: Negative transcriptional regulator; KEGG: rlt:Rleg2_5075 FMN-binding negative transcriptional regulator
YP_004549217.1	KEGG: mlo:mll6378 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain
YP_004549218.1	KEGG: smd:Smed_1688 putative glycine-rich cell wall structural transmembrane protein
YP_004549219.1	KEGG: smd:Smed_1689 hypothetical protein
YP_004549220.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_1690 hypothetical protein
YP_004549221.1	KEGG: smd:Smed_1691 hypothetical protein
YP_004549222.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_1692 fumarylacetoacetate (FAA) hydrolase
YP_004549223.1	KEGG: smd:Smed_1693 hexapaptide repeat-containing transferase
YP_004549224.1	PFAM: Ferric-uptake regulator; KEGG: rhi:NGR_c17620 zinc uptake transcriptional regulator protein, Fur family
YP_004549225.1	PFAM: ABC-3; KEGG: smd:Smed_1695 ABC-3 protein
YP_004549226.1	KEGG: rhi:NGR_c17640 ABC transporter, zinc containing nucleotide binding/ATPase protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004549227.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: smd:Smed_1697 periplasmic solute binding protein
YP_004549228.1	KEGG: smd:Smed_1709 putative transmembrane signal peptide protein
YP_004549229.1	KEGG: smd:Smed_1710 alpha-N-arabinofuranosidase; PFAM: Glycoside hydrolase, family 43
YP_004549230.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1711 tripartite ATP-independent periplasmic transporter DctQ
YP_004549231.1	KEGG: smd:Smed_1712 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004549232.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_1719 TRAP dicarboxylate transporter-DctP subunit
YP_004549233.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_1721 aldo/keto reductase
YP_004549234.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_1722 oxidoreductase domain-containing protein
YP_004549235.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_1723 xylose isomerase domain-containing protein
YP_004549236.1	KEGG: smd:Smed_1724 beta-mannosidase; PFAM: Glycoside hydrolase, family 2, carbohydrate-binding
YP_004549237.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_1725 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549238.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1726 binding-protein-dependent transport systems inner membrane component
YP_004549239.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1727 binding-protein-dependent transport systems inner membrane component
YP_004549240.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_1728 extracellular solute-binding protein
YP_004549241.1	KEGG: smd:Smed_1730 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004549242.1	KEGG: smd:Smed_1731 hypothetical protein
YP_004549243.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: smd:Smed_1732 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding
YP_004549244.1	KEGG: smd:Smed_6060 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_004549245.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: smd:Smed_1733 helix-turn-helix domain-containing protein
YP_004549246.1	KEGG: smd:Smed_1734 hypothetical protein
YP_004549247.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_1735 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549248.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: smd:Smed_1736 lipid A biosynthesis lauroyl acyltransferase
YP_004549249.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_1737 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004549250.1	PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; KEGG: smd:Smed_1738 3-oxoacyl-(acyl carrier protein) synthase II; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_004549251.1	PFAM: Beta-ketoacyl synthase, N-terminal; KEGG: smd:Smed_1739 3-oxoacyl-(acyl carrier protein) synthase II
YP_004549252.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: smd:Smed_1740 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
YP_004549253.1	PFAM: Phosphopantetheine-binding; KEGG: smd:Smed_1741 acyl carrier protein
YP_004549254.1	TIGRFAM: Cobalamin biosynthesis CobD/CbiB; HAMAP: Cobalamin biosynthesis CobD/CbiB; KEGG: smd:Smed_1743 cobalamin biosynthesis protein; PFAM: Cobalamin biosynthesis CobD/CbiB
YP_004549255.1	KEGG: smd:Smed_1744 aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII
YP_004549256.1	KEGG: smd:Smed_1745 cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase
YP_004549257.1	TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: smd:Smed_1746 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase
YP_004549258.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: smd:Smed_1747 putative cobalamin biosynthesis protein
YP_004549259.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_1748 hypothetical protein
YP_004549260.1	KEGG: smd:Smed_1749 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_004549261.1	PFAM: Acetamidase/Formamidase; KEGG: smd:Smed_1750 acetamidase/formamidase
YP_004549262.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_1751 extracellular solute-binding protein
YP_004549263.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1752 binding-protein-dependent transport systems inner membrane component
YP_004549264.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1753 binding-protein-dependent transport systems inner membrane component
YP_004549265.1	PFAM: ANTAR; KEGG: smd:Smed_1754 response regulator receiver/ANTAR domain-containing protein
YP_004549266.1	KEGG: smd:Smed_1755 putative regulator protein
YP_004549267.1	KEGG: smd:Smed_1757 hypothetical protein
YP_004549268.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: smd:Smed_1758 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR
YP_004549269.1	TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: smd:Smed_1759 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase
YP_004549270.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: smd:Smed_1760 cobalamin biosynthesis protein CobW; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004549271.1	KEGG: smd:Smed_1761 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase
YP_004549272.1	PFAM: FecR protein; KEGG: smd:Smed_1762 hypothetical protein
YP_004549273.1	KEGG: smd:Smed_1763 putative CHASE2 sensor protein; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004549274.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1764 alpha/beta hydrolase fold
YP_004549275.1	TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: smd:Smed_1765 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase
YP_004549276.1	KEGG: smd:Smed_1766 hypothetical protein
YP_004549277.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_1767 substrate-binding region of ABC-type glycine betaine transport system
YP_004549278.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: smd:Smed_1768 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like
YP_004549279.1	KEGG: rce:RC1_0082 transcriptional regulators (CopG/Arc/MetJ DNA-binding domain), putative; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_004549280.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: smd:Smed_1769 4-oxalocrotonate tautomerase
YP_004549281.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1770 LysR family transcriptional regulator
YP_004549282.1	KEGG: smd:Smed_1771 methionine synthase I; PFAM: Homocysteine S-methyltransferase
YP_004549283.1	KEGG: dat:HRM2_38890 AspC4; PFAM: Aminotransferase, class I/classII
YP_004549284.1	PFAM: YheO-like; KEGG: nml:Namu_0520 YheO domain protein
YP_004549285.1	PFAM: Phosphodiester alpha-GlcNAcase; KEGG: smd:Smed_1773 lipoprotein signal peptide
YP_004549286.1	KEGG: smd:Smed_1774 hypothetical protein
YP_004549287.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_1775 trimethylamine methyltransferase
YP_004549288.1	KEGG: smd:Smed_1776 methionine synthase; PFAM: Cobalamin (vitamin B12)-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap
YP_004549289.1	KEGG: smd:Smed_1777 hypothetical protein
YP_004549290.1	PFAM: Formyl transferase, N-terminal; KEGG: rhi:NGR_c18410 formyl transferase domain protein
YP_004549291.1	PFAM: Entericidin EcnAB; KEGG: smd:Smed_1778 entericidin EcnAB
YP_004549292.1	KEGG: smd:Smed_1779 lipoprotein transmembrane
YP_004549293.1	PFAM: BA14K-like; KEGG: smd:Smed_1780 BA14K family protein
YP_004549294.1	KEGG: rhi:NGR_c18440 hypothetical protein
YP_004549295.1	KEGG: smd:Smed_1782 hypothetical protein
YP_004549296.1	PFAM: Methylenetetrahydrofolate reductase; KEGG: smd:Smed_1783 methylenetetrahydrofolate reductase
YP_004549297.1	KEGG: smd:Smed_1784 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; PFAM: Pterin-binding
YP_004549298.1	KEGG: smd:Smed_1785 hypothetical protein
YP_004549299.1	PFAM: Ferredoxin; KEGG: smd:Smed_1786 ferredoxin
YP_004549300.1	PFAM: Chloramphenicol phosphotransferase-like; KEGG: smd:Smed_1787 chloramphenicol phosphotransferase family protein
YP_004549301.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rhi:NGR_c18550 hypothetical protein
YP_004549302.1	KEGG: fri:FraEuI1c_3042 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004549303.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_1788 LysR family transcriptional regulator
YP_004549304.1	KEGG: rhi:NGR_c18570 hypothetical protein
YP_004549305.1	KEGG: smd:Smed_1789 hypothetical protein
YP_004549306.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_1790 alpha/beta hydrolase fold
YP_004549307.1	KEGG: smd:Smed_1791 hypothetical protein
YP_004549308.1	KEGG: smd:Smed_1792 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004549309.1	KEGG: smd:Smed_1793 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF156
YP_004549310.1	KEGG: smd:Smed_1794 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004549311.1	KEGG: rhi:NGR_c18610 putative two component response regulator transcriptional regulatory protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004549312.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_1796 hemolysin-type calcium-binding region
YP_004549313.1	KEGG: rhi:NGR_c18620 putative guanylate/adenylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004549314.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: smd:Smed_1797 deaminase-reductase domain-containing protein
YP_004549315.1	KEGG: rhi:NGR_c18660 hypothetical protein
YP_004549316.1	KEGG: smd:Smed_1799 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC
YP_004549317.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_1800 MscS mechanosensitive ion channel
YP_004549318.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1801 glutathione-dependent formaldehyde-activating GFA
YP_004549319.1	PFAM: Protein of unknown function DUF924; KEGG: smd:Smed_1802 hypothetical protein
YP_004549320.1	PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: smd:Smed_1803 TrkA domain-containing protein
YP_004549321.1	KEGG: smd:Smed_1804 putative transmembrane protein
YP_004549322.1	KEGG: smd:Smed_1805 putative transmembrane protein
YP_004549323.1	PFAM: Protein of unknown function DUF1515; KEGG: smd:Smed_1806 hypothetical protein
YP_004549324.1	KEGG: smd:Smed_1807 hypothetical protein
YP_004549325.1	KEGG: smd:Smed_1808 putative transmembrane protein
YP_004549326.1	PFAM: Glycosyl transferase, family 2; KEGG: rhi:NGR_c18850 hypothetical protein
YP_004549327.1	KEGG: rhi:NGR_c18860 hypothetical protein
YP_004549328.1	KEGG: smd:Smed_1839 hypothetical protein
YP_004549329.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_1840 glutathione-dependent formaldehyde-activating GFA
YP_004549330.1	KEGG: smd:Smed_1841 hypothetical protein
YP_004549331.1	KEGG: smd:Smed_1842 putative signal peptide protein
YP_004549332.1	KEGG: smd:Smed_1843 hypothetical protein
YP_004549333.1	KEGG: smd:Smed_1844 hypothetical protein
YP_004549334.1	KEGG: rhi:NGR_c19100 hypothetical protein
YP_004549335.1	KEGG: smd:Smed_1849 putative transmembrane protein
YP_004549336.1	KEGG: rhi:NGR_c19120 hypothetical protein
YP_004549337.1	KEGG: smd:Smed_1851 BA14K family protein; manually curated; PFAM: BA14K-like
YP_004549338.1	KEGG: smd:Smed_1852 hypothetical protein
YP_004549339.1	KEGG: smd:Smed_1853 chromosomal replication initiator DnaA domain-containing protein; PFAM: Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal
YP_004549340.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: smd:Smed_1854 putative phage repressor
YP_004549341.1	KEGG: smd:Smed_1855 hypothetical protein
YP_004549342.1	KEGG: smd:Smed_1856 putative signal peptide protein
YP_004549343.1	PFAM: Pentapeptide repeat; KEGG: smd:Smed_1857 pentapeptide repeat-containing protein
YP_004549344.1	KEGG: smd:Smed_1858 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45
YP_004549345.1	KEGG: pfl:PFL_3610 RNA polymerase sigma-70 family protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004549346.1	PFAM: FecR protein; KEGG: atu:Atu3386 two component sensor kinase
YP_004549347.1	TIGRFAM: TonB-dependent haem/haemoglobin receptor; TonB-dependent haemoglobin/transferrin/lactoferrin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: atu:Atu3385 heme receptor; SMART: Secretin/TonB, short N-terminal
YP_004549348.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: atu:Atu3383 rhizobicin secretion; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004549349.1	KEGG: atu:Atu3382 HlyD family secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004549350.1	KEGG: smd:Smed_1859 hypothetical protein
YP_004549351.1	KEGG: rhi:NGR_c19240 hypothetical protein
YP_004549352.1	KEGG: mlo:msr2149 hypothetical protein; manually curated; PFAM: Uncharacterised protein family UPF0395
YP_004549353.1	PFAM: Uncharacterised protein family UPF0150; CopG-like DNA-binding; KEGG: mlo:mlr2150 hypothetical protein
YP_004549354.1	KEGG: smd:Smed_1932 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004549355.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_1933 NUDIX hydrolase
YP_004549356.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_1934 endonuclease/exonuclease/phosphatase
YP_004549357.1	TIGRFAM: Conserved hypothetical protein CHP02594; KEGG: smd:Smed_1935 putative signal peptide protein
YP_004549358.1	KEGG: rhi:NGR_b02140 hypothetical protein
YP_004549359.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: smd:Smed_1939 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004549360.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_1940 tripartite ATP-independent periplasmic transporter DctQ
YP_004549361.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_1941 TRAP dicarboxylate transporter-DctP subunit
YP_004549362.1	PFAM: NHL repeat; KEGG: rhi:NGR_c19450 L-sorbosone dehydrogenase
YP_004549363.1	KEGG: smd:Smed_1942 TPR repeat-containing protein
YP_004549364.1	TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: smd:Smed_1943 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_004549365.1	KEGG: smd:Smed_1944 hypothetical protein
YP_004549366.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3; KEGG: rhi:NGR_c19510 putative phosphoglycolate phosphatase; SMART: ATPase, AAA+ type, core
YP_004549367.1	PFAM: ABC transporter-like; KEGG: smd:Smed_1946 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549368.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_1947 binding-protein-dependent transport systems inner membrane component
YP_004549369.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_1948 extracellular solute-binding protein
YP_004549370.1	KEGG: smd:Smed_1949 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004549371.1	KEGG: smd:Smed_1950 hypothetical protein
YP_004549372.1	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: smd:Smed_1951 30S ribosomal protein S21; PFAM: Ribosomal protein S21
YP_004549373.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: smd:Smed_1953 glutathione S-transferase domain-containing protein
YP_004549374.1	KEGG: smd:Smed_1954 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004549375.1	PFAM: Aminotransferase, class I/classII; KEGG: smd:Smed_1955 GntR family transcriptional regulator
YP_004549377.1	manually curated; KEGG: smd:Smed_1957 hypothetical protein
YP_004549378.1	PFAM: YkuD domain; KEGG: smd:Smed_1958 ErfK/YbiS/YcfS/YnhG family protein
YP_004549379.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_1959 substrate-binding region of ABC-type glycine betaine transport system
YP_004549380.1	KEGG: smd:Smed_1960 putative adenylate/guanylate cyclase
YP_004549381.1	KEGG: smd:Smed_1961 putative signal peptide protein
YP_004549382.1	PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Acetohydroxy acid isomeroreductase; KEGG: smd:Smed_1962 ketol-acid reductoisomerase
YP_004549383.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_1963 TetR family transcriptional regulator
YP_004549384.1	KEGG: rhi:NGR_c19780 macrolide-specific efflux protein MacA precursor; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004549385.1	PFAM: ABC transporter-like; Domain of unknown function DUF214, ABC transporter permease; KEGG: rhi:NGR_c19790 macrolide export ATP-binding/permease protein MacB; SMART: ATPase, AAA+ type, core
YP_004549386.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_1964 transglutaminase family protein cysteine peptidase BTLCP
YP_004549387.1	KEGG: smd:Smed_1965 putative glycine-rich protein
YP_004549388.1	KEGG: smd:Smed_1966 putative transmembrane protein
YP_004549389.1	PFAM: Aminoglycoside phosphotransferase; KEGG: smd:Smed_1967 aminoglycoside phosphotransferase
YP_004549390.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: oan:Oant_1409 Asp/Glu racemase
YP_004549391.1	PFAM: Major facilitator superfamily MFS-1; KEGG: oan:Oant_1408 major facilitator transporter
YP_004549392.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: ara:Arad_7133 hypothetical protein
YP_004549393.1	KEGG: smd:Smed_1968 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004549394.1	KEGG: smd:Smed_1969 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004549395.1	KEGG: smd:Smed_1970 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_004549396.1	PFAM: Helix-turn-helix, HxlR type; KEGG: rhi:NGR_c19870 putative transcriptional regulator protein
YP_004549397.1	KEGG: smd:Smed_1972 NmrA family protein
YP_004549398.1	PFAM: Protein of unknown function DUF983; KEGG: smd:Smed_1973 hypothetical protein
YP_004549399.1	KEGG: smd:Smed_1974 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004549400.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: smd:Smed_1982 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ
YP_004549401.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_1983 protein of unknown function DUF899 thioredoxin family protein
YP_004549402.1	KEGG: smd:Smed_1984 hypothetical protein
YP_004549403.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_1985 17 kDa surface antigen
YP_004549404.1	KEGG: smd:Smed_1986 putative signal peptide protein
YP_004549405.1	KEGG: smd:Smed_1987 hypothetical protein
YP_004549406.1	KEGG: smd:Smed_1988 hypothetical protein
YP_004549407.1	PFAM: TfuA-like, core; KEGG: smd:Smed_1989 TfuA domain-containing protein
YP_004549408.1	KEGG: smd:Smed_1990 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like
YP_004549409.1	KEGG: smd:Smed_1991 adenylyl cyclase class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; ATPase domain, prokaryote; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004549410.1	KEGG: smd:Smed_1993 putative suppressor
YP_004549411.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004549412.1	KEGG: smd:Smed_1994 exodeoxyribonuclease V
YP_004549413.1	KEGG: smd:Smed_1995 putative ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase
YP_004549414.1	KEGG: pla:Plav_2046 hypothetical protein
YP_004549415.1	KEGG: gme:Gmet_2969 hypothetical protein
YP_004549416.1	KEGG: rhi:NGR_c20070 conserved hypothetical secreted protein
YP_004549417.1	KEGG: smd:Smed_1997 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004549418.1	KEGG: smd:Smed_1998 putative transmembrane anti-sigma factor
YP_004549419.1	KEGG: rhi:NGR_c20100 hypothetical protein
YP_004549420.1	KEGG: rhi:NGR_c20110 putative low-molecular weight cobalt-containing nitrile hydratase subunit beta
YP_004549421.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: smd:Smed_2001 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004549422.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2002 lysine exporter protein LysE/YggA
YP_004549423.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2003 methyltransferase type 11
YP_004549424.1	KEGG: smd:Smed_2004 hypothetical protein
YP_004549425.1	KEGG: smd:Smed_2005 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004549426.1	KEGG: smd:Smed_2006 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004549427.1	KEGG: smd:Smed_2007 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT
YP_004549428.1	TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: smd:Smed_2008 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004549429.1	PFAM: Domain of unknown function DUF87; HerA-ATP synthase, barrel domain; KEGG: smd:Smed_2009 hypothetical protein
YP_004549430.1	KEGG: smd:Smed_2010 hypothetical protein
YP_004549431.1	KEGG: rhi:NGR_c20200 hypothetical protein
YP_004549432.1	PFAM: tRNA isopentenyltransferase; Isopentenyl transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: smd:Smed_2011 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase
YP_004549433.1	TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: smd:Smed_2012 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase
YP_004549434.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2013 GCN5-related N-acetyltransferase
YP_004549435.1	TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: smd:Smed_2014 protease Do; SMART: PDZ/DHR/GLGF
YP_004549436.1	KEGG: smd:Smed_2015 amino acid-binding ACT domain-containing protein
YP_004549437.1	PFAM: Protein of unknown function DUF2065; KEGG: smd:Smed_2016 hypothetical protein
YP_004549438.1	TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: smd:Smed_2017 HflC protein; SMART: Band 7 protein
YP_004549439.1	TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: smd:Smed_2018 HflK protein; SMART: Band 7 protein
YP_004549440.1	KEGG: smd:Smed_2019 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain
YP_004549441.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: smd:Smed_2020 glutathione S-transferase domain-containing protein
YP_004549442.1	PFAM: Thymidylate synthase; TIGRFAM: Thymidylate synthase; HAMAP: Thymidylate synthase; KEGG: smd:Smed_2021 thymidylate synthase
YP_004549443.1	KEGG: smd:Smed_2022 hypothetical protein
YP_004549444.1	KEGG: smd:Smed_2023 hypothetical protein
YP_004549445.1	KEGG: smd:Smed_2024 hypothetical protein
YP_004549446.1	PFAM: Protein of unknown function DUF2267; KEGG: mes:Meso_3527 hypothetical protein
YP_004549447.1	KEGG: smd:Smed_2026 hypothetical protein
YP_004549448.1	KEGG: smd:Smed_2027 hypothetical protein
YP_004549449.1	KEGG: smd:Smed_2028 hypothetical protein
YP_004549450.1	KEGG: smd:Smed_2029 hypothetical protein
YP_004549451.1	KEGG: smd:Smed_2030 hypothetical protein
YP_004549452.1	KEGG: smd:Smed_2031 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004549453.1	PFAM: Protein of unknown function DUF1772; KEGG: smd:Smed_2032 hypothetical protein
YP_004549454.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_2033 acriflavin resistance protein
YP_004549455.1	KEGG: smd:Smed_2034 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004549456.1	PFAM: Putative cyclase; KEGG: smd:Smed_2035 cyclase family protein
YP_004549457.1	KEGG: smd:Smed_2036 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004549458.1	PFAM: DNA helicase, UvrD/REP type; KEGG: rhi:NGR_c20770 DNA helicase II
YP_004549459.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2044 GCN5-related N-acetyltransferase
YP_004549460.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_2045 phosphoribosyltransferase
YP_004549461.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_2046 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004549462.1	PFAM: Uncharacterised protein family CreA; KEGG: smd:Smed_2047 CreA family protein
YP_004549463.1	KEGG: smd:Smed_2048 putative signal peptide protein
YP_004549464.1	KEGG: smd:Smed_2049 putative signal peptide protein
YP_004549465.1	KEGG: smd:Smed_2050 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_004549466.1	KEGG: smd:Smed_2051 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004549467.1	KEGG: smd:Smed_2052 putative signal peptide protein
YP_004549468.1	PFAM: Copper chaperone SCO1/SenC; KEGG: smd:Smed_2053 electron transport protein SCO1/SenC
YP_004549469.1	KEGG: smd:Smed_2054 ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA
YP_004549470.1	KEGG: rlt:Rleg2_4631 hypothetical protein
YP_004549471.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_2055 peptidase M24
YP_004549472.1	KEGG: smd:Smed_2056 putative signal peptide protein
YP_004549473.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: smd:Smed_2057 branched-chain amino acid transport
YP_004549474.1	PFAM: Branched-chain amino acid transport, permease; KEGG: smd:Smed_2058 AzlC family protein
YP_004549475.1	PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: smd:Smed_2059 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004549476.1	TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: smd:Smed_2060 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_004549477.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2061 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549478.1	SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: smd:Smed_2070 NAD-dependent DNA ligase LigA; HAMAP: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; BRCT
YP_004549479.1	KEGG: smd:Smed_2071 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC
YP_004549480.1	TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: smd:Smed_2072 hypothetical protein
YP_004549481.1	TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: smd:Smed_2073 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase
YP_004549482.1	TIGRFAM: Cell division protein FtsZ, N-terminal; Cell division protein FtsZ, C-terminal extension; PFAM: Tubulin/FtsZ, GTPase domain; KEGG: smd:Smed_2074 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_004549483.1	TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: smd:Smed_2075 cell division protein FtsA; SMART: Cell division protein FtsA domain
YP_004549484.1	PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: smd:Smed_2076 cell division protein FtsQ
YP_004549485.1	TIGRFAM: D-alanine--D-alanine ligase; KEGG: smd:Smed_2077 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal
YP_004549486.1	KEGG: smd:Smed_2078 aquaporin Z; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein
YP_004549487.1	KEGG: smd:Smed_2079 major facilitator superfamily metabolite/H(+) symporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter
YP_004549488.1	PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: smd:Smed_2080 UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004549489.1	PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: smd:Smed_2081 UDP-N-acetylmuramate--L-alanine ligase
YP_004549490.1	TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: smd:Smed_2082 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28
YP_004549491.1	KEGG: smd:Smed_2083 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein
YP_004549492.1	PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: smd:Smed_2084 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
YP_004549493.1	TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: smd:Smed_2085 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_004549494.1	TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: smd:Smed_2086 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal
YP_004549495.1	PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: smd:Smed_2087 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
YP_004549496.1	KEGG: smd:Smed_2088 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain
YP_004549497.1	KEGG: smd:Smed_2089 hypothetical protein
YP_004549498.1	TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: smd:Smed_2090 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW
YP_004549499.1	KEGG: rhi:NGR_c21160 cell division protein MraZ; HAMAP: MraZ; PFAM: MraZ domain
YP_004549500.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2102 FAD dependent oxidoreductase
YP_004549501.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_2103 lytic transglycosylase catalytic
YP_004549502.1	KEGG: smd:Smed_2104 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Peptidoglycan binding-like; SMART: N-acetylmuramoyl-L-alanine amidase, family 2
YP_004549503.1	KEGG: smd:Smed_2105 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004549504.1	KEGG: smd:Smed_2106 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: Phosphofructokinase domain
YP_004549505.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2107 lysine exporter protein LysE/YggA
YP_004549506.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_2108 lytic transglycosylase catalytic
YP_004549507.1	PFAM: Beta-lactamase-related; KEGG: smd:Smed_2109 beta-lactamase
YP_004549508.1	KEGG: smd:Smed_2110 hypothetical protein
YP_004549509.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2111 methyltransferase type 11
YP_004549510.1	PFAM: Glycoside hydrolase, family 25; KEGG: smd:Smed_2112 glycoside hydrolase family protein; SMART: Glycoside hydrolase, family 25 subgroup
YP_004549511.1	KEGG: smd:Smed_2113 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like
YP_004549512.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2114 hypothetical protein
YP_004549513.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: smd:Smed_2115 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase
YP_004549514.1	KEGG: smd:Smed_2116 methyltransferase type 11; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004549515.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter ATP-binding protein, ChvD; KEGG: smd:Smed_2117 putative ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004549516.1	PFAM: Ribonuclease T2; KEGG: smd:Smed_2118 putative ribonuclease protein
YP_004549517.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2119 hypothetical protein
YP_004549518.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2120 hypothetical protein
YP_004549519.1	KEGG: smd:Smed_2121 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain
YP_004549520.1	KEGG: smd:Smed_2123 hypothetical protein; TIGRFAM: Beta-lactamase hydrolase-like; PFAM: Beta-lactamase hydrolase-like
YP_004549521.1	KEGG: smd:Smed_2124 hypothetical protein
YP_004549522.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_2125 ErfK/YbiS/YcfS/YnhG family protein
YP_004549523.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2126 FAD dependent oxidoreductase
YP_004549524.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_2127 cobyrinic acid ac-diamide synthase
YP_004549525.1	KEGG: smd:Smed_2128 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004549526.1	PFAM: Aldehyde dehydrogenase domain; KEGG: rhi:NGR_c21440 aldehyde dehydrogenase
YP_004549527.1	KEGG: smd:Smed_2130 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004549528.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_2131 amino acid permease-associated region
YP_004549529.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2132 N-formylglutamate amidohydrolase
YP_004549530.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_2133 RpiR family transcriptional regulator
YP_004549531.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2134 extracellular solute-binding protein
YP_004549532.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2135 binding-protein-dependent transport systems inner membrane component
YP_004549533.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2136 binding-protein-dependent transport systems inner membrane component
YP_004549534.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2137 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549535.1	HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: smd:Smed_2138 riboflavin synthase subunit beta; PFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004549536.1	KEGG: smd:Smed_2139 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004549537.1	KEGG: smd:Smed_2140 ferrichrome receptor precursor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel
YP_004549538.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_004549539.1	KEGG: smd:Smed_2149 ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; PFAM: Ribose/galactose isomerase
YP_004549540.1	TIGRFAM: Triosephosphate isomerase; KEGG: smd:Smed_2150 triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_004549541.1	KEGG: smd:Smed_2151 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004549542.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_2152 xylose isomerase domain-containing protein
YP_004549543.1	KEGG: smd:Smed_2153 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA, hypothetical 3; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase
YP_004549544.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: smd:Smed_2154 carbohydrate kinase FGGY
YP_004549545.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: smd:Smed_2155 class II aldolase/adducin family protein
YP_004549546.1	KEGG: smd:Smed_2156 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_004549547.1	KEGG: smd:Smed_2157 class II aldolase/adducin family protein; PFAM: Class II aldolase/adducin, N-terminal
YP_004549548.1	KEGG: smd:Smed_2158 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004549549.1	KEGG: smd:Smed_2159 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004549550.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2160 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549551.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2161 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549552.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2162 binding-protein-dependent transport systems inner membrane component
YP_004549553.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2163 binding-protein-dependent transport systems inner membrane component
YP_004549554.1	PFAM: Bacterial extracellular solute-binding, family 1; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; KEGG: smd:Smed_2164 extracellular solute-binding protein
YP_004549555.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2165 DeoR family transcriptional regulator
YP_004549556.1	KEGG: rhi:NGR_b03650 putative transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004549557.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_2167 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004549558.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2168 putative periplasmic binding ABC transporter protein
YP_004549559.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2169 binding-protein-dependent transport systems inner membrane component
YP_004549560.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2170 binding-protein-dependent transport systems inner membrane component
YP_004549561.1	KEGG: smd:Smed_2171 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549562.1	KEGG: smd:Smed_2172 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004549563.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: smd:Smed_2173 hypothetical protein
YP_004549564.1	KEGG: smd:Smed_2174 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004549565.1	KEGG: rhi:NGR_c21590 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004549566.1	KEGG: smd:Smed_2176 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding
YP_004549567.1	PFAM: Crotonase, core; KEGG: smd:Smed_2177 carnitinyl-CoA dehydratase
YP_004549568.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2178 extracellular solute-binding protein
YP_004549569.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2179 binding-protein-dependent transport systems inner membrane component
YP_004549570.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2180 binding-protein-dependent transport systems inner membrane component
YP_004549571.1	KEGG: rhi:NGR_c21650 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_004549572.1	KEGG: smd:Smed_2182 putative transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004549573.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2183 extracellular solute-binding protein
YP_004549574.1	KEGG: smd:Smed_2184 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_004549575.1	PFAM: Protein of unknown function DUF2241; KEGG: ppg:PputGB1_3028 hypothetical protein
YP_004549576.1	KEGG: smd:Smed_2185 alpha/beta hydrolase domain-containing protein
YP_004549577.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_c21680 putative transcriptional regulator, LysR family
YP_004549578.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2187 extracellular solute-binding protein
YP_004549579.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2188 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549580.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2189 binding-protein-dependent transport systems inner membrane component
YP_004549581.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2190 binding-protein-dependent transport systems inner membrane component
YP_004549582.1	KEGG: smd:Smed_2191 gamma-aminobutyraldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004549583.1	KEGG: smd:Smed_2192 ferrioxamine B receptor precursor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_004549584.1	PFAM: FhuF/siderophore biosynthesis protein; KEGG: smd:Smed_2193 ferric iron reductase
YP_004549585.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_2194 ferrichrome/ferrioxamine B periplasmic transporter
YP_004549586.1	KEGG: smd:Smed_2195 hypothetical protein
YP_004549587.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_2196 trimethylamine methyltransferase
YP_004549588.1	KEGG: smd:Smed_2197 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Glycine cleavage T-protein, N-terminal
YP_004549589.1	KEGG: smd:Smed_2198 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004549590.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_2199 LysR family transcriptional regulator
YP_004549591.1	PFAM: Uncharacterised conserved protein UCP007542; KEGG: smd:Smed_2200 hypothetical protein
YP_004549592.1	PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: smd:Smed_2201 methionine gamma-lyase
YP_004549593.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2204 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549594.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2205 TetR family transcriptional regulator
YP_004549595.1	PFAM: Crotonase, core; KEGG: smd:Smed_2206 enoyl-CoA hydratase
YP_004549596.1	KEGG: smd:Smed_2207 hypothetical protein
YP_004549597.1	PFAM: Protein of unknown function DUF2329; KEGG: smd:Smed_2208 hypothetical protein
YP_004549598.1	KEGG: smd:Smed_2209 hypothetical protein; PFAM: Protein of unknown function DUF1194; SMART: von Willebrand factor, type A
YP_004549599.1	KEGG: smd:Smed_2210 hypothetical protein
YP_004549600.1	KEGG: smd:Smed_2211 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like
YP_004549601.1	KEGG: smd:Smed_2212 hypothetical protein
YP_004549602.1	KEGG: smd:Smed_2213 SARP family transcriptional regulator
YP_004549603.1	KEGG: dmo:Dmoj_GI17107 GI17107 gene product from transcript GI17107-RA
YP_004549604.1	KEGG: smd:Smed_2214 aminoglycoside N(3')-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase
YP_004549605.1	KEGG: smd:Smed_2279 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004549606.1	KEGG: smd:Smed_4456 hypothetical protein
YP_004549607.1	KEGG: rlg:Rleg_6080 hypothetical protein
YP_004549608.1	KEGG: bbt:BBta_4489 putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; PFAM: FMN-dependent dehydrogenase
YP_004549609.1	KEGG: ara:Arad_7004 hypothetical protein
YP_004549610.1	KEGG: avi:Avi_2125 hypothetical protein
YP_004549611.1	KEGG: rec:RHECIAT_CH0000287 putative haloacid dehydrogenase hydrolase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004549612.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pap:PSPA7_2638 putative acetyltransferase
YP_004549613.1	KEGG: smd:Smed_5251 hypothetical protein
YP_004549614.1	KEGG: avi:Avi_3258 hypothetical protein
YP_004549615.1	KEGG: smd:Smed_5723 hypothetical protein
YP_004549616.1	KEGG: atu:Atu4427 replicative DNA helicase; manually curated; PFAM: DNA helicase, DnaB-like, C-terminal
YP_004549617.1	KEGG: cth:Cthe_2225 methylmalonyl-CoA epimerase
YP_004549618.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: gvi:gll0947 alginate O-acetylation protein
YP_004549619.1	KEGG: bpb:bpr_I0539 hypothetical protein
YP_004549620.1	KEGG: scl:sce8222 hypothetical protein
YP_004549621.1	TIGRFAM: FkbH domain; HAD-superfamily phosphatase, subfamily IIIC; KEGG: xau:Xaut_0884 FkbH like protein
YP_004549622.1	KEGG: mmw:Mmwyl1_1514 hypothetical protein
YP_004549623.1	manually curated; KEGG: rlt:Rleg2_2435 hypothetical protein
YP_004549624.1	KEGG: oan:Oant_2285 hypothetical protein
YP_004549625.1	KEGG: bph:Bphy_7155 hypothetical protein
YP_004549626.1	KEGG: bbk:BARBAKC583_0241 hypothetical protein
YP_004549627.1	PFAM: Protein of unknown function DUF847; Peptidoglycan binding domain; KEGG: mlo:mlr8035 hypothetical protein
YP_004549628.1	KEGG: cyj:Cyan7822_5782 PA14 domain-containing protein
YP_004549629.1	KEGG: lxx:Lxx05450 penicillin-binding protein
YP_004549630.1	KEGG: rec:RHECIAT_CH0003085 hypothetical fusion protein
YP_004549631.1	KEGG: oan:Oant_0256 fibronectin type III domain-containing protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III
YP_004549632.1	KEGG: oan:Oant_0255 hypothetical protein
YP_004549633.1	KEGG: oan:Oant_0253 hypothetical protein
YP_004549634.1	KEGG: oan:Oant_0252 hypothetical protein
YP_004549635.1	KEGG: avi:Avi_6196 phage tail protein
YP_004549636.1	PFAM: Protein of unknown function DUF3356; KEGG: pth:PTH_2180 hypothetical protein
YP_004549637.1	PFAM: Phage major tail protein TP901-1; KEGG: avi:Avi_6193 outer capsid protein Hoc
YP_004549638.1	PFAM: Protein of unknown function DUF3168; KEGG: rsh:Rsph17029_3324 hypothetical protein
YP_004549639.1	KEGG: rsh:Rsph17029_0639 HK97 family phage protein; TIGRFAM: Phage protein, HK97, gp10; PFAM: Protein of unknown function DUF646, phage head/tail component
YP_004549640.1	KEGG: rsp:RSP_2066 hypothetical protein; TIGRFAM: Phage head-tail joining protein; PFAM: Phage head-tail joining protein
YP_004549641.1	KEGG: sit:TM1040_1619 phiE125 gp8 hypothetical protein
YP_004549642.1	KEGG: ske:Sked_24700 hypothetical protein
YP_004549643.1	TIGRFAM: Bacteriophage HK97, major capsid protein; KEGG: sit:TM1040_1668 phage major capsid protein, HK97
YP_004549644.1	KEGG: mch:Mchl_1601 phage prohead protease, HK97 family; TIGRFAM: Peptidase U35, phage prohead HK97; PFAM: Peptidase U35, phage prohead HK97
YP_004549645.1	KEGG: sit:TM1040_1670 phage portal protein, HK97; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein
YP_004549646.1	PFAM: Phage Terminase; KEGG: rsq:Rsph17025_1750 phage terminase
YP_004549647.1	manually curated; KEGG: mno:Mnod_6996 hypothetical protein
YP_004549648.1	KEGG: nwi:Nwi_0813 hypothetical protein
YP_004549649.1	KEGG: plm:Plim_1607 aminotransferase class V
YP_004549650.1	KEGG: smd:Smed_1329 hypothetical protein
YP_004549651.1	KEGG: smd:Smed_1330 hypothetical protein
YP_004549652.1	KEGG: cak:Caul_3469 hypothetical protein
YP_004549653.1	KEGG: rcp:RCAP_rcc00942 hypothetical protein
YP_004549654.1	PFAM: DNA methylase N-4/N-6; KEGG: sth:STH334 DNA modification methylase M.SthI
YP_004549655.1	KEGG: sth:STH333 restriction endonuclease R.SthI; PFAM: Restriction endonuclease, type II, XcyI
YP_004549656.1	SMART: HNH nuclease; KEGG: rsh:Rsph17029_3313 HNH endonuclease
YP_004549657.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_1864 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004549658.1	KEGG: rec:RHECIAT_CH0002079 hypothetical protein
YP_004549659.1	KEGG: met:M446_3177 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004549660.1	KEGG: smt:Smal_2527 hypothetical protein
YP_004549662.1	KEGG: smd:Smed_1899 hypothetical protein
YP_004549663.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_1899 hypothetical protein
YP_004549664.1	KEGG: mno:Mnod_3560 hypothetical protein
YP_004549665.1	KEGG: mes:Meso_1202 hypothetical protein
YP_004549666.1	KEGG: mab:MAB_3299c hypothetical protein
YP_004549667.1	KEGG: mlo:mlr8507 hypothetical protein
YP_004549668.1	KEGG: sit:TM1040_1316 hypothetical protein
YP_004549669.1	PFAM: GcrA cell cycle regulator; KEGG: bra:BRADO6781 hypothetical protein
YP_004549670.1	KEGG: mes:Meso_1198 hypothetical protein
YP_004549671.1	KEGG: atu:Atu0444 hypothetical protein
YP_004549672.1	KEGG: pfo:Pfl01_4456 insecticidal toxin protein, putative
YP_004549673.1	KEGG: kse:Ksed_26630 hypothetical protein
YP_004549674.1	KEGG: psa:PST_1741 penicillin amidase
YP_004549675.1	KEGG: xau:Xaut_3605 hypothetical protein
YP_004549676.1	KEGG: btr:Btr_2303 bacteriophage recombination protein; TIGRFAM: Phage recombination protein Bet; PFAM: DNA single-strand annealing protein RecT-like
YP_004549677.1	KEGG: sti:Sthe_0201 short-chain dehydrogenase/reductase SDR
YP_004549679.1	KEGG: rcu:RCOM_1779220 hypothetical protein
YP_004549680.1	KEGG: pde:Pden_4508 TrkA domain-containing protein
YP_004549681.1	KEGG: oca:OCAR_5559 hypothetical protein
YP_004549682.1	KEGG: dsh:Dshi_0989 hypothetical protein
YP_004549683.1	PFAM: Integrase, catalytic core, phage; KEGG: avi:Avi_6147 integrase
YP_004549684.1	PFAM: Protein of unknown function DUF541; KEGG: smd:Smed_2216 hypothetical protein
YP_004549685.1	KEGG: smd:Smed_2217 putative signal peptide protein
YP_004549686.1	KEGG: smd:Smed_2218 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02096; PFAM: Protein of unknown function DUF1486
YP_004549687.1	KEGG: smd:Smed_2219 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047
YP_004549688.1	PFAM: Protein of unknown function DUF1428; KEGG: smd:Smed_2220 hypothetical protein
YP_004549689.1	KEGG: smd:Smed_2221 putative transmembrane protein
YP_004549690.1	PFAM: GYD; KEGG: smd:Smed_2222 GYD family protein
YP_004549691.1	KEGG: smd:Smed_2223 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004549692.1	KEGG: smd:Smed_2224 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; TIGRFAM: L-threonine 3-dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004549693.1	TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: smd:Smed_2225 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/classII
YP_004549694.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: smd:Smed_2226 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase/RNase D C-terminal, HRDC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal
YP_004549695.1	KEGG: smd:Smed_2227 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain
YP_004549696.1	KEGG: smd:Smed_2228 GatB/YqeY domain-containing protein
YP_004549697.1	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: smd:Smed_2229 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_004549698.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2230 LysR family transcriptional regulator
YP_004549699.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2231 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004549700.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: smd:Smed_2232 6-phosphogluconate dehydrogenase NAD-binding
YP_004549701.1	KEGG: smd:Smed_2233 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004549702.1	KEGG: smd:Smed_2234 hypothetical protein
YP_004549703.1	KEGG: smd:Smed_2235 hypothetical protein
YP_004549704.1	KEGG: smd:Smed_2236 glucose sorbosone dehydrogenase
YP_004549705.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2237 hypothetical protein
YP_004549706.1	KEGG: smd:Smed_2238 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004549707.1	PFAM: BA14K-like; KEGG: smd:Smed_2239 hypothetical protein
YP_004549708.1	KEGG: smd:Smed_2240 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004549709.1	KEGG: smd:Smed_2241 hypothetical protein
YP_004549710.1	PFAM: Protein of unknown function DUF1236; SH3, type 3; KEGG: smd:Smed_2242 hypothetical protein
YP_004549711.1	KEGG: smd:Smed_2243 hypothetical protein
YP_004549712.1	KEGG: smd:Smed_2244 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004549713.1	KEGG: smd:Smed_2245 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004549714.1	KEGG: smd:Smed_2246 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004549715.1	KEGG: smd:Smed_2247 export-related chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding domain
YP_004549716.1	TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: smd:Smed_2249 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_004549717.1	PFAM: Protein of unknown function DUF1790; KEGG: smd:Smed_2250 hypothetical protein
YP_004549718.1	PFAM: Protein of unknown function DUF526; KEGG: smd:Smed_2251 hypothetical protein
YP_004549719.1	TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: smd:Smed_2252 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase
YP_004549720.1	PFAM: Protein of unknown function DUF185; KEGG: smd:Smed_2253 hypothetical protein
YP_004549721.1	KEGG: smd:Smed_2254 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase
YP_004549722.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_2255 peptidase M24
YP_004549723.1	KEGG: smd:Smed_2256 hypothetical protein
YP_004549724.1	TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: smd:Smed_2257 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase
YP_004549725.1	KEGG: smd:Smed_2258 hypothetical protein
YP_004549726.1	PFAM: Protein of unknown function DUF779; KEGG: rhi:NGR_c23140 hypothetical protein
YP_004549727.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_2260 aldehyde dehydrogenase
YP_004549728.1	PFAM: GAF; Helix-turn-helix, Fis-type; KEGG: smd:Smed_2261 fis family transcriptional regulator
YP_004549729.1	KEGG: smd:Smed_2262 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein
YP_004549730.1	TIGRFAM: Ribosomal protein L25, long-form; HAMAP: Ribosomal protein L25, long-form; KEGG: smd:Smed_2263 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, short-form
YP_004549731.1	PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: smd:Smed_2264 peptidyl-tRNA hydrolase
YP_004549732.1	KEGG: smd:Smed_2265 ATP-dependent Clp protease adaptor; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_004549733.1	KEGG: smd:Smed_2266 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related
YP_004549734.1	KEGG: pop:POPTR_411908 hypothetical protein
YP_004549735.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2268 dehydratase
YP_004549736.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2269 dehydratase
YP_004549737.1	TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: smd:Smed_2270 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004549738.1	KEGG: smd:Smed_2271 hypothetical protein
YP_004549739.1	PFAM: Poly A polymerase, head domain; KEGG: smd:Smed_2272 polynucleotide adenylyltransferase region
YP_004549740.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_2273 NUDIX hydrolase
YP_004549741.1	PFAM: Protein of unknown function DUF1285; KEGG: rhi:NGR_c23340 hypothetical protein
YP_004549742.1	PFAM: ATPase, AAA-3; KEGG: smd:Smed_2275 ATPase
YP_004549743.1	PFAM: Domain of unknown function DUF58; KEGG: smd:Smed_2276 hypothetical protein
YP_004549744.1	TIGRFAM: Double transmembrane domain; KEGG: smd:Smed_2277 hypothetical protein
YP_004549745.1	PFAM: Domain of unknown function DUF1355; KEGG: smd:Smed_2278 hypothetical protein
YP_004549746.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2280 GCN5-related N-acetyltransferase
YP_004549747.1	KEGG: smd:Smed_2281 putative glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal
YP_004549748.1	KEGG: oan:Oant_4542 hypothetical protein
YP_004549749.1	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: avi:Avi_9907 cell filamentation protein
YP_004549750.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_2282 NUDIX hydrolase
YP_004549751.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_2283 metallophosphoesterase
YP_004549752.1	KEGG: smd:Smed_2284 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004549753.1	KEGG: smd:Smed_2285 putative transmembrane anti-sigma factor
YP_004549754.1	PFAM: PilT protein, N-terminal; KEGG: ara:Arad_1786 hypothetical protein
YP_004549755.1	PFAM: Rv0623-like transcription factor; KEGG: smd:Smed_2286 transcription factor
YP_004549756.1	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: smd:Smed_2287 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YP_004549757.1	HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_2289 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP
YP_004549758.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: mmr:Mmar10_0023 TonB-dependent receptor
YP_004549759.1	KEGG: smd:Smed_2290 HupE/UreJ protein
YP_004549760.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2291 GCN5-related N-acetyltransferase
YP_004549761.1	KEGG: smd:Smed_2292 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase
YP_004549762.1	PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: smd:Smed_2293 7-cyano-7-deazaguanine reductase
YP_004549763.1	KEGG: smd:Smed_2294 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004549764.1	TIGRFAM: Anthranilate synthase, clad 3; Anthranilate synthase, glutamine amidotransferase domain; KEGG: smd:Smed_2295 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_004549765.1	KEGG: rlg:Rleg_3079 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TIGRFAM: TonB-dependent haemoglobin/transferrin/lactoferrin receptor; TonB-dependent haem/haemoglobin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_004549766.1	PFAM: Extensin-like, C-terminal; KEGG: smd:Smed_2297 extensin family protein
YP_004549767.1	HAMAP: Formate-tetrahydrofolate ligase, FTHFS; KEGG: rhi:NGR_c23560 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS
YP_004549768.1	KEGG: smd:Smed_2299 hypothetical protein
YP_004549769.1	KEGG: smd:Smed_2300 hypothetical protein
YP_004549770.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_004549771.1	PFAM: Domain of unknown function DUF559; KEGG: smd:Smed_2301 hypothetical protein
YP_004549772.1	KEGG: smd:Smed_2302 hypothetical protein
YP_004549773.1	KEGG: rhi:NGR_c23600 hypothetical protein
YP_004549774.1	KEGG: smd:Smed_2304 hypothetical protein
YP_004549775.1	KEGG: rhi:NGR_c23630 thymidine kinase; PFAM: Thymidine kinase
YP_004549776.1	KEGG: smd:Smed_2305 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain
YP_004549777.1	KEGG: smd:Smed_2306 binding-protein-dependent transport systems inner membrane component; TIGRFAM: ABC transporter, choline, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004549778.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, Choline, ATP-binding subunit; KEGG: smd:Smed_2307 ABC transporter related; PFAM: ABC transporter-like
YP_004549779.1	PFAM: Protein of unknown function DUF2470; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_2308 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004549780.1	KEGG: smd:Smed_2309 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004549781.1	PFAM: Chloramphenicol phosphotransferase-like; KEGG: smd:Smed_2310 hypothetical protein
YP_004549782.1	KEGG: smd:Smed_2317 omega amino acid--pyruvate transaminase; PFAM: Aminotransferase class-III
YP_004549783.1	PFAM: Amidohydrolase 1; TIGRFAM: Adenine deaminase; HAMAP: Adenine deaminase; KEGG: smd:Smed_2318 adenine deaminase
YP_004549784.1	KEGG: smd:Smed_2320 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004549785.1	KEGG: smd:Smed_2321 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004549786.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2322 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549787.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_2323 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549788.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2324 binding-protein-dependent transport systems inner membrane component
YP_004549789.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2325 binding-protein-dependent transport systems inner membrane component
YP_004549790.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2326 extracellular solute-binding protein
YP_004549791.1	PFAM: Peptidase M19, renal dipeptidase; KEGG: smd:Smed_2327 peptidase M19 renal dipeptidase
YP_004549792.1	PFAM: Small multidrug resistance protein; KEGG: smd:Smed_2328 small multidrug resistance protein
YP_004549793.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2329 TetR family transcriptional regulator
YP_004549794.1	KEGG: gpb:HDN1F_31070 nitrogen regulatory protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_004549795.1	KEGG: vei:Veis_4147 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc
YP_004549796.1	PFAM: Globin, truncated bacterial-like; KEGG: rhi:NGR_c24500 putative globin family protein
YP_004549797.1	PFAM: Protein of unknown function DUF423; KEGG: smd:Smed_2331 hypothetical protein
YP_004549798.1	PFAM: Prevent-host-death protein; KEGG: rlg:Rleg_2910 prevent-host-death family protein
YP_004549799.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_2332 antibiotic biosynthesis monooxygenase
YP_004549800.1	KEGG: smd:Smed_2333 hypothetical protein
YP_004549801.1	KEGG: smd:Smed_2334 hypothetical protein
YP_004549802.1	TIGRFAM: TonB, C-terminal; KEGG: smd:Smed_2335 TonB family protein
YP_004549803.1	KEGG: smd:Smed_2336 hypothetical protein
YP_004549804.1	KEGG: smd:Smed_2337 hemin uptake protein-like protein; manually curated; PFAM: Hemin uptake protein HemP
YP_004549805.1	PFAM: Haemin-degrading HemS; KEGG: smd:Smed_2338 hemin-degrading family protein
YP_004549806.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_2339 periplasmic binding protein
YP_004549807.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_2340 transport system permease protein
YP_004549808.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2341 hemin importer ATP-binding subunit; SMART: ATPase, AAA+ type, core
YP_004549809.1	PFAM: Protein of unknown function DUF883, ElaB; KEGG: smd:Smed_2342 hypothetical protein
YP_004549810.1	KEGG: smd:Smed_2343 hypothetical protein
YP_004549811.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold-3; GAF; KEGG: smd:Smed_2344 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; PAS
YP_004549812.1	KEGG: smd:Smed_2345 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004549813.1	KEGG: smd:Smed_2346 hypothetical protein
YP_004549814.1	KEGG: smd:Smed_2347 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004549816.1	TIGRFAM: Carbohydrate kinase, FGGY-related; KEGG: smd:Smed_2351 FGGY-family pentulose kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004549817.1	KEGG: smd:Smed_2352 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004549818.1	KEGG: smd:Smed_2353 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal
YP_004549819.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2354 sorbitol dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004549820.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2355 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549821.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2356 binding-protein-dependent transport systems inner membrane component
YP_004549822.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2357 binding-protein-dependent transport systems inner membrane component
YP_004549823.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2358 extracellular solute-binding protein
YP_004549824.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2359 DeoR family transcriptional regulator
YP_004549825.1	KEGG: smd:Smed_2360 putative oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004549826.1	TIGRFAM: Dihydroorotate dehydrogenase, class 1; KEGG: smd:Smed_2361 dihydropyrimidine dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; tRNA-dihydrouridine synthase; 4Fe-4S binding domain
YP_004549827.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_2362 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004549828.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2363 LysR family transcriptional regulator
YP_004549829.1	KEGG: smd:Smed_2364 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Ferredoxin; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004549830.1	PFAM: Transcription regulator YcdC, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2365 TetR family transcriptional regulator
YP_004549831.1	TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: smd:Smed_2366 allantoate amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004549832.1	TIGRFAM: D-hydantoinase; KEGG: smd:Smed_2367 phenylhydantoinase; PFAM: Amidohydrolase 1
YP_004549833.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_2368 cupin 2 domain-containing protein
YP_004549834.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2369 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549835.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2370 GCN5-related N-acetyltransferase
YP_004549836.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2371 binding-protein-dependent transport systems inner membrane component
YP_004549837.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2372 binding-protein-dependent transport systems inner membrane component
YP_004549838.1	KEGG: rhi:NGR_c24890 ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein
YP_004549839.1	KEGG: smd:Smed_2374 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004549840.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_2375 acriflavin resistance protein
YP_004549841.1	TIGRFAM: Urease accessory protein UreG; HAMAP: Urease accessory protein UreG; KEGG: rhi:NGR_c24930 urease accessory protein UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like
YP_004549842.1	KEGG: smd:Smed_2378 urease accessory protein UreF; HAMAP: Urease accessory protein UreF; PFAM: Urease accessory protein UreF
YP_004549843.1	KEGG: smd:Smed_2379 urease accessory protein UreE; HAMAP: Urease accessory protein UreE; PFAM: UreE urease accessory, C-terminal; UreE urease accessory, N-terminal
YP_004549844.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_2380 antibiotic biosynthesis monooxygenase
YP_004549845.1	PFAM: Redoxin; KEGG: smd:Smed_2381 peroxiredoxin
YP_004549846.1	KEGG: gpb:HDN1F_36150 protein of unknown function DUF1044
YP_004549847.1	KEGG: alv:Alvin_3149 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004549848.1	PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; TIGRFAM: Urease, alpha subunit; HAMAP: Urease, alpha subunit; KEGG: rhi:NGR_c25000 urease subunit alpha
YP_004549849.1	KEGG: smd:Smed_2384 putative urease accessory protein
YP_004549850.1	PFAM: Protein of unknown function DUF1311; KEGG: smd:Smed_2385 hypothetical protein
YP_004549851.1	PFAM: Urease, beta subunit; TIGRFAM: Urease, beta subunit; HAMAP: Urease, beta subunit; KEGG: smd:Smed_2386 urease subunit beta
YP_004549852.1	PFAM: Protein of unknown function DUF1272; KEGG: smd:Smed_2387 hypothetical protein
YP_004549853.1	PFAM: Urease, alpha/gamma subunit; TIGRFAM: Urease, alpha/gamma subunit; HAMAP: Urease, gamma subunit; KEGG: rhi:NGR_c25050 urease subunit gamma
YP_004549854.1	KEGG: smd:Smed_2389 urease accessory protein UreD; HAMAP: Urease accessory protein UreD; PFAM: Urease accessory protein UreD
YP_004549855.1	KEGG: smd:Smed_2390 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004549856.1	KEGG: bpy:Bphyt_6690 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_004549857.1	KEGG: rhi:NGR_c25090 putative transcriptional regulator protein, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004549858.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_2392 extracellular ligand-binding receptor
YP_004549859.1	KEGG: smd:Smed_2393 hypothetical protein
YP_004549860.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2394 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549861.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2395 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549862.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c25190 putative transmembrane component of ABC transporter
YP_004549863.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c25200 putative transmembrane component of ABC transporter
YP_004549864.1	KEGG: smd:Smed_2398 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase
YP_004549865.1	KEGG: smd:Smed_2399 response regulator receiver protein
YP_004549866.1	PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; KEGG: smd:Smed_2400 CRP/FNR family transcriptional regulator
YP_004549867.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2401 short-chain dehydrogenase/reductase SDR
YP_004549868.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Phospholipase/carboxylesterase; KEGG: smd:Smed_2402 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549869.1	KEGG: cak:Caul_4973 hypothetical protein
YP_004549870.1	PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_2403 NADPH-dependent FMN reductase
YP_004549871.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2404 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549872.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: smd:Smed_2405 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004549873.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2406 binding-protein-dependent transport systems inner membrane component
YP_004549874.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2407 binding-protein-dependent transport systems inner membrane component
YP_004549875.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_2408 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004549876.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2409 extracellular solute-binding protein
YP_004549877.1	TIGRFAM: Putative agmatinase; KEGG: rhi:NGR_c25370 agmatinase SpeB; PFAM: Ureohydrolase
YP_004549878.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2411 LysR family transcriptional regulator
YP_004549879.1	KEGG: smd:Smed_2412 hypothetical protein; PFAM: Aminotransferase, class I/classII
YP_004549880.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2413 hypothetical protein
YP_004549881.1	KEGG: smd:Smed_2414 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004549882.1	KEGG: rhi:NGR_c25420 hypothetical protein
YP_004549883.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2415 FAD dependent oxidoreductase
YP_004549884.1	KEGG: smd:Smed_2416 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain
YP_004549885.1	KEGG: smd:Smed_2417 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004549886.1	KEGG: smd:Smed_2418 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004549887.1	KEGG: smd:Smed_2419 hypothetical protein; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004549888.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2420 extracellular solute-binding protein
YP_004549889.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2421 binding-protein-dependent transport systems inner membrane component
YP_004549890.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2422 binding-protein-dependent transport systems inner membrane component
YP_004549891.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2423 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549892.1	PFAM: Cytochrome c, class I; KEGG: rhi:NGR_c25510 cytochrome c family protein
YP_004549893.1	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: smd:Smed_2425 cytochrome c oxidase subunit II
YP_004549894.1	KEGG: smd:Smed_2426 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004549895.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_2427 cytochrome c oxidase subunit III
YP_004549896.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: smd:Smed_2428 cytochrome c oxidase subunit III
YP_004549897.1	KEGG: smd:Smed_2429 hypothetical protein
YP_004549898.1	KEGG: rhi:NGR_c25660 putative dehydrogenase; PFAM: Glycine cleavage T-protein, N-terminal; FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel
YP_004549899.1	KEGG: rpc:RPC_4637 hypothetical protein
YP_004549900.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_4700 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004549901.1	KEGG: smd:Smed_0908 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004549902.1	KEGG: pde:Pden_2155 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549903.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: pde:Pden_2163 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004549904.1	KEGG: smd:Smed_0909 Rieske (2Fe-2S) domain-containing protein; TIGRFAM: MocE Rieske [2Fe-2S]; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004549905.1	KEGG: smd:Smed_0910 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004549906.1	PFAM: Fatty acid hydroxylase; KEGG: smd:Smed_0911 sterol desaturase
YP_004549907.1	KEGG: smd:Smed_0913 xylose isomerase domain-containing protein
YP_004549908.1	PFAM: ABC transporter permease; KEGG: smd:Smed_0914 monosaccharide-transporting ATPase
YP_004549909.1	PFAM: ABC transporter-like; KEGG: smd:Smed_0915 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549910.1	KEGG: smd:Smed_0916 putative periplasmic binding ABC transporter protein
YP_004549911.1	KEGG: smd:Smed_2434 hypothetical protein
YP_004549912.1	KEGG: smd:Smed_2435 amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20
YP_004549913.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2436 extracellular solute-binding protein
YP_004549914.1	KEGG: smd:Smed_2437 putative beta-lactamase precursor protein
YP_004549915.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2439 binding-protein-dependent transport systems inner membrane component
YP_004549916.1	KEGG: smd:Smed_2440 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004549917.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2441 LysR family transcriptional regulator
YP_004549918.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2442 monosaccharide-transporting ATPase
YP_004549919.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2443 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549920.1	KEGG: smd:Smed_2444 putative periplasmic binding protein
YP_004549921.1	KEGG: mlo:mlr4639 penicillin-insensitive murein endopeptidase
YP_004549922.1	KEGG: smd:Smed_2445 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549923.1	KEGG: smd:Smed_2456 extracellular solute-binding protein
YP_004549924.1	KEGG: smd:Smed_2457 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_004549925.1	KEGG: smd:Smed_2458 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004549926.1	KEGG: smd:Smed_2460 glycerol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004549927.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2461 short-chain dehydrogenase/reductase SDR
YP_004549928.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2462 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004549929.1	PFAM: Glucose-6-phosphate isomerase, prokaryote; manually curated; KEGG: smd:Smed_2463 glucose-6-phosphate isomerase; HAMAP: Glucose-6-phosphate isomerase, subgroup
YP_004549930.1	TIGRFAM: KDPG/KHG aldolase; KEGG: smd:Smed_2464 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase
YP_004549931.1	KEGG: smd:Smed_2465 hypothetical protein
YP_004549932.1	KEGG: smd:Smed_2466 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004549933.1	KEGG: smd:Smed_2467 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004549934.1	PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: smd:Smed_2468 RpiR family transcriptional regulator
YP_004549935.1	TIGRFAM: Deoxyribose-phosphate aldolase; KEGG: smd:Smed_2469 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004549936.1	KEGG: smd:Smed_2471 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004549937.1	KEGG: smd:Smed_2472 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549938.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2473 monosaccharide-transporting ATPase
YP_004549939.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549940.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_2475 monosaccharide-transporting ATPase
YP_004549941.1	KEGG: smd:Smed_2476 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004549942.1	KEGG: smd:Smed_2477 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004549943.1	KEGG: smd:Smed_2478 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004549944.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_2479 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004549945.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rlt:Rleg2_2166 major facilitator superfamily MFS_1
YP_004549946.1	TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; KEGG: gur:Gura_3874 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
YP_004549947.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_3875 binding-protein-dependent transport systems inner membrane component
YP_004549948.1	PFAM: ABC transporter-like; KEGG: rva:Rvan_3614 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004549949.1	PFAM: 4Fe-4S binding domain; KEGG: pjd:Pjdr2_5464 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004549950.1	PFAM: FAD dependent oxidoreductase; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; KEGG: scl:sce3038 L-aspartate oxidase (LASPO)
YP_004549951.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nhl:Nhal_2971 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004549952.1	PFAM: Globin, truncated bacterial-like; KEGG: smd:Smed_5909 globin
YP_004549953.1	PFAM: Glutamine synthetase, catalytic domain; KEGG: smd:Smed_5349 glutamine synthetase catalytic region
YP_004549954.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_5348 RpiR family transcriptional regulator
YP_004549955.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_5347 N-formylglutamate amidohydrolase
YP_004549956.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5346 isochorismatase hydrolase
YP_004549957.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_5345 extracellular ligand-binding receptor
YP_004549958.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5344 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549959.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5343 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004549960.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5342 inner-membrane translocator
YP_004549961.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5341 inner-membrane translocator
YP_004549962.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5340 isochorismatase hydrolase
YP_004549963.1	KEGG: smd:Smed_5339 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_004549964.1	KEGG: smd:Smed_5797 amidohydrolase; PFAM: Amidohydrolase 1
YP_004549965.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5796 extracellular solute-binding protein
YP_004549966.1	KEGG: smd:Smed_5790 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1
YP_004549967.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5794 extracellular solute-binding protein
YP_004549968.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5793 binding-protein-dependent transport systems inner membrane component
YP_004549969.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5792 binding-protein-dependent transport systems inner membrane component
YP_004549970.1	KEGG: smd:Smed_5791 cytosine deaminase; PFAM: Amidohydrolase 3
YP_004549971.1	KEGG: smd:Smed_5790 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1
YP_004549972.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5789 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004549973.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5788 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004549974.1	KEGG: smd:Smed_5787 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004549975.1	KEGG: smd:Smed_5786 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004549976.1	KEGG: smd:Smed_5785 Asp/Glu racemase; PFAM: Asp/Glu/hydantoin racemase
YP_004549977.1	PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5894 FAD dependent oxidoreductase
YP_004549978.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rle:RL3106 LysR family transcriptional regulator
YP_004549979.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_004549980.1	PFAM: Integrase, catalytic core; KEGG: bja:bll5000 putative transposase
YP_004549981.1	KEGG: rle:RL3105 putative hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004549983.1	PFAM: Peptidase M23; KEGG: smd:Smed_2498 peptidase M23B
YP_004549984.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: smd:Smed_2499 ATPase; SMART: ATPase, AAA+ type, core
YP_004549986.1	KEGG: smd:Smed_2500 hypothetical protein
YP_004549987.1	KEGG: smd:Smed_2501 HemK family modification methylase; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small
YP_004549988.1	SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: smd:Smed_2502 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor
YP_004549989.1	SMART: GAF; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: smd:Smed_2503 phosphoenolpyruvate-protein phosphotransferase PtsP; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; GAF; PEP-utilising enzyme, mobile domain
YP_004549990.1	KEGG: smd:Smed_2504 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT
YP_004549991.1	PFAM: Methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: Ubiquinone biosynthesis O-methyltransferase; KEGG: smd:Smed_2506 3-demethylubiquinone-9 3-methyltransferase
YP_004549992.1	PFAM: Protein of unknown function DUF1178; KEGG: smd:Smed_2507 hypothetical protein
YP_004549993.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: smd:Smed_2508 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004549994.1	KEGG: smd:Smed_2509 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin
YP_004549995.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_2510 phosphoribosyltransferase
YP_004549996.1	KEGG: smd:Smed_2511 hypothetical protein
YP_004549997.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_2512 Flp/Fap pilin component
YP_004549998.1	KEGG: rhi:NGR_c26670 hypothetical protein
YP_004549999.1	KEGG: rhi:NGR_c26680 putative mutator protein MutT; TIGRFAM: Mutator MutT; PFAM: NUDIX hydrolase domain
YP_004550000.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2515 GCN5-related N-acetyltransferase
YP_004550001.1	PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: smd:Smed_2516 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
YP_004550002.1	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: smd:Smed_2517 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_004550003.1	SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: smd:Smed_2518 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif
YP_004550004.1	KEGG: smd:Smed_2519 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004550005.1	PFAM: Multi antimicrobial extrusion protein; KEGG: smd:Smed_2520 polysaccharide biosynthesis protein
YP_004550006.1	KEGG: smd:Smed_2521 hypothetical protein
YP_004550007.1	KEGG: smd:Smed_2522 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004550008.1	PFAM: Protein of unknown function DUF1778; KEGG: ppd:Ppro_1355 hypothetical protein
YP_004550009.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ppd:Ppro_1354 GCN5-related N-acetyltransferase
YP_004550010.1	KEGG: rhi:NGR_c26810 hypothetical protein
YP_004550011.1	KEGG: smd:Smed_2524 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004550012.1	KEGG: smd:Smed_2525 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain
YP_004550013.1	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: smd:Smed_2526 glutamyl-Q tRNA(Asp) synthetase
YP_004550014.1	KEGG: smd:Smed_2527 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004550015.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2528 short chain dehydrogenase
YP_004550016.1	KEGG: smd:Smed_2529 hypothetical protein
YP_004550017.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: smd:Smed_2530 ATP--cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type
YP_004550018.1	PFAM: Peptidase S54, rhomboid domain; KEGG: smd:Smed_2531 rhomboid family protein
YP_004550019.1	KEGG: smd:Smed_2532 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004550020.1	KEGG: smd:Smed_2533 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004550021.1	KEGG: smd:Smed_2534 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004550022.1	PFAM: Redoxin; KEGG: smd:Smed_2535 redoxin domain-containing protein
YP_004550023.1	PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: rhi:NGR_c26940 argininosuccinate lyase
YP_004550024.1	KEGG: smd:Smed_2537 hypothetical protein
YP_004550025.1	TIGRFAM: Diaminopimelate decarboxylase; KEGG: smd:Smed_2538 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004550026.1	TIGRFAM: Conserved hypothetical protein CHP02302, transmembrane; KEGG: smd:Smed_2539 hypothetical protein
YP_004550027.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_004550028.1	KEGG: smd:Smed_2540 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004550029.1	TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: smd:Smed_2541 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004550030.1	KEGG: smd:Smed_2542 hypothetical protein
YP_004550031.1	KEGG: smd:Smed_2543 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; manually curated; TIGRFAM: Cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core
YP_004550032.1	KEGG: smd:Smed_2544 hypothetical protein
YP_004550033.1	PFAM: Domain of unknown function DUF218; KEGG: smd:Smed_2545 hypothetical protein
YP_004550034.1	KEGG: rhi:NGR_c27040 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004550035.1	PFAM: ChaC-like protein; KEGG: smd:Smed_2547 ChaC family protein
YP_004550036.1	PFAM: Protein of unknown function DUF2125; KEGG: smd:Smed_2548 hypothetical protein
YP_004550037.1	KEGG: smd:Smed_2549 cyclohexadienyl dehydrogenase; PFAM: Prephenate dehydrogenase
YP_004550038.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: smd:Smed_2550 histidinol-phosphate aminotransferase
YP_004550039.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_2551 methyltransferase type 11
YP_004550040.1	SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: smd:Smed_2552 hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; PFAM: Beta-lactamase-like
YP_004550041.1	PFAM: Protein of unknown function DUF985; KEGG: smd:Smed_2553 hypothetical protein
YP_004550042.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2554 hypothetical protein
YP_004550043.1	KEGG: smd:Smed_2555 putative signal peptide protein
YP_004550045.1	TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: rhi:NGR_c27140 50S ribosomal protein L28; PFAM: Ribosomal protein L28
YP_004550046.1	KEGG: smd:Smed_2557 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165
YP_004550047.1	KEGG: smd:Smed_2558 putative signal peptide protein
YP_004550048.1	SMART: von Willebrand factor, type A; TIGRFAM: Cobalt chelatase, CobT subunit; KEGG: smd:Smed_2559 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit
YP_004550049.1	TIGRFAM: Cobalt chelatase, pCobS small subunit; KEGG: rhi:NGR_c27180 aerobic cobaltochelatase, CobS subunit; PFAM: ATPase, AAA-5
YP_004550050.1	KEGG: smd:Smed_2561 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004550051.1	PFAM: BolA protein; KEGG: smd:Smed_2562 BolA family protein
YP_004550052.1	PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: smd:Smed_2563 hypothetical protein
YP_004550053.1	PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: smd:Smed_2564 3-dehydroquinate synthase
YP_004550054.1	HAMAP: Shikimate kinase; KEGG: smd:Smed_2565 shikimate kinase; PFAM: Shikimate kinase
YP_004550055.1	PFAM: Plasmid stabilisation system; KEGG: dat:HRM2_09770 hypothetical protein
YP_004550056.1	KEGG: ara:Arad_1452 CopG/Arc/MetJ DNA-binding domain-containing transcriptional regulator; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_004550057.1	KEGG: smd:Smed_2566 putative signal peptide protein
YP_004550058.1	TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: smd:Smed_2567 site-specific tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_004550059.1	PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: smd:Smed_2568 acetyl-CoA carboxylase carboxyltransferase subunit alpha
YP_004550060.1	PFAM: YkuD domain; KEGG: smd:Smed_2569 hypothetical protein
YP_004550061.1	PFAM: SirA-like; KEGG: smd:Smed_2570 SirA family protein
YP_004550062.1	PFAM: PilT protein, N-terminal; KEGG: rva:Rvan_2480 PilT protein domain protein
YP_004550063.1	KEGG: rva:Rvan_2481 hypothetical protein
YP_004550064.1	KEGG: smd:Smed_2571 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004550065.1	KEGG: smd:Smed_2572 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal
YP_004550066.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: rhi:NGR_c27330 amidohydrolase family protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004550067.1	KEGG: smd:Smed_2574 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004550068.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: smd:Smed_2575 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004550069.1	KEGG: smd:Smed_2576 AraC-like transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004550070.1	manually curated; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, MarR; KEGG: smd:Smed_2577 AsnC family transcriptional regulator; SMART: Transcription regulator AsnC-type
YP_004550071.1	KEGG: smd:Smed_2578 hypothetical protein; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase; Peptidase M23
YP_004550072.1	KEGG: smd:Smed_2579 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004550073.1	KEGG: smd:Smed_2580 hypothetical protein; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase
YP_004550074.1	TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: smd:Smed_2581 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004550075.1	KEGG: smd:Smed_2582 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1
YP_004550076.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_2583 substrate-binding region of ABC-type glycine betaine transport system
YP_004550077.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2584 binding-protein-dependent transport systems inner membrane component
YP_004550078.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2585 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550079.1	KEGG: smd:Smed_2586 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase
YP_004550080.1	PFAM: Nucleoside recognition; KEGG: smd:Smed_2587 nucleoside recognition domain-containing protein
YP_004550081.1	PFAM: Uncharacterised protein family HutD; KEGG: smd:Smed_2588 hypothetical protein
YP_004550082.1	KEGG: smd:Smed_2589 hypothetical protein
YP_004550083.1	KEGG: smd:Smed_2590 hypothetical protein
YP_004550084.1	KEGG: smd:Smed_2591 putative signal peptide protein
YP_004550085.1	KEGG: smd:Smed_2592 hypothetical protein
YP_004550086.1	KEGG: smd:Smed_2593 hypothetical protein
YP_004550087.1	KEGG: smd:Smed_2594 putative signal peptide protein
YP_004550088.1	KEGG: smd:Smed_1378 hypothetical protein
YP_004550089.1	TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: smd:Smed_2600 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase
YP_004550090.1	KEGG: smd:Smed_2601 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; Transcription factor LuxR-like, autoinducer-binding domain; SMART: Transcription regulator LuxR, C-terminal
YP_004550091.1	PFAM: Protein of unknown function DUF1153; KEGG: rhi:NGR_c27550 hypothetical protein
YP_004550092.1	KEGG: smd:Smed_2603 hypothetical protein
YP_004550093.1	KEGG: smd:Smed_2604 hypothetical protein
YP_004550094.1	KEGG: smd:Smed_2605 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004550095.1	KEGG: smd:Smed_2607 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004550096.1	PFAM: Protein of unknown function DUF2328; KEGG: smd:Smed_2608 hypothetical protein
YP_004550097.1	PFAM: Uncharacterised conserved protein UCP033924; KEGG: smd:Smed_2609 hypothetical protein
YP_004550098.1	KEGG: smd:Smed_2610 hypothetical protein
YP_004550099.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: smd:Smed_2611 tRNA/rRNA methyltransferase (SpoU)
YP_004550100.1	KEGG: smd:Smed_2612 hypothetical protein
YP_004550101.1	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: smd:Smed_2613 RluA family pseudouridine synthase; SMART: RNA-binding S4
YP_004550102.1	KEGG: smd:Smed_2614 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004550103.1	KEGG: smd:Smed_2615 hypothetical protein
YP_004550104.1	KEGG: smd:Smed_2616 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase
YP_004550105.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2617 hypothetical protein
YP_004550106.1	TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: smd:Smed_2618 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004550107.1	TIGRFAM: Phosphoserine aminotransferase, Methanosarcina-type; KEGG: smd:Smed_2619 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004550108.1	PFAM: Porin, opacity type; KEGG: smd:Smed_2620 putative heat resistant agglutinin 1 signal peptide protein
YP_004550109.1	PFAM: Porin, opacity type; KEGG: smd:Smed_2621 porin opacity type
YP_004550110.1	TIGRFAM: Phosphoglucosamine mutase; KEGG: smd:Smed_2622 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_004550111.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: smd:Smed_2623 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular
YP_004550112.1	TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; HAMAP: Lysidine-tRNA(Ile) synthetase; KEGG: smd:Smed_2624 tRNA(Ile)-lysidine synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase
YP_004550113.1	TIGRFAM: Tol-Pal system, YbgF; KEGG: smd:Smed_2625 Tol-Pal system YbgF
YP_004550114.1	KEGG: smd:Smed_2626 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal
YP_004550115.1	TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: smd:Smed_2627 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller
YP_004550116.1	KEGG: smd:Smed_2628 putative signal peptide protein
YP_004550117.1	KEGG: smd:Smed_2629 biopolymer transport TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_004550118.1	KEGG: smd:Smed_2630 Tol-Pal system TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel
YP_004550119.1	KEGG: smd:Smed_2631 DNA ligase D; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_004550120.1	KEGG: smd:Smed_2632 Pol-Pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily
YP_004550121.1	KEGG: smd:Smed_2633 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004550122.1	PFAM: Glycosyl transferase, family 8; KEGG: smd:Smed_2634 glycosyl transferase family protein
YP_004550123.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_2635 NAD-dependent epimerase/dehydratase
YP_004550124.1	PFAM: Metallo-dependent phosphatase; KEGG: rhi:NGR_c27900 putative phosphohydrolase
YP_004550125.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: smd:Smed_2637 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal
YP_004550126.1	TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: smd:Smed_2638 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal
YP_004550127.1	PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: rhi:NGR_c27930 Holliday junction resolvase
YP_004550128.1	KEGG: smd:Smed_2640 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup
YP_004550129.1	TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: smd:Smed_2641 hypothetical protein; PFAM: Protein of unknown function DUF28
YP_004550130.1	KEGG: smd:Smed_2642 hypothetical protein
YP_004550131.1	KEGG: smd:Smed_2643 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_004550132.1	KEGG: smd:Smed_2644 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004550133.1	KEGG: smd:Smed_2645 metallophosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; PFAM: Metallo-dependent phosphatase
YP_004550134.1	KEGG: smd:Smed_2646 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_004550135.1	KEGG: cnb:CNBA2060 hypothetical protein
YP_004550136.1	KEGG: smd:Smed_2647 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_004550137.1	PFAM: Cell division protein ZapA-like; KEGG: smd:Smed_2648 hypothetical protein
YP_004550138.1	KEGG: smd:Smed_2649 hypothetical protein
YP_004550139.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_2650 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004550140.1	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: smd:Smed_2651 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004550141.1	PFAM: Protein of unknown function DUF1089; KEGG: smd:Smed_2652 hypothetical protein
YP_004550142.1	HAMAP: Phosphoglycerate kinase; KEGG: smd:Smed_2653 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004550143.1	KEGG: smd:Smed_2654 fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase, class-I
YP_004550144.1	KEGG: smd:Smed_2655 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004550145.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: smd:Smed_2656 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide repeat
YP_004550146.1	KEGG: smd:Smed_2657 hypothetical protein
YP_004550147.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_2658 major facilitator transporter
YP_004550148.1	PFAM: Protein of unknown function DUF1192; KEGG: smd:Smed_2659 hypothetical protein
YP_004550149.1	PFAM: Protein of unknown function DUF1465; KEGG: smd:Smed_2660 hypothetical protein
YP_004550150.1	TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: smd:Smed_2661 50S ribosomal protein L31; PFAM: Ribosomal protein L31
YP_004550151.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding/permease protein; KEGG: smd:Smed_2662 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004550152.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: smd:Smed_2663 hypothetical protein
YP_004550153.1	KEGG: smd:Smed_2664 hypothetical protein
YP_004550154.1	KEGG: smd:Smed_2665 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase
YP_004550155.1	KEGG: smd:Smed_2666 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like
YP_004550156.1	PFAM: Thiamine monophosphate synthase; KEGG: smd:Smed_2667 thiamine-phosphate pyrophosphorylase
YP_004550157.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_2668 hypothetical protein
YP_004550158.1	KEGG: rhi:NGR_c28270 putative transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004550159.1	PFAM: Protein of unknown function DUF465; KEGG: smd:Smed_2670 hypothetical protein
YP_004550160.1	PFAM: Protein of unknown function DUF465; KEGG: smd:Smed_2671 hypothetical protein
YP_004550161.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: rhi:NGR_c28300 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core
YP_004550162.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: smd:Smed_2673 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
YP_004550163.1	TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: smd:Smed_2674 50S ribosomal protein L36; PFAM: Ribosomal protein L36
YP_004550164.1	PFAM: Tetratricopeptide TPR2; KEGG: smd:Smed_2675 TPR repeat-containing protein
YP_004550165.1	TIGRFAM: Pyruvate kinase; KEGG: smd:Smed_2676 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like
YP_004550166.1	PFAM: Protein of unknown function DUF1036; KEGG: smd:Smed_2677 hypothetical protein
YP_004550167.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2678 N-formylglutamate amidohydrolase
YP_004550168.1	PFAM: Protein of unknown function DUF1244; KEGG: smd:Smed_2679 hypothetical protein
YP_004550169.1	KEGG: smd:Smed_2680 hypothetical protein; HAMAP: Uncharacterised protein family UPF0335; PFAM: Uncharacterised protein family UPF0335
YP_004550170.1	PFAM: Protein of unknown function DUF882; KEGG: smd:Smed_2682 hypothetical protein
YP_004550171.1	KEGG: smd:Smed_2683 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_004550172.1	KEGG: smd:Smed_2684 PepF/M3 family oligoendopeptidase; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 3; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal
YP_004550173.1	TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: smd:Smed_2685 aminodeoxychorismate synthase; PFAM: Chorismate binding, C-terminal
YP_004550174.1	PFAM: Aminotransferase, class IV; KEGG: smd:Smed_2686 hypothetical protein
YP_004550175.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_2687 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004550176.1	KEGG: smd:Smed_2688 homospermidine synthase
YP_004550177.1	KEGG: smd:Smed_2689 putative outer membrane lipoprotein
YP_004550178.1	PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase; Peptidoglycan-binding lysin domain; KEGG: smd:Smed_2690 5'-nucleotidase domain-containing protein; SMART: Peptidoglycan-binding Lysin subgroup
YP_004550179.1	PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: smd:Smed_2691 ferrochelatase
YP_004550180.1	KEGG: smd:Smed_2704 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004550181.1	PFAM: Nodulation efficiency, NfeD; KEGG: smd:Smed_2705 hypothetical protein
YP_004550182.1	PFAM: Protein of unknown function DUF2320; KEGG: smd:Smed_2706 hypothetical protein
YP_004550183.1	TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: smd:Smed_2707 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_004550184.1	KEGG: smd:Smed_2708 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; Twin-arginine translocation pathway, signal sequence; PFAM: Peptidoglycan binding-like
YP_004550185.1	PFAM: Protein of unknown function DUF459; KEGG: smd:Smed_2709 hypothetical protein
YP_004550186.1	TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: smd:Smed_2710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004550187.1	KEGG: smd:Smed_2711 glutamate synthase (ferredoxin); PFAM: Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, central-C; Glutamate synthase, alpha subunit, C-terminal
YP_004550188.1	KEGG: smd:Smed_2712 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_004550189.1	PFAM: Bile acid:sodium symporter; KEGG: smd:Smed_2714 bile acid:sodium symporter
YP_004550190.1	TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: ara:Arad_8444 proline iminopeptidase protein; PFAM: Alpha/beta hydrolase fold-1
YP_004550191.1	KEGG: rec:RHECIAT_PC0000237 probable transcriptional regulator protein, LuxR family; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004550192.1	TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: ara:Arad_8441 proline iminopeptidase protein; PFAM: Alpha/beta hydrolase fold-1
YP_004550193.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_6194 binding-protein-dependent transport systems inner membrane component
YP_004550194.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_6373 binding-protein-dependent transport systems inner membrane component
YP_004550195.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: ara:Arad_8437 oligopeptide ABC transporter; SMART: ATPase, AAA+ type, core
YP_004550196.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: rlg:Rleg_6191 extracellular solute-binding protein family 5
YP_004550197.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_2715 heat shock protein HSP20
YP_004550198.1	manually curated; KEGG: smd:Smed_2716 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase, N-terminal
YP_004550199.1	KEGG: smd:Smed_2717 histidinol-phosphate phosphatase, putative; TIGRFAM: Histidinol-phosphate phosphatase, putative, inositol monophosphatase; PFAM: Inositol monophosphatase
YP_004550200.1	PFAM: N-formylglutamate amidohydrolase; KEGG: smd:Smed_2718 N-formylglutamate amidohydrolase
YP_004550201.1	KEGG: smd:Smed_2719 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004550202.1	PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: smd:Smed_2723 dihydroxy-acid dehydratase
YP_004550203.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_2724 glutathione-dependent formaldehyde-activating GFA
YP_004550204.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_004550205.1	KEGG: smd:Smed_2726 pseudoazurin; TIGRFAM: Pseudoazurin; PFAM: Blue (type 1) copper domain
YP_004550206.1	KEGG: smd:Smed_2727 putative cytochrome c protein
YP_004550207.1	KEGG: smd:Smed_2728 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin-binding domain; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Moybdenum cofactor oxidoreductase, dimerisation
YP_004550208.1	KEGG: smd:Smed_2729 putative transmembrane anti-sigma factor
YP_004550209.1	KEGG: smd:Smed_2730 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004550210.1	KEGG: smd:Smed_2731 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550211.1	PFAM: Protein of unknown function DUF1579; KEGG: smd:Smed_2732 hypothetical protein
YP_004550212.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2733 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004550213.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2734 LysR family transcriptional regulator
YP_004550214.1	KEGG: smd:Smed_2735 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004550215.1	PFAM: Domain of unknown function DUF404; Domain of unknown function DUF403; Domain of unknown function DUF407; KEGG: smd:Smed_2736 hypothetical protein
YP_004550216.1	KEGG: smd:Smed_2737 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like
YP_004550217.1	KEGG: smd:Smed_2738 von Willebrand factor type A; PFAM: TadE-like; SMART: von Willebrand factor, type A
YP_004550218.1	KEGG: smd:Smed_2739 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35
YP_004550219.1	KEGG: smd:Smed_2740 glycogen branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal all beta; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004550220.1	PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase GlgC, bacterial; KEGG: rhi:NGR_c28960 glucose-1-phosphate adenylyltransferase
YP_004550221.1	PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: smd:Smed_2742 glycogen synthase
YP_004550222.1	KEGG: smd:Smed_2743 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_004550223.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: smd:Smed_2744 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_004550224.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_2745 dehydratase
YP_004550225.1	PFAM: Uncharacterised conserved protein UCP012608; KEGG: smd:Smed_2746 hypothetical protein
YP_004550226.1	KEGG: smd:Smed_2747 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004550227.1	KEGG: smd:Smed_2749 sarcosine oxidase gamma subunit family protein; TIGRFAM: Sarcosine oxidase, gamma subunit, heterotetrameric; PFAM: Sarcosine oxidase, gamma subunit
YP_004550228.1	KEGG: smd:Smed_2750 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: Glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Glycine cleavage T-protein, C-terminal barrel
YP_004550229.1	KEGG: smd:Smed_2751 sarcosine oxidase delta subunit family protein; TIGRFAM: Sarcosine oxidase, delta subunit, heterotetrameric; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric
YP_004550230.1	TIGRFAM: Sarcosine oxidase, beta subunit, heterotetrameric; KEGG: smd:Smed_2752 sarcosine oxidase beta subunit family protein; PFAM: FAD dependent oxidoreductase
YP_004550231.1	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: rhi:NGR_c29060 30S ribosomal protein S21; PFAM: Ribosomal protein S21
YP_004550232.1	KEGG: smd:Smed_2754 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat
YP_004550233.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_2755 hypothetical protein
YP_004550234.1	SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_2756 putative adenylate/guanylate cyclase
YP_004550235.1	KEGG: smd:Smed_2757 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit
YP_004550236.1	KEGG: rhi:NGR_b16320 NAD/NADP transhydrogenase
YP_004550237.1	KEGG: smd:Smed_2759 NAD(P) transhydrogenase subunit alpha; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal
YP_004550238.1	PFAM: Cytochrome c oxidase, subunit IV, bacterial aa3 type; KEGG: smd:Smed_2760 aa3 type cytochrome c oxidase subunit IV
YP_004550239.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: rhi:NGR_c29150 putative transmembrane sensory box GGDEF/EAL protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS
YP_004550240.1	KEGG: smd:Smed_2762 peptidase C26; PFAM: Peptidase C26
YP_004550241.1	KEGG: smd:Smed_2763 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004550242.1	KEGG: smd:Smed_2764 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004550243.1	KEGG: smd:Smed_2765 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550244.1	PFAM: Creatininase; KEGG: smd:Smed_2766 creatininase
YP_004550245.1	KEGG: smd:Smed_2767 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004550246.1	KEGG: smd:Smed_2768 WD-40 repeat-containing protein
YP_004550247.1	KEGG: smd:Smed_2769 hypothetical protein
YP_004550248.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2770 lysine exporter protein LysE/YggA
YP_004550249.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2771 GCN5-related N-acetyltransferase
YP_004550250.1	KEGG: smd:Smed_2772 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004550251.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2773 LysR family transcriptional regulator
YP_004550252.1	PFAM: Protein of unknown function DUF1007; KEGG: smd:Smed_2774 hypothetical protein
YP_004550253.1	PFAM: Nickel/cobalt transporter, high-affinity; KEGG: smd:Smed_2775 high-affinity nickel-transporter
YP_004550254.1	PFAM: PilT protein, N-terminal; KEGG: avi:Avi_9882 hypothetical protein
YP_004550255.1	PFAM: Rv0623-like transcription factor; KEGG: avi:Avi_9881 hypothetical protein
YP_004550256.1	KEGG: smd:Smed_2776 hypothetical protein
YP_004550257.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2777 GCN5-related N-acetyltransferase
YP_004550258.1	PFAM: Protein of unknown function DUF533; KEGG: smd:Smed_2778 hypothetical protein
YP_004550259.1	TIGRFAM: KDPG/KHG aldolase; KEGG: smd:Smed_2779 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase
YP_004550260.1	PFAM: Adenylate cyclase; KEGG: smd:Smed_2780 adenylate cyclase
YP_004550261.1	KEGG: smd:Smed_2781 CHAD domain-containing protein; PFAM: CHAD; SMART: CHAD
YP_004550262.1	HAMAP: Uncharacterised protein family UPF0176; PFAM: Rhodanese-like; KEGG: smd:Smed_2782 rhodanese domain-containing protein; SMART: Rhodanese-like
YP_004550263.1	KEGG: smd:Smed_2783 YaeC family lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein
YP_004550264.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c29420 D-methionine transport system permease protein MetI
YP_004550265.1	PFAM: ABC transporter-like; NIL domain; KEGG: smd:Smed_2785 ABC transporter related; SMART: NIL domain; ATPase, AAA+ type, core
YP_004550266.1	TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase; KEGG: rhi:NGR_c29440 beta-glucosidase; PFAM: Glycoside hydrolase, family 1
YP_004550267.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_2787 oxidoreductase domain-containing protein
YP_004550268.1	PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: smd:Smed_2788 xylose isomerase domain-containing protein
YP_004550269.1	PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: smd:Smed_2789 xylose isomerase
YP_004550270.1	KEGG: smd:Smed_2791 xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004550271.1	KEGG: smd:Smed_2792 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004550272.1	PFAM: Metallo-dependent phosphatase; KEGG: rhi:NGR_c29510 hypothetical protein
YP_004550273.1	KEGG: smd:Smed_2794 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004550274.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_2795 secretion protein HlyD family protein
YP_004550275.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_2796 TetR family transcriptional regulator
YP_004550276.1	KEGG: smd:Smed_2797 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; HTH transcriptional regulator, AraC; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type, DNA binding domain
YP_004550277.1	PFAM: Integral membrane protein TerC; KEGG: smd:Smed_2798 integral membrane protein TerC
YP_004550278.1	TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: smd:Smed_2799 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_004550279.1	PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: smd:Smed_2800 lysyl-tRNA synthetase
YP_004550280.1	KEGG: smd:Smed_2801 hypothetical protein
YP_004550281.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: smd:Smed_2802 inosine/uridine-preferring nucleoside hydrolase
YP_004550282.1	KEGG: smd:Smed_2803 putative mRNA 3-end processing factor
YP_004550283.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: smd:Smed_2804 ATP-dependent DNA ligase
YP_004550284.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE; PAS fold-3; KEGG: smd:Smed_2805 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004550285.1	TIGRFAM: Monovalent cation/proton antiporter; Monovalent cation:proton antiporter; KEGG: smd:Smed_2806 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; Na+/H+ antiporter MnhB subunit-related protein
YP_004550286.1	KEGG: smd:Smed_2807 putative monovalent cation/H+ antiporter subunit C; TIGRFAM: Multicomponent Na+:H+ antiporter; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_004550287.1	TIGRFAM: MnhD; KEGG: smd:Smed_2808 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004550288.1	KEGG: smd:Smed_2809 cation antiporter; TIGRFAM: Monovalent cation Na+:H+ antiporter, MnhE subunit; PFAM: cation antiporter
YP_004550289.1	PFAM: Multiple resistance and pH regulation protein F; KEGG: smd:Smed_2810 putative monovalent cation/H+ antiporter subunit F
YP_004550290.1	KEGG: smd:Smed_2811 monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit
YP_004550291.1	KEGG: ara:Arad_0487 NAD(P)H dehydrogenase (quinone) protein; PFAM: Flavodoxin-like fold
YP_004550292.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mlo:mlr7815 transcriptional regulator
YP_004550293.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: smd:Smed_2812 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase
YP_004550294.1	PFAM: Tetrapyrrole methylase; manually curated; KEGG: smd:Smed_2813 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core
YP_004550295.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; KEGG: smd:Smed_2814 cobalt-precorrin-6x reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase
YP_004550296.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; KEGG: rhi:NGR_c29780 precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole methylase
YP_004550297.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: smd:Smed_2816 precorrin-2 C(20)-methyltransferase; PFAM: Tetrapyrrole methylase
YP_004550298.1	KEGG: smd:Smed_2817 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core
YP_004550299.1	PFAM: Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; manually curated; KEGG: smd:Smed_2818 precorrin-3B synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobG-like
YP_004550300.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: smd:Smed_2819 precorrin 6A synthase; PFAM: Tetrapyrrole methylase
YP_004550301.1	TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: smd:Smed_2820 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like
YP_004550302.1	KEGG: smd:Smed_2821 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Bacterial extracellular solute-binding, family 1
YP_004550303.1	KEGG: smd:Smed_2822 molybdate ABC transporter permease protein; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004550304.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: smd:Smed_2823 molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 1
YP_004550305.1	KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004550306.1	PFAM: HTH transcriptional regulator, LysR; KEGG: smd:Smed_2824 ModE family transcriptional regulator
YP_004550307.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2825 FAD dependent oxidoreductase
YP_004550309.1	KEGG: smd:Smed_2826 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: Dehydrogenase, E1 component
YP_004550310.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: smd:Smed_2827 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain
YP_004550311.1	KEGG: rhi:NGR_c29910 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004550312.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_2829 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004550313.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: rhi:NGR_c29940 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_004550314.1	TIGRFAM: Maleylacetoacetate isomerase; KEGG: smd:Smed_2831 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal
YP_004550315.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_2832 fumarylacetoacetate (FAA) hydrolase
YP_004550316.1	PFAM: Homogentisate 1,2-dioxygenase; TIGRFAM: Homogentisate 1,2-dioxygenase; HAMAP: Homogentisate 1,2-dioxygenase, bacterial; KEGG: smd:Smed_2833 homogentisate 1,2-dioxygenase
YP_004550317.1	KEGG: rhi:NGR_c29990 putative transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550318.1	KEGG: smd:Smed_2835 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004550319.1	TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: smd:Smed_2836 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004550320.1	KEGG: smd:Smed_2837 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004550321.1	KEGG: smd:Smed_2838 hypothetical protein
YP_004550322.1	KEGG: atu:Atu3321 hypothetical protein
YP_004550323.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: rle:RL0072 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like
YP_004550324.1	KEGG: rlt:Rleg2_3995 type I secretion membrane fusion protein, HlyD family; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004550325.1	KEGG: smd:Smed_2839 hypothetical protein
YP_004550326.1	KEGG: smd:Smed_2840 tetratricopeptide TPR_4
YP_004550327.1	KEGG: smd:Smed_2841 hypothetical protein
YP_004550328.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_2842 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004550329.1	KEGG: smd:Smed_2843 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004550330.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_2844 sugar isomerase (SIS)
YP_004550331.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_2845 ribokinase-like domain-containing protein
YP_004550332.1	KEGG: aba:Acid345_4435 hypothetical protein
YP_004550333.1	KEGG: aba:Acid345_4434 prevent-host-death protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004550334.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2846 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550335.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2847 hypothetical protein
YP_004550336.1	KEGG: smd:Smed_2848 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004550337.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_2849 FAD dependent oxidoreductase
YP_004550338.1	KEGG: smd:Smed_2850 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004550339.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_2851 xylose isomerase domain-containing protein
YP_004550340.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: smd:Smed_2852 glycerophosphoryl diester phosphodiesterase
YP_004550341.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2853 binding-protein-dependent transport systems inner membrane component
YP_004550342.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2854 binding-protein-dependent transport systems inner membrane component
YP_004550343.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_2855 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004550344.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_2856 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004550345.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_2857 extracellular solute-binding protein
YP_004550346.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_2858 DeoR family transcriptional regulator
YP_004550347.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2863 LysR family transcriptional regulator
YP_004550348.1	KEGG: smd:Smed_2864 putative periplasmic binding ABC transporter protein
YP_004550349.1	SMART: ATPase, AAA+ type, core; manually curated; KEGG: rhi:NGR_c30590 putative ATP-binding component of ABC transporter; PFAM: ABC transporter-like
YP_004550350.1	KEGG: smd:Smed_2866 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004550351.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2867 inner-membrane translocator
YP_004550352.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2868 inner-membrane translocator
YP_004550353.1	KEGG: smd:Smed_2869 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004550354.1	PFAM: Transposase, mutator type; KEGG: sjp:SJA_P2-00250 putative transposase
YP_004550355.1	TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: smd:Smed_2870 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain
YP_004550356.1	KEGG: smd:Smed_2871 mannose-6-phosphate isomerase; PFAM: N-acylglucosamine 2-epimerase
YP_004550357.1	KEGG: smd:Smed_2872 hypothetical protein; HAMAP: Uncharacterised protein family UPF0303; PFAM: Domain of unknown function DUF336
YP_004550358.1	PFAM: ROK; KEGG: smd:Smed_2873 ROK family protein
YP_004550359.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_5060 hemolysin-type calcium-binding region
YP_004550360.1	KEGG: rhi:NGR_c11550 hypothetical protein
YP_004550361.1	KEGG: bcj:BCAM0938 GNAT family acetyltransferase
YP_004550362.1	PFAM: Protein of unknown function DUF2091, periplasmic; Domain of unknown function DUF306, Meta/HslJ; KEGG: smd:Smed_2878 protein of unknown function DUF306 MetA and HslJ
YP_004550363.1	PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: smd:Smed_2879 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004550364.1	TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: smd:Smed_2880 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/classII
YP_004550365.1	KEGG: smd:Smed_2881 carbon-monoxide dehydrogenase (acceptor); PFAM: Molybdopterin dehydrogenase, FAD-binding
YP_004550366.1	KEGG: smd:Smed_2882 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004550367.1	KEGG: smd:Smed_2883 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004550368.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: smd:Smed_2884 17 kDa surface antigen
YP_004550369.1	KEGG: smd:Smed_2885 adenylyl cyclase class-3/4/guanylyl cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004550370.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2886 alpha/beta hydrolase fold
YP_004550371.1	PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: smd:Smed_2887 surface antigen (D15)
YP_004550372.1	PFAM: Protein of unknown function DUF490; KEGG: smd:Smed_2888 hypothetical protein
YP_004550373.1	KEGG: htu:Htur_1033 hypothetical protein
YP_004550374.1	PFAM: Aminoglycoside phosphotransferase; KEGG: mlo:mlr2696 kanamycin resistance protein
YP_004550375.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_2889 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004550376.1	KEGG: smd:Smed_2890 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004550377.1	TIGRFAM: Arginase, subgroup; KEGG: smd:Smed_2891 arginase; PFAM: Ureohydrolase
YP_004550378.1	KEGG: rhi:NGR_c30840 chemotaxis protein, CheW family; PFAM: CheW-like protein; SMART: CheW-like protein
YP_004550379.1	TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: smd:Smed_2893 methyl-accepting chemotaxis sensory transducer; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif
YP_004550380.1	KEGG: smd:Smed_2895 putative NAD-dependent formate dehydrogenase delta subunit protein
YP_004550381.1	KEGG: smd:Smed_2896 formate dehydrogenase accessory protein; TIGRFAM: Formate dehydrogenase, subunit FdhD; PFAM: Formate dehydrogenase, subunit FdhD
YP_004550382.1	TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain; KEGG: smd:Smed_2897 formate dehydrogenase, alpha subunit; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain
YP_004550383.1	KEGG: rec:RHECIAT_CH0001028 hypothetical protein
YP_004550384.1	PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; KEGG: smd:Smed_2898 NADH dehydrogenase (quinone); SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004550385.1	PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_2899 formate dehydrogenase subunit gamma
YP_004550386.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2900 LysR family transcriptional regulator
YP_004550387.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2901 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004550388.1	KEGG: smd:Smed_2902 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004550389.1	KEGG: smd:Smed_2903 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_004550390.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2904 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550391.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2905 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550392.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2906 binding-protein-dependent transport systems inner membrane component
YP_004550393.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c30980 putative permease component of ABC transporter
YP_004550394.1	PFAM: Protein of unknown function DUF2160, transmembrane; KEGG: smd:Smed_2908 hypothetical protein
YP_004550395.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2909 extracellular solute-binding protein
YP_004550396.1	KEGG: pap:PSPA7_2224 putative transporter; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease
YP_004550397.1	KEGG: smd:Smed_2911 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease
YP_004550398.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2912 hypothetical protein
YP_004550399.1	PFAM: Ferric-uptake regulator; KEGG: smd:Smed_2913 ferric uptake regulator family protein
YP_004550400.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: smd:Smed_2914 periplasmic solute binding protein
YP_004550401.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2915 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550402.1	PFAM: ABC-3; KEGG: smd:Smed_2916 ABC-3 protein
YP_004550403.1	PFAM: ABC-3; KEGG: smd:Smed_2917 ABC-3 protein
YP_004550404.1	KEGG: smd:Smed_2918 hypothetical protein
YP_004550405.1	KEGG: smd:Smed_2919 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; Helix-turn-helix, type 11; SMART: Transcription regulator AsnC-type
YP_004550406.1	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: smd:Smed_2920 saccharopine dehydrogenase
YP_004550407.1	TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: smd:Smed_2921 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal
YP_004550408.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: smd:Smed_2922 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004550409.1	TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; KEGG: smd:Smed_2923 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit
YP_004550410.1	TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: rhi:NGR_c31130 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004550411.1	TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: smd:Smed_2925 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit
YP_004550412.1	KEGG: smd:Smed_2926 hypothetical protein
YP_004550413.1	TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: smd:Smed_2927 primosome assembly protein PriA; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004550414.1	TIGRFAM: Transaldolase 3A/3B; HAMAP: Transaldolase 3B, putative; KEGG: smd:Smed_2928 putative translaldolase; PFAM: Transaldolase
YP_004550415.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_2929 hypothetical protein
YP_004550416.1	KEGG: dsh:Dshi_1060 hypothetical protein
YP_004550417.1	KEGG: smd:Smed_2930 hypothetical protein
YP_004550418.1	KEGG: smd:Smed_2931 hypothetical protein
YP_004550419.1	KEGG: smd:Smed_2932 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004550420.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: smd:Smed_2933 site-specific tyrosine recombinase XerC
YP_004550421.1	PFAM: GumN predicted; KEGG: smd:Smed_2934 GumN family protein
YP_004550422.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: smd:Smed_2936 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004550423.1	KEGG: smd:Smed_2937 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004550424.1	KEGG: smd:Smed_2938 putative signal peptide protein
YP_004550425.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_2939 lysine exporter protein LysE/YggA
YP_004550426.1	TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: smd:Smed_2940 dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004550427.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: smd:Smed_2941 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component
YP_004550428.1	SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: smd:Smed_2942 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding
YP_004550429.1	PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; KEGG: smd:Smed_2943 succinyl-CoA synthetase subunit beta
YP_004550430.1	TIGRFAM: Malate dehydrogenase, NAD-dependent; HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: smd:Smed_2944 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal
YP_004550431.1	PFAM: ATPase, AFG1-like; KEGG: smd:Smed_2945 AFG1 family ATPase
YP_004550432.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: jde:Jden_0768 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3
YP_004550433.1	KEGG: syn:ssr5020 hypothetical protein; manually curated; PFAM: Plasmid maintenance system killer
YP_004550434.1	KEGG: smd:Smed_2946 outer membrane lipoprotein omp19
YP_004550435.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_2947 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550436.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2948 binding-protein-dependent transport systems inner membrane component
YP_004550437.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2949 binding-protein-dependent transport systems inner membrane component
YP_004550438.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2950 extracellular solute-binding protein
YP_004550439.1	PFAM: ROK; HTH transcriptional regulator, MarR; KEGG: smd:Smed_2951 ROK family protein
YP_004550440.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_2952 oxidoreductase domain-containing protein
YP_004550441.1	KEGG: smd:Smed_2953 hypothetical protein
YP_004550442.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_2955 peptide methionine sulfoxide reductase
YP_004550443.1	KEGG: smd:Smed_2956 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein
YP_004550444.1	TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: smd:Smed_2957 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004550445.1	KEGG: smd:Smed_2958 succinate dehydrogenase hydrophobic membrane anchor; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit
YP_004550446.1	KEGG: smd:Smed_2959 succinate dehydrogenase cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit
YP_004550447.1	KEGG: smd:Smed_2960 hypothetical protein
YP_004550448.1	PFAM: Ribosomal L11 methyltransferase, PrmA; KEGG: smd:Smed_2961 hypothetical protein
YP_004550449.1	PFAM: Protein of unknown function DUF55; KEGG: rhi:NGR_c32150 hypothetical protein
YP_004550450.1	PFAM: YCII-related; KEGG: smd:Smed_2963 YciI-like protein
YP_004550451.1	KEGG: smd:Smed_2964 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
YP_004550452.1	PFAM: Peptidase M22, glycoprotease; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; KEGG: rhi:NGR_c32120 putative DNA-binding/iron metalloprotein/AP endonuclease
YP_004550453.1	TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: smd:Smed_2966 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain
YP_004550454.1	PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: smd:Smed_2967 uroporphyrinogen-III synthase
YP_004550455.1	KEGG: smd:Smed_2968 hypothetical protein
YP_004550456.1	PFAM: HemY, N-terminal; KEGG: smd:Smed_2969 HemY domain-containing protein
YP_004550457.1	KEGG: smd:Smed_2970 hypothetical protein
YP_004550458.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: smd:Smed_2971 glutamine amidotransferase
YP_004550460.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_2972 major facilitator transporter
YP_004550461.1	PFAM: Uncharacterised protein family Ycf19; KEGG: smd:Smed_2973 protein of unknown function YGGT
YP_004550462.1	HAMAP: Inorganic pyrophosphatase; KEGG: smd:Smed_2974 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_004550463.1	KEGG: mes:Meso_3231 hypothetical protein
YP_004550464.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_2975 GCN5-related N-acetyltransferase
YP_004550465.1	TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: smd:Smed_2976 GTP-binding protein TypA; SMART: Translation elongation factor EFG/EF2, C-terminal
YP_004550466.1	PFAM: Alkaline phosphatase D-related; KEGG: smd:Smed_2977 alkaline phosphatase
YP_004550467.1	KEGG: sti:Sthe_3473 hypothetical protein
YP_004550468.1	PFAM: Amidase; KEGG: smd:Smed_2984 amidase
YP_004550469.1	KEGG: smd:Smed_2985 hypothetical protein
YP_004550470.1	KEGG: smd:Smed_2986 hypothetical protein
YP_004550471.1	KEGG: rle:RL1103 hypothetical protein
YP_004550472.1	TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: rhi:NGR_c31660 50S ribosomal protein L21; PFAM: Ribosomal protein L21
YP_004550473.1	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: rhi:NGR_c31670 50S ribosomal protein L27; PFAM: Ribosomal protein L27
YP_004550474.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rhi:NGR_c31680 acetyltransferase
YP_004550475.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3008 GCN5-related N-acetyltransferase
YP_004550476.1	TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; HAMAP: GTP-binding protein Obg/CgtA; KEGG: smd:Smed_3009 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related
YP_004550477.1	SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: smd:Smed_3010 gamma-glutamyl kinase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase
YP_004550478.1	TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: smd:Smed_3011 gamma-glutamyl phosphate reductase
YP_004550479.1	PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: smd:Smed_3012 nicotinic acid mononucleotide adenylyltransferase
YP_004550480.1	KEGG: smd:Smed_3013 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like
YP_004550481.1	KEGG: smd:Smed_3014 rRNA large subunit methyltransferase; HAMAP: SPOUT methyltransferase, predicted; PFAM: SPOUT methyltransferase, predicted
YP_004550482.1	PFAM: Peptidase M23; KEGG: smd:Smed_3015 peptidase M23B
YP_004550483.1	TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: smd:Smed_3016 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF
YP_004550484.1	PFAM: Protein of unknown function DUF610, YibQ; KEGG: smd:Smed_3017 protein of unknown function DUF610 YibQ
YP_004550485.1	KEGG: smd:Smed_3018 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase RppH; PFAM: NUDIX hydrolase domain
YP_004550486.1	manually curated; TIGRFAM: Bacterioferritin; KEGG: smd:Smed_3019 bacterioferritin; PFAM: Ferritin/Dps protein
YP_004550487.1	KEGG: smd:Smed_3020 hypothetical protein
YP_004550488.1	KEGG: smd:Smed_3021 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: DNA polymerase, error-prone; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004550489.1	PFAM: DNA-repair protein, UmuC-like; KEGG: smd:Smed_3022 hypothetical protein
YP_004550490.1	KEGG: smd:Smed_3023 hypothetical protein
YP_004550491.1	PFAM: Protein of unknown function DUF1025; KEGG: smd:Smed_3024 hypothetical protein
YP_004550492.1	PFAM: Domain of unknown function DUF1737; KEGG: smd:Smed_3025 hypothetical protein
YP_004550493.1	KEGG: smd:Smed_3026 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain
YP_004550494.1	KEGG: smd:Smed_3027 hypothetical protein
YP_004550495.1	KEGG: smd:Smed_3028 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004550496.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3029 endoribonuclease L-PSP
YP_004550497.1	PFAM: Homoserine O-succinyltransferase; TIGRFAM: Homoserine O-succinyltransferase; HAMAP: Homoserine O-succinyltransferase; KEGG: smd:Smed_3030 homoserine O-succinyltransferase
YP_004550498.1	KEGG: smd:Smed_3031 aldose 1-epimerase; PFAM: Aldose 1-epimerase
YP_004550499.1	KEGG: bbt:BBta_2276 putative CobW protein involved in cobalamin synthesis; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004550500.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: smd:Smed_3044 YbaK/prolyl-tRNA synthetase associated region
YP_004550501.1	KEGG: smd:Smed_3045 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004550502.1	KEGG: smd:Smed_3046 peptidase S16 lon domain-containing protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal
YP_004550503.1	KEGG: smd:Smed_3047 hypothetical protein; HAMAP: Uncharacterised protein family UPF0434/Trm112; PFAM: Uncharacterised protein family UPF0434/Trm112
YP_004550504.1	KEGG: smd:Smed_3048 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase
YP_004550505.1	TIGRFAM: Acyl-CoA thioesterase; KEGG: smd:Smed_3049 acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase
YP_004550506.1	KEGG: ara:Arad_4452 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_004550507.1	KEGG: smd:Smed_3051 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_004550508.1	KEGG: smd:Smed_3052 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core
YP_004550509.1	PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: smd:Smed_3053 outer membrane lipoprotein carrier protein LolA
YP_004550510.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rle:pRL120032 hypothetical protein
YP_004550511.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: rlg:Rleg_5223 xylose isomerase domain protein TIM barrel
YP_004550512.1	KEGG: rlg:Rleg_5222 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal
YP_004550513.1	KEGG: bge:BC1002_5894 periplasmic sugar-binding protein of sugar ABC transporter
YP_004550514.1	PFAM: ABC transporter permease; KEGG: rlt:Rleg2_2942 monosaccharide-transporting ATPase
YP_004550515.1	PFAM: ABC transporter-like; KEGG: rec:RHECIAT_CH0003431 probable sugar ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004550516.1	PFAM: ROK; Transcription regulator TrmB, N-terminal; KEGG: ara:Arad_12395 transcription regulator protein
YP_004550517.1	PFAM: ROK; KEGG: mrb:Mrub_1270 ROK family protein
YP_004550518.1	KEGG: smd:Smed_3054 exodeoxyribonuclease III; TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_004550519.1	KEGG: smd:Smed_3055 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_004550520.1	KEGG: smd:Smed_3056 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004550521.1	KEGG: smd:Smed_3057 hypothetical protein
YP_004550522.1	KEGG: rhi:NGR_c31410 putative phosphohistidine phosphatase protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004550523.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: smd:Smed_3059 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
YP_004550524.1	KEGG: smd:Smed_3060 hypothetical protein
YP_004550525.1	KEGG: smd:Smed_3061 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550526.1	KEGG: smd:Smed_3062 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004550527.1	PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: smd:Smed_3063 argininosuccinate synthase
YP_004550528.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rhi:NGR_c32530 lysine exporter protein
YP_004550529.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3065 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550530.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3066 inner-membrane translocator
YP_004550531.1	PFAM: ABC transporter substrate binding protein; KEGG: smd:Smed_3067 hypothetical protein
YP_004550532.1	TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: smd:Smed_3068 radical SAM protein; PFAM: Radical SAM
YP_004550533.1	KEGG: smd:Smed_3069 putative signal peptide protein
YP_004550534.1	PFAM: Protein of unknown function DUF1232; KEGG: smd:Smed_3070 hypothetical protein
YP_004550535.1	KEGG: smd:Smed_3071 pterin-4-alpha-carbinolamine dehydratase; HAMAP: Transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase
YP_004550536.1	KEGG: smd:Smed_3072 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX
YP_004550537.1	KEGG: smd:Smed_3073 GDSL family lipase; PFAM: Lipase, GDSL
YP_004550538.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3074 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550539.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: smd:Smed_3075 hypothetical protein
YP_004550540.1	PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: smd:Smed_3076 hypothetical protein
YP_004550541.1	KEGG: smd:Smed_3077 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004550542.1	HAMAP: Peptidase S14, ClpP; KEGG: smd:Smed_3078 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP
YP_004550543.1	KEGG: smd:Smed_3079 hypothetical protein
YP_004550544.1	KEGG: smd:Smed_3080 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004550545.1	KEGG: smd:Smed_3081 hypothetical protein
YP_004550546.1	PFAM: Protein of unknown function DUF1223; KEGG: smd:Smed_3082 hypothetical protein
YP_004550547.1	TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: smd:Smed_3083 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004550548.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: smd:Smed_3084 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like
YP_004550549.1	KEGG: smd:Smed_3085 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB
YP_004550550.1	KEGG: smd:Smed_3086 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein
YP_004550551.1	KEGG: smd:Smed_3087 heme exporter protein D (CcmD); TIGRFAM: Haem exporter protein D (CcmD); PFAM: Haem exporter protein D (CcmD)
YP_004550552.1	KEGG: smd:Smed_3088 periplasmic protein thiol--disulphide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin
YP_004550553.1	KEGG: smd:Smed_3089 hypothetical protein; HAMAP: Protein of unknown function DUF2585; PFAM: Protein of unknown function DUF2585
YP_004550554.1	TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: smd:Smed_3090 intracellular septation protein A; PFAM: Intracellular septation protein A
YP_004550555.1	TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: smd:Smed_3091 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_004550556.1	TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: smd:Smed_3092 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB
YP_004550557.1	TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: rhi:NGR_c32280 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase
YP_004550558.1	TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: smd:Smed_3095 signal recognition particle protein; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_004550559.1	TIGRFAM: Chorismate mutase, bacteria; PFAM: Chorismate mutase, type II; KEGG: smd:Smed_3096 chorismate mutase; SMART: Chorismate mutase
YP_004550560.1	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: smd:Smed_3097 30S ribosomal protein S16; PFAM: Ribosomal protein S16
YP_004550561.1	TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: smd:Smed_3098 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel
YP_004550562.1	PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: smd:Smed_3099 tRNA (guanine-N(1)-)-methyltransferase
YP_004550563.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_3100 hypothetical protein
YP_004550564.1	TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: smd:Smed_3101 50S ribosomal protein L19; PFAM: Ribosomal protein L19
YP_004550565.1	KEGG: smd:Smed_3102 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor
YP_004550566.1	KEGG: smd:Smed_3103 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004550567.1	KEGG: smd:Smed_3104 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004550568.1	KEGG: smd:Smed_3105 thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain
YP_004550569.1	KEGG: smd:Smed_3106 hypothetical protein
YP_004550570.1	KEGG: rhi:NGR_c32610 thiamine transporter substrate binding subunit; TIGRFAM: Proteobacterial thiamine ABC transporter, periplasmic binding protein; Thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004550571.1	KEGG: smd:Smed_3108 thiamine transporter membrane protein; TIGRFAM: Thiamine ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004550572.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, thiamine, ATP-binding protein; KEGG: smd:Smed_3109 ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004550573.1	PFAM: Peptidase M48; KEGG: smd:Smed_3110 peptidase M48 Ste24p
YP_004550574.1	KEGG: smd:Smed_3111 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004550575.1	PFAM: Transcription factor CarD; KEGG: smd:Smed_3112 CarD family transcriptional regulator
YP_004550576.1	PFAM: 4Fe-4S binding domain; KEGG: smd:Smed_3113 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004550577.1	KEGG: smd:Smed_3114 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4
YP_004550578.1	KEGG: smd:Smed_3115 helicase domain-containing protein; PFAM: Helicase, C-terminal; SMART: Helicase, C-terminal
YP_004550579.1	SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: smd:Smed_3116 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004550580.1	TIGRFAM: Thiolase; KEGG: smd:Smed_3117 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004550581.1	KEGG: smd:Smed_3118 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory
YP_004550582.1	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: smd:Smed_3119 50S ribosomal protein L32; PFAM: Ribosomal protein L32p
YP_004550583.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: rhi:NGR_c32750 glutathione S-transferase domain protein
YP_004550584.1	TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: smd:Smed_3121 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51
YP_004550585.1	KEGG: smd:Smed_3122 polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004550586.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: rhi:NGR_c32780 histidinol-phosphate aminotransferase
YP_004550587.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_4691 amino acid efflux protein
YP_004550588.1	KEGG: smd:Smed_3133 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
YP_004550589.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3134 major facilitator transporter
YP_004550590.1	KEGG: smd:Smed_3135 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004550591.1	KEGG: smd:Smed_3136 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004550592.1	KEGG: smd:Smed_3137 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004550593.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3138 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550594.1	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Pyruvate carboxylase; KEGG: smd:Smed_3139 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Pyruvate carboxyltransferase; Biotin/lipoyl attachment
YP_004550595.1	KEGG: smd:Smed_3140 regulatory protein LuxR; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004550596.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glucan exporter ATP-binding protein; KEGG: smd:Smed_3142 cyclic beta-1,2-glucan ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004550597.1	KEGG: rpc:RPC_2933 hypothetical protein
YP_004550598.1	PFAM: Uncharacterised conserved protein UCP028704, OpgC; KEGG: smd:Smed_3154 hypothetical protein
YP_004550599.1	PFAM: Protein of unknown function DUF2329; Glycosyltransferase 36 associated; Glycosyltransferase 36; Putative carbohydrate binding; Protein of unknown function DUF3131; KEGG: smd:Smed_3155 glycosyltransferase 36
YP_004550600.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3156 LysR family transcriptional regulator
YP_004550601.1	PFAM: Protein of unknown function DUF1338; KEGG: smd:Smed_3157 hypothetical protein
YP_004550602.1	KEGG: smd:Smed_3158 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal
YP_004550603.1	KEGG: smd:Smed_3159 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004550604.1	KEGG: smd:Smed_3160 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_004550605.1	KEGG: smd:Smed_3161 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004550606.1	KEGG: smd:Smed_3162 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III
YP_004550607.1	KEGG: smd:Smed_3163 hydroxypyruvate reductase; PFAM: MOFRL domain
YP_004550608.1	KEGG: smd:Smed_3164 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004550609.1	KEGG: smd:Smed_3165 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004550610.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3167 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550611.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3168 binding-protein-dependent transport systems inner membrane component
YP_004550612.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3169 binding-protein-dependent transport systems inner membrane component
YP_004550613.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3170 extracellular solute-binding protein
YP_004550614.1	KEGG: smd:Smed_3171 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004550615.1	PFAM: Crotonase, core; KEGG: smd:Smed_3172 enoyl-CoA hydratase/isomerase
YP_004550616.1	KEGG: smd:Smed_3173 coenzyme A transferase; PFAM: Coenzyme A transferase; SMART: Coenzyme A transferase
YP_004550617.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3174 oxidoreductase domain-containing protein
YP_004550618.1	KEGG: smd:Smed_3175 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004550619.1	PFAM: Protein of unknown function DUF993; KEGG: smd:Smed_3176 hypothetical protein
YP_004550620.1	KEGG: smd:Smed_3177 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F
YP_004550621.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rhi:NGR_c33170 putative LysE type translocator
YP_004550622.1	PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: rhi:NGR_c33180 3-isopropylmalate dehydrogenase
YP_004550623.1	KEGG: smd:Smed_3179 phosphoesterase PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004550624.1	PFAM: General substrate transporter; KEGG: smd:Smed_3180 major facilitator transporter
YP_004550625.1	PFAM: PilT protein, N-terminal; KEGG: rhi:NGR_b10440 putative PIN domain signalling protein
YP_004550626.1	KEGG: rhi:NGR_b10450 putative virulence-associated protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_004550627.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: smd:Smed_3182 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_004550628.1	TIGRFAM: Lytic murein transglycosylase; KEGG: smd:Smed_3183 lytic murein transglycosylase
YP_004550629.1	PFAM: Carbonic anhydrase; KEGG: smd:Smed_3185 carbonate dehydratase; SMART: Carbonic anhydrase
YP_004550630.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: smd:Smed_3186 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_004550631.1	PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: smd:Smed_3187 NAD-glutamate dehydrogenase
YP_004550632.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3188 major facilitator transporter
YP_004550633.1	KEGG: smd:Smed_3189 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain
YP_004550634.1	PFAM: Heparinase II/III-like; KEGG: smd:Smed_3190 heparinase II/III family protein
YP_004550635.1	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: smd:Smed_3191 Fmu (Sun) domain-containing protein
YP_004550636.1	KEGG: smd:Smed_3192 heat shock protein HtpX; HAMAP: Peptidase M48, protease HtpX, putative; PFAM: Peptidase M48
YP_004550637.1	PFAM: Protein of unknown function DUF1674; KEGG: smd:Smed_3193 hypothetical protein
YP_004550638.1	PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate-CoA ligase; HAMAP: Acetate-CoA ligase; KEGG: smd:Smed_3194 acetyl-CoA synthetase
YP_004550639.1	PFAM: Protein of unknown function DUF1013; KEGG: smd:Smed_3195 hypothetical protein
YP_004550640.1	KEGG: smd:Smed_3196 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004550641.1	KEGG: smd:Smed_3197 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal
YP_004550642.1	KEGG: smd:Smed_3198 leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial
YP_004550643.1	PFAM: Protein of unknown function DUF2159, secreted; KEGG: smd:Smed_3199 hypothetical protein
YP_004550644.1	KEGG: smd:Smed_3200 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta
YP_004550645.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; Transcriptional repressor protein, KorB; KEGG: smd:Smed_3201 ParB-like partition protein; SMART: ParB-like nuclease
YP_004550646.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_3202 cobyrinic acid ac-diamide synthase
YP_004550647.1	TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: smd:Smed_3203 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G
YP_004550648.1	KEGG: smd:Smed_3204 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related
YP_004550649.1	TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: smd:Smed_3205 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related
YP_004550650.1	TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: smd:Smed_3206 transcription termination factor Rho; SMART: Rho termination factor, N-terminal; Cold shock protein; ATPase, AAA+ type, core
YP_004550651.1	KEGG: smd:Smed_3207 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093
YP_004550652.1	PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: smd:Smed_3208 uroporphyrinogen decarboxylase
YP_004550653.1	KEGG: smd:Smed_3209 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted
YP_004550654.1	KEGG: smd:Smed_3210 Maf-like protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein
YP_004550655.1	KEGG: smd:Smed_3211 shikimate 5-dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
YP_004550656.1	PFAM: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: smd:Smed_3212 dephospho-CoA kinase
YP_004550657.1	SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: smd:Smed_3213 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III
YP_004550658.1	TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: smd:Smed_3214 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB
YP_004550659.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: smd:Smed_3215 FxsA cytoplasmic membrane protein
YP_004550660.1	KEGG: smd:Smed_3216 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45
YP_004550661.1	KEGG: smd:Smed_3217 MltA domain-containing protein; PFAM: Lytic transglycosylase MltA; 3D; SMART: Lytic transglycosylase MltA
YP_004550662.1	KEGG: smd:Smed_3218 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal
YP_004550663.1	KEGG: smd:Smed_3219 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004550664.1	SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: smd:Smed_3220 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal
YP_004550665.1	PFAM: Nitroreductase-like; KEGG: smd:Smed_3221 nitroreductase
YP_004550666.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_3222 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004550667.1	KEGG: smd:Smed_3223 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain
YP_004550668.1	KEGG: smd:Smed_3224 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal
YP_004550669.1	PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: smd:Smed_3225 altronate dehydratase; SMART: SAF domain
YP_004550670.1	KEGG: smd:Smed_3226 pyridoxal 4-dehydrogenase; PFAM: NADP-dependent oxidoreductase domain
YP_004550671.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator
YP_004550672.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3228 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550673.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c33700 putative sugar ABC transporter, permease protein
YP_004550674.1	KEGG: smd:Smed_3230 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004550675.1	KEGG: smd:Smed_3233 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal
YP_004550676.1	KEGG: smd:Smed_3234 hypothetical protein
YP_004550677.1	KEGG: smd:Smed_3235 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF45
YP_004550678.1	KEGG: smd:Smed_3236 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
YP_004550679.1	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: smd:Smed_3237 tryptophan synthase subunit beta
YP_004550680.1	PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: smd:Smed_3238 tryptophan synthase subunit alpha
YP_004550681.1	PFAM: Carboxyl transferase; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: smd:Smed_3239 acetyl-CoA carboxylase subunit beta
YP_004550682.1	TIGRFAM: Folylpolyglutamate synthetase; KEGG: smd:Smed_3240 FolC bifunctional protein; PFAM: Mur ligase, central
YP_004550683.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_004550684.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004550685.1	KEGG: smd:Smed_3242 double-strand break repair helicase AddA; TIGRFAM: DNA helicase (double-strand break repair), AddA type; PFAM: DNA helicase, UvrD/REP type
YP_004550686.1	TIGRFAM: Double-strand break repair protein AddB; KEGG: smd:Smed_3243 double-strand break repair protein AddB
YP_004550687.1	PFAM: Nucleotidyl transferase; KEGG: smd:Smed_3244 nucleotidyl transferase
YP_004550688.1	KEGG: smd:Smed_3245 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Aminoglycoside phosphotransferase; Uncharacterised protein family UPF0079, ATPase bacteria
YP_004550689.1	KEGG: smd:Smed_3246 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004550690.1	PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: Adenosylhomocysteinase; HAMAP: Adenosylhomocysteinase; KEGG: smd:Smed_3247 S-adenosyl-L-homocysteine hydrolase
YP_004550691.1	KEGG: rhi:NGR_c33890 putative phosphotransferase system, phosphocarrier HPr protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein
YP_004550692.1	PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: smd:Smed_3249 PTS system fructose subfamily IIA component
YP_004550693.1	KEGG: smd:Smed_3250 HPr kinase
YP_004550694.1	KEGG: smd:Smed_3251 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004550695.1	KEGG: smd:Smed_3252 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004550696.1	TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: Phosphoenolpyruvate carboxykinase, ATP-utilising; KEGG: smd:Smed_3253 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising
YP_004550697.1	PFAM: Peptide chain release factor class I/class II; KEGG: smd:Smed_3254 peptidyl-tRNA hydrolase domain protein
YP_004550698.1	KEGG: smd:Smed_3255 LysM domain/BON superfamily protein; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; Transport-associated and nodulation domain, bacteria
YP_004550699.1	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: smd:Smed_3256 2OG-Fe(II) oxygenase
YP_004550700.1	TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: smd:Smed_3257 pantothenate kinase
YP_004550701.1	TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; KEGG: smd:Smed_3258 phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like
YP_004550702.1	PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Histidine biosynthesis, HisF; KEGG: smd:Smed_3259 imidazole glycerol phosphate synthase subunit HisF
YP_004550703.1	PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: smd:Smed_3260 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
YP_004550704.1	TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: smd:Smed_3261 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_004550705.1	KEGG: smd:Smed_3262 hypothetical protein
YP_004550706.1	HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: rhi:NGR_c34040 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_004550707.1	TIGRFAM: ATP-dependent protease, HslV subunit; HAMAP: ATP-dependent protease, HslV subunit; KEGG: rhi:NGR_c34050 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta
YP_004550708.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3265 GCN5-related N-acetyltransferase
YP_004550709.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: smd:Smed_3266 ATP-dependent protease ATP-binding subunit HslU; HAMAP: Heat shock protein HslU; PFAM: ATPase, AAA-2
YP_004550710.1	PFAM: Protein of unknown function DUF1402; KEGG: smd:Smed_3267 hypothetical protein
YP_004550711.1	KEGG: smd:Smed_3268 cytochrome P450; PFAM: Cytochrome P450
YP_004550712.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: smd:Smed_3269 hydantoinase/oxoprolinase
YP_004550713.1	TIGRFAM: Malate synthase G; KEGG: smd:Smed_3270 malate synthase G; PFAM: Malate synthase
YP_004550714.1	PFAM: YkuD domain; KEGG: smd:Smed_3271 ErfK/YbiS/YcfS/YnhG family protein
YP_004550715.1	PFAM: Protein of unknown function DUF1052; KEGG: smd:Smed_3272 hypothetical protein
YP_004550716.1	KEGG: smd:Smed_3273 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004550717.1	KEGG: smd:Smed_3274 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004550718.1	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase-associated domain; KEGG: smd:Smed_3275 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain
YP_004550719.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3276 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550720.1	KEGG: smd:Smed_3277 putative permease ABC transporter protein
YP_004550721.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3278 putative ABC transporter solute-binding protein
YP_004550722.1	KEGG: smd:Smed_6303 hypothetical protein
YP_004550723.1	KEGG: smd:Smed_6304 hypothetical protein
YP_004550724.1	KEGG: smd:Smed_6305 hypothetical protein
YP_004550725.1	KEGG: smd:Smed_5372 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_004550726.1	KEGG: swi:Swit_3154 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004550727.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: swi:Swit_3159 LysR family transcriptional regulator
YP_004550728.1	PFAM: Cupin 2, conserved barrel; KEGG: rde:RD1_0099 hypothetical protein
YP_004550729.1	KEGG: smd:Smed_5364 HPP family protein?; PFAM: HPP; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004550730.1	KEGG: smd:Smed_5365 hypothetical protein
YP_004550731.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: ret:RHE_CH00694 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004550732.1	PFAM: Sarcosine oxidase, gamma subunit; KEGG: rhi:NGR_c14330 sarcosine oxidase, gamma subunit
YP_004550733.1	KEGG: smd:Smed_3287 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: Glycine cleavage T-protein, N-terminal; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; Glycine cleavage T-protein, C-terminal barrel
YP_004550734.1	TIGRFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: smd:Smed_3288 sarcosine oxidase delta subunit family protein; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric
YP_004550735.1	TIGRFAM: Sarcosine oxidase, beta subunit, heterotetrameric; KEGG: smd:Smed_3289 sarcosine oxidase beta subunit family protein; PFAM: FAD dependent oxidoreductase
YP_004550736.1	KEGG: smd:Smed_3290 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004550737.1	PFAM: Glutamine amidotransferase, class-II; KEGG: smd:Smed_3291 glutamine amidotransferase class-II
YP_004550738.1	PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: smd:Smed_3292 glutamate synthase alpha subunit
YP_004550739.1	KEGG: smd:Smed_3293 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C
YP_004550740.1	TIGRFAM: Glutamine synthetase, type III; KEGG: smd:Smed_3294 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain
YP_004550741.1	KEGG: smd:Smed_3295 hypothetical protein
YP_004550742.1	KEGG: smd:Smed_3296 putative signal peptide protein
YP_004550743.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_3297 amino acid permease-associated region
YP_004550744.1	KEGG: smd:Smed_3298 hypothetical protein
YP_004550745.1	KEGG: smd:Smed_3299 hypothetical protein
YP_004550746.1	KEGG: smd:Smed_3300 hypothetical protein
YP_004550747.1	KEGG: smd:Smed_3301 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004550748.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: smd:Smed_3310 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_004550749.1	KEGG: smd:Smed_3311 glycine cleavage T protein (aminomethyl transferase); PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004550750.1	KEGG: smd:Smed_3312 hypothetical protein
YP_004550751.1	KEGG: smd:Smed_3313 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain
YP_004550752.1	KEGG: smd:Smed_3314 hypothetical protein
YP_004550753.1	PFAM: Flavin-containing monooxygenase-like; KEGG: smd:Smed_3315 flavin-containing monooxygenase FMO
YP_004550754.1	KEGG: smd:Smed_3316 glycine cleavage T protein (aminomethyl transferase); PFAM: Glycine cleavage T-protein, N-terminal; Domain of unknown function DUF1989; Glycine cleavage T-protein, C-terminal barrel
YP_004550755.1	PFAM: Amino acid permease domain; KEGG: smd:Smed_3317 amino acid permease-associated region
YP_004550756.1	KEGG: rle:RL0066 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase
YP_004550757.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3319 NAD-dependent epimerase/dehydratase
YP_004550758.1	KEGG: smd:Smed_3320 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004550759.1	KEGG: smd:Smed_3321 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004550760.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: smd:Smed_3322 SMP-30/gluconolaconase/LRE domain-containing protein
YP_004550761.1	PFAM: Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3323 glutathione S-transferase domain-containing protein
YP_004550762.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3324 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550763.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3325 oxidoreductase domain-containing protein
YP_004550764.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3326 oxidoreductase domain-containing protein
YP_004550765.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component
YP_004550766.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component
YP_004550767.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3329 extracellular solute-binding protein
YP_004550768.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3330 TetR family transcriptional regulator
YP_004550769.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3331 oxidoreductase domain-containing protein
YP_004550770.1	PFAM: Protein of unknown function DUF993; KEGG: rhi:NGR_b17960 hypothetical protein
YP_004550771.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_3333 hypothetical protein
YP_004550772.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3334 xylose isomerase domain-containing protein
YP_004550773.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3335 oxidoreductase domain-containing protein
YP_004550774.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: smd:Smed_3336 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004550775.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3337 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550776.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3338 inner-membrane translocator
YP_004550777.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3339 inner-membrane translocator
YP_004550778.1	KEGG: smd:Smed_3340 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding
YP_004550779.1	TIGRFAM: Putative purine nucleotide phosphorylase; Inosine guanosine/xanthosine phosphorylase; KEGG: smd:Smed_3341 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase domain
YP_004550780.1	KEGG: smd:Smed_3342 thymidine phosphorylase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal; TIGRFAM: Thymidine phosphorylase; Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; HAMAP: Thymidine phosphorylase; SMART: Pyrimidine nucleoside phosphorylase, C-terminal
YP_004550781.1	KEGG: smd:Smed_3343 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase
YP_004550782.1	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: rhi:NGR_c34590 adenosine deaminase
YP_004550783.1	PFAM: Metalloenzyme; TIGRFAM: Phosphopentomutase; HAMAP: Phosphopentomutase; KEGG: smd:Smed_3345 phosphopentomutase
YP_004550784.1	KEGG: smd:Smed_3346 hypothetical protein
YP_004550785.1	PFAM: TadE-like; KEGG: smd:Smed_3347 TadE family protein
YP_004550786.1	KEGG: smd:Smed_3348 hypothetical protein
YP_004550787.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_3349 Flp/Fap pilin component
YP_004550788.1	PFAM: Peptidase A24A, prepilin type IV; KEGG: smd:Smed_3350 peptidase A24A prepilin type IV
YP_004550789.1	TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: smd:Smed_3351 SAF domain-containing protein; SMART: SAF domain
YP_004550790.1	PFAM: Type II/III secretion system; Transport-associated; KEGG: smd:Smed_3352 type II and III secretion system protein
YP_004550791.1	KEGG: smd:Smed_3353 pilus biogenesis lipoprotein CpaD; TIGRFAM: Pilus biogenesis CpaD; PFAM: Pilus biogenesis CpaD-related
YP_004550792.1	KEGG: smd:Smed_3354 response regulator receiver protein
YP_004550793.1	PFAM: Type II secretion system protein E; KEGG: smd:Smed_3355 type II secretion system protein E
YP_004550794.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_3356 type II secretion system protein
YP_004550795.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_3357 type II secretion system protein
YP_004550796.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_004550797.1	KEGG: smd:Smed_3358 tetratricopeptide TPR_4
YP_004550798.1	PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: smd:Smed_3359 leucyl aminopeptidase
YP_004550799.1	KEGG: rhi:NGR_c34760 putative transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550800.1	PFAM: NLP/P60; KEGG: smd:Smed_3361 NLP/P60 protein
YP_004550801.1	KEGG: smd:Smed_3362 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_004550802.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3363 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550803.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3364 binding-protein-dependent transport systems inner membrane component
YP_004550804.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3365 binding-protein-dependent transport systems inner membrane component
YP_004550805.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3366 extracellular solute-binding protein
YP_004550806.1	PFAM: Peptidase M74, penicillin-insensitive murein endopeptidase; KEGG: smd:Smed_3367 penicillin-insensitive murein endopeptidase
YP_004550807.1	KEGG: smd:Smed_3368 methylglyoxal synthase; PFAM: Methylglyoxal synthase-like domain; TIGRFAM: Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; SMART: Methylglyoxal synthase-like domain
YP_004550808.1	PFAM: Glucokinase; TIGRFAM: Glucokinase; HAMAP: Glucokinase; KEGG: smd:Smed_3369 glucokinase
YP_004550809.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_3370 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550810.1	PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; KEGG: smd:Smed_3371 dihydrodipicolinate reductase
YP_004550811.1	KEGG: smd:Smed_3372 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; SMART: Histidine phosphatase superfamily, clade-1
YP_004550812.1	TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; HTH transcriptional regulator, AraC; KEGG: smd:Smed_3373 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004550813.1	PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: smd:Smed_3374 hypothetical protein
YP_004550814.1	SMART: HhH-GPD domain; TIGRFAM: Endonuclease III/Nth; KEGG: rhi:NGR_c34920 putative endonuclease III protein; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif
YP_004550815.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3376 TetR family transcriptional regulator
YP_004550816.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c34940 putative glyoxalase/bleomycin resistance protein/dioxygenase
YP_004550817.1	KEGG: smd:Smed_3378 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004550818.1	PFAM: Shikimate kinase; KEGG: rlt:Rleg2_1977 hypothetical protein
YP_004550819.1	KEGG: smd:Smed_3379 hypothetical protein; PFAM: Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial
YP_004550820.1	KEGG: smd:Smed_3380 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004550821.1	TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 3'-5' exonuclease; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; KEGG: smd:Smed_3381 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; DNA-directed DNA polymerase, family A, palm domain; Helix-hairpin-helix DNA-binding motif, class 1; 3'-5' exonuclease; Helix-hairpin-helix motif, class 2
YP_004550822.1	KEGG: smd:Smed_3382 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550823.1	KEGG: smd:Smed_3383 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004550824.1	KEGG: smd:Smed_3384 hypothetical protein
YP_004550825.1	KEGG: smd:Smed_3385 putative signal peptide protein
YP_004550826.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3386 hypothetical protein
YP_004550827.1	KEGG: smd:Smed_3388 1A family penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004550828.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: smd:Smed_3389 molecular chaperone DnaK; PFAM: Heat shock protein 70
YP_004550829.1	SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: rhi:NGR_c35060 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain
YP_004550830.1	PFAM: Protein of unknown function DUF2182, transmembrane, metal-binding; KEGG: smd:Smed_3391 hypothetical protein
YP_004550831.1	PFAM: Protein of unknown function DUF1326; KEGG: smd:Smed_3392 hypothetical protein
YP_004550832.1	PFAM: Phosphate transporter; KEGG: smd:Smed_3393 phosphate transporter
YP_004550833.1	PFAM: Putitive phosphate transport regulator; KEGG: smd:Smed_3394 hypothetical protein
YP_004550834.1	TIGRFAM: DNA-binding, RecF; PFAM: RecF/RecN/SMC; KEGG: smd:Smed_3395 recombination protein F; SMART: ATPase, AAA+ type, core
YP_004550835.1	PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: smd:Smed_3396 molybdopterin biosynthesis protein MoeB
YP_004550836.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rlg:Rleg_4410 GCN5-related N-acetyltransferase
YP_004550837.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Transcription regulator MAATS, C-terminal; KEGG: smd:Smed_3397 TetR family transcriptional regulator
YP_004550838.1	KEGG: smd:Smed_3398 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_004550839.1	KEGG: smd:Smed_3399 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004550840.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3400 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004550841.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_3401 oxidoreductase domain-containing protein
YP_004550842.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3402 binding-protein-dependent transport systems inner membrane component
YP_004550843.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3403 binding-protein-dependent transport systems inner membrane component
YP_004550844.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3405 extracellular solute-binding protein
YP_004550845.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_3406 N-acetylmuramic acid-6-phosphate etherase
YP_004550846.1	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: smd:Smed_3407 ATPase BadF/BadG/BcrA/BcrD type
YP_004550847.1	KEGG: rhi:NGR_c35320 putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004550848.1	KEGG: smd:Smed_3409 glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: Sugar isomerase (SIS)
YP_004550849.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: smd:Smed_3410 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1
YP_004550850.1	KEGG: smd:Smed_3411 CutC family protein; HAMAP: Copper homeostasis protein cutC; PFAM: CutC
YP_004550851.1	KEGG: smd:Smed_3412 ROK family protein; PFAM: ROK
YP_004550852.1	PFAM: Amidase; KEGG: rhi:NGR_c35370 hypothetical protein
YP_004550853.1	PFAM: Uncharacterised protein family CysZ; KEGG: smd:Smed_3414 CysZ-like protein
YP_004550854.1	KEGG: smd:Smed_3415 hypothetical protein; HAMAP: SlyX; PFAM: SlyX
YP_004550855.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_3416 basic membrane lipoprotein
YP_004550856.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_3417 methionine sulfoxide reductase A
YP_004550857.1	KEGG: smd:Smed_3418 putative signal peptide protein
YP_004550858.1	KEGG: oan:Oant_0621 HicB family protein
YP_004550859.1	KEGG: pde:Pden_1497 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004550860.1	PFAM: Major facilitator superfamily MFS-1; KEGG: pde:Pden_1496 major facilitator transporter
YP_004550861.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pde:Pden_1495 TonB-dependent receptor
YP_004550862.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: pde:Pden_1494 monooxygenase, FAD-binding
YP_004550863.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rlg:Rleg_2004 major facilitator superfamily MFS_1
YP_004550864.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3422 LysR family transcriptional regulator
YP_004550865.1	PFAM: Transport-associated; KEGG: smd:Smed_3423 transport-associated
YP_004550866.1	PFAM: Auxin efflux carrier; KEGG: smd:Smed_3424 auxin efflux carrier
YP_004550867.1	TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: smd:Smed_3425 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV
YP_004550868.1	PFAM: Cytochrome c, class I; KEGG: smd:Smed_3426 cytochrome c class I
YP_004550869.1	PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: smd:Smed_3427 3-deoxy-manno-octulosonate cytidylyltransferase
YP_004550870.1	KEGG: smd:Smed_3428 prephenate dehydratase; PFAM: Prephenate dehydratase
YP_004550871.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_3429 hypothetical protein
YP_004550872.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_c35540 putative glyoxalase/bleomycin resistance protein/dioxygenase
YP_004550873.1	KEGG: rhi:NGR_c35550 putative transcriptional regulator
YP_004550874.1	KEGG: smd:Smed_3430 NUDIX hydrolase; PFAM: NADH pyrophosphatase-like, N-terminal; Zinc ribbon, NADH pyrophosphatase; NUDIX hydrolase domain
YP_004550875.1	PFAM: Histidine triad (HIT) protein; KEGG: rhi:NGR_c35570 putative histidine triad (HIT) protein
YP_004550876.1	TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: DNA polymerase III, gamma subunit, domain III; DNA polymerase III, subunit gamma/ tau, C-terminal; ATPase, AAA-type, core; KEGG: smd:Smed_3432 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core
YP_004550877.1	TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: smd:Smed_3433 hypothetical protein; PFAM: Uncharacterised protein family UPF0133
YP_004550878.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_3434 lysine exporter protein LysE/YggA
YP_004550879.1	TIGRFAM: RecR protein; HAMAP: RecR protein; KEGG: smd:Smed_3435 recombination protein RecR; SMART: Toprim domain
YP_004550880.1	KEGG: smd:Smed_3436 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like
YP_004550881.1	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: smd:Smed_3437 protein of unknown function DUF894 DitE
YP_004550882.1	KEGG: smd:Smed_3438 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP
YP_004550883.1	TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; K Homology, type 1, subgroup; KEGG: smd:Smed_3439 transcription elongation factor NusA; SMART: RNA-binding domain, S1; K Homology
YP_004550884.1	PFAM: Protein of unknown function DUF448; KEGG: smd:Smed_3440 hypothetical protein
YP_004550885.1	KEGG: smd:Smed_3441 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Initiation factor 2 associated region, bacterial; Translation elongation factor EFTu/EF1A, domain 2
YP_004550886.1	TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: rhi:NGR_c35690 ribosome-binding factor A; PFAM: Ribosome-binding factor A
YP_004550887.1	TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: smd:Smed_3443 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II
YP_004550888.1	KEGG: smd:Smed_3444 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_004550889.1	KEGG: smd:Smed_3445 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15
YP_004550890.1	KEGG: rhi:NGR_c35730 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA-binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology
YP_004550891.1	PFAM: Methyltransferase small; KEGG: smd:Smed_3447 methyltransferase small
YP_004550892.1	KEGG: smd:Smed_3448 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004550893.1	PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: smd:Smed_3449 3-oxoacyl-(acyl carrier protein) synthase I; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_004550894.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: smd:Smed_3450 3-hydroxydecanoyl-(acyl carrier protein) dehydratase
YP_004550895.1	PFAM: Ferric-uptake regulator; KEGG: smd:Smed_3451 ferric uptake regulator family protein
YP_004550896.1	PFAM: Uncharacterised protein family UPF0126; KEGG: smd:Smed_3452 hypothetical protein
YP_004550897.1	PFAM: Domain of unknown function DUF218; KEGG: smd:Smed_3453 hypothetical protein
YP_004550898.1	KEGG: smd:Smed_3455 hypothetical protein; TIGRFAM: Conserved hypothetical protein FYDLN acid; PFAM: Conserved hypothetical protein FYDLN acid
YP_004550899.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: smd:Smed_3456 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain
YP_004550900.1	PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: smd:Smed_3457 cytidylate kinase
YP_004550901.1	TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: smd:Smed_3458 30S ribosomal protein S1; SMART: RNA-binding domain, S1
YP_004550902.1	KEGG: smd:Smed_3459 hypothetical protein
YP_004550903.1	KEGG: smd:Smed_3460 hypothetical protein
YP_004550904.1	PFAM: BA14K-like; KEGG: smd:Smed_3461 hypothetical protein
YP_004550905.1	KEGG: smd:Smed_3462 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; HAMP linker domain
YP_004550906.1	KEGG: rhi:NGR_c35930 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_004550907.1	KEGG: smd:Smed_3463 hypothetical protein
YP_004550908.1	KEGG: smd:Smed_3464 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease
YP_004550909.1	PFAM: Integrase, catalytic core; Transposase IS3/IS911family; KEGG: rpt:Rpal_4342 integrase catalytic region
YP_004550911.1	KEGG: rlt:Rleg2_0802 hypothetical protein
YP_004550912.1	PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: rlg:Rleg_3124 excinuclease ABC C subunit domain protein
YP_004550913.1	TIGRFAM: Selenoprotein, Rdx type; KEGG: smd:Smed_3465 putative selenoprotein
YP_004550914.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_3466 DoxX family protein
YP_004550915.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: smd:Smed_3467 nucleoside diphosphate kinase regulator
YP_004550916.1	KEGG: rhi:NGR_c36050 hypothetical protein
YP_004550917.1	TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: smd:Smed_3469 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal
YP_004550918.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3470 major facilitator transporter
YP_004550919.1	KEGG: smd:Smed_3471 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004550920.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3472 GCN5-related N-acetyltransferase
YP_004550921.1	PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smd:Smed_3473 exopolysaccharide synthesis ExoD
YP_004550922.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: smd:Smed_3475 OmpA/MotB domain-containing protein
YP_004550923.1	TIGRFAM: Lysine-2,3-aminomutase-related; Conserved hyprothetical protein CHP00238, KamA; KEGG: smd:Smed_3476 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM
YP_004550924.1	TIGRFAM: Lysyl-tRNA synthetase-related; KEGG: smd:Smed_3477 lysine--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N)
YP_004550925.1	SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: smd:Smed_3478 elongation factor P; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like
YP_004550926.1	KEGG: smd:Smed_3479 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_004550927.1	PFAM: Rubrerythrin; Domain of unknown function DUF125, transmembrane; KEGG: smd:Smed_3480 rubrerythrin
YP_004550928.1	PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: smd:Smed_3481 transglutaminase family protein cysteine peptidase BTLCP
YP_004550929.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_3482 hypothetical protein
YP_004550930.1	KEGG: rhi:NGR_c36200 translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal
YP_004550931.1	TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: smd:Smed_3484 50S ribosomal protein L35; PFAM: Ribosomal protein L35
YP_004550932.1	TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: smd:Smed_3485 50S ribosomal protein L20; PFAM: Ribosomal protein L20
YP_004550933.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: smd:Smed_3486 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal
YP_004550934.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: smd:Smed_3487 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial
YP_004550935.1	KEGG: smd:Smed_3488 hypothetical protein
YP_004550936.1	KEGG: smd:Smed_3489 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004550937.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3490 LysR family transcriptional regulator
YP_004550938.1	PFAM: Protein of unknown function DUF892; KEGG: smd:Smed_3491 hypothetical protein
YP_004550939.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3492 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004550940.1	KEGG: smd:Smed_3493 hypothetical protein
YP_004550941.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_3494 aldo/keto reductase
YP_004550942.1	KEGG: smd:Smed_3495 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_004550943.1	KEGG: smd:Smed_3496 hypothetical protein
YP_004550944.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: smd:Smed_3497 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3
YP_004550945.1	PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: smd:Smed_3498 exodeoxyribonuclease VII large subunit
YP_004550946.1	PFAM: Flavodoxin-like fold; KEGG: smd:Smed_3499 NAD(P)H dehydrogenase (quinone)
YP_004550947.1	KEGG: smd:Smed_3500 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004550948.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3501 hypothetical protein
YP_004550949.1	PFAM: Peptidase M29, aminopeptidase II; KEGG: smd:Smed_3504 peptidase M29 aminopeptidase II
YP_004550950.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3505 glutathione S-transferase domain-containing protein
YP_004550951.1	PFAM: HTH transcriptional regulator, MarR; KEGG: smd:Smed_3506 MarR family transcriptional regulator
YP_004550952.1	KEGG: smd:Smed_3507 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain
YP_004550953.1	KEGG: smd:Smed_3508 arsenate reductase and related; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like
YP_004550954.1	KEGG: smd:Smed_3509 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004550955.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: smd:Smed_3510 succinylglutamate desuccinylase/aspartoacylase
YP_004550956.1	KEGG: rhi:NGR_c36490 hypothetical protein
YP_004550957.1	KEGG: rhi:NGR_c36510 hypothetical protein
YP_004550958.1	KEGG: mes:Meso_4551 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004550959.1	PFAM: PilT protein, N-terminal; KEGG: mes:Meso_4552 PilT protein-like
YP_004550960.1	PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: smd:Smed_3517 GMP synthase
YP_004550961.1	KEGG: smd:Smed_3518 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TIGRFAM: 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative; PFAM: Nucleoside phosphorylase domain
YP_004550962.1	KEGG: smd:Smed_3519 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004550963.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_3521 GCN5-related N-acetyltransferase
YP_004550964.1	PFAM: Uncharacterised conserved protein UCP028101; KEGG: smd:Smed_3522 hypothetical protein
YP_004550965.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_004550966.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rhi:NGR_c36570 magnesium/cobalt transport protein, CorA
YP_004550967.1	PFAM: Peptidase M75, Imelysin; KEGG: smd:Smed_3527 putative signal peptide protein
YP_004550968.1	PFAM: Protein of unknown function DUF1111; KEGG: smd:Smed_3528 hypothetical protein
YP_004550969.1	PFAM: Peptidase M75, Imelysin; KEGG: smd:Smed_3529 putative iron-regulated protein
YP_004550970.1	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: smd:Smed_3530 Fmu (Sun) domain-containing protein
YP_004550971.1	KEGG: smd:Smed_3531 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase
YP_004550972.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3533 NAD-dependent epimerase/dehydratase
YP_004550973.1	PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; KEGG: smd:Smed_3534 hypothetical protein
YP_004550974.1	KEGG: smd:Smed_3535 glutathione S-transferase domain-containing protein; manually curated; PFAM: Glutathione S-transferase, C-terminal
YP_004550975.1	TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: smd:Smed_3536 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA
YP_004550976.1	KEGG: smd:Smed_3537 putative signal peptide protein
YP_004550977.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3538 NADH dehydrogenase (ubiquinone)
YP_004550978.1	PFAM: Protein of unknown function DUF1330; KEGG: rhi:NGR_c36690 hypothetical protein
YP_004550979.1	SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase; KEGG: smd:Smed_3540 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain
YP_004550980.1	PFAM: Histidine phosphatase superfamily, clade-1; KEGG: smd:Smed_3541 phosphoglycerate mutase
YP_004550981.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3542 hypothetical protein
YP_004550982.1	SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: smd:Smed_3543 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, C-terminal
YP_004550983.1	TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: smd:Smed_3544 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: Tetrapyrrole methylase
YP_004550984.1	TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: rhi:NGR_c36770 hypothetical protein; PFAM: Uncharacterised protein family UPF0102
YP_004550985.1	PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: smd:Smed_3546 glutathione synthetase
YP_004550986.1	TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: smd:Smed_3547 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core
YP_004550987.1	TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: smd:Smed_3549 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004550988.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_0553 amino acid efflux protein
YP_004550989.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_3551 lysine exporter protein LysE/YggA
YP_004550990.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_3552 hypothetical protein
YP_004550991.1	KEGG: smd:Smed_3553 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004550992.1	PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase; HAMAP: DeoxyUTP pyrophosphatase; KEGG: smd:Smed_3554 deoxyuridine 5'-triphosphate nucleotidohydrolase
YP_004550993.1	KEGG: smd:Smed_3555 peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_004550994.1	PFAM: Drug/metabolite transporter; KEGG: rhi:NGR_c36950 putative transmembrane protein
YP_004550995.1	KEGG: smd:Smed_3557 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004550996.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_c36980 NAD-dependent epimerase/dehydratase
YP_004550997.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_3558 glutathione-dependent formaldehyde-activating GFA
YP_004550998.1	KEGG: smd:Smed_3559 myo-inositol catabolism IolB domain-containing protein
YP_004550999.1	KEGG: rhi:NGR_c37010 xylose isomerase domain protein, TIM barrel; PFAM: Xylose isomerase, TIM barrel domain
YP_004551000.1	KEGG: smd:Smed_3561 thiamine pyrophosphate protein central region; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004551001.1	KEGG: rhi:NGR_c37030 PfkB family carbohydrate kinase protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase
YP_004551002.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_3563 RpiR family transcriptional regulator
YP_004551003.1	KEGG: bfu:BC1G_11095 hypothetical protein
YP_004551004.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3564 oxidoreductase domain-containing protein
YP_004551005.1	PFAM: Glutamine amidotransferase, class-II; KEGG: smd:Smed_3565 hypothetical protein
YP_004551006.1	TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: smd:Smed_3566 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein
YP_004551007.1	PFAM: Transcription regulator Rrf2; KEGG: smd:Smed_3567 BadM/Rrf2 family transcriptional regulator
YP_004551008.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_3568 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004551009.1	KEGG: smd:Smed_3569 ankyrin; PFAM: Ankyrin repeat; SMART: Ankyrin repeat
YP_004551010.1	KEGG: smd:Smed_3570 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551011.1	KEGG: smd:Smed_3571 2-polyprenylphenol 6-hydroxylase; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1
YP_004551012.1	TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: smd:Smed_3572 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase
YP_004551013.1	KEGG: smd:Smed_3573 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004551014.1	PFAM: Crotonase, core; KEGG: rhi:NGR_c37150 enoyl-CoA hydratase
YP_004551015.1	TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: smd:Smed_0001 30S ribosomal protein S20; PFAM: Ribosomal protein S20
YP_004551016.1	manually curated; KEGG: bur:Bcep18194_B3018 phenylalanine/histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase
YP_004551017.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: kko:Kkor_2078 transcriptional regulator, LysR family
YP_004551018.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ara:Arad_8268 peptide ABC transporter
YP_004551019.1	KEGG: eca:ECA3961 hypothetical protein
YP_004551020.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cmi:CMM_0232 putative peptide ABC transporter, permease component
YP_004551021.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: cms:CMS_0798A putative ABC transporter permease
YP_004551022.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: apb:SAR116_0064 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004551023.1	KEGG: smd:Smed_5213 hypothetical protein
YP_004551024.1	PFAM: CsbD-like; KEGG: smd:Smed_4727 CsbD family protein
YP_004551026.1	manually curated; KEGG: rhi:NGR_b12560 hypothetical protein
YP_004551027.1	KEGG: smd:Smed_5156 hypothetical protein
YP_004551028.1	PFAM: Uncharacterised protein family UPF0118; KEGG: rce:RC1_2451 hypothetical protein
YP_004551029.1	KEGG: rva:Rvan_3371 benzoate transporter
YP_004551030.1	KEGG: rle:pRL120041 hypothetical protein
YP_004551031.1	PFAM: Protein of unknown function DUF1810; KEGG: sno:Snov_0410 protein of unknown function DUF1810
YP_004551032.1	KEGG: rlg:Rleg_5358 hypothetical protein
YP_004551033.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: atu:Atu4585 hypothetical protein
YP_004551034.1	KEGG: atu:Atu4584 TetR family transcriptional regulator
YP_004551035.1	KEGG: rle:RL0457 putative transposase
YP_004551036.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551037.1	KEGG: ani:AN7522.2 hypothetical protein
YP_004551038.1	PFAM: Regulator of chromosome condensation, RCC1; KEGG: chl:Chy400_2520 regulator of chromosome condensation RCC1
YP_004551039.1	KEGG: mno:Mnod_6522 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; GAF
YP_004551040.1	KEGG: smd:Smed_3955 hypothetical protein
YP_004551041.1	KEGG: son:SO_0667 hypothetical protein
YP_004551042.1	KEGG: mpo:Mpop_2568 hypothetical protein
YP_004551043.1	KEGG: smd:Smed_6027 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation
YP_004551044.1	KEGG: rle:RL1867 hypothetical protein
YP_004551045.1	KEGG: stp:Strop_2372 short-chain dehydrogenase/reductase SDR
YP_004551046.1	manually curated; PFAM: Signal transduction response regulator, C-terminal; KEGG: rhi:NGR_b15810 putative transcriptional regulator; SMART: Signal transduction response regulator, C-terminal
YP_004551047.1	KEGG: rhi:NGR_b15820 putative transport protein
YP_004551048.1	KEGG: rhi:NGR_b15830 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_004551049.1	KEGG: rec:RHECIAT_PA0000216 hypothetical protein
YP_004551050.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rhi:NGR_b15840 probable short-chain dehydrogenase
YP_004551051.1	KEGG: rhi:NGR_b15850 metallo-beta-lactamase superfamily protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004551052.1	KEGG: atu:Atu8099 hypothetical protein
YP_004551053.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rhi:NGR_b00310 probable adenylate class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551054.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_5448 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551055.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_0847 cupin 2 domain-containing protein
YP_004551056.1	manually curated; KEGG: smd:Smed_0846 glucose sorbosone dehydrogenase
YP_004551057.1	KEGG: rle:RL2356 putative aldo/keto reductase protein; PFAM: NADP-dependent oxidoreductase domain
YP_004551058.1	PFAM: Uncharacterised conserved protein UCP028498; KEGG: smd:Smed_0844 hypothetical protein
YP_004551059.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: smd:Smed_0843 carboxymuconolactone decarboxylase
YP_004551060.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_0840 antibiotic biosynthesis monooxygenase
YP_004551061.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0839 LysR family transcriptional regulator
YP_004551062.1	KEGG: rle:RL2259 hypothetical protein
YP_004551063.1	PFAM: Protein of unknown function DUF3604; KEGG: rhi:NGR_b04980 hypothetical protein
YP_004551064.1	KEGG: rhi:NGR_b04990 hypothetical protein
YP_004551065.1	KEGG: met:M446_1542 hypothetical protein
YP_004551066.1	KEGG: met:M446_1543 hypothetical protein
YP_004551067.1	KEGG: smd:Smed_4830 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004551068.1	TIGRFAM: Conserved hypothetical protein CHP02587, putative integral membrane; KEGG: smd:Smed_5253 hypothetical protein
YP_004551069.1	KEGG: smd:Smed_5252 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02588; PFAM: Conserved hypothetical protein CHP02588
YP_004551070.1	PFAM: Protein of unknown function DUF433; KEGG: rhi:NGR_a03810 conserved hypothetical 24.5 kDa protein
YP_004551071.1	KEGG: rhi:NGR_c22280 putative transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004551072.1	PFAM: Methyltransferase type 11; KEGG: rhi:NGR_b02960 probable methyltransferase
YP_004551073.1	PFAM: Uncharacterised conserved protein UCP033199; KEGG: ret:RHE_CH01058 hypothetical protein
YP_004551074.1	KEGG: smd:Smed_5266 PfpI family intracellular peptidase; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI
YP_004551075.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_5265 putative ABC transporter, periplasmic solute-binding protein
YP_004551076.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5264 monosaccharide-transporting ATPase
YP_004551077.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5263 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551078.1	KEGG: smd:Smed_5262 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551079.1	KEGG: smd:Smed_5261 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_004551080.1	KEGG: smd:Smed_5260 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004551081.1	KEGG: smd:Smed_5259 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551082.1	KEGG: smd:Smed_5258 hypothetical protein
YP_004551083.1	KEGG: smd:Smed_1285 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004551084.1	KEGG: smd:Smed_5270 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease
YP_004551085.1	PFAM: Protein of unknown function DUF2161; KEGG: rhi:NGR_b02320 hypothetical protein
YP_004551086.1	KEGG: smd:Smed_2480 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004551087.1	KEGG: smd:Smed_2481 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004551088.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_2482 tripartite ATP-independent periplasmic transporter DctQ
YP_004551089.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_2483 hypothetical protein
YP_004551090.1	KEGG: smd:Smed_2484 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551091.1	KEGG: smd:Smed_2485 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal
YP_004551092.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_2486 NAD-dependent epimerase/dehydratase
YP_004551093.1	KEGG: smd:Smed_2487 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004551094.1	KEGG: smd:Smed_2488 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004551095.1	TIGRFAM: Alpha,alpha-trehalose-phosphate synthase; KEGG: smd:Smed_5911 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20
YP_004551096.1	KEGG: mes:Meso_2203 GreA/GreB family elongation factor
YP_004551097.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: xau:Xaut_2929 nucleoside diphosphate kinase regulator
YP_004551098.1	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: hdn:Hden_0531 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
YP_004551099.1	KEGG: rhi:NGR_c27510 putative membrane-bound dehydrogenase oxidoreductase protein
YP_004551100.1	PFAM: Major facilitator superfamily MFS-1; KEGG: avn:Avin_35770 major facilitator superfamily transporter
YP_004551101.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bpt:Bpet2251 TetR family transcriptional regulator
YP_004551102.1	KEGG: smd:Smed_5239 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551103.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_5240 aldehyde dehydrogenase
YP_004551104.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_5241 periplasmic binding protein/LacI transcriptional regulator
YP_004551105.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5242 monosaccharide-transporting ATPase
YP_004551106.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5243 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551107.1	HAMAP: 5-keto 4-deoxyuronate isomerase; KEGG: ipo:Ilyop_2926 4-deoxy-L-threo-5-hexulose uronate isomerase; PFAM: KduI/IolB isomerase
YP_004551108.1	KEGG: smd:Smed_1868 hypothetical protein
YP_004551109.1	KEGG: smd:Smed_5213 hypothetical protein
YP_004551110.1	KEGG: rlg:Rleg_5411 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004551111.1	KEGG: rle:pRL120283 putative two-component sensor histidine kinase transcriptional regulatory protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF
YP_004551112.1	KEGG: rle:pRL120284 putative ABC transporter component
YP_004551113.1	PFAM: ABC transporter-like; KEGG: rle:pRL120285 putative ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core
YP_004551114.1	PFAM: ABC transporter permease; KEGG: rle:pRL120286 putative permease component of ABC transporter
YP_004551115.1	PFAM: ABC transporter permease; KEGG: rlg:Rleg_4646 inner-membrane translocator
YP_004551116.1	KEGG: rlg:Rleg_4647 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_004551117.1	KEGG: lbf:LBF_3231 ArsR family transcriptional regulator; manually curated; SMART: HTH transcriptional regulator, ArsR
YP_004551118.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: ote:Oter_1306 activator of HSP90 ATPase 1 family protein
YP_004551119.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5846 TetR family transcriptional regulator
YP_004551120.1	KEGG: rpb:RPB_2764 hypothetical protein
YP_004551121.1	KEGG: smd:Smed_5297 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551122.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5148 major facilitator transporter
YP_004551123.1	KEGG: rlt:Rleg2_5433 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004551124.1	KEGG: ara:Arad_14200 phenazine biosynthetic protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004551125.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu6055 LysR family transcriptional regulator
YP_004551126.1	PFAM: Cytochrome c, class I; KEGG: ret:RHE_PE00171 hypothetical protein
YP_004551127.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_5448 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551128.1	PFAM: GYD; KEGG: rle:RL2480 hypothetical protein
YP_004551129.1	KEGG: smd:Smed_5647 MscS mechanosensitive ion channel; manually curated; PFAM: Mechanosensitive ion channel MscS
YP_004551130.1	KEGG: smd:Smed_5283 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_004551131.1	KEGG: rhi:NGR_c14210 hypothetical protein
YP_004551132.1	PFAM: Methyltransferase type 11; KEGG: rec:RHECIAT_PC0000208 putative methyltransferase protein
YP_004551133.1	PFAM: Methyltransferase type 11; KEGG: bcv:Bcav_3652 methyltransferase type 11
YP_004551134.1	SMART: Tetratricopeptide repeat; KEGG: smd:Smed_5130 TPR repeat-containing protein
YP_004551135.1	KEGG: smd:Smed_5131 hypothetical protein
YP_004551136.1	PFAM: Type II/III secretion system; Transport-associated; KEGG: smd:Smed_5132 type II and III secretion system protein
YP_004551137.1	KEGG: smd:Smed_5133 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551138.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_5134 TRAP dicarboxylate transporter-DctP subunit
YP_004551139.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_5135 tripartite ATP-independent periplasmic transporter DctQ
YP_004551140.1	KEGG: smd:Smed_5136 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004551141.1	KEGG: smd:Smed_5137 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase
YP_004551142.1	KEGG: smd:Smed_5138 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_004551143.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: smd:Smed_5139 transcription elongation factor regulatory protein
YP_004551144.1	KEGG: smd:Smed_5140 hypothetical protein
YP_004551145.1	KEGG: mst:Msp_0474 hypothetical protein
YP_004551146.1	KEGG: smd:Smed_5142 putative transmembrane anti-sigma factor
YP_004551147.1	KEGG: smd:Smed_5143 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004551148.1	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: smd:Smed_5144 peptidase S8/S53 subtilisin kexin sedolisin
YP_004551149.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE4; KEGG: smd:Smed_5153 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004551150.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_5154 hypothetical protein
YP_004551151.1	KEGG: smd:Smed_5155 hypothetical protein
YP_004551152.1	KEGG: smd:Smed_5156 hypothetical protein
YP_004551153.1	KEGG: smd:Smed_5159 hypothetical protein
YP_004551154.1	KEGG: smd:Smed_5160 fatty acid desaturase; manually curated; PFAM: Fatty acid desaturase, type 1
YP_004551155.1	KEGG: smd:Smed_5161 hypothetical protein
YP_004551156.1	KEGG: smd:Smed_5162 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004551157.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: ara:Arad_8745 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_004551158.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_4130 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004551159.1	KEGG: rlg:Rleg_1045 hypothetical protein
YP_004551160.1	KEGG: smd:Smed_4129 hypothetical protein
YP_004551161.1	KEGG: rlg:Rleg_1032 hypothetical protein
YP_004551162.1	KEGG: ret:RHE_PE00171 hypothetical protein
YP_004551163.1	KEGG: smd:Smed_5145 hypothetical protein
YP_004551164.1	KEGG: smd:Smed_5146 chaperone DnaJ domain-containing protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004551165.1	KEGG: rlg:Rleg_2608 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004551166.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold; PAS fold-4; KEGG: mes:Meso_0620 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; PAC motif; PAS
YP_004551167.1	KEGG: rlg:Rleg_0878 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: Glutathione-dependent formaldehyde-activating, GFA
YP_004551168.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5163 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core
YP_004551169.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5164 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551170.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5165 binding-protein-dependent transport systems inner membrane component
YP_004551171.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5166 binding-protein-dependent transport systems inner membrane component
YP_004551172.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5167 4-phytase
YP_004551173.1	PFAM: Amidohydrolase 3; KEGG: smd:Smed_5168 amidohydrolase 3
YP_004551174.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5169 LysR family transcriptional regulator
YP_004551175.1	PFAM: Peptidase S58, DmpA; KEGG: smd:Smed_5170 peptidase S58 DmpA
YP_004551176.1	KEGG: smd:Smed_5171 aminotransferase class IV; PFAM: Aminotransferase, class IV
YP_004551177.1	PFAM: BA14K-like; KEGG: rhi:NGR_b10950 hypothetical protein
YP_004551178.1	PFAM: Endoribonuclease L-PSP; KEGG: ret:RHE_CH00602 translation initiation inhibitor protein
YP_004551179.1	PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: oan:Oant_3743 hypothetical protein
YP_004551180.1	manually curated; KEGG: oan:Oant_3744 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004551181.1	PFAM: ABC transporter-like; KEGG: oan:Oant_3745 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551182.1	KEGG: oan:Oant_3746 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004551183.1	KEGG: oan:Oant_3747 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004551184.1	KEGG: oan:Oant_3748 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004551185.1	KEGG: oan:Oant_3749 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004551186.1	PFAM: Aldose 1-epimerase; KEGG: smd:Smed_5831 aldose 1-epimerase
YP_004551187.1	KEGG: smd:Smed_5832 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551188.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5833 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551189.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5834 monosaccharide-transporting ATPase
YP_004551190.1	KEGG: smd:Smed_5835 putative ABC transporter, periplasmic solute-binding protein
YP_004551191.1	KEGG: smd:Smed_5836 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551192.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_5837 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004551193.1	KEGG: smd:Smed_5838 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551194.1	KEGG: smd:Smed_5841 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551195.1	KEGG: smd:Smed_5843 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551196.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: smd:Smed_5844 N-acylglucosamine 2-epimerase
YP_004551197.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5845 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004551198.1	KEGG: rhi:NGR_b20820 carbonic anhydrase, Cah; PFAM: Carbonic anhydrase, alpha-class, catalytic domain
YP_004551199.1	PFAM: Protein of unknown function DUF2277; KEGG: smd:Smed_5849 hypothetical protein
YP_004551200.1	KEGG: smd:Smed_5850 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004551201.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5851 LysR family transcriptional regulator
YP_004551202.1	PFAM: Peptidase M10B, serralysin, C-terminal; Peptidase M10, metallopeptidase; Haemolysin-type calcium-binding repeat; KEGG: rhi:NGR_b08100 possible protease; SMART: Peptidase, metallopeptidase
YP_004551203.1	KEGG: smd:Smed_5286 hypothetical protein
YP_004551204.1	KEGG: pde:Pden_2723 selenophosphate synthetase; TIGRFAM: Selenide water dikinase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_004551205.1	KEGG: pde:Pden_2724 hypothetical protein
YP_004551206.1	KEGG: azo:azo0103 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like
YP_004551207.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551208.1	KEGG: smd:Smed_6040 hypothetical protein
YP_004551209.1	KEGG: smd:Smed_5307 hypothetical protein
YP_004551210.1	manually curated; KEGG: rec:RHECIAT_CH0003321 hypothetical protein
YP_004551211.1	KEGG: pde:Pden_2825 selenocysteine-specific translation elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2
YP_004551212.1	KEGG: azc:AZC_1154 Sel1 repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like
YP_004551213.1	PFAM: Pyridoxal phosphate-dependent transferase; TIGRFAM: L-seryl-tRNA selenium transferase; HAMAP: L-seryl-tRNA selenium transferase; KEGG: oan:Oant_2867 selenocysteine synthase
YP_004551214.1	TIGRFAM: Formate dehydrogenase accessory protein; HAMAP: Formate dehydrogenase accessory protein; KEGG: pde:Pden_2826 formate dehydrogenase accessory protein FdhE; PFAM: Formate dehydrogenase accessory protein
YP_004551215.1	TIGRFAM: Formate dehydrogenase, gamma subunit; KEGG: xau:Xaut_0660 formate dehydrogenase, gamma subunit
YP_004551216.1	KEGG: pde:Pden_2828 formate dehydrogenase, beta subunit; TIGRFAM: Formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase, transmembrane
YP_004551217.1	Contains selenocysteine; KEGG: sno:Snov_3504 formate dehydrogenase, alpha subunit; manually curated; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Molydopterin dinucleotide-binding domain; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence
YP_004551219.1	KEGG: smd:Smed_5173 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004551220.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: ParB-like nuclease; RepB plasmid partition; KEGG: smd:Smed_5174 ParB-like partition protein; SMART: ParB-like nuclease
YP_004551221.1	KEGG: smd:Smed_5175 replication initiation protein RepC; manually curated; PFAM: Replication protein C
YP_004551222.1	KEGG: rle:RL2737 putative organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein
YP_004551224.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5327 TetR family transcriptional regulator
YP_004551225.1	KEGG: smd:Smed_5328 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004551226.1	KEGG: smd:Smed_5329 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004551227.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_5330 TetR family transcriptional regulator
YP_004551228.1	KEGG: smd:Smed_5721 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551229.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5722 LysR family transcriptional regulator
YP_004551230.1	TIGRFAM: Catalase-peroxidase haem; KEGG: smd:Smed_5331 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial
YP_004551231.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5332 major facilitator transporter
YP_004551232.1	PFAM: Cupin 2, conserved barrel; KEGG: rec:RHECIAT_CH0002052 hypothetical protein
YP_004551233.1	KEGG: smd:Smed_5333 cytosine deaminase; PFAM: Amidohydrolase 3
YP_004551234.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5334 inner-membrane translocator
YP_004551235.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5335 inner-membrane translocator
YP_004551236.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5336 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551237.1	PFAM: Amidase; KEGG: smd:Smed_5337 amidase
YP_004551238.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_5338 basic membrane lipoprotein
YP_004551239.1	manually curated; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_5352 putative adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551240.1	KEGG: smd:Smed_4829 hypothetical protein
YP_004551241.1	KEGG: rlg:Rleg_0865 hypothetical protein
YP_004551242.1	KEGG: smd:Smed_5353 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004551243.1	KEGG: smd:Smed_5354 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004551244.1	KEGG: ara:Arad_7432 oxidoreductase, molybdopterin-binding subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004551245.1	KEGG: smd:Smed_5356 putative xanthine dehydrogenase iron-sulfur-binding subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004551246.1	PFAM: Methyltransferase type 12; KEGG: nwi:Nwi_2149 hypothetical protein
YP_004551247.1	PFAM: Uncharacterised protein family Atu4866; KEGG: smd:Smed_5893 hypothetical protein
YP_004551248.1	KEGG: atu:Atu4867 hypothetical protein
YP_004551249.1	KEGG: smd:Smed_5892 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551250.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5891 LysR family transcriptional regulator
YP_004551251.1	TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: smd:Smed_5358 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit
YP_004551252.1	TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: smd:Smed_5359 potassium-transporting ATPase subunit B; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004551253.1	TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: smd:Smed_5360 potassium-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit
YP_004551254.1	KEGG: smd:Smed_5361 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF
YP_004551255.1	KEGG: smd:Smed_5362 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004551256.1	PFAM: Ion transport 2; KEGG: eli:ELI_00280 hypothetical protein
YP_004551257.1	KEGG: atu:Atu4619 ATP-dependent DNA helicase; PFAM: DNA helicase, UvrD/REP type; SMART: Helix-hairpin-helix DNA-binding motif, class 1
YP_004551258.1	manually curated; KEGG: rhi:NGR_b02240 hypothetical protein
YP_004551259.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: pol:Bpro_0079 glutathione S-transferase-like
YP_004551260.1	KEGG: smd:Smed_5877 streptomycin 3''-adenylyltransferase; PFAM: Nucleotidyl transferase domain
YP_004551261.1	KEGG: mlo:mlr6441 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; Oxidoreductase, N-terminal
YP_004551262.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ara:Arad_9045 sugar ABC transporter; SMART: ATPase, AAA+ type, core
YP_004551263.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02658 sugar ABC transporter, permease protein
YP_004551264.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_9048 sugar ABC transporter
YP_004551265.1	PFAM: ROK; Protein of unknown function DUF742; KEGG: ara:Arad_9050 transcriptional regulator protein
YP_004551266.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_5323 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004551267.1	KEGG: smd:Smed_5897 hypothetical protein
YP_004551268.1	KEGG: rhi:NGR_b02380 hypothetical protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial
YP_004551269.1	TIGRFAM: Penicillin-binding protein 1A; KEGG: mlo:mlr0215 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004551270.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5369 LysR family transcriptional regulator
YP_004551271.1	KEGG: reh:H16_B2518 NADH-dependent flavin oxidoreductase YqiG; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_004551272.1	PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_B2517 putative regulator of purine biosynthesis
YP_004551273.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_B2516 LysR family transcriptional regulator
YP_004551274.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL2545 hypothetical protein
YP_004551275.1	KEGG: smd:Smed_5425 hypothetical protein
YP_004551276.1	PFAM: Integrase, catalytic core, phage; KEGG: smd:Smed_5431 phage integrase family protein
YP_004551277.1	KEGG: rhi:NGR_b09740 hypothetical protein; manually curated; PFAM: Plasmid stabilisation system
YP_004551278.1	PFAM: CopG-like DNA-binding; KEGG: smd:Smed_5961 CopG family transcriptional regulator
YP_004551279.1	PFAM: PilT protein, N-terminal; KEGG: smd:Smed_6500 PilT domain-containing protein
YP_004551280.1	KEGG: rhi:NGR_b00470 hypothetical protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004551281.1	PFAM: Transposase, IS66; KEGG: rle:pRL100469 hypothetical protein
YP_004551282.1	KEGG: rhi:NGR_b00480 hypothetical protein
YP_004551283.1	KEGG: gdj:Gdia_0547 hypothetical protein
YP_004551284.1	KEGG: apt:APA01_42950 hypothetical protein
YP_004551285.1	KEGG: gbe:GbCGDNIH1_1178 hypothetical protein
YP_004551286.1	PFAM: DNA helicase, UvrD/REP type; KEGG: bch:Bcen2424_0207 hypothetical protein
YP_004551287.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004551289.1	PFAM: Heat shock protein 70; KEGG: avi:Avi_3078 possible heat shock protein
YP_004551290.1	KEGG: pna:Pnap_4270 hypothetical protein
YP_004551291.1	KEGG: avi:Avi_3079 hypothetical protein
YP_004551292.1	KEGG: aau:AAur_pTC10117 hypothetical protein
YP_004551293.1	manually curated; PFAM: Cold-shock protein, DNA-binding; KEGG: smd:Smed_2874 cold-shock DNA-binding domain-containing protein; SMART: Cold shock protein
YP_004551294.1	KEGG: ara:Arad_7852 transposase
YP_004551295.1	KEGG: mno:Mnod_7897 addiction module antitoxin, RelB/DinJ family; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin
YP_004551296.1	KEGG: mno:Mnod_7898 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system
YP_004551297.1	KEGG: azl:AZL_d04270 formate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004551298.1	KEGG: smd:Smed_4895 cupin 2 domain-containing protein
YP_004551299.1	KEGG: smd:Smed_6140 carbonate dehydratase; PFAM: Carbonic anhydrase, alpha-class, catalytic domain
YP_004551300.1	KEGG: rhi:NGR_a00350 uncharacterized transcription regulator (Cro/CI family); PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004551301.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_004551302.1	KEGG: lrh:LGG_01426 ABC transporter permease
YP_004551303.1	PFAM: Chaperonin Cpn60/TCP-1; manually curated; TIGRFAM: Chaperonin Cpn60; KEGG: smd:Smed_6084 chaperonin GroEL; HAMAP: Chaperonin Cpn60
YP_004551304.1	KEGG: smd:Smed_6083 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10
YP_004551305.1	manually curated; KEGG: ara:Arad_14019 transposase
YP_004551306.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: smd:Smed_6081 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004551307.1	KEGG: smd:Smed_1899 hypothetical protein
YP_004551308.1	KEGG: smd:Smed_1899 hypothetical protein
YP_004551309.1	KEGG: rlt:Rleg2_2435 hypothetical protein
YP_004551310.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004551311.1	PFAM: Cytochrome P450; KEGG: mlo:mlr6364 cytochrome P-450
YP_004551312.1	PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; KEGG: smd:Smed_6431 multicopper oxidase type 2
YP_004551313.1	KEGG: smd:Smed_6430 hypothetical protein
YP_004551314.1	KEGG: smd:Smed_6429 monophenol monooxygenase; PFAM: Tyrosinase
YP_004551315.1	KEGG: smd:Smed_6428 hypothetical protein
YP_004551316.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: rlg:Rleg_5733 magnesium and cobalt transport protein CorA
YP_004551317.1	KEGG: rhi:NGR_b02260 putative transcriptional regulator protein, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004551318.1	KEGG: smd:Smed_6119 hypothetical protein
YP_004551319.1	KEGG: smd:Smed_6120 hypothetical protein
YP_004551320.1	KEGG: mlb:MLBr_02620 hypothetical protein
YP_004551321.1	PFAM: Domain of unknown function DUF88; KEGG: rhi:NGR_b08150 hypothetical protein
YP_004551322.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004551323.1	PFAM: Integrase, catalytic core; KEGG: bja:bll5000 putative transposase
YP_004551324.1	KEGG: smd:Smed_6340 transposase IS66
YP_004551325.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004551326.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004551327.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: oca:OCAR_6732 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; Signal transduction response regulator, receiver domain
YP_004551328.1	TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; KEGG: smd:Smed_6456 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004551329.1	KEGG: smd:Smed_6457 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004551330.1	KEGG: ret:RHE_PB00079 thiamine-phosphate pyrophosphorylase
YP_004551331.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: smd:Smed_6239 transposase IS116/IS110/IS902 family protein
YP_004551332.1	KEGG: rle:RL0792 putative transposase; manually curated; PFAM: Integrase, catalytic core
YP_004551333.1	PFAM: Transposase IS3/IS911family; KEGG: ara:Arad_9823 insertion sequence transposase protein
YP_004551334.1	KEGG: ara:Arad_7394 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_004551335.1	PFAM: Luciferase-like, subgroup; KEGG: rhi:NGR_a01140 conserved hypothetical 39.1 kDa protein
YP_004551336.1	KEGG: mlo:mlr5878 gamma-BHC dehydrochlorinase
YP_004551337.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004551338.1	manually curated; KEGG: smd:Smed_6070 hypothetical protein
YP_004551339.1	PFAM: Peptidoglycan binding-like; KEGG: smd:Smed_1867 chitinase-like protein
YP_004551340.1	KEGG: smd:Smed_1867 chitinase-like protein
YP_004551341.1	KEGG: smd:Smed_4778 hypothetical protein
YP_004551342.1	KEGG: smd:Smed_1634 hypothetical protein
YP_004551343.1	KEGG: smd:Smed_6170 hypothetical protein
YP_004551344.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_004551345.1	KEGG: rlg:Rleg_4897 hypothetical protein
YP_004551346.1	KEGG: atu:Atu4214 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004551347.1	KEGG: rhi:NGR_b19220 hypothetical protein
YP_004551349.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_5998 NUDIX hydrolase
YP_004551350.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_5993 MucR family transcriptional regulator
YP_004551351.1	KEGG: smd:Smed_6052 hypothetical protein
YP_004551352.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00321 insertion sequence transposase protein
YP_004551353.1	KEGG: ret:RHE_PD00322 insertion sequence transposase protein
YP_004551354.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_6054 methyltransferase type 11
YP_004551355.1	KEGG: ret:RHE_PA00078 IS21 family insertion sequence ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; AT hook, DNA-binding motif
YP_004551356.1	KEGG: smd:Smed_6052 hypothetical protein
YP_004551357.1	PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; KEGG: smd:Smed_5992 thiamine pyrophosphate binding domain-containing protein
YP_004551358.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551359.1	KEGG: smd:Smed_5977 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004551360.1	KEGG: rhi:NGR_b01470 hypothetical protein
YP_004551361.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6244 transposase IS3/IS911 family protein
YP_004551362.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_004551363.1	KEGG: smd:Smed_5967 WGR domain-containing protein; PFAM: WGR domain; SMART: WGR domain
YP_004551364.1	KEGG: smd:Smed_6378 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004551365.1	PFAM: Protein of unknown function DUF891; KEGG: eba:ebB4 hypothetical protein
YP_004551366.1	KEGG: rpc:RPC_1581 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004551367.1	KEGG: oan:Oant_4549 hypothetical protein
YP_004551368.1	KEGG: smd:Smed_6379 hypothetical protein
YP_004551369.1	SMART: ATPase, AAA+ type, core; KEGG: smd:Smed_6380 hypothetical protein
YP_004551370.1	PFAM: Bacterial mobilisation; CopG-like DNA-binding; KEGG: smd:Smed_6381 mobilisation protein
YP_004551371.1	KEGG: smd:Smed_6382 hypothetical protein
YP_004551372.1	KEGG: smd:Smed_6383 hypothetical protein
YP_004551373.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_6384 hypothetical protein
YP_004551374.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551375.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004551376.1	KEGG: pde:Pden_4584 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551377.1	KEGG: mno:Mnod_2660 hypothetical protein
YP_004551378.1	PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: smd:Smed_6396 TraG family protein
YP_004551379.1	KEGG: smd:Smed_6397 P-type DNA transfer ATPase VirB11; TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E
YP_004551380.1	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: smd:Smed_6398 conjugation TrbI family protein
YP_004551381.1	KEGG: smd:Smed_6399 P-type conjugative transfer protein VirB9; TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer, TrbG/VirB9/CagX
YP_004551382.1	PFAM: VirB8; KEGG: smd:Smed_6400 VirB8 family protein
YP_004551383.1	PFAM: Conjugal transfer, TrbL/VirB6; KEGG: smd:Smed_6401 TrbL/VirB6 plasmid conjugal transfer protein
YP_004551384.1	KEGG: smd:Smed_6402 hypothetical protein
YP_004551385.1	PFAM: Type IV secretion system; KEGG: smd:Smed_6403 conjugal transfer protein
YP_004551386.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_6404 lytic transglycosylase catalytic
YP_004551387.1	KEGG: smd:Smed_6405 type IV secretion/conjugal transfer ATPase; TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain
YP_004551388.1	PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; KEGG: smd:Smed_6406 type IV secretory pathway VirB3 family protein
YP_004551389.1	PFAM: Conjugal transfer,TrbC; KEGG: smd:Smed_6407 VirB2 type IV secretion fmaily protein
YP_004551390.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: smd:Smed_6408 lytic transglycosylase catalytic
YP_004551391.1	KEGG: smd:Smed_6409 hypothetical protein
YP_004551392.1	PFAM: Staphylococcal nuclease (SNase-like); KEGG: smd:Smed_6411 nuclease
YP_004551393.1	KEGG: smd:Smed_6413 hypothetical protein
YP_004551394.1	KEGG: smd:Smed_6414 hypothetical protein
YP_004551395.1	KEGG: smd:Smed_6415 hypothetical protein
YP_004551396.1	KEGG: xau:Xaut_4990 hypothetical protein
YP_004551397.1	KEGG: smd:Smed_6417 hypothetical protein
YP_004551398.1	KEGG: smd:Smed_6418 putative transmembrane protein
YP_004551399.1	KEGG: smd:Smed_6419 hypothetical protein
YP_004551400.1	KEGG: mlo:mll6378 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain
YP_004551401.1	PFAM: Negative transcriptional regulator; KEGG: rlt:Rleg2_5075 FMN-binding negative transcriptional regulator
YP_004551402.1	KEGG: rlt:Rleg2_5076 GntR family transcriptional regulator with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004551403.1	KEGG: smd:Smed_4460 hypothetical protein
YP_004551404.1	KEGG: smd:Smed_4459 hypothetical protein
YP_004551405.1	KEGG: smd:Smed_4458 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004551406.1	KEGG: avi:Avi_2868 hypothetical protein
YP_004551407.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004551408.1	TIGRFAM: Pyruvate, phosphate dikinase; KEGG: met:M446_2710 pyruvate phosphate dikinase; PFAM: PEP-utilising enzyme; Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain
YP_004551409.1	PFAM: Drug/metabolite transporter; KEGG: jan:Jann_1548 hypothetical protein
YP_004551410.1	KEGG: mlo:mlr5878 gamma-BHC dehydrochlorinase
YP_004551411.1	TIGRFAM: Uncharacterised protein family UPF0149; KEGG: smd:Smed_6363 YecA family protein
YP_004551412.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6364 transposase IS66
YP_004551413.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6365 IS66 Orf2 family protein
YP_004551414.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_5516 transposase IS3/IS911 family protein
YP_004551415.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rle:RL4478 LysR family transcriptional regulator
YP_004551416.1	TIGRFAM: Dehydroquinase, class II; KEGG: rlt:Rleg2_3467 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II
YP_004551417.1	KEGG: rlg:Rleg_4011 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_004551418.1	KEGG: rle:RL4476 TRAP family transmembrane transporter protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004551419.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rlg:Rleg_4009 C4-dicarboxylate transport system
YP_004551420.1	PFAM: ABC transporter-like; KEGG: sil:SPO1823 sugar ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004551421.1	PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: dfe:Dfer_5338 type I phosphodiesterase/nucleotide pyrophosphatase
YP_004551422.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_3892 LysR family transcriptional regulator
YP_004551423.1	KEGG: bbr:BB1045 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004551424.1	KEGG: axy:AXYL_04811 phosphonopyruvate hydrolase
YP_004551425.1	PFAM: Endoribonuclease L-PSP; KEGG: jan:Jann_1654 endoribonuclease L-PSP
YP_004551426.1	PFAM: FAD dependent oxidoreductase; KEGG: bmj:BMULJ_05524 putative opine dehydrogenase
YP_004551427.1	KEGG: mes:Meso_1838 putative sarcosine oxidase alpha subunit
YP_004551428.1	PFAM: BFD-like [2Fe-2S]-binding domain; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; KEGG: pol:Bpro_4425 BFD-like (2Fe-2S)-binding region
YP_004551429.1	KEGG: rhi:NGR_c04820 FAD dependent oxidoreductase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004551430.1	manually curated; KEGG: ret:RHE_PA00059 insertion sequence transposase protein
YP_004551431.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_5572 methionine sulfoxide reductase A
YP_004551432.1	PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Methionine sulphoxide reductase B; KEGG: smd:Smed_5573 methionine sulfoxide reductase B
YP_004551433.1	KEGG: smd:Smed_5574 LysR family transcriptional regulator; manually curated; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding
YP_004551434.1	PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: gdj:Gdia_3158 NAD-dependent epimerase/dehydratase
YP_004551435.1	KEGG: rhi:NGR_b05640 putative cytoplasmic protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004551436.1	PFAM: Cupin 2, conserved barrel; KEGG: rhi:NGR_b05650 cupin domain protein
YP_004551437.1	KEGG: bja:blr6977 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004551438.1	KEGG: smd:Smed_5431 phage integrase family protein
YP_004551439.1	PFAM: TfuA-like, core; KEGG: pde:Pden_3471 TfuA domain-containing protein
YP_004551440.1	manually curated; TIGRFAM: YcaO-like; KEGG: scl:sce7124 hypothetical protein; PFAM: YcaO-like
YP_004551441.1	KEGG: scl:sce0539 hypothetical protein
YP_004551442.1	KEGG: rlt:Rleg2_6475 adenylate/guanylate cyclase with TPR repeats; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif, type 1; SMART: Sterile alpha motif domain; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551443.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tau:Tola_1641 NADP oxidoreductase coenzyme F420-dependent
YP_004551444.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_4522 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004551445.1	PFAM: Protein of unknown function DUF159; KEGG: ret:RHE_PF00147 hypothetical protein
YP_004551446.1	KEGG: ret:RHE_PF00150 hypothetical protein
YP_004551447.1	manually curated; KEGG: rlt:Rleg2_5158 putative nucleotidyltransferase protein
YP_004551448.1	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: rlt:Rleg2_5159 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic acid binding, OB-fold, tRNA/helicase-type; PHP, C-terminal
YP_004551449.1	KEGG: rhi:NGR_b15140 hypothetical protein
YP_004551450.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: bbt:BBta_p0270 hypothetical protein
YP_004551451.1	PFAM: Antirestriction protein; KEGG: mes:Meso_3822 antirestriction protein
YP_004551452.1	KEGG: rlt:Rleg2_4925 hypothetical protein
YP_004551453.1	KEGG: oan:Oant_4738 hypothetical protein
YP_004551454.1	PFAM: Protein of unknown function DUF1173; KEGG: ret:RHE_PD00156 hypothetical protein
YP_004551456.1	KEGG: rle:pRL70011 hypothetical protein
YP_004551457.1	KEGG: rlt:Rleg2_6192 hypothetical protein
YP_004551458.1	PFAM: Protein of unknown function DUF2493; KEGG: rhi:NGR_b10420 hypothetical protein
YP_004551459.1	KEGG: rhi:NGR_b10460 hypothetical protein
YP_004551460.1	KEGG: rlt:Rleg2_6195 hypothetical protein
YP_004551461.1	KEGG: rhi:NGR_b10470 hypothetical protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004551462.1	PFAM: Protein of unknown function DUF736; KEGG: rec:RHECIAT_PB0000177 hypothetical protein
YP_004551463.1	KEGG: oan:Oant_4762 hypothetical protein
YP_004551464.1	KEGG: xau:Xaut_4997 hypothetical protein
YP_004551465.1	KEGG: ret:RHE_PD00167 conjugal transfer coupling protein TraG; TIGRFAM: Ti-type conjugative transfer system, TraG; PFAM: Ti-type conjugative transfer system, TraG-like
YP_004551466.1	PFAM: Conjugal transfer, TraD, alpha-type; KEGG: rhi:NGR_b10530 TraD conjugal transfer protein
YP_004551467.1	PFAM: TraC-like; KEGG: atu:Atu5110 conjugal transfer protein
YP_004551468.1	PFAM: Mechanosensitive ion channel MscS; KEGG: rhi:NGR_b12230 probable small-conductance mechanosensitive channel transmembrane protein
YP_004551469.1	PFAM: Secretion protein HlyD; KEGG: rhi:NGR_c18700 hypothetical protein
YP_004551470.1	KEGG: rhi:NGR_c18690 hypothetical protein
YP_004551471.1	PFAM: Protein of unknown function DUF2950; KEGG: smd:Smed_5200 hypothetical protein
YP_004551472.1	PFAM: Protein of unknown function DUF3300; KEGG: rhi:NGR_b00400 hypothetical protein
YP_004551473.1	KEGG: smd:Smed_5634 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004551474.1	manually curated; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; KEGG: smd:Smed_5633 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004551475.1	PFAM: Sulfatase; KEGG: rlg:Rleg_6900 sulfatase
YP_004551476.1	KEGG: rlg:Rleg_6899 hypothetical protein
YP_004551478.1	TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: smd:Smed_5042 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20
YP_004551479.1	KEGG: smd:Smed_5412 hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA
YP_004551480.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5040 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551481.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5039 binding-protein-dependent transport systems inner membrane component
YP_004551482.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5038 binding-protein-dependent transport systems inner membrane component
YP_004551483.1	manually curated; KEGG: smd:Smed_5419 hypothetical protein
YP_004551484.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5778 GCN5-related N-acetyltransferase
YP_004551485.1	KEGG: smd:Smed_5779 hypothetical protein
YP_004551486.1	KEGG: smd:Smed_5780 hypothetical protein
YP_004551487.1	KEGG: smd:Smed_5781 response regulator receiver protein; PFAM: Transcription factor LuxR-like, autoinducer-binding domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004551488.1	KEGG: rec:RHECIAT_PC0000881 hypothetical protein
YP_004551489.1	KEGG: ara:Arad_14182 putative autoinducer synthesis protein; PFAM: Autoinducer synthesis protein
YP_004551490.1	PFAM: Transcription regulator IclR, N-terminal; KEGG: rhi:NGR_b15100 amino-terminus of predicted integrase/transposase
YP_004551491.1	PFAM: Integrase, catalytic core; KEGG: bja:bll5000 putative transposase
YP_004551492.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004551493.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6422 integrase catalytic region
YP_004551494.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_004551495.1	KEGG: mlo:mll1856 hypothetical protein
YP_004551496.1	PFAM: PilT protein, N-terminal; KEGG: pde:Pden_0483 PilT domain-containing protein
YP_004551497.1	KEGG: pde:Pden_0482 SpoVT/AbrB domain-containing protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted
YP_004551498.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5812 LysR family transcriptional regulator
YP_004551499.1	KEGG: rlt:Rleg2_0972 hypothetical protein
YP_004551500.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rle:pRL100447 LysR family transcriptional regulator
YP_004551501.1	KEGG: rlt:Rleg2_4576 putative oxidoreductase; manually curated; PFAM: NADP-dependent oxidoreductase domain
YP_004551502.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: ret:RHE_PF00143 putative tautomerase protein
YP_004551503.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PF00144 3-oxoacyl-[acyl-carrier-protein] reductase protein; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004551504.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ret:RHE_PF00145 LysR family transcriptional regulator
YP_004551505.1	KEGG: smd:Smed_3631 hypothetical protein
YP_004551506.1	KEGG: smd:Smed_5733 GCN5-related N-acetyltransferase
YP_004551507.1	KEGG: bbt:BBta_6006 hypothetical protein
YP_004551508.1	KEGG: bmr:BMI_II269 nitrous oxide reductase regulatory protein NosR; PFAM: FMN-binding; SMART: FMN-binding
YP_004551509.1	KEGG: smd:Smed_5247 nitric oxide dioxygenase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Globin, subset
YP_004551510.1	KEGG: rlg:Rleg_5036 hypothetical protein
YP_004551511.1	KEGG: rsq:Rsph17025_2399 hypothetical protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif
YP_004551512.1	PFAM: Copper resistance protein CopC, core; Copper resistance D; KEGG: mlo:mll3323 hypothetical protein
YP_004551513.1	PFAM: GLE1, N-terminal, bacteria; KEGG: rhi:NGR_b06120 hypothetical protein
YP_004551514.1	KEGG: smd:Smed_5917 hypothetical protein
YP_004551515.1	KEGG: smd:Smed_5927 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_004551516.1	KEGG: smd:Smed_5928 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type
YP_004551517.1	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_5929 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004551518.1	PFAM: FixH; KEGG: rhi:NGR_c17920 putative nitrogen fixation protein FixH
YP_004551519.1	TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: smd:Smed_5931 cytochrome c oxidase cbb3 type accessory protein FixG
YP_004551520.1	KEGG: smd:Smed_6265 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I
YP_004551521.1	KEGG: smd:Smed_6266 Cbb3-type cytochrome oxidase component
YP_004551522.1	KEGG: smd:Smed_6267 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO
YP_004551523.1	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: smd:Smed_6268 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_004551524.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_6269 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004551525.1	KEGG: smd:Smed_6270 transcriptional regulator FixK; PFAM: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_004551526.1	KEGG: smd:Smed_5937 response regulator receiver protein
YP_004551527.1	KEGG: smd:Smed_6273 response regulator FixJ; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004551528.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: smd:Smed_6274 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004551529.1	KEGG: smd:Smed_5182 NapC/NirT family periplasmic nitrate (or nitrite) reductase C-type cytochrome; TIGRFAM: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT; PFAM: NapC/NirT cytochrome c, N-terminal
YP_004551530.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: rhi:NGR_c10030 NapB periplasmic nitrate reductase
YP_004551531.1	SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, large subunit, periplasmic; Twin-arginine translocation pathway, signal sequence; KEGG: smd:Smed_5180 nitrate reductase catalytic subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain
YP_004551532.1	PFAM: Chaperone NapD, nitrate reductase assembly; KEGG: smd:Smed_5179 NapD family protein
YP_004551533.1	KEGG: smd:Smed_5178 ferredoxin-type protein NapF; TIGRFAM: Ferredoxin-type protein NapF; PFAM: 4Fe-4S binding domain
YP_004551534.1	KEGG: rhi:NGR_c09990 NapE component of periplasmic nitrate reductase; TIGRFAM: Nitrate reductas, NapE, periplasmic; PFAM: Nitrate/trimethylamine N-oxide reductase NapE/TorE
YP_004551535.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rec:RHECIAT_CH0002906 probable transcriptional regulator protein, TetR family
YP_004551536.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rec:RHECIAT_CH0002907 putative antibiotic resistance permease protein
YP_004551537.1	TIGRFAM: ATPase, P-type DNA transfer, VirB11; PFAM: Type II secretion system protein E; KEGG: ret:RHE_PD00153 transport secretion system IV, VirB11 protein; SMART: ATPase, AAA+ type, core
YP_004551538.1	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: atu:Atu5171 type IV secretion protein AvhB10
YP_004551539.1	KEGG: rec:RHECIAT_PB0000167 transport secretion system IV protein, VirB9; TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer, TrbG/VirB9/CagX
YP_004551540.1	PFAM: VirB8; KEGG: rec:RHECIAT_PC0000903 transport secretion system IV protein, VirB8
YP_004551541.1	KEGG: xau:Xaut_5082 putative type IV secretion system protein VirB7
YP_004551542.1	PFAM: Conjugal transfer, TrbL/VirB6; KEGG: rec:RHECIAT_PB0000164 transport secretion system IV protein, VirB6
YP_004551543.1	KEGG: rec:RHECIAT_PC0000906 hypothetical protein
YP_004551544.1	KEGG: atu:Atu5166 type IV secretion protein AvhB5; TIGRFAM: P-type DNA transfer protein VirB5; PFAM: Type IV secretion system
YP_004551545.1	TIGRFAM: CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; KEGG: xau:Xaut_5086 type IV secretion/conjugal transfer ATPase; SMART: ATPase, AAA+ type, core
YP_004551546.1	PFAM: Type IV secretion system, VirB3 / TrbD / AvhB; KEGG: atu:Atu5164 type IV secretion protein AvhB3
YP_004551547.1	PFAM: Conjugal transfer,TrbC; KEGG: atu:Atu5163 type IV secretion protein AvhB2
YP_004551548.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: rec:RHECIAT_PC0000911 transport secretion system IV protein, VirB1
YP_004551549.1	KEGG: ret:RHE_PD00142 hypothetical protein
YP_004551550.1	KEGG: rhi:NGR_b10230 hypothetical protein
YP_004551551.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: smd:Smed_5058 deaminase-reductase domain-containing protein
YP_004551552.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_5059 alpha/beta hydrolase fold
YP_004551553.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nha:Nham_0715 general substrate transporter
YP_004551554.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_5853 peptidase M24
YP_004551555.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_5854 cupin 2 domain-containing protein
YP_004551556.1	PFAM: TIM-barrel signal transduction protein, predicted; KEGG: smd:Smed_5855 hypothetical protein
YP_004551557.1	PFAM: Uncharacterised protein family UPF0261; KEGG: smd:Smed_5856 hypothetical protein
YP_004551558.1	KEGG: smd:Smed_5857 TetR family transcriptional regulator; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004551559.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_5858 extracellular solute-binding protein
YP_004551560.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5859 binding-protein-dependent transport systems inner membrane component
YP_004551561.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5860 binding-protein-dependent transport systems inner membrane component
YP_004551562.1	KEGG: smd:Smed_5861 hypothetical protein
YP_004551563.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_5862 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551564.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_5863 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551565.1	KEGG: smd:Smed_5864 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004551566.1	KEGG: smd:Smed_5865 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551567.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5866 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004551568.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5867 xylose isomerase domain-containing protein
YP_004551569.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_5868 xylose isomerase domain-containing protein
YP_004551570.1	PFAM: Domain of unknown function DUF1206; KEGG: rec:RHECIAT_PC0000073 hypothetical protein
YP_004551571.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_5267 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004551572.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: smd:Smed_5231 helix-turn-helix domain-containing protein
YP_004551573.1	KEGG: smd:Smed_5230 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004551574.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_1340 hypothetical protein
YP_004551575.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tra:Trad_2877 binding-protein-dependent transport systems inner membrane component
YP_004551576.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msv:Mesil_2791 binding-protein-dependent transport systems inner membrane component
YP_004551577.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0630 extracellular solute-binding protein family 1
YP_004551578.1	KEGG: smd:Smed_5077 ABC transporter related; manually curated; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004551579.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_5062 hypothetical protein
YP_004551580.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5063 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004551581.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5064 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004551582.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5065 binding-protein-dependent transport systems inner membrane component
YP_004551583.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5066 binding-protein-dependent transport systems inner membrane component
YP_004551584.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5067 extracellular solute-binding protein
YP_004551585.1	PFAM: Amidase; KEGG: smd:Smed_5068 amidase
YP_004551586.1	KEGG: smd:Smed_5069 hypothetical protein
YP_004551587.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5070 extracellular solute-binding protein
YP_004551588.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_5071 BFD/(2Fe-2S)-binding domain-containing protein
YP_004551589.1	PFAM: Ferredoxin; KEGG: smd:Smed_5072 ferredoxin
YP_004551590.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5073 FAD dependent oxidoreductase
YP_004551591.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5074 LysR family transcriptional regulator
YP_004551592.1	KEGG: smd:Smed_2533 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004551593.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: rde:RD1_0502 hypothetical protein
YP_004551594.1	PFAM: Protein of unknown function DUF993; KEGG: rde:RD1_0503 hypothetical protein
YP_004551595.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rde:RD1_0504 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004551596.1	KEGG: apt:APA01_05710 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004551597.1	KEGG: rde:RD1_0506 oxidoreductase, putative; PFAM: NADP-dependent oxidoreductase domain
YP_004551598.1	KEGG: apt:APA01_05700 glycerate dehydrogenase; PFAM: MOFRL domain
YP_004551599.1	PFAM: Crotonase, core; KEGG: rde:RD1_0509 putative enoyl-CoA hydratase/isomerase family protein
YP_004551600.1	KEGG: rde:RD1_0510 propionate CoA-transferase; PFAM: Coenzyme A transferase; SMART: Coenzyme A transferase
YP_004551601.1	KEGG: rde:RD1_0511 2,5-diketo-D-gluconic acid reductase B, putative; PFAM: NADP-dependent oxidoreductase domain
YP_004551602.1	KEGG: rhi:NGR_b10150 hypothetical protein
YP_004551603.1	PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; KEGG: rhi:NGR_b10140 hypothetical protein
YP_004551604.1	KEGG: gdj:Gdia_2223 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004551605.1	KEGG: apt:APA01_05810 aldehyde/L-sorbosone dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551606.1	KEGG: gdj:Gdia_2220 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004551607.1	PFAM: ABC transporter permease; KEGG: bpy:Bphyt_4187 monosaccharide-transporting ATPase
YP_004551608.1	PFAM: ABC transporter-like; KEGG: bpy:Bphyt_4186 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551609.1	PFAM: ABC transporter permease; KEGG: bpy:Bphyt_4185 monosaccharide-transporting ATPase
YP_004551610.1	KEGG: gdj:Gdia_2379 hypothetical protein
YP_004551611.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rde:RD1_0515 TetR family transcriptional regulator
YP_004551612.1	PFAM: Alcohol dehydrogenase, C-terminal; KEGG: pjd:Pjdr2_5125 alcohol dehydrogenase zinc-binding domain protein
YP_004551613.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3874 hypothetical protein
YP_004551614.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5077 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551615.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5078 binding-protein-dependent transport systems inner membrane component
YP_004551616.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5079 binding-protein-dependent transport systems inner membrane component
YP_004551617.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5080 extracellular solute-binding protein
YP_004551618.1	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: smd:Smed_5081 5-dehydro-4-deoxyglucarate dehydratase
YP_004551619.1	KEGG: smd:Smed_5082 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551620.1	KEGG: smd:Smed_5246 hypothetical protein
YP_004551621.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_5083 major facilitator transporter
YP_004551622.1	KEGG: ret:RHE_PB00086 hypothetical protein
YP_004551623.1	TIGRFAM: Thiolase; KEGG: smd:Smed_5096 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004551624.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5097 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004551625.1	KEGG: smd:Smed_5098 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551626.1	PFAM: RES; KEGG: smd:Smed_5099 RES domain-containing protein
YP_004551627.1	KEGG: smd:Smed_5100 hypothetical protein
YP_004551628.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: smd:Smed_5101 malate/L-lactate dehydrogenase
YP_004551629.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_5102 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004551630.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_5103 substrate-binding region of ABC-type glycine betaine transport system
YP_004551631.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5104 binding-protein-dependent transport systems inner membrane component
YP_004551632.1	SMART: ATPase, AAA+ type, core; Cystathionine beta-synthase, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: smd:Smed_5105 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core
YP_004551633.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5106 binding-protein-dependent transport systems inner membrane component
YP_004551634.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_5107 isochorismatase hydrolase
YP_004551635.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: smd:Smed_5108 peptidase M24
YP_004551636.1	KEGG: smd:Smed_5109 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551637.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_5110 trimethylamine methyltransferase
YP_004551638.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5111 LysR family transcriptional regulator
YP_004551639.1	KEGG: smd:Smed_5112 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004551640.1	KEGG: azc:AZC_3273 hypothetical protein
YP_004551641.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rle:pRL110158 putative transcription regulatory protein
YP_004551642.1	PFAM: Cytochrome c, class I; KEGG: ccs:CCNA_01704 cytochrome c
YP_004551643.1	KEGG: bbt:BBta_2288 putative isoquinoline 1-oxidoreductase beta subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
YP_004551644.1	KEGG: bbt:BBta_2287 isoquinoline 1-oxidoreductase alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004551645.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bja:bll6530 transcriptional regulator
YP_004551646.1	KEGG: smd:Smed_1341 hypothetical protein
YP_004551647.1	KEGG: smd:Smed_5312 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004551648.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_5869 glutathione S-transferase domain-containing protein
YP_004551649.1	KEGG: smd:Smed_5870 ferredoxin; PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Rieske [2Fe-2S] iron-sulphur domain; Oxidoreductase FAD/NAD(P)-binding
YP_004551650.1	KEGG: smd:Smed_5871 hypothetical protein
YP_004551651.1	KEGG: mms:mma_1671 hypothetical protein
YP_004551652.1	KEGG: smd:Smed_5872 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551653.1	PFAM: Basic membrane lipoprotein; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; KEGG: smd:Smed_5873 basic membrane lipoprotein
YP_004551654.1	PFAM: ABC transporter-like; KEGG: smd:Smed_5874 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551655.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5875 inner-membrane translocator
YP_004551656.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5876 inner-membrane translocator
YP_004551657.1	KEGG: rhi:NGR_b02550 hypothetical protein
YP_004551658.1	KEGG: smd:Smed_3614 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_004551659.1	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: smd:Smed_3615 NADH-quinone oxidoreductase, chain I
YP_004551660.1	KEGG: smd:Smed_3616 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004551661.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: smd:Smed_3617 molybdopterin oxidoreductase; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain
YP_004551662.1	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: smd:Smed_3618 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain
YP_004551663.1	TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: smd:Smed_3619 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_004551664.1	PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, subunit D; HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: smd:Smed_3620 NADH dehydrogenase I, D subunit
YP_004551665.1	TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: smd:Smed_3621 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit
YP_004551666.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: smd:Smed_3622 NADH dehydrogenase subunit B
YP_004551667.1	KEGG: smd:Smed_3623 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004551668.1	TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: smd:Smed_3624 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004551669.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: smd:Smed_3625 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004551670.1	KEGG: smd:Smed_3626 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004551671.1	KEGG: smd:Smed_3627 hypothetical protein
YP_004551672.1	KEGG: smd:Smed_3628 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004551673.1	KEGG: smd:Smed_3629 NADH-ubiquinone oxidoreductase chain 4L; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_004551674.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: smd:Smed_3630 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004551675.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rhi:NGR_c14200 probable protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004551676.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold-4; Diguanylate cyclase, predicted; PAS fold-3; KEGG: smd:Smed_5113 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif
YP_004551677.1	KEGG: smd:Smed_5114 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004551678.1	PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; KEGG: smd:Smed_5115 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type
YP_004551679.1	KEGG: smd:Smed_5116 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein
YP_004551680.1	KEGG: smd:Smed_5117 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004551681.1	KEGG: smd:Smed_5118 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver domain; CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheW-like protein
YP_004551682.1	KEGG: smd:Smed_5119 response regulator receiver modulated CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase
YP_004551683.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_5120 type II secretion system protein
YP_004551684.1	PFAM: Type II secretion system F domain; KEGG: smd:Smed_5121 type II secretion system protein
YP_004551685.1	PFAM: Type II secretion system protein E; KEGG: smd:Smed_5122 type II secretion system protein E
YP_004551686.1	PFAM: Flp/Fap pilin component; KEGG: smd:Smed_5123 Flp/Fap pilin component
YP_004551687.1	PFAM: TadE-like; KEGG: smd:Smed_5124 TadE family protein
YP_004551688.1	PFAM: TadE-like; Cobyrinic acid a,c-diamide synthase; Signal transduction response regulator, receiver domain; KEGG: smd:Smed_5125 response regulator receiver protein
YP_004551689.1	TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: smd:Smed_5126 SAF domain-containing protein; SMART: SAF domain
YP_004551690.1	PFAM: Peptidase A24A, prepilin type IV; KEGG: smd:Smed_5127 peptidase A24A prepilin type IV
YP_004551691.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: smd:Smed_5128 hypothetical protein
YP_004551692.1	KEGG: smd:Smed_5129 hypothetical protein
YP_004551693.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_4436 MscS mechanosensitive ion channel
YP_004551694.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR-1; KEGG: mlo:mll3276 adenylate cyclase Cya3; SMART: Tetratricopeptide repeat; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004551695.1	KEGG: aca:ACP_0351 hypothetical protein
YP_004551696.1	PFAM: Transposase IS3/IS911family; KEGG: rhi:NGR_b01500 probable SyrB-like regulator
YP_004551697.1	PFAM: Glycoside hydrolase, family 16; Haemolysin-type calcium-binding repeat; KEGG: rhi:NGR_b15690 endo-1,3-1,4-beta-glycanase ExsH
YP_004551698.1	KEGG: smd:Smed_3955 hypothetical protein
YP_004551699.1	PFAM: Protein of unknown function DUF1486; KEGG: avi:Avi_1135 hypothetical protein
YP_004551700.1	KEGG: smd:Smed_1683 sterile alpha motif-containing protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif, type 1; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Sterile alpha motif domain
YP_004551701.1	PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: rhi:NGR_b12550 putative oxidoreductase
YP_004551702.1	KEGG: smd:Smed_5510 putative fimbrial chaperone protein
YP_004551703.1	KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004551704.1	KEGG: rva:Rvan_2259 potassium efflux system protein; manually curated; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal
YP_004551705.1	KEGG: smd:Smed_6327 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_004551706.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ach:Achl_0479 NmrA family protein
YP_004551707.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rlg:Rleg_2547 transcriptional regulator, LysR family
YP_004551708.1	PFAM: Protein of unknown function DUF924; KEGG: vap:Vapar_2217 protein of unknown function DUF924
YP_004551709.1	KEGG: rle:pRL120292 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551710.1	KEGG: smd:Smed_0367 hypothetical protein
YP_004551711.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_0366 LysR family transcriptional regulator
YP_004551712.1	KEGG: rlg:Rleg_5863 hypothetical protein
YP_004551713.1	KEGG: smd:Smed_5303 hypothetical protein
YP_004551714.1	KEGG: smd:Smed_5302 hypothetical protein
YP_004551715.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_004551716.1	KEGG: smd:Smed_5613 hypothetical protein
YP_004551717.1	PFAM: Protein of unknown function DUF156; KEGG: smd:Smed_5612 hypothetical protein
YP_004551718.1	KEGG: smd:Smed_5611 major facilitator transporter; TIGRFAM: Drug antiporter protein; PFAM: Major facilitator superfamily MFS-1
YP_004551719.1	PFAM: Nickel/cobalt transporter, high-affinity; KEGG: smd:Smed_5609 high-affinity nickel-transporter
YP_004551720.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5623 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004551721.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5622 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like
YP_004551722.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5621 binding-protein-dependent transport systems inner membrane component
YP_004551723.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5620 binding-protein-dependent transport systems inner membrane component
YP_004551724.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5619 extracellular solute-binding protein
YP_004551725.1	KEGG: bbt:BBta_3768 putative hydantoin-racemase; PFAM: Asp/Glu/hydantoin racemase
YP_004551726.1	KEGG: atu:Atu4703 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004551727.1	KEGG: smd:Smed_5617 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004551728.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5244 GCN5-related N-acetyltransferase
YP_004551729.1	KEGG: rhi:NGR_c28570 Acr/RND family efflux transmembrane transporter; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_004551730.1	KEGG: rhi:NGR_c28560 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004551731.1	PFAM: Uncharacterised protein family UPF0114; KEGG: rhi:NGR_c28550 hypothetical protein
YP_004551732.1	KEGG: rhi:NGR_c28540 amino acid/polyamine transporter I; TIGRFAM: Amino acid antiporter; PFAM: Amino acid permease domain
YP_004551733.1	KEGG: rhi:NGR_c28530 arginine/ornithine antiporter; TIGRFAM: Amino acid antiporter; PFAM: Amino acid permease domain
YP_004551734.1	TIGRFAM: Arginine deiminase; KEGG: rhi:NGR_c28520 arginine deiminase; PFAM: Amidinotransferase
YP_004551735.1	KEGG: rhi:NGR_c28510 hypothetical protein
YP_004551736.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: mlo:mlr6724 hypothetical protein
YP_004551737.1	KEGG: mlo:msr8479 hypothetical protein
YP_004551738.1	KEGG: mlo:mll6729 hypothetical protein
YP_004551739.1	PFAM: Uncharacterised protein family UPF0118; KEGG: oan:Oant_2449 hypothetical protein
YP_004551740.1	PFAM: Amidohydrolase 1; KEGG: smd:Smed_5232 amidohydrolase
YP_004551741.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: smd:Smed_5769 NapD-like protein
YP_004551742.1	PFAM: Sulfatase; KEGG: smd:Smed_1239 sulfatase
YP_004551743.1	KEGG: rle:pRL110222 putative transmembrane two-component sensor histidine kinase transcriptional regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004551744.1	KEGG: smd:Smed_5633 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004551745.1	KEGG: smd:Smed_5632 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004551746.1	PFAM: Cation transporter; KEGG: smd:Smed_5285 cation transporter
YP_004551747.1	KEGG: smd:Smed_5742 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_004551748.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: rhi:NGR_b09790 hypothetical protein
YP_004551749.1	PFAM: Transposase, IS66; KEGG: rhi:NGR_b09780 putative insertion sequence transposase protein, IS66 family
YP_004551750.1	KEGG: rva:Rvan_3151 IS66 Orf2 family protein; manually curated; PFAM: Transposase (putative), IS66 Orf2-like
YP_004551751.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_004551752.1	PFAM: Transposase IS3/IS911family; KEGG: rhi:NGR_b01500 probable SyrB-like regulator
YP_004551753.1	KEGG: rhi:NGR_b01480 hypothetical protein
YP_004551754.1	KEGG: smd:Smed_5674 hypothetical protein
YP_004551756.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004551757.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_6057 MucR family transcriptional regulator
YP_004551758.1	KEGG: rlg:Rleg_5665 hypothetical protein
YP_004551759.1	PFAM: Ureohydrolase; KEGG: smd:Smed_5245 arginase/agmatinase/formiminoglutamase
YP_004551760.1	KEGG: aml:100474834 serine/arginine repetitive matrix 2
YP_004551761.1	TIGRFAM: Adenine deaminase; KEGG: smd:Smed_5277 adenine deaminase; PFAM: Amidohydrolase 1
YP_004551762.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: smd:Smed_5276 xanthine/uracil/vitamin C permease
YP_004551763.1	HAMAP: Adenine deaminase; KEGG: smd:Smed_5275 adenine deaminase; PFAM: Amidohydrolase 1
YP_004551764.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5274 LysR family transcriptional regulator
YP_004551765.1	KEGG: lma:LmjF36.2790 hypothetical protein
YP_004551766.1	PFAM: Isochorismatase-like; KEGG: smd:Smed_2598 isochorismatase hydrolase
YP_004551767.1	KEGG: smd:Smed_2599 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551768.1	KEGG: atu:Atu2059 TetR family transcriptional regulator; TIGRFAM: Transcriptional repressor BetI; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004551769.1	KEGG: smd:Smed_5449 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_004551770.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: rhi:NGR_c07950 hypothetical amino acid ABC-transporter permease protein
YP_004551771.1	KEGG: rsq:Rsph17025_2311 betaine aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551772.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gym:GYMC10_1269 Rieske (2Fe-2S) iron-sulphur domain protein
YP_004551773.1	KEGG: bac:BamMC406_5014 oxidoreductase FAD-binding subunit; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding
YP_004551774.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: rhi:NGR_c21830 transcriptional regulator, LysR family
YP_004551775.1	PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: rlg:Rleg_6722 siderophore-interacting protein
YP_004551776.1	PFAM: ABC transporter-like; KEGG: ske:Sked_19110 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; SMART: ATPase, AAA+ type, core
YP_004551777.1	PFAM: ABC transporter permease protein; KEGG: oan:Oant_2825 transport system permease protein
YP_004551778.1	PFAM: ABC transporter permease protein; KEGG: oan:Oant_2826 transport system permease protein
YP_004551779.1	PFAM: Periplasmic binding protein; KEGG: oan:Oant_2827 periplasmic binding protein
YP_004551780.1	KEGG: pde:Pden_3521 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_004551781.1	KEGG: oan:Oant_2830 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551783.1	KEGG: smd:Smed_5214 hypothetical protein
YP_004551784.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3714 binding-protein-dependent transport systems inner membrane component
YP_004551785.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bcs:BCAN_B0330 binding-protein-dependent transport systems inner membrane component
YP_004551786.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: bcs:BCAN_B0329 polyamine ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004551787.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bmr:BMI_II321 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative
YP_004551788.1	KEGG: atu:Atu3301 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551789.1	KEGG: azl:AZL_b03940 transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal
YP_004551790.1	PFAM: Aminoglycoside phosphotransferase; KEGG: mlo:mlr7168 homoserine kinase
YP_004551791.1	KEGG: vap:Vapar_5225 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_004551792.1	PFAM: Protein of unknown function DUF937; KEGG: smd:Smed_4857 hypothetical protein
YP_004551793.1	PFAM: Transglycosylase-associated protein; KEGG: smd:Smed_4856 transglycosylase-associated protein
YP_004551794.1	KEGG: rle:RL1210 hypothetical protein
YP_004551795.1	KEGG: smd:Smed_4843 hypothetical protein
YP_004551796.1	PFAM: Integrase, catalytic core; KEGG: rhi:NGR_a01740 putative transposase number 1 of insertion sequence NGRIS-23a
YP_004551797.1	KEGG: smd:Smed_5273 hypothetical protein
YP_004551798.1	KEGG: mbr:MONBRDRAFT_7068 hypothetical protein
YP_004551799.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: rhi:NGR_b16810 hypothetical protein
YP_004551800.1	KEGG: ara:Arad_4457 3-oxoacyl-(acyl-carrier-protein) reductase protein
YP_004551801.1	PFAM: Transmembrane pair, bacterial; KEGG: smd:Smed_4434 transmembrane pair domain-containing protein
YP_004551802.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4433 LysR family transcriptional regulator
YP_004551803.1	KEGG: mes:Meso_2195 alpha/beta hydrolase fold
YP_004551804.1	KEGG: rva:Rvan_1248 hypothetical protein
YP_004551805.1	KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core
YP_004551806.1	manually curated; KEGG: rhi:NGR_a02210 putative transposase number 1 of degenerate insertion sequence
YP_004551807.1	KEGG: rhi:NGR_a02220 putative transposase number 2 of degenerate insertion sequence
YP_004551808.1	KEGG: rhi:NGR_b16790 putative transposase number 4 for insertion sequence NGRIS-4i; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004551809.1	KEGG: mlo:mlr2839 hypothetical protein
YP_004551810.1	KEGG: smd:Smed_5299 hypothetical protein
YP_004551811.1	KEGG: rlg:Rleg_0865 hypothetical protein
YP_004551812.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_004551813.1	PFAM: K+ potassium transporter; KEGG: smd:Smed_6370 K potassium transporter
YP_004551814.1	KEGG: smd:Smed_0771 hypothetical protein
YP_004551815.1	KEGG: rhi:NGR_b15880 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_004551816.1	KEGG: atu:Atu5085 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004551817.1	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: rhi:NGR_b15890 putative MFS family transporter
YP_004551818.1	PFAM: Uncharacterised protein family YphA; KEGG: rhi:NGR_b15900 DoxX
YP_004551819.1	PFAM: Amidohydrolase 3; KEGG: rhi:NGR_b15910 putative periplasmic protein
YP_004551820.1	KEGG: rhi:NGR_b15920 hypothetical protein; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427
YP_004551821.1	PFAM: Isochorismatase-like; KEGG: rhi:NGR_b15930 probable hydrolase
YP_004551822.1	KEGG: rhi:NGR_b15940 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551823.1	KEGG: rhi:NGR_b15950 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551824.1	KEGG: rhi:NGR_b15960 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004551825.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rhi:NGR_b15970 putative LysR family transcriptional regulator
YP_004551826.1	KEGG: smd:Smed_6326 putative L-sorbosone dehydrogenase
YP_004551827.1	KEGG: smd:Smed_5606 GCN5-related N-acetyltransferase
YP_004551828.1	TIGRFAM: Acetylornithine deacetylase (ArgE); KEGG: smd:Smed_5605 acetylornithine deacetylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004551829.1	KEGG: smd:Smed_5604 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_004551830.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: smd:Smed_5603 protein of unknown function DUF861 cupin_3
YP_004551831.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_5602 aldehyde dehydrogenase
YP_004551832.1	TIGRFAM: Tartrate dehydrogenase; KEGG: smd:Smed_5601 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004551833.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551834.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5599 FAD dependent oxidoreductase
YP_004551835.1	TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: smd:Smed_5598 haloacid dehalogenase, type II
YP_004551836.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_5597 GCN5-related N-acetyltransferase
YP_004551837.1	KEGG: smd:Smed_5596 hypothetical protein; PFAM: Aminotransferase class-III
YP_004551838.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5594 extracellular solute-binding protein
YP_004551839.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5593 binding-protein-dependent transport systems inner membrane component
YP_004551840.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5592 binding-protein-dependent transport systems inner membrane component
YP_004551841.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5591 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551842.1	KEGG: smd:Smed_5590 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004551843.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5589 FAD dependent oxidoreductase
YP_004551844.1	KEGG: rhi:NGR_b06500 ornithine cyclodeaminase 2; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_004551845.1	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: rhi:NGR_b06490 putative threonine dehydratase
YP_004551846.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pmx:PERMA_1145 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004551847.1	KEGG: sul:SYO3AOP1_0850 hypothetical protein
YP_004551848.1	KEGG: sli:Slin_0062 potassium-transporting ATPase, A subunit
YP_004551850.1	KEGG: wch:wcw_1962 hypothetical protein
YP_004551851.1	PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: aba:Acid345_0435 hypothetical protein
YP_004551852.1	KEGG: sus:Acid_3507 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_004551853.1	KEGG: rpe:RPE_0265 hypothetical protein
YP_004551854.1	KEGG: bja:bll2059 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_004551855.1	TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: bja:bll1200 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/classII
YP_004551856.1	PFAM: Copper chaperone SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase
YP_004551857.1	KEGG: afw:Anae109_2853 putative lipoprotein
YP_004551858.1	PFAM: Metallo-dependent phosphatase; KEGG: afw:Anae109_2854 metallophosphoesterase
YP_004551859.1	KEGG: afw:Anae109_2855 hypothetical protein
YP_004551860.1	PFAM: Flavocytochrome c sulphide dehydrogenase, flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pde:Pden_4158 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004551861.1	KEGG: xau:Xaut_1516 cytochrome c553-like protein
YP_004551862.1	PFAM: Sulphur oxidation protein SoxZ; KEGG: mag:amb0855 hypothetical protein
YP_004551863.1	KEGG: sno:Snov_0971 sulfur oxidation protein SoxY
YP_004551864.1	KEGG: bja:blr6977 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004551865.1	PFAM: Cupin 2, conserved barrel; KEGG: rhi:NGR_b05650 cupin domain protein
YP_004551866.1	PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: gdj:Gdia_3158 NAD-dependent epimerase/dehydratase
YP_004551867.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_b05740 putative transcriptional regulator, TetR family
YP_004551868.1	PFAM: Protein of unknown function DUF1127; KEGG: mno:Mnod_2193 protein of unknown function DUF1127
YP_004551869.1	TIGRFAM: Thioredoxin reductase; KEGG: rhi:NGR_b05720 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_004551870.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5574 LysR family transcriptional regulator
YP_004551871.1	PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Methionine sulphoxide reductase B; KEGG: smd:Smed_5573 methionine sulfoxide reductase B
YP_004551872.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: smd:Smed_5572 methionine sulfoxide reductase A
YP_004551873.1	KEGG: mdi:p2METDI0003 putative transcriptional regulator protein (AraC family)
YP_004551874.1	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: smd:Smed_5774 peptidase S8/S53 subtilisin kexin sedolisin
YP_004551875.1	KEGG: rhi:NGR_b23220 hypothetical protein
YP_004551876.1	PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; BA14K-like; manually curated; KEGG: rlt:Rleg2_0767 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A
YP_004551877.1	PFAM: Protein of unknown function DUF2934; KEGG: smd:Smed_5308 hypothetical protein
YP_004551878.1	KEGG: smd:Smed_5307 hypothetical protein
YP_004551879.1	KEGG: pan:PODANSg7585 hypothetical protein
YP_004551880.1	KEGG: smd:Smed_5306 hypothetical protein
YP_004551881.1	PFAM: Protein of unknown function DUF1488; KEGG: smd:Smed_5304 hypothetical protein
YP_004551882.1	TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: nhl:Nhal_2818 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA
YP_004551883.1	PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: met:M446_0502 TrkA domain-containing protein
YP_004551884.1	KEGG: smd:Smed_5303 hypothetical protein
YP_004551885.1	manually curated; KEGG: smd:Smed_5301 hypothetical protein
YP_004551886.1	KEGG: smd:Smed_5300 hypothetical protein
YP_004551887.1	KEGG: cjk:jk0110 methionine sulfoxide reductase A
YP_004551888.1	KEGG: mes:Meso_4397 hypothetical protein
YP_004551889.1	KEGG: smd:Smed_5284 hypothetical protein
YP_004551890.1	KEGG: rlg:Rleg_0688 hypothetical protein
YP_004551891.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5292 LysR family transcriptional regulator
YP_004551892.1	KEGG: smd:Smed_5291 TrpR binding protein WrbA; TIGRFAM: Flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase
YP_004551893.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bbr:BB1276 putative integral membrane protein
YP_004551894.1	KEGG: rlt:Rleg2_1649 hypothetical protein; PFAM: Monooxygenase, FAD-binding
YP_004551895.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5289 LysR family transcriptional regulator
YP_004551896.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_5288 hypothetical protein
YP_004551897.1	KEGG: smd:Smed_5716 hypothetical protein
YP_004551898.1	PFAM: Cyclic nucleotide-binding domain; KEGG: rhi:NGR_b05190 hypothetical protein
YP_004551899.1	KEGG: smd:Smed_0594 beta-lactamase; PFAM: Beta-lactamase-related
YP_004551900.1	manually curated; KEGG: smd:Smed_1460 beta-lactamase; PFAM: Beta-lactamase-related
YP_004551901.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_1461 LysR family transcriptional regulator
YP_004551902.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6340 transposase IS66
YP_004551903.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004551904.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004551905.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5282 LysR family transcriptional regulator
YP_004551906.1	KEGG: smd:Smed_5281 NmrA family protein
YP_004551907.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ara:Arad_0328 antibiotic resistance permease protein
YP_004551908.1	PFAM: Helix-turn-helix, HxlR type; KEGG: ara:Arad_0329 transcriptional regulator protein
YP_004551909.1	PFAM: Leucine carboxyl methyltransferase; KEGG: rhi:NGR_c34300 predicted polyketide synthesis O-methyltransferase, TcmP type protein
YP_004551910.1	KEGG: rhi:NGR_b14500 hypothetical protein
YP_004551911.1	KEGG: smd:Smed_3241 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004551912.1	KEGG: cwo:Cwoe_4202 hypothetical protein
YP_004551913.1	PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: smd:Smed_1404 glucosamine--fructose-6-phosphate aminotransferase
YP_004551914.1	KEGG: smd:Smed_6178 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004551915.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_6179 acriflavin resistance protein
YP_004551916.1	PFAM: MaoC-like dehydratase; KEGG: rlg:Rleg_4909 enoyl-CoA hydratase
YP_004551917.1	TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; KEGG: smd:Smed_6181 nitrogenase molybdenum-cofactor biosynthesis protein NifN; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004551918.1	PFAM: Transposase, IS66; KEGG: rhi:NGR_a01890 putative transposase of undefined mobile element
YP_004551919.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6197 transposase IS3/IS911 family protein
YP_004551920.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_6183 LysR family transcriptional regulator
YP_004551921.1	KEGG: smd:Smed_6184 acyltransferase NodA; HAMAP: Nodulation protein A, NodA; PFAM: Nodulation protein A, NodA
YP_004551922.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_6185 polysaccharide deacetylase
YP_004551923.1	KEGG: smd:Smed_6186 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; Fungal chitin synthase
YP_004551924.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Nodulation ABC transporter, NodI; KEGG: smd:Smed_6187 nodulation factor exporter subunit NodI; PFAM: ABC transporter-like
YP_004551925.1	KEGG: smd:Smed_6188 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter
YP_004551926.1	PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; Adenylylsulphate kinase, C-terminal; HAMAP: Adenylylsulphate kinase, C-terminal; Sulphate adenylyltransferase, large subunit; KEGG: smd:Smed_6191 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
YP_004551927.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: smd:Smed_6192 sulfate adenylyltransferase subunit 2
YP_004551928.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: smd:Smed_6193 3-ketoacyl-(acyl-carrier-protein) reductase NodG; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004551930.1	KEGG: smd:Smed_6194 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal
YP_004551931.1	PFAM: Phosphopantetheine-binding; KEGG: smd:Smed_6195 NodF acyl carrier protein
YP_004551932.1	KEGG: smd:Smed_6196 NodH sulfotransferase
YP_004551934.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6204 LysR family transcriptional regulator
YP_004551935.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004551936.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004551937.1	KEGG: ret:RHE_PD00313 insertion sequence transposase protein; manually curated; PFAM: Transposase IS3/IS911family
YP_004551938.1	PFAM: HTH transcriptional regulator, LysR; KEGG: smd:Smed_6212 LysR family transcriptional regulator
YP_004551939.1	KEGG: smd:Smed_6217 SyrA protein involved in EPS production
YP_004551940.1	KEGG: smd:Smed_6219 ferredoxin III 4(4Fe-4S) nif-specific; manually curated; TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific
YP_004551941.1	KEGG: smd:Smed_6221 nitrogen fixation protein NifX; TIGRFAM: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis
YP_004551942.1	KEGG: smd:Smed_6222 nitrogenase molybdenum-cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004551943.1	TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; KEGG: smd:Smed_6223 nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004551944.1	TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; KEGG: smd:Smed_6224 nitrogenase molybdenum-iron protein alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004551945.1	PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: smd:Smed_6225 nitrogenase reductase
YP_004551946.1	KEGG: smd:Smed_6226 hypothetical protein
YP_004551947.1	KEGG: smd:Smed_6228 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004551948.1	KEGG: smd:Smed_6229 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein, alpha subunit, C-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004551949.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_6230 FAD dependent oxidoreductase
YP_004551950.1	KEGG: smd:Smed_6231 FixX ferredoxin-like protein
YP_004551951.1	TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: smd:Smed_6232 transcriptional regulator NifA; SMART: GAF; ATPase, AAA+ type, core
YP_004551952.1	TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM; Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: smd:Smed_6233 nitrogenase cofactor biosynthesis protein NifB; SMART: Elongator protein 3/MiaB/NifB
YP_004551953.1	PFAM: 4Fe-4S binding domain; KEGG: smd:Smed_6234 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004551954.1	KEGG: smd:Smed_6235 NifT/FixU family protein; TIGRFAM: NifT/FixU; PFAM: NifT/FixU
YP_004551955.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004551956.1	KEGG: rhi:NGR_b01510 hypothetical protein
YP_004551957.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6244 transposase IS3/IS911 family protein
YP_004551958.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_6245 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551959.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_6246 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004551960.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6247 binding-protein-dependent transport systems inner membrane component
YP_004551961.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_6248 binding-protein-dependent transport systems inner membrane component
YP_004551962.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_6249 extracellular solute-binding protein
YP_004551963.1	PFAM: NIPSNAP; KEGG: smd:Smed_6250 NIPSNAP family protein
YP_004551964.1	KEGG: smd:Smed_6251 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004551965.1	PFAM: Luciferase-like, subgroup; KEGG: smd:Smed_6252 luciferase family protein
YP_004551966.1	KEGG: smd:Smed_6253 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004551967.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_6254 alpha/beta hydrolase fold
YP_004551968.1	PFAM: Protein of unknown function DUF1185; KEGG: smd:Smed_6255 hypothetical protein
YP_004551969.1	KEGG: smd:Smed_6257 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004551970.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004551971.1	manually curated; KEGG: ret:RHE_PA00059 insertion sequence transposase protein
YP_004551972.1	PFAM: Transposase, IS4-like; KEGG: rle:pRL70077 putative transposase
YP_004551973.1	PFAM: Sulfatase; KEGG: smd:Smed_6260 NoeB host specific nodulation protein
YP_004551974.1	PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: smd:Smed_6261 NoeA host specific nodulation protein
YP_004551975.1	KEGG: smd:Smed_6262 hypothetical protein
YP_004551976.1	KEGG: smd:Smed_6263 maltose O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_004551977.1	KEGG: rhi:NGR_c17910 nitrogen fixation protein FixI; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein
YP_004551978.1	KEGG: smd:Smed_6265 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I
YP_004551979.1	KEGG: smd:Smed_6266 Cbb3-type cytochrome oxidase component
YP_004551980.1	KEGG: smd:Smed_6267 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO
YP_004551981.1	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: smd:Smed_6268 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_004551982.1	KEGG: smd:Smed_6270 transcriptional regulator FixK; PFAM: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_004551983.1	KEGG: smd:Smed_5937 response regulator receiver protein
YP_004551984.1	KEGG: smd:Smed_6044 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004551985.1	PFAM: Reverse transcriptase; KEGG: fre:Franean1_3066 RNA-directed DNA polymerase (reverse transcriptase)
YP_004551986.1	PFAM: Transposase, mutator type; KEGG: ret:RHE_PA00118 putative insertion sequence transposase protein
YP_004551987.1	KEGG: rpe:RPE_1141 transposase, mutator type
YP_004551988.1	KEGG: sli:Slin_6987 RNA-directed DNA polymerase (reverse transcriptase); PFAM: Reverse transcriptase; Group II intron, maturase-specific
YP_004551989.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004551990.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004551991.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6340 transposase IS66
YP_004551992.1	KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core
YP_004551993.1	PFAM: Transposase, mutator type; KEGG: rpc:RPC_3939 transposase, mutator type
YP_004551994.1	KEGG: mgr:MGG_10129 hypothetical protein
YP_004551995.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_5941 LysR family transcriptional regulator
YP_004551997.1	KEGG: smd:Smed_4845 hypothetical protein
YP_004551998.1	KEGG: smd:Smed_1905 GcrA cell cycle regulator
YP_004551999.1	TIGRFAM: Thioredoxin reductase; KEGG: rhi:NGR_b05720 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_004552000.1	PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: sno:Snov_1412 ATP-NAD/AcoX kinase
YP_004552001.1	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: mdi:METDI4483 glutamate dehydrogenase (NAD(P)+) oxidoreductase protein; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
YP_004552002.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: hoh:Hoch_4359 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_004552003.1	KEGG: rpe:RPE_4533 nitrogenase reductase
YP_004552004.1	KEGG: smd:Smed_6226 hypothetical protein
YP_004552005.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Conserved hyprothetical protein CHP00238, KamA; KEGG: cst:CLOST_1382 L-lysine 2,3-aminomutase; PFAM: Radical SAM
YP_004552007.1	PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; KEGG: bph:Bphy_7633 D-alanine--D-alanine ligase
YP_004552008.1	KEGG: ath:AT5G53890 leucine-rich repeat transmembrane protein kinase, putative
YP_004552009.1	KEGG: bja:bll8229 hypothetical protein; PFAM: D-alanine--D-alanine ligase, C-terminal
YP_004552010.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2477 binding-protein-dependent transport systems inner membrane component
YP_004552011.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: tro:trd_0881 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004552012.1	PFAM: Transposase IS3/IS911family; KEGG: ara:Arad_9823 insertion sequence transposase protein
YP_004552013.1	PFAM: Integrase, catalytic core; KEGG: rle:RL0792 putative transposase
YP_004552014.1	PFAM: Transposase, IS4-like; KEGG: smd:Smed_6478 transposase
YP_004552015.1	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: oan:Oant_4364 MlrC domain-containing protein
YP_004552016.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rhi:NGR_a01400 probable peptide ABC transporter ATP-binding protein y4tS; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004552017.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rhi:NGR_a01410 probable peptide ABC transporter ATP-binding protein y4tR; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like
YP_004552018.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_a01420 probable peptide ABC transporter permease y4tQ
YP_004552019.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_a01430 probable peptide ABC transporter permease y4tP
YP_004552020.1	KEGG: rhi:NGR_a01440 probable periplasmic peptide binding protein y4tO of ABC-transporter; manually curated; PFAM: Bacterial extracellular solute-binding protein, family 5; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal
YP_004552021.1	PFAM: Ornithine cyclodeaminase/mu-crystallin; KEGG: jan:Jann_1530 ornithine cyclodeaminase
YP_004552022.1	TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: bmr:BMI_II775 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_004552023.1	KEGG: mes:Meso_3639 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004552024.1	PFAM: Crotonase, core; KEGG: bgf:BC1003_1335 enoyl-CoA hydratase/isomerase
YP_004552025.1	KEGG: smd:Smed_5473 regulatory protein IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004552026.1	KEGG: rpd:RPD_2367 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase
YP_004552027.1	KEGG: rpd:RPD_2368 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004552028.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mlo:mll6256 ABC transporter binding protein component
YP_004552029.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ddr:Deide_3p00700 putative succinylglutamate desuccinylase / aspartoacylase family
YP_004552030.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mlo:mll6256 ABC transporter binding protein component
YP_004552031.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2477 binding-protein-dependent transport systems inner membrane component
YP_004552032.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: bja:blr6644 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004552033.1	PFAM: Transposase IS3/IS911family; KEGG: rlg:Rleg_0726 transposase IS3/IS911 family protein
YP_004552034.1	PFAM: Integrase, N-terminal SAM-like, phage; KEGG: bja:bll2138 site-specific integrase/recombinase
YP_004552035.1	TIGRFAM: Uncharacterised protein family UPF0149; KEGG: smd:Smed_6363 YecA family protein
YP_004552036.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6364 transposase IS66
YP_004552037.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6365 IS66 Orf2 family protein
YP_004552038.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_5516 transposase IS3/IS911 family protein
YP_004552039.1	PFAM: Integrase, catalytic core, phage; KEGG: rle:pRL70045 putative integrase/recombinase
YP_004552040.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: sal:Sala_0440 phage integrase
YP_004552041.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: rhi:NGR_a01870 DNA integration/recombination/inversion protein
YP_004552042.1	PFAM: Transposase, IS801/IS1294; KEGG: rhi:NGR_a01880 putative transposase of undefined mobile element
YP_004552043.1	KEGG: rlg:Rleg_0729 hypothetical protein
YP_004552044.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004552045.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004552046.1	KEGG: avi:Avi_8233 hypothetical protein
YP_004552047.1	PFAM: Transposase IS3/IS911family; KEGG: ara:Arad_9823 insertion sequence transposase protein
YP_004552048.1	PFAM: Integrase, catalytic core; KEGG: rle:RL0792 putative transposase
YP_004552049.1	KEGG: aeh:Mlg_0415 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase
YP_004552050.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: hje:HacjB3_12310 Asp/Glu/hydantoin racemase
YP_004552051.1	PFAM: Transposase, IS66; KEGG: azl:AZL_a06210 transposase
YP_004552052.1	PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: sno:Snov_1412 ATP-NAD/AcoX kinase
YP_004552053.1	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: mdi:METDI4483 glutamate dehydrogenase (NAD(P)+) oxidoreductase protein; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
YP_004552054.1	PFAM: Aspartate/glutamate/uridylate kinase; KEGG: cai:Caci_6327 aspartate kinase
YP_004552055.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: hoh:Hoch_4359 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_004552056.1	KEGG: met:M446_6055 RNA-binding S4 domain-containing protein
YP_004552057.1	KEGG: ngr:NAEGRDRAFT_54258 hypothetical protein
YP_004552058.1	KEGG: smd:Smed_6226 hypothetical protein
YP_004552059.1	KEGG: smd:Smed_6270 transcriptional regulator FixK; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_004552060.1	KEGG: rce:RC1_3695 electron transfer flavoprotein, beta subunit FixA (essential for nitrogen fixation)
YP_004552061.1	PFAM: Aldehyde dehydrogenase domain; KEGG: rhi:NGR_b07020 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
YP_004552062.1	TIGRFAM: Dihydrodipicolinate synthase subfamily; KEGG: rlt:Rleg2_5061 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase
YP_004552063.1	PFAM: Protein of unknown function DUF1611; KEGG: mno:Mnod_4476 protein of unknown function DUF1611
YP_004552064.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: pde:Pden_1437 pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_004552065.1	KEGG: rva:Rvan_1248 hypothetical protein
YP_004552066.1	KEGG: smd:Smed_5977 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004552067.1	PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: smd:Smed_5978 ferredoxin
YP_004552068.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5979 Rieske (2Fe-2S) domain-containing protein
YP_004552069.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5980 LysR family transcriptional regulator
YP_004552070.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_6054 methyltransferase type 11
YP_004552071.1	KEGG: smd:Smed_6052 hypothetical protein
YP_004552072.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_5993 MucR family transcriptional regulator
YP_004552073.1	KEGG: smd:Smed_6061 hypothetical protein
YP_004552074.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_5998 NUDIX hydrolase
YP_004552075.1	KEGG: atu:Atu4214 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004552076.1	KEGG: smd:Smed_6170 hypothetical protein
YP_004552077.1	KEGG: smd:Smed_6073 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004552078.1	PFAM: Protein of unknown function DUF2280; KEGG: rlt:Rleg2_2433 hypothetical protein
YP_004552079.1	KEGG: smd:Smed_6077 hypothetical protein
YP_004552080.1	KEGG: smd:Smed_1899 hypothetical protein
YP_004552081.1	KEGG: smd:Smed_6079 hypothetical protein
YP_004552082.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: smd:Smed_6081 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004552084.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: rhi:NGR_c04090 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_004552085.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: smd:Smed_6084 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004552086.1	PFAM: Transposase, IS4-like; KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004552087.1	KEGG: rhi:NGR_a00350 uncharacterized transcription regulator (Cro/CI family); PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004552088.1	KEGG: smd:Smed_6140 carbonate dehydratase; PFAM: Carbonic anhydrase, alpha-class, catalytic domain
YP_004552089.1	PFAM: Major facilitator superfamily MFS-1; KEGG: hne:HNE_0994 major facilitator family transporter
YP_004552090.1	PFAM: Domain of unknown function DUF88; KEGG: hdn:Hden_2248 protein of unknown function DUF88
YP_004552091.1	KEGG: rsp:RSP_4199 hypothetical protein
YP_004552092.1	PFAM: UspA; KEGG: avi:Avi_5068 universal stress protein
YP_004552093.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: avi:Avi_5067 sulfate permease
YP_004552094.1	PFAM: Domain of unknown function DUF88; KEGG: rhi:NGR_c08220 hypothetical protein
YP_004552095.1	PFAM: Protein of unknown function DUF1109; KEGG: mlo:mll3492 hypothetical protein
YP_004552096.1	KEGG: mlo:mll3493 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004552097.1	PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: bra:BRADO7096 hypothetical protein
YP_004552098.1	KEGG: rlg:Rleg_5938 hypothetical protein; HAMAP: Uncharacterised protein family UPF0276; PFAM: Uncharacterised protein family UPF0276
YP_004552099.1	PFAM: Protein of unknown function DUF2063; KEGG: rpe:RPE_1949 hypothetical protein
YP_004552100.1	PFAM: Uncharacterised protein family YphA; KEGG: rpe:RPE_1950 DoxX family protein
YP_004552101.1	manually curated; KEGG: rhi:NGR_a02210 putative transposase number 1 of degenerate insertion sequence
YP_004552102.1	KEGG: rhi:NGR_a02220 putative transposase number 2 of degenerate insertion sequence
YP_004552103.1	KEGG: rhi:NGR_b16790 putative transposase number 4 for insertion sequence NGRIS-4i; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004552104.1	PFAM: Integrase, catalytic core; KEGG: bvi:Bcep1808_7043 integrase catalytic subunit
YP_004552105.1	PFAM: Transposase IS3/IS911family; KEGG: rsl:RPSI07_mp0238 transposase
YP_004552107.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: mlo:mll1845 hypothetical protein
YP_004552108.1	PFAM: Plasmid stabilisation system; KEGG: pau:PA14_63450 hypothetical protein
YP_004552109.1	manually curated; TIGRFAM: Putative addiction module antidote protein, CC2985; KEGG: rhi:NGR_b02240 hypothetical protein; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_004552110.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_6062 NUDIX hydrolase
YP_004552111.1	KEGG: smd:Smed_5775 CheB methylesterase
YP_004552112.1	KEGG: pol:Bpro_5170 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004552113.1	PFAM: Nitroreductase-like; KEGG: bge:BC1002_6415 nitroreductase
YP_004552114.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bge:BC1002_6414 carboxymuconolactone decarboxylase
YP_004552115.1	KEGG: pol:Bpro_5167 hypothetical protein
YP_004552116.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mno:Mnod_8441 alcohol dehydrogenase GroES domain protein
YP_004552117.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4895 cupin 2 domain-containing protein
YP_004552118.1	KEGG: ara:Arad_7852 transposase
YP_004552119.1	KEGG: smd:Smed_2148 hypothetical protein
YP_004552120.1	KEGG: rhi:NGR_b22120 hypothetical protein
YP_004552121.1	PFAM: Polysaccharide export protein; KEGG: rhi:NGR_b22130 hypothetical protein
YP_004552122.1	KEGG: mes:Meso_4604 integrase catalytic subunit
YP_004552123.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: oan:Oant_3517 GCN5-related N-acetyltransferase
YP_004552124.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sno:Snov_2036 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004552125.1	PFAM: Uncharacterised protein family Atu4866; KEGG: hne:HNE_0020 hypothetical protein
YP_004552126.1	PFAM: Isochorismatase-like; KEGG: pap:PSPA7_3014 hydrolase
YP_004552127.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5229 LysR family transcriptional regulator
YP_004552128.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5229 LysR family transcriptional regulator
YP_004552129.1	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: smd:Smed_5228 pirin domain-containing protein
YP_004552130.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_5227 NADP oxidoreductase coenzyme F420-dependent
YP_004552131.1	PFAM: Flavodoxin-like fold; KEGG: ilo:IL2192 NAD(P)H oxidoreductase
YP_004552132.1	KEGG: atu:Atu2189 hypothetical protein
YP_004552133.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein WrbA; KEGG: smd:Smed_5226 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_004552134.1	KEGG: smd:Smed_5225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004552135.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_5224 hypothetical protein
YP_004552136.1	KEGG: smd:Smed_5223 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004552137.1	PFAM: Uncharacterised protein family YphA; KEGG: smd:Smed_5222 DoxX family protein
YP_004552138.1	KEGG: aav:Aave_1551 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004552139.1	KEGG: smd:Smed_5220 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004552140.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_5219 antibiotic biosynthesis monooxygenase
YP_004552141.1	PFAM: Protein of unknown function DUF1330; KEGG: smd:Smed_5218 hypothetical protein
YP_004552142.1	KEGG: smd:Smed_5217 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004552143.1	KEGG: smd:Smed_5216 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004552144.1	KEGG: smd:Smed_5215 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004552145.1	KEGG: mmw:Mmwyl1_4109 ABC transporter-like protein
YP_004552146.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bge:BC1002_3270 carboxymuconolactone decarboxylase
YP_004552147.1	KEGG: axy:AXYL_03686 hypothetical protein
YP_004552148.1	KEGG: mmw:Mmwyl1_0901 hypothetical protein
YP_004552149.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5891 LysR family transcriptional regulator
YP_004552150.1	KEGG: atu:Atu5085 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004552151.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: atu:Atu5084 LysR family transcriptional regulator
YP_004552152.1	KEGG: mes:Meso_0784 short-chain dehydrogenase/reductase SDR
YP_004552153.1	KEGG: bbr:BB0341 GntR family transcriptional regulator
YP_004552154.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: atu:Atu6152 transposase
YP_004552155.1	manually curated; KEGG: rhi:NGR_a02600 conserved hypothetical 56.8 kDa protein
YP_004552156.1	KEGG: rhi:NGR_a02590 putative integrase/recombinase of undefined transposable element; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal
YP_004552157.1	PFAM: Domain of unknown function DUF418; Protein of unknown function DUF1624; KEGG: scb:SCAB_2811 putative integral membrane protein
YP_004552158.1	PFAM: Transposase, IS66; KEGG: rhi:NGR_a03340 putative transposase number 3 for insertion sequence NGRIS-15b
YP_004552159.1	KEGG: avi:Avi_7046 transposase
YP_004552160.1	KEGG: mlo:mlr9276 PhnM, phosphonate metabolism protein; TIGRFAM: Phosphonate metabolism PhnM; PFAM: Amidohydrolase 3
YP_004552161.1	TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: bph:Bphy_3772 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004552162.1	PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: dfe:Dfer_5338 type I phosphodiesterase/nucleotide pyrophosphatase
YP_004552163.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mlo:mll9149 oligopeptide ABC transpoter oligopeptide-binding protein
YP_004552164.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: ele:Elen_1221 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like
YP_004552165.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: ckp:ckrop_0092 ABC-type transport system, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004552166.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1587 oligopeptide ABC transporter permease
YP_004552167.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2241 binding-protein-dependent transport systems inner membrane component
YP_004552168.1	KEGG: mlo:mlr5890 hypothetical protein; PFAM: Aminotransferase, class I/classII
YP_004552169.1	TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: mlo:mlr5888 asparagine synthetase; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II
YP_004552170.1	PFAM: Formyl transferase, N-terminal; KEGG: dsa:Desal_0590 formyl transferase domain protein
YP_004552171.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mlo:mlr5886 hypothetical protein
YP_004552172.1	PFAM: Nucleotidyl transferase; KEGG: mlo:mlr5884 hemolysin erythrocyte lysis protein 2
YP_004552173.1	KEGG: mlo:mlr5883 aspartate transaminase; PFAM: Aminotransferase, class I/classII
YP_004552174.1	TIGRFAM: Phosphoenolpyruvate phosphomutase, core; KEGG: mlo:mlr9115 phosphoenolpyruvate phosphomutase; PFAM: Isocitrate lyase/phosphorylmutase
YP_004552175.1	KEGG: mea:Mex_p10044 hypothetical protein
YP_004552176.1	KEGG: atu:Atu4855 conjugation protein; TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; Helicase domain, viral-like
YP_004552177.1	KEGG: sjp:SJA_P2-00370 hypothetical protein
YP_004552178.1	PFAM: Domain of unknown function DUF88; KEGG: rlg:Rleg_6293 protein of unknown function DUF88
YP_004552179.1	KEGG: ara:Arad_15021 mobilization protein C
YP_004552180.1	KEGG: ttu:TERTU_0207 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004552181.1	PFAM: Helix-turn-helix type 3; KEGG: gpb:HDN1F_36140 predicted transcriptional regulator
YP_004552182.1	KEGG: mpo:Mpop_5434 stability/partitioning determinant, putative
YP_004552183.1	KEGG: acr:Acry_3579 ATPase involved in chromosome partitioning-like protein
YP_004552184.1	KEGG: ara:Arad_15015 replication protein A
YP_004552185.1	KEGG: ara:Arad_15013 YagA-like protein
YP_004552186.1	KEGG: ara:Arad_15012 hypothetical protein
YP_004552187.1	KEGG: ara:Arad_7727 spore coat protein U family protein; PFAM: Spore coat protein U; SMART: Spore coat protein U
YP_004552188.1	PFAM: Pili assembly chaperone, N-terminal, bacterial; KEGG: ara:Arad_7726 hypothetical protein
YP_004552189.1	PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: ara:Arad_7725 hypothetical protein
YP_004552190.1	KEGG: mlo:mll7723 hypothetical protein; PFAM: Spore coat protein U; SMART: Spore coat protein U
YP_004552191.1	KEGG: vcn:VOLCADRAFT_116749 hypothetical protein
YP_004552192.1	KEGG: rpf:Rpic12D_5123 hypothetical protein
YP_004552193.1	PFAM: Plasmid stabilisation system; KEGG: gpb:HDN1F_35200 putative protein of plasmid stabilisation system, ParE type
YP_004552194.1	PFAM: CopG-like DNA-binding; KEGG: vei:Veis_3354 CopG family transcriptional regulator
YP_004552195.1	KEGG: rlt:Rleg2_4631 hypothetical protein
YP_004552196.1	manually curated; KEGG: sfu:Sfum_3429 hypothetical protein
YP_004552197.1	KEGG: tbr:Tb10.26.1010 hypothetical protein
YP_004552198.1	KEGG: ara:Arad_3289 hypothetical protein
YP_004552199.1	KEGG: ara:Arad_15015 replication protein A
YP_004552200.1	KEGG: msl:Msil_2457 hypothetical protein
YP_004552201.1	KEGG: ara:Arad_15013 YagA-like protein
YP_004552202.1	KEGG: ara:Arad_15012 hypothetical protein
YP_004552203.1	PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor; KEGG: avi:Avi_5686 hypothetical protein
YP_004552206.1	KEGG: vvi:100242880 hypothetical protein LOC100242880
YP_004552207.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004552208.1	KEGG: ara:Arad_14019 transposase
YP_004552209.1	manually curated; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B0968 LacI family transcription regulator; SMART: HTH transcriptional regulator, LacI
YP_004556282.1	KEGG: smd:Smed_2989 isochorismatase hydrolase; manually curated; PFAM: Isochorismatase-like
YP_004556283.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: mlo:mll2522 hypothetical protein
YP_004556284.1	KEGG: smd:Smed_3633 L-fuculose-phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal
YP_004556285.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: smd:Smed_3634 carbohydrate kinase FGGY
YP_004556286.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3635 xylose isomerase domain-containing protein
YP_004556287.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3636 inner-membrane translocator
YP_004556288.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_b11550 putative permease component of ABC transporter
YP_004556289.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_b11540 ribose import ATP-binding protein RbsA 2; SMART: ATPase, AAA+ type, core
YP_004556290.1	KEGG: smd:Smed_3639 putative ABC transporter periplasmic sugar-binding protein
YP_004556291.1	KEGG: smd:Smed_3640 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556292.1	TIGRFAM: GNAT-acetyltransferase; KEGG: smd:Smed_3641 glutathione synthase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004556293.1	TIGRFAM: Asparagine synthase family amidotransferase; Asparagine synthase, glutamine-hydrolyzing; KEGG: smd:Smed_3642 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase
YP_004556294.1	KEGG: smd:Smed_3643 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556295.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3644 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556296.1	PFAM: Binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like; KEGG: smd:Smed_3645 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556297.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3646 binding-protein-dependent transport systems inner membrane component
YP_004556298.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3647 4-phytase
YP_004556299.1	KEGG: smd:Smed_4431 3-demethylubiquinone-9 3-methyltransferase
YP_004556300.1	KEGG: smd:Smed_4432 hypothetical protein
YP_004556301.1	KEGG: smd:Smed_3665 peptidase M42 family protein; TIGRFAM: Peptidase M42, hydrolase; PFAM: Peptidase M42
YP_004556302.1	KEGG: smd:Smed_3666 hypothetical protein
YP_004556303.1	KEGG: smd:Smed_3667 hypothetical protein
YP_004556304.1	PFAM: Protein of unknown function DUF995; KEGG: smd:Smed_3668 hypothetical protein
YP_004556305.1	PFAM: Endoglucanase H/Glycosyl hydrolase family 26; KEGG: smd:Smed_3669 putative cellulase H precursor protein
YP_004556306.1	PFAM: Protein of unknown function DUF995; KEGG: smd:Smed_3670 hypothetical protein
YP_004556307.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_3671 putative cellulose synthase protein
YP_004556308.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_3672 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004556309.1	KEGG: smd:Smed_3673 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004556310.1	KEGG: smd:Smed_3674 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004556311.1	KEGG: smd:Smed_3675 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556312.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3676 TetR family transcriptional regulator
YP_004556313.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_3677 hypothetical protein
YP_004556314.1	KEGG: rlt:Rleg2_3486 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_004556315.1	KEGG: smd:Smed_3678 hypothetical protein
YP_004556316.1	SMART: ATPase-like, ATP-binding domain; KEGG: smd:Smed_3679 hypothetical protein
YP_004556317.1	KEGG: smd:Smed_3680 stage II sporulation E family protein; PFAM: Sporulation stage II, protein E C-terminal; Cache; HAMP linker domain; SMART: Protein phosphatase 2C-like; HAMP linker domain
YP_004556318.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3681 methyltransferase type 11
YP_004556319.1	KEGG: smd:Smed_3682 hypothetical protein
YP_004556320.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: smd:Smed_3683 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted
YP_004556321.1	TIGRFAM: Mannonate dehydratase; KEGG: smd:Smed_3684 mannonate dehydratase; PFAM: Mannonate dehydratase
YP_004556322.1	KEGG: smd:Smed_3685 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004556323.1	KEGG: smd:Smed_3686 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556324.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3687 tripartite ATP-independent periplasmic transporter DctQ
YP_004556325.1	KEGG: smd:Smed_3688 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004556326.1	KEGG: smd:Smed_3689 GntR domain-containing protein; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556327.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3690 major facilitator transporter
YP_004556328.1	KEGG: smd:Smed_3692 ectoine utilization protein EutE; TIGRFAM: Ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase
YP_004556329.1	KEGG: rhi:NGR_b23250 probable dipeptidase; TIGRFAM: Ectoine utilization protein EutD; PFAM: Creatinase; Peptidase M24, structural domain
YP_004556330.1	TIGRFAM: Ectoine utilization protein EutC; KEGG: smd:Smed_3694 ectoine utilization protein EutC; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_004556331.1	KEGG: smd:Smed_3695 threonine dehydratase; TIGRFAM: Ectoine utilization protein EutB; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004556332.1	KEGG: smd:Smed_3696 ectoine utilization protein EutA; TIGRFAM: Ectoine utilization protein EutA; PFAM: Asp/Glu/hydantoin racemase
YP_004556333.1	KEGG: smd:Smed_3697 ectoine/hydroxyectoine ABC transporter permease protein EhuD; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004556334.1	KEGG: smd:Smed_3698 ectoine/hydroxyectoine ABC transporter permease protein EhuC; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004556335.1	TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_3699 ectoine/hydroxyectoine ABC transporter solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_004556336.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; KEGG: smd:Smed_3700 ectoine/hydroxyectoine ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004556337.1	KEGG: smd:Smed_3701 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004556338.1	KEGG: rhi:NGR_b23340 probable transcriptional regulator protein, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004556339.1	KEGG: smd:Smed_3703 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004556340.1	KEGG: rhi:NGR_b23380 hypothetical protein; PFAM: Aminotransferase class-III
YP_004556341.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_3706 glutathione S-transferase domain-containing protein
YP_004556342.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3707 glycerol-3-phosphate transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core
YP_004556343.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3708 binding-protein-dependent transport systems inner membrane component
YP_004556344.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3709 binding-protein-dependent transport systems inner membrane component
YP_004556345.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3710 extracellular solute-binding protein
YP_004556346.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3711 NAD-dependent epimerase/dehydratase
YP_004556347.1	PFAM: Protein of unknown function DUF2269, transmembrane; KEGG: smd:Smed_3712 hypothetical protein
YP_004556348.1	KEGG: rlg:Rleg_5863 hypothetical protein
YP_004556349.1	KEGG: rlg:Rleg_5864 PIN domain protein family protein; TIGRFAM: Conserved hyprothetical protein CHP00028; PFAM: PilT protein, N-terminal
YP_004556350.1	KEGG: smd:Smed_3713 substrate-binding region of ABC-type glycine betaine transport system; TIGRFAM: ABC transporter, choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain
YP_004556351.1	KEGG: smd:Smed_3714 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556352.1	PFAM: Acetone carboxylase, gamma subunit-related; KEGG: smd:Smed_3715 acetone carboxylase gamma subunit
YP_004556353.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: smd:Smed_3716 hydantoinase B/oxoprolinase
YP_004556354.1	KEGG: smd:Smed_3717 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004556355.1	KEGG: smd:Smed_3718 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004556356.1	KEGG: mes:Meso_1907 twin-arginine translocation pathway signal; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004556357.1	KEGG: mes:Meso_1906 (2Fe-2S)-binding; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004556358.1	KEGG: mes:Meso_1905 cytochrome c, class I; PFAM: Cytochrome c, class I
YP_004556359.1	KEGG: smd:Smed_3719 hypothetical protein
YP_004556360.1	KEGG: smd:Smed_3721 hypothetical protein
YP_004556361.1	KEGG: smd:Smed_3722 hypothetical protein
YP_004556362.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_3723 metallophosphoesterase
YP_004556363.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: rpb:RPB_4513 (2Fe-2S)-binding protein
YP_004556364.1	KEGG: rpb:RPB_4512 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004556365.1	KEGG: rpc:RPC_4640 xanthine dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004556366.1	PFAM: Protein of unknown function, DUF1537; KEGG: rhi:NGR_b21990 hypothetical protein
YP_004556367.1	KEGG: smd:Smed_3724 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal
YP_004556368.1	KEGG: smd:Smed_3725 transcriptional regulator NanR; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556369.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_3726 cellulose synthase (UDP-forming)
YP_004556370.1	KEGG: smd:Smed_3727 hypothetical protein
YP_004556371.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: smd:Smed_3728 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; GAF
YP_004556372.1	KEGG: smd:Smed_3729 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004556373.1	KEGG: smd:Smed_3730 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004556374.1	KEGG: smd:Smed_3731 hypothetical protein
YP_004556375.1	KEGG: smd:Smed_3732 hypothetical protein
YP_004556376.1	PFAM: Peptidase M19, renal dipeptidase; KEGG: smd:Smed_3733 membrane dipeptidase
YP_004556377.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3734 putative ABC transporter periplasmic solute-binding protein
YP_004556378.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3735 binding-protein-dependent transport systems inner membrane component
YP_004556379.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3736 binding-protein-dependent transport systems inner membrane component
YP_004556380.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3737 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556381.1	KEGG: smd:Smed_3738 aminotransferase; PFAM: Aminotransferase class-III
YP_004556382.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_3739 aldehyde dehydrogenase
YP_004556383.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3740 endoribonuclease L-PSP
YP_004556384.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_3741 endoribonuclease L-PSP
YP_004556385.1	KEGG: smd:Smed_3742 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556386.1	KEGG: smd:Smed_3743 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004556387.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3744 tripartite ATP-independent periplasmic transporter DctQ
YP_004556388.1	KEGG: smd:Smed_3745 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556389.1	KEGG: smd:Smed_3746 ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase
YP_004556390.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3747 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556391.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: smd:Smed_3748 hypothetical protein
YP_004556392.1	KEGG: smd:Smed_3749 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004556393.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3750 TetR family transcriptional regulator
YP_004556394.1	KEGG: smd:Smed_3751 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556395.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3752 extracellular solute-binding protein
YP_004556396.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3753 binding-protein-dependent transport systems inner membrane component
YP_004556397.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3754 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556398.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_3755 inositol-phosphate phosphatase
YP_004556399.1	PFAM: Ion transport 2; KEGG: smd:Smed_3759 ion transport 2 domain-containing protein
YP_004556400.1	KEGG: smd:Smed_3760 hypothetical protein
YP_004556401.1	KEGG: smd:Smed_3761 hypothetical protein
YP_004556402.1	KEGG: smd:Smed_3762 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004556403.1	KEGG: smd:Smed_3763 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004556404.1	KEGG: smd:Smed_3764 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004556405.1	KEGG: smd:Smed_3765 hypothetical protein
YP_004556406.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3766 oxidoreductase domain-containing protein
YP_004556407.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3767 monosaccharide-transporting ATPase
YP_004556408.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3768 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556409.1	PFAM: Uncharacterised conserved protein UCP033535, periplasmic lipoprotein; KEGG: smd:Smed_3769 hypothetical protein
YP_004556410.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3770 periplasmic binding protein/LacI transcriptional regulator
YP_004556411.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_3771 NADP oxidoreductase coenzyme F420-dependent
YP_004556412.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3772 TetR family transcriptional regulator
YP_004556413.1	KEGG: smd:Smed_3773 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004556414.1	PFAM: Acriflavin resistance protein; KEGG: smd:Smed_3774 acriflavin resistance protein
YP_004556415.1	KEGG: smd:Smed_3775 AraC-like transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004556416.1	KEGG: smd:Smed_3776 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004556417.1	KEGG: smd:Smed_3777 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
YP_004556418.1	KEGG: smd:Smed_3778 hypothetical protein
YP_004556419.1	KEGG: smd:Smed_3779 hypothetical protein
YP_004556420.1	KEGG: smd:Smed_3780 hypothetical protein
YP_004556421.1	KEGG: smd:Smed_3781 hypothetical protein
YP_004556422.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3782 major facilitator transporter
YP_004556423.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3783 TetR family transcriptional regulator
YP_004556424.1	KEGG: smd:Smed_3784 hypothetical protein
YP_004556425.1	PFAM: Protein of unknown function DUF900, hydrolase-like; KEGG: smd:Smed_3785 protein of unknown function DUF900 hydrolase family protein
YP_004556426.1	KEGG: smd:Smed_3786 outer membrane autotransporter
YP_004556427.1	PFAM: Sulphatase-modifying factor; KEGG: smd:Smed_3787 hypothetical protein
YP_004556428.1	KEGG: pla:Plav_3162 putative transmembrane anti-sigma factor
YP_004556429.1	KEGG: smd:Smed_3806 hypothetical protein
YP_004556430.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3807 oxidoreductase domain-containing protein
YP_004556431.1	KEGG: smd:Smed_3808 hypothetical protein
YP_004556432.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3809 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556433.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3810 binding-protein-dependent transport systems inner membrane component
YP_004556434.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3811 binding-protein-dependent transport systems inner membrane component
YP_004556435.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3812 extracellular solute-binding protein
YP_004556436.1	KEGG: smd:Smed_3813 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004556437.1	KEGG: smd:Smed_3814 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556438.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3815 tripartite ATP-independent periplasmic transporter DctQ
YP_004556439.1	KEGG: smd:Smed_3816 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556440.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_3817 TRAP dicarboxylate transporter-DctP subunit
YP_004556441.1	KEGG: smd:Smed_3818 hypothetical protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like
YP_004556442.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3819 monosaccharide-transporting ATPase
YP_004556443.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3820 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556444.1	KEGG: smd:Smed_3821 periplasmic binding protein/LacI transcriptional regulator
YP_004556445.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3822 monosaccharide-transporting ATPase
YP_004556446.1	KEGG: smd:Smed_3823 glycerone kinase; PFAM: Dak kinase
YP_004556447.1	KEGG: smd:Smed_3824 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase
YP_004556448.1	KEGG: smd:Smed_3825 glycerone kinase; PFAM: Dak kinase; RNA polymerase sigma factor 70, region 4 type 2; Sugar-binding domain, putative
YP_004556449.1	KEGG: smd:Smed_3826 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase
YP_004556450.1	KEGG: smd:Smed_3828 hypothetical protein
YP_004556451.1	KEGG: rhi:NGR_b18610 hypothetical protein
YP_004556452.1	KEGG: mes:Meso_2552 glucose sorbosone dehydrogenase
YP_004556453.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_3831 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004556454.1	KEGG: smd:Smed_3832 N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase
YP_004556455.1	PFAM: Dihydrodipicolinate synthetase; KEGG: smd:Smed_3833 dihydrodipicolinate synthetase
YP_004556456.1	KEGG: smd:Smed_3834 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556457.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_3835 tripartite ATP-independent periplasmic transporter DctQ
YP_004556458.1	KEGG: smd:Smed_3836 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004556459.1	KEGG: smd:Smed_3837 transcriptional regulator NanR; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556460.1	KEGG: smd:Smed_3838 hypothetical protein
YP_004556461.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: smd:Smed_3839 TRAP transporter solute receptor TAXI family protein
YP_004556462.1	KEGG: smd:Smed_3840 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556463.1	KEGG: smd:Smed_3841 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556464.1	KEGG: smd:Smed_3843 amidohydrolase; PFAM: Amidohydrolase 1
YP_004556465.1	PFAM: Protein of unknown function DUF81; KEGG: smd:Smed_3844 hypothetical protein
YP_004556466.1	KEGG: smd:Smed_3845 opine dehydrogenase; PFAM: Opine dehydrogenase; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
YP_004556467.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3846 LysR family transcriptional regulator
YP_004556468.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3847 extracellular solute-binding protein
YP_004556469.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3848 binding-protein-dependent transport systems inner membrane component
YP_004556470.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3849 binding-protein-dependent transport systems inner membrane component
YP_004556471.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: smd:Smed_3850 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2
YP_004556472.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_3851 hypothetical protein
YP_004556473.1	KEGG: smd:Smed_3852 hypothetical protein
YP_004556474.1	KEGG: smd:Smed_3853 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase
YP_004556475.1	KEGG: smd:Smed_3854 hypothetical protein; PFAM: Aminotransferase class-III
YP_004556476.1	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: smd:Smed_3855 RpiR family transcriptional regulator
YP_004556477.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: smd:Smed_3856 hypothetical protein
YP_004556478.1	KEGG: smd:Smed_3857 hypothetical protein
YP_004556479.1	KEGG: fal:FRAAL0702 hypothetical protein
YP_004556480.1	KEGG: smd:Smed_3858 hypothetical protein
YP_004556481.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_3859 major facilitator transporter
YP_004556482.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: smd:Smed_3860 OsmC family protein
YP_004556483.1	KEGG: smd:Smed_3861 proline racemase; PFAM: Proline racemase
YP_004556484.1	PFAM: Domain of unknown function DUF521; Domain of unknown function DUF126; KEGG: smd:Smed_3862 hypothetical protein
YP_004556485.1	KEGG: smd:Smed_3863 hydroxyproline-2-epimerase; PFAM: Proline racemase
YP_004556486.1	KEGG: smd:Smed_3864 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_004556487.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3865 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556488.1	KEGG: smd:Smed_3866 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004556489.1	KEGG: smd:Smed_3867 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004556490.1	KEGG: smd:Smed_3868 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004556491.1	KEGG: smd:Smed_3869 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004556492.1	KEGG: smd:Smed_3870 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_004556493.1	PFAM: Protein of unknown function DUF1232; KEGG: smd:Smed_3871 hypothetical protein
YP_004556494.1	KEGG: smd:Smed_3873 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase
YP_004556495.1	KEGG: smd:Smed_3874 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556496.1	KEGG: smd:Smed_3875 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004556497.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rhi:NGR_b03360 hypothetical protein
YP_004556498.1	PFAM: Protein of unknown function DUF1003; KEGG: smd:Smed_3877 hypothetical protein
YP_004556499.1	KEGG: smd:Smed_3878 hypothetical protein
YP_004556500.1	KEGG: smd:Smed_3879 hypothetical protein
YP_004556501.1	PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; KEGG: smd:Smed_3880 hypothetical protein
YP_004556502.1	KEGG: smd:Smed_3881 hypothetical protein
YP_004556503.1	KEGG: smd:Smed_3882 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004556504.1	PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: smd:Smed_3883 myo-inositol-1-phosphate synthase
YP_004556505.1	KEGG: smd:Smed_3884 hypothetical protein
YP_004556506.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_3885 oxidoreductase domain-containing protein
YP_004556507.1	KEGG: smd:Smed_3886 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004556508.1	KEGG: smd:Smed_3887 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004556509.1	KEGG: smd:Smed_3888 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004556510.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_3889 glycosyl transferase group 1
YP_004556511.1	KEGG: smd:Smed_3890 hypothetical protein
YP_004556512.1	KEGG: smd:Smed_3891 hypothetical protein
YP_004556513.1	KEGG: smd:Smed_3892 hypothetical protein
YP_004556514.1	KEGG: smd:Smed_3893 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004556515.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_3894 methyltransferase type 11
YP_004556516.1	KEGG: smd:Smed_3897 hypothetical protein
YP_004556517.1	KEGG: smd:Smed_3898 hypothetical protein
YP_004556518.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_2311 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556519.1	KEGG: smd:Smed_2312 hypothetical protein
YP_004556520.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2313 binding-protein-dependent transport systems inner membrane component
YP_004556521.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2314 binding-protein-dependent transport systems inner membrane component
YP_004556522.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_2315 extracellular solute-binding protein
YP_004556523.1	manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: smd:Smed_2316 alanine racemase; SMART: HTH transcriptional regulator, LacI
YP_004556524.1	KEGG: smd:Smed_3899 putative nutrient deprivation-induced protein
YP_004556525.1	KEGG: smd:Smed_3900 putative nutrient deprivation-induced protein
YP_004556526.1	KEGG: smd:Smed_3901 putative nutrient deprivation-induced protein
YP_004556527.1	KEGG: smd:Smed_3902 hypothetical protein
YP_004556528.1	KEGG: smd:Smed_3903 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_004556529.1	KEGG: smd:Smed_3904 hypothetical protein
YP_004556530.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_3906 cupin 2 domain-containing protein
YP_004556531.1	KEGG: rhi:NGR_b05560 epoxide hydrolase; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1
YP_004556532.1	KEGG: smd:Smed_3907 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004556533.1	KEGG: smd:Smed_3908 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004556534.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_3909 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004556535.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: smd:Smed_3910 alpha/beta hydrolase fold
YP_004556536.1	KEGG: rhi:NGR_b02420 putative AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004556537.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rhi:NGR_b02400 probable short-chain dehydrogenase
YP_004556539.1	PFAM: Cytochrome c assembly protein, transmembrane domain; Redoxin; KEGG: rhi:NGR_b02390 putative cytochrome biogenesis protein
YP_004556540.1	PFAM: ThiJ/PfpI; KEGG: smd:Smed_3911 ThiJ/PfpI domain-containing protein
YP_004556541.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3912 LysR family transcriptional regulator
YP_004556542.1	KEGG: smd:Smed_3913 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556543.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: smd:Smed_3914 4-oxalocrotonate tautomerase
YP_004556544.1	TIGRFAM: Coenzyme PQQ biosynthesis protein E, bacteria; PFAM: Radical SAM; KEGG: smd:Smed_3915 pyrroloquinoline quinone biosynthesis protein PqqE; SMART: Elongator protein 3/MiaB/NifB
YP_004556545.1	KEGG: smd:Smed_3916 coenzyme PQQ synthesis D; TIGRFAM: Coenzyme PQQ synthesis D, bacteria; HAMAP: Coenzyme PQQ synthesis protein D
YP_004556546.1	TIGRFAM: Coenzyme PQQ biosynthesis protein C; KEGG: smd:Smed_3917 pyrroloquinoline quinone biosynthesis protein PqqC; PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C
YP_004556547.1	KEGG: smd:Smed_3918 pyrroloquinoline quinone biosynthesis protein PqqB; TIGRFAM: Coenzyme PQQ biosynthesis protein B; HAMAP: Coenzyme PQQ synthesis protein B
YP_004556548.1	manually curated; TIGRFAM: Coenzyme PQQ biosynthesis protein A; KEGG: rhi:NGR_b03260 coenzyme PQQ synthesis protein A; PFAM: Coenzyme PQQ biosynthesis protein A
YP_004556549.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_3919 LysR family transcriptional regulator
YP_004556550.1	KEGG: smd:Smed_3920 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase
YP_004556551.1	KEGG: smd:Smed_3921 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase
YP_004556552.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: smd:Smed_3922 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004556553.1	TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: smd:Smed_3923 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II
YP_004556554.1	HAMAP: Ribulose bisphosphate carboxylase, large subunit; KEGG: smd:Smed_3924 ribulose bisophosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_004556555.1	PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: smd:Smed_3925 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain
YP_004556556.1	TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: smd:Smed_3926 CbxX/CfqX monofunctional; SMART: ATPase, AAA+ type, core
YP_004556557.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: smd:Smed_3927 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_004556558.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: smd:Smed_3928 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004556559.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; TIGRFAM: S-(hydroxymethyl)glutathione synthase; HAMAP: Glutathione-dependent formaldehyde-activating enzyme; KEGG: smd:Smed_3930 glutathione-dependent formaldehyde-activating enzyme
YP_004556560.1	KEGG: smd:Smed_3931 ABC-2 type transporter; TIGRFAM: Alcohol ABC transporter, permease protein; PFAM: ABC-2 type transporter
YP_004556561.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; KEGG: smd:Smed_3932 ABC transporter related; PFAM: ABC transporter-like
YP_004556562.1	KEGG: smd:Smed_3933 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004556563.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3934 binding-protein-dependent transport systems inner membrane component
YP_004556564.1	KEGG: smd:Smed_3935 putative ABC transporter periplasmic solute-binding protein
YP_004556565.1	KEGG: smd:Smed_3936 hypothetical protein
YP_004556566.1	TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; YVTN beta-propeller repeat; PFAM: Lactonase, 7-bladed beta propeller; KEGG: smd:Smed_3937 YVTN beta-propeller repeat-containing protein; SMART: WD40 repeat
YP_004556567.1	TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system; KEGG: smd:Smed_3938 hypothetical protein
YP_004556568.1	PFAM: Protein of unknown function DUF2380; KEGG: smd:Smed_3939 hypothetical protein
YP_004556569.1	KEGG: cre:CHLREDRAFT_189410 hypothetical protein
YP_004556570.1	TIGRFAM: PQQ-dependent catabolism-associated CXXCW motif; KEGG: smd:Smed_3940 hypothetical protein
YP_004556571.1	TIGRFAM: Quinoprotein dehydrogenase-associated; PFAM: Extracellular solute-binding protein, family 3; KEGG: smd:Smed_3941 extracellular solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_004556572.1	TIGRFAM: C-type cytochrome, methanol metabolism-related; KEGG: smd:Smed_3942 putative cytochrome c protein
YP_004556573.1	TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: smd:Smed_3943 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal
YP_004556574.1	PFAM: Cytochrome c, class I; KEGG: smd:Smed_3944 cytochrome c class I
YP_004556575.1	TIGRFAM: S-formylglutathione hydrolase; KEGG: smd:Smed_3945 S-formylglutathione hydrolase; PFAM: Putative esterase
YP_004556576.1	KEGG: smd:Smed_3946 S-(hydroxymethyl)glutathione dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004556577.1	KEGG: smd:Smed_3947 hypothetical protein
YP_004556578.1	KEGG: smd:Smed_3948 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004556579.1	PFAM: Sulphur oxidation protein SoxZ; KEGG: smd:Smed_3949 sulphur oxidation protein SoxZ
YP_004556580.1	KEGG: smd:Smed_3950 hypothetical protein
YP_004556581.1	KEGG: smd:Smed_3951 hypothetical protein
YP_004556582.1	KEGG: smd:Smed_3952 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain
YP_004556583.1	KEGG: smd:Smed_3953 hypothetical protein; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal
YP_004556584.1	KEGG: smd:Smed_3954 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004556585.1	KEGG: smd:Smed_3955 hypothetical protein
YP_004556586.1	PFAM: Helix-turn-helix protein RpiR; KEGG: smd:Smed_3957 RpiR family transcriptional regulator
YP_004556587.1	PFAM: Dual specificity phosphatase, catalytic domain; KEGG: smd:Smed_3958 dual specificity protein phosphatase
YP_004556588.1	PFAM: Inositol monophosphatase; KEGG: smd:Smed_3959 inositol-phosphate phosphatase
YP_004556589.1	KEGG: smd:Smed_3960 ABC transporter periplasmic solute-binding protein
YP_004556590.1	KEGG: smd:Smed_3961 ABC transporter periplasmic solute-binding protein
YP_004556591.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_3962 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556592.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3963 binding-protein-dependent transport systems inner membrane component
YP_004556593.1	KEGG: smd:Smed_3964 periplasmic binding protein/LacI transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004556594.1	KEGG: smd:Smed_3965 sodium-dependent inorganic phosphate (Pi) transporter; TIGRFAM: Na/Pi-cotransporter; PFAM: Na/Pi-cotransporter; PhoU
YP_004556595.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_3966 metallophosphoesterase
YP_004556596.1	PFAM: Dual specificity phosphatase, catalytic domain; KEGG: smd:Smed_3967 dual specificity protein phosphatase
YP_004556597.1	KEGG: smd:Smed_3968 inositol-phosphate phosphatase; manually curated; PFAM: Inositol monophosphatase
YP_004556598.1	PFAM: Protein of unknown function, DUF1537; KEGG: smd:Smed_3980 hypothetical protein
YP_004556599.1	KEGG: smd:Smed_3981 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556600.1	KEGG: smd:Smed_3982 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004556601.1	PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: smd:Smed_3983 4-hydroxythreonine-4-phosphate dehydrogenase
YP_004556602.1	KEGG: smd:Smed_3984 hypothetical protein
YP_004556603.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_3985 extracellular solute-binding protein
YP_004556604.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3986 binding-protein-dependent transport systems inner membrane component
YP_004556605.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3987 binding-protein-dependent transport systems inner membrane component
YP_004556606.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_3988 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556607.1	PFAM: Dihydrodipicolinate synthetase; KEGG: smd:Smed_3989 dihydrodipicolinate synthetase
YP_004556608.1	PFAM: Protein of unknown function DUF2243, membrane; KEGG: smd:Smed_3995 hypothetical protein
YP_004556609.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_3997 amidohydrolase 2
YP_004556610.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_3998 amidohydrolase 2
YP_004556611.1	KEGG: smd:Smed_3999 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_004556612.1	KEGG: smd:Smed_4000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_004556613.1	KEGG: smd:Smed_4001 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease
YP_004556614.1	KEGG: smd:Smed_4002 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004556615.1	KEGG: smd:Smed_4003 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004556616.1	KEGG: smd:Smed_4004 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004556617.1	KEGG: smd:Smed_4005 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004556618.1	KEGG: smd:Smed_4006 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556619.1	PFAM: Basic membrane lipoprotein; KEGG: smd:Smed_4008 basic membrane lipoprotein
YP_004556620.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4009 inner-membrane translocator
YP_004556621.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4010 inner-membrane translocator
YP_004556622.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4011 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556623.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4012 LysR family transcriptional regulator
YP_004556624.1	TIGRFAM: Putative addiction module antidote protein, CC2985; KEGG: tin:Tint_3251 putative transcriptional regulator, CopG/Arc/MetJ family
YP_004556625.1	PFAM: Plasmid stabilisation system; KEGG: vei:Veis_2290 plasmid stabilization system protein
YP_004556626.1	PFAM: Endoribonuclease L-PSP; KEGG: sna:Snas_2385 endoribonuclease L-PSP
YP_004556627.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4020 glycosyl transferase group 1
YP_004556628.1	PFAM: Amylo-alpha-1,6-glucosidase; KEGG: smd:Smed_4021 amylo-alpha-16-glucosidase
YP_004556629.1	KEGG: smd:Smed_4022 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004556630.1	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: smd:Smed_4023 hypothetical protein
YP_004556631.1	KEGG: smd:Smed_4024 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004556632.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4025 hypothetical protein
YP_004556633.1	KEGG: smd:Smed_4026 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_004556634.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4027 binding-protein-dependent transport systems inner membrane component
YP_004556635.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4028 binding-protein-dependent transport systems inner membrane component
YP_004556636.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4029 extracellular solute-binding protein
YP_004556637.1	KEGG: smd:Smed_4030 hypothetical protein
YP_004556638.1	KEGG: smd:Smed_4031 GntR domain-containing protein; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556639.1	KEGG: smd:Smed_4032 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556640.1	PFAM: Flavin-containing monooxygenase-like; KEGG: smd:Smed_4033 putative monooxygenase protein
YP_004556641.1	KEGG: smd:Smed_4035 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core
YP_004556642.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4036 hydroxyglutarate oxidase
YP_004556643.1	KEGG: smd:Smed_4037 putative dehydrogenase protein; TIGRFAM: Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup
YP_004556644.1	PFAM: Glycosyl hydrolase, family 13, catalytic domain; KEGG: smd:Smed_4038 alpha amylase catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004556645.1	PFAM: Protein of unknown function DUF1362; KEGG: smd:Smed_4039 hypothetical protein
YP_004556646.1	TIGRFAM: FAD-linked oxidoreductase; KEGG: smd:Smed_4040 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase
YP_004556647.1	PFAM: Protein of unknown function DUF1362; KEGG: smd:Smed_4041 hypothetical protein
YP_004556648.1	KEGG: smd:Smed_4042 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_004556649.1	KEGG: smd:Smed_4043 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase
YP_004556650.1	PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: smd:Smed_4044 hypothetical protein
YP_004556651.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: smd:Smed_4045 endonuclease/exonuclease/phosphatase
YP_004556652.1	PFAM: Protein of unknown function DUF892; KEGG: smd:Smed_4046 hypothetical protein
YP_004556653.1	KEGG: rhi:NGR_c30630 hypothetical protein
YP_004556654.1	KEGG: smd:Smed_4047 hypothetical protein
YP_004556655.1	TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: smd:Smed_4048 protein-L-isoaspartate O-methyltransferase; PFAM: Erythromycin esterase; Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004556656.1	KEGG: rhi:NGR_c30460 hypothetical protein
YP_004556657.1	KEGG: rhi:NGR_c30470 hypothetical protein
YP_004556658.1	KEGG: rhi:NGR_c30480 hypothetical protein
YP_004556659.1	KEGG: smd:Smed_4051 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328
YP_004556660.1	KEGG: smd:Smed_4054 hypothetical protein
YP_004556661.1	KEGG: smd:Smed_4055 hypothetical protein
YP_004556662.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_4056 metallophosphoesterase
YP_004556663.1	KEGG: smd:Smed_4057 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004556664.1	KEGG: smd:Smed_4058 hemolysin-type calcium-binding region
YP_004556665.1	KEGG: smd:Smed_4832 hypothetical protein
YP_004556666.1	KEGG: smd:Smed_4059 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004556667.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: smd:Smed_4060 integral membrane sensor signal transduction histidine kinase
YP_004556668.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_4061 short chain dehydrogenase
YP_004556669.1	KEGG: smd:Smed_4062 hypothetical protein
YP_004556670.1	KEGG: smd:Smed_4063 hypothetical protein
YP_004556671.1	KEGG: smd:Smed_4064 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556672.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4065 periplasmic binding protein/LacI transcriptional regulator
YP_004556673.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4066 major facilitator transporter
YP_004556674.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: smd:Smed_4067 sulphate transporter
YP_004556675.1	KEGG: smd:Smed_5157 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter
YP_004556676.1	PFAM: Dodecin flavoprotein; KEGG: smd:Smed_4069 hypothetical protein
YP_004556677.1	PFAM: Domain of unknown function DUF296; KEGG: sno:Snov_0411 protein of unknown function DUF296
YP_004556678.1	KEGG: rhi:NGR_b02820 hypothetical protein
YP_004556679.1	KEGG: smd:Smed_4074 hypothetical protein
YP_004556680.1	PFAM: Transposase IS3/IS911family; KEGG: cak:Caul_2180 integrase catalytic region
YP_004556681.1	PFAM: Plasmid stabilisation system; KEGG: ara:Arad_1901 hypothetical protein
YP_004556682.1	KEGG: ara:Arad_1900 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor
YP_004556683.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4078 methyltransferase type 11
YP_004556684.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4079 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556685.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_4080 transport system permease protein
YP_004556686.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_4081 periplasmic binding protein
YP_004556687.1	PFAM: Protein of unknown function DUF1850; KEGG: mes:Meso_4069 hypothetical protein
YP_004556688.1	KEGG: mes:Meso_4068 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556689.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mes:Meso_4067 TRAP transporter solute receptor TAXI family protein
YP_004556691.1	KEGG: smd:Smed_4083 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004556692.1	KEGG: atu:Atu3463 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1
YP_004556693.1	KEGG: atu:Atu8032 hypothetical protein
YP_004556694.1	KEGG: smd:Smed_4086 elongation factor G; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_004556695.1	SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; manually curated; KEGG: rhi:NGR_b23610 probable transcriptional regulator protein, GntR family; TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004556696.1	KEGG: smd:Smed_4088 hypothetical protein
YP_004556697.1	KEGG: smd:Smed_4089 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004556698.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: RepB plasmid partition; ParB-like nuclease; KEGG: smd:Smed_4090 ParB-like partition protein; SMART: ParB-like nuclease
YP_004556699.1	KEGG: smd:Smed_4091 replication initiation protein RepC; manually curated; PFAM: Replication protein C
YP_004556700.1	KEGG: smd:Smed_4092 hypothetical protein
YP_004556701.1	PFAM: Protein of unknown function DUF1612; Uncharacterised protein family HTH DNA binding domain; KEGG: smd:Smed_4093 hypothetical protein
YP_004556702.1	KEGG: smd:Smed_4094 hypothetical protein
YP_004556703.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4095 hypothetical protein
YP_004556704.1	KEGG: smd:Smed_4096 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004556705.1	KEGG: rlg:Rleg_5437 putative thioredoxin (H-type,TRX-H)
YP_004556706.1	KEGG: rhi:NGR_b00200 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
YP_004556707.1	KEGG: rhi:NGR_b00210 extracytoplasmic solute receptor of TRAP-transport system; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004556708.1	KEGG: rhi:NGR_b00220 large transmembrane subunit, TRAP-transport system; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004556709.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rhi:NGR_b00230 small transmembrane subunit, TRAP-transport system
YP_004556710.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rhi:NGR_b00240 transcriptional regulator, TetR/ArcR family
YP_004556711.1	KEGG: smd:Smed_4097 hypothetical protein
YP_004556712.1	KEGG: smd:Smed_4098 RNA polymerase sigma factor SigJ; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004556713.1	KEGG: smd:Smed_4099 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004556714.1	KEGG: bid:Bind_3527 prevent-host-death family protein
YP_004556715.1	KEGG: smd:Smed_3872 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; manually curated; PFAM: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_004556716.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4102 hypothetical protein
YP_004556717.1	KEGG: smd:Smed_4103 hypothetical protein
YP_004556718.1	KEGG: smd:Smed_4104 hypothetical protein
YP_004556719.1	TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: smd:Smed_4105 pseudouridine synthase; SMART: RNA-binding S4
YP_004556720.1	KEGG: smd:Smed_4106 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; Hydantoinase/oxoprolinase
YP_004556721.1	PFAM: Dienelactone hydrolase; KEGG: smd:Smed_4107 dienelactone hydrolase
YP_004556722.1	KEGG: smd:Smed_4109 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004556723.1	KEGG: smd:Smed_4110 transketolase domain-containing protein; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component; SMART: Transketolase-like, pyrimidine-binding domain
YP_004556724.1	KEGG: smd:Smed_4111 dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004556725.1	KEGG: smd:Smed_4112 putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter
YP_004556726.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4113 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556727.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4114 monosaccharide-transporting ATPase
YP_004556728.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4115 monosaccharide-transporting ATPase
YP_004556729.1	KEGG: smd:Smed_4116 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556730.1	KEGG: smd:Smed_4117 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SMART: Fibronectin, type III
YP_004556731.1	PFAM: Vitamin K epoxide reductase; NAD-dependent epimerase/dehydratase; SPW repeat; KEGG: smd:Smed_4120 vitamin K epoxide reductase
YP_004556732.1	PFAM: Zinc/iron permease; KEGG: smd:Smed_4121 zinc/iron permease
YP_004556733.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rpc:RPC_2739 alpha/beta hydrolase fold
YP_004556734.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bgl:bglu_2g19070 transcriptional regulator, LysR family protein
YP_004556735.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: smd:Smed_4122 ATP-dependent DNA ligase
YP_004556736.1	KEGG: smd:Smed_4123 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive
YP_004556737.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: smd:Smed_4124 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004556738.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: smd:Smed_4125 glutathione S-transferase domain-containing protein
YP_004556739.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4126 LysR family transcriptional regulator
YP_004556740.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_4127 pyrroline-5-carboxylate reductase
YP_004556741.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4132 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556742.1	KEGG: smd:Smed_4133 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
YP_004556743.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4134 binding-protein-dependent transport systems inner membrane component
YP_004556744.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4136 extracellular solute-binding protein
YP_004556745.1	KEGG: rhi:NGR_b00300 putative plasmid stability protein
YP_004556746.1	PFAM: PilT protein, N-terminal; KEGG: nha:Nham_4575 PilT protein-like
YP_004556747.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: smd:Smed_4137 regulatory protein LacI
YP_004556748.1	KEGG: smd:Smed_4138 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004556749.1	KEGG: smd:Smed_4139 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4
YP_004556750.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4140 extracellular solute-binding protein
YP_004556751.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4141 binding-protein-dependent transport systems inner membrane component
YP_004556752.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4142 binding-protein-dependent transport systems inner membrane component
YP_004556753.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4143 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556754.1	KEGG: smd:Smed_4144 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4; Glycosyl hydrolase, family 4, C-terminal
YP_004556755.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_4145 hypothetical protein
YP_004556756.1	KEGG: smd:Smed_4146 PaaX family transcriptional regulator; TIGRFAM: Phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal
YP_004556757.1	KEGG: smd:Smed_4147 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic
YP_004556758.1	KEGG: rhi:NGR_c26180 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B
YP_004556759.1	KEGG: smd:Smed_4149 phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic
YP_004556760.1	KEGG: smd:Smed_4150 phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59
YP_004556761.1	KEGG: smd:Smed_4151 phenylacetate-CoA oxygenase/reductase, PaaK subunit; TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding
YP_004556762.1	TIGRFAM: Phenylacetic acid degradation protein PaaN; KEGG: smd:Smed_4152 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; PFAM: Aldehyde dehydrogenase domain; MaoC-like dehydratase
YP_004556763.1	PFAM: Thioesterase superfamily; KEGG: smd:Smed_4153 thioesterase superfamily protein
YP_004556764.1	TIGRFAM: Phenylacetate degradation probable enoyl-CoA hydratase PaaB; KEGG: smd:Smed_4154 enoyl-CoA hydratase; PFAM: Crotonase, core
YP_004556765.1	KEGG: smd:Smed_4155 3-hydroxybutyryl-CoA epimerase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004556766.1	KEGG: smd:Smed_4156 carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004556767.1	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: smd:Smed_4157 saccharopine dehydrogenase
YP_004556768.1	KEGG: smd:Smed_4158 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004556769.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4159 extracellular solute-binding protein
YP_004556770.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4160 binding-protein-dependent transport systems inner membrane component
YP_004556771.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4161 binding-protein-dependent transport systems inner membrane component
YP_004556772.1	PFAM: Protein of unknown function DUF1680; KEGG: smd:Smed_4162 hypothetical protein
YP_004556773.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4163 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556774.1	PFAM: Rv0623-like transcription factor; KEGG: mes:Meso_4324 Rv0623-like transcription factor
YP_004556775.1	PFAM: CopG-like DNA-binding; KEGG: mea:Mex_2p0928 hypothetical protein
YP_004556776.1	PFAM: Plasmid stabilisation system; KEGG: pde:Pden_0144 plasmid stabilization system protein
YP_004556777.1	PFAM: Initiation factor 2B-related; TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; KEGG: smd:Smed_5890 methylthioribose-1-phosphate isomerase
YP_004556778.1	TIGRFAM: Methylthioribose kinase; KEGG: smd:Smed_5889 methylthioribose kinase; PFAM: Aminoglycoside phosphotransferase
YP_004556779.1	PFAM: ABC transporter-like; KEGG: oan:Oant_4830 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556780.1	PFAM: ABC transporter permease; KEGG: smd:Smed_5887 monosaccharide-transporting ATPase
YP_004556781.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: oan:Oant_4828 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_004556782.1	PFAM: Sugar-binding domain, putative; KEGG: smd:Smed_5885 DeoR family transcriptional regulator
YP_004556783.1	KEGG: rhi:NGR_b02900 thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase
YP_004556784.1	PFAM: Thiazole biosynthesis; KEGG: smd:Smed_4171 thiazole synthase
YP_004556785.1	KEGG: smd:Smed_4172 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_004556786.1	KEGG: smd:Smed_4173 glycine oxidase ThiO; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase
YP_004556787.1	KEGG: smd:Smed_4174 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC
YP_004556788.1	KEGG: smd:Smed_4175 hypothetical protein
YP_004556789.1	KEGG: smd:Smed_4176 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_004556790.1	KEGG: smd:Smed_4177 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004556791.1	KEGG: smd:Smed_4178 C4-dicarboxylate transporter DctA; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter
YP_004556792.1	KEGG: smd:Smed_4179 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004556793.1	KEGG: smd:Smed_4180 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004556794.1	KEGG: smd:Smed_4181 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004556795.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_4182 activator of HSP90 ATPase 1 family protein
YP_004556796.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_4183 glutathione-dependent formaldehyde-activating GFA
YP_004556797.1	TIGRFAM: ABC transporter, urea, substrate-binding, UrtA; KEGG: rhi:NGR_b21780 ABC transporter, substrate binding protein
YP_004556798.1	KEGG: smd:Smed_4185 inner-membrane translocator; TIGRFAM: ABC transporter, urea, permease protein, UrtB; PFAM: ABC transporter permease
YP_004556799.1	KEGG: rhi:NGR_b21760 probable UreA or short-chain amide ABC transporter, permease protein; TIGRFAM: ABC transporter, urea, permease protein, UrtC; PFAM: ABC transporter permease
YP_004556800.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtD; KEGG: smd:Smed_4187 ABC transporter related; PFAM: ABC transporter-like
YP_004556801.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtE; KEGG: smd:Smed_4188 ABC transporter related; PFAM: ABC transporter-like
YP_004556802.1	KEGG: smd:Smed_4189 hypothetical protein
YP_004556803.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: RepB plasmid partition; ParB-like nuclease; KEGG: rhi:NGR_b21660 RepB2 replication protein; SMART: ParB-like nuclease
YP_004556804.1	KEGG: smd:Smed_4191 cobyrinic acid ac-diamide synthase; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase; HTH transcriptional regulator, MerR
YP_004556805.1	PFAM: Uncharacterised protein family YphA; KEGG: rhi:NGR_b21610 DoxX family protein
YP_004556806.1	KEGG: smd:Smed_4194 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core
YP_004556807.1	PFAM: Blue (type 1) copper domain; KEGG: smd:Smed_4195 blue (type1) copper domain-containing protein
YP_004556808.1	KEGG: smd:Smed_4196 hypothetical protein
YP_004556809.1	KEGG: smd:Smed_4197 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004556810.1	PFAM: Acylphosphatase-like; KEGG: smd:Smed_4198 acylphosphatase
YP_004556811.1	TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; KEGG: rhi:NGR_b21430 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004556812.1	PFAM: Coenzyme A transferase; KEGG: rhi:NGR_b21420 probable CoA transferase, subunit B; SMART: Coenzyme A transferase
YP_004556813.1	PFAM: Coenzyme A transferase; KEGG: rhi:NGR_b21410 probable CoA transferase, subunit A; SMART: Coenzyme A transferase
YP_004556814.1	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: rhi:NGR_b21400 putative transcriptional regulator PcaR, IclR family; SMART: Transcription regulator IclR, N-terminal
YP_004556815.1	TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: smd:Smed_4199 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase
YP_004556816.1	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: smd:Smed_4200 oxidoreductase molybdopterin binding
YP_004556817.1	TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: smd:Smed_4202 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding
YP_004556818.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4203 LysR family transcriptional regulator
YP_004556819.1	KEGG: smd:Smed_4204 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004556820.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_004556821.1	KEGG: smd:Smed_4205 LysR family transcriptional regulator; TIGRFAM: Pca transcription factor PcaQ; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_004556822.1	TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: smd:Smed_4206 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1
YP_004556823.1	TIGRFAM: 4-carboxymuconolactone decarboxylase; KEGG: smd:Smed_4207 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase
YP_004556824.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: smd:Smed_4208 protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_004556825.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: smd:Smed_4209 protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_004556826.1	TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; KEGG: smd:Smed_4210 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Lyase 1, N-terminal
YP_004556827.1	TIGRFAM: Malto-oligosyltrehalose synthase; KEGG: smd:Smed_4211 maltooligosyl trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain
YP_004556828.1	KEGG: smd:Smed_4212 NADPH-dependent FMN reductase; TIGRFAM: FMN reductase, MsuE-like; PFAM: NADPH-dependent FMN reductase
YP_004556829.1	KEGG: smd:Smed_4213 putative nitrilotriacetate monooxygenase component A protein; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Luciferase-like, subgroup
YP_004556830.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4214 binding-protein-dependent transport systems inner membrane component
YP_004556831.1	KEGG: smd:Smed_4215 NMT1/THI5-like domain-containing protein
YP_004556832.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4216 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556833.1	PFAM: Extracellular ligand-binding receptor; KEGG: smd:Smed_4217 extracellular ligand-binding receptor
YP_004556834.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4218 inner-membrane translocator
YP_004556835.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4219 inner-membrane translocator
YP_004556836.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4220 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556837.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4221 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556838.1	KEGG: smd:Smed_0057 putative CHASE2 sensor protein; PFAM: CHASE2; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004556839.1	KEGG: smd:Smed_0058 TonB-dependent receptor; PFAM: FecR protein; SMART: Tetratricopeptide repeat
YP_004556840.1	KEGG: smd:Smed_0059 hypothetical protein
YP_004556841.1	KEGG: smd:Smed_4222 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004556842.1	KEGG: smd:Smed_4223 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
YP_004556843.1	KEGG: smd:Smed_4224 hypothetical protein
YP_004556844.1	KEGG: smd:Smed_4225 hypothetical protein
YP_004556845.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4226 hypothetical protein
YP_004556846.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4227 xylose isomerase domain-containing protein
YP_004556847.1	KEGG: smd:Smed_4228 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase
YP_004556848.1	TIGRFAM: Phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: smd:Smed_4229 hexapaptide repeat-containing transferase
YP_004556849.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnL; KEGG: smd:Smed_4230 phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter-like
YP_004556850.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnK; KEGG: smd:Smed_4231 phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter-like
YP_004556851.1	PFAM: Phosphonate metabolism PhnJ; KEGG: smd:Smed_4232 phosphonate metabolism PhnJ
YP_004556852.1	PFAM: Phosphonate metabolism; KEGG: smd:Smed_4233 phosphonate metabolism
YP_004556853.1	KEGG: smd:Smed_4234 carbon-phosphorus lyase complex subunit; TIGRFAM: Bacterial phosphonate metabolism; PFAM: Bacterial phosphonate metabolism
YP_004556854.1	KEGG: smd:Smed_4235 phosphonate metabolism PhnG; TIGRFAM: Phosphonate metabolism PhnG; PFAM: Phosphonate metabolism PhnG
YP_004556855.1	TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: smd:Smed_4236 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004556856.1	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: smd:Smed_4237 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding
YP_004556857.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: smd:Smed_4238 carbamoyl-phosphate synthase L chain ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_004556858.1	KEGG: smd:Smed_4239 carboxyl transferase; PFAM: Carboxyl transferase
YP_004556859.1	KEGG: smd:Smed_4240 hypothetical protein; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004556860.1	KEGG: smd:Smed_4241 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004556861.1	KEGG: smd:Smed_4242 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core
YP_004556862.1	TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: smd:Smed_4243 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004556863.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_4244 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004556864.1	KEGG: smd:Smed_4245 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal
YP_004556865.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4246 glycosyl transferase family protein
YP_004556866.1	KEGG: smd:Smed_4249 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004556867.1	KEGG: smd:Smed_4250 hypothetical protein
YP_004556868.1	KEGG: smd:Smed_4251 glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004556869.1	manually curated; KEGG: smd:Smed_4254 hypothetical protein
YP_004556870.1	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: smd:Smed_4255 hypothetical protein
YP_004556871.1	KEGG: smd:Smed_4256 putative tricarboxylic transport membrane protein
YP_004556872.1	KEGG: rhi:NGR_b20620 TRAP-T family transporter, periplasmic binding protein
YP_004556873.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4258 putative iron ABC transporter periplasmic solute-binding protein precursor
YP_004556874.1	KEGG: smd:Smed_4259 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004556875.1	KEGG: smd:Smed_4260 integral membrane sensor signal transduction histidine kinase; PFAM: Two-component sensor kinase N-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004556876.1	KEGG: smd:Smed_4261 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_004556877.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4262 monosaccharide-transporting ATPase
YP_004556878.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4263 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556879.1	KEGG: smd:Smed_4264 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556880.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_2431 hypothetical protein
YP_004556881.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_2432 LysR family transcriptional regulator
YP_004556882.1	KEGG: smd:Smed_4265 hypothetical protein
YP_004556883.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4266 monosaccharide-transporting ATPase
YP_004556884.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4267 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556885.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4268 periplasmic binding protein/LacI transcriptional regulator
YP_004556886.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4269 xylose isomerase domain-containing protein
YP_004556887.1	KEGG: smd:Smed_4270 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004556889.1	TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: Methylpurine-DNA glycosylase (MPG); KEGG: smd:Smed_4271 3-methyladenine DNA glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG)
YP_004556890.1	KEGG: smd:Smed_4272 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
YP_004556891.1	KEGG: smd:Smed_4273 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004556892.1	KEGG: smd:Smed_4274 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004556893.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4275 hypothetical protein
YP_004556894.1	TIGRFAM: Glycogen/starch synthases, ADP-glucose type; KEGG: smd:Smed_4276 glycogen synthase; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1
YP_004556895.1	KEGG: smd:Smed_4277 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP
YP_004556896.1	SMART: Signal transduction response regulator, C-terminal; manually curated; KEGG: smd:Smed_4280 transcriptional regulator domain-containing protein; PFAM: Signal transduction response regulator, C-terminal
YP_004556897.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4281 NmrA family protein
YP_004556898.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4282 cupin 2 domain-containing protein
YP_004556899.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_4283 secretion protein HlyD family protein
YP_004556900.1	KEGG: smd:Smed_4284 major facilitator transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004556901.1	PFAM: Peptidase M20; KEGG: smd:Smed_4285 peptidase M20
YP_004556902.1	TIGRFAM: Conserved hypothetical protein CHP02293; KEGG: rlg:Rleg_5272 hypothetical protein
YP_004556903.1	KEGG: rle:pRL120084 hypothetical protein; PFAM: RES; SMART: RES
YP_004556904.1	KEGG: vap:Vapar_3338 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556905.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: smd:Smed_4299 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_004556906.1	KEGG: smd:Smed_4300 hypothetical protein
YP_004556907.1	KEGG: smd:Smed_4301 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Tetratricopeptide repeat
YP_004556908.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: smd:Smed_4302 Ku family containing protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_004556909.1	KEGG: smd:Smed_4303 DNA ligase D; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_004556910.1	KEGG: smd:Smed_4304 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein; PFAM: Domain of unknown function DUF861, cupin-3; Cupin 2, conserved barrel
YP_004556911.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4305 LysR family transcriptional regulator
YP_004556912.1	KEGG: smd:Smed_4307 transcriptional regulator IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004556913.1	TIGRFAM: Glyoxylate carboligase; KEGG: smd:Smed_4308 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_004556914.1	TIGRFAM: Hydroxypyruvate isomerase; KEGG: smd:Smed_4309 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004556915.1	TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: smd:Smed_4310 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004556916.1	KEGG: smd:Smed_4311 hydroxypyruvate reductase; PFAM: MOFRL domain
YP_004556917.1	HAMAP: Ureidoglycolate hydrolase; KEGG: smd:Smed_4312 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase
YP_004556918.1	PFAM: Protein of unknown function DUF930; KEGG: smd:Smed_4313 hypothetical protein
YP_004556919.1	PFAM: Protein of unknown function DUF1349; KEGG: smd:Smed_4314 hypothetical protein
YP_004556920.1	KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004556921.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4316 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556922.1	PFAM: ABC transporter permease; Photosystem II PsbL; KEGG: smd:Smed_4317 monosaccharide-transporting ATPase
YP_004556923.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4318 periplasmic binding protein/LacI transcriptional regulator
YP_004556924.1	PFAM: Protein of unknown function, DUF1537; KEGG: smd:Smed_4319 type III effector Hrp-dependent outers
YP_004556925.1	KEGG: smd:Smed_4320 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004556926.1	KEGG: smd:Smed_4321 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004556927.1	KEGG: smd:Smed_4322 regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004556928.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: smd:Smed_4323 putative aldolase
YP_004556929.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: rhi:NGR_c05360 putative transposase for insertion sequence NGRIS-21a
YP_004556930.1	KEGG: smd:Smed_4324 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004556931.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4325 NAD-dependent epimerase/dehydratase
YP_004556932.1	KEGG: smd:Smed_4326 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556933.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: smd:Smed_4327 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004556934.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4328 extracellular solute-binding protein
YP_004556935.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4329 binding-protein-dependent transport systems inner membrane component
YP_004556936.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4330 binding-protein-dependent transport systems inner membrane component
YP_004556937.1	KEGG: smd:Smed_4331 hypothetical protein
YP_004556938.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_4332 aldo/keto reductase
YP_004556939.1	KEGG: rhi:NGR_b20200 3-demethylubiquinone-9 3-methyltransferase
YP_004556940.1	manually curated; KEGG: smd:Smed_4333 hypothetical protein
YP_004556941.1	KEGG: rhi:NGR_b19220 hypothetical protein
YP_004556942.1	TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: smd:Smed_4334 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II
YP_004556943.1	KEGG: smd:Smed_4335 hypothetical protein
YP_004556944.1	KEGG: smd:Smed_4336 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004556945.1	TIGRFAM: NAD synthase; KEGG: smd:Smed_4337 NAD synthetase; PFAM: NAD/GMP synthase
YP_004556946.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: rhi:NGR_c27500 putative oxidoreductase protein
YP_004556947.1	KEGG: smd:Smed_4339 hypothetical protein
YP_004556948.1	TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: smd:Smed_4340 septum formation inhibitor; PFAM: Septum formation inhibitor MinC, C-terminal
YP_004556949.1	KEGG: smd:Smed_4341 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004556950.1	TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: smd:Smed_4342 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE
YP_004556951.1	KEGG: smd:Smed_4343 exported protein, glycine-rich
YP_004556952.1	KEGG: smd:Smed_4344 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004556953.1	KEGG: smd:Smed_4345 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004556954.1	KEGG: smd:Smed_4346 hypothetical protein
YP_004556955.1	KEGG: smd:Smed_4347 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain
YP_004556956.1	KEGG: smd:Smed_4348 ErfK/YbiS/YcfS/YnhG family protein; manually curated; PFAM: YkuD domain
YP_004556957.1	KEGG: smd:Smed_4349 hypothetical protein
YP_004556958.1	manually curated; TIGRFAM: Modification methylase HemK; KEGG: smd:Smed_4350 HemK family modification methylase; PFAM: Methyltransferase small
YP_004556959.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4351 polysaccharide biosynthesis protein
YP_004556960.1	KEGG: smd:Smed_4352 hypothetical protein
YP_004556961.1	KEGG: rhi:NGR_b00160 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase
YP_004556962.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_4353 lipopolysaccharide biosynthesis protein
YP_004556963.1	KEGG: smd:Smed_4354 O-antigen polymerase
YP_004556964.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4355 polysaccharide deacetylase
YP_004556965.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4356 glycosyl transferase group 1
YP_004556966.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4357 glycosyl transferase group 1
YP_004556967.1	KEGG: smd:Smed_4358 hypothetical protein
YP_004556968.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4359 glycosyl transferase family protein
YP_004556969.1	PFAM: Glycoside hydrolase, family 5; KEGG: smd:Smed_4360 hypothetical protein
YP_004556970.1	KEGG: smd:Smed_4361 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein
YP_004556971.1	KEGG: smd:Smed_4362 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004556972.1	KEGG: rhi:NGR_b18900 hypothetical protein
YP_004556973.1	KEGG: rhi:NGR_b18880 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin
YP_004556974.1	KEGG: smd:Smed_4365 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004556975.1	PFAM: Protein of unknown function DUF922; KEGG: smd:Smed_4366 hypothetical protein
YP_004556976.1	PFAM: Protein of unknown function DUF992; KEGG: smd:Smed_4367 hypothetical protein
YP_004556977.1	PFAM: Surfeit locus 1; KEGG: smd:Smed_4368 surfeit locus 1 family protein
YP_004556978.1	KEGG: smd:Smed_4369 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic
YP_004556979.1	KEGG: rhi:NGR_b18820 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III
YP_004556980.1	KEGG: smd:Smed_4371 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I
YP_004556981.1	KEGG: smd:Smed_4372 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal
YP_004556982.1	PFAM: General substrate transporter; KEGG: smd:Smed_4373 general substrate transporter
YP_004556983.1	KEGG: smd:Smed_4374 hypothetical protein
YP_004556984.1	KEGG: rhi:NGR_b18760 hypothetical protein
YP_004556985.1	KEGG: smd:Smed_4376 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004556986.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_4377 hypothetical protein
YP_004556987.1	KEGG: smd:Smed_4378 hypothetical protein
YP_004556988.1	KEGG: smd:Smed_4379 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004556989.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4380 hypothetical protein
YP_004556990.1	KEGG: smd:Smed_4381 hypothetical protein
YP_004556991.1	KEGG: smd:Smed_4382 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004556992.1	KEGG: smd:Smed_4383 hypothetical protein
YP_004556993.1	PFAM: Low affinity iron permease, Fet4; KEGG: smd:Smed_6346 hypothetical protein
YP_004556994.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4385 hypothetical protein
YP_004556995.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4386 hypothetical protein
YP_004556996.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4387 hypothetical protein
YP_004556997.1	PFAM: Protein of unknown function DUF475; KEGG: smd:Smed_4388 hypothetical protein
YP_004556998.1	KEGG: smd:Smed_4389 hypothetical protein
YP_004556999.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: smd:Smed_4390 type I secretion system ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004557000.1	KEGG: smd:Smed_4391 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004557001.1	KEGG: smd:Smed_4392 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004557002.1	KEGG: smd:Smed_4393 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 4; Glycosyl hydrolase, family 4, C-terminal
YP_004557003.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_4394 ribokinase-like domain-containing protein
YP_004557004.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4395 extracellular solute-binding protein
YP_004557005.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4396 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557006.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4397 binding-protein-dependent transport systems inner membrane component
YP_004557007.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4398 binding-protein-dependent transport systems inner membrane component
YP_004557008.1	KEGG: smd:Smed_4399 hypothetical protein
YP_004557009.1	PFAM: Protein of unknown function DUF763; KEGG: smd:Smed_4400 hypothetical protein
YP_004557010.1	KEGG: smd:Smed_4401 hypothetical protein
YP_004557011.1	KEGG: smd:Smed_4402 hypothetical protein
YP_004557012.1	KEGG: smd:Smed_4403 hypothetical protein
YP_004557013.1	KEGG: smd:Smed_4404 hypothetical protein
YP_004557014.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4405 hypothetical protein
YP_004557015.1	KEGG: smd:Smed_4407 phage SPO1 DNA polymerase-related protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_004557016.1	TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: smd:Smed_4408 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Malto-oligosyltrehalose trehalohydrolase, bacterial, C-terminal; Glycoside hydrolase, family 13, N-terminal
YP_004557017.1	TIGRFAM: Glycogen debranching enzyme; KEGG: smd:Smed_4409 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_004557018.1	PFAM: DNA topoisomerase I, catalytic core, eukaryotic-type; KEGG: smd:Smed_4410 putative DNA topoisomerase I protein
YP_004557019.1	KEGG: smd:Smed_4411 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_004557020.1	KEGG: smd:Smed_4412 hypothetical protein
YP_004557021.1	PFAM: Protein of unknown function DUF2934; KEGG: smd:Smed_4413 hypothetical protein
YP_004557022.1	KEGG: smd:Smed_4414 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004557023.1	KEGG: smd:Smed_4415 hypothetical protein
YP_004557024.1	KEGG: smd:Smed_4416 hypothetical protein
YP_004557025.1	KEGG: azc:AZC_1946 putative translation initiation inhibitor protein
YP_004557026.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4417 methyltransferase type 11
YP_004557027.1	PFAM: Periplasmic binding protein; KEGG: smd:Smed_4418 periplasmic binding protein
YP_004557028.1	PFAM: ABC transporter permease protein; KEGG: smd:Smed_4419 transport system permease protein
YP_004557029.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4420 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557030.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: rhi:NGR_c24400 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_004557031.1	KEGG: rhi:NGR_c24390 putative acetyltransferase protein
YP_004557032.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_c24380 hypothetical protein
YP_004557033.1	PFAM: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase; KEGG: rhi:NGR_c24370 cephalosporin hydroxylase
YP_004557034.1	PFAM: Transposase, IS4-like; KEGG: rle:pRL70077 putative transposase
YP_004557035.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004557036.1	KEGG: rle:pRL70077 putative transposase
YP_004557037.1	PFAM: C-methyltransferase; Methyltransferase type 11; Methyltransferase hyptothetical; KEGG: rhi:NGR_c24360 putative SAM-dependent methyltransferase
YP_004557038.1	TIGRFAM: CDP-glucose 4,6-dehydratase; KEGG: rhi:NGR_c24350 CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004557039.1	TIGRFAM: Glucose-1-phosphate cytidylyltransferase; KEGG: rhi:NGR_c24340 LPS side chain defect: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase
YP_004557040.1	KEGG: smd:Smed_4422 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like
YP_004557041.1	KEGG: smd:Smed_4423 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_004557042.1	KEGG: smd:Smed_4424 calcium-binding EF-hand-containing protein
YP_004557043.1	PFAM: Protein of unknown function DUF488; KEGG: rhi:NGR_c24300 hypothetical protein
YP_004557044.1	KEGG: smd:Smed_4426 hypothetical protein
YP_004557045.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4427 methyltransferase type 11
YP_004557046.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: smd:Smed_1427 Ku family containing protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_004557047.1	KEGG: smd:Smed_1426 Ku family containing protein; TIGRFAM: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_004557048.1	KEGG: bja:bll2273 hypothetical protein; manually curated; PFAM: Isochorismatase-like
YP_004557049.1	KEGG: bgl:bglu_2g18990 hypothetical protein
YP_004557050.1	KEGG: ilo:IL1545 thioredoxin-like domain-containing protein
YP_004557051.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4565 hemolysin-type calcium-binding region
YP_004557053.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_004557054.1	PFAM: Protein of unknown function DUF3606; KEGG: smd:Smed_6347 hypothetical protein
YP_004557055.1	KEGG: smd:Smed_4828 hypothetical protein
YP_004557056.1	KEGG: smd:Smed_4834 hypothetical protein
YP_004557057.1	KEGG: esc:Entcl_2744 cell wall surface anchor family protein
YP_004557058.1	KEGG: dal:Dalk_3504 inner-membrane translocator
YP_004557059.1	KEGG: smd:Smed_1865 hypothetical protein
YP_004557060.1	KEGG: rhi:NGR_b12560 hypothetical protein
YP_004557061.1	KEGG: smd:Smed_1307 hypothetical protein
YP_004557062.1	KEGG: smd:Smed_1306 hypothetical protein
YP_004557063.1	KEGG: smd:Smed_4839 hypothetical protein
YP_004557064.1	KEGG: avi:Avi_9044 hypothetical protein
YP_004557065.1	KEGG: smd:Smed_6052 hypothetical protein
YP_004557066.1	KEGG: cqu:CpipJ_CPIJ008587 hypothetical protein
YP_004557067.1	KEGG: pth:PTH_2564 hypothetical protein
YP_004557068.1	KEGG: ara:Arad_3653 hypothetical protein
YP_004557069.1	KEGG: mno:Mnod_5803 hypothetical protein
YP_004557070.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4465 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557071.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4466 inner-membrane translocator
YP_004557072.1	TIGRFAM: D-xylose ABC transporter, substrate-binding protein; KEGG: smd:Smed_4467 D-xylose ABC transporter, periplasmic substrate-binding protein
YP_004557074.1	PFAM: ROK; KEGG: smd:Smed_4468 putative transcriptional regulator protein
YP_004557075.1	KEGG: smd:Smed_4469 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_004557076.1	KEGG: tbr:Tb927.5.3940 helicase
YP_004557077.1	KEGG: smd:Smed_4470 hypothetical protein
YP_004557078.1	KEGG: smd:Smed_4471 hypothetical protein
YP_004557079.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4472 LysR family transcriptional regulator
YP_004557080.1	KEGG: smd:Smed_4473 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_004557081.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557082.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c24130 ABC transporter (sugar), membrane spanning protein
YP_004557083.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: smd:Smed_4476 hypothetical protein
YP_004557084.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_4477 aldehyde dehydrogenase
YP_004557085.1	KEGG: smd:Smed_4478 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004557086.1	KEGG: smd:Smed_4480 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like
YP_004557087.1	PFAM: Domain of unknown function DUF403; KEGG: smd:Smed_4481 hypothetical protein
YP_004557088.1	PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; KEGG: rhi:NGR_c24070 hypothetical protein
YP_004557089.1	PFAM: Drug/metabolite transporter; KEGG: smd:Smed_4483 hypothetical protein
YP_004557090.1	KEGG: rhi:NGR_b08490 hypothetical protein
YP_004557091.1	KEGG: rhi:NGR_b08500 hypothetical protein
YP_004557092.1	KEGG: avi:Avi_9870 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF411
YP_004557093.1	KEGG: smd:Smed_4484 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004557094.1	PFAM: Host attachment protein; KEGG: smd:Smed_4485 hypothetical protein
YP_004557095.1	KEGG: smd:Smed_4486 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF752
YP_004557096.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4487 FAD dependent oxidoreductase
YP_004557097.1	PFAM: Protein of unknown function DUF1045; KEGG: smd:Smed_4488 hypothetical protein
YP_004557098.1	TIGRFAM: Putative urate catabolism protein; KEGG: smd:Smed_4489 chitin deacetylase; PFAM: Polysaccharide deacetylase
YP_004557099.1	KEGG: smd:Smed_4490 hypothetical protein; TIGRFAM: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
YP_004557100.1	HAMAP: Ureidoglycolate hydrolase; KEGG: smd:Smed_4491 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase
YP_004557101.1	TIGRFAM: Hydroxyisourate hydrolase; KEGG: rhi:NGR_c23950 putative purine catabolism-related protein; PFAM: Transthyretin/hydroxyisourate hydrolase
YP_004557102.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5828 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004557103.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5829 LysR family transcriptional regulator
YP_004557104.1	KEGG: ret:RHE_PF00225 two-component response regulator protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004557105.1	KEGG: ret:RHE_PF00224 putative two-component response regulator protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004557107.1	TIGRFAM: PAS; PFAM: MASE1; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: rlt:Rleg2_5459 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004557108.1	KEGG: atu:Atu4307 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004557109.1	KEGG: smd:Smed_5821 NmrA family protein
YP_004557110.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_5822 cupin 2 domain-containing protein
YP_004557111.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_5823 MscS mechanosensitive ion channel
YP_004557112.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: smd:Smed_5824 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004557113.1	KEGG: smd:Smed_5825 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1
YP_004557114.1	KEGG: smd:Smed_5827 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004557115.1	HAMAP: Glucose-6-phosphate isomerase, subgroup; KEGG: smd:Smed_2463 glucose-6-phosphate isomerase; PFAM: Glucose-6-phosphate isomerase, prokaryote
YP_004557116.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_2475 monosaccharide-transporting ATPase
YP_004557117.1	PFAM: ABC transporter-like; KEGG: smd:Smed_2474 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557118.1	PFAM: ABC transporter permease; KEGG: smd:Smed_2473 monosaccharide-transporting ATPase
YP_004557119.1	KEGG: vei:Veis_2683 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004557120.1	KEGG: vei:Veis_2684 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal
YP_004557121.1	PFAM: Sugar-binding domain, putative; KEGG: vei:Veis_2685 DeoR family transcriptional regulator
YP_004557122.1	KEGG: smd:Smed_4493 L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent dehydrogenase
YP_004557123.1	TIGRFAM: Guanine deaminase; KEGG: rhi:NGR_c23930 guanine deaminase; PFAM: Amidohydrolase 1
YP_004557124.1	PFAM: Protein of unknown function DUF989; Cytochrome c, class I; KEGG: smd:Smed_4495 hypothetical protein
YP_004557125.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4496 LysR family transcriptional regulator
YP_004557126.1	KEGG: smd:Smed_4497 hypothetical protein
YP_004557127.1	TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: smd:Smed_4498 xanthine dehydrogenase molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004557128.1	TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: smd:Smed_4499 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; Ferredoxin; CO dehydrogenase flavoprotein, C-terminal; [2Fe-2S]-binding
YP_004557129.1	TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: smd:Smed_4500 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557130.1	TIGRFAM: Glycerol kinase; KEGG: smd:Smed_4501 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004557131.1	KEGG: smd:Smed_4502 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004557132.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: smd:Smed_4503 activator of HSP90 ATPase 1 family protein
YP_004557133.1	KEGG: mes:Meso_0629 hypothetical protein
YP_004557134.1	PFAM: Protein of unknown function DUF1801; KEGG: smd:Smed_4505 hypothetical protein
YP_004557135.1	PFAM: Protein of unknown function DUF1801; KEGG: smd:Smed_4506 hypothetical protein
YP_004557136.1	KEGG: smd:Smed_4507 luciferase family protein; TIGRFAM: Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative; PFAM: Luciferase-like, subgroup
YP_004557137.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: smd:Smed_4508 methionine aminopeptidase; PFAM: Peptidase M24, structural domain
YP_004557138.1	PFAM: Transposase, IS4-like; KEGG: ret:RHE_PD00041 insertion sequence transposase protein
YP_004557139.1	PFAM: Domain of unknown function DUF1228; KEGG: smd:Smed_4509 hypothetical protein
YP_004557140.1	PFAM: SbmA/BacA-like; KEGG: smd:Smed_4510 transport protein
YP_004557141.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4511 hypothetical protein
YP_004557142.1	KEGG: smd:Smed_4512 NnrU family protein
YP_004557143.1	PFAM: Protein of unknown function DUF2133; KEGG: smd:Smed_4513 hypothetical protein
YP_004557144.1	TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: smd:Smed_4514 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related
YP_004557145.1	KEGG: smd:Smed_4515 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004557146.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: smd:Smed_4516 acyl-CoA dehydrogenase type 2
YP_004557147.1	KEGG: smd:Smed_4517 hypothetical protein
YP_004557148.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smd:Smed_4518 FAD dependent oxidoreductase
YP_004557149.1	PFAM: Nodulation efficiency, NfeD; KEGG: smd:Smed_4519 hypothetical protein
YP_004557150.1	KEGG: smd:Smed_4520 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004557151.1	PFAM: NUDIX hydrolase domain; KEGG: smd:Smed_4521 NUDIX hydrolase
YP_004557152.1	KEGG: smd:Smed_4522 siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain
YP_004557153.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; BFD-like [2Fe-2S]-binding domain; KEGG: smd:Smed_4523 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004557154.1	KEGG: smd:Smed_4524 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004557155.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: smd:Smed_4525 nitrite reductase (NAD(P)H), large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase 4Fe-4S domain; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004557156.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: smd:Smed_4968 TRAP dicarboxylate transporter-DctP subunit
YP_004557157.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_4967 tripartite ATP-independent periplasmic transporter DctQ
YP_004557158.1	KEGG: smd:Smed_4966 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004557159.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_4965 dehydratase
YP_004557160.1	KEGG: oan:Oant_2762 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004557161.1	KEGG: oan:Oant_2763 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004557162.1	KEGG: oan:Oant_2764 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557163.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: oan:Oant_2766 short-chain dehydrogenase/reductase SDR
YP_004557164.1	KEGG: cwo:Cwoe_2246 aminotransferase class-III; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase; Peptidase M23
YP_004557165.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pfl:PFL_3073 maltose/maltodextrin ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004557166.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bbe:BBR47_58050 probable ABC transporter substrate binding protein
YP_004557167.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_58040 probable ABC transporter permease protein
YP_004557168.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_58030 probable ABC transporter permease protein
YP_004557169.1	PFAM: Glycoside hydrolase, family 37; KEGG: str:Sterm_0716 hypothetical protein
YP_004557170.1	KEGG: oan:Oant_2762 alanine racemase; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004557171.1	KEGG: avi:Avi_5742 beta-galactosidase; PFAM: Glycoside hydrolase, family 42, N-terminal; Beta-galactosidase trimerisation; Beta-galactosidase C-terminal
YP_004557172.1	PFAM: Beta-lactamase-related; KEGG: smd:Smed_4964 beta-lactamase
YP_004557173.1	KEGG: smd:Smed_4963 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal
YP_004557174.1	TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: smd:Smed_4962 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_004557175.1	KEGG: bge:BC1002_0676 hypothetical protein
YP_004557176.1	KEGG: smd:Smed_4961 exopolysaccharide transport protein family; TIGRFAM: Exopolysaccharide transport protein; Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis; Cobyrinic acid a,c-diamide synthase
YP_004557177.1	KEGG: smd:Smed_4960 nucleotidyl transferase; PFAM: Nucleotidyl transferase
YP_004557178.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4959 glycosyl transferase family protein
YP_004557179.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4958 glycosyl transferase family protein
YP_004557180.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4957 glycosyl transferase family protein
YP_004557181.1	KEGG: smd:Smed_4956 putative glucosyltransferase protein
YP_004557182.1	KEGG: smd:Smed_4955 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 16
YP_004557183.1	KEGG: smd:Smed_4954 succinyltransferase protein
YP_004557184.1	KEGG: smd:Smed_4953 hypothetical protein
YP_004557185.1	KEGG: rhi:NGR_b18300 succinoglycan biosynthesis protein ExoI; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_004557186.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4951 polysaccharide biosynthesis protein
YP_004557187.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4950 glycosyl transferase family protein
YP_004557188.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: smd:Smed_4949 ExoV-like protein
YP_004557189.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4948 glycosyl transferase family protein
YP_004557190.1	KEGG: smd:Smed_4947 posttranscriptional regulator, repressor protein
YP_004557191.1	KEGG: smd:Smed_4946 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_004557192.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_4945 polysaccharide export protein
YP_004557193.1	PFAM: O-antigen ligase-related; KEGG: smd:Smed_4944 O-antigen polymerase
YP_004557194.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_4943 acyltransferase 3
YP_004557195.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: smd:Smed_4942 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004557196.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_4941 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557197.1	KEGG: smd:Smed_4939 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis
YP_004557198.1	KEGG: rhi:NGR_b18170 6-pyruvoyl tetrahydrobiopterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related
YP_004557199.1	KEGG: smd:Smed_4937 radical SAM domain-containing protein; TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; PFAM: Radical SAM
YP_004557200.1	PFAM: ABC transporter, N-terminal; ABC transporter-like; KEGG: smd:Smed_4936 ABC transporter
YP_004557201.1	KEGG: smd:Smed_4934 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004557202.1	KEGG: smd:Smed_4933 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004557203.1	TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, HWE region; PAS fold; PAS fold-4; GAF; PAS fold-3; KEGG: smd:Smed_4932 signal transduction histidine kinase; SMART: Signal transduction histidine kinase, HWE region; GAF; PAS; PAC motif
YP_004557204.1	PFAM: Glycoside hydrolase, family 16; Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4931 glycoside hydrolase family protein
YP_004557205.1	KEGG: smd:Smed_4930 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_004557206.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4929 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557207.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4928 monosaccharide-transporting ATPase
YP_004557208.1	KEGG: smd:Smed_4927 peptidase S41; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; Peptidase S41
YP_004557209.1	KEGG: smd:Smed_4924 hypothetical protein
YP_004557210.1	KEGG: smd:Smed_4923 peptidase M50; PFAM: Peptidase M50; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004557211.1	PFAM: Alpha-L-arabinofuranosidase, C-terminal; KEGG: ara:Arad_9457 alpha-L-arabinofuranosidase protein; SMART: Alpha-L-arabinofuranosidase, C-terminal
YP_004557212.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: atu:Atu3103 ABC transporter, nucleotide binding/ATPase protein (sugar); SMART: ATPase, AAA+ type, core
YP_004557213.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: hel:HELO_2790 ABC-type transport system periplasmic substrate-binding protein
YP_004557214.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3101 ABC transporter, membrane spanning protein (sugar)
YP_004557215.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: hel:HELO_2788 ABC-type transport system permease protein
YP_004557216.1	KEGG: rec:RHECIAT_PA0000152 probable transcriptional regulator protein, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004557217.1	KEGG: smd:Smed_4921 beta-lactamase; PFAM: Beta-lactamase-related
YP_004557218.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004557219.1	KEGG: smd:Smed_4920 hypothetical protein
YP_004557220.1	KEGG: smd:Smed_4919 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004557221.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_4918 oxidoreductase domain-containing protein
YP_004557222.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_4917 xylose isomerase domain-containing protein
YP_004557223.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4916 extracellular solute-binding protein
YP_004557224.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4915 binding-protein-dependent transport systems inner membrane component
YP_004557225.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4914 binding-protein-dependent transport systems inner membrane component
YP_004557226.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4913 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557227.1	KEGG: smd:Smed_4912 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004557228.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4911 inner membrane ABC transporter permease protein YjfF
YP_004557229.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4910 monosaccharide-transporting ATPase
YP_004557230.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4909 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557231.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4908 periplasmic binding protein/LacI transcriptional regulator
YP_004557232.1	KEGG: smd:Smed_4907 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal
YP_004557233.1	KEGG: smd:Smed_4906 hypothetical protein; TIGRFAM: Conserved hypothetical protein QEGLA; PFAM: Protein of unknown function DUF1704
YP_004557234.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rhi:NGR_b15440 hypothetical protein
YP_004557235.1	KEGG: smd:Smed_4901 hypothetical protein
YP_004557236.1	PFAM: Exopolysaccharide synthesis, ExoD; KEGG: smd:Smed_4900 exopolysaccharide synthesis ExoD
YP_004557237.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4899 glycosyl transferase group 1
YP_004557238.1	PFAM: SNARE associated Golgi protein; KEGG: rhi:NGR_b07190 putative inner membrane protein
YP_004557239.1	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: smd:Smed_4898 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_004557240.1	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Copper ion-binding; ATPase, P-type, heavy metal translocating; KEGG: smd:Smed_4897 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004557241.1	KEGG: smd:Smed_4894 hypothetical protein
YP_004557242.1	KEGG: smd:Smed_4893 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004557243.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4892 major facilitator transporter
YP_004557244.1	PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: smd:Smed_4890 ErfK/YbiS/YcfS/YnhG family protein
YP_004557245.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_4889 substrate-binding region of ABC-type glycine betaine transport system
YP_004557246.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_4888 TetR family transcriptional regulator
YP_004557247.1	KEGG: smd:Smed_4887 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004557248.1	KEGG: rle:pRL120520 hypothetical protein
YP_004557249.1	PFAM: Usg-like; KEGG: smd:Smed_1283 Usg family protein
YP_004557250.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: ret:RHE_CH01238 10 kDa chaperonin, heat shock protein; SMART: Chaperonin Cpn10
YP_004557251.1	KEGG: smd:Smed_1281 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_004557252.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: smd:Smed_1280 protein of unknown function DUF899 thioredoxin family protein
YP_004557253.1	KEGG: rlt:Rleg2_4741 hypothetical protein
YP_004557254.1	KEGG: rhi:NGR_c30280 hypothetical protein
YP_004557255.1	KEGG: rhi:NGR_c30290 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004557256.1	KEGG: rhi:NGR_c30300 sensor protein; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004557257.1	KEGG: rhi:NGR_b04790 putative transcriptional regulator protein, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004557258.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: rhi:NGR_b04780 hypothetical oxidoreductase with iron-sulfur subunit
YP_004557259.1	KEGG: rhi:NGR_b04770 probable hydroxylase molybdopterin-containing subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004557260.1	KEGG: rhi:NGR_b04760 putative aerobic-type carbon monoxide dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004557261.1	KEGG: smd:Smed_1212 potassium efflux system protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal
YP_004557262.1	KEGG: ret:RHE_PA00137 putative insertion sequence transposase protein
YP_004557263.1	KEGG: mlo:mlr3817 hypothetical protein
YP_004557264.1	manually curated; KEGG: ret:RHE_CH02150 aminoglycoside N6'-acetyltransferase protein
YP_004557265.1	manually curated; KEGG: smd:Smed_5897 hypothetical protein
YP_004557266.1	PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: mes:Meso_3786 protein of unknown function DUF395, YeeE/YedE
YP_004557267.1	KEGG: smd:Smed_5900 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004557268.1	TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain; KEGG: axy:AXYL_03160 outer membrane autotransporter barrel domain-containing protein 4; SMART: Autotransporter beta-domain
YP_004557269.1	PFAM: Signal transduction histidine kinase, internal region; KEGG: axy:AXYL_05786 histidine kinase family protein
YP_004557270.1	KEGG: azc:AZC_1299 two-component system regulatory protein; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain
YP_004557271.1	KEGG: smd:Smed_5279 hypothetical protein
YP_004557272.1	KEGG: smd:Smed_5278 peptidase domain-containing protein; PFAM: Peptidase M10B, serralysin, C-terminal; Haemolysin-type calcium-binding repeat; Peptidase, C-terminal, archaeal/bacterial; SMART: Peptidase, metallopeptidase
YP_004557273.1	KEGG: smd:Smed_4879 binding-protein-dependent transport systems inner membrane component; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein, putative; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557274.1	SMART: ATPase, AAA+ type, core; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2; KEGG: smd:Smed_4878 ABC transporter related; PFAM: ABC transporter-like
YP_004557275.1	KEGG: smd:Smed_4877 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: Bacterial extracellular solute-binding, family 1
YP_004557276.1	TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase; KEGG: smd:Smed_4876 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004557277.1	KEGG: smd:Smed_4875 phosphonoacetate hydrolase; TIGRFAM: Phosphonoacetate hydrolase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
YP_004557278.1	TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; KEGG: smd:Smed_4874 2-aminoethylphosphonate--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004557279.1	PFAM: Na/Pi-cotransporter; PhoU; KEGG: smd:Smed_4873 Na+ cotransporter
YP_004557280.1	KEGG: smd:Smed_4872 LysR family transcriptional regulator; TIGRFAM: Transcription regulator, aminoethylphosphonate utilisation-associated, LysR-type; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_004557281.1	TIGRFAM: Folate-binding, YgfZ; KEGG: smd:Smed_4871 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Glycine cleavage T-protein, N-terminal
YP_004557282.1	KEGG: smd:Smed_4870 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004557283.1	TIGRFAM: Phosphate acetyltransferase; KEGG: smd:Smed_4869 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase
YP_004557284.1	PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: smd:Smed_4868 hypothetical protein
YP_004557285.1	TIGRFAM: Sulphoacetaldehyde acetyltransferase; KEGG: smd:Smed_4867 sulfoacetaldehyde acetyltransferase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain
YP_004557286.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4863 FAD dependent oxidoreductase
YP_004557287.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_4862 hypothetical protein
YP_004557288.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4861 binding-protein-dependent transport systems inner membrane component
YP_004557289.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4860 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557290.1	TIGRFAM: Taurine ABC transporter, periplasmic binding protein; KEGG: smd:Smed_4859 taurine ABC transporter, periplasmic binding protein
YP_004557291.1	KEGG: smd:Smed_4858 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004557292.1	PFAM: Protein of unknown function DUF1486; KEGG: smd:Smed_4437 hypothetical protein
YP_004557293.1	KEGG: ebi:EbC_21850 NmrA family protein
YP_004557294.1	PFAM: Helix-turn-helix, HxlR type; KEGG: bid:Bind_0264 HxlR family transcriptional regulator
YP_004557295.1	KEGG: rle:RL1144 hypothetical protein
YP_004557296.1	PFAM: Phospholipase/carboxylesterase; KEGG: smd:Smed_5249 phospholipase/carboxylesterase
YP_004557297.1	PFAM: Protein of unknown function DUF427; KEGG: smd:Smed_4771 hypothetical protein
YP_004557298.1	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: smd:Smed_4770 glutathione-dependent formaldehyde-activating GFA
YP_004557299.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4769 periplasmic binding protein/LacI transcriptional regulator
YP_004557300.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4768 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557301.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4767 monosaccharide-transporting ATPase
YP_004557302.1	KEGG: smd:Smed_4766 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004557303.1	KEGG: smd:Smed_4765 tagatose-6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ; PFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AgaZ
YP_004557304.1	KEGG: smd:Smed_4764 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004557305.1	KEGG: smd:Smed_4763 hypothetical protein
YP_004557306.1	KEGG: smd:Smed_4762 cytochrome c oxidase subunit I type; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004557307.1	PFAM: Sodium/calcium exchanger membrane region; KEGG: smd:Smed_4761 sodium/calcium exchanger membrane region
YP_004557308.1	KEGG: smd:Smed_4760 cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome c, class I
YP_004557309.1	KEGG: smd:Smed_4759 cytochrome c class I protein
YP_004557310.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: smd:Smed_4758 hypothetical protein
YP_004557311.1	PFAM: Protein of unknown function DUF2231, transmembrane; KEGG: smd:Smed_4757 hypothetical protein
YP_004557312.1	KEGG: smd:Smed_4756 putative membrane-anchored oxidoreductase
YP_004557313.1	KEGG: smd:Smed_4755 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004557314.1	PFAM: Protein of unknown function DUF421; KEGG: smd:Smed_4754 hypothetical protein
YP_004557315.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: oca:OCAR_5805 transcriptional regulator, LysR family
YP_004557316.1	PFAM: Isochorismatase-like; KEGG: swi:Swit_4572 isochorismatase hydrolase
YP_004557317.1	PFAM: Protein of unknown function DUF2231, transmembrane; KEGG: rec:RHECIAT_CH0001140 hypothetical conserved membrane protein
YP_004557318.1	KEGG: smd:Smed_4751 putative ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004557319.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: smd:Smed_4750 oxidoreductase domain-containing protein
YP_004557320.1	KEGG: smd:Smed_4749 glucuronate isomerase; PFAM: Uronate isomerase
YP_004557321.1	KEGG: smd:Smed_4748 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria
YP_004557322.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: smd:Smed_4747 tripartite ATP-independent periplasmic transporter DctQ
YP_004557323.1	KEGG: smd:Smed_4746 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004557324.1	KEGG: smd:Smed_4745 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004557325.1	KEGG: smd:Smed_4744 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase
YP_004557326.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; KEGG: smd:Smed_4743 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557327.1	PFAM: Cupin 2, conserved barrel; KEGG: smd:Smed_4742 cupin 2 domain-containing protein
YP_004557328.1	KEGG: smd:Smed_4741 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004557329.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_4740 periplasmic binding protein/LacI transcriptional regulator
YP_004557330.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4739 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557331.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4738 monosaccharide-transporting ATPase
YP_004557332.1	PFAM: ABC transporter permease; KEGG: smd:Smed_4737 monosaccharide-transporting ATPase
YP_004557333.1	KEGG: smd:Smed_4736 phytanoyl-CoA dioxygenase
YP_004557334.1	KEGG: smd:Smed_4735 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004557335.1	KEGG: smd:Smed_4734 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004557336.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: smd:Smed_4733 2Fe-2S iron-sulfur cluster binding domain-containing protein
YP_004557337.1	KEGG: smd:Smed_4732 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004557338.1	PFAM: Uncharacterised protein family UPF0118; KEGG: smd:Smed_4731 hypothetical protein
YP_004557339.1	PFAM: Protein of unknown function DUF1236; KEGG: smd:Smed_4730 hypothetical protein
YP_004557340.1	KEGG: smd:Smed_4729 hypothetical protein
YP_004557341.1	KEGG: smd:Smed_4728 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_004557342.1	PFAM: Protein of unknown function DUF2934; KEGG: rlg:Rleg_5768 hypothetical protein
YP_004557343.1	PFAM: CsbD-like; KEGG: smd:Smed_4727 CsbD family protein
YP_004557344.1	KEGG: smd:Smed_4726 exported peptide protein
YP_004557345.1	PFAM: dTDP-4-dehydrorhamnose reductase; manually curated; KEGG: smd:Smed_4724 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_004557346.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: smd:Smed_4723 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004557347.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: smd:Smed_4722 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_004557348.1	TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: smd:Smed_4721 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_004557349.1	KEGG: smd:Smed_4720 hypothetical protein
YP_004557350.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: smd:Smed_4719 polysaccharide pyruvyl transferase
YP_004557351.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: smd:Smed_4718 polysaccharide pyruvyl transferase
YP_004557352.1	PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: smd:Smed_4717 glycosyl transferase family protein
YP_004557353.1	manually curated; KEGG: smd:Smed_4716 putative membrane-anchored protein
YP_004557354.1	PFAM: Domain of unknown function DUF3495; Glycosyl transferase, group 1; KEGG: smd:Smed_4715 glycosyl transferase group 1
YP_004557355.1	KEGG: smd:Smed_4714 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004557356.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: smd:Smed_4713 type I secretion system ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004557357.1	KEGG: smd:Smed_4712 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004557358.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_4711 putative secreted calcium-binding protein
YP_004557359.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4710 glycosyl transferase family protein
YP_004557360.1	PFAM: Methyltransferase type 11; KEGG: smd:Smed_4709 methyltransferase type 11
YP_004557361.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4708 glycosyl transferase group 1
YP_004557362.1	KEGG: smd:Smed_4707 putative membrane-anchored protein
YP_004557363.1	KEGG: smd:Smed_4706 hypothetical protein
YP_004557364.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4705 glycosyl transferase group 1
YP_004557365.1	KEGG: smd:Smed_4704 hypothetical protein
YP_004557366.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mlo:mll5127 ABC transporter, binding protein
YP_004557367.1	KEGG: smd:Smed_4703 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004557368.1	PFAM: Metallo-dependent phosphatase; KEGG: smd:Smed_4702 bis(5'nucleosyl)-tetraphosphatase, ApaH
YP_004557369.1	KEGG: smd:Smed_4701 hypothetical protein
YP_004557370.1	PFAM: Domain of unknown function DUF1705; Sulfatase; KEGG: rhi:NGR_b14100 hypothetical protein
YP_004557371.1	KEGG: rhi:NGR_b14090 putative two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004557372.1	KEGG: rhi:NGR_b14080 two component sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004557373.1	PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_4699 TetR family transcriptional regulator
YP_004557374.1	PFAM: Secretion protein HlyD; KEGG: smd:Smed_4698 hypothetical protein
YP_004557375.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4697 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557376.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4696 ABC-2 type transporter
YP_004557377.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4695 ABC-2 type transporter
YP_004557378.1	PFAM: Phospholipase/carboxylesterase; KEGG: rhi:NGR_b13990 phospholipase/carboxylesterase family protein
YP_004557379.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rhi:NGR_b13980 hypothetical protein
YP_004557380.1	KEGG: smd:Smed_4690 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004557381.1	KEGG: smd:Smed_4689 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core
YP_004557382.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4688 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557383.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4687 binding-protein-dependent transport systems inner membrane component
YP_004557384.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4686 alkaline phosphatase
YP_004557385.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4685 extracellular solute-binding protein
YP_004557386.1	TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: rhi:NGR_b13730 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II
YP_004557387.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4682 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557388.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4681 glycosyl transferase family protein
YP_004557389.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4680 glycosyl transferase family protein
YP_004557390.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_4679 acyltransferase 3
YP_004557391.1	KEGG: smd:Smed_4678 MerR family transcriptional regulator; PFAM: Cupin 2, conserved barrel; HTH transcriptional regulator, MerR; Helix-turn-helix type 3; SMART: HTH transcriptional regulator, MerR; Helix-turn-helix type 3
YP_004557392.1	TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: smd:Smed_4677 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III
YP_004557393.1	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: smd:Smed_4676 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004557394.1	TIGRFAM: Acetate kinase; KEGG: rhi:NGR_b13640 acetate kinase; PFAM: Acetate/butyrate kinase
YP_004557395.1	KEGG: smd:Smed_4673 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004557396.1	KEGG: rhi:NGR_b13360 acyl-CoA transferase/carnitine dehydratase-like conserved hypothetical protein; PFAM: CoA-transferase family III
YP_004557397.1	KEGG: smd:Smed_4671 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1
YP_004557398.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: smd:Smed_4670 LysR family transcriptional regulator
YP_004557399.1	PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4669 FAD dependent oxidoreductase
YP_004557400.1	PFAM: Trimethylamine methyltransferase; KEGG: smd:Smed_1775 trimethylamine methyltransferase
YP_004557401.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: smd:Smed_4668 phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter-like
YP_004557402.1	TIGRFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; Phosphonate-binding periplasmic protein; KEGG: smd:Smed_4667 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_004557403.1	KEGG: smd:Smed_4666 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557404.1	KEGG: smd:Smed_4665 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557405.1	KEGG: smd:Smed_4664 hypothetical protein; TIGRFAM: Protein of unknown function DUF1045; PFAM: Protein of unknown function DUF1045
YP_004557406.1	KEGG: smd:Smed_4663 phosphonate metabolism protein PhnM; TIGRFAM: Phosphonate metabolism PhnM; PFAM: Amidohydrolase 3
YP_004557407.1	KEGG: smd:Smed_4662 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; TIGRFAM: Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: Guanylate kinase/L-type calcium channel
YP_004557408.1	SMART: HTH transcriptional regulator, ArsR; KEGG: smd:Smed_4661 regulatory protein ArsR
YP_004557409.1	PFAM: Major facilitator superfamily MFS-1; KEGG: smd:Smed_4660 major facilitator transporter
YP_004557410.1	PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: bxe:Bxe_A2660 putative reverse transcriptase-maturase-endonucleas
YP_004557411.1	KEGG: gox:GOX0711 hypothetical protein
YP_004557412.1	TIGRFAM: Imidazolonepropionase; KEGG: smd:Smed_4659 imidazolonepropionase; PFAM: Amidohydrolase 3
YP_004557413.1	TIGRFAM: Histidine ammonia-lyase; KEGG: smd:Smed_4658 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase
YP_004557414.1	KEGG: smd:Smed_4657 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase
YP_004557415.1	TIGRFAM: Urocanase; KEGG: smd:Smed_4656 urocanate hydratase; PFAM: Urocanase
YP_004557416.1	KEGG: smd:Smed_4655 major facilitator transporter
YP_004557417.1	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: smd:Smed_4654 MlrC domain-containing protein
YP_004557418.1	KEGG: smd:Smed_4653 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core
YP_004557419.1	KEGG: smd:Smed_4652 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557420.1	PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: smd:Smed_4651 RpiR family transcriptional regulator
YP_004557421.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_b13190 hypothetical protein
YP_004557422.1	KEGG: rhi:NGR_b13180 hypothetical protein
YP_004557423.1	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: smd:Smed_4648 hypothetical protein
YP_004557424.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_4647 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004557425.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_4646 GCN5-related N-acetyltransferase
YP_004557426.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4645 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557427.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4644 extracellular solute-binding protein
YP_004557428.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4643 binding-protein-dependent transport systems inner membrane component
YP_004557429.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b13080 putative permease component of ABC transporter
YP_004557430.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_4641 oxidoreductase domain-containing protein
YP_004557431.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4640 binding-protein-dependent transport systems inner membrane component
YP_004557432.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4639 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557433.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4638 binding-protein-dependent transport systems inner membrane component
YP_004557434.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: smd:Smed_4637 substrate-binding region of ABC-type glycine betaine transport system
YP_004557435.1	KEGG: smd:Smed_4636 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004557436.1	KEGG: rhi:NGR_c23890 hypothetical protein
YP_004557437.1	PFAM: Amidinotransferase; KEGG: smd:Smed_4635 amidinotransferase
YP_004557438.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: smd:Smed_4634 OsmC family protein
YP_004557439.1	PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU; KEGG: smd:Smed_4633 RbsD or FucU transport
YP_004557440.1	PFAM: Aldehyde dehydrogenase domain; KEGG: smd:Smed_4632 aldehyde dehydrogenase
YP_004557441.1	TIGRFAM: Deoxyribose-phosphate aldolase; KEGG: smd:Smed_4631 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004557442.1	KEGG: smd:Smed_4630 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004557443.1	PFAM: Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin; Alpha-2-macroglobulin, thiol-ester bond-forming; A-macroglobulin complement component; PAN-1 domain; KEGG: rhi:NGR_b12790 putative inner membrane lipoprotein
YP_004557444.1	TIGRFAM: Penicillin-binding protein 1C; KEGG: smd:Smed_4628 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding, C-terminal; Penicillin-binding protein, transpeptidase
YP_004557445.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_4627 hypothetical protein
YP_004557446.1	PFAM: Heat shock protein Hsp20; KEGG: smd:Smed_4626 heat shock protein HSP20
YP_004557447.1	PFAM: Heat shock protein Hsp20; KEGG: rhi:NGR_b12740 probable heat shock protein, HSP20 family
YP_004557448.1	TIGRFAM: Guanine deaminase; KEGG: smd:Smed_4625 guanine deaminase; PFAM: Amidohydrolase 1
YP_004557449.1	PFAM: Protein of unknown function DUF989; KEGG: smd:Smed_4624 hypothetical protein
YP_004557450.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4623 LysR family transcriptional regulator
YP_004557451.1	KEGG: rle:RL3511 putative dehydrogenase/oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004557452.1	PFAM: Helix-turn-helix, HxlR type; KEGG: ara:Arad_9310 transcriptional regulator protein
YP_004557453.1	KEGG: smd:Smed_4622 xanthine dehydrogenase accessory protein XdhC; TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: XdhC- CoxI
YP_004557454.1	TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: smd:Smed_4621 xanthine dehydrogenase molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004557455.1	TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: smd:Smed_4620 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; Ferredoxin; CO dehydrogenase flavoprotein, C-terminal; [2Fe-2S]-binding
YP_004557456.1	TIGRFAM: Hydroxyisourate hydrolase; KEGG: smd:Smed_4619 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase
YP_004557457.1	TIGRFAM: Putative urate catabolism protein; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: smd:Smed_4618 chitin deacetylase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Polysaccharide deacetylase
YP_004557458.1	PFAM: Allantoicase domain; TIGRFAM: Allantoicase; HAMAP: Allantoicase; KEGG: bgl:bglu_1g13140 allantoicase
YP_004557459.1	KEGG: rru:Rru_A2416 hypothetical protein
YP_004557460.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: smd:Smed_4615 xanthine/uracil/vitamin C permease
YP_004557461.1	PFAM: Phosphoribosyltransferase; KEGG: smd:Smed_4613 phosphoribosyltransferase
YP_004557462.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: smd:Smed_4612 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004557463.1	HAMAP: Adenine deaminase; KEGG: smd:Smed_4610 adenine deaminase; PFAM: Amidohydrolase 1
YP_004557464.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: smd:Smed_4609 inosine/uridine-preferring nucleoside hydrolase
YP_004557465.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4608 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557466.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4607 binding-protein-dependent transport systems inner membrane component
YP_004557467.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4606 binding-protein-dependent transport systems inner membrane component
YP_004557468.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4605 extracellular solute-binding protein
YP_004557469.1	KEGG: smd:Smed_4604 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004557470.1	TIGRFAM: Methyltransferase FkbM; KEGG: smd:Smed_4602 FkbM family methyltransferase
YP_004557471.1	KEGG: smd:Smed_4601 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain
YP_004557472.1	PFAM: ABC transporter, transmembrane domain; KEGG: smd:Smed_4600 ABC transporter related
YP_004557473.1	KEGG: smd:Smed_4599 hypothetical protein
YP_004557474.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: smd:Smed_4598 glycosyltransferase family 28 protein
YP_004557475.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4597 glycosyl transferase group 1
YP_004557476.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: smd:Smed_4596 putative membrane-anchored protein
YP_004557477.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4595 binding-protein-dependent transport systems inner membrane component
YP_004557478.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4594 binding-protein-dependent transport systems inner membrane component
YP_004557479.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_4593 extracellular solute-binding protein
YP_004557480.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_4592 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557481.1	KEGG: smd:Smed_4591 exported protein precursor
YP_004557482.1	KEGG: smd:Smed_4590 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004557483.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: smd:Smed_4589 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004557484.1	PFAM: Protein of unknown function DUF3095; KEGG: smd:Smed_4588 hypothetical protein
YP_004557485.1	KEGG: smd:Smed_4587 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004557486.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4586 polysaccharide deacetylase
YP_004557487.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4585 glycosyl transferase group 1
YP_004557488.1	PFAM: Mechanosensitive ion channel MscS; KEGG: smd:Smed_4584 MscS mechanosensitive ion channel
YP_004557489.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4583 glycosyl transferase group 1
YP_004557490.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4582 sulfotransferase
YP_004557491.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: smd:Smed_4581 DegT/DnrJ/EryC1/StrS aminotransferase
YP_004557492.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: smd:Smed_4580 LmbE family protein
YP_004557493.1	PFAM: Bacterial sugar transferase; KEGG: smd:Smed_4579 sugar transferase
YP_004557494.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_4578 polysaccharide export protein
YP_004557495.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4577 polysaccharide biosynthesis protein
YP_004557496.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4576 sulfotransferase
YP_004557497.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4575 glycosyl transferase group 1
YP_004557498.1	KEGG: smd:Smed_4574 hypothetical protein
YP_004557499.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_4573 lipopolysaccharide biosynthesis protein
YP_004557500.1	KEGG: smd:Smed_4572 hypothetical protein
YP_004557501.1	PFAM: Sulfotransferase domain; KEGG: smd:Smed_4571 putative enzyme
YP_004557502.1	KEGG: smd:Smed_4570 putative ATPGTP-binding protein
YP_004557503.1	KEGG: smd:Smed_4569 formyl transferase domain-containing protein; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal
YP_004557504.1	PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: smd:Smed_4568 polysaccharide biosynthesis protein CapD
YP_004557505.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4567 glycosyl transferase group 1
YP_004557506.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4566 glycosyl transferase group 1
YP_004557507.1	KEGG: smd:Smed_4565 hemolysin-type calcium-binding region
YP_004557508.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_4564 NAD-dependent epimerase/dehydratase
YP_004557509.1	PFAM: ATP-grasp fold, DUF201-type; KEGG: smd:Smed_4563 carbamoyl phosphate synthase-like protein
YP_004557510.1	PFAM: PHP, C-terminal; KEGG: smd:Smed_4562 phosphotransferase domain-containing protein
YP_004557511.1	TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; KEGG: smd:Smed_4561 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase
YP_004557512.1	PFAM: Adenylylsulphate kinase, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; Adenylylsulphate kinase, C-terminal; HAMAP: Adenylylsulphate kinase, C-terminal; Sulphate adenylyltransferase, large subunit; KEGG: smd:Smed_6191 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
YP_004557513.1	PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: smd:Smed_6192 sulfate adenylyltransferase subunit 2
YP_004557514.1	PFAM: ROK; KEGG: smd:Smed_4558 ROK family protein
YP_004557515.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_4557 extracellular solute-binding protein
YP_004557516.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4556 binding-protein-dependent transport systems inner membrane component
YP_004557517.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4555 binding-protein-dependent transport systems inner membrane component
YP_004557518.1	PFAM: Sugar isomerase (SIS); KEGG: smd:Smed_4554 sugar isomerase (SIS)
YP_004557519.1	PFAM: Carbohydrate/purine kinase; KEGG: smd:Smed_4553 ribokinase-like domain-containing protein
YP_004557520.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4552 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557521.1	KEGG: smd:Smed_4551 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004557522.1	PFAM: Endoribonuclease L-PSP; KEGG: rhi:NGR_b11780 translation initiation inhibitor
YP_004557523.1	PFAM: ABC transporter-like; KEGG: rhi:NGR_b11770 putative ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core
YP_004557524.1	KEGG: rhi:NGR_b11760 putative permease component of ABC transporter; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557525.1	KEGG: rhi:NGR_b11750 putative permease component of ABC transporter; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557526.1	KEGG: smd:Smed_4546 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004557527.1	PFAM: Alanine racemase, N-terminal; KEGG: smd:Smed_4545 alanine racemase domain-containing protein
YP_004557528.1	KEGG: smd:Smed_4544 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004557529.1	KEGG: smd:Smed_4543 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557530.1	KEGG: smd:Smed_4542 sulfate ABC transporter, inner membrane subunit CysW; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557531.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: rhi:NGR_b11690 sulfate ABC transporter, ATP-binding protein; PFAM: ABC transporter-like
YP_004557532.1	KEGG: smd:Smed_4540 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004557533.1	KEGG: smd:Smed_4539 RES domain-containing protein; PFAM: RES; SMART: RES
YP_004557534.1	KEGG: smd:Smed_4538 hypothetical protein
YP_004557535.1	PFAM: Crotonase, core; KEGG: smd:Smed_4537 enoyl-CoA hydratase
YP_004557536.1	KEGG: smd:Smed_4536 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase
YP_004557537.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: smd:Smed_4535 carbamoyl-phosphate synthase L chain ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_004557538.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_4534 endoribonuclease L-PSP
YP_004557539.1	KEGG: smd:Smed_4533 propionyl-CoA carboxylase; PFAM: Carboxyl transferase
YP_004557540.1	KEGG: smd:Smed_4532 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004557541.1	TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; KEGG: smd:Smed_4531 carbohydrate kinase; PFAM: Shikimate kinase
YP_004557542.1	KEGG: smd:Smed_4530 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004557543.1	PFAM: TfuA-like, core; KEGG: smd:Smed_4529 TfuA domain-containing protein
YP_004557544.1	KEGG: smd:Smed_4528 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004557545.1	KEGG: smd:Smed_4527 putative nitrate transport protein
YP_004557546.1	KEGG: smd:Smed_4969 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004557547.1	KEGG: smd:Smed_4970 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004557548.1	KEGG: smd:Smed_4971 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557549.1	PFAM: MaoC-like dehydratase; KEGG: smd:Smed_4972 dehydratase
YP_004557550.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_4973 oxidoreductase domain-containing protein
YP_004557551.1	PFAM: Rhamnose mutarotase; KEGG: smd:Smed_4974 hypothetical protein
YP_004557552.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: smd:Smed_4975 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004557553.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: smd:Smed_4976 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557554.1	KEGG: smd:Smed_4977 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557555.1	KEGG: smd:Smed_4980 regulatory protein IclR; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004557556.1	PFAM: Amidohydrolase 2; KEGG: smd:Smed_4981 amidohydrolase 2
YP_004557557.1	PFAM: Polysaccharide deacetylase; KEGG: smd:Smed_4982 polysaccharide deacetylase
YP_004557558.1	PFAM: MmgE/PrpD; KEGG: smd:Smed_4983 MmgE/PrpD family protein
YP_004557559.1	KEGG: smd:Smed_4984 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004557560.1	PFAM: ABC transporter-like; KEGG: smd:Smed_4985 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557561.1	KEGG: smd:Smed_4986 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557562.1	PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: smd:Smed_4987 argininosuccinate lyase
YP_004557563.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_4988 LysR family transcriptional regulator
YP_004557564.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: smd:Smed_4989 GCN5-related N-acetyltransferase
YP_004557565.1	SMART: Glycoside hydrolase, family 25 subgroup; manually curated; KEGG: smd:Smed_4990 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 25
YP_004557566.1	KEGG: smd:Smed_4991 hypothetical protein
YP_004557567.1	KEGG: smd:Smed_4992 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III
YP_004557568.1	PFAM: TraC-like; KEGG: rec:RHECIAT_PC0000883 conjugal transfer protein C
YP_004557569.1	PFAM: Conjugal transfer, TraD, alpha-type; KEGG: rhi:NGR_b10530 TraD conjugal transfer protein
YP_004557570.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6340 transposase IS66
YP_004557571.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004557572.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004557573.1	KEGG: smd:Smed_4850 acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding
YP_004557574.1	KEGG: smd:Smed_5256 hypothetical protein
YP_004557575.1	KEGG: rle:RL0854 hypothetical protein
YP_004557576.1	KEGG: smd:Smed_5311 hypothetical protein
YP_004557577.1	KEGG: smd:Smed_3631 hypothetical protein
YP_004557578.1	KEGG: rhi:NGR_b16790 putative transposase number 4 for insertion sequence NGRIS-4i; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004557579.1	KEGG: rhi:NGR_a02230 putative transposase number 3 of degenerate insertion sequence
YP_004557580.1	KEGG: rhi:NGR_a02220 putative transposase number 2 of degenerate insertion sequence
YP_004557581.1	manually curated; KEGG: rhi:NGR_a02210 putative transposase number 1 of degenerate insertion sequence
YP_004557582.1	KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; SMART: ATPase, AAA+ type, core
YP_004557583.1	KEGG: smd:Smed_1685 hypothetical protein
YP_004557584.1	KEGG: rhi:NGR_c11510 succinoglycan biosynthesis protein ExoI; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_004557585.1	KEGG: smd:Smed_4837 hypothetical protein
YP_004557586.1	KEGG: rhi:NGR_b10060 hypothetical protein
YP_004557587.1	KEGG: mes:Meso_1150 ATP dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_004557588.1	TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: smd:Smed_5042 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20
YP_004557589.1	KEGG: smd:Smed_5412 hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA
YP_004557590.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: smd:Smed_5040 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557591.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5039 binding-protein-dependent transport systems inner membrane component
YP_004557592.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5038 binding-protein-dependent transport systems inner membrane component
YP_004557593.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5037 extracellular solute-binding protein
YP_004557594.1	KEGG: smd:Smed_5035 hypothetical protein
YP_004557595.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: smd:Smed_5034 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3
YP_004557596.1	KEGG: smd:Smed_4440 hypothetical protein
YP_004557597.1	KEGG: rec:RHECIAT_CH0001079 hypothetical protein
YP_004557598.1	KEGG: smd:Smed_4438 hypothetical protein
YP_004557599.1	KEGG: smd:Smed_1889 hypothetical protein
YP_004557600.1	KEGG: smd:Smed_1897 phage terminase small subunit
YP_004557601.1	KEGG: smd:Smed_1899 hypothetical protein
YP_004557602.1	KEGG: rhi:NGR_c11540 hypothetical protein
YP_004557603.1	KEGG: oan:Oant_0494 hypothetical protein
YP_004557605.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rsk:RSKD131_3673 antibiotic biosynthesis monooxygenase
YP_004557606.1	KEGG: rsk:RSKD131_3672 autoinducer-2 (AI-2) kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004557607.1	PFAM: Sugar-binding domain, putative; KEGG: rsh:Rsph17029_3150 DeoR family transcriptional regulator
YP_004557608.1	PFAM: ABC transporter-like; KEGG: rsp:RSP_3503 sugar ABC transporter ATPase; SMART: ATPase, AAA+ type, core
YP_004557609.1	PFAM: ABC transporter permease; KEGG: rsp:RSP_3502 ABC sugar transporter, inner membrane subunit
YP_004557610.1	PFAM: ABC transporter permease; KEGG: rsk:RSKD131_3668 inner-membrane translocator
YP_004557611.1	KEGG: rsh:Rsph17029_3146 ABC sugar transporter, periplasmic binding protein
YP_004557612.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: rsk:RSKD131_3666 short chain dehydrogenase
YP_004557613.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_4993 capsule polysaccharide biosynthesis protein
YP_004557614.1	KEGG: cth:Cthe_2225 methylmalonyl-CoA epimerase
YP_004557615.1	PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: pla:Plav_3071 membrane bound O-acyl transferase MBOAT family protein
YP_004557616.1	KEGG: bpb:bpr_I0539 hypothetical protein
YP_004557617.1	KEGG: scl:sce8222 hypothetical protein
YP_004557618.1	TIGRFAM: FkbH domain; HAD-superfamily phosphatase, subfamily IIIC; KEGG: xau:Xaut_0884 FkbH like protein
YP_004557619.1	KEGG: rhi:NGR_c05540 hypothetical protein
YP_004557620.1	KEGG: smd:Smed_4833 hypothetical protein
YP_004557621.1	SMART: Cadherin; KEGG: bja:bll3714 hypothetical protein
YP_004557622.1	PFAM: Sulfotransferase; KEGG: amr:AM1_0503 hypothetical protein
YP_004557623.1	TIGRFAM: Uncharacterised protein family UPF0149; KEGG: smd:Smed_6363 YecA family protein
YP_004557624.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6364 transposase IS66
YP_004557625.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: smd:Smed_6365 IS66 Orf2 family protein
YP_004557626.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_5516 transposase IS3/IS911 family protein
YP_004557627.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: smd:Smed_4993 capsule polysaccharide biosynthesis protein
YP_004557628.1	PFAM: Haemolysin-type calcium-binding repeat; KEGG: smd:Smed_5000 hemolysin-type calcium-binding region
YP_004557629.1	KEGG: smd:Smed_1865 hypothetical protein
YP_004557630.1	KEGG: mes:Meso_0197 hypothetical protein
YP_004557631.1	KEGG: rme:Rmet_5726 chloramphenicol acetyltransferase
YP_004557632.1	KEGG: ade:Adeh_2835 hypothetical protein
YP_004557633.1	KEGG: fbl:Fbal_2923 protein of unknown function DUF81
YP_004557634.1	PFAM: Methyltransferase type 11; KEGG: dma:DMR_40320 putative glycosyltransferase
YP_004557635.1	KEGG: oan:Oant_0205 hypothetical protein
YP_004557636.1	KEGG: mex:Mext_0093 hypothetical protein
YP_004557637.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_4994 ABC-2 type transporter
YP_004557638.1	KEGG: smd:Smed_4995 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557639.1	KEGG: smd:Smed_4996 capsule polysaccharide export protein-like protein
YP_004557640.1	KEGG: ara:Arad_2811 lipopolysaccharide biosynthesis protein (SAM-dependent methyltransferase protein); TIGRFAM: Methyltransferase FkbM; PFAM: Protein of unknown function Met10
YP_004557641.1	PFAM: Glycosyl transferase, family 2; KEGG: amr:AM1_1023 glycosyl transferase, group 2 family protein
YP_004557642.1	PFAM: Capsule polysaccharide biosynthesis; KEGG: rhi:NGR_b09380 putative capsule polysaccharide biosynthesis protein
YP_004557643.1	PFAM: ABC-2 type transporter; KEGG: smd:Smed_5003 ABC-2 type transporter
YP_004557644.1	PFAM: Transposase, IS4-like; KEGG: rhi:NGR_b15530 putative transposase Y4zB-like protein
YP_004557645.1	PFAM: Ketopantoate hydroxymethyltransferase; KEGG: smd:Smed_5004 ketopantoate hydroxymethyltransferase
YP_004557646.1	KEGG: smd:Smed_5005 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_004557647.1	KEGG: smd:Smed_5006 Rieske (2Fe-2S) domain-containing protein; TIGRFAM: MocE Rieske [2Fe-2S]; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004557648.1	PFAM: Fatty acid desaturase, type 1; KEGG: smd:Smed_5007 fatty acid desaturase
YP_004557649.1	PFAM: HTH transcriptional regulator, LacI; KEGG: smd:Smed_5008 regulatory protein LacI
YP_004557650.1	PFAM: AsmA; KEGG: smd:Smed_5009 AsmA family protein
YP_004557651.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004557652.1	KEGG: rca:Rcas_1010 CRISPR-associated helicase Cas3
YP_004557653.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004557654.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rle:pRL100125 putative transposase family protein
YP_004557655.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6340 transposase IS66
YP_004557656.1	KEGG: smd:Smed_4817 hypothetical protein
YP_004557657.1	KEGG: smd:Smed_4826 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004557658.1	KEGG: rhi:NGR_b18490 probable two-component response regulator protein; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004557659.1	KEGG: smd:Smed_4816 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004557660.1	PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: smd:Smed_4815 polysaccharide export protein
YP_004557661.1	TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: smd:Smed_4814 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_004557662.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: smd:Smed_4813 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_004557663.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: smd:Smed_4812 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004557664.1	TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: smd:Smed_4811 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase
YP_004557665.1	PFAM: Polysaccharide biosynthesis protein; KEGG: smd:Smed_4810 polysaccharide biosynthesis protein
YP_004557666.1	KEGG: smd:Smed_4809 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004557667.1	KEGG: smd:Smed_4808 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004557668.1	KEGG: smd:Smed_4807 hypothetical protein
YP_004557669.1	KEGG: smd:Smed_4806 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004557670.1	PFAM: Oxidoreductase, N-terminal; KEGG: smd:Smed_4805 oxidoreductase domain-containing protein
YP_004557671.1	KEGG: smd:Smed_4804 hexapaptide repeat-containing transferase
YP_004557673.1	KEGG: dfe:Dfer_1756 fibronectin type III domain protein
YP_004557674.1	KEGG: smd:Smed_4800 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_004557675.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: smd:Smed_4786 lipopolysaccharide biosynthesis protein
YP_004557676.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: smd:Smed_4787 chromosome partitioning ATPase
YP_004557677.1	KEGG: nha:Nham_3027 hypothetical protein
YP_004557678.1	KEGG: avi:Avi_3264 GTP cyclohydrolase I
YP_004557679.1	KEGG: nha:Nham_3027 hypothetical protein
YP_004557680.1	PFAM: O-antigen ligase-related; KEGG: smd:Smed_4799 hypothetical protein
YP_004557681.1	KEGG: cyc:PCC7424_5778 hypothetical protein
YP_004557682.1	TIGRFAM: UDP-galactopyranose mutase; KEGG: met:M446_0088 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal
YP_004557683.1	PFAM: Glycosyl transferase, family 2; KEGG: dat:HRM2_29840 putative glycosyl transferase (group 2 family protein)
YP_004557684.1	PFAM: Glycosyl transferase, group 1; KEGG: smd:Smed_4803 glycosyl transferase group 1
YP_004557685.1	KEGG: sit:TM1040_1902 hypothetical protein
YP_004557686.1	KEGG: mjl:Mjls_4476 hypothetical protein
YP_004557687.1	PFAM: Polysaccharide deacetylase; KEGG: sro:Sros_0658 xylanase/chitin deacetylase-like protein
YP_004557688.1	PFAM: Glycosyl transferase, family 2; KEGG: smd:Smed_4788 glycosyl transferase family protein
YP_004557689.1	PFAM: Phosphopantetheine-binding; KEGG: nwa:Nwat_1758 hypothetical protein
YP_004557690.1	TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: cai:Caci_7006 pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004557691.1	TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: dar:Daro_2434 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004557692.1	KEGG: mgm:Mmc1_3313 hypothetical protein
YP_004557693.1	PFAM: Glycosyl transferase, group 1; KEGG: bja:blr6297 glycosyl transferase
YP_004557694.1	PFAM: Glycosyl transferase, family 2; KEGG: nha:Nham_3045 glycosyl transferase family protein
YP_004557695.1	KEGG: rec:RHECIAT_PC0000258 hypothetical protein
YP_004557697.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: azc:AZC_4668 type I secretion system ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004557698.1	KEGG: azc:AZC_4667 type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD
YP_004557699.1	KEGG: smd:Smed_5010 hypothetical protein
YP_004557700.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: smd:Smed_5011 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557701.1	KEGG: smd:Smed_5012 hypothetical protein
YP_004557702.1	KEGG: smd:Smed_5013 hypothetical protein
YP_004557703.1	PFAM: Acyltransferase 3; KEGG: smd:Smed_5014 acyltransferase 3
YP_004557704.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: smd:Smed_5015 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core
YP_004557705.1	KEGG: smd:Smed_5016 putative membrane-anchored protein
YP_004557706.1	KEGG: smd:Smed_5017 glycosyl transferase family protein
YP_004557707.1	KEGG: smd:Smed_5018 hypothetical protein
YP_004557708.1	KEGG: smd:Smed_5019 putative glycosyltransferase protein
YP_004557709.1	KEGG: smd:Smed_5020 putative membrane-anchored protein
YP_004557710.1	KEGG: smd:Smed_5021 putative 3-deoxy-manno-octulosonate cytidylyltransferase (CMP KDO transferase) protein
YP_004557711.1	PFAM: Domain of unknown function DUF23; KEGG: smd:Smed_5022 hypothetical protein
YP_004557712.1	PFAM: Protein of unknown function DUF1022; KEGG: smd:Smed_5023 hypothetical protein
YP_004557713.1	KEGG: smd:Smed_5024 hypothetical protein
YP_004557714.1	PFAM: Heavy metal transport/detoxification protein; KEGG: smd:Smed_5025 heavy metal transport/detoxification protein
YP_004557715.1	manually curated; KEGG: rle:pRL110333 hypothetical protein
YP_004557716.1	KEGG: rhi:NGR_c11410 hypothetical protein
YP_004557717.1	PFAM: Protein of unknown function DUF454; KEGG: smd:Smed_3577 hypothetical protein
YP_004557718.1	KEGG: azl:AZL_008050 hypothetical protein
YP_004557719.1	PFAM: Protein of unknown function DUF1643; KEGG: smd:Smed_1928 hypothetical protein
YP_004557720.1	KEGG: nha:Nham_1727 phage integrase
YP_004557721.1	PFAM: Phospholipase/carboxylesterase; KEGG: smd:Smed_5249 phospholipase/carboxylesterase
YP_004557722.1	KEGG: smd:Smed_1909 hypothetical protein
YP_004557723.1	PFAM: Protein of unknown function DUF982; KEGG: rlt:Rleg2_2444 protein of unknown function DUF982
YP_004557724.1	PFAM: Protein of unknown function DUF982; KEGG: rhi:NGR_b17290 hypothetical protein
YP_004557725.1	KEGG: smd:Smed_4412 hypothetical protein
YP_004557726.1	manually curated; KEGG: smd:Smed_6023 transposase
YP_004557727.1	KEGG: smd:Smed_4852 hypothetical protein
YP_004557728.1	KEGG: smd:Smed_1904 hypothetical protein
YP_004557729.1	PFAM: Protein of unknown function DUF982; KEGG: smd:Smed_1912 hypothetical protein
YP_004557730.1	manually curated; KEGG: smd:Smed_5213 hypothetical protein
YP_004557731.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR2; KEGG: rhi:NGR_c28120 adenylate cyclase 3; SMART: Tetratricopeptide repeat; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004557732.1	KEGG: mxa:MXAN_2326 aldehyde dehydrogenase family protein
YP_004557733.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: smd:Smed_3578 extracellular solute-binding protein
YP_004557734.1	PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3579 periplasmic binding protein/LacI transcriptional regulator
YP_004557735.1	PFAM: Uncharacterised conserved protein UCP014753; KEGG: smd:Smed_3580 hypothetical protein
YP_004557736.1	KEGG: smd:Smed_3581 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_004557737.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: smd:Smed_3582 xylose isomerase domain-containing protein
YP_004557738.1	KEGG: rhi:NGR_c13960 putative aminoglycoside N(6')-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004557739.1	PFAM: Protein of unknown function DUF1109; KEGG: mlo:mll3492 hypothetical protein
YP_004557740.1	KEGG: mlo:mll3493 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004557741.1	PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: bra:BRADO7096 hypothetical protein
YP_004557742.1	KEGG: rlg:Rleg_5938 hypothetical protein; HAMAP: Uncharacterised protein family UPF0276; PFAM: Uncharacterised protein family UPF0276
YP_004557743.1	PFAM: Protein of unknown function DUF2063; KEGG: bra:BRADO7098 hypothetical protein
YP_004557744.1	PFAM: Uncharacterised protein family YphA; KEGG: rpe:RPE_1950 DoxX family protein
YP_004557745.1	KEGG: hch:HCH_03235 hypothetical protein
YP_004557747.1	PFAM: PRC-barrel; KEGG: smd:Smed_2876 PRC-barrel domain-containing protein
YP_004557748.1	PFAM: NADPH-dependent FMN reductase; KEGG: rhi:NGR_b01800 hypothetical protein
YP_004557749.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_004557750.1	SMART: Signal transduction response regulator, receiver domain; KEGG: smd:Smed_5777 response regulator receiver protein
YP_004557751.1	SMART: MCP methyltransferase, CheR-type; Signal transduction histidine kinase, HWE region; PAC motif; PAS; TIGRFAM: PAS; KEGG: smd:Smed_5776 putative PAS/PAC sensor protein; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PAS fold-4; Signal transduction histidine kinase, HWE region
YP_004557752.1	KEGG: smd:Smed_4435 hypothetical protein
YP_004557753.1	KEGG: smd:Smed_3597 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557754.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: smd:Smed_3598 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004557755.1	KEGG: smd:Smed_3599 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004557756.1	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: smd:Smed_3600 monosaccharide-transporting ATPase
YP_004557757.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3601 L-arabinose transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004557758.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3602 L-arabinose transporter permease protein
YP_004557759.1	PFAM: Aminoglycoside phosphotransferase; KEGG: gym:GYMC10_2392 aminoglycoside phosphotransferase
YP_004557760.1	KEGG: smd:Smed_3603 putative ABC transporter periplasmic sugar-binding protein
YP_004557761.1	PFAM: ABC transporter-like; KEGG: smd:Smed_3604 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557762.1	PFAM: ABC transporter permease; KEGG: smd:Smed_3605 monosaccharide-transporting ATPase
YP_004557763.1	PFAM: Sugar-binding domain, putative; RNA polymerase sigma factor 70, region 4 type 2; KEGG: smd:Smed_3606 DeoR family transcriptional regulator
YP_004557764.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_3607 aldo/keto reductase
YP_004557765.1	KEGG: smd:Smed_3608 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004557766.1	PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: smd:Smed_3609 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004557767.1	KEGG: smd:Smed_3611 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004557768.1	KEGG: eba:ebA3511 hypothetical protein
YP_004557769.1	PFAM: Protein of unknown function DUF1127; KEGG: smd:Smed_5176 hypothetical protein
YP_004557770.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xau:Xaut_1015 LysR family transcriptional regulator
YP_004557771.1	KEGG: gdj:Gdia_0886 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557772.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bgf:BC1003_3820 short-chain dehydrogenase/reductase SDR
YP_004557774.1	PFAM: PilT protein, N-terminal; KEGG: rle:pRL100005 hypothetical protein
YP_004557775.1	PFAM: Rv0623-like transcription factor; KEGG: rlg:Rleg_6312 Rv0623 family protein transcription factor
YP_004557776.1	KEGG: rle:pRL80008 putative phage integrase
YP_004557777.1	KEGG: rlg:Rleg_0729 hypothetical protein
YP_004557778.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pam:PANA_3123 LysR
YP_004557779.1	PFAM: Reverse transcriptase; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase
YP_004557780.1	KEGG: azc:AZC_1261 glycine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004557781.1	KEGG: rec:RHECIAT_PB0000063 putative D-alanine-D-alanine ligase protein; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal
YP_004557782.1	KEGG: pph:Ppha_1421 putative type II DNA modification enzyme
YP_004557783.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; KEGG: mlo:mll6062 hypothetical protein
YP_004557784.1	TIGRFAM: Diaminopimelate decarboxylase; KEGG: azl:AZL_d01130 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004557785.1	KEGG: rec:RHECIAT_PB0000065 putative diaminopimelate epimerase protein; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase
YP_004557786.1	PFAM: Ornithine cyclodeaminase/mu-crystallin; KEGG: jan:Jann_1530 ornithine cyclodeaminase
YP_004557787.1	KEGG: rhi:NGR_b16790 putative transposase number 4 for insertion sequence NGRIS-4i; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004557788.1	manually curated; KEGG: rhi:NGR_a02220 putative transposase number 2 of degenerate insertion sequence
YP_004557789.1	PFAM: IstB-like ATP-binding protein; IstB-like ATP binding N-terminal; KEGG: smd:Smed_6464 IstB ATP binding domain-containing protein
YP_004557790.1	PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; KEGG: rlt:Rleg2_1775 peptidase M16 domain protein
YP_004557791.1	KEGG: swi:Swit_5093 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal
YP_004557792.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ddr:Deide_3p00700 putative succinylglutamate desuccinylase / aspartoacylase family
YP_004557793.1	TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: psp:PSPPH_2278 ABC transporter binding protein-like protein AabH; SMART: Extracellular solute-binding protein, family 3
YP_004557794.1	manually curated; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; KEGG: bbr:BB2161 putative inner membrane component of binding-protein-dependent transport system; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557795.1	KEGG: psb:Psyr_2964 amino acid ABC transporter permease; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004557796.1	PFAM: ABC transporter-like; KEGG: rle:RL2201 general L-amino acid transport ATP-binding subunit; SMART: ATPase, AAA+ type, core
YP_004557797.1	KEGG: xau:Xaut_4276 glycine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004557798.1	KEGG: atu:Atu5343 ABC transporter, substrate binding protein (oligopeptide); manually curated; PFAM: Bacterial extracellular solute-binding protein, family 5
YP_004557799.1	PFAM: Peptidase C69, dipeptidase A; KEGG: sil:SPO2829 dipeptidase domain-containing protein
YP_004557800.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_6329 binding-protein-dependent transport systems inner membrane component
YP_004557801.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_6328 binding-protein-dependent transport systems inner membrane component
YP_004557802.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: jan:Jann_3819 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004557803.1	KEGG: mlo:mll6664 2-amino-3-ketobutyrate CoA ligase; PFAM: Aminotransferase, class I/classII
YP_004557804.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: rhi:NGR_b09790 hypothetical protein
YP_004557805.1	KEGG: ecu:ECU07_1530 similarity to ribosomal protein L5
YP_004557806.1	KEGG: kvu:EIO_2529 HTH-type transcriptional regulator YdhC; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004557807.1	manually curated; KEGG: cti:pRALTA_0503 transposase fragment, IS256 family
YP_004557808.1	KEGG: rva:Rvan_3151 IS66 Orf2 family protein; manually curated; PFAM: Transposase (putative), IS66 Orf2-like
YP_004557809.1	PFAM: Transposase, IS66; KEGG: rhi:NGR_b09780 putative insertion sequence transposase protein, IS66 family
YP_004557810.1	KEGG: ppp:PHYPADRAFT_233407 hypothetical protein
YP_004557811.1	PFAM: Peptidase M14, carboxypeptidase A; KEGG: atu:Atu4522 hypothetical protein
YP_004557812.1	PFAM: Domain of unknown function DUF1989; KEGG: oan:Oant_2795 hypothetical protein
YP_004557813.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: rhi:NGR_b19600 acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain; SMART: Biotin carboxylase, C-terminal
YP_004557814.1	TIGRFAM: Allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: rhi:NGR_b19610 hypothetical carboxylase/hydrolase-like protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1
YP_004557815.1	PFAM: Uncharacterised protein family UPF0271, LamB/YcsF; KEGG: rhi:NGR_b19620 putative lactam utilization protein
YP_004557816.1	KEGG: bte:BTH_II1454 outer membrane porin OpcP
YP_004557817.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ddr:Deide_3p00700 putative succinylglutamate desuccinylase / aspartoacylase family
YP_004557818.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mlo:mll6256 ABC transporter binding protein component
YP_004557819.1	PFAM: Transposase IS3/IS911family; KEGG: rlg:Rleg_0726 transposase IS3/IS911 family protein
YP_004557820.1	KEGG: tgo:TGME49_077060 glutamic acid-rich protein, putative
YP_004557821.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: rhi:NGR_a01870 DNA integration/recombination/inversion protein
YP_004557822.1	PFAM: Transposase, IS801/IS1294; KEGG: rhi:NGR_a01880 putative transposase of undefined mobile element
YP_004557823.1	KEGG: rlt:Rleg2_0122 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_004557824.1	PFAM: Endoribonuclease L-PSP; KEGG: rec:RHECIAT_PC0000813 hypothetical protein
YP_004557825.1	PFAM: Peptidase C26; KEGG: mxa:MXAN_5086 class I glutamine amidotransferase family protein
YP_004557826.1	KEGG: kva:Kvar_2599 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004557827.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: vap:Vapar_4883 transcriptional regulator, LysR family
YP_004557828.1	PFAM: ABC transporter-like; KEGG: mpi:Mpet_2283 ABC transporter-like protein; SMART: ATPase, AAA+ type, core
YP_004557829.1	PFAM: Transposase, IS4-like; KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004557830.1	PFAM: D-alanine--D-alanine ligase, C-terminal; KEGG: bph:Bphy_7633 D-alanine--D-alanine ligase
YP_004557831.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557832.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557833.1	PFAM: Transposase IS3/IS911family; KEGG: smd:Smed_6338 transposase IS3/IS911 family protein
YP_004557834.1	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: nha:Nham_3807 IS66 Orf2 like
YP_004557835.1	PFAM: Transposase, IS66; KEGG: smd:Smed_6340 transposase IS66
YP_004557836.1	TIGRFAM: Glutamine synthetase type I; KEGG: mch:Mchl_2654 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004557838.1	KEGG: rhi:NGR_c33350 L-ectoine synthase; PFAM: Ectoine synthase
YP_004557839.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; KEGG: mlo:mll6062 hypothetical protein
YP_004557840.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: cps:CPS_4918 Asp/Glu/hydantoin racemase
YP_004557842.1	KEGG: rhi:NGR_c33350 L-ectoine synthase; PFAM: Ectoine synthase
YP_004557843.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; KEGG: mlo:mll6062 hypothetical protein
YP_004557844.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557845.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557846.1	KEGG: rpe:RPE_4533 nitrogenase reductase
YP_004557847.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: hoh:Hoch_4359 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_004557848.1	PFAM: Aspartate/glutamate/uridylate kinase; KEGG: cai:Caci_6327 aspartate kinase
YP_004557849.1	KEGG: smd:Smed_1625 hypothetical protein
YP_004557850.1	PFAM: ATP-grasp fold, DUF201-type; KEGG: mlo:mll6062 hypothetical protein
YP_004557851.1	KEGG: smd:Smed_2711 glutamate synthase (ferredoxin); PFAM: Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, central-C; Glutamate synthase, alpha subunit, C-terminal
YP_004557852.1	KEGG: met:M446_6588 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004557853.1	KEGG: avi:Avi_9903 succinoglycan biosynthesis protein; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)
YP_004557854.1	PFAM: Protein of unknown function DUF736; KEGG: avi:Avi_9904 hypothetical protein
YP_004557855.1	KEGG: pop:POPTR_795226 hypothetical protein
YP_004557857.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004557858.1	PFAM: Integrase, catalytic core; KEGG: bja:bll5000 putative transposase
YP_004557859.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: rhi:NGR_b09790 hypothetical protein
YP_004557860.1	KEGG: mlo:mll6664 2-amino-3-ketobutyrate CoA ligase; PFAM: Aminotransferase, class I/classII
YP_004557861.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557862.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557863.1	PFAM: Amidase; KEGG: swi:Swit_0927 amidase
YP_004557864.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: pca:Pcar_0906 putative ATP-binding component of dipeptide transport system; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004557865.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: sit:TM1040_2684 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004557866.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_0391 binding-protein-dependent transport systems inner membrane component
YP_004557867.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tth:TTC0972 dipeptide transport system permease protein DppB
YP_004557868.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: drm:Dred_0389 extracellular solute-binding protein
YP_004557869.1	PFAM: Transposase, IS4-like; KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004557870.1	KEGG: glo:Glov_3666 transposase IS4 family protein
YP_004557871.1	KEGG: rlg:Rleg_0729 hypothetical protein
YP_004557872.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smd:Smed_5979 Rieske (2Fe-2S) domain-containing protein
YP_004557873.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_5980 LysR family transcriptional regulator
YP_004557874.1	PFAM: ROSMUCR transcriptional regulator; KEGG: smd:Smed_5993 MucR family transcriptional regulator
YP_004557876.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: rhi:NGR_c04090 co-chaperonin GroES; SMART: Chaperonin Cpn10
YP_004557877.1	KEGG: tgo:TGME49_089520 hypothetical protein
YP_004557878.1	KEGG: smd:Smed_4834 hypothetical protein
YP_004557879.1	KEGG: atu:Atu4214 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004557880.1	KEGG: abb:ABBFA_002548 hypothetical protein
YP_004557881.1	PFAM: Protein of unknown function DUF2280; KEGG: rlt:Rleg2_2433 hypothetical protein
YP_004557882.1	KEGG: rlt:Rleg2_2434 hypothetical protein
YP_004557883.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rlt:Rleg2_1740 GCN5-related N-acetyltransferase
YP_004557884.1	KEGG: bpm:BURPS1710b_2483 hypothetical protein
YP_004557885.1	manually curated; KEGG: rle:RL0456B putative transposase related protein
YP_004557886.1	KEGG: rle:RL0457 putative transposase
YP_004557887.1	KEGG: smd:Smed_1295 hypothetical protein
YP_004557888.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: mes:Meso_0575 twin-arginine translocation pathway signal
YP_004557889.1	KEGG: cak:Caul_5415 transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004557890.1	KEGG: mes:Meso_0574 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004557891.1	KEGG: ebi:EbC_28560 short chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004557892.1	KEGG: bvu:BVU_0542 two-component system sensor histidine kinase/response regulator, hybrid
YP_004557893.1	KEGG: mch:Mchl_1781 protein of unknown function DUF1044
YP_004557894.1	PFAM: Helix-turn-helix type 3; KEGG: rlg:Rleg_7082 transcriptional regulator, XRE family
YP_004557895.1	PFAM: Integrase, catalytic core; KEGG: smd:Smed_6420 integrase catalytic region
YP_004557896.1	KEGG: rlt:Rleg2_2296 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004557897.1	KEGG: smd:Smed_5757 putative circadian clock protein, KaiC; SMART: ATPase, AAA+ type, core
YP_004557898.1	KEGG: smd:Smed_5756 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, HWE region; SMART: Signal transduction histidine kinase, HWE region
YP_004557899.1	KEGG: smd:Smed_5755 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004557900.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: rhi:NGR_b11690 sulfate ABC transporter, ATP-binding protein; PFAM: ABC transporter-like
YP_004557901.1	KEGG: rhi:NGR_b14530 probable ABC transporter, sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004557902.1	KEGG: mcc:702650 kinesin-like protein KIFC2-like
YP_004557903.1	PFAM: CsbD-like; KEGG: atu:Atu0782 hypothetical protein
YP_004557904.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: smd:Smed_5663 acyl-CoA dehydrogenase type 2
YP_004557905.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: smd:Smed_5662 extracellular solute-binding protein
YP_004557906.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: smd:Smed_5659 aldo/keto reductase
YP_004557907.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5658 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004557908.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: smd:Smed_5657 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004557909.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5656 binding-protein-dependent transport systems inner membrane component
YP_004557910.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5655 binding-protein-dependent transport systems inner membrane component
YP_004557911.1	KEGG: smd:Smed_5654 hypothetical protein
YP_004557912.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: smd:Smed_5653 acyl-CoA dehydrogenase type 2
YP_004557913.1	KEGG: smd:Smed_5652 hypothetical protein
YP_004557914.1	KEGG: smd:Smed_5651 NmrA family protein
YP_004557915.1	PFAM: Monooxygenase, FAD-binding; KEGG: smd:Smed_5650 monooxygenase FAD-binding
YP_004557916.1	PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: smd:Smed_5649 hypothetical protein
YP_004557917.1	KEGG: smd:Smed_5648 putative nitrilotriacetate monooxygenase component A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Luciferase-like, subgroup
YP_004557918.1	KEGG: rhi:NGR_b20780 possible sulfite oxidase; PFAM: Oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation
YP_004557919.1	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: rhi:NGR_b14600 filamentation induced by cAMP protein Fic-like hypothetical protein
YP_004557921.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_03005 LysR family regulatory helix-turn-helix protein 88
YP_004557922.1	KEGG: axy:AXYL_03004 NAD dependent epimerase/dehydratase family protein 5
YP_004557923.1	KEGG: xau:Xaut_1237 hypothetical protein
YP_004557924.1	PFAM: Transposase, IS4-like; Transposase InsH, N-terminal; KEGG: rle:pRL70077 putative transposase
YP_004557925.1	KEGG: smd:Smed_5172 hemolysin-type calcium-binding region
YP_004557926.1	PFAM: Diguanylate phosphodiesterase, EAL domain; KEGG: smd:Smed_4347 diguanylate phosphodiesterase
YP_004557927.1	KEGG: bbt:BBta_1746 carbon monoxide dehydrogenase, CoxC signalling protein; PFAM: LytTr, DNA-binding domain; MHYT; SMART: LytTr, DNA-binding domain
YP_004557928.1	KEGG: smd:Smed_1868 hypothetical protein
YP_004557929.1	manually curated; KEGG: smd:Smed_5213 hypothetical protein
YP_004557930.1	KEGG: smd:Smed_1877 hypothetical protein
YP_004557931.1	KEGG: smd:Smed_1878 hypothetical protein
YP_004557932.1	KEGG: smd:Smed_1879 hypothetical protein
YP_004557933.1	KEGG: smd:Smed_1880 hypothetical protein
YP_004557934.1	PFAM: Lipocalin-like; KEGG: mlo:mlr4717 outer membrane lipoprotein
YP_004557935.1	KEGG: rhi:NGR_b17140 hypothetical protein
YP_004557936.1	KEGG: smd:Smed_1888 hypothetical protein
YP_004557937.1	KEGG: pap:PSPA7_2410 hypothetical protein
YP_004557938.1	KEGG: bts:Btus_0817 phosphoribosylformylglycinamidine synthase I
YP_004557939.1	KEGG: dac:Daci_3242 hypothetical protein
YP_004557940.1	KEGG: bbr:BB3501 hypothetical protein
YP_004557941.1	KEGG: bpe:BP3380 hypothetical protein
YP_004557942.1	PFAM: Methyltransferase type 11; KEGG: rec:RHECIAT_PC0000111 probable methyltransferase protein
YP_004557943.1	KEGG: ret:RHE_PE00159 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004557944.1	PFAM: Protein of unknown function DUF2191; KEGG: rhi:NGR_b04670 hypothetical protein
YP_004557945.1	KEGG: olu:OSTLU_16584 predicted protein
YP_004557946.1	KEGG: rlg:Rleg_5721 hypothetical protein
YP_004557947.1	KEGG: mes:Meso_1574 hypothetical protein
YP_004557948.1	PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; KEGG: sus:Acid_2416 PhoPQ-activated pathogenicity-related protein
YP_004557949.1	KEGG: rhi:NGR_b03520 hypothetical protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease
YP_004557950.1	PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; KEGG: rhi:NGR_b03530 putative LysA, diaminopimelate decarboxylase LysA
YP_004557951.1	KEGG: rhi:NGR_b03540 predicted CysK, cysteine synthase CysK; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004557952.1	PFAM: Opine dehydrogenase; KEGG: rhi:NGR_b03550 hypothetical protein
YP_004557953.1	PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; FhuF/siderophore biosynthesis protein; KEGG: rhi:NGR_b03560 putative siderophore biosynthesis protein
YP_004557954.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rhi:NGR_b03570 hypothetical transport protein
YP_004557955.1	PFAM: Periplasmic binding protein; KEGG: rhi:NGR_b03580 putative iron ABC transport system, solute-binding protein
YP_004557956.1	KEGG: rhi:NGR_b03590 putative TonB dependent/ligand-gated channel TonB; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug
YP_004557957.1	PFAM: Transposase, IS4-like; KEGG: oan:Oant_2732 transposase IS4 family protein
YP_004557958.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: atu:Atu1624 TetR family transcriptional regulator
YP_004557959.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rlt:Rleg2_6531 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004557960.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ara:Arad_0504 hypothetical protein
YP_004557961.1	KEGG: deb:DehaBAV1_0178 hypothetical protein
YP_004557962.1	KEGG: avi:Avi_0672 hypothetical protein
YP_004557963.1	KEGG: mfa:Mfla_1421 phospholipase D/transphosphatidylase
YP_004557964.1	KEGG: rhi:NGR_b00470 hypothetical protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004557965.1	PFAM: PilT protein, N-terminal; KEGG: smd:Smed_6500 PilT domain-containing protein
YP_004557966.1	KEGG: smd:Smed_6498 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein
YP_004557967.1	PFAM: Integrase, catalytic core, phage; KEGG: smd:Smed_5431 phage integrase family protein
YP_004557968.1	PFAM: Replication protein-C C-terminal; Replication protein C; KEGG: rle:pRL70003 replication initiation protein RepC
YP_004557969.1	TIGRFAM: Plasmid partitioning protein, RepB; ParB-like partition protein; PFAM: RepB plasmid partition; ParB-like nuclease; KEGG: rlg:Rleg_6316 plasmid partitioning protein RepB; SMART: ParB-like nuclease
YP_004557970.1	KEGG: avi:Avi_9501 replication protein A; TIGRFAM: Plasmid partitioning protein, RepA; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004557971.1	KEGG: ara:Arad_12015 phosphoribosylamine-glycine ligase