-- dump date 20140620_065636 -- class Genbank::CDS -- table cds_note -- id note YP_003522630.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: nmu:Nmul_A0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003522631.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, subunit beta; KEGG: nmu:Nmul_A0002 DNA polymerase III, subunit beta; PFAM: DNA polymerase III beta chain YP_003522632.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: tbd:Tbd_0003 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein YP_003522633.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; KEGG: mfa:Mfla_0227 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein YP_003522634.1 PFAM: protein of unknown function DUF494; KEGG: mfa:Mfla_0190 hypothetical protein YP_003522635.1 KEGG: nmu:Nmul_A0395 DNA processing protein DprA, TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_003522636.1 KEGG: mfa:Mfla_0188 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM YP_003522637.1 TIGRFAM: peptide deformylase; KEGG: mfa:Mfla_0187 peptide deformylase; PFAM: formylmethionine deformylase YP_003522638.1 KEGG: tbd:Tbd_0015 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003522639.1 KEGG: mei:Msip34_0187 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_003522640.1 manually curated; KEGG: app:CAP2UW1_0048 hypothetical protein YP_003522641.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A0390 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003522642.1 KEGG: reh:H16_A3694 response regulator; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver YP_003522643.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase domain protein; KEGG: tbd:Tbd_0159 transketolase; SMART: transketolase central region YP_003522644.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: mfa:Mfla_2248 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003522645.1 KEGG: mei:Msip34_0485 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_003522646.1 TIGRFAM: pyruvate kinase; KEGG: tbd:Tbd_0162 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003522647.1 TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; KEGG: net:Neut_1581 fructose-1,6-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003522648.1 PFAM: Cytochrome C class I; KEGG: mei:Msip34_0374 Cytochrome C class I YP_003522649.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_1098 hypothetical protein YP_003522650.1 KEGG: nmu:Nmul_A0687 LysR family transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR YP_003522651.1 KEGG: tbd:Tbd_2638 ribulose bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like YP_003522652.1 PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ YP_003522653.1 KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_003522654.1 PFAM: inositol phosphatase/fructose-16-bisphosphatase; KEGG: noc:Noc_0021 fructose-1,6-bisphosphatase YP_003522655.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: mmb:Mmol_0525 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003522656.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: mei:Msip34_0489 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003522657.1 KEGG: dvm:DvMF_0391 carbonate dehydratase; PFAM: carbonic anhydrase YP_003522658.1 KEGG: tgr:Tgr7_0105 hypothetical protein YP_003522659.1 PFAM: phosphoribosyltransferase; manually curated; KEGG: app:CAP2UW1_0687 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase YP_003522660.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mmb:Mmol_2247 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_003522661.1 PFAM: conserved hypothetical protein; KEGG: afw:Anae109_0361 hypothetical protein YP_003522662.1 manually curated; KEGG: bac:BamMC406_5360 hypothetical protein YP_003522663.1 KEGG: dar:Daro_0128 major facilitator transporter; TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1 YP_003522664.1 KEGG: nmu:Nmul_A0222 methionine biosynthesis MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein YP_003522665.1 PFAM: alpha/beta hydrolase fold; manually curated; KEGG: mei:Msip34_2523 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase YP_003522666.1 KEGG: mmb:Mmol_2176 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase YP_003522667.1 KEGG: nmu:Nmul_A2080 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_003522668.1 KEGG: nmu:Nmul_A2629 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_003522669.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; KEGG: mfa:Mfla_2663 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003522670.1 KEGG: nmu:Nmul_A2627 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_003522671.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: eba:ebA1138 dimethyladenosine transferase; SMART: ribosomal RNA adenine methylase transferase-like YP_003522672.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: cvi:CV_4231 pyridoxal phosphate biosynthesis protein; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_003522673.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dar:Daro_3658 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003522674.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: nmu:Nmul_A0521 organic solvent tolerance protein YP_003522675.1 PFAM: aminoglycoside phosphotransferase; KEGG: tmz:Tmz1t_1453 aminoglycoside phosphotransferase YP_003522676.1 PFAM: nucleotidyl transferase; KEGG: tmz:Tmz1t_1452 nucleotidyl transferase YP_003522677.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: mei:Msip34_0582 peptidase M24 YP_003522678.1 KEGG: nmu:Nmul_A0130 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding YP_003522679.1 KEGG: app:CAP2UW1_3892 adenylate/guanylate cyclase; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase YP_003522680.1 KEGG: mmb:Mmol_1255 methyl-accepting chemotaxis sensory transducer YP_003522681.1 KEGG: mei:Msip34_2582 UDP-N-acetylmuramate; TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003522682.1 PFAM: protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486 YP_003522684.1 KEGG: tye:THEYE_A0721 hypothetical protein YP_003522685.1 KEGG: stp:Strop_3018 band 7 protein YP_003522686.1 KEGG: mfa:Mfla_0379 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type YP_003522687.1 KEGG: chl:Chy400_0933 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type YP_003522688.1 KEGG: dma:DMR_29960 hypothetical protein YP_003522689.1 KEGG: nmu:Nmul_A0045 B12-dependent methionine synthase; TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region YP_003522690.1 KEGG: azo:azo3758 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003522691.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: neu:NE0193 Mg(2+) chelatase family protein; SMART: AAA ATPase YP_003522692.1 PFAM: protein of unknown function DUF526; KEGG: mms:mma_0167 hypothetical protein YP_003522693.1 PFAM: conserved hypothetical protein; KEGG: dar:Daro_0052 hypothetical protein YP_003522694.1 PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_0053 nitrogen regulatory protein P-II YP_003522695.1 KEGG: dar:Daro_0054 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_003522696.1 KEGG: lch:Lcho_4374 hypothetical protein YP_003522697.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mei:Msip34_1699 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003522698.1 KEGG: lhk:LHK_00700 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003522699.1 PFAM: PEBP family protein; KEGG: cja:CJA_0422 YbcL YP_003522700.1 KEGG: cyn:Cyan7425_4033 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein YP_003522701.1 KEGG: afr:AFE_1389 hypothetical protein YP_003522702.1 KEGG: enigma; enigma (LIM domain protein) YP_003522703.1 PFAM: polysaccharide deacetylase; KEGG: app:CAP2UW1_4298 polysaccharide deacetylase YP_003522704.1 PFAM: MltA-interacting MipA family protein; KEGG: pct:PC1_2702 MltA-interacting MipA family protein YP_003522705.1 KEGG: lch:Lcho_0430 zinc finger CDGSH-type domain-containing protein; PFAM: iron sulphur domain-containing, CDGSH-type; SMART: zinc finger CDGSH-type domain protein YP_003522707.1 KEGG: mei:Msip34_0951 UreA carboxylase-associated protein 2; TIGRFAM: urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989 YP_003522708.1 KEGG: bpy:Bphyt_5229 UreA carboxylase-associated protein 1; TIGRFAM: urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989 YP_003522709.1 TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; KEGG: nmu:Nmul_A0943 allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; Allophanate hydrolase subunit 1 YP_003522710.1 KEGG: nmu:Nmul_A0944 allophanate hydrolase; TIGRFAM: allophanate hydrolase; PFAM: Amidase YP_003522711.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bxe:Bxe_B1379 hypothetical protein YP_003522712.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tcx:Tcr_1801 hypothetical protein YP_003522713.1 KEGG: bmj:BMULJ_03684 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003522714.1 KEGG: bmj:BMULJ_03683 probable reverse transcriptase YP_003522715.1 KEGG: kko:Kkor_0057 hypothetical protein YP_003522716.1 KEGG: swd:Swoo_3734 GDSL family lipase YP_003522717.1 KEGG: app:CAP2UW1_1572 PilT protein domain protein; manually curated; PFAM: PilT protein domain protein YP_003522718.1 KEGG: app:CAP2UW1_1571 transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein YP_003522719.1 PFAM: NMT1/THI5 like domain protein; KEGG: dar:Daro_0081 ABC transport system substrate-binding protein YP_003522720.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_0080 binding-protein dependent transport system inner membrane protein YP_003522721.1 KEGG: bxe:Bxe_B1387 nitrate/sulfonate/bicarbonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_003522722.1 PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase YP_003522723.1 KEGG: dar:Daro_0077 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region YP_003522724.1 PFAM: NikR nickel binding; CopG domain protein DNA-binding domain protein; KEGG: dar:Daro_0076 CopG family transcriptional regulator YP_003522725.1 TIGRFAM: glutamate racemase; KEGG: psa:PST_3179 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003522726.1 KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003522727.1 KEGG: tgr:Tgr7_2259 hypothetical protein YP_003522728.1 PFAM: protein of unknown function DUF1234; KEGG: sdl:Sdel_0834 protein of unknown function DUF1234 YP_003522729.1 KEGG: tbd:Tbd_2408 glutamate--cysteine ligase GshA; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA YP_003522730.1 PFAM: ApbE family lipoprotein; KEGG: dar:Daro_0009 ApbE-like lipoprotein YP_003522731.1 KEGG: solute carrier family 37 member 2 (glycerol-3-phosphate transporter YP_003522732.1 PFAM: PTS system fructose subfamily IIA component; KEGG: mmb:Mmol_2160 PTS system fructose subfamily IIA component YP_003522733.1 KEGG: mfa:Mfla_0147 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003522734.1 KEGG: nmu:Nmul_A0220 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003522735.1 KEGG: mei:Msip34_2508 hypothetical protein YP_003522736.1 KEGG: nmu:Nmul_A2078 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003522737.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM YP_003522738.1 PFAM: Fimbrial assembly family protein; KEGG: tbd:Tbd_0203 type IV pilus assembly protein PilN YP_003522739.1 PFAM: pilus assembly protein PilO; KEGG: neu:NE2314 fimbrial type-4 assembly membrane transmembrane protein YP_003522740.1 PFAM: pilus assembly protein PilP; KEGG: tbd:Tbd_0205 type IV pilus assembly protein PilP YP_003522741.1 KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain YP_003522742.1 KEGG: har:HEAR3120 bifunctional 3-dehydroquinate synthase/shikimate kinase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase YP_003522743.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: nmu:Nmul_A0704 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region YP_003522744.1 KEGG: mei:Msip34_2803 glutamate synthase (ferredoxin); PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase subunit alpha domain protein YP_003522745.1 KEGG: tmz:Tmz1t_0843 glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003522746.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: azo:azo3979 uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D) YP_003522747.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: nmu:Nmul_A2327 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein YP_003522748.1 KEGG: nwi:Nwi_1155 hypothetical protein YP_003522749.1 PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA4737 FAD dependent oxidoreductase YP_003522750.1 PFAM: protein of unknown function DUF88; KEGG: tgr:Tgr7_1190 protein of unknown function DUF88 YP_003522751.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: gvi:gvip312 ferredoxin--NADP+ reductase YP_003522752.1 KEGG: rpf:Rpic12D_5285 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_003522753.1 KEGG: pna:Pnap_2775 transmembrane protein YP_003522754.1 PFAM: aldo/keto reductase; KEGG: rpf:Rpic12D_4663 aldo/keto reductase YP_003522755.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: mei:Msip34_2807 arginyl-tRNA synthetase YP_003522756.1 PFAM: sporulation domain protein; KEGG: cvi:CV_3999 hypothetical protein YP_003522757.1 PFAM: DSBA oxidoreductase; KEGG: nmu:Nmul_A2454 DsbA oxidoreductase YP_003522758.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A2453 short chain dehydrogenase YP_003522759.1 KEGG: mgm:Mmc1_0358 ubiquinol-Cytochrome C reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-Cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal YP_003522760.1 PFAM: cytochrome b/b6 domain; KEGG: mag:amb4089 cytochrome b/c1 YP_003522761.1 PFAM: Cytochrome C1; KEGG: pla:Plav_2244 Cytochrome C1 YP_003522762.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; KEGG: mfa:Mfla_2488 aspartyl/glutamyl-tRNA amidotransferase subunit B; SMART: Asn/Gln amidotransferase YP_003522763.1 KEGG: nmu:Nmul_A0322 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_003522764.1 KEGG: azo:azo0173 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit YP_003522765.1 KEGG: nmu:Nmul_A0320 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_003522766.1 KEGG: nmu:Nmul_A0319 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_003522767.1 KEGG: har:HEAR0170 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD YP_003522768.1 TIGRFAM: penicillin-binding protein 2; KEGG: nmu:Nmul_A0317 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003522769.1 KEGG: nmu:Nmul_A0316 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_003522770.1 KEGG: azo:azo0179 lipoprotein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein YP_003522771.1 PFAM: protein of unknown function DUF1304; KEGG: mms:mma_1696 hypothetical protein YP_003522772.1 KEGG: tgr:Tgr7_2218 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003522773.1 KEGG: rfr:Rfer_3913 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003522774.1 KEGG: azo:azo0598 SAM dependent methyl transferase; PFAM: protein of unknown function Met10; SMART: PUA domain containing protein YP_003522775.1 KEGG: mei:Msip34_0172 tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_003522776.1 KEGG: dar:Daro_0193 hypothetical protein; PFAM: protein of unknown function DUF484; SMART: GAF domain protein YP_003522777.1 TIGRFAM: diaminopimelate epimerase; KEGG: dar:Daro_0192 diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003522778.1 KEGG: tbd:Tbd_2525 hypothetical protein; PFAM: CoA-binding domain protein; SMART: CoA-binding domain protein YP_003522779.1 PFAM: ATP-binding region ATPase domain protein; KEGG: oca:OCAR_7493 sensor histidine kinase YP_003522780.1 KEGG: mpt:Mpe_A3237 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003522781.1 KEGG: tmz:Tmz1t_1630 glutamate 5-kinase YP_003522782.1 KEGG: membrane associated protein YP_003522783.1 PFAM: nitrate and nitrite sensing domain protein; ANTAR domain protein; KEGG: mfa:Mfla_0329 response regulator receiver/ANTAR domain-containing protein YP_003522784.1 KEGG: abo:ABO_0851 nitrate transport ATP-binding protein YP_003522785.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb0536 ABC-type nitrate/sulfonate/bicarbonate transport system YP_003522786.1 TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: sde:Sde_2266 regulatory proteins, AsnC/Lrp; SMART: AAA ATPase YP_003522787.1 KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003522788.1 KEGG: pag:PLES_35491 assimilatory nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_003522789.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_05823 anaerobic dehydrogenase YP_003522790.1 TIGRFAM: plasma-membrane proton-efflux P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afr:AFE_3086 plasma-membrane proton-efflux P-type ATPase, SMART: cation transporting ATPase domain protein YP_003522791.1 KEGG: gem:GM21_3035 large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel YP_003522792.1 KEGG: eba:ebA3372 hypothetical protein YP_003522793.1 PFAM: Lytic transglycosylase catalytic; KEGG: nmu:Nmul_A2449 lytic transglycosylase, catalytic YP_003522794.1 KEGG: cvi:CV_2032 tRNA adenylyltransferase; manually curated; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain YP_003522795.1 KEGG: dar:Daro_3867 hypothetical protein YP_003522796.1 PFAM: protein of unknown function DUF185; KEGG: app:CAP2UW1_0267 protein of unknown function DUF185 YP_003522797.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0336 pteridine reductase YP_003522798.1 PFAM: PP-loop domain protein; KEGG: rpf:Rpic12D_0068 PP-loop domain protein YP_003522799.1 KEGG: bba:Bd2616 outer membrane protein YP_003522800.1 PFAM: conserved hypothetical protein; KEGG: mmb:Mmol_1191 hypothetical protein YP_003522801.1 PFAM: cytochrome B561; KEGG: pmy:Pmen_1714 cytochrome b561 YP_003522802.1 PFAM: peptidase U32; KEGG: neu:NE1979 U32 family peptidase YP_003522803.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: tbd:Tbd_2517 5,10-methylenetetrahydrofolate reductase (FadH); PFAM: methylenetetrahydrofolate reductase YP_003522804.1 PFAM: membrane protein of unknown function; KEGG: app:CAP2UW1_0396 membrane protein of unknown function YP_003522805.1 PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; manually curated; KEGG: dar:Daro_0186 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_003522806.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dar:Daro_0188 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003522807.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: mfa:Mfla_0195 lipid A biosynthesis acyltransferase YP_003522808.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: eba:ebA3949 lipid A biosynthesis lauroyl acyltransferase YP_003522809.1 PFAM: protein of unknown function DUF559; KEGG: mca:MCA0029 hypothetical protein YP_003522810.1 KEGG: dar:Daro_0415 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein YP_003522811.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: mms:mma_3559 hypothetical protein YP_003522812.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: dar:Daro_0423 D-alanyl-D-alanine carboxypeptidase PBP3; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_003522813.1 KEGG: nmu:Nmul_A2364 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_003522814.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: mca:MCA0496 hypothetical protein YP_003522815.1 KEGG: tmz:Tmz1t_1419 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SMART: chaperonin Cpn10 YP_003522816.1 KEGG: nmu:Nmul_A2344 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_003522817.1 PFAM: peptidase S24/S26A/S26B, conserved region; KEGG: neu:NE0318 hypothetical protein YP_003522818.1 KEGG: ctu:Ctu_05280 sugar fermentation stimulation protein B YP_003522819.1 KEGG: pag:PLES_15511 hypothetical protein YP_003522820.1 PFAM: transposase-like Mu ; Integrase catalytic region; KEGG: lhk:LHK_01163 transposase YP_003522821.1 KEGG: dvm:DvMF_0714 bacteriophage DNA transposition B protein YP_003522822.1 KEGG: dvu:DVU2690 hypothetical protein YP_003522823.1 KEGG: dvm:DvMF_0716 regulatory protein, LacI YP_003522824.1 KEGG: hypothetical protein YP_003522825.1 KEGG: hypothetical protein ; K11293 protein HIRA/HIR1 YP_003522826.1 KEGG: ubiquitin-protein ligase YP_003522827.1 KEGG: hypothetical protein ; K01265 methionyl aminopeptidase YP_003522828.1 KEGG: mfa:Mfla_2720 hypothetical protein YP_003522829.1 KEGG: bgl:bglu_1g15270 hypothetical protein YP_003522830.1 KEGG: bgl:bglu_1g15270 hypothetical protein YP_003522831.1 KEGG: bgl:bglu_1g15260 hypothetical protein YP_003522832.1 manually curated; KEGG: bgl:bglu_1g15250 reverse transcriptase YP_003522833.1 KEGG: pol:Bpro_3758 hypothetical protein YP_003522834.1 KEGG: pol:Bpro_3759 hypothetical protein YP_003522836.1 KEGG: mba:Mbar_A2238 hypothetical protein YP_003522837.1 KEGG: mno:Mnod_3592 hypothetical protein YP_003522838.1 KEGG: mca:MCA2947 prophage MuMc02, DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003522840.1 KEGG: dae:Dtox_4218 hypothetical protein YP_003522841.1 PFAM: protein of unknown function DUF1018; KEGG: pol:Bpro_3768 hypothetical protein YP_003522842.1 KEGG: bcj:BCAL1580 hypothetical protein YP_003522843.1 KEGG: pca:Pcar_0519 hypothetical protein YP_003522844.1 KEGG: dvu:DVU2697 hypothetical protein YP_003522845.1 KEGG: bcj:BCAS0534 holin YP_003522846.1 PFAM: Lytic transglycosylase catalytic; KEGG: bcj:BCAS0533 soluble lytic murein transglycosylase YP_003522847.1 KEGG: hypothetical protein YP_003522848.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator YP_003522849.1 KEGG: mca:MCA2936 hypothetical protein YP_003522850.1 KEGG: mca:MCA2935 hypothetical protein YP_003522851.1 PFAM: protein of unknown function DUF1804; KEGG: pag:PLES_15701 conserved hypothetical DNA-binding protein YP_003522852.1 TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein YP_003522853.1 PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 hypothetical protein YP_003522854.1 KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7 YP_003522855.1 TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein YP_003522856.1 PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein YP_003522857.1 KEGG: pag:PLES_15801 hypothetical protein YP_003522858.1 PFAM: Mu-like major head subunit gpT, prophage; KEGG: pag:PLES_15811 major head subunit protein YP_003522859.1 KEGG: nca:Noca_3054 zinc finger, DksA/TraR C4-type YP_003522860.1 KEGG: pag:PLES_25461 gene 66 protein YP_003522861.1 PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein YP_003522862.1 PFAM: Domain of unknown function DUF1834; KEGG: dvm:DvMF_0738 domain of unknown function DUF1834 YP_003522863.1 KEGG: dvm:DvMF_0739 hypothetical protein YP_003522864.1 PFAM: Mu tail sheath family protein; KEGG: lhk:LHK_01152 probable phage sheath protein YP_003522865.1 KEGG: cvi:CV_0349 hypothetical protein YP_003522866.1 KEGG: bbr:BB3619 hypothetical protein YP_003522868.1 PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein YP_003522869.1 PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein YP_003522870.1 PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein YP_003522871.1 KEGG: nma:NMA1829 hypothetical protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein YP_003522872.1 PFAM: GP46 family protein; KEGG: hsm:HSM_0683 phage GP46 family protein YP_003522873.1 PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47 YP_003522874.1 PFAM: protein of unknown function DUF2313, Mu protein gp48; KEGG: pol:Bpro_3732 hypothetical protein YP_003522875.1 KEGG: xau:Xaut_4480 tail collar domain-containing protein YP_003522876.1 KEGG: aav:Aave_1726 hypothetical protein YP_003522877.1 KEGG: pol:Bpro_3729 hypothetical protein YP_003522878.1 PFAM: Mu-like prophage protein Com; KEGG: bcm:Bcenmc03_0187 hypothetical protein YP_003522879.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cvi:CV_2111 methyltransferase YP_003522880.1 KEGG: dar:Daro_0439 hypothetical protein YP_003522881.1 KEGG: sat:SYN_01481 adenylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003522882.1 KEGG: dol:Dole_3024 hypothetical protein; PFAM: Fibronectin type III domain protein; hypothetical protein; NHL repeat containing protein; SMART: Tetratricopeptide repeat; Fibronectin type III domain protein YP_003522883.1 KEGG: dol:Dole_3025 hypothetical protein YP_003522884.1 TIGRFAM: glutamyl-tRNA reductase; KEGG: nmu:Nmul_A2642 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_003522885.1 KEGG: nmu:Nmul_A2641 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein YP_003522886.1 KEGG: mmb:Mmol_2242 modification methylase, HemK family; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_003522887.1 KEGG: mei:Msip34_0037 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_003522888.1 KEGG: mei:Msip34_0036 histidine kinase internal region; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003522889.1 KEGG: azo:azo0991 alginate biosynthesis regulatory protein AlgR; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; LytTr DNA-binding region YP_003522890.1 KEGG: tbd:Tbd_2611 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein YP_003522891.1 KEGG: tbd:Tbd_2610 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003522892.1 KEGG: plt:Plut_1442 hypothetical protein YP_003522893.1 KEGG: plt:Plut_1442 hypothetical protein YP_003522894.1 KEGG: plt:Plut_1442 hypothetical protein YP_003522895.1 KEGG: nmu:Nmul_A2691 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase YP_003522896.1 TIGRFAM: porphobilinogen deaminase; KEGG: mei:Msip34_0034 porphobilinogen deaminase; PFAM: porphobilinogen deaminase YP_003522897.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: nmu:Nmul_A2689 uroporphyrinogen-III synthase YP_003522898.1 PFAM: protein of unknown function DUF513 hemX; KEGG: nmu:Nmul_A2688 hypothetical protein YP_003522899.1 PFAM: HemY domain protein; KEGG: nmu:Nmul_A2687 HemY-like YP_003522900.1 KEGG: mem:Memar_1692 hexapaptide repeat-containing transferase YP_003522901.1 KEGG: sde:Sde_0311 hypothetical protein YP_003522902.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: tbd:Tbd_2563 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_003522903.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: neu:NE0595 oxidoreductase protein YP_003522904.1 TIGRFAM: RelA/SpoT family protein; KEGG: mfa:Mfla_1298 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain protein YP_003522905.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: tbd:Tbd_2223 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like YP_003522906.1 KEGG: mei:Msip34_2513 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_003522907.1 TIGRFAM: anthranilate synthase component I; KEGG: mei:Msip34_2514 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003522908.1 KEGG: tbd:Tbd_2229 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003522909.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: tbd:Tbd_2230 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003522910.1 KEGG: pcr:Pcryo_1767 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003522911.1 KEGG: acr:Acry_2098 protein kinase; PFAM: serine/threonine-protein kinase-like domain; response regulator receiver; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; response regulator receiver YP_003522912.1 PFAM: ApaG domain protein; KEGG: mei:Msip34_2781 ApaG domain protein YP_003522913.1 KEGG: tbd:Tbd_2232 membrane-bound lytic murein transglycosylase A; manually curated; PFAM: MltA domain protein; 3D domain protein YP_003522914.1 KEGG: tbd:Tbd_1981 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003522915.1 KEGG: bba:Bd1971 hypothetical protein; PFAM: EAL domain protein; cyclic nucleotide-binding; SMART: EAL domain protein; cyclic nucleotide-binding YP_003522916.1 KEGG: atc:AGR_C_2981 hypothetical protein YP_003522917.1 manually curated; KEGG: mei:Msip34_1876 hypothetical protein YP_003522918.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC YP_003522919.1 KEGG: nmu:Nmul_A2444 ubiquinone biosynthesis hydroxylase family protein; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding YP_003522920.1 KEGG: mfa:Mfla_0351 dihydrouridine synthase TIM-barrel protein nifR3; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS YP_003522921.1 PFAM: helix-turn-helix Fis-type; KEGG: nmu:Nmul_A0132 fis family transcriptional regulator YP_003522922.1 SMART: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: nmu:Nmul_A0133 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_003522923.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: mei:Msip34_0380 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain YP_003522924.1 PFAM: SUA5/yciO/yrdC domain; KEGG: mei:Msip34_0379 SUA5/YciO/YrdC domain protein YP_003522925.1 KEGG: mms:mma_0542 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase YP_003522926.1 PFAM: methyltransferase type 12; KEGG: pin:Ping_1362 methyltransferase type 12 YP_003522927.1 KEGG: hna:Hneap_0097 hypothetical protein YP_003522928.1 KEGG: rfr:Rfer_3638 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003522929.1 PFAM: methyltransferase type 11; KEGG: nmu:Nmul_A0349 UbiE/COQ5 methyltransferase YP_003522930.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mei:Msip34_0019 transcriptional regulator, LysR family YP_003522931.1 PFAM: rubrerythrin; KEGG: tbd:Tbd_1106 oxidative stress related rubrerythrin protein YP_003522932.1 KEGG: tgr:Tgr7_0836 protein of unknown function DUF224 cysteine-rich region domain protein YP_003522933.1 KEGG: nmu:Nmul_A1845 hypothetical protein YP_003522934.1 PFAM: Ferritin Dps family protein; KEGG: ava:Ava_0759 ferritin and Dps YP_003522935.1 KEGG: bxe:Bxe_A2910 signal peptide transmembrane protein YP_003522936.1 PFAM: NnrS family protein; KEGG: tmz:Tmz1t_2607 NnrS family protein YP_003522937.1 manually curated; KEGG: hypothetical protein ; K05747 Wiskott-Aldrich syndrome protein YP_003522938.1 KEGG: hha:Hhal_0031 pyridoxine 5'-phosphate synthase YP_003522939.1 KEGG: azo:azo0479 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_003522940.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: nmu:Nmul_A0884 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_003522941.1 KEGG: azo:azo0988 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; cyclic nucleotide-binding; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; cyclic nucleotide-binding YP_003522942.1 KEGG: mmb:Mmol_0186 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_003522943.1 KEGG: azo:azo0988 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003522944.1 PFAM: glycosyl transferase family 9; KEGG: pol:Bpro_0465 glycosyl transferase family protein YP_003522945.1 PFAM: GtrA family protein; KEGG: pna:Pnap_0318 GtrA family protein YP_003522946.1 PFAM: glycosyl transferase family 39; KEGG: pnu:Pnuc_1247 glycosyl transferase family protein YP_003522947.1 KEGG: pst:PSPTO_1897 BNR/Asp-box repeat protein YP_003522948.1 KEGG: pna:Pnap_3074 hypothetical protein YP_003522949.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfs:PFLU6049 transport-related membrane protein YP_003522950.1 KEGG: tbd:Tbd_0863 trans-hexaprenyltranstransferase; PFAM: polyprenyl synthetase YP_003522951.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: mmb:Mmol_0655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein YP_003522952.1 KEGG: app:CAP2UW1_0560 hypothetical protein YP_003522953.1 TIGRFAM: stationary-phase survival protein SurE; KEGG: nmu:Nmul_A0495 stationary phase survival protein SurE; PFAM: Survival protein SurE YP_003522954.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: mfa:Mfla_1825 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003522955.1 manually curated; PFAM: peptidase M23; peptidoglycan-binding lysin domain; KEGG: app:CAP2UW1_1365 peptidase M23; SMART: peptidoglycan-binding LysM YP_003522956.1 KEGG: net:Neut_1287 radical SAM domain-containing protein YP_003522957.1 KEGG: hypothetical protein YP_003522958.1 PFAM: Na+/solute symporter; KEGG: rso:RSc0463 sodium/solute symporter transmembrane protein YP_003522959.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lhk:LHK_00165 PhoB; SMART: response regulator receiver; transcriptional regulator domain protein YP_003522960.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: nmu:Nmul_A2232 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003522961.1 KEGG: app:CAP2UW1_0331 hypothetical protein YP_003522962.1 PFAM: FAD linked oxidase domain protein; KEGG: mei:Msip34_2262 FAD linked oxidase domain protein YP_003522963.1 KEGG: tmz:Tmz1t_2212 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX YP_003522964.1 KEGG: tnp:Tnap_1460 DNA-(apurinic or apyrimidinic site) lyase / pyrimidine dimer DNA glycosylase YP_003522965.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein YP_003522966.1 PFAM: TatD-related deoxyribonuclease; KEGG: app:CAP2UW1_0928 TatD-related deoxyribonuclease YP_003522967.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nmu:Nmul_A1959 zinc-containing alcohol dehydrogenase superfamily protein YP_003522968.1 TIGRFAM: chorismate synthase; KEGG: nmu:Nmul_A1958 chorismate synthase; PFAM: chorismate synthase YP_003522969.1 KEGG: rde:RD1_2931 glycine betaine transporter, permease protein YP_003522970.1 manually curated; KEGG: nha:Nham_0647 hypothetical protein YP_003522971.1 PFAM: glycosyl transferase family 39; KEGG: dfe:Dfer_1293 glycosyl transferase family 39 YP_003522972.1 KEGG: gme:Gmet_2381 transmembrane protein YP_003522973.1 PFAM: peptidase M48 Ste24p; KEGG: tbd:Tbd_0040 hypothetical protein YP_003522974.1 manually curated; TIGRFAM: ribosomal protein L31; KEGG: tbd:Tbd_0039 50S ribosomal protein L31; PFAM: ribosomal protein L31 YP_003522975.1 manually curated; TIGRFAM: dihydroneopterin aldolase; KEGG: nmu:Nmul_A2063 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase YP_003522976.1 PFAM: protein of unknown function DUF205; KEGG: rso:RSc2546 glycerol-3-phosphate acyltransferase PlsY YP_003522977.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: mei:Msip34_2384 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003522978.1 KEGG: hor:Hore_13580 radical SAM domain protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003522979.1 PFAM: beta-ketoacyl synthase; KEGG: pna:Pnap_1371 3-oxoacyl-(acyl carrier protein) synthase I YP_003522980.1 KEGG: tbd:Tbd_2754 hypothetical protein YP_003522981.1 KEGG: bcj:BCAL0836 hypothetical protein YP_003522982.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_4188 3-ketoacyl-(acyl-carrier-protein) reductase YP_003522983.1 KEGG: azo:azo0262 hypothetical protein YP_003522984.1 KEGG: rfr:Rfer_3978 acyl carrier protein YP_003522985.1 PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_3977 beta-ketoacyl synthase YP_003522986.1 KEGG: rfr:Rfer_3976 hypothetical protein YP_003522987.1 KEGG: rfr:Rfer_3975 hypothetical protein YP_003522988.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rfr:Rfer_3974 3-oxoacyl-(acyl carrier protein) synthase III YP_003522989.1 KEGG: rfr:Rfer_3973 hypothetical protein YP_003522990.1 KEGG: rfr:Rfer_3972 hypothetical protein YP_003522991.1 PFAM: methyltransferase type 11; KEGG: tbd:Tbd_2758 demethylmenaquinone methyltransferase YP_003522992.1 KEGG: rso:RSc0433 hypothetical protein YP_003522993.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_4173 AMP-dependent synthetase and ligase YP_003522994.1 KEGG: rso:RSc0432 hypothetical protein YP_003522995.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: app:CAP2UW1_0374 lipid A biosynthesis acyltransferase YP_003522996.1 KEGG: reu:Reut_B3930 transmembrane protein YP_003522997.1 KEGG: pna:Pnap_1374 hypothetical protein YP_003522998.1 KEGG: hna:Hneap_0457 hypothetical protein YP_003522999.1 KEGG: dar:Daro_1589 hypothetical protein YP_003523001.1 KEGG: tbd:Tbd_2762 hypothetical protein YP_003523002.1 PFAM: MltA-interacting MipA family protein; KEGG: eba:ebD127 outer membrane protein YP_003523003.1 KEGG: mca:MCA1496 acyltransferase, PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003523004.1 PFAM: glycosyl transferase family 2; KEGG: azo:azo3917 glycosyltransferase YP_003523005.1 KEGG: app:CAP2UW1_0337 radical SAM domain protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003523006.1 KEGG: neu:NE2189 integron integrase; TIGRFAM: integron integrase; PFAM: integrase family protein YP_003523007.1 KEGG: glycosyl transferase, group 2 family protein; K00710 polypeptide N-acetylgalactosaminyltransferase YP_003523008.1 manually curated; KEGG: chu:CHU_0442 hypothetical protein YP_003523009.1 KEGG: eel:EUBELI_01530 type I restriction enzyme YP_003523010.1 KEGG: rpi:Rpic_1136 hypothetical protein YP_003523011.1 PFAM: protein of unknown function DUF497; KEGG: pph:Ppha_2521 hypothetical protein YP_003523012.1 KEGG: pph:Ppha_2520 hypothetical protein YP_003523013.1 KEGG: pph:Ppha_1759 addiction module component, TIGR02574 family; TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein YP_003523014.1 KEGG: gvi:glr1691 hypothetical protein YP_003523015.1 PFAM: 20S proteasome A and B subunits; KEGG: lhk:LHK_02183 ATP-dependent protease peptidase subunit YP_003523016.1 TIGRFAM: para-aminobenzoate synthase, subunit I; KEGG: mfa:Mfla_1648 aminodeoxychorismate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003523017.1 PFAM: protein of unknown function DUF82; KEGG: pzu:PHZ_c2983 hypothetical protein YP_003523018.1 KEGG: noc:Noc_0305 hypothetical protein YP_003523019.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0735 short-chain dehydrogenase/reductase SDR YP_003523020.1 KEGG: hypothetical protein; PFAM: Ankyrin; SMART: Ankyrin YP_003523021.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: mei:Msip34_1095 6-phosphogluconolactonase YP_003523022.1 KEGG: bbt:BBta_6316 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein YP_003523023.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; KEGG: noc:Noc_2062 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_003523024.1 KEGG: mea:Mex_1p1858 glucoamylase, (glucan 1,4-alpha-glucosidase); PFAM: glucodextranase N; glycoside hydrolase 15-related YP_003523025.1 KEGG: mac:MA0038 hypothetical protein YP_003523026.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: nmu:Nmul_A0050 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain YP_003523027.1 KEGG: dar:Daro_3844 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_003523028.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: tbd:Tbd_0473 guanylate kinase; PFAM: guanylate kinase YP_003523029.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: nmu:Nmul_A0065 hypothetical protein YP_003523030.1 PFAM: protein phosphatase 2C-like; KEGG: har:HEAR2127 serine/threonine specific protein phosphatase; SMART: protein phosphatase 2C domain protein YP_003523031.1 TIGRFAM: ribonuclease PH; KEGG: mmb:Mmol_0174 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003523032.1 KEGG: rso:RSc2160 deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_003523033.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: har:HEAR2124 coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM domain protein YP_003523034.1 KEGG: axoneme-associated protein mst101 ; K11275 histone H1/5 YP_003523035.1 KEGG: ppw:PputW619_4643 PsiF repeat-containing protein YP_003523036.1 TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; KEGG: lhk:LHK_00425 TrmB; PFAM: methyltransferase YP_003523037.1 PFAM: thiazole biosynthesis family protein; KEGG: nmu:Nmul_A0070 thiazole synthase YP_003523038.1 KEGG: bav:BAV0453 thiamine biosynthesis protein; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_003523039.1 TIGRFAM: Cytochrome C oxidase, cbb3-type, subunit I; KEGG: rma:Rmag_0039 Cytochrome C oxidase, cbb3-type, subunit I; PFAM: Cytochrome C oxidase subunit I YP_003523040.1 KEGG: tcx:Tcr_1964 Cytochrome C oxidase, cbb3-type, subunit II; TIGRFAM: Cytochrome C oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO YP_003523041.1 KEGG: ote:Oter_3300 multi-sensor hybrid histidine kinase YP_003523042.1 KEGG: tcx:Tcr_1963 Cytochrome C oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome C oxidase, cbb3-type, subunit III; PFAM: Cytochrome C class I YP_003523044.1 TIGRFAM: Cytochrome C oxidase accessory protein CcoG; KEGG: vok:COSY_0081 ferredoxin YP_003523045.1 PFAM: FixH family protein; KEGG: tgr:Tgr7_2995 hypothetical protein YP_003523046.1 KEGG: tcx:Tcr_1960 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein YP_003523047.1 KEGG: tcx:Tcr_1959 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type YP_003523048.1 KEGG: dar:Daro_2990 hypothetical protein YP_003523049.1 KEGG: tcx:Tcr_0164 hypothetical protein YP_003523050.1 manually curated; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: app:CAP2UW1_2134 transcriptional regulator, Crp/Fnr family; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003523051.1 KEGG: dar:Daro_1048 coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM domain protein; manually curated; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003523052.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: azo:azo0323 2-nitropropane dioxygenase YP_003523053.1 KEGG: ppd:Ppro_3760 hypothetical protein YP_003523054.1 PFAM: AsmA family protein; KEGG: mmb:Mmol_0029 AsmA family protein YP_003523055.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: mmb:Mmol_0028 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein YP_003523056.1 KEGG: XylC; endoxylanase C YP_003523057.1 KEGG: nmu:Nmul_A0080 aromatic acid decarboxylase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein YP_003523058.1 KEGG: app:CAP2UW1_4050 heptaprenyl diphosphate synthase component I; manually curated; PFAM: Heptaprenyl diphosphate synthase component I YP_003523059.1 PFAM: protein of unknown function DUF1312; KEGG: tmz:Tmz1t_0772 hypothetical protein YP_003523060.1 PFAM: conserved hypothetical protein; KEGG: nmu:Nmul_A0081 hypothetical protein YP_003523061.1 PFAM: HPr serine kinase domain protein; KEGG: nmu:Nmul_A0082 HPr kinase/phosphorylase YP_003523062.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: neu:NE0060 phosphotransferase system mannitol/fructose-specific IIA domain-containing protein YP_003523063.1 KEGG: neu:NE0061 sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_003523064.1 KEGG: azo:azo0504 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor; sigma-54 factor core-binding region YP_003523065.1 KEGG: app:CAP2UW1_4310 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523066.1 KEGG: net:Neut_2301 OstA family protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein YP_003523067.1 PFAM: protein of unknown function DUF1239; KEGG: mfa:Mfla_0139 hypothetical protein YP_003523068.1 KEGG: tbd:Tbd_0537 phosphatase KdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA YP_003523069.1 SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: app:CAP2UW1_0637 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_003523070.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: cvi:CV_3326 glutathione-regulated potassium-efflux system protein YP_003523071.1 KEGG: tbd:Tbd_0540 hypothetical protein YP_003523072.1 SMART: ATP-binding region ATPase domain protein; KEGG: tbd:Tbd_0541 hypothetical protein YP_003523073.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: protein of unknown function DUF559; helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; KEGG: dar:Daro_3426 ATP-dependent helicase HrpA; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein YP_003523074.1 TIGRFAM: malate/quinone oxidoreductase; KEGG: hch:HCH_04006 malate:quinone oxidoreductase; PFAM: malate:quinone-oxidoreductase YP_003523075.1 PFAM: beta-ketoacyl synthase; KEGG: mei:Msip34_1200 beta-ketoacyl synthase YP_003523076.1 PFAM: phosphopantetheine-binding; KEGG: pnu:Pnuc_0954 phosphopantetheine-binding YP_003523077.1 PFAM: alpha/beta hydrolase fold; KEGG: bgl:bglu_2g14160 alpha/beta hydrolase fold protein YP_003523078.1 KEGG: azo:azo3211 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase YP_003523079.1 KEGG: tbd:Tbd_0890 hypothetical protein YP_003523080.1 PFAM: patatin; KEGG: nmu:Nmul_A2472 patatin YP_003523081.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; KEGG: mei:Msip34_0652 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin protein ligase domain protein YP_003523082.1 KEGG: eba:ebA4111 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor YP_003523083.1 PFAM: sporulation domain protein; KEGG: har:HEAR2989 hypothetical protein YP_003523086.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: eba:ebA1339 2-methylthioadenine synthetase; SMART: Elongator protein 3/MiaB/NifB YP_003523087.1 PFAM: PhoH family protein; KEGG: nmu:Nmul_A2696 PhoH-like protein YP_003523088.1 PFAM: protein of unknown function UPF0054; KEGG: eba:ebA1336 hypothetical protein YP_003523089.1 KEGG: nmu:Nmul_A2698 transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein YP_003523090.1 PFAM: major facilitator superfamily MFS_1; KEGG: mei:Msip34_2774 major facilitator superfamily MFS_1 YP_003523091.1 KEGG: bav:BAV1651 ribosomal large subunit pseudouridine synthase F (pseudouridylate synthase); PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_003523092.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: hch:HCH_04884 multidrug ABC transporter YP_003523093.1 KEGG: pmy:Pmen_1780 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003523094.1 KEGG: mei:Msip34_2125 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003523095.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: mxa:MXAN_0472 GIY-YIG catalytic domain-containing protein YP_003523096.1 TIGRFAM: glycyl-tRNA synthetase, subunit alpha; KEGG: app:CAP2UW1_3699 glycyl-tRNA synthetase, subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha YP_003523097.1 TIGRFAM: glycyl-tRNA synthetase, subunit beta; KEGG: app:CAP2UW1_3700 glycyl-tRNA synthetase, subunit beta YP_003523098.1 KEGG: mfa:Mfla_0643 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003523099.1 KEGG: mfa:Mfla_0642 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003523100.1 PFAM: protein of unknown function DUF45; KEGG: nmu:Nmul_A0547 hypothetical protein YP_003523101.1 KEGG: cvi:CV_0040 frataxin-like protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein YP_003523102.1 PFAM: Frataxin family protein; KEGG: bvi:Bcep1808_6980 aspartyl protease-like protein YP_003523103.1 KEGG: mfa:Mfla_2443 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003523104.1 KEGG: pol:Bpro_1105 histone H1-like protein YP_003523105.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_1034 signal transduction protein YP_003523106.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003523107.1 TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; KEGG: azo:azo0705 magnesium transport protein; SMART: CBS domain containing protein YP_003523108.1 PFAM: Mg2 transporter protein CorA family protein; MgtE intracellular region; KEGG: dar:Daro_3905 Mg2+ transporter protein, CorA-like YP_003523109.1 KEGG: mei:Msip34_2489 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51 YP_003523110.1 KEGG: mfa:Mfla_2445 shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_003523111.1 KEGG: sml:Smlt1541 two-component system, sensor histidine kinase transcriptional regulatory protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_003523112.1 KEGG: sml:Smlt1540 two-component system, response regulator transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein YP_003523113.1 PFAM: protein of unknown function DUF1520; KEGG: dar:Daro_1386 hypothetical protein YP_003523114.1 KEGG: rpf:Rpic12D_3510 hypothetical protein YP_003523115.1 KEGG: rpf:Rpic12D_3511 hypothetical protein YP_003523116.1 KEGG: aav:Aave_0918 type II secretion system protein N YP_003523117.1 PFAM: general secretion pathway M protein; KEGG: reu:Reut_A3227 general secretion pathway M protein YP_003523118.1 PFAM: general secretion pathway L; KEGG: nmu:Nmul_A1893 general secretion pathway L YP_003523119.1 PFAM: general secretion pathway protein K; KEGG: nmu:Nmul_A1894 general secretion pathway protein K YP_003523120.1 TIGRFAM: general secretion pathway protein J; KEGG: nmu:Nmul_A1895 general secretion pathway protein J YP_003523121.1 KEGG: nmu:Nmul_A1896 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J YP_003523122.1 KEGG: bmj:BMULJ_00012 general secretion pathway protein H YP_003523123.1 KEGG: rpf:Rpic12D_3044 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_003523124.1 KEGG: cvi:CV_3812 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system F domain YP_003523125.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: nmu:Nmul_A1903 type II secretion system protein E; SMART: AAA ATPase YP_003523126.1 KEGG: nmu:Nmul_A1902 type II and III secretion system protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein YP_003523127.1 KEGG: pzu:PHZ_c0653 type II secretion system protein C YP_003523128.1 PFAM: ABC transporter; KEGG: app:CAP2UW1_4082 ABC transporter YP_003523129.1 PFAM: periplasmic solute binding protein; KEGG: app:CAP2UW1_4081 periplasmic solute binding protein YP_003523130.1 KEGG: dar:Daro_0198 hypothetical protein YP_003523132.1 KEGG: vei:Veis_4466 FAD dependent oxidoreductase YP_003523133.1 PFAM: NHL repeat containing protein; KEGG: geo:Geob_3253 NHL repeat containing protein YP_003523134.1 TIGRFAM: TonB family protein; KEGG: neu:NE1626 TonB protein YP_003523135.1 PFAM: ribonuclease II; KEGG: net:Neut_0498 ribonuclease II YP_003523136.1 KEGG: reu:Reut_A3217 calcium-binding EF-hand; PFAM: EF-Hand domain; SMART: Calcium-binding EF-hand-containing protein YP_003523137.1 PFAM: Cytochrome C class I; KEGG: dar:Daro_3321 Cytochrome C, class I YP_003523138.1 PFAM: protein of unknown function DUF28; KEGG: nmu:Nmul_A2722 hypothetical protein YP_003523139.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: mei:Msip34_2406 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003523140.1 PFAM: UbiA prenyltransferase; KEGG: pna:Pnap_1242 UbiA prenyltransferase YP_003523141.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; helix-hairpin-helix motif; KEGG: azo:azo0602 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003523142.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase RuvB domain; ATPase AAA; KEGG: rso:RSc0500 Holliday junction DNA helicase RuvB; SMART: AAA ATPase YP_003523143.1 KEGG: nmu:Nmul_A2718 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein YP_003523144.1 KEGG: har:HEAR2404 inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNA; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_003523145.1 manually curated; TIGRFAM: protein TolR; KEGG: nmu:Nmul_A2716 biopolymer transport protein ExbD/TolR; PFAM: biopolymer transport protein ExbD/TolR YP_003523146.1 TIGRFAM: protein TolA; KEGG: neu:NE0217 hypothetical protein YP_003523147.1 KEGG: nmu:Nmul_A2714 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller YP_003523148.1 KEGG: azo:azo0416 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein YP_003523149.1 TIGRFAM: tol-pal system protein YbgF; KEGG: mms:mma_2469 Tol-Pal cell envelope complex subunit YbgF YP_003523150.1 PFAM: radical SAM domain protein; KEGG: nmu:Nmul_A2711 radical SAM family protein YP_003523151.1 KEGG: mei:Msip34_2395 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like YP_003523152.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003523153.1 TIGRFAM: succinyl-CoA synthetase, subunit beta; KEGG: har:HEAR0343 succinyl-CoA synthetase, subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003523154.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; KEGG: har:HEAR0344 succinyl-CoA synthetase subunit alpha; SMART: CoA-binding domain protein YP_003523155.1 PFAM: integral membrane protein TerC; KEGG: app:CAP2UW1_3848 integral membrane protein TerC YP_003523156.1 PFAM: UspA domain protein; KEGG: neu:NE2292 universal stress protein YP_003523157.1 PFAM: serine/threonine-protein kinase-like domain; CHASE2 domain protein; KEGG: rfr:Rfer_3942 serine/threonine protein kinase with CHASE2 sensor YP_003523158.1 PFAM: protein phosphatase 2C-like; KEGG: dar:Daro_3360 protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_003523159.1 KEGG: dar:Daro_3359 forkhead-associated; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_003523160.1 KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003523161.1 SMART: beta-lactamase domain protein; KEGG: app:CAP2UW1_0661 beta-lactamase domain protein YP_003523162.1 KEGG: mmb:Mmol_0609 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; Rhodanese domain protein; SMART: cyclic nucleotide-binding; Rhodanese domain protein YP_003523163.1 KEGG: net:Neut_2128 GAF sensor protein; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; GAF domain protein; SMART: GAF domain protein; AAA ATPase YP_003523164.1 KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region YP_003523165.1 KEGG: har:HEAR2619 fimbrial protein precursor (pilin) (strain P1) YP_003523166.1 PFAM: hypothetical protein; KEGG: tbd:Tbd_2199 hypothetical protein YP_003523167.1 PFAM: flagellar transcriptional activator; KEGG: mfa:Mfla_1943 transcriptional activator FlhD YP_003523168.1 PFAM: flagellar transcriptional activator FlhC; KEGG: mms:mma_2101 transcriptional activator FlhC YP_003523169.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: tbd:Tbd_1243 flagellar motor protein MotA YP_003523170.1 PFAM: OmpA/MotB domain protein; KEGG: mms:mma_2098 flagellar motor protein MotB YP_003523171.1 KEGG: cvi:CV_2852 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003523172.1 KEGG: dar:Daro_1902 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003523173.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: csa:Csal_2022 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein YP_003523174.1 KEGG: app:CAP2UW1_3839 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver YP_003523175.1 KEGG: azo:azo1459 chemotaxis protein CheV-like; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver YP_003523176.1 KEGG: dze:Dd1591_1545 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003523177.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: azo:azo1461 chemotaxis regulator CheZ YP_003523178.1 KEGG: azo:azo1462 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein YP_003523179.1 KEGG: app:CAP2UW1_2453 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003523180.1 PFAM: MCP methyltransferase CheR-type; KEGG: azo:azo1455 chemotaxis protein methyltransferase; SMART: MCP methyltransferase CheR-type YP_003523181.1 KEGG: neu:NE1859 chemotaxis-specific methylesterase; PFAM: CheB methylesterase YP_003523182.1 KEGG: nmu:Nmul_A1309 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_003523183.1 KEGG: nmu:Nmul_A1310 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_003523184.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: har:HEAR1312 flagellar biosynthesis regulator FlhF; SMART: AAA ATPase YP_003523185.1 KEGG: neu:NE2490 MinD-related protein YP_003523186.1 KEGG: azo:azo1107 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_003523187.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: azo:azo1108 flagellar motor protein YP_003523188.1 PFAM: OmpA/MotB domain protein; KEGG: nmu:Nmul_A1315 flagellar motor protein MotD YP_003523189.1 PFAM: FlgN family protein; KEGG: nmu:Nmul_A1316 FlgN YP_003523190.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: tmz:Tmz1t_2926 anti-sigma-28 factor, FlgM YP_003523191.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mei:Msip34_0780 flagella basal body P-ring formation protein FlgA; SMART: SAF domain protein YP_003523192.1 KEGG: mms:mma_1418 FlgB flagellar basal body protein; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_003523193.1 KEGG: tbd:Tbd_1636 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003523194.1 PFAM: flagellar hook capping protein; KEGG: tbd:Tbd_1635 flagellar basal body rod modification protein YP_003523195.1 KEGG: tbd:Tbd_1634 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003523196.1 KEGG: mmb:Mmol_0946 flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003523197.1 KEGG: mmb:Mmol_0945 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003523198.1 PFAM: flagellar L-ring protein; KEGG: app:CAP2UW1_3818 flagellar L-ring protein YP_003523199.1 PFAM: flagellar P-ring protein; KEGG: azo:azo2733 flagellar basal body P-ring protein YP_003523200.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: tbd:Tbd_1629 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_003523201.1 KEGG: nmu:Nmul_A1330 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003523202.1 KEGG: mms:mma_1428 FlgL flagellar hook-associated proteins 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein YP_003523203.1 KEGG: gsu:GSU1547 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat YP_003523204.1 PFAM: ABC transporter; KEGG: cpc:Cpar_1860 ABC transporter YP_003523205.1 KEGG: ttr:Tter_2251 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523206.1 PFAM: protein of unknown function DUF2252; KEGG: bxe:Bxe_B2085 hypothetical protein YP_003523207.1 KEGG: cvi:CV_1368 hypothetical protein; PFAM: methyltransferase type 12; hypothetical protein; SMART: Tetratricopeptide repeat YP_003523208.1 PFAM: sterol-binding domain protein; KEGG: app:CAP2UW1_0991 hypothetical protein YP_003523209.1 PFAM: peptidase U32; KEGG: dar:Daro_0108 peptidase U32 YP_003523210.1 PFAM: peptidase U32; KEGG: app:CAP2UW1_0989 peptidase U32 YP_003523211.1 KEGG: pol:Bpro_2469 response regulator receiver/diguanylate phosphodiesterase; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver YP_003523212.1 KEGG: pin:Ping_2140 fused multi-sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; Hpt domain protein YP_003523213.1 KEGG: mms:mma_1429 FliR component of the flagellar biosynthesis pathway; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_003523214.1 KEGG: mei:Msip34_0767 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3 YP_003523215.1 KEGG: nmu:Nmul_A1355 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_003523216.1 KEGG: har:HEAR1886 FliO (partial); TIGRFAM: flagellar biosynthetic protein FliO; PFAM: flagellar biosynthesis protein FliO YP_003523217.1 KEGG: tbd:Tbd_1608 flagellar motor switch/type III secretory pathway protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein YP_003523218.1 KEGG: dar:Daro_0766 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_003523219.1 PFAM: flagellar basal body-associated protein FliL; KEGG: rso:RSp0379 flagellar basal body-associated protein FliL YP_003523220.1 PFAM: flagellar hook-length control protein; KEGG: bpd:BURPS668_0217 flagellar hook-length control protein FliK YP_003523221.1 KEGG: dar:Daro_0769 flagellar biosynthesis chaperone FliJ-like protein; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein YP_003523222.1 SMART: AAA ATPase; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; KEGG: neu:NE2086 flagellar ATP synthase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region YP_003523223.1 PFAM: Flagellar assembly protein FliH/type III secretion system HrpE; KEGG: tbd:Tbd_1602 flagellar assembly protein FliH YP_003523224.1 KEGG: mei:Msip34_0757 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_003523225.1 KEGG: nmu:Nmul_A1345 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein YP_003523226.1 KEGG: mmb:Mmol_0926 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_003523228.1 KEGG: bph:Bphy_2997 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat YP_003523229.1 KEGG: dat:HRM2_00990 two domain fusion protein (N:methyltransferase, C:TPR-repeat family protein); PFAM: methyltransferase type 12; hypothetical protein; methyltransferase type 11; SMART: Tetratricopeptide repeat; MCP methyltransferase CheR-type YP_003523230.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_5236 DegT/DnrJ/EryC1/StrS aminotransferase YP_003523231.1 PFAM: WbqC-like family protein; KEGG: dfe:Dfer_2775 WbqC-like family protein YP_003523232.1 PFAM: methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein YP_003523233.1 KEGG: bte:BTH_I3214 transferase YP_003523234.1 TIGRFAM: methyltransferase FkbM family; KEGG: lbl:LBL_1195 hypothetical protein YP_003523235.1 KEGG: bte:BTH_I3215 hypothetical protein YP_003523236.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: ppw:PputW619_3748 hypothetical protein YP_003523237.1 KEGG: ajs:Ajs_0556 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2 YP_003523238.1 KEGG: bph:Bphy_2998 hypothetical protein YP_003523239.1 KEGG: bac:BamMC406_0165 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat YP_003523240.1 PFAM: YcgR family protein; type IV pilus assembly PilZ; KEGG: lhk:LHK_00181 YcgR YP_003523241.1 PFAM: type III secretion exporter; KEGG: app:CAP2UW1_0921 flagellar biosynthetic protein YP_003523242.1 KEGG: neu:NE2077 hypothetical protein YP_003523243.1 PFAM: flagellar export chaperone; KEGG: har:HEAR1870 flagellar synthesis (flagellar regulon) YP_003523244.1 KEGG: mms:mma_1447 FliS flagellar protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_003523245.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: tbd:Tbd_1592 flagellar hook-associated protein 2 YP_003523246.1 PFAM: flagellar protein FlaG protein; KEGG: tbd:Tbd_1591 flagellar protein FlaG YP_003523247.1 PFAM: flagellin domain protein; KEGG: lhk:LHK_02705 flagellin domain protein YP_003523248.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF; SMART: GGDEF domain containing protein YP_003523249.1 KEGG: har:HEAR1863 LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003523250.1 SMART: ATP-binding region ATPase domain protein; manually curated; KEGG: mms:mma_1453 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein YP_003523251.1 KEGG: nmu:Nmul_A0818 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_003523252.1 KEGG: mmb:Mmol_0314 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_003523253.1 KEGG: tbd:Tbd_1710 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_003523254.1 KEGG: mei:Msip34_0271 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003523255.1 KEGG: dar:Daro_3379 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_003523256.1 KEGG: neu:NE0642 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase YP_003523257.1 KEGG: tbd:Tbd_1706 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_003523258.1 PFAM: histidine triad (HIT) protein; KEGG: nmu:Nmul_A0811 histidine triad (HIT) protein YP_003523259.1 KEGG: pnu:Pnuc_0116 twin arginine-targeting protein translocase; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003523260.1 KEGG: app:CAP2UW1_4043 twin-arginine translocation protein, TatB subunit; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003523261.1 KEGG: tbd:Tbd_1702 sec-independent protein translocase TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_003523262.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: nmu:Nmul_A0807 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein YP_003523263.1 PFAM: protein of unknown function DUF34; KEGG: app:CAP2UW1_4047 protein of unknown function DUF34 YP_003523264.1 PFAM: MgtC/SapB transporter; KEGG: tau:Tola_2686 MgtC/SapB transporter YP_003523265.1 KEGG: ppu:PP_4514 patatin YP_003523266.1 manually curated; KEGG: rpf:Rpic12D_4272 hypothetical protein YP_003523267.1 KEGG: gme:Gmet_1809 hypothetical protein YP_003523268.1 KEGG: gur:Gura_2777 nitrate reductase; manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region YP_003523269.1 KEGG: gme:Gmet_1811 4Fe-4S ferredoxin, iron-sulfur binding protein YP_003523270.1 PFAM: polysulphide reductase NrfD; KEGG: gme:Gmet_1812 polysulphide reductase, NrfD YP_003523271.1 KEGG: tro:trd_0465 hypothetical protein YP_003523272.1 KEGG: gme:Gmet_1814 hypothetical protein YP_003523273.1 KEGG: dat:HRM2_15130 MopC YP_003523274.1 PFAM: glutathione S-transferase domain; KEGG: nmu:Nmul_A1002 glutathione S-transferase-like protein YP_003523275.1 PFAM: stringent starvation protein B; KEGG: tbd:Tbd_1829 ClpXP protease specificity-enhancing factor YP_003523276.1 KEGG: app:CAP2UW1_4157 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_003523277.1 KEGG: nmu:Nmul_A0004 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_003523278.1 KEGG: mei:Msip34_0833 ATP-cone domain protein; manually curated; PFAM: ATP-cone domain protein YP_003523279.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: eba:ebA1045 riboflavin biosynthesis bifunctional RibD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003523280.1 TIGRFAM: riboflavin synthase, subunit alpha; KEGG: azo:azo0320 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_003523281.1 KEGG: tbd:Tbd_2190 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003523282.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: mei:Msip34_2257 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003523283.1 KEGG: lch:Lcho_2937 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_003523284.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: tbd:Tbd_2193 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003523285.1 PFAM: phosphatidylglycerophosphatase A; KEGG: eba:ebA3402 phosphatidyl-glycerophosphatase hydrolase YP_003523286.1 KEGG: mca:MCA2942 prophage MuMc02, nuclease, PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein) YP_003523287.1 KEGG: dar:Daro_0694 regulatory protein, MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003523288.1 KEGG: mpt:Mpe_A1927 SPFH domain-containing protein/band 7 family protein YP_003523289.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dar:Daro_0361 NADH:flavin oxidoreductase/NADH oxidase YP_003523290.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: dar:Daro_3099 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003523291.1 KEGG: bxe:Bxe_A2479 cytoplasmic protein YP_003523292.1 PFAM: protein of unknown function DUF45; KEGG: tmz:Tmz1t_0062 protein of unknown function DUF45 YP_003523293.1 KEGG: hch:HCH_03853 hypothetical protein YP_003523294.1 KEGG: tmz:Tmz1t_2467 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003523295.1 KEGG: rso:RSc0591 hypothetical protein YP_003523296.1 KEGG: mmb:Mmol_0506 UDP-2,3-diacylglucosamine hydrolase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase YP_003523297.1 KEGG: har:HEAR1283 peptidyl-prolyl cis-trans isomerase B (rotamase B); manually curated; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003523298.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dar:Daro_0917 ErfK/YbiS/YcfS/YnhG YP_003523299.1 KEGG: dar:Daro_0918 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat YP_003523300.1 KEGG: lhk:LHK_01404 Syq; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_003523301.1 KEGG: tbd:Tbd_1218 transmembrane protein YP_003523302.1 SMART: Cysteinyl-tRNA synthetase class Ia DALR; TIGRFAM: cysteinyl-tRNA synthetase; KEGG: tmz:Tmz1t_3046 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_003523303.1 KEGG: syn:slr1767 hypothetical protein YP_003523304.1 PFAM: protein of unknown function DUF433; KEGG: cph:Cpha266_2195 hypothetical protein YP_003523305.1 KEGG: app:CAP2UW1_0632 hypothetical protein YP_003523306.1 KEGG: mmb:Mmol_0249 hypothetical protein YP_003523307.1 KEGG: dar:Daro_3411 hypothetical protein YP_003523308.1 KEGG: mei:Msip34_0084 hypothetical protein YP_003523309.1 KEGG: mfa:Mfla_0080 hypothetical protein YP_003523310.1 PFAM: type II secretion system F domain; KEGG: dar:Daro_3408 type II secretion system protein YP_003523311.1 KEGG: app:CAP2UW1_0626 type II secretion system protein E; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: AAA ATPase YP_003523312.1 PFAM: hypothetical protein; hypothetical protein; KEGG: app:CAP2UW1_0625 tetratricopeptide TPR_2 repeat protein YP_003523313.1 KEGG: dar:Daro_3405 type II and III secretion system protein; TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein YP_003523314.1 KEGG: app:CAP2UW1_0623 sporulation domain protein; PFAM: sporulation domain protein; SMART: AAA ATPase YP_003523315.1 manually curated; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: mfa:Mfla_0074 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase YP_003523316.1 KEGG: tbd:Tbd_1900 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523317.1 PFAM: protein of unknown function DUF140; KEGG: tbd:Tbd_1899 hypothetical protein YP_003523318.1 PFAM: mammalian cell entry related domain protein; KEGG: nmu:Nmul_A2747 hypothetical protein YP_003523319.1 PFAM: toluene tolerance family protein; KEGG: net:Neut_0854 toluene tolerance family protein YP_003523320.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: nmu:Nmul_A2745 anti-sigma-factor antagonist domain-containing protein YP_003523321.1 KEGG: tbd:Tbd_1891 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003523322.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: mfa:Mfla_0247 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region YP_003523323.1 TIGRFAM: histidinol dehydrogenase; KEGG: app:CAP2UW1_4033 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_003523324.1 manually curated; TIGRFAM: ribosomal protein L28; KEGG: mei:Msip34_0335 ribosomal protein L28; PFAM: ribosomal protein L28 YP_003523325.1 KEGG: dar:Daro_3144 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_003523326.1 KEGG: cps:CPS_2443 lipoprotein YP_003523327.1 KEGG: nmu:Nmul_A0232 hypothetical protein YP_003523328.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mei:Msip34_1565 protein of unknown function DUF6 transmembrane YP_003523329.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nmu:Nmul_A0233 Rieske (2Fe-2S) region YP_003523330.1 KEGG: nmu:Nmul_A0234 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit YP_003523331.1 PFAM: polyprenyl synthetase; KEGG: nmu:Nmul_A0235 polyprenyl synthetase YP_003523332.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase central region; transketolase domain protein; KEGG: net:Neut_1501 1-deoxy-D-xylulose-5-phosphate synthase; SMART: transketolase central region YP_003523333.1 PFAM: protein of unknown function DUF198; KEGG: neu:NE1163 GTP cyclohydrolase YP_003523334.1 KEGG: dar:Daro_1127 heat shock protein 90; PFAM: ATP-binding region ATPase domain protein; Heat shock protein Hsp90-like; SMART: ATP-binding region ATPase domain protein YP_003523335.1 PFAM: glutamine amidotransferase class-I; KEGG: mmb:Mmol_0599 glutamine amidotransferase class-I YP_003523336.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bur:Bcep18194_A4212 4Fe-4S ferredoxin YP_003523337.1 KEGG: har:HEAR0707 hypothetical protein YP_003523338.1 KEGG: tbd:Tbd_0033 DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase YP_003523339.1 KEGG: avn:Avin_47920 catalase protein; PFAM: catalase related subgroup YP_003523340.1 KEGG: tbd:Tbd_0033 DNA helicase/exodeoxyribonuclease V, subunit A YP_003523341.1 KEGG: eci:UTI89_C2305 glycosyltransferase YP_003523342.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfu:Sfum_0600 GCN5-related N-acetyltransferase YP_003523343.1 KEGG: vex:VEA_003422 hypothetical protein YP_003523344.1 manually curated; PFAM: radical SAM domain protein; KEGG: mfa:Mfla_1266 radical SAM family protein; SMART: Elongator protein 3/MiaB/NifB YP_003523346.1 KEGG: neu:NE1961 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003523347.1 PFAM: ABC transporter; KEGG: cps:CPS_1067 ABC transporter, permease protein YP_003523348.1 KEGG: asa:ASA_1248 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523349.1 TIGRFAM: lipoate-protein ligase B; KEGG: dar:Daro_0288 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_003523350.1 PFAM: protein of unknown function DUF493; KEGG: net:Neut_0759 hypothetical protein YP_003523351.1 PFAM: aminotransferase class IV; KEGG: nmu:Nmul_A1990 aminotransferase, class IV YP_003523352.1 KEGG: net:Neut_0761 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_003523353.1 KEGG: mmb:Mmol_1255 methyl-accepting chemotaxis sensory transducer YP_003523354.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pmy:Pmen_4398 signal transduction protein YP_003523355.1 KEGG: mei:Msip34_0534 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver YP_003523356.1 KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003523357.1 KEGG: lhk:LHK_01081 NosA protein precursor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_003523358.1 PFAM: protein of unknown function DUF461; KEGG: app:CAP2UW1_1795 protein of unknown function DUF461 YP_003523359.1 PFAM: protein of unknown function DUF461; KEGG: tbd:Tbd_2687 hypothetical protein YP_003523360.1 PFAM: heat shock protein Hsp20; KEGG: tbd:Tbd_2312 heat shock protein HSP20 YP_003523361.1 TIGRFAM: acetylglutamate kinase; KEGG: mmb:Mmol_1989 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003523362.1 KEGG: tmz:Tmz1t_1534 pyrimidine 5'-nucleotidase; TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003523363.1 PFAM: regulatory protein TetR; KEGG: dar:Daro_0627 nucleoid occlusion protein YP_003523364.1 PFAM: DAHP synthetase I/KDSA; KEGG: nmu:Nmul_A0091 3-deoxy-7-phosphoheptulonate synthase YP_003523365.1 KEGG: tbd:Tbd_1986 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003523366.1 KEGG: histone H1 ; K11275 histone H1/5 YP_003523367.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mei:Msip34_0989 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003523368.1 KEGG: nmu:Nmul_A0452 ribonuclease BN, TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_003523369.1 PFAM: conserved hypothetical protein; KEGG: mei:Msip34_2317 hypothetical protein YP_003523370.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mei:Msip34_2316 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003523371.1 PFAM: Lytic transglycosylase catalytic; KEGG: mei:Msip34_2278 lytic transglycosylase catalytic YP_003523372.1 KEGG: nmu:Nmul_A0450 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein YP_003523373.1 PFAM: NUDIX hydrolase; KEGG: mei:Msip34_0605 NUDIX hydrolase YP_003523374.1 KEGG: nmu:Nmul_A2064 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_003523375.1 PFAM: PEGA domain protein; KEGG: tga:TGAM_1504 hypothetical protein YP_003523376.1 KEGG: nmu:Nmul_A2136 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003523377.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: mfa:Mfla_0314 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003523378.1 KEGG: mfa:Mfla_0315 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003523379.1 KEGG: mei:Msip34_0299 translation elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein YP_003523380.1 KEGG: mei:Msip34_0288 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_003523381.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; KEGG: eba:ebA3811 transcription antitermination protein NusG; SMART: NGN domain protein; KOW domain protein YP_003523382.1 TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11-like; KEGG: tmz:Tmz1t_3349 ribosomal protein L11; SMART: ribosomal protein L11 YP_003523383.1 KEGG: nmu:Nmul_A0756 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_003523384.1 PFAM: ribosomal protein L10; KEGG: cti:RALTA_A2961 50S ribosomal protein L10 YP_003523385.1 KEGG: dia:Dtpsy_3247 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 YP_003523386.1 TIGRFAM: DNA-directed RNA polymerase subunit beta; KEGG: nmu:Nmul_A0759 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2 domain 7 YP_003523387.1 TIGRFAM: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 3; KEGG: nmu:Nmul_A0760 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_003523388.1 KEGG: mmb:Mmol_0340 ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_003523389.1 KEGG: cvi:CV_4190 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_003523390.1 KEGG: eba:ebA3824 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein YP_003523391.1 KEGG: mei:Msip34_0299 translation elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein YP_003523392.1 KEGG: nmu:Nmul_A0766 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_003523393.1 KEGG: rpf:Rpic12D_2950 ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_003523394.1 PFAM: ribosomal protein L4/L1e; KEGG: azo:azo3416 50S ribosomal protein L4 YP_003523395.1 PFAM: ribosomal protein L25/L23; KEGG: tmz:Tmz1t_3336 ribosomal protein L25/L23 YP_003523396.1 KEGG: mfa:Mfla_0282 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_003523397.1 KEGG: cvi:CV_4182 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_003523398.1 KEGG: bpt:Bpet4947 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_003523399.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; ribosomal protein S3 domain; KH type 2 domain protein; KEGG: mei:Msip34_0307 ribosomal protein S3; SMART: KH domain protein YP_003523400.1 KEGG: bte:BTH_I3061 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L10e/L16 YP_003523401.1 KEGG: dar:Daro_0327 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_003523402.1 KEGG: lhk:LHK_00262 RpsQ; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_003523403.1 KEGG: mei:Msip34_0312 ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_003523404.1 KEGG: mmw:Mmwyl1_4265 ribosomal protein L24; TIGRFAM: ribosomal protein L24; SMART: KOW domain protein YP_003523405.1 PFAM: ribosomal protein L5; KEGG: tbd:Tbd_0417 50S ribosomal protein L5 YP_003523406.1 PFAM: ribosomal protein S14; KEGG: mfa:Mfla_0292 30S ribosomal protein S14 YP_003523407.1 PFAM: ribosomal protein S8; KEGG: dar:Daro_0333 30S ribosomal protein S8 YP_003523408.1 KEGG: eba:ebA3841 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain YP_003523409.1 KEGG: mfa:Mfla_0295 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_003523410.1 KEGG: nmu:Nmul_A0784 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5 YP_003523411.1 KEGG: tmz:Tmz1t_3320 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30 YP_003523412.1 KEGG: mei:Msip34_0321 ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15 YP_003523413.1 KEGG: nmu:Nmul_A0787 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein YP_003523414.1 KEGG: rso:RSc2998 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_003523415.1 KEGG: amc:MADE_00959 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36 YP_003523416.1 KEGG: dar:Daro_0342 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_003523417.1 KEGG: mei:Msip34_0326 ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_003523418.1 TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; KEGG: tbd:Tbd_0429 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003523419.1 TIGRFAM: DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase subunit alpha domain protein; RNA polymerase dimerisation; KEGG: eba:ebA3853 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003523420.1 KEGG: azo:azo3390 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_003523421.1 KEGG: eba:ebD76 hypothetical protein YP_003523422.1 KEGG: eba:ebD75 hypothetical protein YP_003523423.1 KEGG: tye:THEYE_A0566 SCP-like extracellular protein; PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein YP_003523424.1 KEGG: nmu:Nmul_A2229 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_003523425.1 PFAM: major facilitator superfamily MFS_1; KEGG: nmu:Nmul_A2228 major facilitator transporter YP_003523426.1 KEGG: nmu:Nmul_A2227 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003523427.1 KEGG: tgr:Tgr7_0682 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein YP_003523428.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1929 4Fe-4S ferredoxin, iron-sulfur binding YP_003523429.1 KEGG: rpt:Rpal_1209 hypothetical protein YP_003523430.1 KEGG: azo:azo0554 HesB/YadR/YfhF family protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003523431.1 KEGG: azo:azo0553 nitrogen fixation protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein YP_003523432.1 TIGRFAM: cysteine desulfurase NifS; KEGG: ttu:TERTU_1589 cysteine desulfurase NifS; PFAM: aminotransferase class V YP_003523433.1 KEGG: dar:Daro_1398 pyruvate carboxyltransferase; TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase YP_003523434.1 manually curated; TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA1830 serine acetyltransferase YP_003523435.1 KEGG: avn:Avin_01660 hypothetical protein YP_003523436.1 PFAM: nitrogen fixation protein NifW; KEGG: avn:Avin_01670 nitrogen fixation protein NifW YP_003523437.1 PFAM: NifZ family protein; KEGG: azo:azo0547 nitrogen fixation protein YP_003523438.1 KEGG: app:CAP2UW1_4379 nitrogen fixation protein NifM; TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase YP_003523439.1 PFAM: HicB family protein; KEGG: pfs:PFLU2541 hypothetical protein YP_003523440.1 manually curated; KEGG: hdu:HD0911 HicA protein YP_003523441.1 KEGG: dat:HRM2_33280 TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003523442.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter YP_003523443.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: dat:HRM2_33300 TRAP-type C4-dicarboxylate transport system, periplasmic component YP_003523444.1 KEGG: abo:ABO_0687 hypothetical protein YP_003523445.1 KEGG: cvi:CV_3729 flagellar protein YP_003523446.1 KEGG: Gm3773; predicted gene 3773 YP_003523447.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rfr:Rfer_0201 protein of unknown function DUF224, cysteine-rich protein YP_003523448.1 PFAM: protein of unknown function DUF162; KEGG: rfr:Rfer_0200 hypothetical protein YP_003523449.1 KEGG: rfr:Rfer_0199 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523450.1 KEGG: noc:Noc_2128 aminotransferase, class V; PFAM: aminotransferase class V YP_003523451.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hch:HCH_05804 glycolate oxidase iron-sulfur subunit YP_003523452.1 PFAM: FAD linked oxidase domain protein; KEGG: afe:Lferr_1361 glycolate oxidase FAD binding subunit YP_003523453.1 PFAM: FAD linked oxidase domain protein; KEGG: noc:Noc_0495 D-lactate dehydrogenase (cytochrome) YP_003523454.1 PFAM: pirin; KEGG: ajs:Ajs_1985 pirin domain-containing protein YP_003523455.1 KEGG: dfe:Dfer_4798 histone H1/H5 family protein, HCT subfamily YP_003523456.1 KEGG: mei:Msip34_1607 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein YP_003523457.1 PFAM: peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD YP_003523458.1 TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: dar:Daro_1447 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1 YP_003523459.1 PFAM: NifQ family protein; KEGG: hha:Hhal_0280 NifQ family protein YP_003523460.1 PFAM: ferredoxin; KEGG: azo:azo0527 ferredoxin IV YP_003523461.1 KEGG: cyt:cce_0545 nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related YP_003523462.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: app:CAP2UW1_4423 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523463.1 KEGG: azo:azo0523 nitrogen fixation protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein YP_003523464.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo1248 NifY protein YP_003523465.1 KEGG: azo:azo1249 hypothetical protein YP_003523466.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: azo:azo0062 hypothetical protein YP_003523467.1 KEGG: azo:azo0637 hypothetical protein YP_003523468.1 KEGG: mca:MCA3087 hypothetical protein YP_003523469.1 KEGG: mca:MCA3085 BatB protein, PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_003523470.1 KEGG: reh:H16_A1606 hypothetical protein YP_003523471.1 PFAM: protein of unknown function DUF58; KEGG: avn:Avin_18820 hypothetical protein YP_003523472.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: pat:Patl_1662 ATPase YP_003523473.1 KEGG: hch:HCH_04031 hypothetical protein YP_003523474.1 KEGG: bch:Bcen2424_5761 hypothetical protein YP_003523475.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abc:ACICU_00863 site-specific DNA methylase YP_003523476.1 SMART: AAA ATPase; KEGG: abc:ACICU_00862 ABC oligo/dipeptide transport, ATP-binding protein YP_003523477.1 KEGG: mpt:Mpe_B0625 hypothetical protein YP_003523478.1 KEGG: ote:Oter_2888 amidohydrolase 2 YP_003523479.1 KEGG: azo:azo2117 hypothetical protein YP_003523480.1 PFAM: protein of unknown function nitrogen fixation; KEGG: avn:Avin_01570 hypothetical protein YP_003523481.1 TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; KEGG: azo:azo0519 nif-specific regulatory protein; SMART: GAF domain protein; AAA ATPase YP_003523482.1 TIGRFAM: nitrogen fixation negative regulator NifL; PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: azo:azo0518 nitrogen fixation regulatory protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003523483.1 KEGG: app:CAP2UW1_4393 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003523484.1 KEGG: app:CAP2UW1_4392 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523485.1 KEGG: azo:azo0515 electronen transport complex protein RnfC; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Soluble ligand binding domain YP_003523486.1 KEGG: azo:azo0514 electron transport complex protein RnfD; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003523487.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: app:CAP2UW1_4389 electron transport complex, RnfABCDGE type, G subunit; SMART: FMN-binding domain protein YP_003523488.1 KEGG: app:CAP2UW1_4388 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003523489.1 PFAM: protein of unknown function UPF0125; KEGG: app:CAP2UW1_4387 protein of unknown function UPF0125 YP_003523490.1 PFAM: sodium/hydrogen exchanger; KEGG: cja:CJA_2911 pH regulated Na(+)/H(+) antiporter YP_003523491.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003523492.1 KEGG: lch:Lcho_1543 sporulation domain-containing protein YP_003523493.1 KEGG: lch:Lcho_1542 Cytochrome C family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein YP_003523494.1 KEGG: mca:MCA2189 Cytochrome C family protein YP_003523495.1 KEGG: lch:Lcho_1540 hypothetical protein YP_003523496.1 PFAM: cation efflux protein; KEGG: mei:Msip34_1326 cation efflux protein YP_003523497.1 KEGG: eba:ebA177 hypothetical protein YP_003523498.1 KEGG: azo:azo1111 hemerythrin-like protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003523499.1 KEGG: bte:BTH_I0341 hypothetical protein; manually curated; PFAM: heat shock protein DnaJ domain protein YP_003523500.1 KEGG: pmc:P9515_00661 SMC ATPase superfamily chromosome segregation protein YP_003523501.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: azo:azo0535 hemerythrin-like protein YP_003523502.1 KEGG: azo:azo0536 hypothetical protein YP_003523503.1 SMART: beta-lactamase domain protein; KEGG: net:Neut_2129 cyclic-AMP phosphodiesterase YP_003523504.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; GGDEF domain containing protein; KEGG: mei:Msip34_2729 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003523505.1 KEGG: dar:Daro_1416 hypothetical protein; PFAM: dinitrogenase reductase ADP-ribosyltransferase YP_003523506.1 TIGRFAM: nitrogenase iron protein; KEGG: dar:Daro_1415 nitrogenase iron protein subunit NifH; PFAM: NifH/frxC-family protein YP_003523507.1 TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: app:CAP2UW1_4448 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003523508.1 TIGRFAM: nitrogenase molybdenum-iron protein beta chain; KEGG: psa:PST_1328 MoFe protein, subunit beta; PFAM: oxidoreductase/nitrogenase component 1 YP_003523509.1 KEGG: app:CAP2UW1_4450 nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein YP_003523510.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1405 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003523511.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0543 NifY protein YP_003523512.1 KEGG: azo:azo0544 hypothetical protein YP_003523513.1 KEGG: azo:azo3506 hypothetical protein YP_003523514.1 KEGG: rfr:Rfer_2293 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003523515.1 PFAM: O-methyltransferase family 3; KEGG: noc:Noc_1264 O-methyltransferase family protein YP_003523516.1 KEGG: ECT2; ECT2; protein binding YP_003523517.1 KEGG: zmo:ZMO0163 hypothetical protein YP_003523518.1 KEGG: sds:SDEG_1999 integral membrane protein YP_003523519.1 manually curated; KEGG: sfu:Sfum_1249 hypothetical protein YP_003523520.1 KEGG: mca:MCA1377 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003523521.1 PFAM: TOBE domain protein; regulatory protein LysR; KEGG: mms:mma_3659 molybdenum transport regulatory protein ModE YP_003523522.1 KEGG: azo:azo3839 molybdate transport system, periplasmic-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003523523.1 KEGG: dia:Dtpsy_2471 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003523524.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; KEGG: azo:azo3837 molybdenum transport system, ATP-binding protein; SMART: AAA ATPase YP_003523525.1 PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_3031 GCN5-related N-acetyltransferase YP_003523526.1 PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein YP_003523527.1 KEGG: app:CAP2UW1_4453 hypothetical protein YP_003523528.1 KEGG: app:CAP2UW1_4373 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_003523529.1 TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: dar:Daro_1505 nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: oxidoreductase/nitrogenase component 1 YP_003523530.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0560 NifX protein YP_003523531.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: hna:Hneap_0704 positive regulator of sigma E, RseC/MucC YP_003523532.1 KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269 YP_003523533.1 PFAM: protein of unknown function DUF683; KEGG: dar:Daro_1509 hypothetical protein YP_003523534.1 KEGG: azo:azo0556 ferredoxin; TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523535.1 KEGG: mca:MCA0256 ferredoxin, 2Fe-2S YP_003523536.1 KEGG: psa:PST_1341 hypothetical protein YP_003523537.1 KEGG: dar:Daro_1484 hypothetical protein YP_003523538.1 KEGG: bbt:BBta_2171 hypothetical protein YP_003523539.1 KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Ankyrin; SMART: Ankyrin YP_003523540.1 KEGG: bid:Bind_1223 hypothetical protein YP_003523541.1 KEGG: mms:mma_1685 hypothetical protein YP_003523542.1 PFAM: conserved hypothetical protein; KEGG: bur:Bcep18194_B2943 hypothetical protein YP_003523543.1 PFAM: sodium/hydrogen exchanger; KEGG: sun:SUN_0351 NhaP family Na(+)/H(+) antiporter YP_003523544.1 manually curated; KEGG: reu:Reut_C5911 hypothetical protein YP_003523545.1 KEGG: similar to transposase; K04257 olfactory receptor YP_003523546.1 PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_0695 OmpA/MotB YP_003523547.1 PFAM: Cl- channel voltage-gated family protein; KEGG: bbt:BBta_5041 H(+)/Cl(-) exchange transporter YP_003523548.1 KEGG: acl:ACL_1270 integral membrane protein YP_003523549.1 KEGG: rfr:Rfer_0088 pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; pyruvate phosphate dikinase PEP/pyruvate-binding YP_003523550.1 KEGG: ttu:TERTU_1597 flavodoxin; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_003523551.1 KEGG: azo:azo1131 hypothetical protein YP_003523552.1 KEGG: tbd:Tbd_0520 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; Argonaute and Dicer protein PAZ domain protein YP_003523553.1 KEGG: rfe:RF_1290 cell surface antigen-like protein Sca13 YP_003523554.1 KEGG: bxe:Bxe_A1388 sigma-24 (FecI); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003523555.1 KEGG: bcm:Bcenmc03_2387 hypothetical protein YP_003523556.1 KEGG: cpi:Cpin_2519 hypothetical protein YP_003523557.1 PFAM: regulatory protein TetR; KEGG: vap:Vapar_2413 transcriptional regulator, TetR family YP_003523558.1 KEGG: dar:Daro_0458 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003523559.1 PFAM: acriflavin resistance protein; KEGG: app:CAP2UW1_2665 acriflavin resistance protein YP_003523560.1 KEGG: tbd:Tbd_2697 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_003523561.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mei:Msip34_1597 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein YP_003523562.1 KEGG: aba:Acid345_0937 hypothetical protein YP_003523563.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: app:CAP2UW1_2789 TonB-dependent receptor YP_003523564.1 PFAM: Fmu (Sun) domain protein; KEGG: neu:NE0085 SAM (and some other nucleotide) binding motif YP_003523565.1 KEGG: dar:Daro_3160 hypothetical protein YP_003523566.1 KEGG: mfa:Mfla_0206 hypothetical protein YP_003523567.1 KEGG: neu:NE0087 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_003523568.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: nmn:NMCC_1133 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003523569.1 KEGG: mfa:Mfla_0204 regulatory inactivation of DnaA Hda protein; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA YP_003523570.1 KEGG: tgr:Tgr7_1417 outer membrane protein domain-containing protein YP_003523571.1 KEGG: nmu:Nmul_A2615 HAD family hydrolase; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_003523572.1 TIGRFAM: poly(A) polymerase; KEGG: mei:Msip34_2164 poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region YP_003523573.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: neu:NE0070 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_003523574.1 PFAM: deoxynucleoside kinase; KEGG: nmu:Nmul_A0880 deoxynucleoside kinase YP_003523575.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: nmu:Nmul_A0879 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_003523576.1 TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; KEGG: mei:Msip34_2168 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_003523577.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: mei:Msip34_2173 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003523578.1 TIGRFAM: adenylosuccinate lyase; KEGG: mei:Msip34_0992 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase YP_003523579.1 KEGG: bac:BamMC406_0617 tRNA-specific 2-thiouridylase MnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like YP_003523580.1 PFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase YP_003523581.1 KEGG: rpi:Rpic_2479 signal peptide protein YP_003523582.1 KEGG: gur:Gura_0299 hypothetical protein YP_003523583.1 KEGG: lhk:LHK_00598 QueA; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_003523584.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: mmb:Mmol_1935 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_003523585.1 KEGG: mei:Msip34_2232 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_003523586.1 KEGG: nmu:Nmul_A2427 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003523587.1 KEGG: nmu:Nmul_A2426 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003523588.1 PFAM: SNARE associated Golgi protein; KEGG: nmu:Nmul_A2425 hypothetical protein YP_003523589.1 manually curated; KEGG: mfa:Mfla_1109 glutamyl-Q tRNA(Asp) synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_003523590.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: nmu:Nmul_A2248 ATPase with chaperone activity; SMART: AAA ATPase YP_003523591.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: eba:ebD83 ATP-dependent Clp protease adaptor protein ClpS YP_003523592.1 KEGG: nmu:Nmul_A2246 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003523593.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: mag:amb0607 monomeric isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_003523594.1 PFAM: pseudouridine synthase; KEGG: eba:ebA713 pseudouridine synthase YP_003523595.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; manually curated; KEGG: pmr:PMI3318 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_003523596.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: azo:azo3237 hypothetical protein; SMART: regulatory protein FmdB YP_003523597.1 PFAM: protein of unknown function DUF502; KEGG: tbd:Tbd_0441 transmembrane protein YP_003523598.1 KEGG: dar:Daro_0634 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_003523599.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dar:Daro_0633 guanine-specific ribonuclease N1 and T1 YP_003523600.1 KEGG: azo:azo3242 hypothetical protein YP_003523601.1 PFAM: NUDIX hydrolase; KEGG: neu:NE2253 dATP pyrophosphohydrolase YP_003523602.1 KEGG: mms:mma_2000 quinolinate synthetase; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_003523603.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: eba:ebA4126 endonuclease / exonuclease / phosphatase family protein YP_003523604.1 KEGG: app:CAP2UW1_0295 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_003523605.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; KEGG: mfa:Mfla_1023 glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003523606.1 TIGRFAM: glucokinase; KEGG: gvi:gll1169 glucokinase; PFAM: glucokinase YP_003523607.1 KEGG: nmu:Nmul_A0682 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003523608.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: nmu:Nmul_A2296 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 YP_003523609.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cyn:Cyan7425_3855 transcriptional regulator, LysR family YP_003523610.1 KEGG: tbd:Tbd_2624 ribulose bisophosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; ribulose bisphosphate carboxylase, large subunit-like YP_003523611.1 KEGG: tbd:Tbd_2623 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain YP_003523612.1 PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_2622 rubisco activation protein CbbQ YP_003523613.1 KEGG: rme:Rmet_1498 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_003523614.1 KEGG: neu:NE1917 hypothetical protein YP_003523615.1 KEGG: net:Neut_0823 hypothetical protein YP_003523616.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: gsu:GSU2306 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003523617.1 SMART: Stress responsive alpha-beta barrel domain protein; TIGRFAM: ketose-bisphosphate aldolase; KEGG: bbt:BBta_0455 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; Stress responsive alpha-beta barrel domain protein YP_003523618.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2296 hypothetical protein YP_003523619.1 KEGG: oca:OCAR_7736 exported protein of unknown function YP_003523620.1 SMART: regulatory protein ArsR; KEGG: mei:Msip34_1149 transcriptional regulator, ArsR family YP_003523621.1 KEGG: rhi:NGR_b21810 arsenate reductase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_003523622.1 KEGG: lch:Lcho_3118 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_003523623.1 KEGG: rfr:Rfer_3639 sigma-24 (FecI-like); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003523624.1 PFAM: permease; KEGG: psa:PST_0233 permease YP_003523625.1 KEGG: rha:RHA1_ro01495 alanine dehydrogenase YP_003523626.1 KEGG: tbd:Tbd_2398 hypothetical protein YP_003523627.1 KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein YP_003523628.1 KEGG: tgr:Tgr7_2643 hypothetical protein YP_003523629.1 PFAM: OsmC family protein; KEGG: lbf:LBF_0575 OsmC-like protein YP_003523630.1 PFAM: glutaredoxin 2; KEGG: pfl:PFL_4226 hypothetical protein YP_003523631.1 SMART: PUA domain containing protein; TIGRFAM: glutamate 5-kinase; KEGG: nmu:Nmul_A1843 gamma-glutamyl kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_003523632.1 KEGG: lhk:LHK_02970 ObgE, YhbZ, obg, CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related YP_003523633.1 KEGG: neu:NE1292 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_003523634.1 KEGG: app:CAP2UW1_0764 ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_003523635.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor domain protein; Rho termination factor RNA-binding; KEGG: nmu:Nmul_A2085 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase YP_003523636.1 KEGG: net:Neut_2478 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain YP_003523637.1 KEGG: rpi:Rpic_0576 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003523638.1 KEGG: rpi:Rpic_0575 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein YP_003523639.1 PFAM: Dihaem Cytochrome C; KEGG: lch:Lcho_3009 hypothetical protein YP_003523640.1 PFAM: Domain of unknown function DUF1924; KEGG: rfr:Rfer_0746 Cytochrome C-like protein YP_003523641.1 KEGG: tbd:Tbd_1242 hypothetical protein YP_003523642.1 KEGG: aeh:Mlg_2566 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein YP_003523643.1 KEGG: cli:Clim_0823 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_003523644.1 PFAM: protein of unknown function DUF520; KEGG: tbd:Tbd_1846 nucleotide-binding protein YP_003523645.1 PFAM: protein of unknown function DUF1255; KEGG: reh:H16_A3062 hypothetical protein YP_003523646.1 KEGG: tgr:Tgr7_0142 hypothetical protein YP_003523647.1 TIGRFAM: argininosuccinate synthase; KEGG: azo:azo2186 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003523648.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: mei:Msip34_1560 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003523649.1 KEGG: mfa:Mfla_1710 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_003523650.1 KEGG: mfa:Mfla_2211 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_003523651.1 KEGG: rme:Rmet_2903 hypothetical protein YP_003523652.1 KEGG: rme:Rmet_2903 hypothetical protein YP_003523653.1 KEGG: neu:NE2405 virulence factor MviN-like; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_003523654.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: mag:amb1535 response regulator; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003523655.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nmu:Nmul_A1145 transcriptional regulator CysB-like protein YP_003523656.1 PFAM: protein of unknown function DUF81; KEGG: mfa:Mfla_1670 hypothetical protein YP_003523657.1 KEGG: nmu:Nmul_A1146 nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003523658.1 TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; KEGG: neu:NE0855 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_003523659.1 TIGRFAM: sulfate adenylyltransferase, small subunit; KEGG: nmu:Nmul_A1148 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase YP_003523660.1 TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; KEGG: nmu:Nmul_A1149 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003523661.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: dar:Daro_3023 CobD/CbiB family protein YP_003523662.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: pna:Pnap_1102 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_003523663.1 KEGG: mag:amb2853 hypothetical protein YP_003523664.1 KEGG: dar:Daro_3004 ribosome-associated GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_003523665.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: neu:NE0077 pterin-4-alpha-carbinolamine dehydratase YP_003523666.1 KEGG: mei:Msip34_1440 hypothetical protein YP_003523667.1 KEGG: neu:NE0076 M48 family peptidase; PFAM: peptidase M48 Ste24p YP_003523668.1 manually curated; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: eba:ebA5206 oligoribonuclease; SMART: Exonuclease YP_003523669.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: azo:azo1278 EAL/GGDEF/PAS/PAC-domain-containing signalling protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003523670.1 PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: mmb:Mmol_1565 YcgR family protein YP_003523671.1 TIGRFAM: ferrochelatase; KEGG: mei:Msip34_1887 ferrochelatase; PFAM: ferrochelatase YP_003523672.1 KEGG: nmu:Nmul_A2423 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein YP_003523673.1 PFAM: ATP-NAD/AcoX kinase; KEGG: nmu:Nmul_A2422 NAD(+)/NADH kinase family protein YP_003523674.1 KEGG: nmu:Nmul_A2421 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_003523675.1 PFAM: SmpA/OmlA domain protein; KEGG: mfa:Mfla_0776 SmpA/OmlA YP_003523676.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: app:CAP2UW1_3738 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003523677.1 KEGG: chu:CHU_3405 hypothetical protein YP_003523678.1 SMART: beta-lactamase domain protein; KEGG: mmb:Mmol_0130 beta-lactamase domain protein YP_003523679.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: mmb:Mmol_0131 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; EAL domain protein YP_003523680.1 PFAM: protein of unknown function DUF204; KEGG: sdl:Sdel_0559 protein of unknown function DUF204 YP_003523681.1 KEGG: mms:mma_2243 carbamoylphosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_003523682.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; KEGG: mfa:Mfla_0779 carbamoyl-phosphate synthase large subunit; SMART: MGS domain protein YP_003523683.1 KEGG: mei:Msip34_1877 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein YP_003523684.1 PFAM: protein of unknown function UPF0044; KEGG: mms:mma_2239 hypothetical protein YP_003523685.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mei:Msip34_1874 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003523686.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: nmu:Nmul_A0483 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular YP_003523687.1 TIGRFAM: dihydropteroate synthase; KEGG: mei:Msip34_1872 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003523688.1 TIGRFAM: phosphoglucosamine mutase; KEGG: mei:Msip34_1871 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003523689.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dac:Daci_4915 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003523690.1 KEGG: lhk:LHK_00522 PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component YP_003523691.1 KEGG: lhk:LHK_00523 PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component YP_003523692.1 KEGG: mpt:Mpe_A1272 phosphate-binding periplasmic (pbp) ABC transporter protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003523693.1 manually curated; TIGRFAM: triosephosphate isomerase; KEGG: nmu:Nmul_A1089 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003523694.1 KEGG: tbd:Tbd_1141 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_003523695.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mfa:Mfla_2061 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_003523696.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: cvi:CV_0942 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003523697.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; KEGG: bph:Bphy_2007 NADH dehydrogenase subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003523698.1 TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: nmu:Nmul_A1094 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_003523699.1 KEGG: nmu:Nmul_A1095 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003523700.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: nmu:Nmul_A1096 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain YP_003523701.1 KEGG: mms:mma_1468 NADH dehydrogenase I chain G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YP_003523702.1 KEGG: mei:Msip34_0678 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1 YP_003523703.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: cvi:CV_0949 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523704.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: tbd:Tbd_1151 NADH dehydrogenase I chain J YP_003523705.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mfa:Mfla_2051 NADH-ubiquinone oxidoreductase, chain 4L YP_003523706.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: tmz:Tmz1t_1753 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/ubiquinone/plastoquinone (complex I); NADH-ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003523707.1 KEGG: nmu:Nmul_A1103 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/ubiquinone/plastoquinone (complex I) YP_003523708.1 KEGG: neu:NE1764 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/ubiquinone/plastoquinone (complex I) YP_003523709.1 PFAM: NUDIX hydrolase; KEGG: tbd:Tbd_0232 hypothetical protein YP_003523710.1 PFAM: ammonium transporter; KEGG: rme:Rmet_4750 Rh-like protein/ammonium transporter YP_003523711.1 KEGG: rfr:Rfer_1058 hypothetical protein YP_003523712.1 KEGG: bpy:Bphyt_3699 hypothetical protein YP_003523713.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: paa:Paes_2394 hypothetical protein YP_003523714.1 KEGG: cph:Cpha266_0894 hypothetical protein YP_003523715.1 PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: cli:Clim_0128 N-6 DNA methylase YP_003523716.1 KEGG: cph:Cpha266_0896 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase YP_003523717.1 KEGG: mmb:Mmol_1473 hypothetical protein YP_003523718.1 KEGG: cli:Clim_1572 hypothetical protein YP_003523719.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: bcm:Bcenmc03_5052 XRE family transcriptional regulator; SMART: helix-turn-helix domain protein YP_003523720.1 KEGG: mmb:Mmol_1469 hypothetical protein YP_003523721.1 KEGG: mmb:Mmol_1468 Tn7-like transposition protein B YP_003523722.1 KEGG: mmb:Mmol_1467 hypothetical protein YP_003523723.1 KEGG: syg:sync_2889 nitrate reductase associated protein YP_003523724.1 KEGG: spc:Sputcn32_3843 hypothetical protein YP_003523725.1 KEGG: mno:Mnod_0242 hypothetical protein YP_003523726.1 KEGG: bid:Bind_2170 hypothetical protein YP_003523727.1 manually curated; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: mhu:Mhun_2466 ski2-like helicase; SMART: DEAD-like helicase ; helicase domain protein YP_003523728.1 KEGG: dps:DP2255 hypothetical protein YP_003523729.1 PFAM: FRG domain protein; KEGG: mmw:Mmwyl1_1746 hypothetical protein YP_003523730.1 KEGG: ctt:CtCNB1_2565 probable mannitol operon repressor YP_003523731.1 KEGG: glo:Glov_1418 hypothetical protein YP_003523732.1 KEGG: KLTH0G18150p YP_003523733.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: ote:Oter_2260 deaminase-reductase domain-containing protein YP_003523734.1 KEGG: pst:PSPTO_3848 DNA internalization-related competence protein ComEC/Rec2 YP_003523735.1 KEGG: eum:ECUMN_3728 hypothetical protein YP_003523736.1 PFAM: hypothetical protein; KEGG: sml:Smlt3384 hypothetical protein YP_003523737.1 KEGG: pfs:PFLU4667 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1260 YP_003523738.1 manually curated; KEGG: fjo:Fjoh_4073 hypothetical protein YP_003523739.1 KEGG: app:CAP2UW1_3538 hypothetical protein; manually curated; SMART: protein-tyrosine phosphatase, low molecular weight YP_003523740.1 PFAM: protein of unknown function DUF1260; protein of unknown function DUF695; KEGG: abc:ACICU_02508 cytoplasmic protein YP_003523741.1 KEGG: dar:Daro_3198 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003523742.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: tbd:Tbd_2172 hypothetical protein YP_003523743.1 KEGG: tbd:Tbd_2173 hypothetical protein YP_003523744.1 KEGG: tbd:Tbd_2174 hypothetical protein YP_003523745.1 KEGG: tbd:Tbd_2176 hypothetical protein YP_003523746.1 PFAM: Cytochrome C class I; KEGG: mmb:Mmol_1050 nitric-oxide reductase subunit C YP_003523747.1 KEGG: dar:Daro_3191 Cytochrome C oxidase, subunit I; PFAM: Cytochrome C oxidase subunit I YP_003523748.1 PFAM: Cytochrome C oxidase subunit III; KEGG: tbd:Tbd_0560 additional subunit of nitric oxide reductase (Nor) complex, membrane protein YP_003523749.1 KEGG: mmb:Mmol_1053 hypothetical protein YP_003523750.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: dar:Daro_3194 ATPase YP_003523751.1 KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein YP_003523752.1 KEGG: mmb:Mmol_1055 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_003523753.1 KEGG: pen:PSEEN2964 bacteriophage N4 adsorption protein B YP_003523754.1 KEGG: dar:Daro_3323 Cytochrome C, class I:cytochrome d1, heme region; PFAM: cytochrome d1 heme region; Cytochrome C class I YP_003523755.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_0492 TonB-dependent receptor YP_003523756.1 KEGG: tbd:Tbd_2327 sulfite reductase; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003523757.1 PFAM: NnrS family protein; KEGG: neu:NE1723 hypothetical protein YP_003523758.1 KEGG: dar:Daro_1673 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003523759.1 PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1672 hypothetical protein YP_003523760.1 KEGG: dar:Daro_1671 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523761.1 PFAM: regulatory protein TetR; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family YP_003523763.1 KEGG: mpl:Mpal_2054 hypothetical protein YP_003523764.1 manually curated; KEGG: cyc:PCC7424_5686 hypothetical protein YP_003523765.1 KEGG: cyc:PCC7424_5687 prophage CP4-57 regulatory YP_003523766.1 KEGG: mes:Meso_3564 MarR family transcriptional regulator YP_003523767.1 PFAM: Domain of unknown function DUF1840; KEGG: tbd:Tbd_1307 hypothetical protein YP_003523769.1 KEGG: nmu:Nmul_A2259 thiopurine S-methyltransferase; PFAM: thiopurine S-methyltransferase YP_003523770.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003523771.1 KEGG: sun:SUN_0191 hypothetical protein YP_003523772.1 KEGG: tdn:Suden_0619 sulfide-quinone reductase YP_003523773.1 PFAM: Cyd operon protein YbgE; KEGG: abb:ABBFA_001525 Cyd operon protein YbgE (Cyd_oper_YbgE) family protein YP_003523774.1 KEGG: rfr:Rfer_2364 Cyd operon protein YbgT; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein YP_003523775.1 KEGG: lhk:LHK_02253 CydB; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003523776.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rfr:Rfer_2362 cytochrome bd ubiquinol oxidase, subunit I YP_003523777.1 KEGG: bpy:Bphyt_0569 hypothetical protein YP_003523778.1 KEGG: tmz:Tmz1t_2020 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein YP_003523779.1 PFAM: methyltransferase type 11; KEGG: azo:azo3702 hypothetical protein YP_003523780.1 KEGG: tbd:Tbd_0486 hypothetical protein YP_003523781.1 PFAM: protein of unknown function DUF980; KEGG: net:Neut_1925 hypothetical protein YP_003523782.1 KEGG: mbn:Mboo_2038 membrane protein-like protein YP_003523783.1 KEGG: tmz:Tmz1t_3034 integration host factor, subunit beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003523784.1 KEGG: mms:mma_3515 hypothetical protein YP_003523785.1 KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein YP_003523786.1 KEGG: xac:XAC3767 hypothetical protein YP_003523787.1 KEGG: xac:XAC3763 hypothetical protein YP_003523788.1 KEGG: mag:amb1840 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_003523790.1 PFAM: Ankyrin; KEGG: pmx:PERMA_0372 ankyrin domain protein YP_003523791.1 PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A0052 hydrolase or acyltransferase-like protein YP_003523792.1 KEGG: mpt:Mpe_A0051 carboxypeptidase; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_003523793.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mag:amb0826 transcriptional regulator YP_003523794.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: hna:Hneap_1702 protein of unknown function DUF6 transmembrane YP_003523795.1 PFAM: protein of unknown function DUF2257; KEGG: mxa:MXAN_6813 hypothetical protein YP_003523796.1 KEGG: dar:Daro_2138 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein subunit beta YP_003523797.1 KEGG: azo:azo1077 cysteine synthase B; TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein subunit beta YP_003523798.1 KEGG: hch:HCH_05283 hypothetical protein YP_003523799.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: tbd:Tbd_2118 thioredoxin YP_003523800.1 KEGG: rso:RSc2288 hypothetical protein YP_003523801.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: bur:Bcep18194_B0508 alpha-2-macroglobulin-like large extracellular alpha-helical protein YP_003523802.1 manually curated; TIGRFAM: penicillin-binding protein 1C; KEGG: bch:Bcen2424_5133 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein YP_003523803.1 PFAM: cell wall hydrolase/autolysin; KEGG: mfa:Mfla_1381 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin YP_003523804.1 KEGG: nmu:Nmul_A2531 hypothetical protein; manually curated; PFAM: protein of unknown function UPF0079 YP_003523805.1 KEGG: mfa:Mfla_1379 4Fe-4S cluster binding; TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003523806.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; KEGG: mmb:Mmol_0655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003523807.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; GAF domain protein; KEGG: mei:Msip34_1174 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein YP_003523808.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: mgm:Mmc1_3535 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003523809.1 TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-4 domain protein; KEGG: net:Neut_1199 diguanylate phosphodiesterase; SMART: EAL domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003523810.1 KEGG: glo:Glov_3211 hypothetical protein YP_003523811.1 KEGG: gbm:Gbem_3978 hypothetical protein YP_003523812.1 PFAM: AMP-dependent synthetase and ligase; KEGG: abo:ABO_1731 acetyl-CoA synthetase YP_003523813.1 TIGRFAM: 2-methylcitrate dehydratase; KEGG: pap:PSPA7_4727 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein YP_003523814.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: bgl:bglu_2g21700 citrate synthase; PFAM: Citrate synthase YP_003523815.1 KEGG: mmw:Mmwyl1_0925 2-methylisocitrate lyase; TIGRFAM: methylisocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_003523816.1 KEGG: hch:HCH_02709 transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH YP_003523817.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; transport-associated OB domain protein; KEGG: nmu:Nmul_A0982 spermidine/putrescine ABC transporter ATP-binding subunit; SMART: AAA ATPase YP_003523818.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0981 binding-protein dependent transport system inner membrane protein YP_003523819.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0980 binding-protein dependent transport system inner membrane protein YP_003523820.1 PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0979 extracellular solute-binding protein YP_003523821.1 KEGG: rfr:Rfer_0831 ATP-dependent protease YP_003523822.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: sfu:Sfum_2864 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003523823.1 KEGG: app:CAP2UW1_2799 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003523824.1 KEGG: rfr:Rfer_3364 hypothetical protein YP_003523825.1 KEGG: ter:Tery_0958 poly-gamma-glutamate biosynthesis protein YP_003523826.1 KEGG: har:HEAR1421 sensor protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003523827.1 KEGG: mms:mma_1961 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; Tetratricopeptide repeat YP_003523828.1 TIGRFAM: transaldolase; KEGG: aha:AHA_3140 transaldolase B; PFAM: transaldolase YP_003523829.1 KEGG: eba:ebA6102 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523830.1 KEGG: fno:Fnod_0577 ATPase YP_003523831.1 KEGG: glo:Glov_2072 protein of unknown function DUF1566; manually curated; PFAM: protein of unknown function DUF1566 YP_003523832.1 manually curated; PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_003523833.1 KEGG: rfr:Rfer_3913 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003523834.1 KEGG: dvm:DvMF_1566 hypothetical protein YP_003523835.1 KEGG: rfr:Rfer_3913 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003523836.1 manually curated; KEGG: AAR034Wp; K01873 valyl-tRNA synthetase YP_003523837.1 KEGG: hypothetical protein YP_003523838.1 TIGRFAM: prevent-host-death family protein; KEGG: fsu:Fisuc_0651 prevent-host-death family protein YP_003523839.1 PFAM: plasmid stabilization system; KEGG: gme:Gmet_0677 plasmid stabilization system protein YP_003523840.1 KEGG: mag:amb3870 hypothetical protein YP_003523841.1 KEGG: tmz:Tmz1t_3864 hypothetical protein YP_003523842.1 PFAM: globin; KEGG: mca:MCA2507 hypothetical protein YP_003523843.1 PFAM: GTPase EngC; KEGG: gur:Gura_0790 ribosome small subunit-dependent GTPase A YP_003523844.1 KEGG: hna:Hneap_1461 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003523845.1 KEGG: tmz:Tmz1t_0042 hypothetical protein YP_003523846.1 KEGG: tmz:Tmz1t_0043 hypothetical protein YP_003523847.1 KEGG: hypothetical protein LOC100266683 YP_003523848.1 KEGG: pin:Ping_1650 hypothetical protein YP_003523849.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: tmz:Tmz1t_1384 signal transduction protein YP_003523850.1 KEGG: tbd:Tbd_1190 ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003523851.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mei:Msip34_0963 GCN5-related N-acetyltransferase YP_003523852.1 KEGG: pca:Pcar_2557 peptidoglycan synthetase; penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003523853.1 KEGG: pca:Pcar_2556 hypothetical protein YP_003523854.1 manually curated; KEGG: prw:PsycPRwf_1762 hypothetical protein YP_003523855.1 PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: neu:NE1564 hypothetical protein YP_003523856.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: maq:Maqu_0258 metal dependent phosphohydrolase YP_003523857.1 PFAM: 17 kDa surface antigen; KEGG: har:HEAR2232 signal peptide YP_003523858.1 KEGG: tbd:Tbd_2144 transmembrane protein YP_003523859.1 TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: dar:Daro_1720 peptidase M20C, Xaa-His dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003523860.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: swd:Swoo_4161 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003523861.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; KEGG: mei:Msip34_1112 7TM domain sensor diguanylate cyclase; SMART: GGDEF domain containing protein YP_003523862.1 KEGG: tgr:Tgr7_0590 hypothetical protein YP_003523863.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_4776 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003523864.1 PFAM: MscS Mechanosensitive ion channel; KEGG: syp:SYNPCC7002_A2738 mechanosensitive ion channel family protein YP_003523865.1 PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein YP_003523866.1 KEGG: amr:AM1_2994 cyclic nucleotide-binding protein, PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003523867.1 KEGG: tgr:Tgr7_0337 hypothetical protein YP_003523868.1 PFAM: BolA family protein; KEGG: mfa:Mfla_0244 BolA-like protein YP_003523869.1 KEGG: tbd:Tbd_2499 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin YP_003523870.1 PFAM: YaeQ family protein; KEGG: mei:Msip34_2224 YaeQ family protein YP_003523871.1 PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_1599 major facilitator transporter YP_003523872.1 KEGG: rma:Rmag_0881 sulfite reductase, subunit gamma-related protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003523873.1 KEGG: rpi:Rpic_2947 hypothetical protein YP_003523874.1 KEGG: mms:mma_1950 ribosomal small subunit pseudouridine synthase A protein; PFAM: pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_003523875.1 PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 hypothetical protein YP_003523876.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 major facilitator transporter YP_003523877.1 KEGG: pna:Pnap_4494 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase family amidotransferase; asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003523878.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_4075 hypothetical protein YP_003523879.1 KEGG: cvi:CV_0257 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003523880.1 KEGG: saz:Sama_2445 multi anti extrusion protein MatE YP_003523881.1 KEGG: pma:Pro1235 cysteinyl-tRNA synthetase YP_003523882.1 KEGG: vap:Vapar_0460 hypothetical protein YP_003523883.1 KEGG: nmu:Nmul_A1927 hypothetical protein; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase YP_003523884.1 KEGG: mms:mma_2602 hypothetical protein YP_003523885.1 PFAM: globin; KEGG: bba:Bd2638 globin YP_003523886.1 KEGG: mei:Msip34_1067 GTP-binding protein HSR1-related; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related YP_003523887.1 KEGG: bph:Bphy_1941 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003523888.1 KEGG: hypothetical protein YP_003523889.1 SMART: AAA ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; KEGG: nmu:Nmul_A1858 DNA-directed DNA polymerase; PFAM: ATPase AAA YP_003523890.1 PFAM: conserved hypothetical protein; KEGG: app:CAP2UW1_0312 hypothetical protein YP_003523891.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; KEGG: nmu:Nmul_A1856 recombination protein RecR; SMART: Toprim sub domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003523892.1 KEGG: mmb:Mmol_0695 pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_003523893.1 SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dar:Daro_0438 protein kinase YP_003523894.1 KEGG: dar:Daro_0439 hypothetical protein YP_003523895.1 KEGG: dar:Daro_0438 protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase YP_003523896.1 manually curated; KEGG: nmu:Nmul_A1738 hypothetical protein YP_003523897.1 TIGRFAM: L-aspartate oxidase; KEGG: nmu:Nmul_A1743 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003523898.1 KEGG: nmu:Nmul_A1746 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003523899.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: nmu:Nmul_A1747 anti sigma-E protein RseA YP_003523900.1 PFAM: MucB/RseB family protein; KEGG: nmu:Nmul_A1748 sigma E regulatory protein, MucB/RseB YP_003523901.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: azo:azo1633 sigma-E factor regulatory protein RseC YP_003523902.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: app:CAP2UW1_1545 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_003523903.1 TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: mms:mma_1367 GTP-binding protein LepA; SMART: elongation factor G domain protein YP_003523904.1 TIGRFAM: signal peptidase I; KEGG: nmu:Nmul_A1752 peptidase S26A, signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region YP_003523905.1 KEGG: net:Neut_1779 transmembrane protein YP_003523906.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: mei:Msip34_1780 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_003523907.1 KEGG: nmu:Nmul_A1754 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_003523908.1 KEGG: nmu:Nmul_A1757 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO YP_003523909.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: nmu:Nmul_A1759 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ YP_003523910.1 KEGG: nmu:Nmul_A1760 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_003523911.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: nmu:Nmul_A1761 beta-hexosaminidase YP_003523912.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tgr:Tgr7_0083 enoyl-CoA hydratase YP_003523913.1 KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein YP_003523914.1 KEGG: tgr:Tgr7_0081 two component transcriptional regulator, AraC family; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_003523915.1 SMART: ZipA FtsZ-binding region; KEGG: neu:NE2283 hypothetical protein YP_003523916.1 SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: pol:Bpro_2592 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif YP_003523917.1 KEGG: dar:Daro_1735 UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_003523918.1 PFAM: phosphoribosyltransferase; KEGG: cvi:CV_3900 hypoxanthine-guanine phosphoribosyltransferase YP_003523919.1 TIGRFAM: methylthioadenosine phosphorylase; KEGG: nmu:Nmul_A0650 5'-methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003523920.1 TIGRFAM: peptide deformylase; KEGG: mei:Msip34_1417 peptide deformylase; PFAM: formylmethionine deformylase YP_003523921.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: dar:Daro_3347 TrkA-N YP_003523922.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; KEGG: drm:Dred_1346 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003523923.1 KEGG: rfr:Rfer_1982 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: response regulator receiver; SMART: response regulator receiver YP_003523924.1 KEGG: dar:Daro_1978 HDIG; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region YP_003523925.1 KEGG: dar:Daro_0970 response regulator receiver; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_003523926.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: ATP-binding region ATPase domain protein; hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_1978 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003523927.1 PFAM: HPP family protein; KEGG: dal:Dalk_3567 HPP family protein YP_003523928.1 KEGG: hna:Hneap_0468 CBS domain containing membrane protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_003523929.1 KEGG: eba:ebA5264 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein YP_003523930.1 KEGG: gme:Gmet_2460 histidine kinase; PFAM: CHASE domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003523931.1 KEGG: hna:Hneap_0659 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003523932.1 PFAM: secretion protein HlyD family protein; KEGG: cbg:CbuG_1202 multidrug resistance protein A YP_003523933.1 KEGG: maq:Maqu_0619 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003523934.1 KEGG: har:HEAR0829 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein YP_003523935.1 KEGG: dac:Daci_3481 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003523936.1 PFAM: Ankyrin; KEGG: tmz:Tmz1t_3561 ankyrin YP_003523937.1 KEGG: mag:amb1840 response regulator; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003523938.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: azo:azo3777 GGDEF family protein; PFAM: GGDEF domain containing protein YP_003523939.1 SMART: helicase c2; KEGG: nmu:Nmul_A1412 helicase C2 YP_003523940.1 KEGG: app:CAP2UW1_4204 hypothetical protein YP_003523941.1 KEGG: rfr:Rfer_0862 flavin reductase-like, FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding YP_003523942.1 KEGG: noc:Noc_1628 hypothetical protein YP_003523943.1 PFAM: protein of unknown function DUF188; KEGG: mms:mma_0312 hypothetical protein YP_003523944.1 PFAM: major facilitator superfamily MFS_1; KEGG: net:Neut_0214 major facilitator transporter YP_003523945.1 PFAM: cytochrome B561; KEGG: mgm:Mmc1_0316 cytochrome b561 YP_003523946.1 KEGG: sit:TM1040_3285 outer membrane autotransporter barrel YP_003523947.1 PFAM: Domain of unknown function DUF1924; KEGG: bph:Bphy_6332 hypothetical protein YP_003523948.1 PFAM: Dihaem Cytochrome C; KEGG: abu:Abu_2321 diheme Cytochrome C precursor YP_003523949.1 PFAM: Hsp33 protein; KEGG: mfa:Mfla_1108 HSP33 protein YP_003523950.1 PFAM: FAD dependent oxidoreductase; KEGG: tbd:Tbd_1737 FAD-dependent dehydrogenase YP_003523951.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; GAF domain protein YP_003523952.1 KEGG: mag:amb1224 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003523953.1 KEGG: mth:MTH445 sensory transduction regulatory protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003523954.1 TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; response regulator receiver; KEGG: cpo:COPRO5265_0032 sensory box protein; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_003523955.1 KEGG: mei:Msip34_1427 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase YP_003523956.1 KEGG: nmu:Nmul_A1744 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003523957.1 PFAM: protein of unknown function DUF599; KEGG: har:HEAR2527 hypothetical protein YP_003523959.1 PFAM: protein of unknown function DUF347; KEGG: dar:Daro_2299 hypothetical protein YP_003523960.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); KEGG: glo:Glov_3726 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003523961.1 KEGG: abo:ABO_0065 hypothetical protein YP_003523962.1 KEGG: membrane transporter protein YP_003523963.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tbd:Tbd_1985 integral membrane protein, DUF6 YP_003523964.1 SMART: cation transporting ATPase domain protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: sat:SYN_02218 cation transport ATPase; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003523965.1 KEGG: app:CAP2UW1_2727 hypothetical protein YP_003523966.1 TIGRFAM: lactoylglutathione lyase; KEGG: bpt:Bpet0771 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003523967.1 PFAM: aldo/keto reductase; KEGG: ypb:YPTS_1101 aldo/keto reductase YP_003523968.1 KEGG: har:HEAR0065 hypothetical protein; TIGRFAM: thioesterase domain protein; PFAM: Thioesterase YP_003523969.1 KEGG: dar:Daro_0448 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003523970.1 KEGG: tbd:Tbd_1652 inorganic pyrophosphatase; PFAM: inorganic pyrophosphatase YP_003523971.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: lbf:LBF_3232 NADH:flavin oxidoreductase YP_003523972.1 KEGG: mmb:Mmol_1115 YceI family protein; PFAM: YceI family protein; SMART: YceI family protein YP_003523973.1 KEGG: dar:Daro_2795 YceI; PFAM: YceI family protein; SMART: YceI family protein YP_003523974.1 PFAM: pirin; KEGG: azo:azo3369 hypothetical protein YP_003523975.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0806 LysR family transcriptional regulator YP_003523976.1 PFAM: protein of unknown function DUF323; KEGG: mag:amb1714 hypothetical protein YP_003523977.1 KEGG: mei:Msip34_0374 Cytochrome C class I; manually curated; PFAM: Cytochrome C class I YP_003523978.1 KEGG: pwa:Pecwa_3426 hypothetical protein YP_003523980.1 manually curated; KEGG: ppf:Pput_1468 hypothetical protein YP_003523981.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: tbd:Tbd_1500 membrane-bound proton-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase YP_003523982.1 PFAM: phosphofructokinase; KEGG: tbd:Tbd_1502 6-phosphofructokinase YP_003523983.1 SMART: beta-lactamase domain protein; KEGG: azo:azo1428 flavoprotein YP_003523984.1 PFAM: protein of unknown function DUF336; KEGG: nmu:Nmul_A0738 hypothetical protein YP_003523985.1 KEGG: lhk:LHK_01105 Kad; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein YP_003523986.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: mfa:Mfla_2087 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_003523987.1 PFAM: protein of unknown function DUF343; KEGG: nmu:Nmul_A1027 hypothetical protein YP_003523988.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: mei:Msip34_0640 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003523989.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A1028 biopolymer transport protein ExbD/TolR YP_003523990.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: har:HEAR2492 biopolymer transport ExbB-like protein YP_003523991.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; KEGG: nmu:Nmul_A1030 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_003523992.1 PFAM: glycosyl transferase family 39; KEGG: app:CAP2UW1_3298 glycosyl transferase family 39 YP_003523993.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein YP_003523994.1 KEGG: pfs:PFLU5872 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_003523995.1 KEGG: app:CAP2UW1_2453 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003523996.1 PFAM: glycosyl transferase family 2; KEGG: cvi:CV_0749 dolichyl-phosphate b-D-mannosyltransferase YP_003523997.1 PFAM: formyl transferase domain protein; KEGG: app:CAP2UW1_3294 formyl transferase domain protein YP_003523998.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bgl:bglu_1g14070 NAD-dependent epimerase/dehydratase YP_003523999.1 PFAM: polysaccharide deacetylase; KEGG: app:CAP2UW1_3292 hypothetical protein YP_003524000.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: mei:Msip34_2001 metal-dependent hydrolase HDOD YP_003524001.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: cpc:Cpar_1724 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_003524002.1 PFAM: protein of unknown function DUF302; KEGG: rfr:Rfer_3468 hypothetical protein YP_003524003.1 KEGG: ote:Oter_0268 appr-1-p processing domain-containing protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein YP_003524004.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: mei:Msip34_1290 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003524005.1 PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_1369 MFS family transporter YP_003524006.1 KEGG: bav:BAV1476 phage protein YP_003524007.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; KEGG: mei:Msip34_1288 DNA mismatch repair protein MutL; SMART: MutL dimerisation; ATP-binding region ATPase domain protein YP_003524008.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dar:Daro_2953 TonB-dependent receptor YP_003524009.1 KEGG: dar:Daro_2954 hypothetical protein YP_003524010.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_2955 4Fe-4S ferredoxin, iron-sulfur binding YP_003524011.1 KEGG: dar:Daro_2956 Cytochrome C biogenesis protein, transmembrane region YP_003524012.1 TIGRFAM: TonB family protein; KEGG: mei:Msip34_0103 TonB family protein YP_003524013.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pag:PLES_01991 transport protein ExbB YP_003524014.1 PFAM: biopolymer transport protein ExbD/TolR; KEGG: rme:Rmet_2279 biopolymer transport protein ExbD/TolR YP_003524015.1 KEGG: mac:MA1988 hypothetical protein YP_003524016.1 KEGG: dia:Dtpsy_3303 NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein YP_003524017.1 KEGG: nmu:Nmul_A1152 transmembrane NAD(P) transhydrogenase (subunit alpha part 2) YP_003524018.1 KEGG: nmu:Nmul_A1153 NAD(P) transhydrogenase, subunit beta; PFAM: NAD(P) transhydrogenase subunit beta YP_003524019.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; MASE1 domain protein; PAS fold domain protein; KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003524020.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: nmu:Nmul_A2506 DNA internalization-related competence protein ComEC/Rec2; SMART: beta-lactamase domain protein YP_003524021.1 PFAM: protein of unknown function DUF2062; KEGG: dar:Daro_2833 hypothetical protein YP_003524024.1 KEGG: ara:Arad_4216 prephenate dehydrogenase protein YP_003524025.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: cvi:CV_2963 ABC transporter ATP-binding protein; SMART: AAA ATPase YP_003524026.1 KEGG: mmb:Mmol_0641 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_003524027.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: nmu:Nmul_A2416 hypothetical protein YP_003524028.1 KEGG: app:CAP2UW1_2813 cyclic nucleotide-regulated small mechanosensitive ion channel; PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; SMART: cyclic nucleotide-binding YP_003524029.1 KEGG: dar:Daro_0844 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: Acetyl-CoA carboxylase, subunit alpha, conserved region YP_003524030.1 manually curated; TIGRFAM: tRNA(Ile)-lysidine synthetase; KEGG: nmu:Nmul_A1809 hypothetical protein; PFAM: PP-loop domain protein; protein of unkown function DUF1946 PP-loop ATpase YP_003524031.1 KEGG: oca:OCAR_5297 C4-dicarboxylate-binding periplasmic protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7 YP_003524032.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mno:Mnod_5945 tripartite ATP-independent periplasmic transporter DctQ component YP_003524033.1 KEGG: mrd:Mrad2831_3266 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003524034.1 PFAM: nucleoside diphosphate kinase; KEGG: mms:mma_2131 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003524035.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; KEGG: dar:Daro_2988 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_003524036.1 KEGG: tbd:Tbd_0592 TPR repeat-containing pilus assembly protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: hypothetical protein YP_003524037.1 KEGG: tbd:Tbd_0593 hypothetical protein YP_003524038.1 TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; KEGG: app:CAP2UW1_2111 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_003524039.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: eba:ebA1260 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003524040.1 PFAM: protein of unknown function DUF2133; KEGG: neu:NE0151 hypothetical protein YP_003524041.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: mfa:Mfla_1615 pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_003524042.1 TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: nmu:Nmul_A2373 GTP-binding protein EngA; SMART: AAA ATPase YP_003524044.1 KEGG: nmu:Nmul_A0447 RNA-binding protein Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_003524045.1 KEGG: mmb:Mmol_0891 GTP-binding proten HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_003524046.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: nmu:Nmul_A0445 HflK protein; SMART: band 7 protein YP_003524047.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nmu:Nmul_A0444 HflC protein; SMART: band 7 protein YP_003524048.1 PFAM: protein of unknown function DUF2065; KEGG: dar:Daro_2976 hypothetical protein YP_003524049.1 KEGG: nmu:Nmul_A0442 ATP phosphoribosyltransferase regulatory subunit; TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S) YP_003524050.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: nmu:Nmul_A0441 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase YP_003524051.1 SMART: Cold shock protein; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; KEGG: nmu:Nmul_A1953 VacB/RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease B OB region domain YP_003524052.1 KEGG: dar:Daro_2969 RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_003524053.1 KEGG: mei:Msip34_0644 hypothetical protein YP_003524054.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mms:mma_0064 chromosome partitioning protein ParA YP_003524055.1 PFAM: protein of unknown function DUF1161; KEGG: pst:PSPTO_0154 hypothetical protein YP_003524056.1 KEGG: dal:Dalk_2479 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003524057.1 KEGG: cvi:CV_0811 transmembrane protein YP_003524058.1 PFAM: MltA-interacting MipA family protein; KEGG: pnu:Pnuc_2040 MltA-interacting MipA family protein YP_003524059.1 KEGG: mfa:Mfla_1470 amine oxidase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase YP_003524060.1 TIGRFAM: squalene synthase HpnD; KEGG: app:CAP2UW1_3259 squalene synthase HpnD; PFAM: Squalene/phytoene synthase YP_003524061.1 TIGRFAM: squalene synthase HpnC; KEGG: eba:ebA6809 terpenoid synthase-related protein; PFAM: Squalene/phytoene synthase YP_003524062.1 KEGG: nmu:Nmul_A1854 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_003524063.1 KEGG: nmu:Nmul_A1852 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003524064.1 PFAM: arsenate reductase and related; KEGG: mei:Msip34_0931 arsenate reductase and related YP_003524065.1 KEGG: dar:Daro_1725 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_003524066.1 KEGG: tbd:Tbd_1220 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_003524067.1 KEGG: nmu:Nmul_A1850 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II YP_003524068.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A1849 hypothetical protein YP_003524069.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: dal:Dalk_0216 hypothetical protein YP_003524070.1 KEGG: lch:Lcho_1540 hypothetical protein YP_003524071.1 KEGG: lch:Lcho_1541 Cytochrome C family protein YP_003524072.1 KEGG: lch:Lcho_1542 Cytochrome C family protein YP_003524073.1 manually curated; KEGG: lch:Lcho_1543 sporulation domain-containing protein YP_003524074.1 KEGG: aeh:Mlg_2089 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003524075.1 KEGG: geo:Geob_1618 NHL repeat containing protein; PFAM: hypothetical protein; Kelch repeat-containing protein; SMART: hypothetical protein; Kelch repeat-containing protein YP_003524076.1 KEGG: dar:Daro_3552 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003524077.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tbd:Tbd_1223 hypothetical protein YP_003524078.1 PFAM: AFG1-family ATPase; KEGG: cvi:CV_3022 nucleotide-binding protein YP_003524079.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; GAF domain protein; KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS domain containing protein; GAF domain protein; PAC repeat-containing protein YP_003524080.1 KEGG: btl:BALH_0723 enterotoxin/cell wall-binding protein YP_003524081.1 PFAM: aldo/keto reductase; KEGG: cya:CYA_0976 aldo/keto reductase Tas YP_003524082.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bra:BRADO5603 extradiol ring-cleavage dioxygenase YP_003524083.1 PFAM: FIST C domain; domain of unknown function DUF1745; KEGG: dar:Daro_3873 hypothetical protein YP_003524084.1 SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: rfr:Rfer_4055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein YP_003524085.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: tbd:Tbd_1227 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase YP_003524086.1 KEGG: nmu:Nmul_A0645 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein YP_003524087.1 KEGG: dar:Daro_2339 hypothetical protein YP_003524088.1 KEGG: hypothetical protein YP_003524089.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: mfa:Mfla_1141 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_003524090.1 KEGG: mfa:Mfla_1139 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; tRNA methyl transferase-like; glutamine amidotransferase class-I YP_003524091.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; MASE1 domain protein; GGDEF domain containing protein; KEGG: mei:Msip34_1597 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524092.1 KEGG: avi:Avi_5260 hypothetical protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein YP_003524093.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Ig family protein; KEGG: chu:CHU_1335 endoglucanase-like protein; SMART: Autotransporter beta- domain protein YP_003524094.1 KEGG: hoh:Hoch_3071 PKD domain containing protein YP_003524095.1 KEGG: mag:amb4390 hypothetical protein YP_003524096.1 KEGG: neurofilament protein YP_003524097.1 KEGG: mfa:Mfla_0470 17 kDa surface antigen YP_003524098.1 KEGG: nmu:Nmul_A2276 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein YP_003524099.1 TIGRFAM: methylthioadenosine phosphorylase; KEGG: rfr:Rfer_3751 5'-methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003524100.1 PFAM: class II aldolase/adducin family protein; KEGG: mei:Msip34_0855 class II aldolase/adducin family protein YP_003524101.1 KEGG: nmu:Nmul_A0935 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003524102.1 KEGG: similar to kinesin-associated protein 3 YP_003524103.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: rfr:Rfer_3749 translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; PFAM: initiation factor 2B related YP_003524104.1 PFAM: protein of unknown function DUF150; KEGG: lhk:LHK_01930 hypothetical protein YP_003524105.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; KEGG: nmu:Nmul_A1865 transcription elongation factor NusA; SMART: KH domain protein YP_003524106.1 KEGG: nmu:Nmul_A1864 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; Initiation factor 2 associated domain protein YP_003524107.1 KEGG: nmu:Nmul_A1863 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_003524108.1 KEGG: bur:Bcep18194_A4643 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B YP_003524109.1 KEGG: neu:NE0173 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_003524110.1 KEGG: mei:Msip34_0074 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; manually curated; TIGRFAM: polyribonucleotide nucleotidyltransferase; SMART: KH domain protein YP_003524111.1 PFAM: outer membrane efflux protein; KEGG: mei:Msip34_1222 type I secretion outer membrane protein, TolC family YP_003524112.1 KEGG: app:CAP2UW1_1980 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003524113.1 KEGG: sdl:Sdel_1725 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524114.1 PFAM: protein of unknown function DUF214; KEGG: mei:Msip34_1219 protein of unknown function DUF214 YP_003524115.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: tbd:Tbd_0703 hypothetical protein YP_003524116.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: nmu:Nmul_A1271 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003524117.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: rpi:Rpic_0937 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003524118.1 KEGG: lxx:Lxx01730 potassium uptake protein YP_003524119.1 KEGG: tbd:Tbd_2658 DsrC -like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003524121.1 KEGG: pnu:Pnuc_0794 hypothetical protein YP_003524122.1 KEGG: azo:azo2882 transcription regulator, Nnr-type; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding YP_003524123.1 KEGG: nmu:Nmul_A2275 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003524124.1 PFAM: SMC domain protein; KEGG: tmz:Tmz1t_1959 SMC domain protein YP_003524125.1 KEGG: cvi:CV_0860 hypothetical protein YP_003524126.1 KEGG: azo:azo1496 hypothetical protein YP_003524127.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_003524128.1 PFAM: MgtC/SapB transporter; KEGG: neu:NE0009 MgtC family membrane protein YP_003524129.1 KEGG: cvi:CV_2475 exodeoxyribonuclease VII; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_003524130.1 KEGG: mei:Msip34_2194 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003524131.1 KEGG: cyc:PCC7424_0974 hypothetical protein YP_003524132.1 TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: ppr:PBPRA2920 hydroxyacylglutathione hydrolase GloB; SMART: beta-lactamase domain protein YP_003524133.1 PFAM: methyltransferase type 11; KEGG: tbd:Tbd_1664 methyl-transferase YP_003524134.1 KEGG: nmu:Nmul_A1619 ribonuclease H; PFAM: ribonuclease H YP_003524135.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, subunit epsilon; KEGG: dar:Daro_1592 DNA polymerase III, subunit epsilon:DNA polymerase 3, subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III YP_003524136.1 PFAM: alpha/beta hydrolase fold; KEGG: cyc:PCC7424_4214 phospholipase/carboxylesterase YP_003524137.1 PFAM: HI0933 family protein; KEGG: nmu:Nmul_A2547 hypothetical protein YP_003524138.1 PFAM: LemA family protein; KEGG: nha:Nham_3402 hypothetical protein YP_003524139.1 PFAM: protein of unknown function DUF477; KEGG: nmu:Nmul_A2118 hypothetical protein YP_003524140.1 PFAM: protein of unknown function DUF477; KEGG: nmu:Nmul_A2117 hypothetical protein YP_003524141.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: nmu:Nmul_A0383 adenylate cyclase YP_003524142.1 KEGG: cbl:CLK_2115 flagellin YP_003524143.1 PFAM: UvrD/REP helicase; KEGG: mfa:Mfla_1202 ATP-dependent DNA helicase Rep YP_003524144.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cli:Clim_2370 short-chain dehydrogenase/reductase SDR YP_003524146.1 KEGG: mfa:Mfla_0072 TraR/DksA family transcriptional regulator; TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type YP_003524147.1 KEGG: mfa:Mfla_1513 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003524148.1 PFAM: protein of unknown function DUF177; KEGG: nmu:Nmul_A1069 hypothetical protein YP_003524149.1 KEGG: tbd:Tbd_1553 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_003524150.1 KEGG: nmu:Nmul_A1071 glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_003524151.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: nmu:Nmul_A1072 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003524152.1 KEGG: mfa:Mfla_1506 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_003524153.1 KEGG: tbd:Tbd_1549 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_003524154.1 KEGG: azo:azo1626 AcpP protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_003524155.1 KEGG: azo:azo1627 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase YP_003524156.1 KEGG: mfa:Mfla_1502 aminodeoxychorismate lyase apoprotein; TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV YP_003524157.1 PFAM: aminodeoxychorismate lyase; KEGG: rso:RSc1783 hypothetical protein YP_003524158.1 TIGRFAM: thymidylate kinase; KEGG: dar:Daro_2197 thymidylate kinase; PFAM: thymidylate kinase YP_003524159.1 KEGG: rpf:Rpic12D_1465 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit YP_003524160.1 KEGG: nmu:Nmul_A1381 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_003524162.1 KEGG: app:CAP2UW1_0495 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_003524163.1 KEGG: net:Neut_1809 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily YP_003524164.1 KEGG: nmu:Nmul_A1676 GCN5-related N-acetyltransferase; PFAM: CoA-binding domain protein; GCN5-related N-acetyltransferase; SMART: CoA-binding domain protein YP_003524165.1 KEGG: prw:PsycPRwf_2335 amino acid/peptide transporter YP_003524166.1 KEGG: app:CAP2UW1_0633 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003524167.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sth:STH2419 acetyltransferase YP_003524168.1 SMART: GGDEF domain containing protein; GAF domain protein; TIGRFAM: diguanylate cyclase; KEGG: mms:mma_3133 hypothetical protein; PFAM: GGDEF domain containing protein YP_003524169.1 PFAM: fatty acid desaturase; KEGG: nmu:Nmul_A2141 fatty acid desaturase YP_003524170.1 KEGG: aci:ACIAD3077 hypothetical protein YP_003524171.1 KEGG: har:HEAR3018 polyribonucleotide nucleotidyltransferase; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_003524172.1 KEGG: bxe:Bxe_A2534 HTH-type transcriptional regulator,YgjM-like; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003524173.1 KEGG: lbf:LBF_2137 hypothetical protein; manually curated; PFAM: protein of unknown function DUF2136 YP_003524174.1 KEGG: dsa:Desal_3118 signal peptide protein YP_003524175.1 KEGG: tmz:Tmz1t_0509 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003524176.1 KEGG: eba:ebB67 plasmid stabilization system protein protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system YP_003524177.1 KEGG: tgr:Tgr7_0532 prevent-host-death family protein; TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172 YP_003524178.1 KEGG: mar:MAE_21710 hypothetical protein YP_003524179.1 TIGRFAM: diguanylate cyclase; PFAM: cyclic nucleotide-binding; GGDEF domain containing protein; KEGG: mgm:Mmc1_1387 cyclic nucleotide-binding protein; SMART: GGDEF domain containing protein YP_003524180.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; KEGG: tbd:Tbd_2693 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003524181.1 KEGG: azo:azo2779 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD YP_003524182.1 KEGG: bxe:Bxe_B0541 hypothetical protein YP_003524183.1 KEGG: mms:mma_3067 hypothetical protein YP_003524184.1 KEGG: bch:Bcen2424_0216 hypothetical protein YP_003524185.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein YP_003524186.1 KEGG: plectin YP_003524187.1 KEGG: azo:azo1111 hemerythrin-like protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003524188.1 KEGG: rfr:Rfer_2029 methyl-accepting chemotaxis sensory transducer YP_003524189.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bpy:Bphyt_1572 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003524190.1 KEGG: hypothetical protein YP_003524191.1 KEGG: csa:Csal_0346 AraC family transcriptional regulator YP_003524192.1 KEGG: mms:mma_3559 hypothetical protein YP_003524193.1 KEGG: cti:RALTA_A1672 stomatin_like membrane protein; PFAM: band 7 protein; SMART: band 7 protein YP_003524194.1 PFAM: protein of unknown function DUF107; KEGG: bbr:BB2624 hypothetical protein YP_003524195.1 KEGG: cvi:CV_0283 hypothetical protein YP_003524196.1 KEGG: hypothetical protein YP_003524197.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: mms:mma_3559 hypothetical protein YP_003524198.1 KEGG: lbl:LBL_1826 adenylate cyclase-like protein YP_003524199.1 KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase YP_003524200.1 PFAM: inner-membrane translocator; KEGG: ank:AnaeK_1698 inner-membrane translocator YP_003524201.1 PFAM: Extracellular ligand-binding receptor; KEGG: ank:AnaeK_1699 extracellular ligand-binding receptor YP_003524202.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; KEGG: pin:Ping_3129 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524203.1 SMART: response regulator receiver; manually curated; KEGG: aha:AHA_1030 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver YP_003524204.1 KEGG: tmz:Tmz1t_1321 CheD, stimulates methylation of MCP protein YP_003524205.1 PFAM: MCP methyltransferase CheR-type; KEGG: pst:PSPTO_0910 chemotaxis protein methyltransferase CheR; SMART: MCP methyltransferase CheR-type YP_003524206.1 KEGG: dar:Daro_1143 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003524207.1 KEGG: dar:Daro_1144 CheW-like protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003524208.1 KEGG: mei:Msip34_2712 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein YP_003524209.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mei:Msip34_2713 anti-sigma-factor antagonist YP_003524210.1 KEGG: two-component system sensor histidine kinase/response regulator, PFAM: response regulator receiver; SMART: response regulator receiver YP_003524211.1 KEGG: mei:Msip34_2715 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003524212.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: dze:Dd1591_1894 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003524213.1 KEGG: bph:Bphy_6558 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003524214.1 SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein; TIGRFAM: PAS sensor protein; KEGG: bpy:Bphyt_6241 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; GAF domain protein; histidine kinase dimerisation and phosphoacceptor region YP_003524215.1 KEGG: hypothetical protein YP_003524216.1 PFAM: sodium/calcium exchanger membrane region; KEGG: ote:Oter_0016 hypothetical protein YP_003524217.1 KEGG: pol:Bpro_1022 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_003524218.1 KEGG: rfr:Rfer_2714 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein YP_003524219.1 SMART: Dystroglycan-type cadherin domain protein; manually curated; TIGRFAM: outer membrane adhesin like proteiin; KEGG: gur:Gura_2550 outer membrane adhesin like protein; PFAM: peptidase M23; Hemolysin-type calcium-binding region; Ig family protein YP_003524220.1 KEGG: sus:Acid_3593 serine/threonine protein kinase YP_003524221.1 KEGG: rfr:Rfer_2722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524222.1 PFAM: protein of unknown function DUF1568; KEGG: app:CAP2UW1_1050 protein of unknown function DUF1568 YP_003524223.1 PFAM: protein of unknown function DUF497; KEGG: gur:Gura_0788 hypothetical protein YP_003524224.1 KEGG: gme:Gmet_2757 hypothetical protein YP_003524225.1 KEGG: rfr:Rfer_2722 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003524226.1 KEGG: mse:Msed_1127 5-oxoprolinase (ATP-hydrolyzing) YP_003524227.1 PFAM: Thioredoxin domain; KEGG: sgr:SGR_2118 thioredoxin YP_003524228.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; KEGG: dar:Daro_0979 NADH dehydrogenase YP_003524229.1 PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; KEGG: azo:azo1413 hydrogen dehydrogenase, subunit gamma YP_003524230.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: app:CAP2UW1_0999 hydrogen dehydrogenase YP_003524231.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: nmu:Nmul_A1673 nickel-dependent hydrogenase, large subunit YP_003524232.1 TIGRFAM: hydrogenase maturation protease; KEGG: tmz:Tmz1t_2251 hydrogenase maturation protease YP_003524233.1 PFAM: protein of unknown function DUF1311; KEGG: pca:Pcar_2266 hypothetical protein YP_003524234.1 KEGG: azo:azo2664 hypothetical protein YP_003524235.1 TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0569 Cro/CI family transcriptional regulator; SMART: helix-turn-helix domain protein YP_003524236.1 manually curated; TIGRFAM: addiction module killer protein; KEGG: cpb:Cphamn1_0569 addiction module killer protein; PFAM: protein of unknown function DUF891 YP_003524237.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: tbd:Tbd_1375 Ni-Fe hydrogenase large chain YP_003524238.1 KEGG: cch:Cag_1072 sialic acid synthase YP_003524239.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_1376 heterodisulfide reductase YP_003524240.1 KEGG: tbd:Tbd_1377 hypothetical protein YP_003524241.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: tbd:Tbd_1378 Ni-Fe hydrogenase, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003524242.1 KEGG: tbd:Tbd_1380 peptidase M52, hydrogen uptake protein; TIGRFAM: hydrogenase maturation protease; hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); peptidase M52 hydrogen uptake protein YP_003524243.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mfa:Mfla_1107 tRNA/rRNA methyltransferase (SpoU) YP_003524244.1 KEGG: neu:NE1729 hypothetical protein; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_003524245.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: nmu:Nmul_A2318 chromosome segregation and condensation protein ScpA YP_003524246.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: nmu:Nmul_A2317 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003524247.1 PFAM: peptidase M50; KEGG: nmu:Nmul_A2316 peptidase M50 YP_003524248.1 KEGG: gym:GYMC10_4718 daunorubicin resistance ABC transporter ATPase subunit YP_003524249.1 KEGG: mfa:Mfla_1876 SUA5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain YP_003524250.1 KEGG: mei:Msip34_0918 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003524251.1 PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein YP_003524252.1 PFAM: cyclase/dehydrase; KEGG: mei:Msip34_1230 cyclase/dehydrase YP_003524253.1 KEGG: nmu:Nmul_A1203 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_003524254.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: scl:sce7999 bifunctional methionine sulfoxide reductase B/A protein; PFAM: Methionine sulfoxide reductase A YP_003524255.1 KEGG: tna:CTN_0513 pyrophosphate-energized proton pump YP_003524256.1 KEGG: tmz:Tmz1t_3552 conserved hypothetical membrane spanning protein YP_003524257.1 KEGG: azo:azo1895 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_003524258.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: mfa:Mfla_1517 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003524259.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: mpt:Mpe_A1968 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003524260.1 KEGG: mei:Msip34_1400 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003524261.1 KEGG: eba:ebA5998 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (FirA protein); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein YP_003524262.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: tbd:Tbd_0794 outer membrane protein YP_003524263.1 KEGG: nmu:Nmul_A0665 surface antigen (D15); TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein YP_003524264.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: nmu:Nmul_A0664 peptidase M50, membrane-associated zinc metallopeptidase; SMART: PDZ/DHR/GLGF domain protein YP_003524265.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: tmz:Tmz1t_2172 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003524266.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mfa:Mfla_1525 phosphatidate cytidylyltransferase YP_003524267.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: mmb:Mmol_1164 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003524268.1 KEGG: mei:Msip34_1408 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_003524269.1 KEGG: mmb:Mmol_1166 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003524270.1 KEGG: tmz:Tmz1t_2177 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_003524271.1 KEGG: nmu:Nmul_A0657 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_003524272.1 PFAM: type IV pilus assembly PilZ; KEGG: tmz:Tmz1t_0639 type IV pilus assembly PilZ YP_003524273.1 PFAM: nitrogen regulatory protein P-II; KEGG: tmz:Tmz1t_1760 nitrogen regulatory protein P-II YP_003524274.1 TIGRFAM: NAD+ synthetase; KEGG: app:CAP2UW1_2302 NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003524275.1 PFAM: protein of unknown function DUF195; KEGG: mei:Msip34_1733 protein of unknown function DUF195 YP_003524276.1 PFAM: dienelactone hydrolase; KEGG: nmu:Nmul_A0914 dienelactone hydrolase YP_003524277.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: tbd:Tbd_0772 GTP-binding protein TypA; SMART: elongation factor G domain protein YP_003524278.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: tcx:Tcr_1222 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein YP_003524279.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: mgm:Mmc1_1819 phosphonate-binding periplasmic protein YP_003524280.1 KEGG: nmu:Nmul_A1799 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003524281.1 KEGG: cvi:CV_0272 hypothetical protein YP_003524282.1 KEGG: nmu:Nmul_A2632 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003524283.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: mei:Msip34_1413 UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain YP_003524284.1 PFAM: porin LamB type; KEGG: pna:Pnap_3690 maltoporin precursor YP_003524285.1 PFAM: extracellular solute-binding protein family 1; KEGG: rfr:Rfer_3242 extracellular solute-binding protein YP_003524286.1 SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; GAF domain protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: mfa:Mfla_2628 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; GAF domain protein YP_003524287.1 KEGG: tbd:Tbd_0133 hypothetical protein YP_003524288.1 KEGG: tbd:Tbd_0132 hypothetical protein YP_003524289.1 SMART: Ankyrin; KEGG: tbd:Tbd_2728 hypothetical protein YP_003524290.1 KEGG: afw:Anae109_0587 hypothetical protein YP_003524291.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; KEGG: tbd:Tbd_1770 flavodoxin oxidoreductase YP_003524292.1 KEGG: mfa:Mfla_0652 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Sirohaem synthase, dimerisation domain YP_003524293.1 KEGG: tbd:Tbd_2342 hypothetical protein YP_003524294.1 KEGG: tgr:Tgr7_2197 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase YP_003524295.1 PFAM: polysulphide reductase NrfD; KEGG: vok:COSY_0784 intracellular sulfur oxidation protein DsrP YP_003524296.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_2475 iron-sulfur cluster protein YP_003524297.1 KEGG: tbd:Tbd_2476 hypothetical protein YP_003524298.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_2477 glutamate synthase (NADPH) small subunit YP_003524299.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit YP_003524300.1 PFAM: nitrate reductase subunit gamma; KEGG: tbd:Tbd_2479 DsrM protein YP_003524301.1 KEGG: tgr:Tgr7_2190 sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003524302.1 KEGG: tbd:Tbd_2481 DsrH protein; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein YP_003524303.1 KEGG: tgr:Tgr7_2188 sulfur relay protein TusC/DsrF; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein YP_003524304.1 KEGG: tbd:Tbd_2483 DsrE protein; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein YP_003524305.1 TIGRFAM: sulfite reductase, dissimilatory-type subunit beta; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type subunit beta; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003524306.1 TIGRFAM: sulfite reductase, dissimilatory-type subunit alpha; KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type subunit alpha; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_003524307.1 KEGG: tbd:Tbd_2486 hypothetical protein YP_003524308.1 KEGG: mxa:MXAN_7265 CRISPR-associated Cas6 family protein; TIGRFAM: CRISPR-associated protein, Cas6-related; PFAM: CRISPR-associated protein Cas6-related YP_003524309.1 manually curated; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: tbd:Tbd_2488 sulfite reductase gamma chain; PFAM: DsrC family protein YP_003524310.1 PFAM: SirA family protein; KEGG: pvi:Cvib_0036 SirA family protein YP_003524311.1 KEGG: tbd:Tbd_2490 hypothetical protein YP_003524312.1 KEGG: tbd:Tbd_2491 hypothetical protein YP_003524313.1 PFAM: glutaredoxin; KEGG: dar:Daro_1103 glutaredoxin family protein YP_003524314.1 PFAM: Domain of unknown function DUF1791; KEGG: hna:Hneap_0173 domain of unknown function DUF1791 YP_003524315.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_4041 YeeE/YedE YP_003524316.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: mms:mma_0453 sulfur oxidation protein SoxB YP_003524317.1 KEGG: tbd:Tbd_0918 diheme cytochrome SoxA (sulfur oxidation) YP_003524318.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: tbd:Tbd_0565 sulfur compound chelating protein SoxZ YP_003524319.1 KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal YP_003524320.1 PFAM: Cytochrome C class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation) YP_003524321.1 PFAM: Domain of unknown function DUF1791; KEGG: tbd:Tbd_1835 hypothetical protein YP_003524322.1 KEGG: tbd:Tbd_1836 sigma-24 (FecI); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003524323.1 KEGG: tgr:Tgr7_1401 hypothetical protein YP_003524324.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: nmu:Nmul_A2445 thiol:disulphide interchange protein YP_003524325.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mei:Msip34_2161 membrane protein involved in aromatic hydrocarbon degradation YP_003524326.1 KEGG: afr:AFE_2556 hypothetical protein YP_003524327.1 PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein YP_003524328.1 KEGG: tmz:Tmz1t_1634 sulphate transporter; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS YP_003524329.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tgr:Tgr7_0338 hypothetical protein YP_003524330.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0339 iron-sulfur cluster-binding protein YP_003524331.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tgr:Tgr7_0340 molybdopterin oxidoreductase family protein YP_003524332.1 TIGRFAM: sulfate adenylyltransferase; KEGG: tgr:Tgr7_0353 sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_003524333.1 KEGG: tbd:Tbd_2284 hypothetical protein YP_003524334.1 KEGG: tgr:Tgr7_0351 adenylylsulfate reductase, subunit beta; TIGRFAM: adenylylsulfate reductase, subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003524335.1 KEGG: tgr:Tgr7_0350 adenylylsulfate reductase; TIGRFAM: adenylylsulfate reductase, subunit alpha; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003524336.1 KEGG: rma:Rmag_0089 hypothetical protein YP_003524337.1 KEGG: tgr:Tgr7_0348 peptidyl-prolyl cis-trans isomerase YP_003524338.1 KEGG: mno:Mnod_8810 tetratricopeptide domain protein YP_003524339.1 KEGG: swo:Swol_1000 hypothetical protein; manually curated; PFAM: histidine triad (HIT) protein YP_003524340.1 KEGG: tgr:Tgr7_0343 hypothetical protein YP_003524341.1 KEGG: sse:Ssed_1815 hypothetical protein YP_003524342.1 KEGG: tbd:Tbd_0235 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003524343.1 KEGG: tgr:Tgr7_0341 phosphodiesterase, MJ0936 family; manually curated; PFAM: metallophosphoesterase YP_003524344.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tbd:Tbd_2463 GAF sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; GAF domain protein YP_003524345.1 KEGG: tbd:Tbd_2464 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003524346.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tbd:Tbd_2225 sulfide-quinone reductase YP_003524347.1 KEGG: tbd:Tbd_1014 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003524348.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: nmu:Nmul_A0493 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein YP_003524349.1 TIGRFAM: phenylalanyl-tRNA synthetase, subunit beta; KEGG: mei:Msip34_0722 phenylalanyl-tRNA synthetase, subunit beta YP_003524351.1 TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; KEGG: mfa:Mfla_1999 phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_003524352.1 KEGG: cvi:CV_1351 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_003524353.1 KEGG: har:HEAR1799 50S ribosomal subunit protein A; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35 YP_003524354.1 manually curated; TIGRFAM: translation initiation factor IF-3; KEGG: bps:BPSL1944 translation initiation factor IF-3; PFAM: translation initiation factor 3-like YP_003524355.1 SMART: Threonyl/alanyl tRNA synthetase SAD; TIGRFAM: threonyl-tRNA synthetase; KEGG: dar:Daro_2677 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; TGS domain protein YP_003524356.1 PFAM: protein of unknown function DUF140; KEGG: geo:Geob_2687 protein of unknown function DUF140 YP_003524357.1 KEGG: hha:Hhal_1889 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003524358.1 SMART: Tetratricopeptide repeat; KEGG: glo:Glov_1853 tetratricopeptide TPR_2 repeat protein YP_003524359.1 PFAM: mammalian cell entry related domain protein; KEGG: gur:Gura_1894 hypothetical protein YP_003524360.1 KEGG: gur:Gura_1895 ABC-type transport system involved in resistance to organic solvents ATPase component-like protein YP_003524361.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: nmu:Nmul_A1947 replicative DNA helicase; SMART: AAA ATPase YP_003524362.1 KEGG: nmu:Nmul_A1948 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9-like YP_003524363.1 KEGG: eba:ebB142 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_003524364.1 KEGG: mei:Msip34_1433 single-strand binding protein/primosomal replication protein N YP_003524365.1 KEGG: mfa:Mfla_1326 SSU ribosomal protein S6P; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6, bacterial-like YP_003524366.1 PFAM: protein of unknown function DUF214; KEGG: nmu:Nmul_A0948 hypothetical protein YP_003524367.1 KEGG: pna:Pnap_4960 hypothetical protein YP_003524368.1 KEGG: nmu:Nmul_A1972 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524369.1 KEGG: mfa:Mfla_1250 arylesterase; PFAM: lipolytic protein G-D-S-L family YP_003524370.1 PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein YP_003524371.1 PFAM: peptidase S49; KEGG: mfa:Mfla_1324 peptidase S49 YP_003524372.1 KEGG: app:CAP2UW1_1528 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003524373.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: lhk:LHK_02409 RNA 2'-O-ribose methyltransferase XF_0748 YP_003524374.1 KEGG: GE21994 gene product from transcript GE21994-RA YP_003524375.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: cti:RALTA_A2082 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4 domain protein YP_003524376.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: mei:Msip34_1264 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein YP_003524377.1 KEGG: ppr:PBPRB1987 hypothetical protein YP_003524378.1 KEGG: cja:CJA_1783 protein-tyrosine-phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_003524379.1 KEGG: xau:Xaut_0992 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003524380.1 PFAM: GMC oxidoreductase; glucose-methanol-choline oxidoreductase; KEGG: lbl:LBL_2806 flavoprotein YP_003524381.1 KEGG: ote:Oter_1251 glycoside hydrolase family protein YP_003524382.1 PFAM: AB-hydrolase associated lipase region; KEGG: tcu:Tcur_1997 AB-hydrolase associated lipase region YP_003524383.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; KEGG: nmu:Nmul_A1361 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_003524384.1 KEGG: dma:DMR_p1_00490 hypothetical protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891 YP_003524385.1 TIGRFAM: addiction module antidote protein; KEGG: bam:Bamb_5333 transcriptional regulator YP_003524386.1 KEGG: bfr:BF1913 protoporphyrinogen oxidase YP_003524387.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mms:mma_0137 peroxiredoxin YP_003524388.1 PFAM: Cytochrome C class I; KEGG: tmz:Tmz1t_3728 Cytochrome C class I YP_003524389.1 KEGG: avi:Avi_3785 stability protein StbE; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system YP_003524390.1 KEGG: avi:Avi_3784 hypothetical protein; TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172 YP_003524391.1 PFAM: ROK family protein; KEGG: sfu:Sfum_0489 ROK family protein YP_003524392.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: aha:AHA_3237 GGDEF domain-containing protein; SMART: GGDEF domain containing protein YP_003524393.1 KEGG: kko:Kkor_2277 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003524394.1 KEGG: vfm:VFMJ11_0290 hypothetical protein YP_003524395.1 PFAM: protein of unknown function DUF427; KEGG: cyb:CYB_0069 hypothetical protein YP_003524396.1 PFAM: protein of unknown function DUF323; KEGG: psa:PST_1444 hypothetical protein YP_003524397.1 KEGG: noc:Noc_2028 hypothetical protein; TIGRFAM: methyltransferase; PFAM: protein of unknown function DUF2260 YP_003524398.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eba:ebA4464 hypothetical protein YP_003524399.1 PFAM: aminotransferase class I and II; KEGG: mca:MCA1021 aminotransferase, classes I and II YP_003524400.1 KEGG: hna:Hneap_1427 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003524401.1 KEGG: signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CBS domain containing protein YP_003524402.1 KEGG: sfu:Sfum_3915 MOFRL domain-containing protein; PFAM: MOFRL domain protein YP_003524403.1 PFAM: aminotransferase class I and II; KEGG: nmu:Nmul_A1360 aminotransferase, class I and II YP_003524404.1 KEGG: psa:PST_1218 signal transduction protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD YP_003524405.1 KEGG: kinetoplast-associated protein-like protein YP_003524406.1 TIGRFAM: Cytochrome C-type biogenesis protein CcmI; KEGG: neu:NE0771 hypothetical protein YP_003524407.1 PFAM: cytochrome C biogenesis protein; KEGG: nmu:Nmul_A1207 Cytochrome C biogenesis protein YP_003524408.1 KEGG: neu:NE0769 periplasmic protein thiol:disulfide oxidoreductase DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein YP_003524409.1 KEGG: nmu:Nmul_A1209 Cytochrome C-type biogenesis protein CcmF; TIGRFAM: Cytochrome C-type biogenesis protein CcmF; PFAM: Cytochrome C assembly protein YP_003524410.1 PFAM: CcmE/CycJ protein; KEGG: app:CAP2UW1_0724 CcmE/CycJ protein YP_003524411.1 KEGG: lhk:LHK_02089 hypothetical protein; TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD) YP_003524412.1 KEGG: nmu:Nmul_A1212 heme exporter protein CcmC; TIGRFAM: heme exporter protein CcmC; PFAM: Cytochrome C assembly protein YP_003524413.1 KEGG: nmu:Nmul_A1216 heme exporter protein CcmB; TIGRFAM: heme exporter protein CcmB; PFAM: Cytochrome C-type biogenesis protein CcmB YP_003524414.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: nmu:Nmul_A1217 Cytochrome C biogenesis protein CcmA; SMART: AAA ATPase YP_003524415.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA6664 enoyl-[acyl-carrier-protein] reductase YP_003524416.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2336 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003524417.1 manually curated; PFAM: histone family protein DNA-binding protein; KEGG: tbd:Tbd_1674 histone-like DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003524418.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: nmu:Nmul_A2338 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA YP_003524419.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; KEGG: nmu:Nmul_A2339 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase YP_003524420.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: azo:azo2071 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP YP_003524421.1 KEGG: lhk:LHK_00862 Tig; TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type YP_003524422.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; KEGG: gme:Gmet_2767 glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003524423.1 PFAM: glycoside hydrolase family 57; KEGG: nmu:Nmul_A0719 glycoside hydrolase family protein YP_003524424.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; KEGG: mei:Msip34_1271 glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase YP_003524425.1 KEGG: mfa:Mfla_1472 glycogen/starch synthases, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003524426.1 KEGG: tgr:Tgr7_0871 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_003524427.1 KEGG: mfa:Mfla_1367 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region YP_003524428.1 KEGG: rso:RSc2293 hypothetical protein YP_003524429.1 PFAM: electron transport protein SCO1/SenC; KEGG: rso:RSc2292 transmembrane protein YP_003524430.1 KEGG: rso:RSc2295 signal peptide protein YP_003524431.1 KEGG: rme:Rmet_4699 transmembrane protein YP_003524432.1 PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4700 signal peptide protein YP_003524433.1 PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4701 multicopper oxidase, type 3 YP_003524434.1 PFAM: multicopper oxidase type 2; KEGG: rme:Rmet_4702 multicopper oxidase, type 3 YP_003524435.1 KEGG: sfu:Sfum_1663 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003524436.1 SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; TIGRFAM: PAS sensor protein; KEGG: sfu:Sfum_3668 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase dimerisation and phosphoacceptor region YP_003524437.1 KEGG: sfu:Sfum_1664 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003524438.1 KEGG: tbd:Tbd_1303 hypothetical protein YP_003524439.1 PFAM: type II secretion system protein G; KEGG: mfa:Mfla_1334 methylation YP_003524440.1 KEGG: lch:Lcho_3885 hypothetical protein YP_003524441.1 PFAM: type II and III secretion system protein; NolW domain protein; cellulosome anchoring protein cohesin region; Secretin/TonB short domain; KEGG: rso:RS02977 GspD-related protein YP_003524442.1 KEGG: tbd:Tbd_1299 prolin-rich transmembrane protein YP_003524443.1 KEGG: avn:Avin_29120 hypothetical protein YP_003524444.1 KEGG: hypothetical protein YP_003524445.1 KEGG: tbd:Tbd_1296 hypothetical protein YP_003524446.1 PFAM: type II secretion system protein E; KEGG: tbd:Tbd_1295 type II secretion system protein YP_003524447.1 PFAM: type II secretion system F domain; KEGG: tbd:Tbd_1294 type II secretion system protein F YP_003524448.1 KEGG: nmu:Nmul_A2590 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_003524449.1 KEGG: dar:Daro_1202 zinc-containing alcohol dehydrogenase superfamily protein; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein YP_003524450.1 KEGG: azo:azo1556 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein YP_003524451.1 SMART: transketolase central region; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: nmu:Nmul_A0857 2-oxoglutarate dehydrogenase E1 component; PFAM: transketolase central region; dehydrogenase E1 component YP_003524452.1 TIGRFAM: citrate synthase I; KEGG: cvi:CV_1070 type II citrate synthase; PFAM: Citrate synthase YP_003524453.1 PFAM: protein of unknown function DUF339; KEGG: neu:NE2372 hypothetical protein YP_003524454.1 KEGG: cvi:CV_1068 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003524455.1 KEGG: nmu:Nmul_A0861 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003524456.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: dar:Daro_2864 succinate dehydrogenase subunit D YP_003524457.1 KEGG: azo:azo1549 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit YP_003524458.1 KEGG: nmu:Nmul_A0864 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_003524459.1 manually curated; KEGG: plt:Plut_1931 hypothetical protein YP_003524460.1 PFAM: protein of unknown function DUF52; KEGG: rfr:Rfer_0398 hypothetical protein YP_003524461.1 PFAM: AMMECR1 domain protein; KEGG: tbd:Tbd_1586 hypothetical protein YP_003524462.1 PFAM: radical SAM domain protein; KEGG: rfr:Rfer_0396 radical SAM family protein YP_003524463.1 KEGG: reu:Reut_B4068 response regulator receiver; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003524464.1 KEGG: pna:Pnap_2842 hypothetical protein YP_003524465.1 KEGG: app:CAP2UW1_3061 lipoprotein transmembrane YP_003524466.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: neu:NE1527 acetyl-CoA acetyltransferase YP_003524467.1 PFAM: protein of unknown function DUF86; KEGG: app:CAP2UW1_0718 protein of unknown function DUF86 YP_003524468.1 PFAM: DNA polymerase beta domain protein region; KEGG: app:CAP2UW1_0719 DNA polymerase beta domain protein region YP_003524469.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA YP_003524470.1 KEGG: vpa:VP2135 phage-related protein YP_003524471.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sde:Sde_2747 hypothetical protein YP_003524472.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; KEGG: nmu:Nmul_A0097 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_003524473.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rfr:Rfer_2706 membrane protein involved in aromatic hydrocarbon degradation YP_003524474.1 PFAM: thioesterase superfamily protein; KEGG: bvi:Bcep1808_2816 thioesterase superfamily protein YP_003524475.1 PFAM: AMP-dependent synthetase and ligase; KEGG: neu:NE1549 AMP-dependent synthetase and ligase YP_003524476.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rmr:Rmar_2203 short-chain dehydrogenase/reductase SDR YP_003524477.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: nmu:Nmul_A0094 acyl-CoA dehydrogenase YP_003524478.1 KEGG: ajs:Ajs_1333 hypothetical protein YP_003524479.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein YP_003524480.1 KEGG: app:CAP2UW1_4655 hypothetical protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003524481.1 KEGG: app:CAP2UW1_0150 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_003524482.1 KEGG: tbd:Tbd_1326 hypothetical protein YP_003524483.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: rpi:Rpic_1711 cyclopropane-fatty-acyl-phospholipid synthase YP_003524484.1 TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sat:SYN_02351 cation transport ATPase; SMART: TRASH domain protein YP_003524485.1 PFAM: protein of unknown function DUF2078, membrane; KEGG: tbd:Tbd_2741 hypothetical protein YP_003524486.1 KEGG: rbi:RB2501_04755 hypothetical protein YP_003524487.1 KEGG: azo:azo2652 hypothetical protein; manually curated; PFAM: protein of unknown function DUF125 transmembrane YP_003524488.1 PFAM: protein of unknown function DUF1211; KEGG: pna:Pnap_1340 hypothetical protein YP_003524489.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acp:A2cp1_3438 ferredoxin--NADP(+) reductase YP_003524490.1 KEGG: gem:GM21_3044 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003524491.1 KEGG: hypothetical protein YP_003524493.1 PFAM: Cytochrome C class I; KEGG: tbd:Tbd_0129 Cytochrome C-type protein YP_003524494.1 PFAM: Cytochrome C class I; KEGG: tbd:Tbd_0128 Cytochrome C YP_003524495.1 PFAM: protein of unknown function DUF28; KEGG: psb:Psyr_3028 hypothetical protein YP_003524496.1 KEGG: nha:Nham_1934 hypothetical protein YP_003524497.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: mfa:Mfla_1097 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein YP_003524498.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: mei:Msip34_0822 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003524499.1 PFAM: septum formation initiator; KEGG: nmu:Nmul_A1229 septum formation initiator YP_003524500.1 TIGRFAM: enolase; KEGG: nmu:Nmul_A1228 phosphopyruvate hydratase; PFAM: Enolase-like YP_003524501.1 KEGG: tmz:Tmz1t_1662 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003524502.1 TIGRFAM: CTP synthase; KEGG: rpf:Rpic12D_1065 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003524503.1 KEGG: sde:Sde_3612 methionine biosynthesis MetW YP_003524504.1 KEGG: Fam163b; family with sequence similarity 163, member B YP_003524505.1 PFAM: Lytic transglycosylase catalytic; KEGG: hdu:HD1549 hypothetical protein YP_003524506.1 KEGG: nis:NIS_0505 copper resistance protein A YP_003524507.1 KEGG: tgr:Tgr7_1649 phage-related membrane protein YP_003524508.1 KEGG: speract protein YP_003524509.1 KEGG: bph:Bphy_1862 hypothetical protein YP_003524510.1 KEGG: peptide transporter PTR2-A; K03305 proton-dependent oligopeptide transporter, POT family YP_003524511.1 KEGG: hypothetical protein YP_003524512.1 KEGG: xfa:XF2318 hypothetical protein YP_003524513.1 KEGG: xfa:XF2317 hypothetical protein YP_003524514.1 PFAM: Baseplate J family protein; KEGG: acr:Acry_2524 baseplate J family protein YP_003524515.1 KEGG: bgl:bglu_1g20320 phage tail protein YP_003524516.1 KEGG: acr:Acry_2522 phage baseplate assembly protein V YP_003524517.1 KEGG: bgl:bglu_1g20340 hypothetical protein YP_003524518.1 KEGG: bgl:bglu_1g20350 hypothetical protein YP_003524519.1 KEGG: rso:RSc1914 phage-related tail transmembrane protein YP_003524520.1 TIGRFAM: phage protein, HK97 gp10 family; KEGG: rso:RSc2479 bacteriophage-like protein YP_003524522.1 KEGG: rso:RSc2481 hypothetical protein YP_003524523.1 KEGG: acr:Acry_2516 hypothetical protein YP_003524524.1 KEGG: acr:Acry_2515 hypothetical protein YP_003524525.1 KEGG: hypothetical protein YP_003524526.1 KEGG: bgl:bglu_1g20410 hypothetical protein YP_003524527.1 manually curated; KEGG: bgl:bglu_1g20420 hypothetical protein YP_003524528.1 KEGG: bgl:bglu_1g20430 hypothetical protein YP_003524529.1 KEGG: rle:RL3940 hypothetical protein YP_003524530.1 KEGG: bgl:bglu_1g20440 hypothetical protein YP_003524531.1 KEGG: bgl:bglu_1g20450 hypothetical protein YP_003524532.1 KEGG: bgl:bglu_1g20460 hypothetical protein YP_003524533.1 KEGG: hypothetical protein YP_003524534.1 KEGG: ljf:FI9785_460 hypothetical protein YP_003524535.1 KEGG: rer:RER_19080 hypothetical protein YP_003524536.1 KEGG: bgl:bglu_1g20470 hypothetical protein YP_003524537.1 PFAM: portal protein; KEGG: bgl:bglu_1g20480 hypothetical protein YP_003524538.1 KEGG: gbe:GbCGDNIH1_1583 large terminase subunit; TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264 YP_003524539.1 PFAM: protein of unknown function DUF2280; KEGG: mlo:mlr8001 hypothetical protein YP_003524540.1 KEGG: mrd:Mrad2831_5698 hypothetical protein YP_003524541.1 KEGG: bav:BAV1452 phage protein YP_003524542.1 KEGG: bav:BAV1451 phage protein YP_003524543.1 KEGG: ecp:ECP_4546 hypothetical protein YP_003524545.1 KEGG: Leishmanolysin family protein YP_003524546.1 PFAM: endodeoxyribonuclease RusA; KEGG: lhk:LHK_01785 Holliday junction resolvase YP_003524547.1 KEGG: mms:mma_2229 hypothetical protein YP_003524549.1 KEGG: rpf:Rpic12D_2272 hypothetical protein YP_003524550.1 PFAM: protein of unknown function DUF1367; KEGG: bvi:Bcep1808_7703 hypothetical protein YP_003524551.1 KEGG: bmj:BMULJ_04649 bacteriophage protein YP_003524552.1 KEGG: bph:Bphy_3412 hypothetical protein YP_003524553.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mei:Msip34_1664 DNA methylase N-4/N-6 domain protein YP_003524554.1 KEGG: rpf:Rpic12D_2280 hypothetical protein YP_003524555.1 KEGG: bgl:bglu_1g20610 hypothetical protein YP_003524556.1 manually curated; KEGG: eba:ebB253 hypothetical protein YP_003524557.1 KEGG: ngk:NGK_0651 lambda repressor protein CI, phage associated protein YP_003524558.1 KEGG: similar to KIAA0155 YP_003524559.1 manually curated; KEGG: ypy:YPK_1216 hypothetical protein YP_003524560.1 KEGG: fsu:Fisuc_2380 hypothetical protein YP_003524562.1 KEGG: mms:mma_2229 hypothetical protein YP_003524563.1 KEGG: abn:AB57_3259 hypothetical protein YP_003524564.1 KEGG: rpi:Rpic_2345 hypothetical protein; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family YP_003524565.1 KEGG: rpi:Rpic_2343 hypothetical protein YP_003524566.1 KEGG: rpi:Rpic_2346 hypothetical protein YP_003524567.1 KEGG: bba:Bd3548 hypothetical protein YP_003524568.1 KEGG: bpt:Bpet0095 sensor histidine kinase YP_003524569.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase) YP_003524571.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: pjd:Pjdr2_1600 C-5 cytosine-specific DNA methylase YP_003524572.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mrd:Mrad2831_5743 phosphoadenosine phosphosulfate reductase YP_003524573.1 KEGG: similar to WD repeat domain 36 YP_003524574.1 KEGG: eoi:ECO111_p2-102 hypothetical protein YP_003524575.1 PFAM: Gp37Gp68 family protein; KEGG: nfa:nfa39500 hypothetical protein YP_003524576.1 PFAM: protein of unknown function DUF1643; KEGG: dsh:Dshi_2991 hypothetical protein YP_003524577.1 KEGG: eba:p1B17 hypothetical protein YP_003524578.1 KEGG: sal:Sala_2989 hypothetical protein YP_003524579.1 KEGG: bpt:Bpet0945 hypothetical protein YP_003524580.1 KEGG: hypothetical protein YP_003524581.1 KEGG: mfa:Mfla_2424 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003524582.1 KEGG: hypothetical protein LOC100024879 YP_003524583.1 manually curated; KEGG: eba:ebA531 hypothetical protein YP_003524584.1 KEGG: eba:ebA532 site-specific recombinases; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain YP_003524586.1 KEGG: Cobalt-zinc-cadmium resistance protein czcB, TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003524587.1 KEGG: mmb:Mmol_1762 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_003524588.1 KEGG: bja:blr4113 hypothetical protein YP_003524589.1 KEGG: dar:Daro_2803 outer membrane efflux protein YP_003524590.1 KEGG: rfr:Rfer_0192 hypothetical protein YP_003524591.1 KEGG: tgr:Tgr7_1532 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003524592.1 KEGG: mei:Msip34_1577 acetate/CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_003524593.1 manually curated; PFAM: Lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; KEGG: mmb:Mmol_1308 lytic transglycosylase catalytic; SMART: peptidoglycan-binding LysM YP_003524594.1 KEGG: dar:Daro_0126 hypothetical protein YP_003524595.1 PFAM: protein of unknown function DUF2311, membrane; KEGG: mmb:Mmol_0026 transmembrane protein YP_003524596.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: azo:azo3667 hypothetical protein YP_003524597.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: nmu:Nmul_A2331 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase YP_003524598.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A2332 binding-protein dependent transport system inner membrane protein YP_003524599.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: app:CAP2UW1_3046 binding-protein-dependent transport systems inner membrane component YP_003524600.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: lil:LB070 hypothetical protein YP_003524601.1 PFAM: DSBA oxidoreductase; KEGG: gym:GYMC10_4000 DsbA oxidoreductase YP_003524602.1 KEGG: tbd:Tbd_2098 glycine cleavage T-protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel YP_003524603.1 KEGG: mei:Msip34_2228 integral membrane protein YP_003524604.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A0440 GCN5-related N-acetyltransferase YP_003524605.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nmu:Nmul_A1226 ErfK/YbiS/YcfS/YnhG YP_003524606.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tmz:Tmz1t_2509 CMP/dCMP deaminase zinc-binding YP_003524607.1 KEGG: net:Neut_0487 channel protein, hemolysin III family protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_003524608.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bph:Bphy_0921 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003524609.1 KEGG: nmu:Nmul_A1946 PhoH-like protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc YP_003524610.1 PFAM: glutathione S-transferase domain; KEGG: neu:NE1952 glutathione S-transferase protein YP_003524611.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nmu:Nmul_A2110 protein-methionine-S-oxide reductase; PFAM: Methionine sulfoxide reductase B YP_003524612.1 KEGG: nmu:Nmul_A2111 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A YP_003524613.1 PFAM: YCII-related; KEGG: ecw:EcE24377A_1399 YciI-like protein YP_003524614.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003524615.1 KEGG: cvi:CV_0433 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003524616.1 KEGG: cti:RALTA_A3188 component of acridine efflux pump, multidrug efflux system; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_003524617.1 KEGG: har:HEAR2713 component of acridine efflux pump, AcrA-like; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003524618.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold domain protein; KEGG: app:CAP2UW1_0299 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524619.1 KEGG: dal:Dalk_3248 hypothetical protein YP_003524620.1 KEGG: nmu:Nmul_A0892 Dna-J like membrane chaperone protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003524621.1 KEGG: mei:Msip34_0712 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; Metal-dependent hydrolase HDOD; GAF domain protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain YP_003524622.1 KEGG: rfr:Rfer_3669 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003524623.1 KEGG: dge:Dgeo_0162 hypothetical protein YP_003524624.1 KEGG: lch:Lcho_0568 hypothetical protein YP_003524625.1 KEGG: blo:BL0436 FtsY signal recognition particle YP_003524626.1 KEGG: hypothetical protein LOC100123038 YP_003524627.1 KEGG: hypothetical LOC100070365; K04856 calcium channel, voltage-dependent, T type, alpha 1I subunit YP_003524628.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524630.1 KEGG: hch:HCH_04795 hypothetical protein YP_003524631.1 KEGG: bpy:Bphyt_6719 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; SMART: PAS domain containing protein YP_003524632.1 KEGG: GK16871 gene product from transcript GK16871-RA YP_003524633.1 KEGG: azo:azo2485 hypothetical protein YP_003524634.1 KEGG: bch:Bcen2424_0216 hypothetical protein YP_003524635.1 SMART: Rhodanese domain protein; KEGG: hna:Hneap_1028 rhodanese domain protein YP_003524636.1 KEGG: app:CAP2UW1_0304 CBS domain containing membrane protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_003524637.1 KEGG: afr:AFE_1436 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003524638.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: mms:mma_3559 hypothetical protein YP_003524639.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524640.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: mfa:Mfla_1031 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003524641.1 KEGG: azo:azo2076 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YP_003524642.1 KEGG: pat:Patl_0542 hypothetical protein YP_003524643.1 PFAM: spermine synthase; KEGG: azo:azo2053 spermidine synthase YP_003524644.1 KEGG: mfa:Mfla_1747 hypothetical protein YP_003524645.1 PFAM: protein of unknown function DUF190; KEGG: tbd:Tbd_1037 hypothetical protein YP_003524646.1 KEGG: tbd:Tbd_1036 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein YP_003524647.1 PFAM: protein of unknown function UPF0153; KEGG: tmz:Tmz1t_2001 protein of unknown function UPF0153 YP_003524648.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: net:Neut_1389 MiaB-like tRNA modifying enzyme YliG; SMART: Elongator protein 3/MiaB/NifB YP_003524649.1 PFAM: zinc/iron permease; KEGG: mei:Msip34_1703 zinc/iron permease YP_003524650.1 KEGG: app:CAP2UW1_2066 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; type IV pilus assembly PilZ; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003524651.1 PFAM: general substrate transporter; Kinin peptide, insect; KEGG: azo:azo2850 sugar transport protein YP_003524652.1 PFAM: protein of unknown function DUF152; KEGG: mei:Msip34_1707 protein of unknown function DUF152 YP_003524653.1 SMART: RNA-binding S4 domain protein; manually curated; TIGRFAM: pseudouridine synthase, RluA family; KEGG: nmu:Nmul_A1976 pseudouridine synthase, RluD; PFAM: pseudouridine synthase; RNA-binding S4 domain protein YP_003524654.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: app:CAP2UW1_3923 outer membrane assembly lipoprotein YfiO YP_003524655.1 PFAM: NUDIX hydrolase; KEGG: eba:ebA4673 related to NUDIX hydrolase YP_003524657.1 KEGG: mei:Msip34_0374 Cytochrome C class I YP_003524658.1 KEGG: mfa:Mfla_1127 hypothetical protein YP_003524659.1 KEGG: tbd:Tbd_2617 hypothetical protein YP_003524660.1 KEGG: abb:ABBFA_001861 DNA-binding protein HU-beta (NS1) (HU-1); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003524661.1 PFAM: peptidase M48 Ste24p; KEGG: sse:Ssed_3623 TPR repeat-containing Zn-dependent protease YP_003524662.1 KEGG: sse:Ssed_3622 hypothetical protein YP_003524663.1 KEGG: sse:Ssed_3621 adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003524664.1 PFAM: VacJ family lipoprotein; KEGG: tgr:Tgr7_2450 surface lipoprotein-like protein YP_003524665.1 PFAM: HtpX domain protein; peptidase M48 Ste24p; KEGG: nmu:Nmul_A1034 heat shock protein HtpX YP_003524666.1 PFAM: cytochrome B561; KEGG: tau:Tola_0555 cytochrome b561 YP_003524667.1 KEGG: eba:ebA5028 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein YP_003524668.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: mmb:Mmol_1522 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003524669.1 KEGG: tbd:Tbd_0963 ADP-glyceromanno-heptose 6-epimerase precursor; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_003524670.1 KEGG: dar:Daro_1285 D-alpha,beta-D-heptose 7-phosphate 1-kinase; TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein YP_003524671.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: mfa:Mfla_1067 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003524672.1 manually curated; KEGG: tmz:Tmz1t_3032 tetratricopeptide TPR_2 repeat protein YP_003524673.1 KEGG: nmu:Nmul_A2067 hypothetical protein YP_003524674.1 TIGRFAM: integration host factor, subunit beta; PFAM: histone family protein DNA-binding protein; KEGG: app:CAP2UW1_2898 integration host factor, subunit beta; SMART: histone family protein DNA-binding protein YP_003524675.1 KEGG: nmu:Nmul_A2069 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein YP_003524676.1 manually curated; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; cytidylate kinase; KEGG: dar:Daro_1279 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); cytidylate kinase region YP_003524677.1 KEGG: dar:Daro_1234 prephenate dehydrogenase; PFAM: prephenate dehydrogenase YP_003524678.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: nmu:Nmul_A2194 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003524679.1 KEGG: nmu:Nmul_A2193 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_003524680.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase, type II; KEGG: nmu:Nmul_A2192 chorismate mutase; SMART: Chorismate mutase YP_003524681.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: lch:Lcho_3015 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003524682.1 TIGRFAM: phosphoserine aminotransferase; KEGG: mei:Msip34_1534 phosphoserine aminotransferase; PFAM: aminotransferase class V YP_003524683.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: nmu:Nmul_A2189 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003524684.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: nmu:Nmul_A2186 3-demethylubiquinone-9 3-methyltransferase; PFAM: methyltransferase type 11 YP_003524685.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: neu:NE2546 HAD family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003524686.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dal:Dalk_1258 adenylate/guanylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003524687.1 KEGG: dtu:Dtur_1457 shikimate kinase YP_003524688.1 KEGG: dar:Daro_1151 type II secretion system protein E; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: AAA ATPase YP_003524689.1 PFAM: Aldose 1-epimerase; KEGG: tbd:Tbd_2730 dihydroxyacid dehydratase YP_003524690.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein; KEGG: cvi:CV_1378 elongation factor P; SMART: Elongation factor P YP_003524691.1 PFAM: Uncharacterised conserved protein UCP015557; KEGG: app:CAP2UW1_1557 hypothetical protein YP_003524692.1 PFAM: protein of unknown function DUF214; KEGG: pin:Ping_3708 ABC transporter permease protein YP_003524693.1 PFAM: protein of unknown function DUF214; KEGG: app:CAP2UW1_4287 protein of unknown function DUF214 YP_003524694.1 KEGG: nmu:Nmul_A0951 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524695.1 KEGG: neu:NE0828 HlyD family secretion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003524696.1 KEGG: net:Neut_1902 glycine oxidase ThiO; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase YP_003524697.1 KEGG: mms:mma_3360 type IV pilus biogenesis protein PilE YP_003524698.1 KEGG: mms:mma_3359 type IV pilus assembly related protein YP_003524699.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: mei:Msip34_2596 hypothetical protein YP_003524700.1 KEGG: mmb:Mmol_2271 hypothetical protein YP_003524701.1 KEGG: mms:mma_3356 type IV pilus assembly protein PilX YP_003524702.1 PFAM: PilC; KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1 YP_003524703.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: tbd:Tbd_1860 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein YP_003524704.1 KEGG: bph:Bphy_0573 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_003524705.1 manually curated; TIGRFAM: isoleucyl-tRNA synthetase; KEGG: net:Neut_1439 isoleucyl-tRNA synthetase YP_003524706.1 SMART: riboflavin kinase; manually curated; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; KEGG: nmu:Nmul_A2653 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase YP_003524707.1 KEGG: tmz:Tmz1t_0858 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003524708.1 KEGG: nmu:Nmul_A1055 peptidase U62, modulator of DNA gyrase; manually curated; PFAM: peptidase U62 modulator of DNA gyrase YP_003524709.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tbd:Tbd_0511 carbon-nitrogen hydrolase YP_003524710.1 KEGG: app:CAP2UW1_4067 hypothetical protein YP_003524711.1 KEGG: mfa:Mfla_1726 glutamate-ammonia-ligase adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase YP_003524712.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dar:Daro_3414 adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003524713.1 KEGG: app:CAP2UW1_2938 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_003524714.1 PFAM: Zinc finger, CHCC-type; KEGG: dar:Daro_3295 hypothetical protein YP_003524715.1 manually curated; TIGRFAM: lipopolysaccharide heptosyltransferase II; KEGG: cvi:CV_2092 ADP-heptose--LPS heptosyltransferase II; PFAM: glycosyl transferase family 9 YP_003524716.1 KEGG: tbd:Tbd_2138 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003524717.1 KEGG: rxy:Rxyl_0092 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003524718.1 SMART: Threonyl/alanyl tRNA synthetase SAD; TIGRFAM: alanyl-tRNA synthetase; KEGG: tmz:Tmz1t_1571 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD YP_003524719.1 KEGG: ctt:CtCNB1_4780 regulatory protein RecX; manually curated; PFAM: regulatory protein RecX YP_003524720.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: tbd:Tbd_2197 recombinase A; SMART: AAA ATPase YP_003524721.1 PFAM: CinA domain protein; KEGG: noc:Noc_0922 CinA-like protein YP_003524722.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: tbd:Tbd_1907 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003524723.1 KEGG: nmu:Nmul_A1906 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_003524724.1 KEGG: mei:Msip34_1541 colicin V production protein; manually curated; PFAM: Colicin V production protein YP_003524725.1 PFAM: sporulation domain protein; KEGG: mfa:Mfla_1694 sporulation related YP_003524726.1 TIGRFAM: FolC bifunctional protein; KEGG: mei:Msip34_1543 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003524727.1 KEGG: mca:MCA2175 hypothetical protein YP_003524728.1 KEGG: dar:Daro_0872 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase YP_003524729.1 TIGRFAM: tryptophan synthase, subunit alpha; KEGG: app:CAP2UW1_1231 tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain YP_003524730.1 KEGG: cvi:CV_2762 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein subunit beta YP_003524731.1 KEGG: cvi:CV_2763 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_003524732.1 PFAM: sodium/hydrogen exchanger; KEGG: sun:SUN_0480 NhaA family Na(+)/H(+) antiporter YP_003524733.1 TIGRFAM: tRNA pseudouridine synthase A; KEGG: lhk:LHK_01249 TruA; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003524734.1 KEGG: azo:azo1044 hypothetical protein YP_003524735.1 KEGG: tbd:Tbd_1918 hypothetical protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: peptidoglycan-binding lysin domain YP_003524736.1 SMART: Semialdehyde dehydrogenase NAD - binding; TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: rpf:Rpic12D_1817 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003524737.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mei:Msip34_1551 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003524738.1 KEGG: mei:Msip34_1552 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_003524739.1 KEGG: dar:Daro_3259 hypothetical protein YP_003524740.1 KEGG: mfa:Mfla_1705 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_003524741.1 KEGG: app:CAP2UW1_2224 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003524742.1 KEGG: app:CAP2UW1_2225 transcriptional regulator, AsnC family; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type YP_003524743.1 PFAM: major facilitator superfamily MFS_1; KEGG: nmu:Nmul_A1922 major facilitator transporter YP_003524744.1 PFAM: GrpE protein; KEGG: dar:Daro_0924 GrpE protein YP_003524745.1 KEGG: eba:ebA4794 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003524746.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: azo:azo1062 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein YP_003524747.1 PFAM: LemA family protein; KEGG: azo:azo3183 hypothetical protein YP_003524748.1 KEGG: lch:Lcho_2636 hypothetical protein YP_003524749.1 KEGG: azo:azo3184 hypothetical protein YP_003524750.1 PFAM: protein of unknown function DUF482; KEGG: reu:Reut_A2611 hypothetical protein YP_003524751.1 KEGG: azo:azo0461 hypothetical protein YP_003524752.1 PFAM: Lytic transglycosylase catalytic; KEGG: wsu:WS1277 membrane-bound lytic murein transglycosylase C YP_003524753.1 KEGG: mei:Msip34_1054 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524754.1 KEGG: sak:SAK_1192 chloride channel (ClC) family protein YP_003524755.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mei:Msip34_1038 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003524756.1 KEGG: cco:CCC13826_1539 flagellar biosynthetic protein YP_003524757.1 TIGRFAM: alanine racemase; KEGG: nmu:Nmul_A2115 alanine racemase; PFAM: alanine racemase domain protein YP_003524758.1 PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_1718 lysophospholipid transporter LplT YP_003524760.1 KEGG: app:CAP2UW1_2057 PGAP1 family protein YP_003524761.1 KEGG: mei:Msip34_2606 hypothetical protein YP_003524762.1 PFAM: peptidase M23; KEGG: app:CAP2UW1_3735 peptidase M23 YP_003524763.1 PFAM: conserved hypothetical protein; KEGG: app:CAP2UW1_1761 hypothetical protein YP_003524764.1 KEGG: gau:GAU_1762 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_003524765.1 KEGG: vvy:VVA0153 hypothetical protein YP_003524766.1 KEGG: rxy:Rxyl_0483 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); PFAM: capsule synthesis protein, CapA; SMART: capsule synthesis protein, CapA YP_003524767.1 KEGG: tbd:Tbd_1768 hypothetical protein YP_003524768.1 PFAM: UspA domain protein; KEGG: nmu:Nmul_A0904 hypothetical protein YP_003524769.1 KEGG: rfr:Rfer_3315 ATP-dependent protease La YP_003524770.1 TIGRFAM: ribosomal subunit interface protein; KEGG: tbd:Tbd_1447 SSU ribosomal protein S30P / sigma 54 modulation protein YP_003524771.1 KEGG: nmu:Nmul_A1168 hypothetical protein YP_003524772.1 KEGG: nmu:Nmul_A0912 hypothetical protein YP_003524773.1 KEGG: app:CAP2UW1_1951 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase YP_003524774.1 KEGG: dac:Daci_4264 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003524775.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE domain protein; MASE1 domain protein; PAS fold domain protein; PAS fold-3 domain protein; KEGG: tgr:Tgr7_1851 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524776.1 PFAM: metallophosphoesterase; KEGG: glo:Glov_2809 metallophosphoesterase YP_003524777.1 KEGG: rpi:Rpic_2911 type 4 fimbrial biogenesis PilY1-related protein signal peptide YP_003524778.1 KEGG: rme:Rmet_5688 transmembrane protein YP_003524779.1 KEGG: rpi:Rpic_2913 type 4 fimbrial biogenesis PilW-related protein transmembrane YP_003524780.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: rso:RSc2678 type 4 fimbrial biogenesis related transmembrane protein YP_003524781.1 KEGG: reu:Reut_A0400 N-terminal methylation site YP_003524782.1 KEGG: rpi:Rpic_2916 type 4 fimbrial biogenesis transmembrane protein YP_003524783.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB; SMART: ATP-binding region ATPase domain protein YP_003524784.1 PFAM: lipolytic protein G-D-S-L family; KEGG: nmc:NMC1592 lipase YP_003524785.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: rfr:Rfer_3654 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524786.1 KEGG: spl:Spea_1349 flagellar hook-associated protein FlgK YP_003524787.1 KEGG: pna:Pnap_0159 hypothetical protein YP_003524788.1 KEGG: psa:PST_1449 lipoprotein YP_003524789.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein YP_003524790.1 KEGG: bte:BTH_I0090 hypothetical protein YP_003524791.1 KEGG: tbd:Tbd_0067 hypothetical protein YP_003524792.1 PFAM: protein of unknown function UPF0047; KEGG: dda:Dd703_0725 protein of unknown function UPF0047 YP_003524793.1 PFAM: protein of unknown function DUF336; KEGG: tgr:Tgr7_2753 hypothetical protein YP_003524794.1 KEGG: azo:azo0016 hypothetical protein YP_003524795.1 KEGG: rpf:Rpic12D_1115 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003524797.1 PFAM: DoxX family protein; KEGG: mmb:Mmol_0999 DoxX family protein YP_003524798.1 KEGG: tbd:Tbd_0600 hypothetical protein YP_003524799.1 KEGG: app:CAP2UW1_1971 hypothetical protein YP_003524800.1 KEGG: rru:Rru_A3046 radical SAM family protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003524801.1 manually curated; KEGG: mar:MAE_01690 hypothetical protein YP_003524802.1 KEGG: mar:MAE_01680 hypothetical protein YP_003524803.1 PFAM: methyltransferase type 11; KEGG: nfa:nfa1190 hypothetical protein YP_003524804.1 PFAM: SMC domain protein; KEGG: bra:BRADO2738 hypothetical protein YP_003524805.1 PFAM: NERD domain protein; KEGG: reh:H16_A3391 hypothetical protein YP_003524806.1 KEGG: eba:ebA2196 hypothetical protein YP_003524807.1 KEGG: tmz:Tmz1t_2127 hypothetical protein YP_003524808.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4745 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein YP_003524809.1 PFAM: plasmid maintenance system killer; KEGG: plu:plu3002 hypothetical protein YP_003524810.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: cyc:PCC7424_0118 PAS/PAC sensor hybrid histidine kinase; SMART: PAC repeat-containing protein; PAS domain containing protein YP_003524811.1 KEGG: hch:HCH_00592 hypothetical protein YP_003524812.1 PFAM: peptidase S24/S26A/S26B, conserved region; KEGG: tbd:Tbd_1516 hypothetical protein YP_003524813.1 KEGG: app:CAP2UW1_3892 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin YP_003524814.1 PFAM: radical SAM domain protein; KEGG: mpt:Mpe_A3613 radical SAM family Fe-S oxidoreductase YP_003524815.1 PFAM: membrane protein of unknown function; KEGG: nmu:Nmul_A1137 membrane protein of unknown function YP_003524816.1 KEGG: vap:Vapar_1697 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease YP_003524817.1 KEGG: pau:PA14_49860 hypothetical protein YP_003524818.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: dar:Daro_2727 AAA ATPase, central region:Clp, N terminal; SMART: AAA ATPase YP_003524819.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: mei:Msip34_0611 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003524820.1 KEGG: tmz:Tmz1t_0651 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain YP_003524821.1 KEGG: GJ12665 gene product from transcript GJ12665-RA YP_003524822.1 PFAM: methyltransferase type 11; KEGG: glo:Glov_0563 methyltransferase type 11 YP_003524823.1 PFAM: methyltransferase type 11; KEGG: tbd:Tbd_2330 hypothetical protein YP_003524824.1 PFAM: auxin efflux carrier; KEGG: cpb:Cphamn1_0469 auxin efflux carrier YP_003524825.1 KEGG: pph:Ppha_0637 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat YP_003524826.1 KEGG: mfa:Mfla_1127 hypothetical protein YP_003524827.1 KEGG: mfa:Mfla_1126 hypothetical protein YP_003524828.1 KEGG: sil:SPO3260 methyltransferase,-like protein YP_003524829.1 KEGG: pol:Bpro_0709 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003524830.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rmr:Rmar_2228 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003524831.1 PFAM: protein of unknown function DUF535; KEGG: yen:YE1513 virulence factor YP_003524832.1 TIGRFAM: threonine synthase; KEGG: dar:Daro_2382 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein subunit beta YP_003524833.1 KEGG: azo:azo2081 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding YP_003524834.1 PFAM: aminotransferase class I and II; KEGG: rme:Rmet_1967 aminotransferase AlaT YP_003524835.1 PFAM: protein of unknown function DUF498; KEGG: cvi:CV_0994 hypothetical protein YP_003524836.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: tgr:Tgr7_1491 MoxR protein YP_003524837.1 PFAM: protein of unknown function DUF58; KEGG: tmz:Tmz1t_3010 protein of unknown function DUF58 YP_003524838.1 KEGG: app:CAP2UW1_1368 transglutaminase domain protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein YP_003524839.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: nmu:Nmul_A1944 6-pyruvoyl tetrahydropterin synthase YP_003524840.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: azo:azo2059 REC/GGDEF-domain-containing protein; SMART: GGDEF domain containing protein; response regulator receiver YP_003524841.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: dar:Daro_4048 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003524842.1 manually curated; TIGRFAM: phage SPO1 DNA polymerase-related protein; KEGG: nmu:Nmul_A2121 phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily YP_003524843.1 KEGG: mfa:Mfla_0413 SSU ribosomal protein S18P alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003524844.1 PFAM: peptidase M22 glycoprotease; KEGG: net:Neut_1298 peptidase M22, glycoprotease YP_003524845.1 TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; KEGG: bgl:bglu_1g13340 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003524846.1 KEGG: dar:Daro_1973 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003524847.1 KEGG: rfr:Rfer_3391 PAS/PAC sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein YP_003524848.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: nmu:Nmul_A0639 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_003524849.1 KEGG: pna:Pnap_1350 hypothetical protein YP_003524850.1 PFAM: protein of unknown function DUF2283; KEGG: pna:Pnap_1349 hypothetical protein YP_003524852.1 PFAM: NmrA family protein; KEGG: pna:Pnap_0622 NmrA family protein YP_003524853.1 PFAM: helix-turn-helix HxlR type; KEGG: gbm:Gbem_2876 transcriptional regulator, HxlR family YP_003524854.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: nmu:Nmul_A0636 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003524855.1 KEGG: rpb:RPB_0055 hypothetical protein YP_003524856.1 KEGG: dar:Daro_0964 ribonucleotide reductase large subunit; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit YP_003524857.1 PFAM: auxin efflux carrier; KEGG: tgr:Tgr7_1750 auxin efflux carrier YP_003524858.1 KEGG: mmb:Mmol_1279 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003524859.1 PFAM: HI0933 family protein; KEGG: reu:Reut_A2458 hypothetical protein YP_003524860.1 PFAM: cytochrome B561; KEGG: rso:RSc0199 cytochrome b561 cytochrome transmembrane protein YP_003524861.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: neu:NE1499 hypothetical protein YP_003524862.1 KEGG: mei:Msip34_2724 hypothetical protein YP_003524863.1 PFAM: Disulphide bond formation protein DsbB; KEGG: noc:Noc_2599 disulphide bond formation protein DsbB YP_003524864.1 KEGG: cvi:CV_1087 hypothetical protein; TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528 YP_003524865.1 KEGG: mmb:Mmol_1678 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin YP_003524866.1 KEGG: tbd:Tbd_1168 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70 YP_003524867.1 TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: eba:ebA6397 co-chaperone HscB; SMART: heat shock protein DnaJ domain protein YP_003524868.1 KEGG: dar:Daro_1952 HesB/YadR/YfhF:iron-sulphur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003524869.1 KEGG: eba:ebA6400 scaffold protein; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein YP_003524870.1 TIGRFAM: cysteine desulfurase IscS; KEGG: cti:RALTA_A1139 cysteine desulfurase; PFAM: aminotransferase class V YP_003524871.1 KEGG: app:CAP2UW1_2019 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003524872.1 KEGG: tbd:Tbd_1162 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase YP_003524873.1 manually curated; TIGRFAM: RNA methyltransferase, TrmH family, group 1; KEGG: neu:NE1953 rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_003524874.1 PFAM: inositol monophosphatase; KEGG: nmu:Nmul_A0672 inositol-1(or 4)-monophosphatase YP_003524875.1 PFAM: phosphate transporter; KEGG: dar:Daro_0679 phosphate transporter YP_003524876.1 KEGG: dar:Daro_0678 phosphate transport regulator-like protein YP_003524877.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: nmu:Nmul_A0670 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003524878.1 KEGG: xfa:XF2414 hypothetical protein YP_003524879.1 KEGG: mgm:Mmc1_3247 hypothetical protein YP_003524880.1 PFAM: protein of unknown function UPF0061; KEGG: ddr:Deide_1p00960 hypothetical protein YP_003524881.1 KEGG: eba:ebA6177 hypothetical protein YP_003524882.1 PFAM: protein of unknown function DUF1653; KEGG: bph:Bphy_3429 hypothetical protein YP_003524883.1 PFAM: protein of unknown function DUF1697; KEGG: gur:Gura_3525 hypothetical protein YP_003524885.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cts:Ctha_1456 metal dependent phosphohydrolase YP_003524886.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; Autoinducer-binding domain protein; regulatory protein LuxR; GGDEF domain containing protein; KEGG: tau:Tola_0479 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; regulatory protein LuxR YP_003524887.1 KEGG: shl:Shal_1009 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase subunit alpha YP_003524888.1 KEGG: dal:Dalk_5251 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_003524889.1 KEGG: tbd:Tbd_2013 hypothetical protein YP_003524890.1 KEGG: mmb:Mmol_0239 diguanylate cyclase YP_003524891.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nmu:Nmul_A0355 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003524892.1 KEGG: protein kinase domain containing protein YP_003524893.1 KEGG: hypothetical LOC100006405 YP_003524894.1 KEGG: azo:azo2552 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_003524895.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: aeh:Mlg_2564 NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_003524896.1 KEGG: hypothetical protein YP_003524897.1 KEGG: tbd:Tbd_1054 hypothetical protein YP_003524898.1 TIGRFAM: signal peptidase I; KEGG: cvi:CV_3687 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region YP_003524899.1 KEGG: net:Neut_2023 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) YP_003524900.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mei:Msip34_1806 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003524901.1 KEGG: nmu:Nmul_A1143 cupin region; PFAM: cupin; SMART: transcription factor jumonji jmjC domain protein YP_003524902.1 KEGG: mei:Msip34_1804 hypothetical protein YP_003524903.1 SMART: beta-lactamase domain protein; KEGG: nmu:Nmul_A1139 beta-lactamase-like YP_003524904.1 KEGG: rme:Rmet_1069 transmembrane protein YP_003524905.1 KEGG: neu:NE2403 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003524906.1 KEGG: cyn:Cyan7425_2808 FeoA family protein; PFAM: FeoA family protein; SMART: FeoA family protein YP_003524907.1 manually curated; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; KEGG: mca:MCA1097 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein YP_003524908.1 KEGG: bwe:BcerKBAB4_0603 hypothetical protein YP_003524909.1 PFAM: YfaZ family protein; KEGG: tgr:Tgr7_2505 YfaZ family protein YP_003524910.1 PFAM: protein of unknown function UPF0005; KEGG: neu:NE1018 hypothetical protein YP_003524911.1 PFAM: HopJ type III effector protein; KEGG: cja:CJA_1687 type III effector HopPmaJ(Pto) YP_003524912.1 KEGG: cli:Clim_0691 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003524913.1 KEGG: nmu:Nmul_A2216 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM YP_003524914.1 PFAM: 3'-5' exonuclease, PolB-like; KEGG: nmu:Nmul_A2217 hypothetical protein YP_003524915.1 TIGRFAM: LexA repressor; KEGG: mei:Msip34_2108 LexA repressor; PFAM: peptidase S24/S26A/S26B, conserved region YP_003524916.1 KEGG: dar:Daro_2475 hypothetical protein YP_003524917.1 KEGG: dar:Daro_3825 hypothetical protein YP_003524918.1 PFAM: Hemolysin-type calcium-binding region; KEGG: rfr:Rfer_2715 VCBS YP_003524919.1 KEGG: tgr:Tgr7_1802 protein of unknown function DUF1568 YP_003524920.1 KEGG: glo:Glov_2674 hypothetical protein YP_003524921.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: gur:Gura_4141 serine-type D-Ala-D-Ala carboxypeptidase YP_003524922.1 manually curated; PFAM: hypothetical protein; KEGG: gur:Gura_1321 hypothetical protein; SMART: Tetratricopeptide repeat YP_003524923.1 PFAM: peptidase M48 Ste24p; KEGG: mmb:Mmol_1014 peptidase M48 Ste24p YP_003524924.1 PFAM: SH3 type 3 domain protein; KEGG: mei:Msip34_1735 SH3 type 3 domain protein YP_003524925.1 PFAM: CHASE2 domain protein; KEGG: mei:Msip34_1734 CHASE2 sensor protein YP_003524926.1 KEGG: dar:Daro_3212 manganese and iron superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like YP_003524927.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: cvi:CV_3097 lipoyl synthase; PFAM: radical SAM domain protein YP_003524928.1 KEGG: hypothetical protein YP_003524929.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: tbd:Tbd_2221 hypothetical protein YP_003524930.1 PFAM: DNA alkylation repair enzyme; KEGG: pph:Ppha_1822 DNA alkylation repair enzyme YP_003524931.1 PFAM: class I peptide chain release factor; KEGG: mms:mma_0042 hypothetical protein YP_003524932.1 KEGG: mms:mma_0559 hypothetical protein YP_003524933.1 KEGG: mms:mma_1074 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003524934.1 KEGG: azo:azo0499 cyclohexadienyl dehydratase; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003524935.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; KEGG: mmb:Mmol_0423 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524936.1 KEGG: oca:OCAR_5411 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003524937.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lil:LA3534 hypothetical protein YP_003524938.1 KEGG: aba:Acid345_3072 DGPFAETKE domain-containing protein YP_003524939.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rfr:Rfer_2843 bifunctional deaminase-reductase-like YP_003524940.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_1126 activator of HSP90 ATPase-like protein YP_003524941.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: oca:OCAR_5415 activator of HSP90 ATPase 1 family protein YP_003524942.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_1085 deaminase-reductase domain-containing protein YP_003524943.1 PFAM: polyketide cyclase/dehydrase; KEGG: vap:Vapar_4411 hypothetical protein YP_003524944.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rca:Rcas_4095 3-demethylubiquinone-9 3-methyltransferase YP_003524945.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: dfe:Dfer_1353 bifunctional deaminase-reductase domain protein YP_003524946.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: tbd:Tbd_1204 PhnB protein YP_003524947.1 KEGG: nmu:Nmul_A1554 glyoxalase/bleomycin resistance protein/dioxygenase YP_003524948.1 PFAM: protein of unknown function DUF924; KEGG: cyn:Cyan7425_2734 protein of unknown function DUF924 YP_003524949.1 KEGG: mms:mma_0086 Mg-protoporphyrin IX monomethyl ester oxidative cyclase; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003524950.1 KEGG: swp:swp_2189 hypothetical protein swp_2189 YP_003524951.1 PFAM: transposase IS3/IS911 family protein; KEGG: xcv:XCV0619 transposase YP_003524952.1 PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit YP_003524953.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: amr:AM1_4494 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_003524955.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: maq:Maqu_2268 signal transduction protein YP_003524956.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; hemerythrin HHE cation binding domain protein; KEGG: sun:SUN_1317 hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524957.1 KEGG: eba:ebA3896 hypothetical protein YP_003524958.1 manually curated; PFAM: von Willebrand factor type A; KEGG: tbd:Tbd_2621 rubisco activation protein CbbO; SMART: von Willebrand factor type A YP_003524959.1 PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: neu:NE1919 nitric oxide reductase NorQ protein YP_003524960.1 KEGG: nmu:Nmul_A1106 hypothetical protein YP_003524961.1 PFAM: histidine triad (HIT) protein; KEGG: pmx:PERMA_0670 protein hit YP_003524962.1 KEGG: har:HEAR0880 serine/threonine protein kinase; manually curated; PFAM: aminoglycoside phosphotransferase YP_003524963.1 PFAM: protein of unknown function DUF1415; KEGG: lch:Lcho_2114 hypothetical protein YP_003524964.1 KEGG: bcj:BCAL0933 ATP-dependent RNA helicase 1; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003524965.1 KEGG: neu:NE1823 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related YP_003524966.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: bxe:Bxe_A4135 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003524967.1 KEGG: mei:Msip34_2012 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25-like YP_003524968.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: tbd:Tbd_0387 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003524969.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: app:CAP2UW1_2733 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003524970.1 KEGG: nmu:Nmul_A0587 outer membrane lipoprotein LolB; TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB YP_003524971.1 KEGG: nmu:Nmul_A0586 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat YP_003524972.1 manually curated; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; KEGG: mms:mma_0285 outer membrane protein, TolC-like; PFAM: outer membrane efflux protein YP_003524973.1 KEGG: mfa:Mfla_0682 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003524974.1 KEGG: nmu:Nmul_A0584 ABC-2 type transport system permease protein YP_003524975.1 PFAM: ABC-type uncharacterised transport system; KEGG: nmu:Nmul_A0583 hypothetical protein YP_003524976.1 SMART: Formamidopyrimidine-DNA glycosylase catalytic domain protein; TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: cvi:CV_4062 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; zinc finger Fpg domain protein YP_003524977.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; hemerythrin HHE cation binding domain protein; KEGG: tau:Tola_1998 diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003524978.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0299 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003524979.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: azo:azo0762 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase YP_003524980.1 PFAM: protein of unknown function methylase manually curated; KEGG: cvi:CV_4202 hypothetical protein; TIGRFAM: methyltransferase YP_003524981.1 PFAM: peptidase M16 domain protein; KEGG: mei:Msip34_1921 peptidase M16 domain protein YP_003524982.1 PFAM: peptidase M16 domain protein; KEGG: nmu:Nmul_A2737 peptidase M16-like YP_003524983.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: mei:Msip34_1923 signal recognition particle-docking protein FtsY; SMART: AAA ATPase YP_003524984.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: cvi:CV_4204 cell division ATP-binding protein FtsE, ABC transporter ATP-binding protein; SMART: AAA ATPase YP_003524985.1 PFAM: protein of unknown function DUF214; KEGG: nmu:Nmul_A2740 hypothetical protein YP_003524986.1 KEGG: aeh:Mlg_0407 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003524987.1 KEGG: noc:Noc_2967 hypothetical protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003524988.1 PFAM: globin; KEGG: mca:MCA2507 hypothetical protein YP_003524989.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: mca:MCA2508 oxygenase YP_003524990.1 KEGG: tex:Teth514_2092 DNA internalization-related competence protein ComEC/Rec2 YP_003524991.1 KEGG: mmb:Mmol_1255 methyl-accepting chemotaxis sensory transducer YP_003524992.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: nmu:Nmul_A2415 peptidase U62, modulator of DNA gyrase YP_003524993.1 PFAM: protein of unknown function DUF615; KEGG: net:Neut_0689 hypothetical protein YP_003524994.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dar:Daro_4009 PAS; SMART: PAC repeat-containing protein; PAS domain containing protein YP_003524995.1 KEGG: azo:azo2859 carboxylesterase; PFAM: phospholipase/carboxylesterase YP_003524996.1 KEGG: dar:Daro_0594 hypothetical protein YP_003524997.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: neu:NE2219 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003524998.1 KEGG: nmu:Nmul_A2708 arginyl-tRNA-protein transferase; PFAM: Arginine-tRNA-protein transferase domain protein YP_003524999.1 manually curated; KEGG: mei:Msip34_1113 small-conductance mechanosensitive channel YP_003525000.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: har:HEAR2444 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase YP_003525001.1 KEGG: dar:Daro_3558 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003525002.1 KEGG: dar:Daro_3557 response regulator receiver:transcriptional regulatory protein, C-terminal; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein YP_003525003.1 PFAM: K potassium transporter; KEGG: ctt:CtCNB1_2217 K+ potassium transporter YP_003525004.1 KEGG: tbd:Tbd_2015 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003525005.1 KEGG: tbd:Tbd_2016 electron transport complex protein RnfB; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003525006.1 KEGG: tmz:Tmz1t_3234 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Soluble ligand binding domain YP_003525007.1 KEGG: mmb:Mmol_1957 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003525008.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: app:CAP2UW1_2955 electron transport complex, RnfABCDGE type, G subunit; SMART: FMN-binding domain protein YP_003525009.1 KEGG: tbd:Tbd_2020 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003525010.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; Helix-hairpin-helix DNA-binding class 1; TIGRFAM: endonuclease III; KEGG: net:Neut_0644 endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop YP_003525011.1 PFAM: Domain of unknown function DUF1841; KEGG: nmu:Nmul_A2703 hypothetical protein YP_003525012.1 KEGG: bcj:BCAL3286 cobalamin adenosyltransferase protein; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase YP_003525013.1 KEGG: tmz:Tmz1t_2776 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003525014.1 TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: cti:RALTA_A1022 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_003525015.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: dar:Daro_3073 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003525016.1 KEGG: mmb:Mmol_0617 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_003525017.1 KEGG: nmu:Nmul_A0474 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region YP_003525018.1 KEGG: dar:Daro_3076 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003525019.1 KEGG: nmu:Nmul_A1052 hypothetical protein YP_003525020.1 KEGG: nmu:Nmul_A1053 hypothetical protein YP_003525021.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mei:Msip34_0237 permease YjgP/YjgQ family protein YP_003525022.1 PFAM: permease YjgP/YjgQ family protein; KEGG: app:CAP2UW1_4126 permease YjgP/YjgQ family protein YP_003525023.1 KEGG: mei:Msip34_0239 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_003525024.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: nmu:Nmul_A0745 DNA polymerase III chi subunit, HolC YP_003525025.1 KEGG: Dzip1l; DAZ interacting protein 1-like YP_003525026.1 KEGG: mfa:Mfla_0091 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_003525027.1 PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein YP_003525028.1 KEGG: afr:AFE_2558 rhodanese-like domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003525029.1 KEGG: app:CAP2UW1_0788 cyclic nucleotide-binding protein; PFAM: serine/threonine-protein kinase-like domain; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003525030.1 KEGG: nmu:Nmul_A2537 peptidase M48, Ste24p; manually curated; PFAM: peptidase M48 Ste24p YP_003525031.1 PFAM: high-affinity nickel-transporter; KEGG: rme:Rmet_1533 high-affinity nickel-transporter YP_003525032.1 KEGG: app:CAP2UW1_0735 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003525033.1 KEGG: rfr:Rfer_4099 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_003525034.1 KEGG: dar:Daro_3967 hydrogenase expression/formation protein (HUPF/HYPC); TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_003525035.1 KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein YP_003525036.1 KEGG: rme:Rmet_1536 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_003525037.1 KEGG: rfr:Rfer_4095 hydrogenase nickel insertion protein HypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA YP_003525038.1 KEGG: azo:azo3798 hydrogenase expression/formation protein HupK YP_003525039.1 KEGG: dar:Daro_2933 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003525040.1 KEGG: csa:Csal_0961 glucose/sorbosone dehydrogenases-like protein YP_003525041.1 PFAM: protein of unknown function DUF1332; KEGG: rfr:Rfer_1818 hypothetical protein YP_003525042.1 PFAM: SlyX family protein; KEGG: mms:mma_3591 SlyX protein YP_003525043.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: gur:Gura_3598 death-on-curing family protein YP_003525044.1 KEGG: rfr:Rfer_0945 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding YP_003525045.1 PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA67 hypothetical protein YP_003525046.1 KEGG: sfr:Sfri_4016 hypothetical protein YP_003525047.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: ava:Ava_3502 type I site-specific deoxyribonuclease HsdR; SMART: DEAD-like helicase YP_003525048.1 PFAM: restriction modification system DNA specificity domain; KEGG: dar:Daro_1307 restriction modification system DNA specificity subunit YP_003525049.1 PFAM: N-6 DNA methylase; KEGG: ava:Ava_3498 N-6 DNA methylase YP_003525050.1 KEGG: pst:PSPTO_0023 hypothetical protein YP_003525051.1 KEGG: lch:Lcho_4294 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003525052.1 KEGG: cko:CKO_02731 cytochrome o ubiquinol oxidase subunit III YP_003525053.1 KEGG: gym:GYMC10_4040 multi-sensor hybrid histidine kinase YP_003525054.1 PFAM: protein of unknown function DUF1458; KEGG: nmu:Nmul_A2249 hypothetical protein YP_003525055.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bfr:BF3852 hypothetical protein YP_003525056.1 KEGG: nmu:Nmul_A2057 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 region 3 domain protein; sigma-70 1.1 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2 YP_003525057.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase, DnaB-helicase binding domain; DNA primase DnaG DnaB-binding; KEGG: dar:Daro_0527 DNA primase; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase DnaG DnaB-binding YP_003525058.1 PFAM: protein of unknown function; KEGG: mms:mma_0491 hypothetical protein YP_003525059.1 KEGG: nmu:Nmul_A2060 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_003525060.1 KEGG: hypothetical protein YP_003525061.1 SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: nmu:Nmul_A0502 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_003525062.1 PFAM: peptidase M23; KEGG: mei:Msip34_0066 peptidase M23 YP_003525063.1 PFAM: protein of unknown function UPF0075; KEGG: nmu:Nmul_A0555 anhydro-N-acetylmuramic acid kinase YP_003525064.1 KEGG: app:CAP2UW1_3027 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003525065.1 PFAM: protein of unknown function DUF583; KEGG: dar:Daro_0652 hypothetical protein YP_003525066.1 KEGG: nmu:Nmul_A0558 hypothetical protein YP_003525067.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: cvi:CV_3695 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003525068.1 PFAM: ribosomal protein S9; KEGG: nmu:Nmul_A0560 30S ribosomal protein S9 YP_003525069.1 KEGG: azo:azo2760 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_003525070.1 PFAM: carbohydrate kinase, FGGY-like; KEGG: fal:FRAAL4566 glycerol kinase YP_003525071.1 PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_4611 FAD dependent oxidoreductase YP_003525072.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nth:Nther_1117 glycerophosphodiester phosphodiesterase YP_003525073.1 KEGG: dat:HRM2_34910 hypothetical protein YP_003525074.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: mms:mma_1158 hypothetical protein; SMART: EAL domain protein YP_003525076.1 KEGG: har:HEAR2735 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003525077.1 KEGG: mmb:Mmol_0489 ornithine-acyl(acyl carrier protein) N-acyltransferase YP_003525078.1 PFAM: diacylglycerol kinase; KEGG: mfa:Mfla_0788 diacylglycerol kinase YP_003525079.1 PFAM: glycosyl transferase group 1; KEGG: lch:Lcho_3607 glycosyl transferase group 1 YP_003525080.1 KEGG: mmb:Mmol_1697 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_003525081.1 KEGG: lhk:LHK_01618 probable methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003525083.1 KEGG: mfa:Mfla_0787 hypothetical protein YP_003525084.1 PFAM: protein of unknown function DUF218; KEGG: nmu:Nmul_A0343 hypothetical protein YP_003525085.1 PFAM: OsmC family protein; KEGG: mei:Msip34_0434 OsmC family protein YP_003525086.1 KEGG: cvi:CV_3371 hypothetical protein YP_003525087.1 KEGG: tgr:Tgr7_2091 hypothetical protein YP_003525088.1 PFAM: protein of unknown function DUF433; KEGG: cyn:Cyan7425_0500 protein of unknown function DUF433 YP_003525089.1 PFAM: porin Gram-negative type; KEGG: eba:ebA2143 porin precursor transmembrane protein YP_003525090.1 PFAM: porin Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_003525091.1 KEGG: azo:azo2167 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilizing protein; PEP-utilising protein mobile region YP_003525092.1 KEGG: sma:SAV_5212 transcriptional regulator YP_003525093.1 KEGG: hha:Hhal_0061 RnfA-Nqr electron transport subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003525094.1 KEGG: lhk:LHK_01439 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003525095.1 KEGG: hha:Hhal_0063 FMN-binding domain-containing protein; PFAM: FMN-binding domain protein; SMART: FMN-binding domain protein YP_003525096.1 KEGG: hha:Hhal_0064 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003525097.1 KEGG: hha:Hhal_0065 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Soluble ligand binding domain YP_003525098.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; KEGG: hha:Hhal_0066 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003525099.1 PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hha:Hhal_0067 Fe-S cluster domain-containing protein YP_003525100.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aeh:Mlg_1449 LysR family transcriptional regulator YP_003525101.1 PFAM: protein of unknown function DUF299; KEGG: dar:Daro_1758 hypothetical protein YP_003525102.1 KEGG: pol:Bpro_4144 Na+/solute symporter; TIGRFAM: sodium symporter protein; PFAM: Na+/solute symporter YP_003525103.1 TIGRFAM: solute symporter protein; KEGG: app:CAP2UW1_3750 membrane protein YP_003525104.1 KEGG: dar:Daro_0429 response regulator receiver:transcriptional regulatory protein, C-terminal; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein YP_003525105.1 KEGG: vap:Vapar_6289 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003525106.1 KEGG: mgm:Mmc1_0336 transmembrane region and signal peptide prediction YP_003525107.1 PFAM: NapC/NirT Cytochrome C domain protein; KEGG: dar:Daro_2579 NapC/NirT Cytochrome C, N-terminal YP_003525108.1 TIGRFAM: decaheme-associated outer membrane protein, MtrB/PioB family; KEGG: dar:Daro_1403 hypothetical protein YP_003525109.1 KEGG: dar:Daro_1402 double CXXCH motif-containing protein; TIGRFAM: decaheme c-type cytochrome, DmsE family; cytochrome C family protein; PFAM: doubled CXXCH domain protein YP_003525110.1 PFAM: Cytochrome C class I; KEGG: dar:Daro_1401 Cytochrome C, class I YP_003525111.1 KEGG: ara:Arad_9104 two-component sensor histidine kinase protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003525112.1 KEGG: rsk:RSKD131_3304 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003525113.1 KEGG: mag:amb2727 symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003525114.1 PFAM: protein of unknown function DUF485; KEGG: cvi:CV_3280 hypothetical protein YP_003525115.1 TIGRFAM: DNA polymerase III, subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: tbd:Tbd_0089 exonuclease; SMART: Exonuclease YP_003525116.1 KEGG: tbd:Tbd_0090 CBS signal-transduction protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein YP_003525117.1 KEGG: azo:azo3322 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase YP_003525118.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: nmu:Nmul_A0514 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_003525119.1 KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003525120.1 KEGG: tbd:Tbd_1729 hypothetical protein YP_003525121.1 KEGG: rfr:Rfer_0168 hypothetical protein YP_003525122.1 PFAM: regulatory protein TetR; KEGG: azc:AZC_4699 transcriptional regulator YP_003525123.1 KEGG: sfu:Sfum_2390 secretion protein HlyD family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003525124.1 KEGG: sfu:Sfum_2391 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003525125.1 KEGG: hypothetical protein YP_003525126.1 PFAM: ABC transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator YP_003525127.1 PFAM: ABC transporter; KEGG: sfu:Sfum_2393 ABC transporter YP_003525128.1 KEGG: dar:Daro_4122 inner membrane protein YP_003525129.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: lch:Lcho_3018 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003525130.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ote:Oter_0469 endonuclease/exonuclease/phosphatase YP_003525131.1 KEGG: nmu:Nmul_A1961 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_003525132.1 TIGRFAM: thymidylate synthase; KEGG: tbd:Tbd_2040 thymidylate synthase; PFAM: thymidylate synthase YP_003525133.1 PFAM: S23 ribosomal protein; KEGG: tbd:Tbd_0653 hypothetical protein YP_003525134.1 KEGG: mmb:Mmol_1530 dihydrofolate reductase; PFAM: dihydrofolate reductase region YP_003525135.1 KEGG: rfr:Rfer_2163 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20 YP_003525136.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; KEGG: csa:Csal_0236 HAD family hydrolase; PFAM: trehalose-phosphatase YP_003525137.1 PFAM: glycoside hydrolase 15-related; KEGG: glo:Glov_1816 glycoside hydrolase 15-related YP_003525138.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rlt:Rleg2_2731 sodium/calcium exchanger membrane region YP_003525139.1 KEGG: dar:Daro_3555 chromate transporter YP_003525140.1 KEGG: tcx:Tcr_2104 hypothetical protein YP_003525141.1 PFAM: iron permease FTR1; KEGG: pna:Pnap_3854 iron permease FTR1 YP_003525142.1 KEGG: tcx:Tcr_2102 hypothetical protein YP_003525143.1 PFAM: ferric-uptake regulator; KEGG: mei:Msip34_1882 ferric uptake regulator, Fur family YP_003525144.1 PFAM: peptidase U32; KEGG: lhk:LHK_02651 probable collagenase YP_003525145.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein YP_003525147.1 KEGG: cai:Caci_3165 ricin B lectin YP_003525148.1 KEGG: dar:Daro_0985 hypothetical protein YP_003525149.1 KEGG: dar:Daro_0984 phosphoserine aminotransferase; PFAM: aminotransferase class V YP_003525150.1 KEGG: mag:amb0272 hypothetical protein YP_003525151.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: tgr:Tgr7_3068 suppressor for copper-sensitivity D YP_003525152.1 KEGG: net:Neut_2524 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003525153.1 KEGG: mms:mma_1191 arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003525154.1 KEGG: lhk:LHK_01827 hypothetical protein YP_003525155.1 TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: app:CAP2UW1_4029 deoxycytidine triphosphate deaminase YP_003525156.1 KEGG: dar:Daro_0574 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, subunit beta; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein YP_003525157.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tcu:Tcur_2047 pyridine nucleotide-disulphide oxidoreductase dimerization region YP_003525158.1 KEGG: mba:Mbar_A0447 hypothetical protein YP_003525159.1 SMART: helix-turn-helix domain protein; KEGG: gur:Gura_1300 helix-turn-helix domain-containing protein YP_003525160.1 KEGG: app:CAP2UW1_0225 hypothetical protein YP_003525161.1 KEGG: azo:azo1111 hemerythrin-like protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003525162.1 KEGG: noc:Noc_2081 H+-transporting two-sector ATPase, D subunit; TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit YP_003525163.1 KEGG: noc:Noc_2082 V-type ATP synthase subunit B; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_003525164.1 KEGG: noc:Noc_2083 V-type ATP synthase subunit A; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_003525165.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: noc:Noc_2084 H+-transporting two-sector ATPase, E subunit YP_003525166.1 KEGG: noc:Noc_2085 hypothetical protein YP_003525167.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: noc:Noc_2086 H+-transporting two-sector ATPase, C subunit YP_003525168.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: noc:Noc_2087 V-type ATPase, 116 kDa subunit YP_003525169.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: noc:Noc_2088 H+-transporting two-sector ATPase, C (AC39) subunit YP_003525170.1 KEGG: noc:Noc_2089 H+-ATPase, subunit H YP_003525171.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: pol:Bpro_0921 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_003525172.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: reh:H16_A2200 formate hydrogenlyase subunit 5 YP_003525173.1 PFAM: NADH/ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4190 hydrogenase 4 subunit F YP_003525174.1 KEGG: pol:Bpro_0918 hydrogenase 4 membrane component YP_003525175.1 KEGG: bph:Bphy_6066 formate hydrogenlyase subunit 4 YP_003525176.1 PFAM: NADH/ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4193 hydrogenase 4 subunit B YP_003525177.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CBS domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: azo:azo1544 GGDEF/EAL/PAC/PAS-domain-containing protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; CBS domain containing protein YP_003525178.1 KEGG: nmu:Nmul_A1182 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding YP_003525179.1 TIGRFAM: DNA polymerase III, subunit alpha; PFAM: DNA polymerase III subunit alpha; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein; KEGG: mei:Msip34_1749 DNA polymerase III, subunit alpha; SMART: phosphoesterase PHP domain protein YP_003525180.1 PFAM: Dihaem Cytochrome C; KEGG: dar:Daro_2813 hypothetical protein YP_003525181.1 KEGG: mfa:Mfla_1131 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003525182.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cyc:PCC7424_4642 short-chain dehydrogenase/reductase SDR YP_003525183.1 KEGG: mxa:MXAN_6405 hypothetical protein YP_003525184.1 KEGG: gur:Gura_1403 hypothetical protein YP_003525185.1 KEGG: mxa:MXAN_6404 hypothetical protein YP_003525186.1 PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_6403 ABC transporter, permease protein YP_003525187.1 KEGG: mxa:MXAN_6402 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003525188.1 TIGRFAM: seryl-tRNA synthetase; KEGG: mei:Msip34_1194 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_003525189.1 KEGG: scl:sce2303 hypothetical protein YP_003525190.1 KEGG: app:CAP2UW1_3128 ATPase AAA; PFAM: ATPase AAA; SMART: AAA ATPase YP_003525191.1 KEGG: nmu:Nmul_A0178 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA YP_003525192.1 KEGG: nmu:Nmul_A0176 cell division FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; AAA ATPase YP_003525193.1 KEGG: mag:amb3889 response regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver YP_003525194.1 KEGG: bvi:Bcep1808_3360 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003525195.1 PFAM: electron transport protein SCO1/SenC; KEGG: mei:Msip34_1206 electron transport protein SCO1/SenC YP_003525196.1 KEGG: mei:Msip34_2525 hypothetical protein YP_003525197.1 TIGRFAM: dethiobiotin synthase; KEGG: nmu:Nmul_A1133 dithiobiotin synthetase; PFAM: Cobyrinic acid ac-diamide synthase YP_003525198.1 KEGG: neu:NE2297 SAM-binding motif-containing protein; TIGRFAM: biotin biosynthesis protein BioC; PFAM: methyltransferase type 11 YP_003525199.1 KEGG: neu:NE2298 biotin biosynthesis protein BioH; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold YP_003525200.1 TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: nmu:Nmul_A1130 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_003525201.1 SMART: biotin and thiamin synthesis associated; Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: tbd:Tbd_0319 biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein YP_003525202.1 PFAM: phosphoribosyltransferase; KEGG: nmu:Nmul_A1128 phosphoribosyltransferase YP_003525203.1 PFAM: hypothetical protein; KEGG: har:HEAR1937 MSHA biogenesis protein MshN YP_003525204.1 KEGG: mmb:Mmol_1208 general secretion pathway protein, ATPase YP_003525205.1 PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: har:HEAR1939 mannose-sensitive hemagglutinin L YP_003525206.1 KEGG: har:HEAR1940 mannose-sensitive agglutinin (MSHA) biogenesis protein MshK (pilus type IV), lipoprotein YP_003525207.1 KEGG: har:HEAR1941 mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV); signal peptide YP_003525208.1 KEGG: har:HEAR1942 mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV); signal peptide YP_003525209.1 KEGG: har:HEAR1943 mannose-sensitive agglutinin (MSHA) biogenesis protein MshI YP_003525211.1 PFAM: G8 domain; KEGG: rfr:Rfer_3337 hypothetical protein YP_003525212.1 KEGG: har:HEAR1946 mannose-sensitive agglutinin (MSHA) biogenesis protein MshP; signal peptide YP_003525213.1 KEGG: rfr:Rfer_3339 methylation YP_003525214.1 KEGG: rfr:Rfer_3340 hypothetical protein YP_003525215.1 KEGG: tbd:Tbd_0755 general secretion pathway protein H YP_003525216.1 KEGG: rfr:Rfer_3363 methylation YP_003525217.1 KEGG: rfr:Rfer_3364 hypothetical protein YP_003525218.1 KEGG: har:HEAR1951 hypothetical protein YP_003525219.1 PFAM: type II secretion system F domain; KEGG: har:HEAR1952 type IV pilus assembly protein TapC YP_003525220.1 KEGG: har:HEAR1953 general secretion pathway protein E (type II traffic warden ATPase); PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: AAA ATPase YP_003525221.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ppg:PputGB1_5103 RNA methyltransferase YP_003525222.1 KEGG: tbd:Tbd_2404 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003525223.1 PFAM: protein of unknown function DUF1058; KEGG: eba:ebA1059 of unknown function YP_003525224.1 KEGG: eba:ebA1056 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB YP_003525225.1 KEGG: eba:ebA1054 glutaredoxin protein; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin YP_003525226.1 KEGG: tbd:Tbd_2399 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003525227.1 PFAM: O-antigen polymerase; KEGG: bte:BTH_I0650 O-antigen polymerase family protein YP_003525228.1 KEGG: dar:Daro_3342 hypothetical protein YP_003525229.1 PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_2397 acriflavin resistance protein YP_003525230.1 KEGG: tbd:Tbd_2396 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003525231.1 KEGG: tbd:Tbd_2395 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003525232.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: tbd:Tbd_2394 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_003525233.1 PFAM: peptidase M23; KEGG: nmu:Nmul_A1120 peptidase M23B YP_003525234.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: mei:Msip34_0439 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein YP_003525235.1 KEGG: tbd:Tbd_2391 hypothetical protein YP_003525236.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_04724 response regulator; SMART: GGDEF domain containing protein YP_003525237.1 KEGG: har:HEAR2872 hypothetical protein YP_003525238.1 PFAM: beta-lactamase; KEGG: dar:Daro_1946 beta-lactamase YP_003525239.1 KEGG: tbd:Tbd_2751 transmembrane protein; manually curated; PFAM: polysaccharide deacetylase YP_003525240.1 PFAM: methyltransferase type 12; KEGG: dar:Daro_4180 hypothetical protein YP_003525241.1 PFAM: histone H1 family protein nucleoprotein HC2; KEGG: har:HEAR2768 histone H1-like protein HC2 (HC2 nucleoprotein) YP_003525242.1 KEGG: tbd:Tbd_1975 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase YP_003525243.1 TIGRFAM: ribonucleoside-diphosphate reductase, subunit alpha; KEGG: rpf:Rpic12D_2637 ribonucleoside-diphosphate reductase, subunit alpha; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; ribonucleotide reductase large subunit domain protein YP_003525244.1 KEGG: neu:NE2182 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003525245.1 KEGG: app:CAP2UW1_0768 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase YP_003525246.1 KEGG: app:CAP2UW1_0767 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003525247.1 KEGG: nmu:Nmul_A1813 hypothetical protein YP_003525248.1 KEGG: GE12790 gene product from transcript GE12790-RA YP_003525249.1 KEGG: abc:ACICU_00617 hypothetical protein YP_003525250.1 manually curated; KEGG: raf:RAF_ORF0353 NADH dehydrogenase I chain N YP_003525252.1 KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I YP_003525253.1 manually curated; KEGG: aca:ACP_3495 heavy metal efflux RND transporter, MFP subunit CusB YP_003525254.1 KEGG: sgl:SG0955 lysine transporter YP_003525255.1 KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein YP_003525256.1 KEGG: bbt:BBta_1296 spermine/spermidine synthase family protein YP_003525257.1 manually curated; KEGG: pjd:Pjdr2_2679 ABC transporter related YP_003525258.1 manually curated; KEGG: cms:CMS_0462 potassium-transporting ATPase subunit A YP_003525259.1 KEGG: tcu:Tcur_0052 protein of unknown function DUF323; PFAM: protein of unknown function DUF323 YP_003525260.1 KEGG: tgr:Tgr7_0929 major facilitator transporter YP_003525261.1 KEGG: cpi:Cpin_2124 hypothetical protein YP_003525262.1 KEGG: ter:Tery_0554 membrane bound O-acyl transferase, MBOAT YP_003525263.1 KEGG: oih:OB0951 hypothetical protein YP_003525265.1 KEGG: afl:Aflv_1167 Kef-type K+ transport system (membrane and NAD-binding components) YP_003525266.1 PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, Cytochrome C subunit YP_003525267.1 KEGG: sth:STH3153 Cytochrome C oxidase heme b and copper-binding subunit; PFAM: Cytochrome C oxidase subunit I YP_003525268.1 KEGG: COPI-coated vesicle associated protein (predicted) YP_003525269.1 PFAM: Cytochrome C class I; KEGG: tbd:Tbd_0129 Cytochrome C-type protein YP_003525270.1 KEGG: bba:Bd2601 nitric oxide reductase, Cytochrome C-containing subunit YP_003525271.1 PFAM: Cytochrome C oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1 YP_003525272.1 KEGG: chl:Chy400_0633 hypothetical protein YP_003525273.1 KEGG: AGAP003276-PA ; K13169 splicing factor, arginine/serine-rich 17 YP_003525274.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sdl:Sdel_1336 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain YP_003525275.1 KEGG: gme:Gmet_1038 molybdopterin molybdochelatase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV YP_003525276.1 KEGG: gbm:Gbem_2264 formate dehydrogenase family accessory protein FdhD YP_003525277.1 KEGG: dol:Dole_0206 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region YP_003525278.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: tga:TGAM_0172 MoaE molybdopterin synthase, large chain (MoaE) YP_003525279.1 PFAM: thiamineS protein; KEGG: mmr:Mmar10_2712 thiamineS protein YP_003525280.1 KEGG: dhd:Dhaf_1401 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region YP_003525281.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: har:HEAR2978 thiazole biosynthesis protein YP_003525282.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; radical SAM domain protein; KEGG: pol:Bpro_2288 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_003525283.1 KEGG: tbd:Tbd_1704 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003525284.1 PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; KEGG: mei:Msip34_1097 protein of unknown function DUF59 YP_003525285.1 PFAM: NLP/P60 protein; KEGG: dar:Daro_1201 NLP/P60 YP_003525286.1 TIGRFAM: lytic murein transglycosylase B; KEGG: neu:NE1033 membrane-bound lytic transglycosylase YP_003525287.1 KEGG: tbd:Tbd_1001 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003525288.1 KEGG: neu:NE1928 Smr domain-containing protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2 YP_003525289.1 KEGG: mfa:Mfla_1689 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; peroxiredoxin-like YP_003525290.1 KEGG: azo:azo1111 hemerythrin-like protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003525291.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: tbd:Tbd_2507 lipid A export ATP-binding/permease protein MsbA; SMART: AAA ATPase YP_003525292.1 KEGG: mmb:Mmol_0279 hypothetical protein YP_003525293.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: nmu:Nmul_A0628 TonB-dependent receptor YP_003525294.1 KEGG: nmu:Nmul_A0627 hypothetical protein YP_003525295.1 PFAM: protein of unknown function DUF710; KEGG: mei:Msip34_0158 protein of unknown function DUF710 YP_003525296.1 PFAM: protein of unknown function DUF55; KEGG: nmu:Nmul_A0614 hypothetical protein YP_003525297.1 PFAM: protein of unknown function DUF81; KEGG: app:CAP2UW1_1142 protein of unknown function DUF81 YP_003525298.1 KEGG: sus:Acid_3512 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003525299.1 KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003525300.1 KEGG: ses:SARI_02143 hypothetical protein YP_003525301.1 KEGG: mms:mma_2546 ABC-type branched-chain amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003525302.1 PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator YP_003525303.1 PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3611 inner-membrane translocator YP_003525304.1 PFAM: Extracellular ligand-binding receptor; KEGG: app:CAP2UW1_3612 extracellular ligand-binding receptor YP_003525305.1 PFAM: Cytochrome C class I; KEGG: mmb:Mmol_0398 Cytochrome C class I YP_003525306.1 PFAM: Cytochrome C class I; KEGG: mei:Msip34_0374 Cytochrome C class I YP_003525307.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tbd:Tbd_2729 partition-related protein YP_003525308.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: mfa:Mfla_0340 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003525309.1 KEGG: neu:NE0105 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_003525310.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: nmu:Nmul_A2132 hypothetical protein YP_003525311.1 PFAM: type II secretion system F domain; KEGG: mei:Msip34_0586 type II secretion system protein YP_003525312.1 KEGG: tmz:Tmz1t_1173 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_003525313.1 KEGG: app:CAP2UW1_0755 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_003525314.1 PFAM: protein of unknown function DUF1342; KEGG: app:CAP2UW1_0756 protein of unknown function DUF1342 YP_003525315.1 PFAM: protein of unknown function DUF329; KEGG: nmu:Nmul_A1006 hypothetical protein YP_003525316.1 KEGG: mfa:Mfla_2230 hypothetical protein; manually curated; PFAM: thiamine monophosphate synthase; NUDIX hydrolase YP_003525317.1 KEGG: tmz:Tmz1t_3660 protein of unknown function DUF815; PFAM: protein of unknown function DUF815; SMART: AAA ATPase YP_003525318.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: mfa:Mfla_2232 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ YP_003525319.1 KEGG: hna:Hneap_1461 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003525320.1 KEGG: nmu:Nmul_A2485 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_003525321.1 PFAM: peptidase M23; KEGG: nmu:Nmul_A2486 peptidase M23B YP_003525322.1 KEGG: mei:Msip34_0496 protein of unknown function DUF721; manually curated; PFAM: protein of unknown function DUF721 YP_003525323.1 KEGG: tmz:Tmz1t_3420 hypothetical protein YP_003525324.1 KEGG: mmb:Mmol_1997 UDP-3-0-acyl N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003525325.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: tbd:Tbd_0125 cell division protein FtsZ; SMART: Tubulin/FtsZ, 2-layer sandwich domain YP_003525326.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: tbd:Tbd_0124 cell division protein FtsA; SMART: cell division protein FtsA YP_003525327.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: mmb:Mmol_2000 cell division protein FtsQ YP_003525328.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: mfa:Mfla_2266 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003525329.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: mfa:Mfla_2267 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003525330.1 KEGG: tmz:Tmz1t_3426 UDP-N-acetylmuramate/alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003525331.1 TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: eba:ebA1444 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003525332.1 KEGG: mfa:Mfla_2270 cell cycle protein; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein YP_003525333.1 KEGG: nmu:Nmul_A2496 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; FAD dependent oxidoreductase; cytoplasmic peptidoglycan synthetase domain protein YP_003525334.1 TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; KEGG: mei:Msip34_0457 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_003525335.1 KEGG: tbd:Tbd_0115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003525336.1 KEGG: mfa:Mfla_2274 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003525337.1 KEGG: mei:Msip34_0454 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003525338.1 KEGG: mfa:Mfla_2276 cell division protein, FtsL -like protein; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL YP_003525339.1 KEGG: lhk:LHK_03064 MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_003525340.1 KEGG: net:Neut_0255 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_003525341.1 PFAM: OmpA/MotB domain protein; KEGG: ank:AnaeK_0927 OmpA/MotB domain protein YP_003525342.1 KEGG: similar to Bloom syndrome protein homolog (Dmblm) (Mutagen-sensitive protein 309) (RecQ helicase homolog); K10901 bloom syndrome protein YP_003525343.1 KEGG: nmu:Nmul_A0434 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_003525344.1 KEGG: nmu:Nmul_A0435 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein YP_003525345.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: neu:NE1743 ribose-5-phosphate isomerase A; PFAM: ribose 5-phosphate isomerase YP_003525346.1 manually curated; TIGRFAM: tyrosine recombinase XerD; KEGG: nmu:Nmul_A0748 tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_003525347.1 KEGG: nmu:Nmul_A0747 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_003525348.1 KEGG: mmb:Mmol_2071 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_003525349.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: mei:Msip34_2392 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003525350.1 KEGG: lhk:LHK_00361 RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_003525351.1 KEGG: neu:NE1671 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_003525352.1 PFAM: Cytochrome C assembly protein; KEGG: nmu:Nmul_A2133 Cytochrome C assembly protein YP_003525353.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: nmu:Nmul_A2134 signal recognition particle protein; SMART: AAA ATPase YP_003525354.1 KEGG: cyb:CYB_0748 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003525355.1 KEGG: mfa:Mfla_0128 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein subunit beta; Threonine dehydratase domain protein YP_003525356.1 PFAM: TfoX domain protein; KEGG: ccs:CCNA_00406 DNA transformation protein TfoX YP_003525357.1 KEGG: rxy:Rxyl_1321 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_003525358.1 KEGG: neu:NE0361 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: transketolase domain protein YP_003525359.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; KEGG: bpm:BURPS1710b_2744 dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_003525360.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: tbd:Tbd_2441 nicotinate-nucleotide adenylyltransferase; PFAM: cytidylyltransferase; Nicotinamide mononucleotide adenylyltransferase-like YP_003525361.1 KEGG: tmz:Tmz1t_3821 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_003525362.1 PFAM: protein of unknown function DUF163; KEGG: bur:Bcep18194_A5626 rRNA large subunit methyltransferase YP_003525363.1 KEGG: neu:NE0356 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003525364.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: tbd:Tbd_2437 RNAse G; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein YP_003525365.1 KEGG: xcv:XCV1084 histone-like protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003525366.1 KEGG: pnu:Pnuc_2052 cyclase/dehydrase YP_003525367.1 PFAM: protein of unknown function DUF167; KEGG: nmu:Nmul_A0579 hypothetical protein YP_003525368.1 PFAM: protein of unknown function YGGT; KEGG: nmu:Nmul_A0580 hypothetical protein YP_003525369.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: mei:Msip34_0621 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003525370.1 PFAM: alanine racemase domain protein; KEGG: mms:mma_0341 hypothetical protein YP_003525371.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_3883 pilus retraction protein PilT; SMART: AAA ATPase YP_003525372.1 KEGG: mfa:Mfla_2106 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_003525373.1 KEGG: bcv:Bcav_1395 LmbE family protein YP_003525374.1 PFAM: DoxX family protein; KEGG: mpt:Mpe_A2957 hypothetical protein YP_003525375.1 PFAM: protein of unknown function DUF2063; KEGG: cvi:CV_3514 hypothetical protein YP_003525376.1 PFAM: protein of unknown function DUF692; KEGG: cvi:CV_3513 hypothetical protein YP_003525377.1 PFAM: protein of unknown function DUF2282, transmembrane; KEGG: cps:CPS_0845 hypothetical protein YP_003525378.1 KEGG: Os06g0112400; hypothetical protein YP_003525379.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: sus:Acid_6211 methionine sulfoxide reductase A; PFAM: Methionine sulfoxide reductase A YP_003525380.1 PFAM: Cytochrome C biogenesis protein transmembrane region; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: oca:OCAR_6268 Cytochrome C biogenesis protein, transmembrane region YP_003525381.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: tel:tlr1214 methionine sulfoxide reductase B; PFAM: Methionine sulfoxide reductase B YP_003525382.1 KEGG: mag:amb4390 hypothetical protein YP_003525383.1 KEGG: eli:ELI_10350 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003525384.1 PFAM: protein of unknown function DUF1109; KEGG: rpt:Rpal_1069 protein of unknown function DUF1109 YP_003525385.1 KEGG: tbd:Tbd_2617 hypothetical protein YP_003525386.1 KEGG: swp:swp_3341 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_003525387.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mxa:MXAN_0865 short chain dehydrogenase/reductase family oxidoreductase YP_003525388.1 PFAM: acylphosphatase; KEGG: tbd:Tbd_0859 acylphosphatase YP_003525389.1 PFAM: protein of unknown function DUF107; KEGG: nmu:Nmul_A1039 hypothetical protein YP_003525390.1 KEGG: pol:Bpro_3547 SPFH domain-containing protein/band 7 family protein; PFAM: band 7 protein; SMART: band 7 protein YP_003525391.1 KEGG: sat:SYN_01026 rhomboid family protein YP_003525392.1 KEGG: mmb:Mmol_0398 Cytochrome C class I YP_003525393.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV, B subunit; KEGG: bpt:Bpet1972 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein YP_003525394.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: reu:Reut_A2356 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003525395.1 KEGG: pfo:Pfl01_4624 hypothetical protein YP_003525396.1 KEGG: cyn:Cyan7425_1575 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003525397.1 KEGG: cyn:Cyan7425_1574 hypothetical protein YP_003525398.1 SMART: beta-lactamase domain protein; KEGG: cyn:Cyan7425_1573 beta-lactamase domain protein YP_003525399.1 PFAM: transposase IS3/IS911 family protein; KEGG: xcv:XCV0619 transposase YP_003525400.1 PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit YP_003525401.1 KEGG: bcj:BCAM0627 hypothetical protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891 YP_003525402.1 TIGRFAM: addiction module antidote protein; KEGG: bcj:BCAM0626 DNA-binding protein YP_003525403.1 KEGG: sus:Acid_6423 hypothetical protein YP_003525404.1 PFAM: methyltransferase type 11; KEGG: rlg:Rleg_0167 methyltransferase type 11 YP_003525405.1 PFAM: protein of unknown function DUF2136; KEGG: rrs:RoseRS_0380 hypothetical protein YP_003525406.1 SMART: helix-turn-helix domain protein; KEGG: rlt:Rleg2_0775 transcription regulator with HTH domain YP_003525407.1 KEGG: gur:Gura_3207 hypothetical protein YP_003525408.1 KEGG: bvi:Bcep1808_2979 YecA family protein; TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein YP_003525409.1 PFAM: dUTPase; KEGG: amc:MADE_01024 leucyl/phenylalanyl-tRNA--protein transferase YP_003525410.1 KEGG: chl:Chy400_0438 conserved repeat domain protein YP_003525411.1 PFAM: methyltransferase type 11; KEGG: sru:SRU_1292 hypothetical protein YP_003525412.1 KEGG: hypothetical protein; K04739 cAMP-dependent protein kinase regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003525413.1 KEGG: mca:MCA1012 hypothetical protein YP_003525414.1 PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2930 isochorismatase hydrolase YP_003525415.1 PFAM: PEBP family protein; KEGG: nmu:Nmul_A1171 YbhB and YbcL YP_003525416.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: dps:DP2309 hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003525417.1 KEGG: Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway YP_003525418.1 KEGG: msu:MS1456 hypothetical protein YP_003525419.1 SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: pin:Ping_3129 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PFAM: EAL domain protein; PAS fold-4 domain protein; GGDEF domain containing protein YP_003525420.1 KEGG: mmb:Mmol_1922 ankyrin YP_003525421.1 KEGG: mmb:Mmol_0033 hypothetical protein YP_003525422.1 KEGG: dar:Daro_0014 hypothetical protein YP_003525423.1 SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: mmb:Mmol_0423 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; PAS fold-3 domain protein YP_003525424.1 KEGG: mmw:Mmwyl1_0650 sulfate ABC transporter, inner membrane subunit CysW YP_003525425.1 KEGG: mmb:Mmol_1922 ankyrin YP_003525426.1 PFAM: RNA methylase; THUMP domain protein; KEGG: nmu:Nmul_A1032 RNA methylase YP_003525427.1 PFAM: conserved hypothetical protein; KEGG: tmz:Tmz1t_3722 hypothetical protein YP_003525428.1 KEGG: tbd:Tbd_0276 ABC transporter, NodJ; TIGRFAM: ABC transporter, NodJ family; PFAM: ABC transporter YP_003525429.1 KEGG: mmw:Mmwyl1_2447 hypothetical protein YP_003525430.1 KEGG: mms:mma_3383 ABC-2 type transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003525431.1 KEGG: net:Neut_1627 esterase/lipase/thioesterase family protein YP_003525432.1 KEGG: nmu:Nmul_A0978 ferredoxin 2fe-2s protein YP_003525433.1 PFAM: VanZ family protein; KEGG: dar:Daro_4156 VanZ like protein YP_003525434.1 KEGG: aeh:Mlg_0407 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_003525435.1 PFAM: protein of unknown function DUF167; KEGG: gur:Gura_2104 hypothetical protein YP_003525436.1 KEGG: rfr:Rfer_3457 RNA-binding S4; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003525437.1 PFAM: protein of unknown function DUF2132; KEGG: glo:Glov_3518 hypothetical protein YP_003525438.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; PAS fold-3 domain protein; KEGG: nmu:Nmul_A1287 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003525439.1 KEGG: nmu:Nmul_A1288 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003525440.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A1289 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein YP_003525441.1 KEGG: hypothetical protein YP_003525442.1 PFAM: globin; KEGG: pub:SAR11_1217 globin family protein YP_003525443.1 KEGG: tbd:Tbd_2327 sulfite reductase; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003525444.1 KEGG: shl:Shal_2177 hypothetical protein YP_003525445.1 SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; TIGRFAM: DNA polymerase I; KEGG: mei:Msip34_0388 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; 5'-3' exonuclease, SAM-fold domain; 5'-3' exonuclease, N-terminal resolvase-like domain YP_003525446.1 PFAM: conserved hypothetical protein; KEGG: nmu:Nmul_A0567 hypothetical protein YP_003525447.1 KEGG: tbd:Tbd_2451 hypothetical protein YP_003525448.1 TIGRFAM: homoserine kinase; KEGG: neu:NE1471 homoserine kinase; PFAM: aminoglycoside phosphotransferase YP_003525449.1 KEGG: mmb:Mmol_0413 transmembrane protein YP_003525450.1 KEGG: tcx:Tcr_0164 hypothetical protein YP_003525451.1 KEGG: net:Neut_1369 hypothetical protein YP_003525452.1 KEGG: azc:AZC_3500 cytochrome b/c1 YP_003525453.1 KEGG: rfr:Rfer_3913 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003525454.1 KEGG: app:CAP2UW1_0786 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase YP_003525455.1 PFAM: MEKHLA domain protein; KEGG: pjd:Pjdr2_5383 MEKHLA domain protein YP_003525456.1 PFAM: UvrD/REP helicase; KEGG: nmu:Nmul_A0563 UvrD/REP helicase YP_003525457.1 KEGG: tgr:Tgr7_0591 MazG nucleotide pyrophosphohydrolase YP_003525458.1 KEGG: tbd:Tbd_2447 phosphoribulokinase; PFAM: phosphoribulokinase/uridine kinase YP_003525459.1 KEGG: bpt:Bpet3324 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_003525460.1 PFAM: lipoprotein B; KEGG: har:HEAR2662 lipoprotein B transmembrane YP_003525461.1 TIGRFAM: DNA polymerase III, subunit delta; KEGG: har:HEAR2663 DNA polymerase III subunit delta; PFAM: DNA polymerase III delta YP_003525462.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: mfa:Mfla_0029 CutA1 divalent ion tolerance protein YP_003525463.1 PFAM: Cytochrome C biogenesis protein transmembrane region; KEGG: pol:Bpro_3506 protein-disulfide reductase YP_003525464.1 PFAM: protein of unknown function DUF202; KEGG: hna:Hneap_0884 protein of unknown function DUF202 YP_003525465.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: neu:NE0651 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_003525466.1 KEGG: mfa:Mfla_0025 biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_003525467.1 KEGG: mms:mma_2971 biotin carboxyl carrier protein of acetyl-CoA carboxylase YP_003525468.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: tbd:Tbd_0181 acetyl-CoA carboxylase biotin carboxylase subunit; SMART: biotin carboxylase domain protein YP_003525469.1 KEGG: tbd:Tbd_0180 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_003525470.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: mfa:Mfla_0022 zinc finger/thioredoxin YP_003525471.1 KEGG: tbd:Tbd_0178 glycine cleavage system aminomethyltransferase T; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel YP_003525472.1 KEGG: tbd:Tbd_0177 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_003525473.1 TIGRFAM: glycine dehydrogenase; KEGG: dfe:Dfer_4078 glycine dehydrogenase; PFAM: glycine cleavage system P-protein-like YP_003525474.1 PFAM: Redoxin domain protein; KEGG: bpy:Bphyt_3430 redoxin domain protein YP_003525475.1 KEGG: sus:Acid_7413 hypothetical protein YP_003525476.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tgr:Tgr7_0290 ATPase, P-type (transporting), HAD superfamily, subfamily IC; SMART: cation transporting ATPase domain protein YP_003525477.1 PFAM: sodium/hydrogen exchanger; KEGG: rci:RRC456 Na(+)/H(+) antiporter YP_003525478.1 PFAM: PfkB domain protein; KEGG: neu:NE0611 PfkB family of carbohydrate kinase YP_003525479.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pca:Pcar_3047 lactoylglutathione lyase YP_003525480.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: tbd:Tbd_0148 hypothetical protein YP_003525481.1 KEGG: dar:Daro_1388 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003525482.1 KEGG: eba:ebA1871 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_003525483.1 KEGG: nmu:Nmul_A0206 diadenosine tetraphosphatase; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase YP_003525484.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: tmz:Tmz1t_3262 membrane bound O-acyl transferase MBOAT family protein YP_003525485.1 KEGG: vap:Vapar_4225 hypothetical protein YP_003525486.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein YP_003525487.1 PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein YP_003525488.1 PFAM: glycosyl transferase group 1; KEGG: pwa:Pecwa_4376 glycosyl transferase group 1 YP_003525489.1 PFAM: methyltransferase type 11; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_003525490.1 PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 signal peptide protein YP_003525491.1 PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0756 glycosyl transferase family protein YP_003525492.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: tbd:Tbd_1871 epimerase/dehydratase polysaccharide-related biosynthesis protein YP_003525493.1 PFAM: glycosyl transferase, family 4, conserved region; KEGG: nmu:Nmul_A0632 glycosyl transferase family protein YP_003525494.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mmb:Mmol_1037 NAD-dependent epimerase/dehydratase YP_003525495.1 PFAM: acyltransferase 3; KEGG: dol:Dole_1300 acyltransferase 3 YP_003525496.1 KEGG: pmc:P9515_12781 hypothetical protein YP_003525497.1 PFAM: glycosyl transferase family 2; KEGG: mei:Msip34_0125 glycosyl transferase family 2 YP_003525498.1 PFAM: glycosyl transferase family 2; KEGG: cef:CE0379 hypothetical protein YP_003525499.1 PFAM: glycosyl transferase family 2; KEGG: tel:tll0993 glycosly transferase YP_003525500.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02661 NAD-dependent epimerase/dehydratase family protein YP_003525501.1 PFAM: glycosyl transferase family 11; KEGG: tel:tlr2316 fucosyl transferase YP_003525502.1 KEGG: tel:tlr2315 fucosyl transferase YP_003525503.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_02658 glycosyltransferase YP_003525504.1 PFAM: polysaccharide biosynthesis protein; KEGG: dol:Dole_1966 polysaccharide biosynthesis protein YP_003525505.1 PFAM: cephalosporin hydroxylase; KEGG: syn:slr1619 hypothetical protein YP_003525506.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: rpe:RPE_4257 hexapaptide repeat-containing transferase YP_003525507.1 KEGG: rlg:Rleg_4504 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_003525508.1 PFAM: C-methyltransferase; methyltransferase type 12; methyltransferase domain protein; KEGG: pla:Plav_3350 C-methyltransferase YP_003525509.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: sat:SYN_02650 CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003525510.1 KEGG: gbm:Gbem_0856 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003525511.1 KEGG: avn:Avin_27780 glucose-1-phosphate cytidylyltransferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase YP_003525512.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mmb:Mmol_1027 DegT/DnrJ/EryC1/StrS aminotransferase YP_003525513.1 KEGG: cpb:Cphamn1_1931 NAD-dependent epimerase/dehydratase; manually curated; PFAM: NAD-dependent epimerase/dehydratase YP_003525514.1 KEGG: mmb:Mmol_1025 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003525515.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tgr:Tgr7_2079 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase YP_003525516.1 PFAM: regulatory protein MarR; KEGG: lbl:LBL_1164 transcriptional regulator YP_003525517.1 PFAM: glycosyl transferase family 9; KEGG: cbd:CBUD_2105 ADP-heptose--LPS heptosyltransferase YP_003525518.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; glycosyl transferase group 1; KEGG: eba:ebA1636 3-deoxy-D-manno-octulosonic-acid transferase YP_003525519.1 KEGG: ppw:PputW619_1397 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003525520.1 KEGG: cli:Clim_1904 S23 ribosomal protein; manually curated; PFAM: S23 ribosomal protein YP_003525521.1 KEGG: aeh:Mlg_2319 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase YP_003525522.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: pmy:Pmen_4291 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003525523.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: bpy:Bphyt_0881 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_003525525.1 KEGG: tbd:Tbd_2697 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_003525526.1 KEGG: tbd:Tbd_2695 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003525527.1 KEGG: mms:mma_0384 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_003525528.1 KEGG: cli:Clim_0057 hypothetical protein YP_003525529.1 KEGG: har:HEAR0008 restriction endonuclease YP_003525530.1 manually curated; KEGG: set:SEN2203 hypothetical protein YP_003525531.1 KEGG: kko:Kkor_1550 protein of unknown function DUF1289; manually curated; PFAM: protein of unknown function DUF1289 YP_003525532.1 TIGRFAM: undecaprenol kinase; KEGG: nmu:Nmul_A2286 undecaprenol kinase, PFAM: Bacitracin resistance protein BacA YP_003525533.1 KEGG: app:CAP2UW1_0249 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003525534.1 KEGG: lhk:LHK_01972 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003525535.1 KEGG: app:CAP2UW1_0248 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_003525536.1 KEGG: mfa:Mfla_2448 hypothetical protein YP_003525537.1 KEGG: mei:Msip34_2494 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003525538.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: mei:Msip34_2495 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: response regulator receiver; AAA ATPase YP_003525539.1 PFAM: phosphoesterase; KEGG: mmi:MMAR_1216 acid phosphatase YP_003525540.1 KEGG: mmb:Mmol_2153 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase YP_003525541.1 PFAM: glutaredoxin; KEGG: mms:mma_0670 hypothetical protein YP_003525542.1 KEGG: mei:Msip34_0194 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_003525543.1 KEGG: neu:NE1664 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_003525544.1 KEGG: mei:Msip34_0627 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_003525545.1 KEGG: mmb:Mmol_0637 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_003525547.1 PFAM: protein of unknown function DUF179; KEGG: mei:Msip34_0630 protein of unknown function DUF179 YP_003525548.1 KEGG: app:CAP2UW1_3590 CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_003525549.1 KEGG: dar:Daro_3896 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003525550.1 KEGG: dar:Daro_3897 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003525551.1 KEGG: app:CAP2UW1_3587 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003525552.1 KEGG: tbd:Tbd_2552 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003525553.1 PFAM: cation transporter; KEGG: mca:MCA2041 TrkH family potassium uptake protein YP_003525554.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: net:Neut_1132 potassium transporter peripheral membrane component YP_003525555.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: net:Neut_1050 redoxin domain-containing protein YP_003525556.1 PFAM: protein of unknown function DUF558; KEGG: tmz:Tmz1t_1500 protein of unknown function DUF558 YP_003525557.1 PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1992 OmpA/MotB YP_003525558.1 KEGG: bph:Bphy_3718 hypothetical protein YP_003525559.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: nmu:Nmul_A1270 4-oxalocrotonate tautomerase YP_003525560.1 TIGRFAM: amino-acid N-acetyltransferase; KEGG: nmu:Nmul_A0380 N-acetylglutamate synthase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase YP_003525561.1 KEGG: vei:Veis_1222 hypothetical protein; manually curated; PFAM: Fe(II) trafficking protein YggX YP_003525562.1 KEGG: nmu:Nmul_A0382 polyphosphate kinase; PFAM: polyphosphate kinase YP_003525563.1 KEGG: tbd:Tbd_0366 hypothetical protein YP_003525564.1 KEGG: nmu:Nmul_A0198 phosphohistidine phosphatase, SixA; PFAM: phosphoglycerate mutase; SMART: phosphoglycerate mutase YP_003525565.1 PFAM: protein of unknown function DUF344; KEGG: glo:Glov_3059 protein of unknown function DUF344 YP_003525566.1 KEGG: hypothetical protein YP_003525567.1 PFAM: protein of unknown function DUF2288; KEGG: cja:CJA_2968 hypothetical protein YP_003525568.1 KEGG: aav:Aave_0106 carbonic anhydrase family 3 YP_003525569.1 KEGG: app:CAP2UW1_1005 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system YP_003525570.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: app:CAP2UW1_1004 hypothetical protein YP_003525571.1 manually curated; KEGG: ppw:PputW619_2830 hypothetical protein YP_003525572.1 TIGRFAM: dihydroorotase, homodimeric type; KEGG: cti:RALTA_A0435 dihydroorotase; PFAM: amidohydrolase YP_003525573.1 KEGG: rfr:Rfer_2573 flavodoxin YP_003525574.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nmu:Nmul_A0196 hypothetical protein YP_003525575.1 PFAM: LppC family lipoprotein; KEGG: mfa:Mfla_2282 lipoprotein-like protein YP_003525576.1 PFAM: protein of unknown function UPF0102; KEGG: cti:RALTA_A3032 conserved hypothetical protein, UPF0102 YP_003525577.1 PFAM: sugar isomerase (SIS); KEGG: azo:azo0870 phosphoheptose isomerase YP_003525578.1 PFAM: transport-associated; KEGG: eba:ebA1464 hypothetical protein YP_003525579.1 KEGG: eba:ebB144 cytidylyltransferase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003525580.1 PFAM: protein of unknown function DUF971; KEGG: azo:azo0163 hypothetical protein YP_003525581.1 KEGG: tbd:Tbd_0215 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_003525582.1 KEGG: dar:Daro_0824 hypothetical protein YP_003525583.1 PFAM: plasmid stabilization system; KEGG: ara:Arad_1350 plasmid stabilization system YP_003525584.1 KEGG: gsu:GSU3438 hypothetical protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein YP_003525585.1 KEGG: dar:Daro_3448 hypothetical protein YP_003525586.1 PFAM: pseudouridine synthase; KEGG: app:CAP2UW1_2371 pseudouridine synthase YP_003525587.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: mmb:Mmol_2092 import inner membrane translocase subunit Tim44 YP_003525588.1 KEGG: dar:Daro_3869 ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein YP_003525589.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mms:mma_0064 chromosome partitioning protein ParA YP_003525590.1 KEGG: dar:Daro_3931 glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS) YP_003525591.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: har:HEAR3196 bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal); PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein YP_003525592.1 KEGG: eba:ebA3008 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon-like YP_003525593.1 SMART: AAA ATPase; TIGRFAM: ATP synthase F1, subunit beta; KEGG: mmb:Mmol_2331 ATP synthase F1, subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_003525594.1 KEGG: mei:Msip34_2816 ATP synthase F1, subunit gamma; TIGRFAM: ATP synthase F1, subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma YP_003525595.1 TIGRFAM: ATP synthase F1, subunit alpha; KEGG: mei:Msip34_2817 ATP synthase F1, subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_003525596.1 KEGG: noc:Noc_3077 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_003525597.1 KEGG: mfa:Mfla_2748 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_003525598.1 KEGG: tbd:Tbd_2802 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_003525599.1 KEGG: tbd:Tbd_2803 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_003525600.1 KEGG: tbd:Tbd_2804 hypothetical protein; manually curated; PFAM: ATP synthase I chain YP_003525601.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: app:CAP2UW1_4360 ParB-like partition protein; SMART: ParB domain protein nuclease YP_003525602.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nmu:Nmul_A2768 cobyrinic acid a,c-diamide synthase YP_003525603.1 KEGG: lhk:LHK_03011 GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_003525604.1 KEGG: mei:Msip34_2826 glucose inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_003525605.1 manually curated; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; KEGG: nmu:Nmul_A2775 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_003525606.1 KEGG: nmu:Nmul_A2776 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein YP_003525607.1 KEGG: mgm:Mmc1_3758 hypothetical protein; manually curated; PFAM: protein of unknown function DUF37 YP_003525608.1 manually curated; TIGRFAM: ribonuclease P protein component; KEGG: lhk:LHK_03238 RnpA; PFAM: ribonuclease P protein YP_003525609.1 manually curated; TIGRFAM: ribosomal protein L34; KEGG: dar:Daro_4204 50S ribosomal protein L34; PFAM: ribosomal protein L34