-- dump date 20140620_063714 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 318161000001 SEQ_END SEQ_END NC_007954.1 4545906 4545906 DR NC_007954.1; contig end 4545906..4545906 Shewanella denitrificans OS217 YP_561021.1 CDS dnaA NC_007954.1 10 1398 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 10..1398 Shewanella denitrificans OS217 4017793 YP_561022.1 CDS Sden_0002 NC_007954.1 1418 2518 D DNA polymerase III, beta subunit 1418..2518 Shewanella denitrificans OS217 4017794 YP_561023.1 CDS recF NC_007954.1 2617 3699 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2617..3699 Shewanella denitrificans OS217 4017795 YP_561024.1 CDS Sden_0004 NC_007954.1 3715 6132 D DNA gyrase, B subunit 3715..6132 Shewanella denitrificans OS217 4017796 YP_561025.1 CDS Sden_0005 NC_007954.1 6236 7441 R di-haem cytochrome c peroxidase complement(6236..7441) Shewanella denitrificans OS217 4017797 YP_561026.1 CDS Sden_0006 NC_007954.1 7441 8154 R hypothetical protein complement(7441..8154) Shewanella denitrificans OS217 4017798 YP_561027.1 CDS Sden_0007 NC_007954.1 8431 11172 D Na-Ca exchanger/integrin-beta4 8431..11172 Shewanella denitrificans OS217 4017799 YP_561028.1 CDS glyS NC_007954.1 11263 13347 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(11263..13347) Shewanella denitrificans OS217 4017800 YP_561029.1 CDS glyQ NC_007954.1 13357 14262 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(13357..14262) Shewanella denitrificans OS217 4017801 YP_561030.1 CDS Sden_0010 NC_007954.1 14373 14936 D DNA-3-methyladenine glycosylase I 14373..14936 Shewanella denitrificans OS217 4017802 YP_561031.1 CDS Sden_0011 NC_007954.1 15084 18281 R amidohydrolase complement(15084..18281) Shewanella denitrificans OS217 4017803 YP_561032.1 CDS Sden_0012 NC_007954.1 18524 18973 R MOSC domain-containing protein complement(18524..18973) Shewanella denitrificans OS217 4017804 YP_561033.1 CDS Sden_0013 NC_007954.1 18976 19221 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(18976..19221) Shewanella denitrificans OS217 4017805 YP_561034.1 CDS fadA NC_007954.1 19738 20901 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(19738..20901) Shewanella denitrificans OS217 4017806 YP_561035.2 CDS fadB NC_007954.1 20924 23074 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(20924..23074) Shewanella denitrificans OS217 4017807 YP_561036.1 CDS Sden_0016 NC_007954.1 23301 24623 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 23301..24623 Shewanella denitrificans OS217 4017808 YP_561037.1 CDS Sden_0017 NC_007954.1 24620 25246 D hypothetical protein 24620..25246 Shewanella denitrificans OS217 4017809 YP_561038.1 CDS Sden_0018 NC_007954.1 25312 26769 D K+ transporter Trk 25312..26769 Shewanella denitrificans OS217 4017810 YP_561039.1 CDS Sden_0019 NC_007954.1 26769 27296 D protoporphyrinogen oxidase 26769..27296 Shewanella denitrificans OS217 4017811 YP_561040.1 CDS Sden_0020 NC_007954.1 27301 27606 R regulatory protein, ArsR complement(27301..27606) Shewanella denitrificans OS217 4017812 YP_561041.1 CDS trkA NC_007954.1 27622 29031 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(27622..29031) Shewanella denitrificans OS217 4017887 YP_561042.1 CDS Sden_0022 NC_007954.1 29050 30336 R sun protein complement(29050..30336) Shewanella denitrificans OS217 4017888 YP_561043.1 CDS Sden_0023 NC_007954.1 30333 31292 R methionyl-tRNA formyltransferase complement(30333..31292) Shewanella denitrificans OS217 4017889 YP_561044.1 CDS def NC_007954.1 31299 31811 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(31299..31811) Shewanella denitrificans OS217 4017890 YP_561045.1 CDS Sden_0025 NC_007954.1 31937 33046 D peptidoglycan-binding LysM 31937..33046 Shewanella denitrificans OS217 4017891 YP_561046.1 CDS Sden_0026 NC_007954.1 33058 34146 D DNA processing protein DprA 33058..34146 Shewanella denitrificans OS217 4017892 YP_561047.1 CDS Sden_0027 NC_007954.1 34149 34622 D hypothetical protein 34149..34622 Shewanella denitrificans OS217 4017893 YP_561048.1 CDS Sden_0028 NC_007954.1 34705 35268 D DNA topoisomerase I 34705..35268 Shewanella denitrificans OS217 4017894 YP_561049.1 CDS Sden_0029 NC_007954.1 35377 35943 D SUA5/yciO/yrdC-like protein 35377..35943 Shewanella denitrificans OS217 4017895 YP_561050.1 CDS Sden_0030 NC_007954.1 35954 36871 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 35954..36871 Shewanella denitrificans OS217 4017896 YP_561051.1 CDS Sden_0031 NC_007954.1 36879 37349 R globin complement(36879..37349) Shewanella denitrificans OS217 4017897 YP_561052.1 CDS Sden_0032 NC_007954.1 37525 38919 D amidohydrolase 37525..38919 Shewanella denitrificans OS217 4017898 YP_561053.1 CDS Sden_0033 NC_007954.1 38937 40229 D amidohydrolase 38937..40229 Shewanella denitrificans OS217 4017899 YP_561054.1 CDS aroE NC_007954.1 40277 41098 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 40277..41098 Shewanella denitrificans OS217 4017900 YP_561055.1 CDS Sden_0035 NC_007954.1 41134 41400 D hypothetical protein 41134..41400 Shewanella denitrificans OS217 4017901 YP_561056.1 CDS Sden_0036 NC_007954.1 41465 42019 R carbonic anhydrase complement(41465..42019) Shewanella denitrificans OS217 4017902 YP_561057.1 CDS Sden_0037 NC_007954.1 48640 49581 D integrase catalytic subunit 48640..49581 Shewanella denitrificans OS217 4017236 YP_561058.1 CDS Sden_0038 NC_007954.1 50191 51132 R integrase catalytic subunit complement(50191..51132) Shewanella denitrificans OS217 4017237 YP_561059.1 CDS Sden_0039 NC_007954.1 51134 53167 D hypothetical protein 51134..53167 Shewanella denitrificans OS217 4017238 YP_561060.1 CDS Sden_0040 NC_007954.1 53406 54374 D hypothetical protein 53406..54374 Shewanella denitrificans OS217 4017239 YP_561061.1 CDS Sden_0041 NC_007954.1 54704 54952 D export protein FliQ 54704..54952 Shewanella denitrificans OS217 4017240 YP_561062.1 CDS Sden_0042 NC_007954.1 54915 55700 D type III secretion system inner membrane R protein 54915..55700 Shewanella denitrificans OS217 4017241 YP_561063.1 CDS Sden_0043 NC_007954.1 55703 56761 D type III secretion exporter 55703..56761 Shewanella denitrificans OS217 4017242 YP_561064.1 CDS Sden_0044 NC_007954.1 56758 58800 D type III secretion FHIPEP 56758..58800 Shewanella denitrificans OS217 4017243 YP_561065.1 CDS Sden_0045 NC_007954.1 58803 59450 D flagellar basal body rod protein-like protein 58803..59450 Shewanella denitrificans OS217 4017244 YP_561066.1 CDS Sden_0046 NC_007954.1 59453 60214 D hypothetical protein 59453..60214 Shewanella denitrificans OS217 4017245 YP_561067.1 CDS Sden_0047 NC_007954.1 60215 61072 D flageller protein FlgA 60215..61072 Shewanella denitrificans OS217 4017246 YP_561068.1 CDS Sden_0048 NC_007954.1 61062 61625 D flagellar L-ring protein 61062..61625 Shewanella denitrificans OS217 4017247 YP_561069.1 CDS flgI NC_007954.1 61625 62740 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 61625..62740 Shewanella denitrificans OS217 4017248 YP_561070.1 CDS Sden_0050 NC_007954.1 62751 63086 D hypothetical protein 62751..63086 Shewanella denitrificans OS217 4017249 YP_561071.1 CDS Sden_0051 NC_007954.1 63086 63469 D flagellar basal body rod protein FlgC 63086..63469 Shewanella denitrificans OS217 4017250 YP_561072.1 CDS Sden_0052 NC_007954.1 63472 63762 D flagellar hook-basal body complex protein (FliE) 63472..63762 Shewanella denitrificans OS217 4017251 YP_561073.1 CDS Sden_0053 NC_007954.1 63778 65097 D secretory protein YscJ/FliF 63778..65097 Shewanella denitrificans OS217 4017252 YP_561074.1 CDS Sden_0054 NC_007954.1 65090 65404 D hypothetical protein 65090..65404 Shewanella denitrificans OS217 4017177 YP_561075.1 CDS Sden_0055 NC_007954.1 65404 66117 D hypothetical protein 65404..66117 Shewanella denitrificans OS217 4017178 YP_561076.1 CDS Sden_0056 NC_007954.1 66110 67420 D ATPase FliI/YscN 66110..67420 Shewanella denitrificans OS217 4017179 YP_561077.1 CDS Sden_0057 NC_007954.1 67427 67855 D hypothetical protein 67427..67855 Shewanella denitrificans OS217 4017180 YP_561078.1 CDS Sden_0058 NC_007954.1 67848 68642 D hypothetical protein 67848..68642 Shewanella denitrificans OS217 4017181 YP_561079.1 CDS Sden_0059 NC_007954.1 68643 69050 D flagellar hook capping protein 68643..69050 Shewanella denitrificans OS217 4017182 YP_561080.1 CDS Sden_0060 NC_007954.1 69065 70243 D hypothetical protein 69065..70243 Shewanella denitrificans OS217 4017183 YP_561081.1 CDS Sden_0061 NC_007954.1 70243 70905 D hypothetical protein 70243..70905 Shewanella denitrificans OS217 4017184 YP_561082.1 CDS Sden_0062 NC_007954.1 70914 71225 D surface presentation of antigens (SPOA) protein 70914..71225 Shewanella denitrificans OS217 4017185 YP_561083.1 CDS fliP NC_007954.1 71500 72189 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 71500..72189 Shewanella denitrificans OS217 4017186 YP_561084.1 CDS Sden_0064 NC_007954.1 72203 72757 D hypothetical protein 72203..72757 Shewanella denitrificans OS217 4017187 YP_561085.1 CDS Sden_0065 NC_007954.1 72832 73098 R hypothetical protein complement(72832..73098) Shewanella denitrificans OS217 4017188 YP_561086.1 CDS Sden_0066 NC_007954.1 73136 74272 R transport protein complement(73136..74272) Shewanella denitrificans OS217 4017189 YP_561087.1 CDS Sden_0067 NC_007954.1 74272 75006 R ABC transporter related complement(74272..75006) Shewanella denitrificans OS217 4017190 YP_561088.1 CDS Sden_0068 NC_007954.1 75009 76574 R peptidase S33, prolyl aminopeptidase complement(75009..76574) Shewanella denitrificans OS217 4017191 YP_561089.1 CDS Sden_0069 NC_007954.1 76662 77051 D regulatory protein GntR, HTH 76662..77051 Shewanella denitrificans OS217 4017192 YP_561090.1 CDS Sden_0070 NC_007954.1 77058 77900 D ABC transporter related 77058..77900 Shewanella denitrificans OS217 4017193 YP_561091.1 CDS Sden_0071 NC_007954.1 77897 79213 D hypothetical protein 77897..79213 Shewanella denitrificans OS217 4017194 YP_561092.1 CDS Sden_0072 NC_007954.1 79325 81118 D AMP-dependent synthetase and ligase 79325..81118 Shewanella denitrificans OS217 4017195 YP_561093.1 CDS Sden_0073 NC_007954.1 81233 81640 D thioesterase superfamily protein 81233..81640 Shewanella denitrificans OS217 4017196 YP_561094.1 CDS Sden_0074 NC_007954.1 81743 82168 R thioesterase superfamily protein complement(81743..82168) Shewanella denitrificans OS217 4017122 YP_561095.1 CDS Sden_0075 NC_007954.1 82387 83451 D hypothetical protein 82387..83451 Shewanella denitrificans OS217 4017123 YP_561096.1 CDS Sden_0076 NC_007954.1 83458 86283 R GGDEF domain-containing protein complement(83458..86283) Shewanella denitrificans OS217 4017124 YP_561097.1 CDS Sden_0077 NC_007954.1 86552 87229 R 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(86552..87229) Shewanella denitrificans OS217 4017125 YP_561098.1 CDS Sden_0078 NC_007954.1 87451 87894 D CMP/dCMP deaminase, zinc-binding 87451..87894 Shewanella denitrificans OS217 4017126 YP_561099.1 CDS Sden_0079 NC_007954.1 87961 88437 D hypothetical protein 87961..88437 Shewanella denitrificans OS217 4017127 YP_561100.1 CDS Sden_0080 NC_007954.1 88680 89165 D hypothetical protein 88680..89165 Shewanella denitrificans OS217 4017128 YP_561101.1 CDS Sden_0081 NC_007954.1 89268 90512 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(89268..90512) Shewanella denitrificans OS217 4017129 YP_561102.1 CDS Sden_0082 NC_007954.1 90669 91376 D histidine utilization repressor 90669..91376 Shewanella denitrificans OS217 4017130 YP_561103.1 CDS Sden_0083 NC_007954.1 91505 93199 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 91505..93199 Shewanella denitrificans OS217 4017131 YP_561104.1 CDS Sden_0084 NC_007954.1 93202 94734 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 93202..94734 Shewanella denitrificans OS217 4017132 YP_561105.1 CDS Sden_0085 NC_007954.1 94806 95330 R hypothetical protein complement(94806..95330) Shewanella denitrificans OS217 4017133 YP_561106.1 CDS Sden_0086 NC_007954.1 95589 96869 D MscS mechanosensitive ion channel 95589..96869 Shewanella denitrificans OS217 4017134 YP_561107.1 CDS Sden_0087 NC_007954.1 97393 97764 R glyoxalase/bleomycin resistance protein/dioxygenase complement(97393..97764) Shewanella denitrificans OS217 4017135 YP_561108.1 CDS Sden_0088 NC_007954.1 99618 100172 R phospholipid/glycerol acyltransferase complement(99618..100172) Shewanella denitrificans OS217 4017136 YP_561109.1 CDS Sden_0089 NC_007954.1 100347 100769 D hypothetical protein 100347..100769 Shewanella denitrificans OS217 4017137 YP_561110.1 CDS Sden_0090 NC_007954.1 100744 101520 R hypothetical protein complement(100744..101520) Shewanella denitrificans OS217 4017138 YP_561111.1 CDS Sden_0091 NC_007954.1 101563 103224 R hypothetical protein complement(101563..103224) Shewanella denitrificans OS217 4017139 YP_561112.1 CDS Sden_0092 NC_007954.1 103529 104122 D multiple antibiotic resistance (MarC)-related proteins 103529..104122 Shewanella denitrificans OS217 4017140 YP_561113.1 CDS Sden_0093 NC_007954.1 104304 104666 D hypothetical protein 104304..104666 Shewanella denitrificans OS217 4017157 YP_561114.1 CDS Sden_0094 NC_007954.1 104720 107317 D peptidase M6, immune inhibitor A 104720..107317 Shewanella denitrificans OS217 4017158 YP_561115.1 CDS Sden_0095 NC_007954.1 107359 107928 R chorismate lyase complement(107359..107928) Shewanella denitrificans OS217 4017159 YP_561116.1 CDS Sden_0096 NC_007954.1 108069 108470 D flagellar basal body-associated protein FliL-like protein 108069..108470 Shewanella denitrificans OS217 4017160 YP_561117.1 CDS Sden_0097 NC_007954.1 108476 109558 D SAM-dependent methyltransferase 108476..109558 Shewanella denitrificans OS217 4017161 YP_561118.1 CDS Sden_0098 NC_007954.1 109632 110480 D PfkB 109632..110480 Shewanella denitrificans OS217 4017162 YP_561119.1 CDS Sden_0099 NC_007954.1 110599 112518 R chemotaxis sensory transducer complement(110599..112518) Shewanella denitrificans OS217 4017163 YP_561120.1 CDS Sden_0100 NC_007954.1 112745 114391 R electron-transferring-flavoprotein dehydrogenase complement(112745..114391) Shewanella denitrificans OS217 4017164 YP_561121.1 CDS moaA NC_007954.1 114686 115699 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 114686..115699 Shewanella denitrificans OS217 4017165 YP_561122.1 CDS moaC NC_007954.1 115800 116279 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 115800..116279 Shewanella denitrificans OS217 4017166 YP_561123.1 CDS Sden_0103 NC_007954.1 116301 116552 D molybdopterin converting factor, subunit 1 116301..116552 Shewanella denitrificans OS217 4017167 YP_561124.1 CDS Sden_0104 NC_007954.1 116555 117025 D molybdopterin biosynthesis MoaE 116555..117025 Shewanella denitrificans OS217 4017168 YP_561125.1 CDS Sden_0105 NC_007954.1 117025 117906 D molybdenum ABC transporter, periplasmic molybdate-binding protein 117025..117906 Shewanella denitrificans OS217 4017169 YP_561126.1 CDS Sden_0106 NC_007954.1 117906 118577 D molybdate ABC transporter permease 117906..118577 Shewanella denitrificans OS217 4017170 YP_561127.1 CDS Sden_0107 NC_007954.1 118567 119694 D ABC transporter related 118567..119694 Shewanella denitrificans OS217 4017171 YP_561128.1 CDS Sden_0108 NC_007954.1 119777 120307 D hypothetical protein 119777..120307 Shewanella denitrificans OS217 4017172 YP_561129.1 CDS Sden_0109 NC_007954.1 120323 121000 D response regulator receiver 120323..121000 Shewanella denitrificans OS217 4017173 YP_561130.1 CDS Sden_0110 NC_007954.1 121059 122306 D ATP-binding region, ATPase-like protein 121059..122306 Shewanella denitrificans OS217 4017174 YP_561131.1 CDS Sden_0111 NC_007954.1 122366 123046 D pseudouridine synthase RluA-like protein 122366..123046 Shewanella denitrificans OS217 4017175 YP_561132.1 CDS Sden_0112 NC_007954.1 123178 123360 D hypothetical protein 123178..123360 Shewanella denitrificans OS217 4017176 YP_561133.1 CDS Sden_0113 NC_007954.1 123425 124192 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(123425..124192) Shewanella denitrificans OS217 4017197 YP_561134.1 CDS Sden_0114 NC_007954.1 124244 125491 R MoeA-likedomain-containing protein complement(124244..125491) Shewanella denitrificans OS217 4017198 YP_561135.1 CDS Sden_0115 NC_007954.1 125646 125918 D excinuclease ABC subunit C 125646..125918 Shewanella denitrificans OS217 4017199 YP_561136.1 CDS Sden_0116 NC_007954.1 125905 126948 D hypothetical protein 125905..126948 Shewanella denitrificans OS217 4017200 YP_561137.1 CDS Sden_0117 NC_007954.1 127004 128545 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(127004..128545) Shewanella denitrificans OS217 4017201 YP_561138.1 CDS hslO NC_007954.1 128791 129657 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(128791..129657) Shewanella denitrificans OS217 4017202 YP_561139.1 CDS Sden_0119 NC_007954.1 129718 130116 R RNA-binding S4 complement(129718..130116) Shewanella denitrificans OS217 4017203 YP_561140.1 CDS Sden_0120 NC_007954.1 130359 131270 D type II secretion system protein C 130359..131270 Shewanella denitrificans OS217 4017204 YP_561141.1 CDS Sden_0121 NC_007954.1 131297 133414 D type II and III secretion system protein 131297..133414 Shewanella denitrificans OS217 4017205 YP_561142.1 CDS Sden_0122 NC_007954.1 133422 134966 D type II secretion system protein E 133422..134966 Shewanella denitrificans OS217 4017206 YP_561143.1 CDS Sden_0123 NC_007954.1 134969 136192 D general secretion pathway protein F 134969..136192 Shewanella denitrificans OS217 4017207 YP_561144.1 CDS Sden_0124 NC_007954.1 136274 136708 D general secretion pathway protein G 136274..136708 Shewanella denitrificans OS217 4017208 YP_561145.1 CDS Sden_0125 NC_007954.1 136732 137319 D general secretion pathway protein H 136732..137319 Shewanella denitrificans OS217 4017209 YP_561146.1 CDS Sden_0126 NC_007954.1 137306 137671 D general secretion pathway protein I 137306..137671 Shewanella denitrificans OS217 4017210 YP_561147.1 CDS Sden_0127 NC_007954.1 137655 138410 D general secretion pathway protein J 137655..138410 Shewanella denitrificans OS217 4017211 YP_561148.1 CDS Sden_0128 NC_007954.1 138410 139498 D general secretion pathway protein K 138410..139498 Shewanella denitrificans OS217 4017212 YP_561149.1 CDS Sden_0129 NC_007954.1 139544 140746 D general secretion pathway L 139544..140746 Shewanella denitrificans OS217 4017213 YP_561150.1 CDS Sden_0130 NC_007954.1 140748 141224 D general secretion pathway M protein 140748..141224 Shewanella denitrificans OS217 4017214 YP_561151.1 CDS Sden_0131 NC_007954.1 141236 141997 D type II secretion system protein N 141236..141997 Shewanella denitrificans OS217 4017215 YP_561152.1 CDS Sden_0132 NC_007954.1 142525 146793 D YD repeat-containing protein 142525..146793 Shewanella denitrificans OS217 4020379 YP_561153.1 CDS Sden_0133 NC_007954.1 146783 148345 D hypothetical protein 146783..148345 Shewanella denitrificans OS217 4020380 YP_561154.1 CDS Sden_0134 NC_007954.1 149091 149201 D hypothetical protein 149091..149201 Shewanella denitrificans OS217 4020381 YP_561155.1 CDS Sden_0135 NC_007954.1 149292 150269 D hypothetical protein 149292..150269 Shewanella denitrificans OS217 4020382 YP_561156.1 CDS Sden_0136 NC_007954.1 150507 151472 D hypothetical protein 150507..151472 Shewanella denitrificans OS217 4020383 YP_561157.1 CDS Sden_0137 NC_007954.1 153873 161366 D Integrins alpha chain 153873..161366 Shewanella denitrificans OS217 4020384 YP_561158.1 CDS Sden_0138 NC_007954.1 161368 161853 D hypothetical protein 161368..161853 Shewanella denitrificans OS217 4020385 YP_561159.1 CDS Sden_0139 NC_007954.1 162751 163077 D hypothetical protein 162751..163077 Shewanella denitrificans OS217 4020386 YP_561160.1 CDS Sden_0140 NC_007954.1 163270 163581 D hypothetical protein 163270..163581 Shewanella denitrificans OS217 4020387 YP_561161.1 CDS Sden_0141 NC_007954.1 163641 164006 D hypothetical protein 163641..164006 Shewanella denitrificans OS217 4020388 YP_561162.1 CDS Sden_0142 NC_007954.1 164021 164746 D hypothetical protein 164021..164746 Shewanella denitrificans OS217 4020389 YP_561163.1 CDS Sden_0143 NC_007954.1 164781 164996 D hypothetical protein 164781..164996 Shewanella denitrificans OS217 4020390 YP_561164.1 CDS Sden_0144 NC_007954.1 165174 165551 D hypothetical protein 165174..165551 Shewanella denitrificans OS217 4020391 YP_561165.1 CDS Sden_0145 NC_007954.1 167067 167405 D hypothetical protein 167067..167405 Shewanella denitrificans OS217 4020392 YP_561166.1 CDS Sden_0146 NC_007954.1 167447 167779 D hypothetical protein 167447..167779 Shewanella denitrificans OS217 4020393 YP_561167.1 CDS Sden_0147 NC_007954.1 167832 168176 R hypothetical protein complement(167832..168176) Shewanella denitrificans OS217 4020394 YP_561168.1 CDS Sden_0148 NC_007954.1 168388 168732 D hypothetical protein 168388..168732 Shewanella denitrificans OS217 4020395 YP_561169.1 CDS Sden_0149 NC_007954.1 169214 170710 D Sodium/proline symporter 169214..170710 Shewanella denitrificans OS217 4020396 YP_561170.1 CDS Sden_0150 NC_007954.1 170727 171836 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 170727..171836 Shewanella denitrificans OS217 4020397 YP_561171.1 CDS Sden_0151 NC_007954.1 171849 173111 D gamma-glutamyl phosphate reductase 171849..173111 Shewanella denitrificans OS217 4020398 YP_561172.1 CDS Sden_0152 NC_007954.1 173414 174934 D PKD 173414..174934 Shewanella denitrificans OS217 4017813 YP_561173.1 CDS murB NC_007954.1 175058 176086 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 175058..176086 Shewanella denitrificans OS217 4017814 YP_561174.1 CDS Sden_0154 NC_007954.1 176083 177054 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 176083..177054 Shewanella denitrificans OS217 4017815 YP_561175.1 CDS Sden_0155 NC_007954.1 177071 177616 R hypothetical protein complement(177071..177616) Shewanella denitrificans OS217 4017816 YP_561176.1 CDS Sden_0156 NC_007954.1 177642 178586 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(177642..178586) Shewanella denitrificans OS217 4017817 YP_561177.1 CDS secE NC_007954.1 179455 179826 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 179455..179826 Shewanella denitrificans OS217 4017821 YP_561178.1 CDS Sden_0158 NC_007954.1 179836 180387 D transcription termination/antitermination factor NusG 179836..180387 Shewanella denitrificans OS217 4017822 YP_561179.1 CDS rplK NC_007954.1 180516 180944 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 180516..180944 Shewanella denitrificans OS217 4017823 YP_561180.1 CDS rplA NC_007954.1 180949 181650 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 180949..181650 Shewanella denitrificans OS217 4017824 YP_561181.1 CDS rplJ NC_007954.1 181935 182435 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 181935..182435 Shewanella denitrificans OS217 4017825 YP_561182.1 CDS rplL NC_007954.1 182490 182858 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 182490..182858 Shewanella denitrificans OS217 4017826 YP_561183.1 CDS rpoB NC_007954.1 183091 187122 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 183091..187122 Shewanella denitrificans OS217 4017827 YP_561184.1 CDS Sden_0164 NC_007954.1 187204 191436 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 187204..191436 Shewanella denitrificans OS217 4017828 YP_561185.1 CDS rpsL NC_007954.1 191615 191989 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 191615..191989 Shewanella denitrificans OS217 4017847 YP_561186.1 CDS Sden_0166 NC_007954.1 192070 192540 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 192070..192540 Shewanella denitrificans OS217 4017848 YP_561187.1 CDS Sden_0167 NC_007954.1 192619 194715 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 192619..194715 Shewanella denitrificans OS217 4017849 YP_561188.1 CDS Sden_0168 NC_007954.1 194785 195969 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 194785..195969 Shewanella denitrificans OS217 4017850 YP_561189.1 CDS rpsJ NC_007954.1 196309 196620 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 196309..196620 Shewanella denitrificans OS217 4017851 YP_561190.1 CDS rplC NC_007954.1 196648 197286 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 196648..197286 Shewanella denitrificans OS217 4017852 YP_561191.1 CDS rplD NC_007954.1 197304 197909 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 197304..197909 Shewanella denitrificans OS217 4017853 YP_561192.1 CDS rplW NC_007954.1 197906 198208 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 197906..198208 Shewanella denitrificans OS217 4017854 YP_561193.1 CDS rplB NC_007954.1 198225 199049 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 198225..199049 Shewanella denitrificans OS217 4017855 YP_561194.1 CDS rpsS NC_007954.1 199065 199343 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 199065..199343 Shewanella denitrificans OS217 4017856 YP_561195.1 CDS rplV NC_007954.1 199359 199691 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 199359..199691 Shewanella denitrificans OS217 4017857 YP_561196.1 CDS rpsC NC_007954.1 199704 200393 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 199704..200393 Shewanella denitrificans OS217 4017858 YP_561197.1 CDS rplP NC_007954.1 200405 200815 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 200405..200815 Shewanella denitrificans OS217 4017859 YP_561198.1 CDS Sden_0178 NC_007954.1 200815 201006 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 200815..201006 Shewanella denitrificans OS217 4017860 YP_561199.1 CDS Sden_0179 NC_007954.1 201006 201254 D 30S ribosomal protein S17 201006..201254 Shewanella denitrificans OS217 4017861 YP_561200.1 CDS rplN NC_007954.1 201434 201802 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 201434..201802 Shewanella denitrificans OS217 4017862 YP_561201.1 CDS rplX NC_007954.1 201814 202128 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 201814..202128 Shewanella denitrificans OS217 4017863 YP_561202.1 CDS rplE NC_007954.1 202141 202680 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 202141..202680 Shewanella denitrificans OS217 4017864 YP_561203.1 CDS rpsN NC_007954.1 202691 202996 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 202691..202996 Shewanella denitrificans OS217 4017865 YP_561204.1 CDS rpsH NC_007954.1 203021 203413 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 203021..203413 Shewanella denitrificans OS217 4017866 YP_561205.1 CDS rplF NC_007954.1 203425 203958 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 203425..203958 Shewanella denitrificans OS217 4017905 YP_561206.1 CDS rplR NC_007954.1 203969 204319 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 203969..204319 Shewanella denitrificans OS217 4017906 YP_561207.1 CDS rpsE NC_007954.1 204331 204834 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 204331..204834 Shewanella denitrificans OS217 4017907 YP_561208.1 CDS rpmD NC_007954.1 204841 205023 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 204841..205023 Shewanella denitrificans OS217 4017908 YP_561209.1 CDS rplO NC_007954.1 205028 205462 D late assembly protein; 50S ribosomal protein L15 205028..205462 Shewanella denitrificans OS217 4017909 YP_561210.1 CDS secY NC_007954.1 205470 206810 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 205470..206810 Shewanella denitrificans OS217 4017910 YP_561211.1 CDS Sden_0191 NC_007954.1 206800 206946 D ribosomal protein L36 206800..206946 Shewanella denitrificans OS217 4017911 YP_561212.1 CDS rpsM NC_007954.1 207061 207417 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 207061..207417 Shewanella denitrificans OS217 4017912 YP_561213.1 CDS Sden_0193 NC_007954.1 207435 207827 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 207435..207827 Shewanella denitrificans OS217 4017913 YP_561214.1 CDS rpsD NC_007954.1 207859 208479 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 207859..208479 Shewanella denitrificans OS217 4017914 YP_561215.1 CDS Sden_0195 NC_007954.1 208504 209493 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 208504..209493 Shewanella denitrificans OS217 4017915 YP_561216.1 CDS rplQ NC_007954.1 209537 209932 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 209537..209932 Shewanella denitrificans OS217 4017916 YP_561217.1 CDS Sden_0197 NC_007954.1 210339 217580 D Rhs family protein-like protein 210339..217580 Shewanella denitrificans OS217 4017917 YP_561218.1 CDS Sden_0198 NC_007954.1 218186 218548 R hypothetical protein complement(218186..218548) Shewanella denitrificans OS217 4017918 YP_561219.1 CDS Sden_0199 NC_007954.1 218807 219850 R transposase IS116/IS110/IS902 complement(218807..219850) Shewanella denitrificans OS217 4017919 YP_561220.1 CDS Sden_0200 NC_007954.1 220138 221019 D hypothetical protein 220138..221019 Shewanella denitrificans OS217 4017920 YP_561221.1 CDS Sden_0201 NC_007954.1 221336 223504 D hypothetical protein 221336..223504 Shewanella denitrificans OS217 4017921 YP_561222.1 CDS Sden_0202 NC_007954.1 223511 223936 D hypothetical protein 223511..223936 Shewanella denitrificans OS217 4017922 YP_561223.1 CDS Sden_0203 NC_007954.1 224154 224504 D hypothetical protein 224154..224504 Shewanella denitrificans OS217 4017923 YP_561224.1 CDS Sden_0204 NC_007954.1 224727 225053 D hypothetical protein 224727..225053 Shewanella denitrificans OS217 4017924 YP_561225.1 CDS Sden_0205 NC_007954.1 225295 226050 D glycosyl transferase family protein 225295..226050 Shewanella denitrificans OS217 4017925 YP_561226.1 CDS Sden_0206 NC_007954.1 226115 226870 R glycosyl transferase family protein complement(226115..226870) Shewanella denitrificans OS217 4017926 YP_561227.1 CDS Sden_0207 NC_007954.1 227056 227826 D glycosyl transferase family protein 227056..227826 Shewanella denitrificans OS217 4017927 YP_561228.1 CDS coaD NC_007954.1 227843 228349 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 227843..228349 Shewanella denitrificans OS217 4017928 YP_561229.1 CDS Sden_0209 NC_007954.1 228351 229835 D hypothetical protein 228351..229835 Shewanella denitrificans OS217 4017929 YP_561230.1 CDS Sden_0210 NC_007954.1 229919 230734 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(229919..230734) Shewanella denitrificans OS217 4017930 YP_561231.1 CDS Sden_0211 NC_007954.1 230735 231229 R hypothetical protein complement(230735..231229) Shewanella denitrificans OS217 4017931 YP_561232.1 CDS Sden_0212 NC_007954.1 231355 231900 R molybdopterin-guanine dinucleotide biosynthesis protein B complement(231355..231900) Shewanella denitrificans OS217 4017932 YP_561233.1 CDS Sden_0213 NC_007954.1 231897 232523 R molybdopterin-guanine dinucleotide biosynthesis protein complement(231897..232523) Shewanella denitrificans OS217 4017933 YP_561234.1 CDS Sden_0214 NC_007954.1 232836 233495 R hypothetical protein complement(232836..233495) Shewanella denitrificans OS217 4017934 YP_561235.1 CDS Sden_0215 NC_007954.1 233966 235168 D metal-dependent phosphohydrolase 233966..235168 Shewanella denitrificans OS217 4017935 YP_561236.1 CDS Sden_0216 NC_007954.1 235482 236429 R hypothetical protein complement(235482..236429) Shewanella denitrificans OS217 4017936 YP_561237.1 CDS Sden_0217 NC_007954.1 236607 237116 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(236607..237116) Shewanella denitrificans OS217 4017937 YP_561238.1 CDS Sden_0218 NC_007954.1 237282 238808 D transciptional regulator 237282..238808 Shewanella denitrificans OS217 4017938 YP_561239.1 CDS Sden_0219 NC_007954.1 239052 239615 D heme oxygenase 239052..239615 Shewanella denitrificans OS217 4017939 YP_561240.1 CDS Sden_0220 NC_007954.1 239621 240121 D bacteriophytochrome-like protein 239621..240121 Shewanella denitrificans OS217 4017940 YP_561241.1 CDS Sden_0221 NC_007954.1 240144 242276 D GGDEF domain-containing protein 240144..242276 Shewanella denitrificans OS217 4017941 YP_561242.1 CDS Sden_0222 NC_007954.1 243070 243744 R HAD family hydrolase complement(243070..243744) Shewanella denitrificans OS217 4017942 YP_561243.1 CDS Sden_0223 NC_007954.1 244271 250006 D fibronectin, type III 244271..250006 Shewanella denitrificans OS217 4017943 YP_561244.1 CDS nudE NC_007954.1 250237 250791 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 250237..250791 Shewanella denitrificans OS217 4017944 YP_561245.1 CDS Sden_0225 NC_007954.1 250894 251703 D 3'(2'),5'-bisphosphate nucleotidase 250894..251703 Shewanella denitrificans OS217 4017945 YP_561246.1 CDS Sden_0226 NC_007954.1 251800 253110 D hypothetical protein 251800..253110 Shewanella denitrificans OS217 4017946 YP_561247.1 CDS Sden_0227 NC_007954.1 253148 254251 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(253148..254251) Shewanella denitrificans OS217 4017947 YP_561248.1 CDS Sden_0228 NC_007954.1 254248 255291 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(254248..255291) Shewanella denitrificans OS217 4017948 YP_561249.1 CDS Sden_0229 NC_007954.1 255388 256494 R stearoyl-CoA 9-desaturase complement(255388..256494) Shewanella denitrificans OS217 4017949 YP_561250.1 CDS Sden_0230 NC_007954.1 256639 257256 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 256639..257256 Shewanella denitrificans OS217 4017950 YP_561251.1 CDS Sden_0231 NC_007954.1 257337 258434 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(257337..258434) Shewanella denitrificans OS217 4017951 YP_561252.1 CDS Sden_0232 NC_007954.1 258675 259508 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 258675..259508 Shewanella denitrificans OS217 4017952 YP_561253.1 CDS Sden_0233 NC_007954.1 259690 260139 R RNA-binding protein complement(259690..260139) Shewanella denitrificans OS217 4017953 YP_561254.1 CDS Sden_0234 NC_007954.1 267196 267861 R response regulator receiver complement(267196..267861) Shewanella denitrificans OS217 4017981 YP_561255.1 CDS Sden_0235 NC_007954.1 267896 269383 R ATP-binding region, ATPase-like protein complement(267896..269383) Shewanella denitrificans OS217 4017982 YP_561256.1 CDS Sden_0236 NC_007954.1 269671 270681 D hypothetical protein 269671..270681 Shewanella denitrificans OS217 4017983 YP_561257.1 CDS Sden_0237 NC_007954.1 270684 271238 D hypothetical protein 270684..271238 Shewanella denitrificans OS217 4017984 YP_561258.1 CDS Sden_0238 NC_007954.1 271412 272353 R integrase catalytic subunit complement(271412..272353) Shewanella denitrificans OS217 4017985 YP_561259.1 CDS Sden_0239 NC_007954.1 272495 273274 D thioesterase 272495..273274 Shewanella denitrificans OS217 4017986 YP_561260.1 CDS Sden_0240 NC_007954.1 273401 273901 R transcription elongation factor GreB complement(273401..273901) Shewanella denitrificans OS217 4017987 YP_561261.1 CDS Sden_0242 NC_007954.1 275231 276163 D esterase 275231..276163 Shewanella denitrificans OS217 4017989 YP_561262.1 CDS Sden_0243 NC_007954.1 276435 278834 D RNA binding S1 276435..278834 Shewanella denitrificans OS217 4017990 YP_561263.1 CDS Sden_0244 NC_007954.1 278944 279738 D SMC protein-like protein 278944..279738 Shewanella denitrificans OS217 4017991 YP_561264.1 CDS Sden_0245 NC_007954.1 279756 281009 R GGDEF domain-containing protein complement(279756..281009) Shewanella denitrificans OS217 4017992 YP_561265.1 CDS Sden_0246 NC_007954.1 281303 282577 D competence-damaged protein 281303..282577 Shewanella denitrificans OS217 4017993 YP_561266.1 CDS Sden_0247 NC_007954.1 282677 283216 R hypothetical protein complement(282677..283216) Shewanella denitrificans OS217 4017994 YP_561267.1 CDS Sden_0248 NC_007954.1 283213 285876 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(283213..285876) Shewanella denitrificans OS217 4017995 YP_561268.1 CDS Sden_0249 NC_007954.1 286030 286323 R hypothetical protein complement(286030..286323) Shewanella denitrificans OS217 4020360 YP_561269.1 CDS argC NC_007954.1 286666 287646 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 286666..287646 Shewanella denitrificans OS217 4020361 YP_561270.1 CDS Sden_0251 NC_007954.1 287671 288453 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 287671..288453 Shewanella denitrificans OS217 4020362 YP_561271.1 CDS Sden_0252 NC_007954.1 288504 289409 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 288504..289409 Shewanella denitrificans OS217 4020363 YP_561272.1 CDS Sden_0253 NC_007954.1 289500 290723 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 289500..290723 Shewanella denitrificans OS217 4020364 YP_561273.1 CDS Sden_0254 NC_007954.1 290820 292187 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 290820..292187 Shewanella denitrificans OS217 4020365 YP_561274.1 CDS Sden_0255 NC_007954.1 292281 294878 R penicillin-binding protein 1A complement(292281..294878) Shewanella denitrificans OS217 4020366 YP_561275.1 CDS Sden_0256 NC_007954.1 294990 296069 D type IV pilus assembly protein PilM 294990..296069 Shewanella denitrificans OS217 4020367 YP_561276.1 CDS Sden_0257 NC_007954.1 296057 296650 D fimbrial assembly 296057..296650 Shewanella denitrificans OS217 4020368 YP_561277.1 CDS Sden_0258 NC_007954.1 296647 297267 D pilus assembly protein, PilO 296647..297267 Shewanella denitrificans OS217 4020369 YP_561278.1 CDS Sden_0259 NC_007954.1 297267 297785 D pilus assembly protein, PilQ 297267..297785 Shewanella denitrificans OS217 4020370 YP_561279.1 CDS Sden_0260 NC_007954.1 297804 299855 D type II and III secretion system protein 297804..299855 Shewanella denitrificans OS217 4020371 YP_561280.1 CDS aroK NC_007954.1 300156 300671 D type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 300156..300671 Shewanella denitrificans OS217 4020372 YP_561281.1 CDS Sden_0262 NC_007954.1 300680 301753 D 3-dehydroquinate synthase 300680..301753 Shewanella denitrificans OS217 4020373 YP_561282.1 CDS Sden_0263 NC_007954.1 301785 303320 D sporulation related 301785..303320 Shewanella denitrificans OS217 4020374 YP_561283.1 CDS Sden_0264 NC_007954.1 303394 304233 D DNA adenine methylase 303394..304233 Shewanella denitrificans OS217 4020375 YP_561284.1 CDS Sden_0265 NC_007954.1 304306 304488 R hypothetical protein complement(304306..304488) Shewanella denitrificans OS217 4020376 YP_561285.1 CDS Sden_0266 NC_007954.1 304489 304872 R hypothetical protein complement(304489..304872) Shewanella denitrificans OS217 4020377 YP_561286.1 CDS Sden_0267 NC_007954.1 305182 305850 D ribulose-phosphate 3-epimerase 305182..305850 Shewanella denitrificans OS217 4020378 YP_561287.1 CDS Sden_0268 NC_007954.1 305861 306547 D phosphoglycolate phosphatase 305861..306547 Shewanella denitrificans OS217 4020399 YP_561288.1 CDS Sden_0269 NC_007954.1 306596 307594 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 306596..307594 Shewanella denitrificans OS217 4020400 YP_561289.1 CDS Sden_0270 NC_007954.1 307665 308240 R transport-associated complement(307665..308240) Shewanella denitrificans OS217 4020401 YP_561290.1 CDS Sden_0271 NC_007954.1 308240 308830 R phosphoheptose isomerase complement(308240..308830) Shewanella denitrificans OS217 4020402 YP_561291.1 CDS Sden_0272 NC_007954.1 308904 309230 R hypothetical protein complement(308904..309230) Shewanella denitrificans OS217 4020403 YP_561292.1 CDS Sden_0273 NC_007954.1 309227 311038 R LppC lipoprotein complement(309227..311038) Shewanella denitrificans OS217 4020404 YP_561293.1 CDS Sden_0274 NC_007954.1 311154 311996 D hypothetical protein 311154..311996 Shewanella denitrificans OS217 4020405 YP_561294.1 CDS Sden_0275 NC_007954.1 313011 313502 D hypothetical protein 313011..313502 Shewanella denitrificans OS217 4020407 YP_561295.1 CDS Sden_0276 NC_007954.1 313518 313748 R hypothetical protein complement(313518..313748) Shewanella denitrificans OS217 4020408 YP_561296.1 CDS Sden_0277 NC_007954.1 313887 314087 R hypothetical protein complement(313887..314087) Shewanella denitrificans OS217 4020409 YP_561297.1 CDS Sden_0278 NC_007954.1 314329 314865 D hypothetical protein 314329..314865 Shewanella denitrificans OS217 4020410 YP_561298.1 CDS Sden_0279 NC_007954.1 314994 315566 R hypothetical protein complement(314994..315566) Shewanella denitrificans OS217 4020411 YP_561299.1 CDS Sden_0280 NC_007954.1 315663 317738 R peptidase S9, prolyl oligopeptidase active site region complement(315663..317738) Shewanella denitrificans OS217 4020412 YP_561300.1 CDS Sden_0281 NC_007954.1 318090 318881 D hypothetical protein 318090..318881 Shewanella denitrificans OS217 4020413 YP_561301.1 CDS Sden_0282 NC_007954.1 319081 319437 D hypothetical protein 319081..319437 Shewanella denitrificans OS217 4020414 YP_561302.1 CDS Sden_0283 NC_007954.1 319489 319809 D hypothetical protein 319489..319809 Shewanella denitrificans OS217 4020415 YP_561303.1 CDS Sden_0284 NC_007954.1 319802 320791 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 319802..320791 Shewanella denitrificans OS217 4020416 YP_561304.1 CDS Sden_0285 NC_007954.1 320939 321550 D DSBA oxidoreductase 320939..321550 Shewanella denitrificans OS217 4020417 YP_561305.1 CDS Sden_0286 NC_007954.1 321952 322155 D hypothetical protein 321952..322155 Shewanella denitrificans OS217 4019790 YP_561306.1 CDS Sden_0287 NC_007954.1 322152 322352 R hypothetical protein complement(322152..322352) Shewanella denitrificans OS217 4019791 YP_561307.1 CDS Sden_0288 NC_007954.1 322655 323005 D endoribonuclease L-PSP 322655..323005 Shewanella denitrificans OS217 4019792 YP_561308.1 CDS Sden_0289 NC_007954.1 323184 324275 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 323184..324275 Shewanella denitrificans OS217 4019793 YP_561309.1 CDS Sden_0290 NC_007954.1 324324 324479 R nuclease complement(324324..324479) Shewanella denitrificans OS217 4019794 YP_561310.1 CDS Sden_0291 NC_007954.1 324467 324979 R ERCC4 complement(324467..324979) Shewanella denitrificans OS217 4019795 YP_561311.1 CDS Sden_0292 NC_007954.1 325245 326243 D metal-binding protein 325245..326243 Shewanella denitrificans OS217 4019796 YP_561312.1 CDS Sden_0293 NC_007954.1 326436 326696 D hypothetical protein 326436..326696 Shewanella denitrificans OS217 4019797 YP_561313.1 CDS Sden_0294 NC_007954.1 326962 328041 D filamentation induced by cAMP protein Fic 326962..328041 Shewanella denitrificans OS217 4019798 YP_561314.1 CDS Sden_0296 NC_007954.1 328711 330219 D hypothetical protein 328711..330219 Shewanella denitrificans OS217 4019800 YP_561315.1 CDS Sden_0297 NC_007954.1 330281 330883 R hypothetical protein complement(330281..330883) Shewanella denitrificans OS217 4019801 YP_561316.1 CDS Sden_0298 NC_007954.1 331141 332454 R hypothetical protein complement(331141..332454) Shewanella denitrificans OS217 4019802 YP_561317.1 CDS Sden_0299 NC_007954.1 332784 333308 D hypothetical protein 332784..333308 Shewanella denitrificans OS217 4019803 YP_561318.1 CDS Sden_0300 NC_007954.1 333337 334224 D hypothetical protein 333337..334224 Shewanella denitrificans OS217 4019804 YP_561319.1 CDS Sden_0301 NC_007954.1 334795 337950 D type III restriction enzyme, res subunit 334795..337950 Shewanella denitrificans OS217 4019805 YP_561320.1 CDS Sden_0302 NC_007954.1 338252 338395 R hypothetical protein complement(338252..338395) Shewanella denitrificans OS217 4019806 YP_561321.1 CDS Sden_0303 NC_007954.1 338674 339672 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 338674..339672 Shewanella denitrificans OS217 4019807 YP_561322.1 CDS Sden_0304 NC_007954.1 339732 340553 D hypothetical protein 339732..340553 Shewanella denitrificans OS217 4019808 YP_561323.1 CDS Sden_0305 NC_007954.1 340617 341345 D hypothetical protein 340617..341345 Shewanella denitrificans OS217 4020418 YP_561324.1 CDS Sden_0306 NC_007954.1 341656 341937 D transciptional regulator 341656..341937 Shewanella denitrificans OS217 4020419 YP_561325.1 CDS Sden_0307 NC_007954.1 341937 343244 D HipA-like protein 341937..343244 Shewanella denitrificans OS217 4020420 YP_561326.1 CDS Sden_0308 NC_007954.1 343856 347116 R hypothetical protein complement(343856..347116) Shewanella denitrificans OS217 4020421 YP_561327.1 CDS Sden_0309 NC_007954.1 347129 349204 R hypothetical protein complement(347129..349204) Shewanella denitrificans OS217 4020422 YP_561328.1 CDS Sden_0310 NC_007954.1 349204 351003 R DNA methylase N-4/N-6 complement(349204..351003) Shewanella denitrificans OS217 4020423 YP_561329.1 CDS Sden_0311 NC_007954.1 351243 351860 R hypothetical protein complement(351243..351860) Shewanella denitrificans OS217 4020424 YP_561330.1 CDS Sden_0312 NC_007954.1 352296 352925 R phage integrase complement(352296..352925) Shewanella denitrificans OS217 4020425 YP_561331.1 CDS Sden_0313 NC_007954.1 353369 353827 R hypothetical protein complement(353369..353827) Shewanella denitrificans OS217 4020426 YP_561332.1 CDS Sden_0314 NC_007954.1 353886 354158 R hypothetical protein complement(353886..354158) Shewanella denitrificans OS217 4020427 YP_561333.1 CDS Sden_0315 NC_007954.1 354155 354451 R prophage CP4-57 regulatory complement(354155..354451) Shewanella denitrificans OS217 4020428 YP_561334.1 CDS Sden_0316 NC_007954.1 354549 355280 R hypothetical protein complement(354549..355280) Shewanella denitrificans OS217 4020429 YP_561335.1 CDS Sden_0317 NC_007954.1 355277 356491 R phage integrase complement(355277..356491) Shewanella denitrificans OS217 4020430 YP_561336.1 CDS Sden_0318 NC_007954.1 356660 357523 R hypothetical protein complement(356660..357523) Shewanella denitrificans OS217 4020431 YP_561337.1 CDS rph NC_007954.1 357751 358464 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 357751..358464 Shewanella denitrificans OS217 4020432 YP_561338.1 CDS pyrE NC_007954.1 358537 359178 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 358537..359178 Shewanella denitrificans OS217 4020433 YP_561339.1 CDS folE NC_007954.1 359333 359986 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(359333..359986) Shewanella denitrificans OS217 4020434 YP_561340.1 CDS Sden_0322 NC_007954.1 360166 362127 R peptidase S9, prolyl oligopeptidase active site region complement(360166..362127) Shewanella denitrificans OS217 4020435 YP_561341.1 CDS slmA NC_007954.1 362232 362825 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(362232..362825) Shewanella denitrificans OS217 4020436 YP_561342.1 CDS dut NC_007954.1 362861 363319 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(362861..363319) Shewanella denitrificans OS217 4020437 YP_561343.1 CDS Sden_0325 NC_007954.1 363316 364509 R phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(363316..364509) Shewanella denitrificans OS217 4020341 YP_561344.1 CDS radC NC_007954.1 364641 365318 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 364641..365318 Shewanella denitrificans OS217 4020342 YP_561345.1 CDS Sden_0327 NC_007954.1 365355 365675 D ribosomal protein L28 365355..365675 Shewanella denitrificans OS217 4020343 YP_561346.1 CDS rpmG NC_007954.1 365682 365855 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 365682..365855 Shewanella denitrificans OS217 4020344 YP_561347.1 CDS Sden_0329 NC_007954.1 366115 367434 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 366115..367434 Shewanella denitrificans OS217 4020345 YP_561348.1 CDS Sden_0330 NC_007954.1 367537 368439 R rarD protein complement(367537..368439) Shewanella denitrificans OS217 4020346 YP_561349.1 CDS Sden_0331 NC_007954.1 368582 369046 R hypothetical protein complement(368582..369046) Shewanella denitrificans OS217 4020347 YP_561350.1 CDS Sden_0332 NC_007954.1 369240 371081 D ATP-dependent DNA helicase RecQ 369240..371081 Shewanella denitrificans OS217 4020348 YP_561351.1 CDS Sden_0333 NC_007954.1 371096 372814 R tetratricopeptide TPR_2 complement(371096..372814) Shewanella denitrificans OS217 4020349 YP_561352.1 CDS Sden_0334 NC_007954.1 373329 374897 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 373329..374897 Shewanella denitrificans OS217 4020350 YP_561353.1 CDS Sden_0335 NC_007954.1 374894 375988 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 374894..375988 Shewanella denitrificans OS217 4020351 YP_561354.1 CDS Sden_0336 NC_007954.1 375988 377436 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 375988..377436 Shewanella denitrificans OS217 4020352 YP_561355.1 CDS leuD NC_007954.1 377452 378057 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 377452..378057 Shewanella denitrificans OS217 4020353 YP_561356.1 CDS Sden_0338 NC_007954.1 378097 378369 R hypothetical protein complement(378097..378369) Shewanella denitrificans OS217 4020354 YP_561357.1 CDS Sden_0339 NC_007954.1 378604 379833 D signal transduction protein 378604..379833 Shewanella denitrificans OS217 4020355 YP_561358.1 CDS Sden_0340 NC_007954.1 380353 381705 D aromatic hydrocarbon degradation membrane protein 380353..381705 Shewanella denitrificans OS217 4020356 YP_561359.1 CDS Sden_0341 NC_007954.1 381849 382292 D hypothetical protein 381849..382292 Shewanella denitrificans OS217 4020357 YP_561360.1 CDS Sden_0342 NC_007954.1 382390 383883 D glycerol kinase 382390..383883 Shewanella denitrificans OS217 4020358 YP_561361.1 CDS Sden_0343 NC_007954.1 383931 384275 R hypothetical protein complement(383931..384275) Shewanella denitrificans OS217 4020359 YP_561362.1 CDS Sden_0344 NC_007954.1 384337 385473 R ferredoxin complement(384337..385473) Shewanella denitrificans OS217 4017867 YP_561363.1 CDS Sden_0345 NC_007954.1 385473 386216 R PepSY-associated TM helix complement(385473..386216) Shewanella denitrificans OS217 4017868 YP_561364.1 CDS Sden_0346 NC_007954.1 386597 387055 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 386597..387055 Shewanella denitrificans OS217 4017869 YP_561365.1 CDS mraW NC_007954.1 387083 388024 D S-adenosyl-methyltransferase MraW 387083..388024 Shewanella denitrificans OS217 4017870 YP_561366.1 CDS Sden_0348 NC_007954.1 388039 388353 D cell division protein, FtsL -like protein 388039..388353 Shewanella denitrificans OS217 4017871 YP_561367.1 CDS Sden_0349 NC_007954.1 388364 390109 D peptidoglycan glycosyltransferase 388364..390109 Shewanella denitrificans OS217 4017872 YP_561368.1 CDS murE NC_007954.1 390106 391614 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 390106..391614 Shewanella denitrificans OS217 4017873 YP_561369.1 CDS Sden_0351 NC_007954.1 391611 392984 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 391611..392984 Shewanella denitrificans OS217 4017874 YP_561370.1 CDS mraY NC_007954.1 392985 394067 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 392985..394067 Shewanella denitrificans OS217 4017875 YP_561371.1 CDS murD NC_007954.1 394074 395396 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 394074..395396 Shewanella denitrificans OS217 4017876 YP_561372.1 CDS Sden_0354 NC_007954.1 395386 396600 D phosphopantetheine attachment site 395386..396600 Shewanella denitrificans OS217 4017877 YP_561373.1 CDS murG NC_007954.1 396600 397700 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 396600..397700 Shewanella denitrificans OS217 4017878 YP_561374.1 CDS murC NC_007954.1 397702 399141 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 397702..399141 Shewanella denitrificans OS217 4017879 YP_561375.1 CDS Sden_0357 NC_007954.1 399274 400026 D cell division protein FtsQ 399274..400026 Shewanella denitrificans OS217 4017880 YP_561376.1 CDS Sden_0358 NC_007954.1 400042 401277 D cell division protein FtsA 400042..401277 Shewanella denitrificans OS217 4017881 YP_561377.1 CDS Sden_0359 NC_007954.1 401304 402491 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 401304..402491 Shewanella denitrificans OS217 4017882 YP_561378.1 CDS lpxC NC_007954.1 402712 403632 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 402712..403632 Shewanella denitrificans OS217 4017883 YP_561379.1 CDS Sden_0361 NC_007954.1 403637 404089 R hypothetical protein complement(403637..404089) Shewanella denitrificans OS217 4017884 YP_561380.1 CDS Sden_0362 NC_007954.1 404117 405016 D peptidase M23B 404117..405016 Shewanella denitrificans OS217 4017885 YP_561381.1 CDS Sden_0363 NC_007954.1 405074 407797 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 405074..407797 Shewanella denitrificans OS217 4017886 YP_561382.1 CDS Sden_0364 NC_007954.1 414806 416008 D transposase, mutator type 414806..416008 Shewanella denitrificans OS217 4016690 YP_561383.1 CDS Sden_0365 NC_007954.1 415860 416768 R integrase catalytic subunit complement(415860..416768) Shewanella denitrificans OS217 4016691 YP_561384.1 CDS Sden_0366 NC_007954.1 416765 417076 R glycine betaine/choline/proline transport system permease protein complement(416765..417076) Shewanella denitrificans OS217 4016692 YP_561385.1 CDS Sden_0367 NC_007954.1 417448 417951 R divergent AAA region complement(417448..417951) Shewanella denitrificans OS217 4016693 YP_561386.1 CDS Sden_0368 NC_007954.1 418272 420098 D potassium efflux system protein 418272..420098 Shewanella denitrificans OS217 4016694 YP_561387.1 CDS Sden_0369 NC_007954.1 420173 421483 R FAD dependent oxidoreductase complement(420173..421483) Shewanella denitrificans OS217 4016695 YP_561388.1 CDS Sden_0370 NC_007954.1 421588 422430 R hypothetical protein complement(421588..422430) Shewanella denitrificans OS217 4016696 YP_561389.1 CDS Sden_0371 NC_007954.1 422526 425273 R hypothetical protein complement(422526..425273) Shewanella denitrificans OS217 4016697 YP_561390.1 CDS Sden_0372 NC_007954.1 425545 426099 D hypothetical protein 425545..426099 Shewanella denitrificans OS217 4016698 YP_561391.1 CDS Sden_0373 NC_007954.1 426188 426667 R globin complement(426188..426667) Shewanella denitrificans OS217 4016699 YP_561392.1 CDS Sden_0374 NC_007954.1 426664 427536 R hypothetical protein complement(426664..427536) Shewanella denitrificans OS217 4016700 YP_561393.1 CDS Sden_0375 NC_007954.1 427546 429834 R GGDEF domain-containing protein complement(427546..429834) Shewanella denitrificans OS217 4017509 YP_561394.1 CDS Sden_0376 NC_007954.1 429834 430517 R hypothetical protein complement(429834..430517) Shewanella denitrificans OS217 4017510 YP_561395.1 CDS Sden_0377 NC_007954.1 430704 431129 R OsmC-like protein complement(430704..431129) Shewanella denitrificans OS217 4017511 YP_561396.1 CDS Sden_0378 NC_007954.1 431506 433428 R histidine kinase complement(431506..433428) Shewanella denitrificans OS217 4017512 YP_561397.1 CDS Sden_0379 NC_007954.1 433437 434150 R hypothetical protein complement(433437..434150) Shewanella denitrificans OS217 4017513 YP_561398.1 CDS Sden_0380 NC_007954.1 434295 434900 R OmpA/MotB complement(434295..434900) Shewanella denitrificans OS217 4017514 YP_561399.1 CDS Sden_0381 NC_007954.1 434897 436303 R Type I secretion outer membrane protein, TolC complement(434897..436303) Shewanella denitrificans OS217 4017515 YP_561400.1 CDS Sden_0382 NC_007954.1 436330 437712 R Type I secretion membrane fusion protein, HlyD complement(436330..437712) Shewanella denitrificans OS217 4017516 YP_561401.1 CDS Sden_0383 NC_007954.1 437702 439885 R ABC transporter related complement(437702..439885) Shewanella denitrificans OS217 4017517 YP_561402.1 CDS Sden_0384 NC_007954.1 439984 452841 R hypothetical protein complement(439984..452841) Shewanella denitrificans OS217 4017518 YP_561403.1 CDS Sden_0385 NC_007954.1 453185 454375 R HemY-like protein complement(453185..454375) Shewanella denitrificans OS217 4017519 YP_561404.1 CDS Sden_0386 NC_007954.1 454372 455583 R hypothetical protein complement(454372..455583) Shewanella denitrificans OS217 4017520 YP_561405.1 CDS Sden_0387 NC_007954.1 455744 456460 R uroporphyrinogen III synthase HEM4 complement(455744..456460) Shewanella denitrificans OS217 4017521 YP_561406.1 CDS hemC NC_007954.1 456537 457484 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(456537..457484) Shewanella denitrificans OS217 4017522 YP_561407.1 CDS Sden_0389 NC_007954.1 457673 458008 R frataxin-like protein complement(457673..458008) Shewanella denitrificans OS217 4017523 YP_561408.1 CDS Sden_0390 NC_007954.1 458293 459537 D diaminopimelate decarboxylase 458293..459537 Shewanella denitrificans OS217 4017524 YP_561409.1 CDS dapF NC_007954.1 459600 460427 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 459600..460427 Shewanella denitrificans OS217 4017525 YP_561410.1 CDS Sden_0392 NC_007954.1 460577 461197 D hypothetical protein 460577..461197 Shewanella denitrificans OS217 4017526 YP_561411.1 CDS Sden_0393 NC_007954.1 461274 462239 D tyrosine recombinase XerC 461274..462239 Shewanella denitrificans OS217 4017527 YP_561412.1 CDS Sden_0394 NC_007954.1 462236 462949 D HAD family hydrolase 462236..462949 Shewanella denitrificans OS217 4017528 YP_561413.1 CDS Sden_0395 NC_007954.1 462985 463488 R divergent AAA region complement(462985..463488) Shewanella denitrificans OS217 4017141 YP_561414.1 CDS Sden_0397 NC_007954.1 464657 465145 R kelch repeat-containing protein complement(464657..465145) Shewanella denitrificans OS217 4017143 YP_561415.1 CDS Sden_0398 NC_007954.1 465147 465380 R hypothetical protein complement(465147..465380) Shewanella denitrificans OS217 4017144 YP_561416.1 CDS Sden_0399 NC_007954.1 465493 466359 D threonine dehydratase, biosynthetic 465493..466359 Shewanella denitrificans OS217 4017145 YP_561417.1 CDS Sden_0400 NC_007954.1 466554 467162 D Abi-like protein 466554..467162 Shewanella denitrificans OS217 4017146 YP_561418.1 CDS Sden_0401 NC_007954.1 467151 468092 R integrase catalytic subunit complement(467151..468092) Shewanella denitrificans OS217 4017147 YP_561419.1 CDS Sden_0403 NC_007954.1 469009 469263 R hypothetical protein complement(469009..469263) Shewanella denitrificans OS217 4017149 YP_561420.1 CDS Sden_0404 NC_007954.1 469806 470945 D Serine--pyruvate transaminase 469806..470945 Shewanella denitrificans OS217 4017150 YP_561421.1 CDS Sden_0405 NC_007954.1 471095 471349 R hypothetical protein complement(471095..471349) Shewanella denitrificans OS217 4017151 YP_561422.1 CDS Sden_0406 NC_007954.1 471508 473520 D ATP-dependent DNA helicase Rep 471508..473520 Shewanella denitrificans OS217 4017152 YP_561423.1 CDS Sden_0407 NC_007954.1 473596 476217 R GGDEF domain-containing protein complement(473596..476217) Shewanella denitrificans OS217 4017153 YP_561424.1 CDS Sden_0408 NC_007954.1 477458 477967 R orphan protein complement(477458..477967) Shewanella denitrificans OS217 4017830 YP_561425.1 CDS Sden_0409 NC_007954.1 477967 480414 R Zn-dependent aminopeptidase complement(477967..480414) Shewanella denitrificans OS217 4017831 YP_561426.1 CDS Sden_0410 NC_007954.1 480599 481354 R cation efflux protein complement(480599..481354) Shewanella denitrificans OS217 4017832 YP_561427.1 CDS Sden_0411 NC_007954.1 481515 482504 D zinc-binding alcohol dehydrogenase 481515..482504 Shewanella denitrificans OS217 4017833 YP_561428.1 CDS Sden_0412 NC_007954.1 482830 483255 D hypothetical protein 482830..483255 Shewanella denitrificans OS217 4017834 YP_561429.1 CDS Sden_0413 NC_007954.1 483608 484636 R aldose 1-epimerase complement(483608..484636) Shewanella denitrificans OS217 4017835 YP_561430.1 CDS Sden_0414 NC_007954.1 484666 485811 R galactokinase complement(484666..485811) Shewanella denitrificans OS217 4017836 YP_561431.1 CDS Sden_0415 NC_007954.1 486037 487716 R sodium/hydrogen exchanger complement(486037..487716) Shewanella denitrificans OS217 4017837 YP_561432.1 CDS dipZ NC_007954.1 487859 489733 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor complement(487859..489733) Shewanella denitrificans OS217 4017838 YP_561433.1 CDS Sden_0417 NC_007954.1 489730 490053 R CutA1 divalent ion tolerance protein complement(489730..490053) Shewanella denitrificans OS217 4017839 YP_561434.1 CDS Sden_0418 NC_007954.1 490338 490991 D FxsA cytoplasmic membrane protein 490338..490991 Shewanella denitrificans OS217 4017840 YP_561435.1 CDS Sden_0419 NC_007954.1 491176 491523 R hypothetical protein complement(491176..491523) Shewanella denitrificans OS217 4017841 YP_561436.1 CDS Sden_0420 NC_007954.1 491573 492952 R MATE efflux family protein complement(491573..492952) Shewanella denitrificans OS217 4017842 YP_561437.1 CDS groES NC_007954.1 493178 493468 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 493178..493468 Shewanella denitrificans OS217 4017843 YP_561438.1 CDS groEL NC_007954.1 493528 495165 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 493528..495165 Shewanella denitrificans OS217 4017844 YP_561439.1 CDS Sden_0423 NC_007954.1 495624 496205 D hypothetical protein 495624..496205 Shewanella denitrificans OS217 4017845 YP_561440.1 CDS Sden_0424 NC_007954.1 496341 496631 D transposase IS3/IS911 496341..496631 Shewanella denitrificans OS217 4017846 YP_561441.1 CDS Sden_0425 NC_007954.1 496691 497500 D integrase catalytic subunit 496691..497500 Shewanella denitrificans OS217 4017959 YP_561442.1 CDS Sden_0426 NC_007954.1 497477 497833 R Abi-like protein complement(497477..497833) Shewanella denitrificans OS217 4017960 YP_561443.1 CDS Sden_0427 NC_007954.1 498202 498450 D transciptional regulator 498202..498450 Shewanella denitrificans OS217 4017961 YP_561444.1 CDS Sden_0429 NC_007954.1 498966 500912 R GGDEF domain-containing protein complement(498966..500912) Shewanella denitrificans OS217 4017963 YP_561445.1 CDS Sden_0430 NC_007954.1 500909 502507 R GGDEF domain-containing protein complement(500909..502507) Shewanella denitrificans OS217 4017964 YP_561446.1 CDS Sden_0431 NC_007954.1 502500 502937 R hypothetical protein complement(502500..502937) Shewanella denitrificans OS217 4017965 YP_561447.1 CDS Sden_0432 NC_007954.1 502937 504181 R hypothetical protein complement(502937..504181) Shewanella denitrificans OS217 4017966 YP_561448.1 CDS Sden_0433 NC_007954.1 504413 504568 D Cro/CI family transcriptional regulator 504413..504568 Shewanella denitrificans OS217 4017967 YP_561449.1 CDS Sden_0434 NC_007954.1 504695 505603 R TonB-like protein complement(504695..505603) Shewanella denitrificans OS217 4017968 YP_561450.1 CDS Sden_0435 NC_007954.1 505627 505893 R hypothetical protein complement(505627..505893) Shewanella denitrificans OS217 4017969 YP_561451.1 CDS Sden_0436 NC_007954.1 506071 506559 R hypothetical protein complement(506071..506559) Shewanella denitrificans OS217 4017970 YP_561452.1 CDS Sden_0437 NC_007954.1 506724 509012 R transcriptional regulatory protein-like protein complement(506724..509012) Shewanella denitrificans OS217 4017971 YP_561453.1 CDS Sden_0438 NC_007954.1 509271 510155 D WD-40-like beta propeller repeat-containing protein 509271..510155 Shewanella denitrificans OS217 4017972 YP_561454.1 CDS Sden_0439 NC_007954.1 510180 511100 D WD-40-like beta propeller repeat-containing protein 510180..511100 Shewanella denitrificans OS217 4017973 YP_561455.1 CDS Sden_0440 NC_007954.1 511241 511519 R hypothetical protein complement(511241..511519) Shewanella denitrificans OS217 4017974 YP_561456.1 CDS Sden_0441 NC_007954.1 511721 512440 R cold-shock protein, DNA-binding complement(511721..512440) Shewanella denitrificans OS217 4017975 YP_561457.1 CDS Sden_0442 NC_007954.1 512694 513773 R choloylglycine hydrolase complement(512694..513773) Shewanella denitrificans OS217 4017976 YP_561458.1 CDS Sden_0443 NC_007954.1 513867 514880 D GGDEF domain-containing protein 513867..514880 Shewanella denitrificans OS217 4017977 YP_561459.1 CDS fis NC_007954.1 515109 515414 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(515109..515414) Shewanella denitrificans OS217 4017978 YP_561460.1 CDS Sden_0445 NC_007954.1 515431 516399 R dihydrouridine synthase TIM-barrel protein nifR3 complement(515431..516399) Shewanella denitrificans OS217 4017216 YP_561461.1 CDS prmA NC_007954.1 516676 517557 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(516676..517557) Shewanella denitrificans OS217 4017217 YP_561462.1 CDS rho NC_007954.1 517684 518949 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(517684..518949) Shewanella denitrificans OS217 4017218 YP_561463.1 CDS Sden_0448 NC_007954.1 519163 519489 R thioredoxin complement(519163..519489) Shewanella denitrificans OS217 4017219 YP_561464.1 CDS Sden_0449 NC_007954.1 519642 520940 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 519642..520940 Shewanella denitrificans OS217 4017220 YP_561465.1 CDS Sden_0450 NC_007954.1 520941 521873 D guanosine-5'-triphosphate,3'-diphosphate diphosphatase 520941..521873 Shewanella denitrificans OS217 4017221 YP_561466.1 CDS Sden_0451 NC_007954.1 521977 522384 R hypothetical protein complement(521977..522384) Shewanella denitrificans OS217 4017222 YP_561467.1 CDS Sden_0452 NC_007954.1 522384 523394 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(522384..523394) Shewanella denitrificans OS217 4017223 YP_561468.1 CDS Sden_0453 NC_007954.1 523412 525337 R GGDEF domain-containing protein complement(523412..525337) Shewanella denitrificans OS217 4017224 YP_561469.1 CDS Sden_0454 NC_007954.1 525334 526134 R TatD-related deoxyribonuclease complement(525334..526134) Shewanella denitrificans OS217 4017225 YP_561470.1 CDS Sden_0455 NC_007954.1 526135 526644 R hypothetical protein complement(526135..526644) Shewanella denitrificans OS217 4017226 YP_561471.1 CDS Sden_0456 NC_007954.1 526709 527494 R Sec-independent protein translocase TatC complement(526709..527494) Shewanella denitrificans OS217 4017227 YP_561472.1 CDS Sden_0457 NC_007954.1 527498 527896 R twin-arginine translocation protein TatB complement(527498..527896) Shewanella denitrificans OS217 4017228 YP_561473.1 CDS Sden_0458 NC_007954.1 527903 528142 R twin arginine-targeting protein translocase complement(527903..528142) Shewanella denitrificans OS217 4017229 YP_561474.1 CDS Sden_0459 NC_007954.1 528246 529895 R 2-polyprenylphenol 6-hydroxylase complement(528246..529895) Shewanella denitrificans OS217 4017230 YP_561475.1 CDS Sden_0460 NC_007954.1 529892 530512 R hypothetical protein complement(529892..530512) Shewanella denitrificans OS217 4017231 YP_561476.1 CDS Sden_0461 NC_007954.1 530512 531267 R ubiquinone/menaquinone biosynthesis methyltransferases complement(530512..531267) Shewanella denitrificans OS217 4017232 YP_561477.1 CDS Sden_0462 NC_007954.1 531373 532389 R arginase/agmatinase/formiminoglutamase complement(531373..532389) Shewanella denitrificans OS217 4017233 YP_561478.1 CDS Sden_0463 NC_007954.1 532553 533038 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(532553..533038) Shewanella denitrificans OS217 4017234 YP_561479.1 CDS Sden_0464 NC_007954.1 533413 533667 D hypothetical protein 533413..533667 Shewanella denitrificans OS217 4016647 YP_561480.1 CDS Sden_0465 NC_007954.1 533908 534507 D phosphoesterase, PA-phosphatase related 533908..534507 Shewanella denitrificans OS217 4016648 YP_561481.1 CDS Sden_0466 NC_007954.1 534552 535607 D hypothetical protein 534552..535607 Shewanella denitrificans OS217 4016649 YP_561482.1 CDS Sden_0467 NC_007954.1 535765 536232 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(535765..536232) Shewanella denitrificans OS217 4016650 YP_561483.1 CDS hemE NC_007954.1 536786 537850 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 536786..537850 Shewanella denitrificans OS217 4016651 YP_561484.1 CDS Sden_0469 NC_007954.1 538084 539430 D glycerophosphoryl diester phosphodiesterase 538084..539430 Shewanella denitrificans OS217 4016652 YP_561485.1 CDS Sden_0470 NC_007954.1 539772 541763 D TonB-dependent copper receptor 539772..541763 Shewanella denitrificans OS217 4016653 YP_561486.1 CDS Sden_0471 NC_007954.1 541895 543745 R beta-lactamase complement(541895..543745) Shewanella denitrificans OS217 4016654 YP_561487.1 CDS Sden_0472 NC_007954.1 543804 544385 R hypothetical protein complement(543804..544385) Shewanella denitrificans OS217 4016655 YP_561488.1 CDS Sden_0473 NC_007954.1 544388 544717 R transcriptional regulator PadR-like protein complement(544388..544717) Shewanella denitrificans OS217 4016656 YP_561489.1 CDS Sden_0474 NC_007954.1 544986 547073 R ABC transporter related complement(544986..547073) Shewanella denitrificans OS217 4016657 YP_561490.1 CDS Sden_0475 NC_007954.1 547127 547555 R hypothetical protein complement(547127..547555) Shewanella denitrificans OS217 4016658 YP_561491.1 CDS Sden_0476 NC_007954.1 547921 549162 R secretion protein HlyD complement(547921..549162) Shewanella denitrificans OS217 4016659 YP_561492.1 CDS Sden_0477 NC_007954.1 549598 550722 R transposase, IS4 complement(549598..550722) Shewanella denitrificans OS217 4016660 YP_561493.1 CDS Sden_0478 NC_007954.1 550984 551904 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(550984..551904) Shewanella denitrificans OS217 4016661 YP_561494.1 CDS Sden_0479 NC_007954.1 552022 552486 R hypothetical protein complement(552022..552486) Shewanella denitrificans OS217 4016662 YP_561495.1 CDS Sden_0480 NC_007954.1 552795 553844 D hypothetical protein 552795..553844 Shewanella denitrificans OS217 4016663 YP_561496.1 CDS Sden_0481 NC_007954.1 553997 554575 D ATP-dependent protease La 553997..554575 Shewanella denitrificans OS217 4016664 YP_561497.1 CDS Sden_0482 NC_007954.1 554658 555596 D pseudouridine synthase 554658..555596 Shewanella denitrificans OS217 4016665 YP_561498.1 CDS ubiA NC_007954.1 555602 556510 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(555602..556510) Shewanella denitrificans OS217 4016666 YP_561499.1 CDS uvrD NC_007954.1 556553 558721 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(556553..558721) Shewanella denitrificans OS217 4017774 YP_561500.1 CDS Sden_0485 NC_007954.1 558779 559054 R phosphotransferase system, HPr complement(558779..559054) Shewanella denitrificans OS217 4017775 YP_561501.1 CDS Sden_0486 NC_007954.1 559076 559930 R hypothetical protein complement(559076..559930) Shewanella denitrificans OS217 4017776 YP_561502.1 CDS Sden_0487 NC_007954.1 559927 560370 R PTS IIA-like nitrogen-regulatory protein PtsN complement(559927..560370) Shewanella denitrificans OS217 4017777 YP_561503.1 CDS Sden_0488 NC_007954.1 560373 560660 R ribosomal subunit interface protein complement(560373..560660) Shewanella denitrificans OS217 4017778 YP_561504.1 CDS Sden_0489 NC_007954.1 560687 562168 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(560687..562168) Shewanella denitrificans OS217 4017779 YP_561505.1 CDS Sden_0490 NC_007954.1 562255 562986 R ABC transporter related complement(562255..562986) Shewanella denitrificans OS217 4017780 YP_561506.1 CDS Sden_0491 NC_007954.1 562983 563537 R OstA-like protein complement(562983..563537) Shewanella denitrificans OS217 4017781 YP_561507.1 CDS Sden_0492 NC_007954.1 563524 564084 R hypothetical protein complement(563524..564084) Shewanella denitrificans OS217 4017782 YP_561508.1 CDS Sden_0493 NC_007954.1 564081 564632 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(564081..564632) Shewanella denitrificans OS217 4017783 YP_561509.1 CDS Sden_0494 NC_007954.1 564634 565611 R KpsF/GutQ family protein complement(564634..565611) Shewanella denitrificans OS217 4017784 YP_561510.1 CDS Sden_0495 NC_007954.1 565676 566638 R K+-dependent Na+/Ca+ exchanger related-protein complement(565676..566638) Shewanella denitrificans OS217 4017785 YP_561511.1 CDS Sden_0496 NC_007954.1 566822 567643 D ABC transporter related 566822..567643 Shewanella denitrificans OS217 4017786 YP_561512.1 CDS Sden_0497 NC_007954.1 567636 568433 D hypothetical protein 567636..568433 Shewanella denitrificans OS217 4017787 YP_561513.1 CDS Sden_0498 NC_007954.1 568521 568994 D hypothetical protein 568521..568994 Shewanella denitrificans OS217 4017788 YP_561514.1 CDS Sden_0499 NC_007954.1 569006 569659 D toluene tolerance 569006..569659 Shewanella denitrificans OS217 4017789 YP_561515.1 CDS Sden_0500 NC_007954.1 569656 569952 D SpoIIAA family protein 569656..569952 Shewanella denitrificans OS217 4017790 YP_561516.1 CDS Sden_0501 NC_007954.1 570014 570265 D BolA-like protein 570014..570265 Shewanella denitrificans OS217 4017791 YP_561517.1 CDS Sden_0502 NC_007954.1 570281 571540 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 570281..571540 Shewanella denitrificans OS217 4017792 YP_561518.1 CDS Sden_0503 NC_007954.1 571655 572731 R peptidase S1C, DegS complement(571655..572731) Shewanella denitrificans OS217 4017102 YP_561519.1 CDS Sden_0504 NC_007954.1 572895 574256 R peptidase S1C, Do complement(572895..574256) Shewanella denitrificans OS217 4017103 YP_561520.1 CDS Sden_0505 NC_007954.1 574564 575676 D AFG1-like ATPase 574564..575676 Shewanella denitrificans OS217 4017104 YP_561521.1 CDS rplM NC_007954.1 575953 576381 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 575953..576381 Shewanella denitrificans OS217 4017105 YP_561522.1 CDS rpsI NC_007954.1 576396 576788 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 576396..576788 Shewanella denitrificans OS217 4017106 YP_561523.1 CDS Sden_0508 NC_007954.1 576795 577067 D hypothetical protein 576795..577067 Shewanella denitrificans OS217 4017107 YP_561524.1 CDS Sden_0509 NC_007954.1 577135 578430 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 577135..578430 Shewanella denitrificans OS217 4017108 YP_561525.1 CDS Sden_0510 NC_007954.1 578546 579163 D Sel1 578546..579163 Shewanella denitrificans OS217 4017109 YP_561526.1 CDS Sden_0511 NC_007954.1 579199 581652 D ribonuclease R 579199..581652 Shewanella denitrificans OS217 4017110 YP_561527.1 CDS Sden_0512 NC_007954.1 581674 582414 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 581674..582414 Shewanella denitrificans OS217 4017111 YP_561528.1 CDS Sden_0513 NC_007954.1 582500 583879 R major facilitator transporter complement(582500..583879) Shewanella denitrificans OS217 4017112 YP_561529.1 CDS Sden_0514 NC_007954.1 583973 584728 R hypothetical protein complement(583973..584728) Shewanella denitrificans OS217 4017113 YP_561530.1 CDS rpsF NC_007954.1 584952 585344 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 584952..585344 Shewanella denitrificans OS217 4017114 YP_561531.1 CDS Sden_0516 NC_007954.1 585353 585655 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 585353..585655 Shewanella denitrificans OS217 4017115 YP_561532.1 CDS rpsR NC_007954.1 585668 585895 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 585668..585895 Shewanella denitrificans OS217 4017116 YP_561533.1 CDS rplI NC_007954.1 585936 586388 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 585936..586388 Shewanella denitrificans OS217 4017117 YP_561534.1 CDS Sden_0519 NC_007954.1 586461 586736 R hypothetical protein complement(586461..586736) Shewanella denitrificans OS217 4017118 YP_561535.1 CDS Sden_0520 NC_007954.1 587850 590045 R hypothetical protein complement(587850..590045) Shewanella denitrificans OS217 4017119 YP_561536.1 CDS Sden_0521 NC_007954.1 590199 591605 D replicative DNA helicase 590199..591605 Shewanella denitrificans OS217 4017120 YP_561537.1 CDS alr NC_007954.1 591695 592786 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 591695..592786 Shewanella denitrificans OS217 4017121 YP_561538.1 CDS Sden_0523 NC_007954.1 592873 593340 R CheC-like protein complement(592873..593340) Shewanella denitrificans OS217 4016857 YP_561539.1 CDS Sden_0524 NC_007954.1 593682 594551 D MaoC-like dehydratase 593682..594551 Shewanella denitrificans OS217 4016858 YP_561540.1 CDS Sden_0525 NC_007954.1 594604 594969 D hypothetical protein 594604..594969 Shewanella denitrificans OS217 4016859 YP_561541.1 CDS Sden_0526 NC_007954.1 595050 595409 D hypothetical protein 595050..595409 Shewanella denitrificans OS217 4016860 YP_561542.1 CDS Sden_0527 NC_007954.1 595482 596720 D hypothetical protein 595482..596720 Shewanella denitrificans OS217 4016861 YP_561543.1 CDS Sden_0528 NC_007954.1 596704 597651 D periplasmic solute binding protein 596704..597651 Shewanella denitrificans OS217 4016862 YP_561544.1 CDS Sden_0529 NC_007954.1 597657 598448 D hypothetical protein 597657..598448 Shewanella denitrificans OS217 4016863 YP_561545.1 CDS Sden_0530 NC_007954.1 598540 599286 D 1-acyl-sn-glycerol-3-phosphate acyltransferases 598540..599286 Shewanella denitrificans OS217 4016864 YP_561546.1 CDS Sden_0531 NC_007954.1 599328 599717 D hypothetical protein 599328..599717 Shewanella denitrificans OS217 4016865 YP_561547.1 CDS Sden_0532 NC_007954.1 599795 600760 R GGDEF domain-containing protein complement(599795..600760) Shewanella denitrificans OS217 4016866 YP_561548.1 CDS Sden_0533 NC_007954.1 600781 601776 R response regulator receiver complement(600781..601776) Shewanella denitrificans OS217 4016867 YP_561549.1 CDS Sden_0534 NC_007954.1 602102 602908 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 602102..602908 Shewanella denitrificans OS217 4016868 YP_561550.1 CDS Sden_0535 NC_007954.1 602996 603874 R hypothetical protein complement(602996..603874) Shewanella denitrificans OS217 4016869 YP_561551.1 CDS Sden_0536 NC_007954.1 604053 606959 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(604053..606959) Shewanella denitrificans OS217 4016870 YP_561552.1 CDS Sden_0537 NC_007954.1 607374 608768 D PhoH-like protein 607374..608768 Shewanella denitrificans OS217 4016871 YP_561553.1 CDS Sden_0538 NC_007954.1 609025 612726 D ATP-binding region, ATPase-like protein 609025..612726 Shewanella denitrificans OS217 4016872 YP_561554.1 CDS Sden_0539 NC_007954.1 612728 614530 R protein kinase complement(612728..614530) Shewanella denitrificans OS217 4016873 YP_561555.1 CDS Sden_0540 NC_007954.1 614684 615046 D hypothetical protein 614684..615046 Shewanella denitrificans OS217 4016874 YP_561556.1 CDS Sden_0541 NC_007954.1 615146 615802 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 615146..615802 Shewanella denitrificans OS217 4016875 YP_561557.1 CDS Sden_0542 NC_007954.1 615955 616749 D UBA/THIF-type NAD/FAD binding fold 615955..616749 Shewanella denitrificans OS217 4016915 YP_561558.1 CDS Sden_0543 NC_007954.1 616756 618360 R ATP-binding region, ATPase-like protein complement(616756..618360) Shewanella denitrificans OS217 4016916 YP_561559.1 CDS Sden_0544 NC_007954.1 618556 619167 D hypothetical protein 618556..619167 Shewanella denitrificans OS217 4016917 YP_561560.1 CDS Sden_0545 NC_007954.1 620416 620739 D hypothetical protein 620416..620739 Shewanella denitrificans OS217 4016919 YP_561561.1 CDS Sden_0546 NC_007954.1 620749 621240 D orphan protein 620749..621240 Shewanella denitrificans OS217 4016920 YP_561562.1 CDS Sden_0547 NC_007954.1 621251 621499 D hypothetical protein 621251..621499 Shewanella denitrificans OS217 4016921 YP_561563.1 CDS Sden_0550 NC_007954.1 623221 623820 R regulatory protein, TetR complement(623221..623820) Shewanella denitrificans OS217 4016924 YP_561564.1 CDS Sden_0551 NC_007954.1 623922 624443 D HPP 623922..624443 Shewanella denitrificans OS217 4016925 YP_561565.1 CDS Sden_0552 NC_007954.1 624741 625679 D aminotransferase, class V 624741..625679 Shewanella denitrificans OS217 4016926 YP_561566.1 CDS Sden_0553 NC_007954.1 625836 628409 R Beta-N-acetylhexosaminidase complement(625836..628409) Shewanella denitrificans OS217 4016927 YP_561567.1 CDS Sden_0554 NC_007954.1 629035 629619 D hypothetical protein 629035..629619 Shewanella denitrificans OS217 4016928 YP_561568.1 CDS Sden_0555 NC_007954.1 629944 630804 D MltA-interacting MipA 629944..630804 Shewanella denitrificans OS217 4016929 YP_561569.1 CDS Sden_0556 NC_007954.1 630810 631238 D hypothetical protein 630810..631238 Shewanella denitrificans OS217 4016930 YP_561570.1 CDS Sden_0557 NC_007954.1 631241 631945 D response regulator receiver 631241..631945 Shewanella denitrificans OS217 4016931 YP_561571.1 CDS Sden_0558 NC_007954.1 631942 633237 D ATP-binding region, ATPase-like protein 631942..633237 Shewanella denitrificans OS217 4016932 YP_561572.1 CDS Sden_0559 NC_007954.1 633280 634278 R hypothetical protein complement(633280..634278) Shewanella denitrificans OS217 4016933 YP_561573.1 CDS Sden_0560 NC_007954.1 634384 634866 R hypothetical protein complement(634384..634866) Shewanella denitrificans OS217 4016533 YP_561574.1 CDS Sden_0561 NC_007954.1 634886 635659 R MltA-interacting MipA complement(634886..635659) Shewanella denitrificans OS217 4016534 YP_561575.1 CDS Sden_0562 NC_007954.1 635979 636500 D hypothetical protein 635979..636500 Shewanella denitrificans OS217 4016535 YP_561576.1 CDS Sden_0563 NC_007954.1 636736 638772 R transcriptional regulatory protein-like protein complement(636736..638772) Shewanella denitrificans OS217 4016536 YP_561577.1 CDS Sden_0564 NC_007954.1 639096 639947 D lipoprotein 639096..639947 Shewanella denitrificans OS217 4016537 YP_561578.1 CDS Sden_0565 NC_007954.1 640513 641118 D cell wall surface anchor family protein 640513..641118 Shewanella denitrificans OS217 4016538 YP_561579.1 CDS Sden_0566 NC_007954.1 641213 642133 D hypothetical protein 641213..642133 Shewanella denitrificans OS217 4016539 YP_561580.1 CDS Sden_0567 NC_007954.1 642130 643527 R peptidase S8/S53 subtilisin kexin sedolisin complement(642130..643527) Shewanella denitrificans OS217 4016540 YP_561581.1 CDS Sden_0568 NC_007954.1 643654 644142 D sigma-70, region 4 type 2 643654..644142 Shewanella denitrificans OS217 4016541 YP_561582.1 CDS Sden_0569 NC_007954.1 644139 644888 D hypothetical protein 644139..644888 Shewanella denitrificans OS217 4016542 YP_561583.1 CDS Sden_0570 NC_007954.1 645027 645425 D hypothetical protein 645027..645425 Shewanella denitrificans OS217 4016543 YP_561584.1 CDS Sden_0571 NC_007954.1 645531 646007 D hypothetical protein 645531..646007 Shewanella denitrificans OS217 4016544 YP_561585.1 CDS Sden_0572 NC_007954.1 646407 648740 D GGDEF domain-containing protein 646407..648740 Shewanella denitrificans OS217 4016545 YP_561586.1 CDS Sden_0573 NC_007954.1 649527 649808 D TonB-like protein 649527..649808 Shewanella denitrificans OS217 4016546 YP_561587.1 CDS Sden_0574 NC_007954.1 650014 650604 D hypothetical protein 650014..650604 Shewanella denitrificans OS217 4016547 YP_561588.1 CDS Sden_0575 NC_007954.1 650744 651985 D secretion protein HlyD 650744..651985 Shewanella denitrificans OS217 4016548 YP_561589.1 CDS Sden_0576 NC_007954.1 652017 655250 D heavy metal efflux pump CzcA 652017..655250 Shewanella denitrificans OS217 4016549 YP_561590.1 CDS Sden_0577 NC_007954.1 655483 655746 D hypothetical protein 655483..655746 Shewanella denitrificans OS217 4016550 YP_561591.1 CDS Sden_0578 NC_007954.1 655984 656364 D penicillinase repressor 655984..656364 Shewanella denitrificans OS217 4016551 YP_561592.1 CDS Sden_0579 NC_007954.1 656391 658016 D peptidase M56, BlaR1 656391..658016 Shewanella denitrificans OS217 4016609 YP_561593.1 CDS Sden_0580 NC_007954.1 658192 659604 D membrane bound O-acyl transferase, MBOAT 658192..659604 Shewanella denitrificans OS217 4016610 YP_561594.1 CDS Sden_0581 NC_007954.1 659579 660874 D hypothetical protein 659579..660874 Shewanella denitrificans OS217 4016611 YP_561595.1 CDS Sden_0582 NC_007954.1 661252 663381 R TonB-dependent receptor, plug complement(661252..663381) Shewanella denitrificans OS217 4016612 YP_561596.1 CDS Sden_0583 NC_007954.1 663507 663899 R ParB-like nuclease complement(663507..663899) Shewanella denitrificans OS217 4016613 YP_561597.1 CDS Sden_0584 NC_007954.1 663889 665106 R Orn/DAP/Arg decarboxylase 2 complement(663889..665106) Shewanella denitrificans OS217 4016614 YP_561598.1 CDS Sden_0585 NC_007954.1 665099 665878 R HpcH/HpaI aldolase complement(665099..665878) Shewanella denitrificans OS217 4016615 YP_561599.1 CDS Sden_0586 NC_007954.1 665875 669321 R IucA/IucC complement(665875..669321) Shewanella denitrificans OS217 4016616 YP_561600.1 CDS Sden_0587 NC_007954.1 669318 670496 R major facilitator transporter complement(669318..670496) Shewanella denitrificans OS217 4016617 YP_561601.1 CDS Sden_0588 NC_007954.1 670489 672183 R siderophore biosynthesis protein complement(670489..672183) Shewanella denitrificans OS217 4016618 YP_561602.1 CDS Sden_0589 NC_007954.1 672199 673212 R ornithine cyclodeaminase complement(672199..673212) Shewanella denitrificans OS217 4016619 YP_561603.1 CDS Sden_0590 NC_007954.1 673241 674251 R pyridoxal-5'-phosphate-dependent enzyme, beta subunit complement(673241..674251) Shewanella denitrificans OS217 4016620 YP_561604.1 CDS Sden_0591 NC_007954.1 674594 675133 R hypothetical protein complement(674594..675133) Shewanella denitrificans OS217 4016621 YP_561605.1 CDS Sden_0592 NC_007954.1 676167 677183 R transposase IS116/IS110/IS902 complement(676167..677183) Shewanella denitrificans OS217 4016622 YP_561606.1 CDS Sden_0593 NC_007954.1 677345 677656 D glycine betaine/choline/proline transport system permease protein 677345..677656 Shewanella denitrificans OS217 4016623 YP_561607.1 CDS Sden_0594 NC_007954.1 677653 678504 D integrase catalytic subunit 677653..678504 Shewanella denitrificans OS217 4016624 YP_561608.1 CDS Sden_0595 NC_007954.1 679734 680108 R hypothetical protein complement(679734..680108) Shewanella denitrificans OS217 4016625 YP_561609.1 CDS Sden_0596 NC_007954.1 680712 681218 D hypothetical protein 680712..681218 Shewanella denitrificans OS217 4016626 YP_561610.1 CDS Sden_0597 NC_007954.1 681222 682103 D hypothetical protein 681222..682103 Shewanella denitrificans OS217 4016627 YP_561611.1 CDS Sden_0598 NC_007954.1 682614 683738 D transposase, IS4 682614..683738 Shewanella denitrificans OS217 4016628 YP_561612.1 CDS Sden_0599 NC_007954.1 683738 684001 D hypothetical protein 683738..684001 Shewanella denitrificans OS217 4017013 YP_561613.1 CDS Sden_0600 NC_007954.1 685061 687187 R hypothetical protein complement(685061..687187) Shewanella denitrificans OS217 4017014 YP_561614.1 CDS Sden_0601 NC_007954.1 687553 688941 D ATP-binding region, ATPase-like protein 687553..688941 Shewanella denitrificans OS217 4017015 YP_561615.1 CDS Sden_0602 NC_007954.1 688938 689489 D response regulator receiver 688938..689489 Shewanella denitrificans OS217 4017016 YP_561616.1 CDS Sden_0603 NC_007954.1 689545 690504 D lipase, class 3 689545..690504 Shewanella denitrificans OS217 4017017 YP_561617.1 CDS Sden_0604 NC_007954.1 690603 691763 R hypothetical protein complement(690603..691763) Shewanella denitrificans OS217 4017018 YP_561618.1 CDS Sden_0605 NC_007954.1 692028 692264 D diguanylate cyclase 692028..692264 Shewanella denitrificans OS217 4017019 YP_561619.1 CDS Sden_0606 NC_007954.1 692383 692793 R hypothetical protein complement(692383..692793) Shewanella denitrificans OS217 4017020 YP_561620.1 CDS Sden_0607 NC_007954.1 692803 693879 R hypothetical protein complement(692803..693879) Shewanella denitrificans OS217 4017021 YP_561621.1 CDS Sden_0608 NC_007954.1 694114 694452 D hypothetical protein 694114..694452 Shewanella denitrificans OS217 4017022 YP_561622.1 CDS Sden_0609 NC_007954.1 694523 696655 R TonB-dependent siderophore receptor complement(694523..696655) Shewanella denitrificans OS217 4017023 YP_561623.1 CDS Sden_0610 NC_007954.1 696913 697692 R helix-turn-helix, AraC type complement(696913..697692) Shewanella denitrificans OS217 4017024 YP_561624.1 CDS Sden_0611 NC_007954.1 697796 698680 D hypothetical protein 697796..698680 Shewanella denitrificans OS217 4017025 YP_561625.1 CDS Sden_0612 NC_007954.1 698843 699496 D hypothetical protein 698843..699496 Shewanella denitrificans OS217 4017026 YP_561626.1 CDS Sden_0613 NC_007954.1 699529 700263 R hypothetical protein complement(699529..700263) Shewanella denitrificans OS217 4017027 YP_561627.1 CDS Sden_0614 NC_007954.1 700363 700677 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(700363..700677) Shewanella denitrificans OS217 4017028 YP_561628.1 CDS Sden_0615 NC_007954.1 700878 702050 D O-succinylhomoserine (thiol)-lyase 700878..702050 Shewanella denitrificans OS217 4017029 YP_561629.1 CDS metL NC_007954.1 702061 704502 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 702061..704502 Shewanella denitrificans OS217 4017030 YP_561630.1 CDS Sden_0617 NC_007954.1 704831 706318 D amino acid carrier protein 704831..706318 Shewanella denitrificans OS217 4017031 YP_561631.1 CDS Sden_0618 NC_007954.1 707148 708791 R PepSY-associated TM helix complement(707148..708791) Shewanella denitrificans OS217 4016993 YP_561632.1 CDS Sden_0619 NC_007954.1 708788 709087 R hypothetical protein complement(708788..709087) Shewanella denitrificans OS217 4016994 YP_561633.1 CDS Sden_0620 NC_007954.1 709084 709347 R hypothetical protein complement(709084..709347) Shewanella denitrificans OS217 4016995 YP_561634.1 CDS Sden_0621 NC_007954.1 709491 711551 D TonB-dependent receptor 709491..711551 Shewanella denitrificans OS217 4016996 YP_561635.1 CDS Sden_0622 NC_007954.1 711869 712744 R DAHP synthetase I/KDSA complement(711869..712744) Shewanella denitrificans OS217 4016997 YP_561636.1 CDS Sden_0623 NC_007954.1 712820 714133 R hypothetical protein complement(712820..714133) Shewanella denitrificans OS217 4016998 YP_561637.1 CDS Sden_0624 NC_007954.1 714139 715566 R major facilitator transporter complement(714139..715566) Shewanella denitrificans OS217 4016999 YP_561638.1 CDS Sden_0625 NC_007954.1 715616 716236 R glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase complement(715616..716236) Shewanella denitrificans OS217 4017000 YP_561639.1 CDS Sden_0626 NC_007954.1 716241 717641 R anthranilate synthase component I/chorismate-binding protein complement(716241..717641) Shewanella denitrificans OS217 4017001 YP_561640.1 CDS Sden_0627 NC_007954.1 717641 718987 R coenzyme F390 synthetase complement(717641..718987) Shewanella denitrificans OS217 4017002 YP_561641.1 CDS Sden_0628 NC_007954.1 718975 724488 R amino acid adenylation complement(718975..724488) Shewanella denitrificans OS217 4017003 YP_561642.1 CDS Sden_0629 NC_007954.1 724527 725630 R hypothetical protein complement(724527..725630) Shewanella denitrificans OS217 4017004 YP_561643.1 CDS Sden_0630 NC_007954.1 725717 726418 R NADPH-dependent FMN reductase complement(725717..726418) Shewanella denitrificans OS217 4017005 YP_561644.1 CDS Sden_0631 NC_007954.1 726587 727942 R glycine hydroxymethyltransferase complement(726587..727942) Shewanella denitrificans OS217 4017006 YP_561645.1 CDS Sden_0632 NC_007954.1 727955 728935 R phosphopantetheine-binding complement(727955..728935) Shewanella denitrificans OS217 4017007 YP_561646.1 CDS Sden_0633 NC_007954.1 728958 730067 R hypothetical protein complement(728958..730067) Shewanella denitrificans OS217 4017008 YP_561647.1 CDS Sden_0634 NC_007954.1 731116 731841 D 4'-phosphopantetheinyl transferase 731116..731841 Shewanella denitrificans OS217 4017009 YP_561648.1 CDS Sden_0635 NC_007954.1 731996 732865 D YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase YghU 731996..732865 Shewanella denitrificans OS217 4017010 YP_561649.1 CDS Sden_0636 NC_007954.1 734654 737494 D lipoprotein 734654..737494 Shewanella denitrificans OS217 4017011 YP_561650.1 CDS Sden_0637 NC_007954.1 737587 740337 D TonB-dependent receptor 737587..740337 Shewanella denitrificans OS217 4017012 YP_561651.1 CDS Sden_0638 NC_007954.1 740960 742141 D phosphate-selective porin O and P 740960..742141 Shewanella denitrificans OS217 4016667 YP_561652.1 CDS Sden_0639 NC_007954.1 742281 742811 D FMN-binding 742281..742811 Shewanella denitrificans OS217 4016668 YP_561653.1 CDS Sden_0640 NC_007954.1 742872 743681 D PepSY-associated TM helix 742872..743681 Shewanella denitrificans OS217 4016669 YP_561654.1 CDS Sden_0641 NC_007954.1 743682 743987 R GCN5-related N-acetyltransferase complement(743682..743987) Shewanella denitrificans OS217 4016670 YP_561655.1 CDS metF NC_007954.1 744631 745527 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 744631..745527 Shewanella denitrificans OS217 4016671 YP_561656.1 CDS Sden_0643 NC_007954.1 745952 746428 D hypothetical protein 745952..746428 Shewanella denitrificans OS217 4016672 YP_561657.1 CDS Sden_0644 NC_007954.1 746621 746980 D GCN5-related N-acetyltransferase 746621..746980 Shewanella denitrificans OS217 4016673 YP_561658.1 CDS Sden_0645 NC_007954.1 747106 747357 D hypothetical protein 747106..747357 Shewanella denitrificans OS217 4016674 YP_561659.1 CDS Sden_0646 NC_007954.1 747436 748308 R hypothetical protein complement(747436..748308) Shewanella denitrificans OS217 4016675 YP_561660.1 CDS Sden_0647 NC_007954.1 748404 748817 R endoribonuclease L-PSP complement(748404..748817) Shewanella denitrificans OS217 4016676 YP_561661.1 CDS Sden_0648 NC_007954.1 749101 749730 D hypothetical protein 749101..749730 Shewanella denitrificans OS217 4016677 YP_561662.1 CDS Sden_0649 NC_007954.1 749784 751154 D amino acid carrier protein 749784..751154 Shewanella denitrificans OS217 4016678 YP_561663.1 CDS Sden_0650 NC_007954.1 751264 752619 R hypothetical protein complement(751264..752619) Shewanella denitrificans OS217 4016679 YP_561664.1 CDS Sden_0651 NC_007954.1 752917 753906 D hypothetical protein 752917..753906 Shewanella denitrificans OS217 4016680 YP_561665.1 CDS Sden_0652 NC_007954.1 753967 754737 R hypothetical protein complement(753967..754737) Shewanella denitrificans OS217 4016681 YP_561666.1 CDS Sden_0653 NC_007954.1 754737 755672 R ABC transporter related complement(754737..755672) Shewanella denitrificans OS217 4016682 YP_561667.1 CDS Sden_0654 NC_007954.1 755758 756288 R hypoxanthine phosphoribosyltransferase complement(755758..756288) Shewanella denitrificans OS217 4016683 YP_561668.1 CDS Sden_0655 NC_007954.1 756312 756968 R aromatic acid decarboxylase complement(756312..756968) Shewanella denitrificans OS217 4016684 YP_561669.1 CDS Sden_0656 NC_007954.1 757000 758394 R UDP-N-acetylmuramate complement(757000..758394) Shewanella denitrificans OS217 4016685 YP_561670.1 CDS Sden_0657 NC_007954.1 758598 758774 R hypothetical protein complement(758598..758774) Shewanella denitrificans OS217 4016934 YP_561671.1 CDS Sden_0658 NC_007954.1 759236 759508 R histone-like DNA-binding protein complement(759236..759508) Shewanella denitrificans OS217 4016935 YP_561672.1 CDS Sden_0659 NC_007954.1 759644 760441 R response regulator receiver complement(759644..760441) Shewanella denitrificans OS217 4016936 YP_561673.1 CDS Sden_0660 NC_007954.1 760550 760972 R hypothetical protein complement(760550..760972) Shewanella denitrificans OS217 4016937 YP_561674.1 CDS Sden_0661 NC_007954.1 761107 761616 D hypothetical protein 761107..761616 Shewanella denitrificans OS217 4016938 YP_561675.1 CDS Sden_0662 NC_007954.1 761727 762260 D hypothetical protein 761727..762260 Shewanella denitrificans OS217 4016939 YP_561676.1 CDS Sden_0663 NC_007954.1 762504 763526 R response regulator receiver complement(762504..763526) Shewanella denitrificans OS217 4016940 YP_561677.1 CDS Sden_0664 NC_007954.1 763542 766103 R ATP-binding region, ATPase-like protein complement(763542..766103) Shewanella denitrificans OS217 4016941 YP_561678.1 CDS Sden_0665 NC_007954.1 766107 766610 R hypothetical protein complement(766107..766610) Shewanella denitrificans OS217 4016942 YP_561679.1 CDS Sden_0666 NC_007954.1 766612 768459 R TonB-dependent receptor, plug complement(766612..768459) Shewanella denitrificans OS217 4016943 YP_561680.1 CDS Sden_0667 NC_007954.1 768846 769481 R hypothetical protein complement(768846..769481) Shewanella denitrificans OS217 4016944 YP_561681.1 CDS Sden_0668 NC_007954.1 769485 770477 R hypothetical protein complement(769485..770477) Shewanella denitrificans OS217 4016945 YP_561682.1 CDS Sden_0669 NC_007954.1 770474 771238 R ABC transporter related complement(770474..771238) Shewanella denitrificans OS217 4016946 YP_561683.1 CDS Sden_0670 NC_007954.1 771241 772350 R hypothetical protein complement(771241..772350) Shewanella denitrificans OS217 4016947 YP_561684.1 CDS Sden_0671 NC_007954.1 772614 772925 R hypothetical protein complement(772614..772925) Shewanella denitrificans OS217 4016948 YP_561685.1 CDS Sden_0672 NC_007954.1 772981 773955 D GumN 772981..773955 Shewanella denitrificans OS217 4016949 YP_561686.1 CDS Sden_0673 NC_007954.1 774001 774492 D hypothetical protein 774001..774492 Shewanella denitrificans OS217 4016950 YP_561687.1 CDS Sden_0674 NC_007954.1 774657 775511 D hypothetical protein 774657..775511 Shewanella denitrificans OS217 4016951 YP_561688.1 CDS Sden_0675 NC_007954.1 775606 776739 R beta-lactamase complement(775606..776739) Shewanella denitrificans OS217 4016952 YP_561689.1 CDS Sden_0676 NC_007954.1 776856 778304 R peptidase M23B complement(776856..778304) Shewanella denitrificans OS217 4016953 YP_561690.1 CDS Sden_0677 NC_007954.1 778307 778708 R penicillinase repressor complement(778307..778708) Shewanella denitrificans OS217 4016759 YP_561691.1 CDS Sden_0678 NC_007954.1 779367 780506 D acyltransferase 3 779367..780506 Shewanella denitrificans OS217 4016760 YP_561692.1 CDS Sden_0679 NC_007954.1 780701 781279 D hypothetical protein 780701..781279 Shewanella denitrificans OS217 4016761 YP_561693.1 CDS Sden_0680 NC_007954.1 781345 781713 D hypothetical protein 781345..781713 Shewanella denitrificans OS217 4016762 YP_561694.1 CDS Sden_0681 NC_007954.1 783176 783925 D KilA-like protein 783176..783925 Shewanella denitrificans OS217 4016763 YP_561695.1 CDS Sden_0682 NC_007954.1 784105 784659 R hypothetical protein complement(784105..784659) Shewanella denitrificans OS217 4016764 YP_561696.1 CDS Sden_0683 NC_007954.1 785063 786262 D aromatic amino acid permease 785063..786262 Shewanella denitrificans OS217 4016766 YP_561697.1 CDS Sden_0684 NC_007954.1 786458 788614 D hypothetical protein 786458..788614 Shewanella denitrificans OS217 4016767 YP_561698.1 CDS Sden_0685 NC_007954.1 788644 789360 R pseudouridine synthase, Rsu complement(788644..789360) Shewanella denitrificans OS217 4016768 YP_561699.1 CDS Sden_0686 NC_007954.1 789567 791765 R hypothetical protein complement(789567..791765) Shewanella denitrificans OS217 4016769 YP_561700.1 CDS Sden_0687 NC_007954.1 791976 793325 R Na+/H+ antiporter NhaC complement(791976..793325) Shewanella denitrificans OS217 4016770 YP_561701.1 CDS Sden_0688 NC_007954.1 793524 795305 R pseudouridine synthase complement(793524..795305) Shewanella denitrificans OS217 4016771 YP_561702.1 CDS Sden_0689 NC_007954.1 795353 798547 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(795353..798547) Shewanella denitrificans OS217 4016772 YP_561703.1 CDS Sden_0690 NC_007954.1 798861 799442 R SH3, type 3 complement(798861..799442) Shewanella denitrificans OS217 4016773 YP_561704.1 CDS Sden_0691 NC_007954.1 799566 800834 R phosphate transporter complement(799566..800834) Shewanella denitrificans OS217 4016774 YP_561705.1 CDS Sden_0692 NC_007954.1 800859 801539 R hypothetical protein complement(800859..801539) Shewanella denitrificans OS217 4016775 YP_561706.1 CDS Sden_0693 NC_007954.1 801762 802727 D adenylate cyclase 801762..802727 Shewanella denitrificans OS217 4016776 YP_561707.1 CDS Sden_0694 NC_007954.1 802762 803592 R Ion transport 2 complement(802762..803592) Shewanella denitrificans OS217 4016895 YP_561708.1 CDS Sden_0695 NC_007954.1 803739 804065 R hypothetical protein complement(803739..804065) Shewanella denitrificans OS217 4016896 YP_561709.1 CDS Sden_0696 NC_007954.1 804095 804739 R hypothetical protein complement(804095..804739) Shewanella denitrificans OS217 4016897 YP_561710.1 CDS Sden_0697 NC_007954.1 804746 805435 R PspA/IM30 complement(804746..805435) Shewanella denitrificans OS217 4016898 YP_561711.1 CDS Sden_0698 NC_007954.1 805447 805860 R hypothetical protein complement(805447..805860) Shewanella denitrificans OS217 4016899 YP_561712.1 CDS Sden_0699 NC_007954.1 805961 807661 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(805961..807661) Shewanella denitrificans OS217 4016900 YP_561713.1 CDS Sden_0700 NC_007954.1 807670 808572 R hypothetical protein complement(807670..808572) Shewanella denitrificans OS217 4016901 YP_561714.1 CDS Sden_0701 NC_007954.1 808579 809538 R hypothetical protein complement(808579..809538) Shewanella denitrificans OS217 4016902 YP_561715.1 CDS Sden_0702 NC_007954.1 809695 812562 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 809695..812562 Shewanella denitrificans OS217 4016903 YP_561716.1 CDS Sden_0703 NC_007954.1 812651 813601 R hypothetical protein complement(812651..813601) Shewanella denitrificans OS217 4016904 YP_561717.1 CDS Sden_0704 NC_007954.1 813673 814446 R amino acid-binding protein complement(813673..814446) Shewanella denitrificans OS217 4016905 YP_561718.1 CDS Sden_0705 NC_007954.1 814600 814959 R hypothetical protein complement(814600..814959) Shewanella denitrificans OS217 4016906 YP_561719.1 CDS Sden_0706 NC_007954.1 815187 815702 D hypothetical protein 815187..815702 Shewanella denitrificans OS217 4016907 YP_561720.1 CDS Sden_0707 NC_007954.1 815833 816747 R ErfK/YbiS/YcfS/YnhG complement(815833..816747) Shewanella denitrificans OS217 4016908 YP_561721.1 CDS Sden_0708 NC_007954.1 816931 817863 R Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(816931..817863) Shewanella denitrificans OS217 4016909 YP_561722.1 CDS Sden_0709 NC_007954.1 817946 819388 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 817946..819388 Shewanella denitrificans OS217 4016910 YP_561723.1 CDS Sden_0710 NC_007954.1 819399 820385 D hypothetical protein 819399..820385 Shewanella denitrificans OS217 4016911 YP_561724.1 CDS Sden_0711 NC_007954.1 820440 821786 R esterase complement(820440..821786) Shewanella denitrificans OS217 4016912 YP_561725.1 CDS Sden_0712 NC_007954.1 821895 823520 R chemotaxis sensory transducer complement(821895..823520) Shewanella denitrificans OS217 4016913 YP_561726.1 CDS Sden_0713 NC_007954.1 824165 824770 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 824165..824770 Shewanella denitrificans OS217 4016914 YP_561727.1 CDS Sden_0714 NC_007954.1 824761 826224 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 824761..826224 Shewanella denitrificans OS217 4016629 YP_561728.1 CDS Sden_0715 NC_007954.1 826239 827957 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 826239..827957 Shewanella denitrificans OS217 4016630 YP_561729.1 CDS Sden_0716 NC_007954.1 828209 829417 D transporter, BCCT family protein 828209..829417 Shewanella denitrificans OS217 4016631 YP_561730.1 CDS Sden_0717 NC_007954.1 829567 830370 D hypothetical protein 829567..830370 Shewanella denitrificans OS217 4016632 YP_561731.1 CDS Sden_0718 NC_007954.1 830510 830992 D regulatory protein, MarR 830510..830992 Shewanella denitrificans OS217 4016633 YP_561732.1 CDS Sden_0719 NC_007954.1 831047 831898 R hypothetical protein complement(831047..831898) Shewanella denitrificans OS217 4016634 YP_561733.1 CDS Sden_0720 NC_007954.1 831921 833096 R major facilitator transporter complement(831921..833096) Shewanella denitrificans OS217 4016635 YP_561734.1 CDS Sden_0721 NC_007954.1 833273 834748 D hypothetical protein 833273..834748 Shewanella denitrificans OS217 4016636 YP_561735.1 CDS Sden_0722 NC_007954.1 834805 835968 D lipoprotein 834805..835968 Shewanella denitrificans OS217 4016637 YP_561736.1 CDS Sden_0723 NC_007954.1 836089 837735 D hypothetical protein 836089..837735 Shewanella denitrificans OS217 4016638 YP_561737.1 CDS Sden_0724 NC_007954.1 837848 838492 R heat shock protein DnaJ-like protein complement(837848..838492) Shewanella denitrificans OS217 4016639 YP_561738.1 CDS Sden_0725 NC_007954.1 838666 839232 D hypoxanthine-guanine phosphoribosyltransferase 838666..839232 Shewanella denitrificans OS217 4016640 YP_561739.1 CDS Sden_0726 NC_007954.1 839341 841344 D peptidase U32 839341..841344 Shewanella denitrificans OS217 4016641 YP_561740.1 CDS Sden_0727 NC_007954.1 841461 841784 D hypothetical protein 841461..841784 Shewanella denitrificans OS217 4016642 YP_561741.1 CDS Sden_0728 NC_007954.1 841994 842698 D hypothetical protein 841994..842698 Shewanella denitrificans OS217 4016643 YP_561742.1 CDS Sden_0729 NC_007954.1 843047 845017 D TonB-dependent receptor, plug 843047..845017 Shewanella denitrificans OS217 4016645 YP_561743.1 CDS Sden_0730 NC_007954.1 845179 845925 D hypothetical protein 845179..845925 Shewanella denitrificans OS217 4016646 YP_561744.1 CDS Sden_0731 NC_007954.1 845996 846886 R LysR, substrate-binding complement(845996..846886) Shewanella denitrificans OS217 4016837 YP_561745.1 CDS Sden_0732 NC_007954.1 847044 849362 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 847044..849362 Shewanella denitrificans OS217 4016838 YP_561746.1 CDS Sden_0733 NC_007954.1 849397 850644 R 4Fe-4S cluster binding complement(849397..850644) Shewanella denitrificans OS217 4016839 YP_561747.1 CDS Sden_0734 NC_007954.1 850675 852489 R GGDEF domain-containing protein complement(850675..852489) Shewanella denitrificans OS217 4016840 YP_561748.1 CDS Sden_0735 NC_007954.1 852813 853247 D hypothetical protein 852813..853247 Shewanella denitrificans OS217 4016841 YP_561749.1 CDS Sden_0736 NC_007954.1 853327 855015 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(853327..855015) Shewanella denitrificans OS217 4016842 YP_561750.1 CDS Sden_0737 NC_007954.1 855249 855713 R hypothetical protein complement(855249..855713) Shewanella denitrificans OS217 4016843 YP_561751.1 CDS Sden_0738 NC_007954.1 856063 858606 D TonB-dependent receptor 856063..858606 Shewanella denitrificans OS217 4016844 YP_561752.1 CDS Sden_0739 NC_007954.1 858689 859333 D glutathione S-transferase-like protein 858689..859333 Shewanella denitrificans OS217 4016845 YP_561753.1 CDS Sden_0740 NC_007954.1 859449 859949 R hypothetical protein complement(859449..859949) Shewanella denitrificans OS217 4016846 YP_561754.1 CDS Sden_0741 NC_007954.1 860030 860431 R hypothetical protein complement(860030..860431) Shewanella denitrificans OS217 4016847 YP_561755.1 CDS Sden_0742 NC_007954.1 860607 861998 D hypothetical protein 860607..861998 Shewanella denitrificans OS217 4016848 YP_561756.1 CDS Sden_0743 NC_007954.1 862038 864329 R hypothetical protein complement(862038..864329) Shewanella denitrificans OS217 4016849 YP_561757.1 CDS Sden_0744 NC_007954.1 864540 865775 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(864540..865775) Shewanella denitrificans OS217 4016850 YP_561758.1 CDS Sden_0745 NC_007954.1 865986 866783 R O-methyltransferase complement(865986..866783) Shewanella denitrificans OS217 4016851 YP_561759.1 CDS Sden_0746 NC_007954.1 867278 868606 D branched-chain amino acid transport system II carrier protein 867278..868606 Shewanella denitrificans OS217 4016852 YP_561760.1 CDS Sden_0747 NC_007954.1 868759 869670 D tyrosine recombinase XerD 868759..869670 Shewanella denitrificans OS217 4016853 YP_561761.1 CDS Sden_0748 NC_007954.1 869865 870593 D thiol:disulfide interchange protein DsbC 869865..870593 Shewanella denitrificans OS217 4016854 YP_561762.1 CDS Sden_0749 NC_007954.1 870674 872398 D single-stranded-DNA-specific exonuclease RecJ 870674..872398 Shewanella denitrificans OS217 4016855 YP_561763.1 CDS Sden_0750 NC_007954.1 872434 873612 R hypothetical protein complement(872434..873612) Shewanella denitrificans OS217 4016856 YP_561764.1 CDS Sden_0751 NC_007954.1 873795 874970 R twin-arginine translocation pathway signal complement(873795..874970) Shewanella denitrificans OS217 4016590 YP_561765.1 CDS Sden_0752 NC_007954.1 874988 875431 R Fe-S metabolism associated SufE complement(874988..875431) Shewanella denitrificans OS217 4016591 YP_561766.1 CDS Sden_0753 NC_007954.1 875511 876773 R SufS subfamily cysteine desulfurase complement(875511..876773) Shewanella denitrificans OS217 4016592 YP_561767.1 CDS Sden_0754 NC_007954.1 876866 877906 R aldo/keto reductase complement(876866..877906) Shewanella denitrificans OS217 4016593 YP_561768.1 CDS Sden_0755 NC_007954.1 878010 878522 R GCN5-related N-acetyltransferase complement(878010..878522) Shewanella denitrificans OS217 4016594 YP_561769.1 CDS Sden_0756 NC_007954.1 878509 879051 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(878509..879051) Shewanella denitrificans OS217 4016595 YP_561770.1 CDS Sden_0757 NC_007954.1 879471 880244 D lipoprotein 879471..880244 Shewanella denitrificans OS217 4016596 YP_561771.1 CDS Sden_0758 NC_007954.1 880428 881219 D ribonuclease H 880428..881219 Shewanella denitrificans OS217 4016597 YP_561772.1 CDS Sden_0759 NC_007954.1 881281 881925 R HAD family hydrolase complement(881281..881925) Shewanella denitrificans OS217 4016598 YP_561773.1 CDS Sden_0760 NC_007954.1 882100 883239 D endonuclease/exonuclease/phosphatase 882100..883239 Shewanella denitrificans OS217 4016599 YP_561774.1 CDS Sden_0761 NC_007954.1 883374 883829 R hypothetical protein complement(883374..883829) Shewanella denitrificans OS217 4016600 YP_561775.1 CDS Sden_0762 NC_007954.1 883929 884138 R 4-oxalocrotonate tautomerase complement(883929..884138) Shewanella denitrificans OS217 4016601 YP_561776.1 CDS Sden_0763 NC_007954.1 884181 884564 R hypothetical protein complement(884181..884564) Shewanella denitrificans OS217 4016602 YP_561777.1 CDS Sden_0764 NC_007954.1 884615 885211 R glutathione S-transferase-like protein complement(884615..885211) Shewanella denitrificans OS217 4016603 YP_561778.1 CDS Sden_0765 NC_007954.1 885436 886335 D LysR, substrate-binding 885436..886335 Shewanella denitrificans OS217 4016604 YP_561779.1 CDS Sden_0766 NC_007954.1 886348 888282 R ammonium transporter complement(886348..888282) Shewanella denitrificans OS217 4016605 YP_561780.1 CDS Sden_0767 NC_007954.1 888431 888826 D transporter 888431..888826 Shewanella denitrificans OS217 4016606 YP_561781.1 CDS Sden_0768 NC_007954.1 888839 889813 R 2-dehydropantoate 2-reductase complement(888839..889813) Shewanella denitrificans OS217 4016607 YP_561782.1 CDS Sden_0769 NC_007954.1 889816 890196 R hypothetical protein complement(889816..890196) Shewanella denitrificans OS217 4016608 YP_561783.1 CDS Sden_0770 NC_007954.1 890367 890852 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 890367..890852 Shewanella denitrificans OS217 4016720 YP_561784.1 CDS Sden_0771 NC_007954.1 890969 892366 R major facilitator transporter complement(890969..892366) Shewanella denitrificans OS217 4016721 YP_561785.1 CDS Sden_0772 NC_007954.1 892552 892911 R hypothetical protein complement(892552..892911) Shewanella denitrificans OS217 4016722 YP_561786.1 CDS Sden_0773 NC_007954.1 893447 894031 R peptidyl-prolyl cis-trans isomerase, cyclophilin type complement(893447..894031) Shewanella denitrificans OS217 4016723 YP_561787.1 CDS Sden_0774 NC_007954.1 894048 894683 R lipoprotein complement(894048..894683) Shewanella denitrificans OS217 4016724 YP_561788.1 CDS Sden_0775 NC_007954.1 894891 895916 D hypothetical protein 894891..895916 Shewanella denitrificans OS217 4016725 YP_561789.1 CDS Sden_0776 NC_007954.1 896017 896961 D sterol desaturase family protein 896017..896961 Shewanella denitrificans OS217 4016726 YP_561790.1 CDS Sden_0777 NC_007954.1 897439 897954 D hypothetical protein 897439..897954 Shewanella denitrificans OS217 4016727 YP_561791.1 CDS Sden_0778 NC_007954.1 898181 898723 D hypothetical protein 898181..898723 Shewanella denitrificans OS217 4016728 YP_561792.1 CDS Sden_0779 NC_007954.1 898804 899229 D GCN5-related N-acetyltransferase 898804..899229 Shewanella denitrificans OS217 4016729 YP_561793.1 CDS Sden_0780 NC_007954.1 899409 900071 D hypothetical protein 899409..900071 Shewanella denitrificans OS217 4016730 YP_561794.1 CDS Sden_0781 NC_007954.1 900105 900923 R extradiol ring-cleavage dioxygenase III subunit B complement(900105..900923) Shewanella denitrificans OS217 4016731 YP_561795.1 CDS Sden_0782 NC_007954.1 901036 901485 R DoxX complement(901036..901485) Shewanella denitrificans OS217 4016732 YP_561796.1 CDS Sden_0783 NC_007954.1 901648 902559 D LysR, substrate-binding 901648..902559 Shewanella denitrificans OS217 4016733 YP_561797.1 CDS hmuV NC_007954.1 902581 903345 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(902581..903345) Shewanella denitrificans OS217 4016734 YP_561798.1 CDS Sden_0785 NC_007954.1 903353 904375 R transport system permease protein complement(903353..904375) Shewanella denitrificans OS217 4016735 YP_561799.1 CDS Sden_0786 NC_007954.1 904380 905363 R periplasmic binding protein complement(904380..905363) Shewanella denitrificans OS217 4016736 YP_561800.1 CDS Sden_0787 NC_007954.1 905365 905784 R biopolymer transport protein ExbD/TolR complement(905365..905784) Shewanella denitrificans OS217 4016737 YP_561801.1 CDS Sden_0788 NC_007954.1 905781 906575 R MotA/TolQ/ExbB proton channel complement(905781..906575) Shewanella denitrificans OS217 4016738 YP_561802.1 CDS Sden_0789 NC_007954.1 906603 907412 R TonB-like protein complement(906603..907412) Shewanella denitrificans OS217 4016739 YP_561803.1 CDS Sden_0790 NC_007954.1 907591 909663 D TonB-dependent haem/haemoglobin receptor 907591..909663 Shewanella denitrificans OS217 4016954 YP_561804.1 CDS Sden_0791 NC_007954.1 909741 910295 D hypothetical protein 909741..910295 Shewanella denitrificans OS217 4016955 YP_561805.1 CDS Sden_0792 NC_007954.1 910348 910878 D pyridoxamine 5'-phosphate oxidase-related, FMN-binding 910348..910878 Shewanella denitrificans OS217 4016956 YP_561806.1 CDS Sden_0793 NC_007954.1 911152 911853 D pseudouridine synthase, Rsu 911152..911853 Shewanella denitrificans OS217 4016957 YP_561807.1 CDS Sden_0794 NC_007954.1 911938 912588 R nicotinate-nucleotide adenylyltransferase complement(911938..912588) Shewanella denitrificans OS217 4016958 YP_561808.1 CDS Sden_0795 NC_007954.1 912592 913623 R DNA polymerase III, delta subunit complement(912592..913623) Shewanella denitrificans OS217 4016959 YP_561809.1 CDS Sden_0796 NC_007954.1 913660 914157 R rare lipoprotein B complement(913660..914157) Shewanella denitrificans OS217 4016960 YP_561810.1 CDS leuS NC_007954.1 914322 916940 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(914322..916940) Shewanella denitrificans OS217 4016961 YP_561811.1 CDS Sden_0798 NC_007954.1 917068 917568 D hypothetical protein 917068..917568 Shewanella denitrificans OS217 4016962 YP_561812.1 CDS Sden_0799 NC_007954.1 917660 919141 R ATP-binding region, ATPase-like protein complement(917660..919141) Shewanella denitrificans OS217 4016963 YP_561813.1 CDS Sden_0800 NC_007954.1 919175 919849 R response regulator receiver complement(919175..919849) Shewanella denitrificans OS217 4016964 YP_561814.1 CDS Sden_0801 NC_007954.1 919885 920259 R diacylglycerol kinase complement(919885..920259) Shewanella denitrificans OS217 4016965 YP_561815.1 CDS Sden_0802 NC_007954.1 920375 921970 R sulfatase complement(920375..921970) Shewanella denitrificans OS217 4016966 YP_561816.1 CDS Sden_0803 NC_007954.1 922485 923528 D hypothetical protein 922485..923528 Shewanella denitrificans OS217 4016967 YP_561817.1 CDS Sden_0804 NC_007954.1 923752 925041 D peptidase A1, pepsin 923752..925041 Shewanella denitrificans OS217 4016968 YP_561818.1 CDS Sden_0805 NC_007954.1 925038 925553 D GCN5-related N-acetyltransferase 925038..925553 Shewanella denitrificans OS217 4016969 YP_561819.1 CDS Sden_0806 NC_007954.1 925606 926466 D uroporphyrin-III C/tetrapyrrole methyltransferase 925606..926466 Shewanella denitrificans OS217 4016970 YP_561820.1 CDS Sden_0807 NC_007954.1 926463 926723 D hypothetical protein 926463..926723 Shewanella denitrificans OS217 4016971 YP_561821.1 CDS Sden_0809 NC_007954.1 927366 929123 D GGDEF domain-containing protein 927366..929123 Shewanella denitrificans OS217 4017032 YP_561822.1 CDS Sden_0810 NC_007954.1 929329 929487 R hypothetical protein complement(929329..929487) Shewanella denitrificans OS217 4017033 YP_561823.1 CDS lnt NC_007954.1 929675 931300 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(929675..931300) Shewanella denitrificans OS217 4017034 YP_561824.1 CDS Sden_0812 NC_007954.1 931304 932182 R CBS:transporter associated complement(931304..932182) Shewanella denitrificans OS217 4017035 YP_561825.1 CDS Sden_0813 NC_007954.1 932229 932690 R metalloprotease complement(932229..932690) Shewanella denitrificans OS217 4017036 YP_561826.1 CDS Sden_0814 NC_007954.1 932680 933777 R PhoH-like protein complement(932680..933777) Shewanella denitrificans OS217 4017037 YP_561827.1 CDS Sden_0815 NC_007954.1 933919 935343 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(933919..935343) Shewanella denitrificans OS217 4017038 YP_561828.1 CDS Sden_0816 NC_007954.1 935437 935823 R hypothetical protein complement(935437..935823) Shewanella denitrificans OS217 4017039 YP_561829.1 CDS Sden_0817 NC_007954.1 936051 937286 D UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 936051..937286 Shewanella denitrificans OS217 4017040 YP_561830.1 CDS Sden_0818 NC_007954.1 937379 937966 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 937379..937966 Shewanella denitrificans OS217 4017041 YP_561831.1 CDS Sden_0819 NC_007954.1 938057 939148 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 938057..939148 Shewanella denitrificans OS217 4017042 YP_561832.1 CDS Sden_0820 NC_007954.1 939251 939559 R hypothetical protein complement(939251..939559) Shewanella denitrificans OS217 4017043 YP_561833.1 CDS Sden_0821 NC_007954.1 941178 941567 D hypothetical protein 941178..941567 Shewanella denitrificans OS217 4017090 YP_561834.1 CDS Sden_0822 NC_007954.1 941609 942418 D Beta-lactamase 941609..942418 Shewanella denitrificans OS217 4017091 YP_561835.1 CDS Sden_0823 NC_007954.1 942612 943904 D O-acetylhomoserine/O-acetylserine sulfhydrylase 942612..943904 Shewanella denitrificans OS217 4017092 YP_561836.1 CDS Sden_0824 NC_007954.1 944095 946281 D hypothetical protein 944095..946281 Shewanella denitrificans OS217 4017093 YP_561837.1 CDS Sden_0825 NC_007954.1 946603 947085 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(946603..947085) Shewanella denitrificans OS217 4017094 YP_561838.1 CDS Sden_0826 NC_007954.1 947352 948287 D oxidizes malate to oxaloacetate; malate dehydrogenase 947352..948287 Shewanella denitrificans OS217 4017095 YP_561839.1 CDS Sden_0827 NC_007954.1 948369 949121 D short chain dehydrogenase 948369..949121 Shewanella denitrificans OS217 4017096 YP_561840.1 CDS Sden_0828 NC_007954.1 949499 950260 R 5-formyltetrahydrofolate cyclo-ligase complement(949499..950260) Shewanella denitrificans OS217 4017097 YP_561841.1 CDS Sden_0829 NC_007954.1 950500 950808 R hypothetical protein complement(950500..950808) Shewanella denitrificans OS217 4017098 YP_561842.1 CDS Sden_0830 NC_007954.1 951171 951746 D YgfB and YecA 951171..951746 Shewanella denitrificans OS217 4017099 YP_561843.1 CDS Sden_0831 NC_007954.1 951782 953047 D 2-polyprenyl-6-methoxyphenol 4-hydroxylase 951782..953047 Shewanella denitrificans OS217 4017100 YP_561844.1 CDS Sden_0832 NC_007954.1 953124 954341 D UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 953124..954341 Shewanella denitrificans OS217 4017101 YP_561845.1 CDS gcvT NC_007954.1 954579 955673 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 954579..955673 Shewanella denitrificans OS217 4016797 YP_561846.1 CDS Sden_0834 NC_007954.1 955752 956141 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 955752..956141 Shewanella denitrificans OS217 4016798 YP_561847.1 CDS Sden_0835 NC_007954.1 956295 959249 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 956295..959249 Shewanella denitrificans OS217 4016799 YP_561848.1 CDS Sden_0836 NC_007954.1 960047 961120 D nucleoid-associated protein-like protein 960047..961120 Shewanella denitrificans OS217 4016800 YP_561849.1 CDS Sden_0837 NC_007954.1 961101 962483 D hypothetical protein 961101..962483 Shewanella denitrificans OS217 4016801 YP_561850.1 CDS Sden_0838 NC_007954.1 963343 964860 D filamentation induced by cAMP protein Fic 963343..964860 Shewanella denitrificans OS217 4016802 YP_561851.1 CDS Sden_0840 NC_007954.1 965047 965232 D inner membrane protein 965047..965232 Shewanella denitrificans OS217 4016804 YP_561852.1 CDS Sden_0841 NC_007954.1 965239 965946 R hypothetical protein complement(965239..965946) Shewanella denitrificans OS217 4016805 YP_561853.1 CDS Sden_0842 NC_007954.1 966009 966263 R hypothetical protein complement(966009..966263) Shewanella denitrificans OS217 4016806 YP_561854.1 CDS Sden_0843 NC_007954.1 966933 967262 D hypothetical protein 966933..967262 Shewanella denitrificans OS217 4016807 YP_561855.1 CDS Sden_0844 NC_007954.1 967262 968443 D major facilitator transporter 967262..968443 Shewanella denitrificans OS217 4016808 YP_561856.1 CDS Sden_0845 NC_007954.1 968697 968957 D hypothetical protein 968697..968957 Shewanella denitrificans OS217 4016809 YP_561857.1 CDS Sden_0846 NC_007954.1 969067 970449 R amidohydrolase complement(969067..970449) Shewanella denitrificans OS217 4016810 YP_561858.1 CDS Sden_0847 NC_007954.1 970517 971215 R response regulator receiver complement(970517..971215) Shewanella denitrificans OS217 4016811 YP_561859.1 CDS Sden_0848 NC_007954.1 971209 972189 R histidine kinase internal region complement(971209..972189) Shewanella denitrificans OS217 4016812 YP_561860.1 CDS Sden_0849 NC_007954.1 972421 972669 D hypothetical protein 972421..972669 Shewanella denitrificans OS217 4016813 YP_561861.1 CDS Sden_0850 NC_007954.1 972869 973504 D lysine exporter protein LysE/YggA 972869..973504 Shewanella denitrificans OS217 4016814 YP_561862.1 CDS Sden_0851 NC_007954.1 973993 975279 R Serine-type D-Ala-D-Ala carboxypeptidase complement(973993..975279) Shewanella denitrificans OS217 4016815 YP_561863.1 CDS Sden_0852 NC_007954.1 975390 976283 R rare lipoprotein A complement(975390..976283) Shewanella denitrificans OS217 4016816 YP_561864.1 CDS Sden_0853 NC_007954.1 976273 977283 R lytic murein transglycosylase B complement(976273..977283) Shewanella denitrificans OS217 4017048 YP_561865.1 CDS Sden_0854 NC_007954.1 977293 978399 R rod shape-determining protein RodA complement(977293..978399) Shewanella denitrificans OS217 4017049 YP_561866.1 CDS Sden_0855 NC_007954.1 978396 980252 R peptidoglycan glycosyltransferase complement(978396..980252) Shewanella denitrificans OS217 4017050 YP_561867.1 CDS Sden_0856 NC_007954.1 980353 980823 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(980353..980823) Shewanella denitrificans OS217 4017051 YP_561868.1 CDS Sden_0857 NC_007954.1 980824 981153 R Iojap-related protein complement(980824..981153) Shewanella denitrificans OS217 4017052 YP_561869.1 CDS Sden_0858 NC_007954.1 981619 981795 D hypothetical protein 981619..981795 Shewanella denitrificans OS217 4017053 YP_561870.1 CDS Sden_0859 NC_007954.1 981923 983719 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(981923..983719) Shewanella denitrificans OS217 4017054 YP_561871.1 CDS Sden_0860 NC_007954.1 983719 985560 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(983719..985560) Shewanella denitrificans OS217 4017055 YP_561872.1 CDS Sden_0861 NC_007954.1 985974 987419 D chemotaxis sensory transducer 985974..987419 Shewanella denitrificans OS217 4017056 YP_561873.1 CDS Sden_0862 NC_007954.1 987496 987942 R hypothetical protein complement(987496..987942) Shewanella denitrificans OS217 4017057 YP_561874.1 CDS Sden_0863 NC_007954.1 988430 989104 D nitroreductase 988430..989104 Shewanella denitrificans OS217 4017058 YP_561875.1 CDS Sden_0864 NC_007954.1 989116 989559 R GCN5-related N-acetyltransferase complement(989116..989559) Shewanella denitrificans OS217 4017059 YP_561876.1 CDS Sden_0865 NC_007954.1 989886 990155 D hypothetical protein 989886..990155 Shewanella denitrificans OS217 4017060 YP_561877.1 CDS Sden_0866 NC_007954.1 990155 990697 D GCN5-related N-acetyltransferase 990155..990697 Shewanella denitrificans OS217 4017061 YP_561878.1 CDS Sden_0867 NC_007954.1 990760 991725 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(990760..991725) Shewanella denitrificans OS217 4017062 YP_561879.1 CDS lipB NC_007954.1 991727 992410 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(991727..992410) Shewanella denitrificans OS217 4017063 YP_561880.1 CDS Sden_0869 NC_007954.1 992466 992765 R hypothetical protein complement(992466..992765) Shewanella denitrificans OS217 4017064 YP_561881.1 CDS Sden_0870 NC_007954.1 993068 994612 D hypothetical protein 993068..994612 Shewanella denitrificans OS217 4017065 YP_561882.1 CDS Sden_0871 NC_007954.1 994704 996212 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(994704..996212) Shewanella denitrificans OS217 4017066 YP_561883.1 CDS Sden_0872 NC_007954.1 996624 997736 D permease YjgP/YjgQ 996624..997736 Shewanella denitrificans OS217 4016973 YP_561884.1 CDS Sden_0873 NC_007954.1 997736 998791 D permease YjgP/YjgQ 997736..998791 Shewanella denitrificans OS217 4016974 YP_561885.1 CDS Sden_0874 NC_007954.1 998888 1000030 R hypothetical protein complement(998888..1000030) Shewanella denitrificans OS217 4016975 YP_561886.1 CDS Sden_0875 NC_007954.1 1000293 1001144 D signal transduction protein 1000293..1001144 Shewanella denitrificans OS217 4016976 YP_561887.1 CDS Sden_0876 NC_007954.1 1001228 1001737 R hypothetical protein complement(1001228..1001737) Shewanella denitrificans OS217 4016977 YP_561888.1 CDS Sden_0877 NC_007954.1 1001740 1001991 R hypothetical protein complement(1001740..1001991) Shewanella denitrificans OS217 4016978 YP_561889.1 CDS Sden_0878 NC_007954.1 1002094 1002645 R GCN5-related N-acetyltransferase complement(1002094..1002645) Shewanella denitrificans OS217 4016979 YP_561890.1 CDS Sden_0879 NC_007954.1 1003816 1004514 R hypothetical protein complement(1003816..1004514) Shewanella denitrificans OS217 4016980 YP_561891.1 CDS Sden_0880 NC_007954.1 1005082 1005672 R carboxypeptidase complement(1005082..1005672) Shewanella denitrificans OS217 4016981 YP_561892.1 CDS Sden_0881 NC_007954.1 1005792 1006808 D transposase IS116/IS110/IS902 1005792..1006808 Shewanella denitrificans OS217 4016982 YP_561893.1 CDS Sden_0882 NC_007954.1 1006908 1007963 R thermostable carboxypeptidase 1 complement(1006908..1007963) Shewanella denitrificans OS217 4016983 YP_561894.1 CDS Sden_0883 NC_007954.1 1008024 1008770 R hypothetical protein complement(1008024..1008770) Shewanella denitrificans OS217 4016984 YP_561895.1 CDS Sden_0884 NC_007954.1 1008879 1009487 R hypothetical protein complement(1008879..1009487) Shewanella denitrificans OS217 4016985 YP_561896.1 CDS Sden_0885 NC_007954.1 1009734 1010405 R alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1009734..1010405) Shewanella denitrificans OS217 4016986 YP_561897.1 CDS Sden_0886 NC_007954.1 1010579 1011880 R DEAD/DEAH box helicase-like protein complement(1010579..1011880) Shewanella denitrificans OS217 4016987 YP_561898.1 CDS Sden_0887 NC_007954.1 1012252 1014066 R peptidase M24 complement(1012252..1014066) Shewanella denitrificans OS217 4016988 YP_561899.1 CDS Sden_0888 NC_007954.1 1014265 1015524 D peptidase M24 1014265..1015524 Shewanella denitrificans OS217 4016989 YP_561900.1 CDS Sden_0889 NC_007954.1 1015934 1016410 R peptidylprolyl isomerase, FKBP-type complement(1015934..1016410) Shewanella denitrificans OS217 4016990 YP_561901.1 CDS Sden_0890 NC_007954.1 1016565 1017227 R YceI complement(1016565..1017227) Shewanella denitrificans OS217 4016991 YP_561902.1 CDS Sden_0891 NC_007954.1 1017380 1018801 D DEAD/DEAH box helicase-like protein 1017380..1018801 Shewanella denitrificans OS217 4016992 YP_561903.1 CDS Sden_0892 NC_007954.1 1018921 1019958 R abortive infection protein complement(1018921..1019958) Shewanella denitrificans OS217 4016701 YP_561904.1 CDS Sden_0893 NC_007954.1 1020023 1020907 R hypothetical protein complement(1020023..1020907) Shewanella denitrificans OS217 4016702 YP_561905.1 CDS Sden_0894 NC_007954.1 1020897 1021304 R transcriptional regulator PadR-like protein complement(1020897..1021304) Shewanella denitrificans OS217 4016703 YP_561906.1 CDS Sden_0895 NC_007954.1 1021772 1022182 D hypothetical protein 1021772..1022182 Shewanella denitrificans OS217 4016704 YP_561907.1 CDS Sden_0896 NC_007954.1 1022449 1023258 D methyltransferase type 11 1022449..1023258 Shewanella denitrificans OS217 4016705 YP_561908.1 CDS Sden_0897 NC_007954.1 1023323 1023988 R hypothetical protein complement(1023323..1023988) Shewanella denitrificans OS217 4016706 YP_561909.1 CDS def NC_007954.1 1024284 1024787 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1024284..1024787 Shewanella denitrificans OS217 4016707 YP_561910.1 CDS Sden_0899 NC_007954.1 1024976 1025581 D methyltransferase type 11 1024976..1025581 Shewanella denitrificans OS217 4016708 YP_561911.1 CDS Sden_0900 NC_007954.1 1025843 1026928 D L-sorbosone dehydrogenase (SNDH) 1025843..1026928 Shewanella denitrificans OS217 4016709 YP_561912.1 CDS Sden_0901 NC_007954.1 1026943 1029150 D TonB-dependent receptor 1026943..1029150 Shewanella denitrificans OS217 4016710 YP_561913.1 CDS Sden_0902 NC_007954.1 1029249 1030061 D regulatory protein RecX 1029249..1030061 Shewanella denitrificans OS217 4016711 YP_561914.1 CDS Sden_0903 NC_007954.1 1030095 1030781 R hypothetical protein complement(1030095..1030781) Shewanella denitrificans OS217 4016712 YP_561915.1 CDS Sden_0904 NC_007954.1 1030875 1031105 R peptidase M13 family protein complement(1030875..1031105) Shewanella denitrificans OS217 4016713 YP_561916.1 CDS Sden_0905 NC_007954.1 1031416 1032027 D TonB-like protein 1031416..1032027 Shewanella denitrificans OS217 4016714 YP_561917.1 CDS Sden_0906 NC_007954.1 1032228 1032791 D NUDIX hydrolase 1032228..1032791 Shewanella denitrificans OS217 4016715 YP_561918.1 CDS Sden_0907 NC_007954.1 1032929 1034401 D carbon starvation protein CstA 1032929..1034401 Shewanella denitrificans OS217 4016716 YP_561919.1 CDS Sden_0908 NC_007954.1 1034670 1035956 D FAD dependent oxidoreductase 1034670..1035956 Shewanella denitrificans OS217 4016717 YP_561920.1 CDS Sden_0909 NC_007954.1 1036041 1037507 D succinic semialdehyde dehydrogenase 1036041..1037507 Shewanella denitrificans OS217 4016718 YP_561921.1 CDS Sden_0910 NC_007954.1 1037517 1038794 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1037517..1038794 Shewanella denitrificans OS217 4016719 YP_561922.1 CDS Sden_0911 NC_007954.1 1039093 1041210 D chemotaxis sensory transducer 1039093..1041210 Shewanella denitrificans OS217 4016817 YP_561923.1 CDS Sden_0912 NC_007954.1 1041395 1041913 D avidin/streptavidin 1041395..1041913 Shewanella denitrificans OS217 4016818 YP_561924.1 CDS Sden_0913 NC_007954.1 1042141 1042455 D cupin 2, barrel 1042141..1042455 Shewanella denitrificans OS217 4016819 YP_561925.1 CDS Sden_0914 NC_007954.1 1042522 1043292 R EAL domain-containing protein complement(1042522..1043292) Shewanella denitrificans OS217 4016820 YP_561926.1 CDS Sden_0915 NC_007954.1 1043911 1044786 R hypothetical protein complement(1043911..1044786) Shewanella denitrificans OS217 4016821 YP_561927.1 CDS Sden_0916 NC_007954.1 1046424 1047371 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1046424..1047371) Shewanella denitrificans OS217 4016822 YP_561928.1 CDS ipk NC_007954.1 1047463 1048317 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1047463..1048317) Shewanella denitrificans OS217 4016823 YP_561929.1 CDS Sden_0918 NC_007954.1 1048395 1049006 R outer membrane lipoprotein LolB complement(1048395..1049006) Shewanella denitrificans OS217 4016824 YP_561930.1 CDS hemA NC_007954.1 1049263 1050513 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1049263..1050513 Shewanella denitrificans OS217 4016825 YP_561931.1 CDS prfA NC_007954.1 1050528 1051613 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1050528..1051613 Shewanella denitrificans OS217 4016826 YP_561932.1 CDS Sden_0921 NC_007954.1 1051623 1052477 D HemK family modification methylase 1051623..1052477 Shewanella denitrificans OS217 4016827 YP_561933.1 CDS Sden_0922 NC_007954.1 1052597 1052983 D invasion gene expression up-regulator, SirB 1052597..1052983 Shewanella denitrificans OS217 4016828 YP_561934.1 CDS Sden_0923 NC_007954.1 1052993 1053775 D hypothetical protein 1052993..1053775 Shewanella denitrificans OS217 4016829 YP_561935.1 CDS Sden_0924 NC_007954.1 1053879 1055126 D hypothetical protein 1053879..1055126 Shewanella denitrificans OS217 4016830 YP_561936.1 CDS Sden_0925 NC_007954.1 1055139 1055999 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1055139..1055999 Shewanella denitrificans OS217 4016831 YP_561937.1 CDS Sden_0926 NC_007954.1 1056239 1056775 D GCN5-related N-acetyltransferase 1056239..1056775 Shewanella denitrificans OS217 4016832 YP_561938.1 CDS Sden_0927 NC_007954.1 1057154 1057366 D cold-shock protein, DNA-binding 1057154..1057366 Shewanella denitrificans OS217 4016833 YP_561939.1 CDS Sden_0928 NC_007954.1 1057570 1058280 R hypothetical protein complement(1057570..1058280) Shewanella denitrificans OS217 4016834 YP_561940.1 CDS Sden_0929 NC_007954.1 1058657 1059886 R hypothetical protein complement(1058657..1059886) Shewanella denitrificans OS217 4016835 YP_561941.1 CDS pntB NC_007954.1 1060449 1061933 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(1060449..1061933) Shewanella denitrificans OS217 4016836 YP_561942.1 CDS pntA NC_007954.1 1061945 1063501 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(1061945..1063501) Shewanella denitrificans OS217 4016876 YP_561943.1 CDS Sden_0932 NC_007954.1 1063845 1065644 D sulfite reductase (NADPH) flavoprotein, alpha chain 1063845..1065644 Shewanella denitrificans OS217 4016877 YP_561944.1 CDS Sden_0933 NC_007954.1 1065748 1067436 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1065748..1067436 Shewanella denitrificans OS217 4016878 YP_561945.1 CDS Sden_0934 NC_007954.1 1067429 1068208 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1067429..1068208 Shewanella denitrificans OS217 4016879 YP_561946.1 CDS Sden_0935 NC_007954.1 1068888 1069304 D glyoxalase/bleomycin resistance protein/dioxygenase 1068888..1069304 Shewanella denitrificans OS217 4016880 YP_561947.1 CDS Sden_0936 NC_007954.1 1069402 1069785 D hypothetical protein 1069402..1069785 Shewanella denitrificans OS217 4016881 YP_561948.1 CDS Sden_0937 NC_007954.1 1069937 1071655 D hypothetical protein 1069937..1071655 Shewanella denitrificans OS217 4016882 YP_561949.1 CDS Sden_0938 NC_007954.1 1071829 1072302 R blue (type1) copper domain-containing protein complement(1071829..1072302) Shewanella denitrificans OS217 4016883 YP_561950.1 CDS Sden_0939 NC_007954.1 1072492 1073400 R catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase complement(1072492..1073400) Shewanella denitrificans OS217 4016884 YP_561951.2 CDS rihA NC_007954.1 1073470 1074405 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(1073470..1074405) Shewanella denitrificans OS217 4016885 YP_561952.1 CDS Sden_0941 NC_007954.1 1074786 1075310 D hypothetical protein 1074786..1075310 Shewanella denitrificans OS217 4016886 YP_561953.1 CDS Sden_0942 NC_007954.1 1075356 1076363 R GGDEF domain-containing protein complement(1075356..1076363) Shewanella denitrificans OS217 4016887 YP_561954.1 CDS Sden_0943 NC_007954.1 1077171 1077578 R hypothetical protein complement(1077171..1077578) Shewanella denitrificans OS217 4016888 YP_561955.1 CDS Sden_0944 NC_007954.1 1077649 1081044 R transcriptional regulatory protein-like protein complement(1077649..1081044) Shewanella denitrificans OS217 4016889 YP_561956.1 CDS Sden_0945 NC_007954.1 1081251 1082855 R amino acid/peptide transporter complement(1081251..1082855) Shewanella denitrificans OS217 4016890 YP_561957.1 CDS Sden_0946 NC_007954.1 1082947 1083759 R hypothetical protein complement(1082947..1083759) Shewanella denitrificans OS217 4016891 YP_561958.1 CDS Sden_0947 NC_007954.1 1083769 1084494 R hypothetical protein complement(1083769..1084494) Shewanella denitrificans OS217 4016892 YP_561959.1 CDS Sden_0948 NC_007954.1 1084526 1086385 R amidohydrolase 3 complement(1084526..1086385) Shewanella denitrificans OS217 4016893 YP_561960.1 CDS Sden_0949 NC_007954.1 1086541 1087341 D uroporphyrin-III C/tetrapyrrole methyltransferase 1086541..1087341 Shewanella denitrificans OS217 4016894 YP_561961.1 CDS Sden_0950 NC_007954.1 1087462 1087737 D hypothetical protein 1087462..1087737 Shewanella denitrificans OS217 4016552 YP_561962.1 CDS Sden_0951 NC_007954.1 1088024 1090108 D GGDEF domain-containing protein 1088024..1090108 Shewanella denitrificans OS217 4016553 YP_561963.1 CDS Sden_0952 NC_007954.1 1090101 1091183 D hypothetical protein 1090101..1091183 Shewanella denitrificans OS217 4016554 YP_561964.1 CDS Sden_0953 NC_007954.1 1091467 1092669 D hypothetical protein 1091467..1092669 Shewanella denitrificans OS217 4016555 YP_561965.1 CDS Sden_0954 NC_007954.1 1093018 1094373 D peptidase S41 1093018..1094373 Shewanella denitrificans OS217 4016556 YP_561966.1 CDS Sden_0955 NC_007954.1 1094511 1095428 R phospholipase A1 complement(1094511..1095428) Shewanella denitrificans OS217 4016557 YP_561967.1 CDS Sden_0956 NC_007954.1 1095679 1096425 R TraT complement resistance complement(1095679..1096425) Shewanella denitrificans OS217 4016558 YP_561968.1 CDS Sden_0957 NC_007954.1 1096462 1096803 R orphan protein complement(1096462..1096803) Shewanella denitrificans OS217 4016559 YP_561969.1 CDS Sden_0958 NC_007954.1 1097108 1097929 D uroporphyrin-III C-methyltransferase 1097108..1097929 Shewanella denitrificans OS217 4016560 YP_561970.1 CDS Sden_0959 NC_007954.1 1097986 1098894 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1097986..1098894 Shewanella denitrificans OS217 4016561 YP_561971.1 CDS cysN NC_007954.1 1098959 1100401 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1098959..1100401 Shewanella denitrificans OS217 4016562 YP_561972.1 CDS Sden_0961 NC_007954.1 1100405 1102129 D TrkA-C 1100405..1102129 Shewanella denitrificans OS217 4016563 YP_561973.1 CDS Sden_0962 NC_007954.1 1102172 1102789 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1102172..1102789 Shewanella denitrificans OS217 4016564 YP_561974.1 CDS Sden_0963 NC_007954.1 1103293 1103958 D MOSC domain-containing protein 1103293..1103958 Shewanella denitrificans OS217 4016565 YP_561975.1 CDS Sden_0964 NC_007954.1 1104179 1104781 D hypothetical protein 1104179..1104781 Shewanella denitrificans OS217 4016566 YP_561976.1 CDS Sden_0965 NC_007954.1 1106924 1107316 D hypothetical protein 1106924..1107316 Shewanella denitrificans OS217 4016567 YP_561977.1 CDS Sden_0966 NC_007954.1 1108580 1109395 R hypothetical protein complement(1108580..1109395) Shewanella denitrificans OS217 4016568 YP_561978.1 CDS Sden_0967 NC_007954.1 1109392 1110351 R hypothetical protein complement(1109392..1110351) Shewanella denitrificans OS217 4016569 YP_561979.1 CDS Sden_0968 NC_007954.1 1110491 1110949 R lipoprotein complement(1110491..1110949) Shewanella denitrificans OS217 4016570 YP_561980.1 CDS Sden_0969 NC_007954.1 1111263 1111673 D curli production assembly/transport component CsgE 1111263..1111673 Shewanella denitrificans OS217 4016571 YP_561981.1 CDS Sden_0970 NC_007954.1 1111684 1112091 D curli production assembly/transport component CsgF 1111684..1112091 Shewanella denitrificans OS217 4016740 YP_561982.1 CDS Sden_0971 NC_007954.1 1112091 1112888 D curli production assembly/transport component CsgG 1112091..1112888 Shewanella denitrificans OS217 4016741 YP_561983.1 CDS Sden_0972 NC_007954.1 1112941 1113855 R GGDEF domain-containing protein complement(1112941..1113855) Shewanella denitrificans OS217 4016742 YP_561984.1 CDS Sden_0973 NC_007954.1 1113996 1114886 D esterase 1113996..1114886 Shewanella denitrificans OS217 4016743 YP_561985.1 CDS Sden_0974 NC_007954.1 1114940 1115557 R regulatory protein, TetR complement(1114940..1115557) Shewanella denitrificans OS217 4016744 YP_561986.1 CDS Sden_0975 NC_007954.1 1115631 1117052 R aldehyde dehydrogenase complement(1115631..1117052) Shewanella denitrificans OS217 4016745 YP_561987.1 CDS Sden_0976 NC_007954.1 1117291 1117722 D hypothetical protein 1117291..1117722 Shewanella denitrificans OS217 4016746 YP_561988.1 CDS Sden_0977 NC_007954.1 1117853 1118422 R hypothetical protein complement(1117853..1118422) Shewanella denitrificans OS217 4016747 YP_561989.1 CDS Sden_0978 NC_007954.1 1118529 1118834 D hypothetical protein 1118529..1118834 Shewanella denitrificans OS217 4016748 YP_561990.1 CDS Sden_0979 NC_007954.1 1118839 1119606 D 2OG-Fe(II) oxygenase 1118839..1119606 Shewanella denitrificans OS217 4016749 YP_561991.1 CDS Sden_0980 NC_007954.1 1119742 1120041 D BolA-like protein 1119742..1120041 Shewanella denitrificans OS217 4016750 YP_561992.1 CDS Sden_0981 NC_007954.1 1120219 1120728 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1120219..1120728 Shewanella denitrificans OS217 4016751 YP_561993.1 CDS Sden_0982 NC_007954.1 1120953 1122287 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1120953..1122287 Shewanella denitrificans OS217 4016752 YP_561994.1 CDS Sden_0983 NC_007954.1 1122287 1123486 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1122287..1123486 Shewanella denitrificans OS217 4016753 YP_561995.1 CDS Sden_0984 NC_007954.1 1123479 1124276 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1123479..1124276 Shewanella denitrificans OS217 4016754 YP_561996.1 CDS Sden_0985 NC_007954.1 1124276 1124908 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1124276..1124908 Shewanella denitrificans OS217 4016755 YP_561997.1 CDS Sden_0986 NC_007954.1 1124914 1125522 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1124914..1125522 Shewanella denitrificans OS217 4016756 YP_561998.1 CDS Sden_0987 NC_007954.1 1125569 1126795 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1125569..1126795 Shewanella denitrificans OS217 4016757 YP_561999.1 CDS Sden_0988 NC_007954.1 1126820 1127932 D ApbE-like lipoprotein 1126820..1127932 Shewanella denitrificans OS217 4016758 YP_562000.1 CDS Sden_0989 NC_007954.1 1127946 1128170 D hypothetical protein 1127946..1128170 Shewanella denitrificans OS217 4017586 YP_562001.1 CDS Sden_0990 NC_007954.1 1128386 1128856 D bacterioferritin 1128386..1128856 Shewanella denitrificans OS217 4017587 YP_562002.1 CDS Sden_0991 NC_007954.1 1128921 1129388 D bacterioferritin 1128921..1129388 Shewanella denitrificans OS217 4017588 YP_562003.1 CDS Sden_0992 NC_007954.1 1129560 1130378 D peptidase M48, Ste24p 1129560..1130378 Shewanella denitrificans OS217 4017589 YP_562004.1 CDS Sden_0993 NC_007954.1 1130476 1131093 D peptidylprolyl isomerase, FKBP-type 1130476..1131093 Shewanella denitrificans OS217 4017590 YP_562005.1 CDS Sden_0994 NC_007954.1 1131181 1131993 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1131181..1131993 Shewanella denitrificans OS217 4017591 YP_562006.1 CDS Sden_0995 NC_007954.1 1132173 1133318 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1132173..1133318 Shewanella denitrificans OS217 4017592 YP_562007.1 CDS carB NC_007954.1 1133346 1136573 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1133346..1136573 Shewanella denitrificans OS217 4017593 YP_562008.1 CDS Sden_0997 NC_007954.1 1136835 1137311 D transcription elongation factor GreA 1136835..1137311 Shewanella denitrificans OS217 4017594 YP_562009.1 CDS Sden_0998 NC_007954.1 1137462 1137761 R hypothetical protein complement(1137462..1137761) Shewanella denitrificans OS217 4017595 YP_562010.1 CDS rrmJ NC_007954.1 1137852 1138481 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1137852..1138481 Shewanella denitrificans OS217 4017596 YP_562011.1 CDS Sden_1000 NC_007954.1 1138527 1140497 D ATP-dependent metalloprotease FtsH 1138527..1140497 Shewanella denitrificans OS217 4017597 YP_562012.1 CDS Sden_1001 NC_007954.1 1140599 1141447 D dihydropteroate synthase 1140599..1141447 Shewanella denitrificans OS217 4017598 YP_562013.1 CDS glmM NC_007954.1 1141540 1142877 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1141540..1142877 Shewanella denitrificans OS217 4017599 YP_562014.1 CDS Sden_1003 NC_007954.1 1143049 1143831 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1143049..1143831 Shewanella denitrificans OS217 4017600 YP_562015.1 CDS secG NC_007954.1 1143835 1144167 D preprotein translocase subunit SecG 1143835..1144167 Shewanella denitrificans OS217 4017601 YP_562016.1 CDS Sden_1005 NC_007954.1 1144593 1145048 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1144593..1145048 Shewanella denitrificans OS217 4016572 YP_562017.1 CDS nusA NC_007954.1 1145078 1146577 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1145078..1146577 Shewanella denitrificans OS217 4016573 YP_562018.1 CDS infB NC_007954.1 1146603 1149257 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1146603..1149257 Shewanella denitrificans OS217 4016574 YP_562019.1 CDS rbfA NC_007954.1 1149329 1149757 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1149329..1149757 Shewanella denitrificans OS217 4016575 YP_562020.1 CDS truB NC_007954.1 1149757 1150710 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1149757..1150710 Shewanella denitrificans OS217 4016576 YP_562021.1 CDS rpsO NC_007954.1 1150872 1151141 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1150872..1151141 Shewanella denitrificans OS217 4016578 YP_562022.1 CDS Sden_1011 NC_007954.1 1151319 1152779 R peptidase M20C, Xaa-His dipeptidase complement(1151319..1152779) Shewanella denitrificans OS217 4016579 YP_562023.1 CDS Sden_1012 NC_007954.1 1153661 1154950 D xanthine/uracil/vitamin C permease 1153661..1154950 Shewanella denitrificans OS217 4016580 YP_562024.1 CDS Sden_1013 NC_007954.1 1155975 1156589 D hypothetical protein 1155975..1156589 Shewanella denitrificans OS217 4016581 YP_562025.1 CDS Sden_1014 NC_007954.1 1156936 1157625 D pseudouridine synthase 1156936..1157625 Shewanella denitrificans OS217 4016582 YP_562026.1 CDS Sden_1015 NC_007954.1 1157738 1158259 D NADPH-dependent FMN reductase 1157738..1158259 Shewanella denitrificans OS217 4016583 YP_562027.1 CDS Sden_1016 NC_007954.1 1158394 1160286 R peptidase S8/S53 subtilisin kexin sedolisin complement(1158394..1160286) Shewanella denitrificans OS217 4016584 YP_562028.1 CDS Sden_1017 NC_007954.1 1160693 1161439 D hypothetical protein 1160693..1161439 Shewanella denitrificans OS217 4016585 YP_562029.1 CDS Sden_1018 NC_007954.1 1161442 1163478 R GGDEF domain-containing protein complement(1161442..1163478) Shewanella denitrificans OS217 4016586 YP_562030.1 CDS Sden_1019 NC_007954.1 1164035 1166140 D polynucleotide phosphorylase/polyadenylase 1164035..1166140 Shewanella denitrificans OS217 4016587 YP_562031.1 CDS Sden_1020 NC_007954.1 1166287 1167183 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1166287..1167183 Shewanella denitrificans OS217 4016588 YP_562032.1 CDS prfC NC_007954.1 1167403 1168986 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1167403..1168986 Shewanella denitrificans OS217 4016589 YP_562033.1 CDS Sden_1022 NC_007954.1 1169080 1169847 D TatD-related deoxyribonuclease 1169080..1169847 Shewanella denitrificans OS217 4017067 YP_562034.1 CDS Sden_1023 NC_007954.1 1170024 1171286 D nucleoside transporter 1170024..1171286 Shewanella denitrificans OS217 4017068 YP_562035.1 CDS Sden_1024 NC_007954.1 1171613 1172500 D nucleoside-specific channel-forming protein, Tsx 1171613..1172500 Shewanella denitrificans OS217 4017069 YP_562036.1 CDS Sden_1025 NC_007954.1 1172874 1173650 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1172874..1173650 Shewanella denitrificans OS217 4017070 YP_562037.1 CDS deoA NC_007954.1 1173774 1175105 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1173774..1175105 Shewanella denitrificans OS217 4017071 YP_562038.1 CDS Sden_1027 NC_007954.1 1175117 1176334 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1175117..1176334 Shewanella denitrificans OS217 4017072 YP_562039.1 CDS deoD NC_007954.1 1176420 1177130 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1176420..1177130 Shewanella denitrificans OS217 4017073 YP_562040.1 CDS Sden_1029 NC_007954.1 1177420 1178319 D hypothetical protein 1177420..1178319 Shewanella denitrificans OS217 4017074 YP_562041.1 CDS Sden_1030 NC_007954.1 1178778 1180223 R GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A complement(1178778..1180223) Shewanella denitrificans OS217 4017075 YP_562042.1 CDS Sden_1031 NC_007954.1 1180646 1181242 R membrane protein complement(1180646..1181242) Shewanella denitrificans OS217 4017076 YP_562043.1 CDS Sden_1032 NC_007954.1 1181425 1182471 D phosphoserine phosphatase SerB 1181425..1182471 Shewanella denitrificans OS217 4017077 YP_562044.1 CDS Sden_1033 NC_007954.1 1182706 1183617 D hypothetical protein 1182706..1183617 Shewanella denitrificans OS217 4017078 YP_562045.1 CDS Sden_1034 NC_007954.1 1183696 1186086 R type IV pilus assembly PilZ complement(1183696..1186086) Shewanella denitrificans OS217 4017079 YP_562046.1 CDS Sden_1035 NC_007954.1 1186261 1187637 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1186261..1187637 Shewanella denitrificans OS217 4017080 YP_562047.1 CDS Sden_1036 NC_007954.1 1187745 1188122 R type IV pilus assembly PilZ complement(1187745..1188122) Shewanella denitrificans OS217 4017081 YP_562048.1 CDS Sden_1037 NC_007954.1 1188447 1189805 R nucleoside recognition complement(1188447..1189805) Shewanella denitrificans OS217 4017082 YP_562049.1 CDS Sden_1038 NC_007954.1 1190151 1191020 R peptidase U32 complement(1190151..1191020) Shewanella denitrificans OS217 4017083 YP_562050.1 CDS Sden_1039 NC_007954.1 1191076 1192077 R peptidase U32 complement(1191076..1192077) Shewanella denitrificans OS217 4017084 YP_562051.1 CDS Sden_1040 NC_007954.1 1192225 1192770 D hypothetical protein 1192225..1192770 Shewanella denitrificans OS217 4017085 YP_562052.1 CDS Sden_1041 NC_007954.1 1192907 1193287 R hypothetical protein complement(1192907..1193287) Shewanella denitrificans OS217 4017086 YP_562053.1 CDS Sden_1042 NC_007954.1 1193534 1193914 D hypothetical protein 1193534..1193914 Shewanella denitrificans OS217 4017549 YP_562054.1 CDS Sden_1043 NC_007954.1 1193930 1194898 D hypothetical protein 1193930..1194898 Shewanella denitrificans OS217 4017550 YP_562055.1 CDS Sden_1044 NC_007954.1 1194911 1195168 R 4Fe-4S ferredoxin, iron-sulfur binding complement(1194911..1195168) Shewanella denitrificans OS217 4017551 YP_562056.1 CDS Sden_1045 NC_007954.1 1195168 1196577 R peptidase U32 complement(1195168..1196577) Shewanella denitrificans OS217 4017552 YP_562057.1 CDS Sden_1046 NC_007954.1 1196861 1197703 D hypothetical protein 1196861..1197703 Shewanella denitrificans OS217 4017553 YP_562058.1 CDS Sden_1047 NC_007954.1 1197760 1199262 D GGDEF domain-containing protein 1197760..1199262 Shewanella denitrificans OS217 4017554 YP_562059.1 CDS Sden_1048 NC_007954.1 1200439 1201260 D hypothetical protein 1200439..1201260 Shewanella denitrificans OS217 4017555 YP_562060.1 CDS Sden_1049 NC_007954.1 1201196 1202005 R integrase catalytic subunit complement(1201196..1202005) Shewanella denitrificans OS217 4017556 YP_562061.1 CDS Sden_1050 NC_007954.1 1202065 1202355 R transposase IS3/IS911 complement(1202065..1202355) Shewanella denitrificans OS217 4017557 YP_562062.1 CDS Sden_1051 NC_007954.1 1202865 1203296 R thioesterase superfamily protein complement(1202865..1203296) Shewanella denitrificans OS217 4017558 YP_562063.1 CDS Sden_1052 NC_007954.1 1203309 1204220 R amino acid ABC transporter complement(1203309..1204220) Shewanella denitrificans OS217 4017559 YP_562064.1 CDS Sden_1053 NC_007954.1 1204400 1204828 R regulatory proteins, AsnC/Lrp complement(1204400..1204828) Shewanella denitrificans OS217 4017560 YP_562065.1 CDS argD NC_007954.1 1204995 1206212 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1204995..1206212 Shewanella denitrificans OS217 4017561 YP_562066.1 CDS Sden_1055 NC_007954.1 1206363 1207406 D arginine N-succinyltransferase 1206363..1207406 Shewanella denitrificans OS217 4017562 YP_562067.1 CDS astD NC_007954.1 1207403 1208899 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1207403..1208899 Shewanella denitrificans OS217 4017563 YP_562068.1 CDS Sden_1057 NC_007954.1 1209014 1209817 D hypothetical protein 1209014..1209817 Shewanella denitrificans OS217 4017564 YP_562069.1 CDS Sden_1058 NC_007954.1 1210419 1210877 D hypothetical protein 1210419..1210877 Shewanella denitrificans OS217 4017565 YP_562070.1 CDS Sden_1059 NC_007954.1 1211562 1212194 R lysine exporter protein LysE/YggA complement(1211562..1212194) Shewanella denitrificans OS217 4017566 YP_562071.1 CDS Sden_1060 NC_007954.1 1212390 1212956 R hypothetical protein complement(1212390..1212956) Shewanella denitrificans OS217 4017567 YP_562072.1 CDS Sden_1061 NC_007954.1 1213228 1213464 R hypothetical protein complement(1213228..1213464) Shewanella denitrificans OS217 4016777 YP_562073.1 CDS Sden_1062 NC_007954.1 1214002 1214901 D band 7 protein 1214002..1214901 Shewanella denitrificans OS217 4016778 YP_562074.1 CDS Sden_1063 NC_007954.1 1215110 1215850 R short-chain dehydrogenase/reductase SDR complement(1215110..1215850) Shewanella denitrificans OS217 4016779 YP_562075.1 CDS Sden_1064 NC_007954.1 1215925 1216512 D transciptional regulator 1215925..1216512 Shewanella denitrificans OS217 4016780 YP_562076.1 CDS Sden_1065 NC_007954.1 1216579 1217097 R histidine triad (HIT) protein complement(1216579..1217097) Shewanella denitrificans OS217 4016781 YP_562077.1 CDS Sden_1066 NC_007954.1 1217099 1218718 R AMP-dependent synthetase and ligase complement(1217099..1218718) Shewanella denitrificans OS217 4016782 YP_562078.1 CDS Sden_1067 NC_007954.1 1218715 1220772 R Male sterility-like protein complement(1218715..1220772) Shewanella denitrificans OS217 4016783 YP_562079.1 CDS Sden_1068 NC_007954.1 1220848 1221087 R hypothetical protein complement(1220848..1221087) Shewanella denitrificans OS217 4016784 YP_562080.1 CDS Sden_1069 NC_007954.1 1221090 1221950 R hypothetical protein complement(1221090..1221950) Shewanella denitrificans OS217 4016785 YP_562081.1 CDS Sden_1070 NC_007954.1 1222643 1224286 R AMP-dependent synthetase and ligase complement(1222643..1224286) Shewanella denitrificans OS217 4016786 YP_562082.1 CDS Sden_1071 NC_007954.1 1224877 1225653 D extracellular solute-binding protein 1224877..1225653 Shewanella denitrificans OS217 4016787 YP_562083.1 CDS Sden_1072 NC_007954.1 1225748 1226509 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(1225748..1226509) Shewanella denitrificans OS217 4016788 YP_562084.1 CDS Sden_1073 NC_007954.1 1226533 1227933 R ethanolamine ammonia lyase large subunit complement(1226533..1227933) Shewanella denitrificans OS217 4016789 YP_562085.1 CDS Sden_1074 NC_007954.1 1227947 1229023 R spermidine/putrescine-binding periplasmic protein-like protein complement(1227947..1229023) Shewanella denitrificans OS217 4016790 YP_562086.1 CDS Sden_1075 NC_007954.1 1229482 1230945 D phospholipase D/transphosphatidylase 1229482..1230945 Shewanella denitrificans OS217 4016791 YP_562087.1 CDS Sden_1076 NC_007954.1 1231267 1232172 D ABC transporter related 1231267..1232172 Shewanella denitrificans OS217 4016792 YP_562088.1 CDS Sden_1077 NC_007954.1 1232172 1233713 D hypothetical protein 1232172..1233713 Shewanella denitrificans OS217 4016793 YP_562089.1 CDS Sden_1078 NC_007954.1 1233883 1234497 D lysine exporter protein LysE/YggA 1233883..1234497 Shewanella denitrificans OS217 4016794 YP_562090.1 CDS Sden_1079 NC_007954.1 1234701 1235483 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1234701..1235483 Shewanella denitrificans OS217 4016795 YP_562091.1 CDS Sden_1080 NC_007954.1 1235643 1236227 R hypothetical protein complement(1235643..1236227) Shewanella denitrificans OS217 4016796 YP_562092.1 CDS Sden_1081 NC_007954.1 1236275 1237288 R 2-dehydropantoate 2-reductase complement(1236275..1237288) Shewanella denitrificans OS217 4017364 YP_562093.1 CDS Sden_1082 NC_007954.1 1237499 1238650 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1237499..1238650) Shewanella denitrificans OS217 4017365 YP_562094.1 CDS Sden_1083 NC_007954.1 1239191 1241185 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1239191..1241185 Shewanella denitrificans OS217 4017366 YP_562095.2 CDS Sden_1084 NC_007954.1 1241359 1242387 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 1241359..1242387 Shewanella denitrificans OS217 4017367 YP_562096.1 CDS pgk NC_007954.1 1242603 1243778 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1242603..1243778 Shewanella denitrificans OS217 4017368 YP_562097.1 CDS Sden_1086 NC_007954.1 1244014 1245081 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1244014..1245081 Shewanella denitrificans OS217 4017369 YP_562098.1 CDS Sden_1087 NC_007954.1 1245229 1245969 D hypothetical protein 1245229..1245969 Shewanella denitrificans OS217 4017370 YP_562099.1 CDS Sden_1088 NC_007954.1 1246071 1246958 D transposase, IS4 1246071..1246958 Shewanella denitrificans OS217 4017371 YP_562100.1 CDS Sden_1089 NC_007954.1 1247056 1249143 R endothelin-converting protein 1 complement(1247056..1249143) Shewanella denitrificans OS217 4017372 YP_562101.1 CDS Sden_1090 NC_007954.1 1249505 1250194 D pseudouridine synthase, Rsu 1249505..1250194 Shewanella denitrificans OS217 4017373 YP_562102.1 CDS Sden_1091 NC_007954.1 1250909 1252771 D chemotaxis sensory transducer 1250909..1252771 Shewanella denitrificans OS217 4017374 YP_562103.1 CDS Sden_1092 NC_007954.1 1252906 1253565 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1252906..1253565) Shewanella denitrificans OS217 4017375 YP_562104.1 CDS Sden_1093 NC_007954.1 1253674 1254489 R MscS mechanosensitive ion channel complement(1253674..1254489) Shewanella denitrificans OS217 4017376 YP_562105.1 CDS Sden_1094 NC_007954.1 1254499 1255686 R hypothetical protein complement(1254499..1255686) Shewanella denitrificans OS217 4017377 YP_562106.1 CDS pbpG NC_007954.1 1255974 1256870 D specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1255974..1256870 Shewanella denitrificans OS217 4017378 YP_562107.1 CDS Sden_1096 NC_007954.1 1256952 1258208 R lipolytic enzyme, G-D-S-L complement(1256952..1258208) Shewanella denitrificans OS217 4017379 YP_562108.1 CDS Sden_1097 NC_007954.1 1258304 1259335 R hypothetical protein complement(1258304..1259335) Shewanella denitrificans OS217 4017380 YP_562109.1 CDS Sden_1098 NC_007954.1 1259339 1260256 R alpha/beta hydrolase fold complement(1259339..1260256) Shewanella denitrificans OS217 4017381 YP_562110.1 CDS Sden_1099 NC_007954.1 1260771 1262210 D hypothetical protein 1260771..1262210 Shewanella denitrificans OS217 4017382 YP_562111.1 CDS Sden_1100 NC_007954.1 1262288 1263211 R LysR, substrate-binding complement(1262288..1263211) Shewanella denitrificans OS217 4017643 YP_562112.1 CDS Sden_1101 NC_007954.1 1263666 1264064 D hypothetical protein 1263666..1264064 Shewanella denitrificans OS217 4017644 YP_562113.1 CDS Sden_1102 NC_007954.1 1264172 1264963 D phenazine biosynthesis PhzC/PhzF protein 1264172..1264963 Shewanella denitrificans OS217 4017645 YP_562114.1 CDS Sden_1103 NC_007954.1 1264972 1265316 D hypothetical protein 1264972..1265316 Shewanella denitrificans OS217 4017646 YP_562115.1 CDS Sden_1104 NC_007954.1 1265400 1266650 R cytochrome c, class I complement(1265400..1266650) Shewanella denitrificans OS217 4017647 YP_562116.1 CDS Sden_1105 NC_007954.1 1266647 1267183 R (2Fe-2S)-binding complement(1266647..1267183) Shewanella denitrificans OS217 4017648 YP_562117.1 CDS Sden_1106 NC_007954.1 1267180 1270053 R aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding complement(1267180..1270053) Shewanella denitrificans OS217 4017649 YP_562118.1 CDS Sden_1107 NC_007954.1 1270505 1270993 D GCN5-related N-acetyltransferase 1270505..1270993 Shewanella denitrificans OS217 4017650 YP_562119.1 CDS Sden_1108 NC_007954.1 1271112 1271810 D alpha/beta hydrolase fold 1271112..1271810 Shewanella denitrificans OS217 4017651 YP_562120.1 CDS Sden_1109 NC_007954.1 1272108 1273316 D sodium/hydrogen exchanger 1272108..1273316 Shewanella denitrificans OS217 4017652 YP_562121.1 CDS Sden_1110 NC_007954.1 1273504 1274016 D cupin 2, barrel 1273504..1274016 Shewanella denitrificans OS217 4017653 YP_562122.1 CDS Sden_1111 NC_007954.1 1274391 1275464 D hypothetical protein 1274391..1275464 Shewanella denitrificans OS217 4017654 YP_562123.1 CDS Sden_1112 NC_007954.1 1275806 1276708 D hypothetical protein 1275806..1276708 Shewanella denitrificans OS217 4017655 YP_562124.1 CDS Sden_1113 NC_007954.1 1276873 1277625 D hypothetical protein 1276873..1277625 Shewanella denitrificans OS217 4017656 YP_562125.1 CDS Sden_1114 NC_007954.1 1278498 1279679 D metal-binding protein 1278498..1279679 Shewanella denitrificans OS217 4017657 YP_562126.1 CDS metH NC_007954.1 1280183 1283908 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(1280183..1283908) Shewanella denitrificans OS217 4017658 YP_562127.1 CDS Sden_1116 NC_007954.1 1284405 1285328 D ABC transporter related 1284405..1285328 Shewanella denitrificans OS217 4017659 YP_562128.1 CDS Sden_1117 NC_007954.1 1285325 1286374 D transport system permease protein 1285325..1286374 Shewanella denitrificans OS217 4017660 YP_562129.1 CDS cobS NC_007954.1 1286601 1287389 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1286601..1287389 Shewanella denitrificans OS217 4017661 YP_562130.1 CDS Sden_1119 NC_007954.1 1287488 1288231 D cob(I)alamin adenosyltransferase 1287488..1288231 Shewanella denitrificans OS217 4017662 YP_562131.1 CDS Sden_1120 NC_007954.1 1288370 1289215 D hypothetical protein 1288370..1289215 Shewanella denitrificans OS217 4017402 YP_562132.1 CDS Sden_1121 NC_007954.1 1289460 1289762 D hypothetical protein 1289460..1289762 Shewanella denitrificans OS217 4017403 YP_562133.1 CDS Sden_1122 NC_007954.1 1289822 1290790 D beta-lactamase-like protein 1289822..1290790 Shewanella denitrificans OS217 4017404 YP_562134.1 CDS Sden_1123 NC_007954.1 1291292 1292341 D hypothetical protein 1291292..1292341 Shewanella denitrificans OS217 4017405 YP_562135.1 CDS Sden_1124 NC_007954.1 1292348 1293406 D hypothetical protein 1292348..1293406 Shewanella denitrificans OS217 4017406 YP_562136.1 CDS Sden_1125 NC_007954.1 1293640 1294059 D hypothetical protein 1293640..1294059 Shewanella denitrificans OS217 4017407 YP_562137.1 CDS Sden_1127 NC_007954.1 1294479 1295351 D transposase, IS4 1294479..1295351 Shewanella denitrificans OS217 4017409 YP_562138.1 CDS Sden_1128 NC_007954.1 1295384 1295602 D transposase 1295384..1295602 Shewanella denitrificans OS217 4017410 YP_562139.1 CDS Sden_1129 NC_007954.1 1295950 1297956 D hypothetical protein 1295950..1297956 Shewanella denitrificans OS217 4017411 YP_562140.1 CDS Sden_1130 NC_007954.1 1298217 1298867 D NADH dehydrogenase 1298217..1298867 Shewanella denitrificans OS217 4017412 YP_562141.1 CDS Sden_1131 NC_007954.1 1299208 1300167 R integron integrase complement(1299208..1300167) Shewanella denitrificans OS217 4017413 YP_562142.1 CDS Sden_1132 NC_007954.1 1300864 1301358 D transcription activator, effector binding 1300864..1301358 Shewanella denitrificans OS217 4017414 YP_562143.1 CDS Sden_1133 NC_007954.1 1301742 1302317 D Sel1 1301742..1302317 Shewanella denitrificans OS217 4017415 YP_562144.1 CDS Sden_1134 NC_007954.1 1303352 1304323 R transposase IS116/IS110/IS902 complement(1303352..1304323) Shewanella denitrificans OS217 4017416 YP_562145.1 CDS Sden_1135 NC_007954.1 1304644 1305207 D hypothetical protein 1304644..1305207 Shewanella denitrificans OS217 4017417 YP_562146.1 CDS Sden_1136 NC_007954.1 1305486 1306574 R transposase complement(1305486..1306574) Shewanella denitrificans OS217 4017418 YP_562147.1 CDS Sden_1137 NC_007954.1 1306571 1307461 R phage integrase complement(1306571..1307461) Shewanella denitrificans OS217 4017419 YP_562148.1 CDS Sden_1139 NC_007954.1 1309903 1310214 D glycine betaine/choline/proline transport system permease protein 1309903..1310214 Shewanella denitrificans OS217 4017312 YP_562149.1 CDS Sden_1140 NC_007954.1 1310211 1311062 D integrase catalytic subunit 1310211..1311062 Shewanella denitrificans OS217 4017313 YP_562150.1 CDS Sden_1141 NC_007954.1 1311455 1313122 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(1311455..1313122) Shewanella denitrificans OS217 4017314 YP_562151.1 CDS glyA NC_007954.1 1313312 1314565 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1313312..1314565 Shewanella denitrificans OS217 4017315 YP_562152.1 CDS nrdR NC_007954.1 1314679 1315128 D transcriptional regulator NrdR 1314679..1315128 Shewanella denitrificans OS217 4017316 YP_562153.1 CDS Sden_1144 NC_007954.1 1315261 1316397 D riboflavin biosynthesis protein RibD 1315261..1316397 Shewanella denitrificans OS217 4017317 YP_562154.1 CDS Sden_1145 NC_007954.1 1316500 1317153 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1316500..1317153 Shewanella denitrificans OS217 4017318 YP_562155.1 CDS Sden_1146 NC_007954.1 1317229 1318332 D 3,4-dihydroxy-2-butanone 4-phosphate synthase 1317229..1318332 Shewanella denitrificans OS217 4017319 YP_562156.1 CDS ribH NC_007954.1 1318454 1318933 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1318454..1318933 Shewanella denitrificans OS217 4017320 YP_562157.1 CDS nusB NC_007954.1 1318945 1319346 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1318945..1319346 Shewanella denitrificans OS217 4017321 YP_562158.1 CDS Sden_1149 NC_007954.1 1319444 1320400 D thiamine-monophosphate kinase 1319444..1320400 Shewanella denitrificans OS217 4017322 YP_562159.1 CDS Sden_1150 NC_007954.1 1320400 1320894 D phosphatidylglycerophosphatase 1320400..1320894 Shewanella denitrificans OS217 4017323 YP_562160.1 CDS Sden_1151 NC_007954.1 1321017 1322681 R recombination and repair protein complement(1321017..1322681) Shewanella denitrificans OS217 4017324 YP_562161.1 CDS Sden_1152 NC_007954.1 1323024 1323383 D hypothetical protein 1323024..1323383 Shewanella denitrificans OS217 4017325 YP_562162.1 CDS Sden_1153 NC_007954.1 1323527 1323982 D GCN5-related N-acetyltransferase 1323527..1323982 Shewanella denitrificans OS217 4017326 YP_562163.1 CDS Sden_1154 NC_007954.1 1324062 1324667 D hypothetical protein 1324062..1324667 Shewanella denitrificans OS217 4017327 YP_562164.1 CDS Sden_1155 NC_007954.1 1324799 1326775 R radical SAM family protein complement(1324799..1326775) Shewanella denitrificans OS217 4017328 YP_562165.1 CDS mtgA NC_007954.1 1326804 1327493 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(1326804..1327493) Shewanella denitrificans OS217 4017329 YP_562166.1 CDS Sden_1157 NC_007954.1 1327855 1328733 D hypothetical protein 1327855..1328733 Shewanella denitrificans OS217 4017330 YP_562167.1 CDS Sden_1158 NC_007954.1 1329582 1332611 D cation/multidrug efflux pump-like protein 1329582..1332611 Shewanella denitrificans OS217 4017331 YP_562168.1 CDS Sden_1159 NC_007954.1 1332611 1333375 D hypothetical protein 1332611..1333375 Shewanella denitrificans OS217 4017683 YP_562169.1 CDS Sden_1160 NC_007954.1 1334158 1335318 D hypothetical protein 1334158..1335318 Shewanella denitrificans OS217 4017684 YP_562170.1 CDS Sden_1161 NC_007954.1 1335400 1337037 D phosphoenolpyruvate phosphomutase 1335400..1337037 Shewanella denitrificans OS217 4017685 YP_562171.1 CDS Sden_1162 NC_007954.1 1337058 1338170 D thiamine pyrophosphate enzyme-like TPP-binding 1337058..1338170 Shewanella denitrificans OS217 4017686 YP_562172.1 CDS Sden_1163 NC_007954.1 1338179 1340407 D hypothetical protein 1338179..1340407 Shewanella denitrificans OS217 4017687 YP_562173.1 CDS Sden_1164 NC_007954.1 1340391 1341275 D sugar nucleotidyltransferases-like protein 1340391..1341275 Shewanella denitrificans OS217 4017688 YP_562174.1 CDS Sden_1165 NC_007954.1 1341272 1342363 D aminotransferase, class V 1341272..1342363 Shewanella denitrificans OS217 4017689 YP_562175.1 CDS Sden_1166 NC_007954.1 1342364 1343203 D aspartate/glutamate/uridylate kinase 1342364..1343203 Shewanella denitrificans OS217 4017690 YP_562176.1 CDS Sden_1167 NC_007954.1 1343197 1343850 D thymidylate kinase-like protein 1343197..1343850 Shewanella denitrificans OS217 4017691 YP_562177.1 CDS Sden_1168 NC_007954.1 1343878 1345578 D radical SAM family protein 1343878..1345578 Shewanella denitrificans OS217 4017692 YP_562178.1 CDS Sden_1169 NC_007954.1 1345630 1346403 D hypothetical protein 1345630..1346403 Shewanella denitrificans OS217 4017693 YP_562179.1 CDS Sden_1170 NC_007954.1 1346512 1347093 D pyridoxamine-phosphate oxidase 1346512..1347093 Shewanella denitrificans OS217 4017694 YP_562180.1 CDS Sden_1171 NC_007954.1 1347138 1348505 D beta-lactamase 1347138..1348505 Shewanella denitrificans OS217 4017695 YP_562181.1 CDS Sden_1172 NC_007954.1 1348575 1349699 D transposase, IS4 1348575..1349699 Shewanella denitrificans OS217 4017696 YP_562182.1 CDS Sden_1173 NC_007954.1 1350163 1351539 R sulfatase complement(1350163..1351539) Shewanella denitrificans OS217 4017697 YP_562183.1 CDS Sden_1174 NC_007954.1 1351545 1351940 R acetyltransferase complement(1351545..1351940) Shewanella denitrificans OS217 4017698 YP_562184.1 CDS Sden_1175 NC_007954.1 1351943 1352329 R hypothetical protein complement(1351943..1352329) Shewanella denitrificans OS217 4017699 YP_562185.1 CDS Sden_1176 NC_007954.1 1353044 1357909 D amino acid adenylation 1353044..1357909 Shewanella denitrificans OS217 4017700 YP_562186.1 CDS Sden_1177 NC_007954.1 1357906 1367319 D amino acid adenylation 1357906..1367319 Shewanella denitrificans OS217 4017701 YP_562187.1 CDS Sden_1178 NC_007954.1 1367737 1368765 D hypothetical protein 1367737..1368765 Shewanella denitrificans OS217 4017663 YP_562188.1 CDS Sden_1179 NC_007954.1 1368798 1368992 D ISSod2, transposase OrfA 1368798..1368992 Shewanella denitrificans OS217 4017664 YP_562189.1 CDS Sden_1180 NC_007954.1 1369113 1370225 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1369113..1370225 Shewanella denitrificans OS217 4017665 YP_562190.1 CDS Sden_1181 NC_007954.1 1370416 1370757 R hypothetical protein complement(1370416..1370757) Shewanella denitrificans OS217 4017666 YP_562191.1 CDS dnaK NC_007954.1 1371042 1372958 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1371042..1372958 Shewanella denitrificans OS217 4017667 YP_562192.1 CDS Sden_1183 NC_007954.1 1373084 1374217 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1373084..1374217 Shewanella denitrificans OS217 4017668 YP_562193.1 CDS Sden_1184 NC_007954.1 1374329 1375726 D DEAD/DEAH box helicase-like protein 1374329..1375726 Shewanella denitrificans OS217 4017669 YP_562194.1 CDS Sden_1185 NC_007954.1 1375800 1376876 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1375800..1376876 Shewanella denitrificans OS217 4017670 YP_562195.1 CDS Sden_1186 NC_007954.1 1377217 1377855 D transciptional regulator 1377217..1377855 Shewanella denitrificans OS217 4017671 YP_562196.1 CDS Sden_1187 NC_007954.1 1377983 1379329 R twin-arginine translocation pathway signal complement(1377983..1379329) Shewanella denitrificans OS217 4017672 YP_562197.1 CDS Sden_1188 NC_007954.1 1379362 1381299 R hypothetical protein complement(1379362..1381299) Shewanella denitrificans OS217 4017673 YP_562198.1 CDS Sden_1189 NC_007954.1 1381604 1382602 R auxin efflux carrier complement(1381604..1382602) Shewanella denitrificans OS217 4017674 YP_562199.1 CDS Sden_1190 NC_007954.1 1382702 1383298 R hypothetical protein complement(1382702..1383298) Shewanella denitrificans OS217 4017675 YP_562200.2 CDS Sden_1191 NC_007954.1 1383288 1386140 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1383288..1386140) Shewanella denitrificans OS217 4017676 YP_562201.1 CDS rumA NC_007954.1 1386242 1387648 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1386242..1387648 Shewanella denitrificans OS217 4017677 YP_562202.1 CDS Sden_1193 NC_007954.1 1387859 1390066 D RelA/SpoT family protein 1387859..1390066 Shewanella denitrificans OS217 4017678 YP_562203.1 CDS mazG NC_007954.1 1390092 1391009 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1390092..1391009 Shewanella denitrificans OS217 4017679 YP_562204.1 CDS pyrG NC_007954.1 1391127 1392764 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1391127..1392764 Shewanella denitrificans OS217 4017680 YP_562205.1 CDS eno NC_007954.1 1393022 1394317 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1393022..1394317 Shewanella denitrificans OS217 4017681 YP_562206.1 CDS Sden_1197 NC_007954.1 1394491 1394715 D septum formation initiator 1394491..1394715 Shewanella denitrificans OS217 4017682 YP_562207.1 CDS ispD NC_007954.1 1394750 1395475 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1394750..1395475 Shewanella denitrificans OS217 4017721 YP_562208.1 CDS ispF NC_007954.1 1395672 1396154 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1395672..1396154 Shewanella denitrificans OS217 4017722 YP_562209.1 CDS Sden_1200 NC_007954.1 1396169 1397257 D pseudouridylate synthase 1396169..1397257 Shewanella denitrificans OS217 4017723 YP_562210.1 CDS surE NC_007954.1 1397259 1398008 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1397259..1398008 Shewanella denitrificans OS217 4017724 YP_562211.1 CDS Sden_1202 NC_007954.1 1398005 1398640 D protein-L-isoaspartate O-methyltransferase 1398005..1398640 Shewanella denitrificans OS217 4017725 YP_562212.1 CDS Sden_1203 NC_007954.1 1398784 1399719 D peptidase M23B 1398784..1399719 Shewanella denitrificans OS217 4017726 YP_562213.1 CDS Sden_1204 NC_007954.1 1399796 1400779 D RNA polymerase sigma factor RpoS 1399796..1400779 Shewanella denitrificans OS217 4017727 YP_562214.1 CDS Sden_1205 NC_007954.1 1401078 1401965 D transposase, IS4 1401078..1401965 Shewanella denitrificans OS217 4017728 YP_562215.1 CDS Sden_1206 NC_007954.1 1403088 1403435 R hypothetical protein complement(1403088..1403435) Shewanella denitrificans OS217 4017729 YP_562216.1 CDS Sden_1207 NC_007954.1 1403468 1406056 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1403468..1406056) Shewanella denitrificans OS217 4017730 YP_562217.1 CDS recA NC_007954.1 1406529 1407590 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1406529..1407590 Shewanella denitrificans OS217 4017731 YP_562218.1 CDS Sden_1209 NC_007954.1 1407714 1408436 R LytTr DNA-binding region complement(1407714..1408436) Shewanella denitrificans OS217 4017732 YP_562219.1 CDS Sden_1210 NC_007954.1 1408500 1409555 R histidine kinase internal region complement(1408500..1409555) Shewanella denitrificans OS217 4017733 YP_562220.1 CDS Sden_1211 NC_007954.1 1409539 1410261 R hypothetical protein complement(1409539..1410261) Shewanella denitrificans OS217 4017734 YP_562221.1 CDS Sden_1212 NC_007954.1 1410474 1411508 D alpha/beta hydrolase fold 1410474..1411508 Shewanella denitrificans OS217 4017735 YP_562222.1 CDS alaS NC_007954.1 1411645 1414269 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1411645..1414269 Shewanella denitrificans OS217 4017736 YP_562223.1 CDS Sden_1214 NC_007954.1 1414612 1414809 D carbon storage regulator 1414612..1414809 Shewanella denitrificans OS217 4017737 YP_562224.1 CDS Sden_1215 NC_007954.1 1416231 1417703 D hypothetical protein 1416231..1417703 Shewanella denitrificans OS217 4017481 YP_562225.1 CDS Sden_1216 NC_007954.1 1417796 1419121 R sodium:dicarboxylate symporter complement(1417796..1419121) Shewanella denitrificans OS217 4017482 YP_562226.1 CDS Sden_1217 NC_007954.1 1419305 1419739 D hypothetical protein 1419305..1419739 Shewanella denitrificans OS217 4017483 YP_562227.1 CDS Sden_1218 NC_007954.1 1419812 1422736 D peptidase M16-like protein 1419812..1422736 Shewanella denitrificans OS217 4017484 YP_562228.1 CDS Sden_1219 NC_007954.1 1422934 1424508 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1422934..1424508 Shewanella denitrificans OS217 4017485 YP_562229.1 CDS Sden_1220 NC_007954.1 1424517 1424963 D hypothetical protein 1424517..1424963 Shewanella denitrificans OS217 4017486 YP_562230.1 CDS Sden_1221 NC_007954.1 1425110 1425796 D hypothetical protein 1425110..1425796 Shewanella denitrificans OS217 4017487 YP_562231.1 CDS Sden_1222 NC_007954.1 1425869 1427101 R GGDEF domain-containing protein complement(1425869..1427101) Shewanella denitrificans OS217 4017488 YP_562232.1 CDS Sden_1223 NC_007954.1 1427258 1428289 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1427258..1428289) Shewanella denitrificans OS217 4017489 YP_562233.1 CDS Sden_1224 NC_007954.1 1428343 1428834 R phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(1428343..1428834) Shewanella denitrificans OS217 4017273 YP_562234.1 CDS Sden_1225 NC_007954.1 1429177 1429614 R OsmC-like protein complement(1429177..1429614) Shewanella denitrificans OS217 4017274 YP_562235.1 CDS Sden_1226 NC_007954.1 1430304 1430660 D ribosomal subunit interface protein 1430304..1430660 Shewanella denitrificans OS217 4017275 YP_562236.1 CDS Sden_1227 NC_007954.1 1430810 1431532 R hypothetical protein complement(1430810..1431532) Shewanella denitrificans OS217 4017276 YP_562237.1 CDS Sden_1228 NC_007954.1 1431897 1432154 D hypothetical protein 1431897..1432154 Shewanella denitrificans OS217 4017277 YP_562238.1 CDS Sden_1229 NC_007954.1 1432247 1432954 R regulatory protein, TetR complement(1432247..1432954) Shewanella denitrificans OS217 4017278 YP_562239.1 CDS Sden_1230 NC_007954.1 1432953 1433996 D NADH:flavin oxidoreductase/NADH oxidase 1432953..1433996 Shewanella denitrificans OS217 4017279 YP_562240.1 CDS Sden_1231 NC_007954.1 1434327 1435334 D diacylglycerol kinase, catalytic region 1434327..1435334 Shewanella denitrificans OS217 4017280 YP_562241.1 CDS Sden_1232 NC_007954.1 1435459 1435650 D hypothetical protein 1435459..1435650 Shewanella denitrificans OS217 4017281 YP_562242.1 CDS Sden_1233 NC_007954.1 1435868 1436212 D alkylphosphonate utilization operon protein PhnA 1435868..1436212 Shewanella denitrificans OS217 4017282 YP_562243.1 CDS Sden_1234 NC_007954.1 1436850 1439339 D type III restriction enzyme, res subunit 1436850..1439339 Shewanella denitrificans OS217 4017283 YP_562244.1 CDS Sden_1235 NC_007954.1 1439454 1440959 D N-6 DNA methylase 1439454..1440959 Shewanella denitrificans OS217 4017284 YP_562245.1 CDS Sden_1236 NC_007954.1 1440952 1442046 D hypothetical protein 1440952..1442046 Shewanella denitrificans OS217 4017285 YP_562246.1 CDS Sden_1237 NC_007954.1 1442046 1443947 D restriction modification system DNA specificity subunit 1442046..1443947 Shewanella denitrificans OS217 4017286 YP_562247.1 CDS Sden_1238 NC_007954.1 1444021 1447557 D phospholipase D/transphosphatidylase 1444021..1447557 Shewanella denitrificans OS217 4017287 YP_562248.1 CDS smpB NC_007954.1 1448208 1448768 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1448208..1448768) Shewanella denitrificans OS217 4017289 YP_562249.1 CDS Sden_1240 NC_007954.1 1449010 1449447 D cyclase/dehydrase 1449010..1449447 Shewanella denitrificans OS217 4017290 YP_562250.1 CDS Sden_1241 NC_007954.1 1449437 1449772 D hypothetical protein 1449437..1449772 Shewanella denitrificans OS217 4017291 YP_562251.1 CDS Sden_1242 NC_007954.1 1449910 1450404 R SmpA/OmlA complement(1449910..1450404) Shewanella denitrificans OS217 4017457 YP_562252.1 CDS Sden_1243 NC_007954.1 1450776 1451627 D uroporphyrin-III C/tetrapyrrole methyltransferase 1450776..1451627 Shewanella denitrificans OS217 4017458 YP_562253.1 CDS Sden_1244 NC_007954.1 1451901 1453637 D GGDEF domain-containing protein 1451901..1453637 Shewanella denitrificans OS217 4017459 YP_562254.1 CDS Sden_1245 NC_007954.1 1454531 1456198 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1454531..1456198 Shewanella denitrificans OS217 4017460 YP_562255.1 CDS Sden_1246 NC_007954.1 1456275 1457600 D isocitrate lyase 1456275..1457600 Shewanella denitrificans OS217 4017461 YP_562256.1 CDS Sden_1247 NC_007954.1 1457862 1459331 D hypothetical protein 1457862..1459331 Shewanella denitrificans OS217 4017462 YP_562257.1 CDS Sden_1248 NC_007954.1 1459396 1459992 R hypothetical protein complement(1459396..1459992) Shewanella denitrificans OS217 4017463 YP_562258.1 CDS Sden_1249 NC_007954.1 1460070 1460894 R hypothetical protein complement(1460070..1460894) Shewanella denitrificans OS217 4017464 YP_562259.1 CDS Sden_1250 NC_007954.1 1460929 1461183 D hypothetical protein 1460929..1461183 Shewanella denitrificans OS217 4017465 YP_562260.1 CDS Sden_1251 NC_007954.1 1461228 1461785 R GCN5-related N-acetyltransferase complement(1461228..1461785) Shewanella denitrificans OS217 4017466 YP_562261.1 CDS Sden_1252 NC_007954.1 1461790 1463532 R 5'-nucleotidase-like protein complement(1461790..1463532) Shewanella denitrificans OS217 4017467 YP_562262.1 CDS Sden_1253 NC_007954.1 1463729 1464850 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1463729..1464850 Shewanella denitrificans OS217 4017468 YP_562263.1 CDS Sden_1254 NC_007954.1 1464886 1465668 D tetratricopeptide TPR_2 1464886..1465668 Shewanella denitrificans OS217 4017469 YP_562264.1 CDS Sden_1255 NC_007954.1 1465668 1466762 D hypothetical protein 1465668..1466762 Shewanella denitrificans OS217 4017470 YP_562265.1 CDS ispG NC_007954.1 1466827 1467942 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1466827..1467942 Shewanella denitrificans OS217 4017471 YP_562266.1 CDS hisS NC_007954.1 1468022 1469296 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1468022..1469296 Shewanella denitrificans OS217 4017472 YP_562267.1 CDS Sden_1258 NC_007954.1 1469310 1469930 D tetratricopeptide TPR_2 1469310..1469930 Shewanella denitrificans OS217 4017473 YP_562268.1 CDS Sden_1259 NC_007954.1 1469941 1471128 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1469941..1471128 Shewanella denitrificans OS217 4017474 YP_562269.1 CDS engA NC_007954.1 1471210 1472685 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1471210..1472685 Shewanella denitrificans OS217 4017475 YP_562270.1 CDS Sden_1261 NC_007954.1 1472798 1473013 D hypothetical protein 1472798..1473013 Shewanella denitrificans OS217 4017529 YP_562271.1 CDS Sden_1262 NC_007954.1 1473072 1474532 R hypothetical protein complement(1473072..1474532) Shewanella denitrificans OS217 4017530 YP_562272.1 CDS Sden_1263 NC_007954.1 1474620 1476044 R ATP-binding region, ATPase-like protein complement(1474620..1476044) Shewanella denitrificans OS217 4017531 YP_562273.1 CDS Sden_1264 NC_007954.1 1476034 1476765 R response regulator receiver complement(1476034..1476765) Shewanella denitrificans OS217 4017532 YP_562274.1 CDS Sden_1265 NC_007954.1 1476903 1477244 R peptidase complement(1476903..1477244) Shewanella denitrificans OS217 4017533 YP_562275.1 CDS Sden_1266 NC_007954.1 1477553 1478704 D hypothetical protein 1477553..1478704 Shewanella denitrificans OS217 4017534 YP_562276.1 CDS Sden_1267 NC_007954.1 1478897 1479568 D OmpA/MotB 1478897..1479568 Shewanella denitrificans OS217 4017535 YP_562277.1 CDS xseA NC_007954.1 1479711 1481051 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1479711..1481051) Shewanella denitrificans OS217 4017536 YP_562278.1 CDS Sden_1269 NC_007954.1 1481172 1482638 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1481172..1482638 Shewanella denitrificans OS217 4017537 YP_562279.1 CDS guaA NC_007954.1 1482739 1484316 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1482739..1484316 Shewanella denitrificans OS217 4017538 YP_562280.1 CDS Sden_1271 NC_007954.1 1484445 1484978 D CMP/dCMP deaminase, zinc-binding 1484445..1484978 Shewanella denitrificans OS217 4017539 YP_562281.1 CDS Sden_1272 NC_007954.1 1485406 1486890 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase complement(1485406..1486890) Shewanella denitrificans OS217 4017540 YP_562282.1 CDS Sden_1273 NC_007954.1 1487218 1491099 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1487218..1491099 Shewanella denitrificans OS217 4017541 YP_562283.1 CDS Sden_1274 NC_007954.1 1491371 1492936 D cytochrome bd ubiquinol oxidase, subunit I 1491371..1492936 Shewanella denitrificans OS217 4017542 YP_562284.1 CDS Sden_1275 NC_007954.1 1492929 1494068 D cytochrome d ubiquinol oxidase, subunit II 1492929..1494068 Shewanella denitrificans OS217 4017543 YP_562285.1 CDS Sden_1276 NC_007954.1 1494095 1494214 D Cyd operon protein YbgT 1494095..1494214 Shewanella denitrificans OS217 4017544 YP_562286.1 CDS Sden_1277 NC_007954.1 1494291 1497362 R acriflavin resistance protein complement(1494291..1497362) Shewanella denitrificans OS217 4017545 YP_562287.1 CDS Sden_1278 NC_007954.1 1497359 1498471 R secretion protein HlyD complement(1497359..1498471) Shewanella denitrificans OS217 4017546 YP_562288.1 CDS Sden_1279 NC_007954.1 1498681 1499301 D regulatory protein, TetR 1498681..1499301 Shewanella denitrificans OS217 4017547 YP_562289.1 CDS Sden_1280 NC_007954.1 1499472 1500431 D hypothetical protein 1499472..1500431 Shewanella denitrificans OS217 4017548 YP_562290.1 CDS Sden_1281 NC_007954.1 1500482 1501069 R hypothetical protein complement(1500482..1501069) Shewanella denitrificans OS217 4017568 YP_562291.1 CDS Sden_1282 NC_007954.1 1501138 1501617 R hypothetical protein complement(1501138..1501617) Shewanella denitrificans OS217 4017569 YP_562292.1 CDS Sden_1283 NC_007954.1 1501937 1502968 D polysaccharide biosynthesis protein 1501937..1502968 Shewanella denitrificans OS217 4017570 YP_562293.1 CDS Sden_1284 NC_007954.1 1502961 1503917 D MaoC-like dehydratase 1502961..1503917 Shewanella denitrificans OS217 4017571 YP_562294.1 CDS Sden_1285 NC_007954.1 1504115 1506589 R hypothetical protein complement(1504115..1506589) Shewanella denitrificans OS217 4017572 YP_562295.1 CDS Sden_1286 NC_007954.1 1507007 1508002 D polysaccharide biosynthesis protein CapD 1507007..1508002 Shewanella denitrificans OS217 4017573 YP_562296.1 CDS Sden_1287 NC_007954.1 1507999 1509144 D DegT/DnrJ/EryC1/StrS aminotransferase 1507999..1509144 Shewanella denitrificans OS217 4017574 YP_562297.1 CDS Sden_1288 NC_007954.1 1509144 1509842 D acylneuraminate cytidylyltransferase 1509144..1509842 Shewanella denitrificans OS217 4017575 YP_562298.1 CDS Sden_1289 NC_007954.1 1509920 1510972 D N-acylneuraminate-9-phosphate synthase 1509920..1510972 Shewanella denitrificans OS217 4017576 YP_562299.1 CDS Sden_1290 NC_007954.1 1510985 1512352 D FAD dependent oxidoreductase 1510985..1512352 Shewanella denitrificans OS217 4017577 YP_562300.1 CDS Sden_1291 NC_007954.1 1512361 1513344 D spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein 1512361..1513344 Shewanella denitrificans OS217 4017578 YP_562301.1 CDS Sden_1292 NC_007954.1 1513395 1514024 D methyltransferase type 12 1513395..1514024 Shewanella denitrificans OS217 4017579 YP_562302.1 CDS Sden_1293 NC_007954.1 1514036 1514761 D hypothetical protein 1514036..1514761 Shewanella denitrificans OS217 4017580 YP_562303.1 CDS Sden_1294 NC_007954.1 1514844 1515908 D hypothetical protein 1514844..1515908 Shewanella denitrificans OS217 4017581 YP_562304.1 CDS Sden_1295 NC_007954.1 1516646 1517860 R hypothetical protein complement(1516646..1517860) Shewanella denitrificans OS217 4017583 YP_562305.1 CDS Sden_1296 NC_007954.1 1518404 1519117 D hypothetical protein 1518404..1519117 Shewanella denitrificans OS217 4017584 YP_562306.1 CDS Sden_1297 NC_007954.1 1519120 1519566 D hypothetical protein 1519120..1519566 Shewanella denitrificans OS217 4017585 YP_562307.1 CDS Sden_1298 NC_007954.1 1519638 1520063 R FlgN complement(1519638..1520063) Shewanella denitrificans OS217 4017292 YP_562308.1 CDS Sden_1299 NC_007954.1 1520170 1520493 R anti-sigma-28 factor, FlgM complement(1520170..1520493) Shewanella denitrificans OS217 4017293 YP_562309.1 CDS flgA NC_007954.1 1520567 1521274 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1520567..1521274) Shewanella denitrificans OS217 4017294 YP_562310.1 CDS Sden_1301 NC_007954.1 1521629 1522549 D CheW-like protein 1521629..1522549 Shewanella denitrificans OS217 4017295 YP_562311.1 CDS Sden_1302 NC_007954.1 1522679 1523518 D protein-glutamate O-methyltransferase 1522679..1523518 Shewanella denitrificans OS217 4017296 YP_562312.1 CDS flgB NC_007954.1 1523674 1524072 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1523674..1524072 Shewanella denitrificans OS217 4017297 YP_562313.1 CDS flgC NC_007954.1 1524075 1524491 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1524075..1524491 Shewanella denitrificans OS217 4017298 YP_562314.1 CDS flgD NC_007954.1 1524516 1525307 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1524516..1525307 Shewanella denitrificans OS217 4017299 YP_562315.1 CDS flgE NC_007954.1 1525388 1526755 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1525388..1526755 Shewanella denitrificans OS217 4017300 YP_562316.1 CDS flgF NC_007954.1 1526951 1527694 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1526951..1527694 Shewanella denitrificans OS217 4017301 YP_562317.1 CDS flgG NC_007954.1 1527706 1528494 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1527706..1528494 Shewanella denitrificans OS217 4017302 YP_562318.1 CDS flgH NC_007954.1 1528505 1529179 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1528505..1529179 Shewanella denitrificans OS217 4017303 YP_562319.1 CDS flgI NC_007954.1 1529191 1530291 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1529191..1530291 Shewanella denitrificans OS217 4017304 YP_562320.1 CDS flgJ NC_007954.1 1530309 1531412 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1530309..1531412 Shewanella denitrificans OS217 4017305 YP_562321.1 CDS Sden_1312 NC_007954.1 1531412 1533331 D flagellar hook-associated protein 1531412..1533331 Shewanella denitrificans OS217 4017306 YP_562322.1 CDS flgL NC_007954.1 1533344 1534546 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1533344..1534546 Shewanella denitrificans OS217 4017307 YP_562323.1 CDS Sden_1314 NC_007954.1 1534637 1535458 D flagellin-like protein 1534637..1535458 Shewanella denitrificans OS217 4017308 YP_562324.1 CDS Sden_1315 NC_007954.1 1536030 1536848 D flagellin-like protein 1536030..1536848 Shewanella denitrificans OS217 4017309 YP_562325.1 CDS Sden_1316 NC_007954.1 1537047 1537460 D flagellar protein FlaG protein 1537047..1537460 Shewanella denitrificans OS217 4017310 YP_562326.1 CDS Sden_1317 NC_007954.1 1537567 1538931 D flagellar hook-associated 2-like protein 1537567..1538931 Shewanella denitrificans OS217 4017311 YP_562327.1 CDS Sden_1318 NC_007954.1 1538960 1539295 D hypothetical protein 1538960..1539295 Shewanella denitrificans OS217 4017490 YP_562328.1 CDS fliS NC_007954.1 1539302 1539712 D flagellin specific chaperone; flagellar protein FliS 1539302..1539712 Shewanella denitrificans OS217 4017491 YP_562329.1 CDS Sden_1320 NC_007954.1 1540104 1541537 D sigma-54 factor, interaction region 1540104..1541537 Shewanella denitrificans OS217 4017492 YP_562330.1 CDS Sden_1321 NC_007954.1 1541799 1542869 D ATP-binding region, ATPase-like protein 1541799..1542869 Shewanella denitrificans OS217 4017493 YP_562331.1 CDS Sden_1322 NC_007954.1 1542862 1544202 D sigma-54 factor, interaction region 1542862..1544202 Shewanella denitrificans OS217 4017494 YP_562332.1 CDS Sden_1323 NC_007954.1 1544489 1544830 D flagellar hook-basal body complex protein (FliE) 1544489..1544830 Shewanella denitrificans OS217 4017495 YP_562333.1 CDS fliF NC_007954.1 1544863 1546563 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1544863..1546563 Shewanella denitrificans OS217 4017496 YP_562334.1 CDS fliG NC_007954.1 1546550 1547596 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1546550..1547596 Shewanella denitrificans OS217 4017497 YP_562335.1 CDS fliH NC_007954.1 1547661 1548788 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1547661..1548788 Shewanella denitrificans OS217 4017498 YP_562336.1 CDS fliI NC_007954.1 1548757 1550097 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1548757..1550097 Shewanella denitrificans OS217 4017499 YP_562337.1 CDS Sden_1328 NC_007954.1 1550169 1550615 D flagellar export FliJ 1550169..1550615 Shewanella denitrificans OS217 4017500 YP_562338.1 CDS Sden_1329 NC_007954.1 1550778 1552265 D flagellar hook-length control protein 1550778..1552265 Shewanella denitrificans OS217 4017501 YP_562339.2 CDS fliL NC_007954.1 1552408 1552929 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1552408..1552929 Shewanella denitrificans OS217 4017502 YP_562340.1 CDS Sden_1331 NC_007954.1 1552973 1553545 D flagellar motor switch protein FliM 1552973..1553545 Shewanella denitrificans OS217 4017503 YP_562341.1 CDS Sden_1332 NC_007954.1 1553575 1554591 D transposase IS116/IS110/IS902 1553575..1554591 Shewanella denitrificans OS217 4017504 YP_562342.1 CDS Sden_1333 NC_007954.1 1554835 1555380 D surface presentation of antigens (SPOA) protein 1554835..1555380 Shewanella denitrificans OS217 4017505 YP_562343.1 CDS fliN NC_007954.1 1555390 1555773 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1555390..1555773 Shewanella denitrificans OS217 4017506 YP_562344.1 CDS Sden_1335 NC_007954.1 1555869 1556270 D flagellar biosynthesis protein, FliO 1555869..1556270 Shewanella denitrificans OS217 4017507 YP_562345.1 CDS fliP NC_007954.1 1556270 1557013 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1556270..1557013 Shewanella denitrificans OS217 4017508 YP_562346.1 CDS Sden_1337 NC_007954.1 1557025 1557294 D flagellar biosynthetic protein FliQ 1557025..1557294 Shewanella denitrificans OS217 4017623 YP_562347.1 CDS fliR NC_007954.1 1557298 1558101 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1557298..1558101 Shewanella denitrificans OS217 4017624 YP_562348.1 CDS flhB NC_007954.1 1558159 1559292 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1558159..1559292 Shewanella denitrificans OS217 4017625 YP_562349.1 CDS flhA NC_007954.1 1559392 1561491 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1559392..1561491 Shewanella denitrificans OS217 4017626 YP_562350.1 CDS flhF NC_007954.1 1561521 1562909 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1561521..1562909 Shewanella denitrificans OS217 4017627 YP_562351.1 CDS Sden_1342 NC_007954.1 1562884 1563795 D cobyrinic acid a,c-diamide synthase 1562884..1563795 Shewanella denitrificans OS217 4017628 YP_562352.1 CDS fliA NC_007954.1 1563788 1564507 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1563788..1564507 Shewanella denitrificans OS217 4017629 YP_562353.1 CDS Sden_1344 NC_007954.1 1564551 1564934 D response regulator receiver 1564551..1564934 Shewanella denitrificans OS217 4017630 YP_562354.1 CDS Sden_1345 NC_007954.1 1564949 1565686 D chemotaxis phosphatase, CheZ 1564949..1565686 Shewanella denitrificans OS217 4017631 YP_562355.1 CDS Sden_1346 NC_007954.1 1565702 1567906 D ATP-binding region, ATPase-like protein 1565702..1567906 Shewanella denitrificans OS217 4017632 YP_562356.1 CDS Sden_1347 NC_007954.1 1567932 1569098 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1567932..1569098 Shewanella denitrificans OS217 4017633 YP_562357.1 CDS Sden_1348 NC_007954.1 1569103 1569522 D hypothetical protein 1569103..1569522 Shewanella denitrificans OS217 4017634 YP_562358.1 CDS Sden_1349 NC_007954.1 1569553 1570344 D cobyrinic acid a,c-diamide synthase 1569553..1570344 Shewanella denitrificans OS217 4017635 YP_562359.1 CDS Sden_1350 NC_007954.1 1570328 1571359 D CheW-like protein 1570328..1571359 Shewanella denitrificans OS217 4017636 YP_562360.1 CDS Sden_1351 NC_007954.1 1571362 1571856 D CheW-like protein 1571362..1571856 Shewanella denitrificans OS217 4017637 YP_562361.1 CDS Sden_1352 NC_007954.1 1571953 1572351 D hypothetical protein 1571953..1572351 Shewanella denitrificans OS217 4017638 YP_562362.1 CDS Sden_1353 NC_007954.1 1572451 1572750 R FlhB domain-containing protein complement(1572451..1572750) Shewanella denitrificans OS217 4017639 YP_562363.1 CDS Sden_1354 NC_007954.1 1572763 1574595 R hypothetical protein complement(1572763..1574595) Shewanella denitrificans OS217 4017640 YP_562364.1 CDS Sden_1355 NC_007954.1 1574964 1575734 D VacJ-like lipoprotein 1574964..1575734 Shewanella denitrificans OS217 4017641 YP_562365.1 CDS Sden_1356 NC_007954.1 1575787 1576947 D response regulator receiver 1575787..1576947 Shewanella denitrificans OS217 4017642 YP_562366.1 CDS Sden_1357 NC_007954.1 1577048 1578517 R amino acid/peptide transporter complement(1577048..1578517) Shewanella denitrificans OS217 4017604 YP_562367.1 CDS Sden_1358 NC_007954.1 1578944 1579573 D OmpA/MotB 1578944..1579573 Shewanella denitrificans OS217 4017605 YP_562368.1 CDS Sden_1359 NC_007954.1 1579594 1580421 D MscS mechanosensitive ion channel 1579594..1580421 Shewanella denitrificans OS217 4017606 YP_562369.1 CDS Sden_1360 NC_007954.1 1580418 1581032 D antioxidant Tpx 1580418..1581032 Shewanella denitrificans OS217 4017607 YP_562370.1 CDS Sden_1361 NC_007954.1 1581140 1582168 D threonine aldolase 1581140..1582168 Shewanella denitrificans OS217 4017608 YP_562371.1 CDS Sden_1362 NC_007954.1 1582533 1584554 D choline/carnitine/betaine transport 1582533..1584554 Shewanella denitrificans OS217 4017609 YP_562372.1 CDS Sden_1363 NC_007954.1 1584681 1585043 D hypothetical protein 1584681..1585043 Shewanella denitrificans OS217 4017610 YP_562373.1 CDS Sden_1364 NC_007954.1 1585135 1586097 R hypothetical protein complement(1585135..1586097) Shewanella denitrificans OS217 4017611 YP_562374.1 CDS Sden_1365 NC_007954.1 1586674 1588377 D ATP-binding region, ATPase-like protein 1586674..1588377 Shewanella denitrificans OS217 4017612 YP_562375.1 CDS Sden_1366 NC_007954.1 1588374 1589783 D sigma-54 factor, interaction region 1588374..1589783 Shewanella denitrificans OS217 4017613 YP_562376.1 CDS Sden_1367 NC_007954.1 1589802 1590026 R hypothetical protein complement(1589802..1590026) Shewanella denitrificans OS217 4017614 YP_562377.1 CDS Sden_1368 NC_007954.1 1590119 1591525 D hypothetical protein 1590119..1591525 Shewanella denitrificans OS217 4017615 YP_562378.1 CDS Sden_1369 NC_007954.1 1591836 1592885 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1591836..1592885 Shewanella denitrificans OS217 4017616 YP_562379.1 CDS Sden_1370 NC_007954.1 1593033 1593926 D alpha/beta hydrolase 1593033..1593926 Shewanella denitrificans OS217 4017617 YP_562380.1 CDS Sden_1371 NC_007954.1 1594053 1595768 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1594053..1595768 Shewanella denitrificans OS217 4017618 YP_562381.1 CDS Sden_1372 NC_007954.1 1595756 1596886 D 3-beta hydroxysteroid dehydrogenase/isomerase 1595756..1596886 Shewanella denitrificans OS217 4017619 YP_562382.1 CDS Sden_1373 NC_007954.1 1596942 1597622 R methyltransferase type 12 complement(1596942..1597622) Shewanella denitrificans OS217 4017620 YP_562383.1 CDS Sden_1374 NC_007954.1 1597765 1598214 D glutathione-dependent formaldehyde-activating, GFA 1597765..1598214 Shewanella denitrificans OS217 4017621 YP_562384.1 CDS Sden_1375 NC_007954.1 1598279 1598980 D aspartate racemase 1598279..1598980 Shewanella denitrificans OS217 4017622 YP_562385.1 CDS Sden_1376 NC_007954.1 1599005 1600837 R thiamine pyrophosphate enzyme-like TPP binding region complement(1599005..1600837) Shewanella denitrificans OS217 4017739 YP_562386.1 CDS Sden_1377 NC_007954.1 1601194 1601556 D glyoxalase/bleomycin resistance protein/dioxygenase 1601194..1601556 Shewanella denitrificans OS217 4017740 YP_562387.1 CDS Sden_1378 NC_007954.1 1601602 1602015 D GCN5-related N-acetyltransferase 1601602..1602015 Shewanella denitrificans OS217 4017741 YP_562388.1 CDS Sden_1379 NC_007954.1 1602058 1602456 D glutathione-dependent formaldehyde-activating, GFA 1602058..1602456 Shewanella denitrificans OS217 4017742 YP_562389.1 CDS Sden_1380 NC_007954.1 1602735 1603835 D peptidyl-Lys metalloendopeptidase 1602735..1603835 Shewanella denitrificans OS217 4017743 YP_562390.1 CDS Sden_1381 NC_007954.1 1604034 1605119 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(1604034..1605119) Shewanella denitrificans OS217 4017744 YP_562391.1 CDS Sden_1382 NC_007954.1 1605201 1605884 R GntR family transcriptional regulator complement(1605201..1605884) Shewanella denitrificans OS217 4017745 YP_562392.1 CDS Sden_1383 NC_007954.1 1606037 1606594 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1606037..1606594 Shewanella denitrificans OS217 4017746 YP_562393.1 CDS Sden_1384 NC_007954.1 1613441 1615603 D catalase/peroxidase HPI 1613441..1615603 Shewanella denitrificans OS217 4017752 YP_562394.1 CDS Sden_1385 NC_007954.1 1615692 1616309 R glutathione S-transferase-like protein complement(1615692..1616309) Shewanella denitrificans OS217 4017753 YP_562395.1 CDS Sden_1386 NC_007954.1 1616459 1617139 R ThiJ/PfpI complement(1616459..1617139) Shewanella denitrificans OS217 4017349 YP_562396.1 CDS Sden_1387 NC_007954.1 1617224 1618249 R zinc-binding alcohol dehydrogenase complement(1617224..1618249) Shewanella denitrificans OS217 4017350 YP_562397.1 CDS Sden_1388 NC_007954.1 1618428 1619018 R regulatory protein, TetR complement(1618428..1619018) Shewanella denitrificans OS217 4017351 YP_562398.1 CDS Sden_1389 NC_007954.1 1619279 1621945 D GGDEF domain-containing protein 1619279..1621945 Shewanella denitrificans OS217 4017352 YP_562399.1 CDS Sden_1390 NC_007954.1 1622167 1622565 D 4-hydroxybenzoyl-CoA thioesterase 1622167..1622565 Shewanella denitrificans OS217 4017353 YP_562400.1 CDS Sden_1391 NC_007954.1 1622555 1623244 D MotA/TolQ/ExbB proton channel 1622555..1623244 Shewanella denitrificans OS217 4017354 YP_562401.1 CDS Sden_1392 NC_007954.1 1623244 1623672 D biopolymer transport protein ExbD/TolR 1623244..1623672 Shewanella denitrificans OS217 4017355 YP_562402.1 CDS Sden_1393 NC_007954.1 1623673 1624659 D hypothetical protein 1623673..1624659 Shewanella denitrificans OS217 4017356 YP_562403.1 CDS tolB NC_007954.1 1624669 1625997 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1624669..1625997 Shewanella denitrificans OS217 4017357 YP_562404.1 CDS Sden_1395 NC_007954.1 1626021 1626557 D OmpA/MotB 1626021..1626557 Shewanella denitrificans OS217 4017358 YP_562405.1 CDS Sden_1396 NC_007954.1 1626618 1627403 D tetratricopeptide TPR_2 1626618..1627403 Shewanella denitrificans OS217 4017359 YP_562406.1 CDS Sden_1397 NC_007954.1 1629376 1630056 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1629376..1630056) Shewanella denitrificans OS217 4017334 YP_562407.1 CDS Sden_1398 NC_007954.1 1630206 1631075 D OmpA/MotB 1630206..1631075 Shewanella denitrificans OS217 4017335 YP_562408.1 CDS Sden_1399 NC_007954.1 1631687 1632289 R hypothetical protein complement(1631687..1632289) Shewanella denitrificans OS217 4017336 YP_562409.1 CDS queA NC_007954.1 1632610 1633650 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1632610..1633650 Shewanella denitrificans OS217 4017337 YP_562410.1 CDS tgt NC_007954.1 1633803 1634936 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1633803..1634936 Shewanella denitrificans OS217 4017338 YP_562411.1 CDS yajC NC_007954.1 1635013 1635288 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1635013..1635288 Shewanella denitrificans OS217 4017339 YP_562412.1 CDS secD NC_007954.1 1635306 1637156 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1635306..1637156 Shewanella denitrificans OS217 4017340 YP_562413.1 CDS secF NC_007954.1 1637169 1638116 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1637169..1638116 Shewanella denitrificans OS217 4017341 YP_562414.1 CDS Sden_1405 NC_007954.1 1638291 1638608 D hypothetical protein 1638291..1638608 Shewanella denitrificans OS217 4017342 YP_562415.1 CDS Sden_1406 NC_007954.1 1638641 1639000 D rhodanese-like protein 1638641..1639000 Shewanella denitrificans OS217 4017343 YP_562416.1 CDS Sden_1407 NC_007954.1 1639087 1640010 D siroheme synthase 1639087..1640010 Shewanella denitrificans OS217 4017344 YP_562417.1 CDS Sden_1408 NC_007954.1 1640154 1640693 D YaeQ 1640154..1640693 Shewanella denitrificans OS217 4017345 YP_562418.1 CDS Sden_1409 NC_007954.1 1640820 1643231 R peptidase S8/S53 subtilisin kexin sedolisin complement(1640820..1643231) Shewanella denitrificans OS217 4017346 YP_562419.1 CDS Sden_1410 NC_007954.1 1644043 1644453 R rhodanese-like protein complement(1644043..1644453) Shewanella denitrificans OS217 4017347 YP_562420.1 CDS Sden_1411 NC_007954.1 1644463 1644729 R hypothetical protein complement(1644463..1644729) Shewanella denitrificans OS217 4017348 YP_562421.1 CDS Sden_1412 NC_007954.1 1644784 1648044 R acriflavin resistance protein complement(1644784..1648044) Shewanella denitrificans OS217 4017437 YP_562422.1 CDS Sden_1413 NC_007954.1 1648044 1649186 R secretion protein HlyD complement(1648044..1649186) Shewanella denitrificans OS217 4017438 YP_562423.1 CDS Sden_1414 NC_007954.1 1649510 1650841 R aromatic hydrocarbon degradation membrane protein complement(1649510..1650841) Shewanella denitrificans OS217 4017439 YP_562424.1 CDS Sden_1415 NC_007954.1 1651345 1651845 R hypothetical protein complement(1651345..1651845) Shewanella denitrificans OS217 4017440 YP_562425.1 CDS Sden_1416 NC_007954.1 1652141 1652578 R hypothetical protein complement(1652141..1652578) Shewanella denitrificans OS217 4017441 YP_562426.1 CDS Sden_1417 NC_007954.1 1652634 1654040 R DEAD/DEAH box helicase-like protein complement(1652634..1654040) Shewanella denitrificans OS217 4017442 YP_562427.1 CDS Sden_1418 NC_007954.1 1654172 1655173 D patatin 1654172..1655173 Shewanella denitrificans OS217 4017443 YP_562428.1 CDS Sden_1419 NC_007954.1 1655508 1657622 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1655508..1657622 Shewanella denitrificans OS217 4017444 YP_562429.1 CDS nrdG NC_007954.1 1657651 1658124 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1657651..1658124 Shewanella denitrificans OS217 4017445 YP_562430.1 CDS Sden_1421 NC_007954.1 1658274 1658837 D NADPH-dependent FMN reductase 1658274..1658837 Shewanella denitrificans OS217 4017446 YP_562431.1 CDS Sden_1422 NC_007954.1 1659020 1659454 D hypothetical protein 1659020..1659454 Shewanella denitrificans OS217 4017447 YP_562432.1 CDS Sden_1423 NC_007954.1 1659470 1660159 R hypothetical protein complement(1659470..1660159) Shewanella denitrificans OS217 4017448 YP_562433.1 CDS Sden_1424 NC_007954.1 1660404 1660901 D hypothetical protein 1660404..1660901 Shewanella denitrificans OS217 4017449 YP_562434.1 CDS Sden_1425 NC_007954.1 1661004 1661213 D transciptional regulator 1661004..1661213 Shewanella denitrificans OS217 4017450 YP_562435.1 CDS Sden_1426 NC_007954.1 1661210 1661992 R hypothetical protein complement(1661210..1661992) Shewanella denitrificans OS217 4017451 YP_562436.1 CDS recR NC_007954.1 1662243 1662842 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1662243..1662842 Shewanella denitrificans OS217 4017452 YP_562437.1 CDS Sden_1428 NC_007954.1 1663086 1664999 D molecular chaperone; heat shock protein 90 1663086..1664999 Shewanella denitrificans OS217 4017453 YP_562438.1 CDS Sden_1429 NC_007954.1 1665089 1665952 D thioredoxin-related 1665089..1665952 Shewanella denitrificans OS217 4017454 YP_562439.1 CDS adk NC_007954.1 1666077 1666721 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1666077..1666721 Shewanella denitrificans OS217 4017455 YP_562440.1 CDS Sden_1431 NC_007954.1 1667053 1668357 D inosine kinase 1667053..1668357 Shewanella denitrificans OS217 4017456 YP_562441.1 CDS nadE NC_007954.1 1668470 1669297 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1668470..1669297 Shewanella denitrificans OS217 4017421 YP_562442.1 CDS Sden_1433 NC_007954.1 1669303 1669968 R hypothetical protein complement(1669303..1669968) Shewanella denitrificans OS217 4017422 YP_562443.1 CDS Sden_1434 NC_007954.1 1670114 1671670 D hypothetical protein 1670114..1671670 Shewanella denitrificans OS217 4017423 YP_562444.1 CDS Sden_1435 NC_007954.1 1671783 1673984 R GGDEF domain-containing protein complement(1671783..1673984) Shewanella denitrificans OS217 4017424 YP_562445.1 CDS Sden_1436 NC_007954.1 1674341 1674985 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1674341..1674985 Shewanella denitrificans OS217 4017425 YP_562446.1 CDS uvrC NC_007954.1 1675025 1676854 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1675025..1676854 Shewanella denitrificans OS217 4017426 YP_562447.1 CDS Sden_1438 NC_007954.1 1676900 1677448 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1676900..1677448 Shewanella denitrificans OS217 4017427 YP_562448.1 CDS Sden_1439 NC_007954.1 1678560 1679009 D GCN5-related N-acetyltransferase 1678560..1679009 Shewanella denitrificans OS217 4017431 YP_562449.1 CDS Sden_1440 NC_007954.1 1679496 1680125 D helix-turn-helix, AraC type 1679496..1680125 Shewanella denitrificans OS217 4017432 YP_562450.1 CDS Sden_1441 NC_007954.1 1680133 1681071 D hypothetical protein 1680133..1681071 Shewanella denitrificans OS217 4017433 YP_562451.1 CDS Sden_1442 NC_007954.1 1681231 1681629 D NADPH-dependent FMN reductase 1681231..1681629 Shewanella denitrificans OS217 4017434 YP_562452.1 CDS Sden_1443 NC_007954.1 1681744 1682136 D glyoxalase/bleomycin resistance protein/dioxygenase 1681744..1682136 Shewanella denitrificans OS217 4017435 YP_562453.1 CDS Sden_1445 NC_007954.1 1682820 1685297 R TonB-dependent receptor, plug complement(1682820..1685297) Shewanella denitrificans OS217 4017754 YP_562454.1 CDS Sden_1446 NC_007954.1 1685578 1685934 D hypothetical protein 1685578..1685934 Shewanella denitrificans OS217 4017755 YP_562455.1 CDS ribA NC_007954.1 1686025 1686642 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1686025..1686642 Shewanella denitrificans OS217 4017756 YP_562456.1 CDS Sden_1448 NC_007954.1 1686668 1687519 D hypothetical protein 1686668..1687519 Shewanella denitrificans OS217 4017757 YP_562457.1 CDS Sden_1449 NC_007954.1 1687579 1687983 R hypothetical protein complement(1687579..1687983) Shewanella denitrificans OS217 4017758 YP_562458.1 CDS Sden_1450 NC_007954.1 1688049 1688381 R RepA domain-containing protein complement(1688049..1688381) Shewanella denitrificans OS217 4017759 YP_562459.1 CDS Sden_1451 NC_007954.1 1688368 1689042 R hypothetical protein complement(1688368..1689042) Shewanella denitrificans OS217 4017760 YP_562460.1 CDS Sden_1452 NC_007954.1 1689123 1689428 R hypothetical protein complement(1689123..1689428) Shewanella denitrificans OS217 4017761 YP_562461.1 CDS Sden_1453 NC_007954.1 1689553 1689957 R phosphate-starvation-inducible E complement(1689553..1689957) Shewanella denitrificans OS217 4017762 YP_562462.1 CDS Sden_1454 NC_007954.1 1690071 1690874 R inositol monophosphatase complement(1690071..1690874) Shewanella denitrificans OS217 4017763 YP_562463.1 CDS Sden_1455 NC_007954.1 1691036 1691815 D RNA methyltransferase TrmH, group 1 1691036..1691815 Shewanella denitrificans OS217 4017764 YP_562464.1 CDS Sden_1456 NC_007954.1 1691833 1692654 D serine O-acetyltransferase 1691833..1692654 Shewanella denitrificans OS217 4017765 YP_562465.1 CDS Sden_1457 NC_007954.1 1692994 1693455 D iron-sulfur cluster assembly transcription factor IscR 1692994..1693455 Shewanella denitrificans OS217 4017766 YP_562466.1 CDS Sden_1458 NC_007954.1 1693546 1694760 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1693546..1694760 Shewanella denitrificans OS217 4017767 YP_562467.1 CDS Sden_1459 NC_007954.1 1694797 1695180 D scaffold protein 1694797..1695180 Shewanella denitrificans OS217 4017768 YP_562468.1 CDS Sden_1460 NC_007954.1 1695195 1695518 D iron-sulfur cluster assembly protein IscA 1695195..1695518 Shewanella denitrificans OS217 4017769 YP_562469.1 CDS hscB NC_007954.1 1695566 1696090 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1695566..1696090 Shewanella denitrificans OS217 4017770 YP_562470.1 CDS hscA NC_007954.1 1696162 1698021 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1696162..1698021 Shewanella denitrificans OS217 4017771 YP_562471.1 CDS Sden_1463 NC_007954.1 1698030 1698365 D ferredoxin, 2Fe-2S type 1698030..1698365 Shewanella denitrificans OS217 4017772 YP_562472.1 CDS Sden_1464 NC_007954.1 1698682 1698978 D cytochrome c, class I 1698682..1698978 Shewanella denitrificans OS217 4017773 YP_562473.1 CDS Sden_1465 NC_007954.1 1699118 1699927 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1699118..1699927) Shewanella denitrificans OS217 4017702 YP_562474.1 CDS Sden_1466 NC_007954.1 1699927 1700226 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1699927..1700226) Shewanella denitrificans OS217 4017703 YP_562475.1 CDS Sden_1467 NC_007954.1 1700267 1700812 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1700267..1700812) Shewanella denitrificans OS217 4017704 YP_562476.1 CDS Sden_1468 NC_007954.1 1701077 1701769 D aspartate racemase 1701077..1701769 Shewanella denitrificans OS217 4017705 YP_562477.1 CDS Sden_1469 NC_007954.1 1701837 1702265 D diaminohydroxyphosphoribosylaminopyrimidine deaminase 1701837..1702265 Shewanella denitrificans OS217 4017706 YP_562478.1 CDS Sden_1470 NC_007954.1 1702371 1703006 D orphan protein 1702371..1703006 Shewanella denitrificans OS217 4017707 YP_562479.1 CDS Sden_1471 NC_007954.1 1703206 1703610 R hypothetical protein complement(1703206..1703610) Shewanella denitrificans OS217 4017708 YP_562480.1 CDS Sden_1472 NC_007954.1 1703921 1704232 D hypothetical protein 1703921..1704232 Shewanella denitrificans OS217 4017709 YP_562481.1 CDS Sden_1473 NC_007954.1 1704267 1705469 D transposase, IS4 1704267..1705469 Shewanella denitrificans OS217 4017710 YP_562482.1 CDS Sden_1474 NC_007954.1 1705672 1706142 D GCN5-related N-acetyltransferase 1705672..1706142 Shewanella denitrificans OS217 4017711 YP_562483.1 CDS Sden_1475 NC_007954.1 1706898 1707926 R integrase catalytic subunit complement(1706898..1707926) Shewanella denitrificans OS217 4017712 YP_562484.1 CDS Sden_1476 NC_007954.1 1707953 1708453 R hypothetical protein complement(1707953..1708453) Shewanella denitrificans OS217 4017713 YP_562485.1 CDS Sden_1477 NC_007954.1 1708652 1709083 D hypothetical protein 1708652..1709083 Shewanella denitrificans OS217 4017714 YP_562486.1 CDS Sden_1478 NC_007954.1 1709203 1709616 D glutathione-dependent formaldehyde-activating, GFA 1709203..1709616 Shewanella denitrificans OS217 4017715 YP_562487.1 CDS Sden_1479 NC_007954.1 1709624 1710181 D hypothetical protein 1709624..1710181 Shewanella denitrificans OS217 4017716 YP_562488.1 CDS Sden_1480 NC_007954.1 1710617 1711969 D Na+/H+ antiporter NhaA 1710617..1711969 Shewanella denitrificans OS217 4017717 YP_562489.1 CDS Sden_1481 NC_007954.1 1712131 1714395 R FAD dependent oxidoreductase complement(1712131..1714395) Shewanella denitrificans OS217 4017718 YP_562490.1 CDS Sden_1482 NC_007954.1 1714532 1715743 D beta-ketoacyl synthase 1714532..1715743 Shewanella denitrificans OS217 4017719 YP_562491.1 CDS Sden_1483 NC_007954.1 1715909 1717045 D D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 1715909..1717045 Shewanella denitrificans OS217 4017720 YP_562492.1 CDS Sden_1484 NC_007954.1 1717048 1718064 D aspartate-semialdehyde dehydrogenase, USG-1 related 1717048..1718064 Shewanella denitrificans OS217 4017253 YP_562493.1 CDS Sden_1485 NC_007954.1 1718286 1723571 D ATPase 1718286..1723571 Shewanella denitrificans OS217 4017254 YP_562494.1 CDS truA NC_007954.1 1723719 1724504 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1723719..1724504 Shewanella denitrificans OS217 4017255 YP_562495.1 CDS Sden_1487 NC_007954.1 1724573 1725919 D FolC bifunctional protein 1724573..1725919 Shewanella denitrificans OS217 4017256 YP_562496.1 CDS Sden_1488 NC_007954.1 1726028 1726726 D sporulation related 1726028..1726726 Shewanella denitrificans OS217 4017257 YP_562497.1 CDS Sden_1489 NC_007954.1 1726843 1727343 D colicin V production protein 1726843..1727343 Shewanella denitrificans OS217 4017258 YP_562498.1 CDS Sden_1490 NC_007954.1 1727371 1728885 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1727371..1728885 Shewanella denitrificans OS217 4017259 YP_562499.1 CDS Sden_1491 NC_007954.1 1729015 1730427 R hypothetical protein complement(1729015..1730427) Shewanella denitrificans OS217 4017260 YP_562500.1 CDS Sden_1492 NC_007954.1 1730630 1732516 D hypothetical protein 1730630..1732516 Shewanella denitrificans OS217 4017261 YP_562501.1 CDS Sden_1493 NC_007954.1 1732670 1733500 R methylated-DNA--protein-cysteine methyltransferase complement(1732670..1733500) Shewanella denitrificans OS217 4017262 YP_562502.1 CDS Sden_1494 NC_007954.1 1733519 1734286 R short chain dehydrogenase complement(1733519..1734286) Shewanella denitrificans OS217 4017263 YP_562503.1 CDS Sden_1495 NC_007954.1 1734963 1735175 D periplasmic nitrate reductase NapE 1734963..1735175 Shewanella denitrificans OS217 4017264 YP_562504.1 CDS Sden_1496 NC_007954.1 1735235 1735492 D NapD 1735235..1735492 Shewanella denitrificans OS217 4017265 YP_562505.1 CDS Sden_1497 NC_007954.1 1735495 1737984 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1735495..1737984 Shewanella denitrificans OS217 4017266 YP_562506.1 CDS Sden_1498 NC_007954.1 1737996 1738466 D nitrate reductase cytochrome c-type subunit (NapB) 1737996..1738466 Shewanella denitrificans OS217 4017267 YP_562507.1 CDS Sden_1499 NC_007954.1 1738475 1739062 D periplasmic nitrate reductase c-type cytochrome, NapC/NirT 1738475..1739062 Shewanella denitrificans OS217 4017268 YP_562508.1 CDS Sden_1500 NC_007954.1 1739150 1739434 R histone-like DNA-binding protein complement(1739150..1739434) Shewanella denitrificans OS217 4017269 YP_562509.1 CDS Sden_1501 NC_007954.1 1739692 1741188 D peptidoglycan binding domain-containing protein 1739692..1741188 Shewanella denitrificans OS217 4017270 YP_562510.1 CDS Sden_1502 NC_007954.1 1741358 1741906 D hypothetical protein 1741358..1741906 Shewanella denitrificans OS217 4017271 YP_562511.1 CDS Sden_1503 NC_007954.1 1742231 1742518 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1742231..1742518 Shewanella denitrificans OS217 4017272 YP_562512.1 CDS Sden_1504 NC_007954.1 1742665 1746732 R hypothetical protein complement(1742665..1746732) Shewanella denitrificans OS217 4017383 YP_562513.1 CDS Sden_1505 NC_007954.1 1746729 1748570 R surface antigen (D15) complement(1746729..1748570) Shewanella denitrificans OS217 4017384 YP_562514.1 CDS Sden_1506 NC_007954.1 1748842 1749258 D CBS domain-containing protein 1748842..1749258 Shewanella denitrificans OS217 4017385 YP_562515.1 CDS Sden_1507 NC_007954.1 1749355 1753230 D ATP-dependent helicase HrpA 1749355..1753230 Shewanella denitrificans OS217 4017386 YP_562516.1 CDS Sden_1508 NC_007954.1 1753273 1753626 D hypothetical protein 1753273..1753626 Shewanella denitrificans OS217 4017387 YP_562517.1 CDS Sden_1509 NC_007954.1 1753785 1756856 R acriflavin resistance protein complement(1753785..1756856) Shewanella denitrificans OS217 4017388 YP_562518.1 CDS Sden_1510 NC_007954.1 1756853 1757926 R secretion protein HlyD complement(1756853..1757926) Shewanella denitrificans OS217 4017389 YP_562519.1 CDS Sden_1511 NC_007954.1 1757928 1759001 R secretion protein HlyD complement(1757928..1759001) Shewanella denitrificans OS217 4017390 YP_562520.1 CDS Sden_1512 NC_007954.1 1759191 1759931 D regulatory protein, TetR 1759191..1759931 Shewanella denitrificans OS217 4017391 YP_562521.1 CDS queF NC_007954.1 1760073 1760927 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1760073..1760927) Shewanella denitrificans OS217 4017392 YP_562522.1 CDS Sden_1514 NC_007954.1 1760982 1761638 D SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1760982..1761638 Shewanella denitrificans OS217 4017393 YP_562523.1 CDS Sden_1515 NC_007954.1 1761642 1762415 R hypothetical protein complement(1761642..1762415) Shewanella denitrificans OS217 4017394 YP_562524.1 CDS Sden_1516 NC_007954.1 1762416 1762745 R hypothetical protein complement(1762416..1762745) Shewanella denitrificans OS217 4017395 YP_562525.1 CDS Sden_1517 NC_007954.1 1762938 1763321 D hypothetical protein 1762938..1763321 Shewanella denitrificans OS217 4017396 YP_562526.1 CDS Sden_1518 NC_007954.1 1763329 1763565 R hypothetical protein complement(1763329..1763565) Shewanella denitrificans OS217 4017397 YP_562527.1 CDS Sden_1519 NC_007954.1 1763682 1764320 D GCN5-related N-acetyltransferase 1763682..1764320 Shewanella denitrificans OS217 4017398 YP_562528.1 CDS Sden_1520 NC_007954.1 1765264 1766715 R Sodium/proline symporter complement(1765264..1766715) Shewanella denitrificans OS217 4017399 YP_562529.1 CDS Sden_1521 NC_007954.1 1766993 1767697 R hypothetical protein complement(1766993..1767697) Shewanella denitrificans OS217 4017400 YP_562530.1 CDS Sden_1522 NC_007954.1 1767690 1768253 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1767690..1768253) Shewanella denitrificans OS217 4017401 YP_562531.1 CDS Sden_1523 NC_007954.1 1768349 1770109 R hypothetical protein complement(1768349..1770109) Shewanella denitrificans OS217 4017996 YP_562532.1 CDS Sden_1524 NC_007954.1 1770103 1772178 R TPR repeat-containing protein complement(1770103..1772178) Shewanella denitrificans OS217 4017997 YP_562533.1 CDS Sden_1525 NC_007954.1 1772178 1773170 R von Willebrand factor, type A complement(1772178..1773170) Shewanella denitrificans OS217 4017998 YP_562534.1 CDS Sden_1526 NC_007954.1 1773174 1773683 R hypothetical protein complement(1773174..1773683) Shewanella denitrificans OS217 4017999 YP_562535.1 CDS Sden_1527 NC_007954.1 1773684 1774619 R hypothetical protein complement(1773684..1774619) Shewanella denitrificans OS217 4018000 YP_562536.1 CDS Sden_1528 NC_007954.1 1774641 1775597 R ATPase complement(1774641..1775597) Shewanella denitrificans OS217 4018001 YP_562537.1 CDS fadI NC_007954.1 1775842 1777152 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1775842..1777152 Shewanella denitrificans OS217 4018002 YP_562538.1 CDS fadJ NC_007954.1 1777158 1779284 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1777158..1779284 Shewanella denitrificans OS217 4018003 YP_562539.1 CDS Sden_1531 NC_007954.1 1779600 1779800 D hypothetical protein 1779600..1779800 Shewanella denitrificans OS217 4018004 YP_562540.1 CDS Sden_1532 NC_007954.1 1780435 1784787 R GGDEF domain-containing protein complement(1780435..1784787) Shewanella denitrificans OS217 4018005 YP_562541.1 CDS Sden_1533 NC_007954.1 1784955 1787744 R peptidase M16-like protein complement(1784955..1787744) Shewanella denitrificans OS217 4018006 YP_562542.1 CDS Sden_1534 NC_007954.1 1788016 1788516 D phosphohistidine phosphatase SixA 1788016..1788516 Shewanella denitrificans OS217 4018007 YP_562543.1 CDS Sden_1535 NC_007954.1 1788557 1789090 R hypothetical protein complement(1788557..1789090) Shewanella denitrificans OS217 4018008 YP_562544.1 CDS Sden_1536 NC_007954.1 1789164 1790108 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1789164..1790108 Shewanella denitrificans OS217 4018009 YP_562545.1 CDS Sden_1537 NC_007954.1 1790233 1791327 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1790233..1791327 Shewanella denitrificans OS217 4018010 YP_562546.1 CDS Sden_1538 NC_007954.1 1791408 1792607 D major facilitator transporter 1791408..1792607 Shewanella denitrificans OS217 4018011 YP_562547.1 CDS Sden_1539 NC_007954.1 1792657 1793838 D ATP-NAD/AcoX kinase 1792657..1793838 Shewanella denitrificans OS217 4018012 YP_562548.1 CDS Sden_1540 NC_007954.1 1793842 1794120 D hypothetical protein 1793842..1794120 Shewanella denitrificans OS217 4018013 YP_562549.1 CDS Sden_1541 NC_007954.1 1794134 1794736 D tRNA/rRNA methyltransferase (SpoU) 1794134..1794736 Shewanella denitrificans OS217 4018014 YP_562550.1 CDS Sden_1542 NC_007954.1 1794800 1795264 D hypothetical protein 1794800..1795264 Shewanella denitrificans OS217 4018015 YP_562551.1 CDS Sden_1543 NC_007954.1 1796751 1797137 R hypothetical protein complement(1796751..1797137) Shewanella denitrificans OS217 4018016 YP_562552.1 CDS Sden_1544 NC_007954.1 1797134 1798177 R hypothetical protein complement(1797134..1798177) Shewanella denitrificans OS217 4018017 YP_562553.1 CDS Sden_1545 NC_007954.1 1798266 1798586 D hypothetical protein 1798266..1798586 Shewanella denitrificans OS217 4018018 YP_562554.1 CDS Sden_1546 NC_007954.1 1798573 1799469 D pseudouridylate synthase 1798573..1799469 Shewanella denitrificans OS217 4018019 YP_562555.1 CDS Sden_1547 NC_007954.1 1799587 1800039 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1799587..1800039 Shewanella denitrificans OS217 4018020 YP_562556.1 CDS Sden_1548 NC_007954.1 1800015 1801463 D PTS system, glucose-like IIB component 1800015..1801463 Shewanella denitrificans OS217 4018021 YP_562557.1 CDS purU NC_007954.1 1801626 1802483 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1801626..1802483 Shewanella denitrificans OS217 4018022 YP_562558.1 CDS Sden_1550 NC_007954.1 1802610 1802954 R hypothetical protein complement(1802610..1802954) Shewanella denitrificans OS217 4018023 YP_562559.1 CDS dapD NC_007954.1 1803218 1804042 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1803218..1804042) Shewanella denitrificans OS217 4018024 YP_562560.1 CDS Sden_1552 NC_007954.1 1804074 1806659 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1804074..1806659) Shewanella denitrificans OS217 4018025 YP_562561.1 CDS Sden_1553 NC_007954.1 1806768 1807565 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1806768..1807565) Shewanella denitrificans OS217 4018026 YP_562562.1 CDS rpsB NC_007954.1 1808003 1808731 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1808003..1808731 Shewanella denitrificans OS217 4018028 YP_562563.1 CDS tsf NC_007954.1 1808848 1809699 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1808848..1809699 Shewanella denitrificans OS217 4018029 YP_562564.1 CDS pyrH NC_007954.1 1809767 1810498 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1809767..1810498 Shewanella denitrificans OS217 4018030 YP_562565.1 CDS frr NC_007954.1 1810605 1811162 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1810605..1811162 Shewanella denitrificans OS217 4018031 YP_562566.1 CDS Sden_1558 NC_007954.1 1811308 1812123 D UDP diphosphate synthase 1811308..1812123 Shewanella denitrificans OS217 4018032 YP_562567.1 CDS Sden_1559 NC_007954.1 1812145 1813002 D phosphatidate cytidylyltransferase 1812145..1813002 Shewanella denitrificans OS217 4018033 YP_562568.1 CDS Sden_1560 NC_007954.1 1813006 1814211 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1813006..1814211 Shewanella denitrificans OS217 4018034 YP_562569.1 CDS Sden_1561 NC_007954.1 1814225 1815595 D peptidase M50, membrane-associated zinc metallopeptidase 1814225..1815595 Shewanella denitrificans OS217 4018035 YP_562570.1 CDS Sden_1562 NC_007954.1 1815628 1818111 D surface antigen (D15) 1815628..1818111 Shewanella denitrificans OS217 4018036 YP_562571.1 CDS Sden_1563 NC_007954.1 1818179 1818676 D outer membrane chaperone Skp (OmpH) 1818179..1818676 Shewanella denitrificans OS217 4018037 YP_562572.1 CDS lpxD NC_007954.1 1818680 1819702 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1818680..1819702 Shewanella denitrificans OS217 4018038 YP_562573.1 CDS fabZ NC_007954.1 1819730 1820191 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1819730..1820191 Shewanella denitrificans OS217 4018039 YP_562574.1 CDS Sden_1566 NC_007954.1 1820188 1820958 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1820188..1820958 Shewanella denitrificans OS217 4018040 YP_562575.1 CDS lpxB NC_007954.1 1820992 1822143 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1820992..1822143 Shewanella denitrificans OS217 4018041 YP_562576.1 CDS rnhB NC_007954.1 1822231 1822875 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1822231..1822875 Shewanella denitrificans OS217 4018042 YP_562577.1 CDS dnaE NC_007954.1 1823085 1826564 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1823085..1826564 Shewanella denitrificans OS217 4018043 YP_562578.1 CDS Sden_1570 NC_007954.1 1826662 1828092 D tRNA(Ile)-lysidine synthetase-like protein 1826662..1828092 Shewanella denitrificans OS217 4018044 YP_562579.1 CDS Sden_1571 NC_007954.1 1828448 1829299 R integrase catalytic subunit complement(1828448..1829299) Shewanella denitrificans OS217 4018046 YP_562580.1 CDS Sden_1572 NC_007954.1 1829296 1829607 R transposase IS3/IS911 complement(1829296..1829607) Shewanella denitrificans OS217 4018047 YP_562581.1 CDS Sden_1573 NC_007954.1 1830373 1831347 D hypothetical protein 1830373..1831347 Shewanella denitrificans OS217 4018048 YP_562582.1 CDS Sden_1574 NC_007954.1 1831344 1832285 R integrase catalytic subunit complement(1831344..1832285) Shewanella denitrificans OS217 4018049 YP_562583.1 CDS Sden_1575 NC_007954.1 1832427 1833167 D hypothetical protein 1832427..1833167 Shewanella denitrificans OS217 4018050 YP_562584.1 CDS Sden_1576 NC_007954.1 1833535 1834332 D hypothetical protein 1833535..1834332 Shewanella denitrificans OS217 4018051 YP_562585.1 CDS Sden_1577 NC_007954.1 1834855 1835625 D hypothetical protein 1834855..1835625 Shewanella denitrificans OS217 4018052 YP_562586.1 CDS Sden_1579 NC_007954.1 1836856 1837968 R hypothetical protein complement(1836856..1837968) Shewanella denitrificans OS217 4018054 YP_562587.1 CDS Sden_1580 NC_007954.1 1837980 1839629 R hypothetical protein complement(1837980..1839629) Shewanella denitrificans OS217 4018055 YP_562588.1 CDS Sden_1581 NC_007954.1 1839719 1840174 D hypothetical protein 1839719..1840174 Shewanella denitrificans OS217 4018056 YP_562589.1 CDS Sden_1582 NC_007954.1 1840302 1840709 R glutathione-dependent formaldehyde-activating, GFA complement(1840302..1840709) Shewanella denitrificans OS217 4018057 YP_562590.1 CDS Sden_1583 NC_007954.1 1841044 1841805 D ABC transporter periplasmic-binding protein 1841044..1841805 Shewanella denitrificans OS217 4018058 YP_562591.1 CDS Sden_1584 NC_007954.1 1842127 1842570 D glutaredoxin 1842127..1842570 Shewanella denitrificans OS217 4018059 YP_562592.1 CDS Sden_1585 NC_007954.1 1842764 1843483 D regulatory protein, TetR 1842764..1843483 Shewanella denitrificans OS217 4018060 YP_562593.1 CDS Sden_1586 NC_007954.1 1843575 1844708 D secretion protein HlyD 1843575..1844708 Shewanella denitrificans OS217 4018061 YP_562594.1 CDS Sden_1587 NC_007954.1 1844711 1847770 D acriflavin resistance protein 1844711..1847770 Shewanella denitrificans OS217 4018062 YP_562595.1 CDS Sden_1588 NC_007954.1 1848383 1848979 D hypothetical protein 1848383..1848979 Shewanella denitrificans OS217 4018063 YP_562596.1 CDS Sden_1589 NC_007954.1 1849079 1850053 R hypothetical protein complement(1849079..1850053) Shewanella denitrificans OS217 4018064 YP_562597.1 CDS Sden_1590 NC_007954.1 1850236 1850718 D regulatory protein, MarR 1850236..1850718 Shewanella denitrificans OS217 4018065 YP_562598.1 CDS Sden_1591 NC_007954.1 1850880 1851404 D GCN5-related N-acetyltransferase 1850880..1851404 Shewanella denitrificans OS217 4018066 YP_562599.1 CDS Sden_1592 NC_007954.1 1851473 1852207 R EAL domain-containing protein complement(1851473..1852207) Shewanella denitrificans OS217 4018067 YP_562600.1 CDS fur NC_007954.1 1852441 1852872 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(1852441..1852872) Shewanella denitrificans OS217 4018068 YP_562601.1 CDS Sden_1594 NC_007954.1 1853162 1853923 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1853162..1853923 Shewanella denitrificans OS217 4018069 YP_562602.1 CDS Sden_1595 NC_007954.1 1853916 1854410 D hypothetical protein 1853916..1854410 Shewanella denitrificans OS217 4018070 YP_562603.1 CDS cpdB NC_007954.1 1854602 1856665 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(1854602..1856665) Shewanella denitrificans OS217 4018071 YP_562604.1 CDS Sden_1597 NC_007954.1 1856912 1859092 R peptidyl-dipeptidase Dcp complement(1856912..1859092) Shewanella denitrificans OS217 4018072 YP_562605.1 CDS Sden_1598 NC_007954.1 1859327 1859725 R ABC-type phosphate transport system, periplasmic component complement(1859327..1859725) Shewanella denitrificans OS217 4018073 YP_562606.1 CDS Sden_1599 NC_007954.1 1859741 1860985 R hypothetical protein complement(1859741..1860985) Shewanella denitrificans OS217 4018074 YP_562607.1 CDS Sden_1600 NC_007954.1 1861068 1862684 R chemotaxis sensory transducer complement(1861068..1862684) Shewanella denitrificans OS217 4018075 YP_562608.1 CDS Sden_1601 NC_007954.1 1863229 1864731 R chemotaxis sensory transducer complement(1863229..1864731) Shewanella denitrificans OS217 4018076 YP_562609.1 CDS pheS NC_007954.1 1865192 1866175 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1865192..1866175 Shewanella denitrificans OS217 4018077 YP_562610.1 CDS pheT NC_007954.1 1866191 1868578 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1866191..1868578 Shewanella denitrificans OS217 4018078 YP_562611.1 CDS ihfA NC_007954.1 1868582 1868881 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1868582..1868881 Shewanella denitrificans OS217 4018079 YP_562612.1 CDS Sden_1605 NC_007954.1 1869028 1869963 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1869028..1869963 Shewanella denitrificans OS217 4018080 YP_562613.1 CDS Sden_1606 NC_007954.1 1870042 1870965 D MscS mechanosensitive ion channel 1870042..1870965 Shewanella denitrificans OS217 4018081 YP_562614.1 CDS Sden_1607 NC_007954.1 1871014 1871400 D hypothetical protein 1871014..1871400 Shewanella denitrificans OS217 4018082 YP_562615.1 CDS Sden_1608 NC_007954.1 1871768 1872700 R hypothetical protein complement(1871768..1872700) Shewanella denitrificans OS217 4018083 YP_562616.1 CDS Sden_1609 NC_007954.1 1873079 1873228 R hypothetical protein complement(1873079..1873228) Shewanella denitrificans OS217 4018084 YP_562617.1 CDS Sden_1610 NC_007954.1 1873536 1874513 R hypothetical protein complement(1873536..1874513) Shewanella denitrificans OS217 4018085 YP_562618.1 CDS Sden_1611 NC_007954.1 1874994 1875653 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(1874994..1875653) Shewanella denitrificans OS217 4018086 YP_562619.1 CDS Sden_1612 NC_007954.1 1875669 1876442 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1875669..1876442) Shewanella denitrificans OS217 4018087 YP_562620.1 CDS Sden_1613 NC_007954.1 1876424 1877176 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1876424..1877176) Shewanella denitrificans OS217 4018088 YP_562621.1 CDS hisH NC_007954.1 1877173 1877892 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1877173..1877892) Shewanella denitrificans OS217 4018089 YP_562622.1 CDS Sden_1615 NC_007954.1 1877902 1878969 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(1877902..1878969) Shewanella denitrificans OS217 4018090 YP_562623.1 CDS Sden_1616 NC_007954.1 1879034 1880092 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1879034..1880092) Shewanella denitrificans OS217 4018091 YP_562624.1 CDS hisD NC_007954.1 1880079 1881395 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1880079..1881395) Shewanella denitrificans OS217 4018092 YP_562625.1 CDS hisG NC_007954.1 1881400 1882299 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1881400..1882299) Shewanella denitrificans OS217 4018093 YP_562626.1 CDS Sden_1619 NC_007954.1 1882873 1884762 D helicase c2 1882873..1884762 Shewanella denitrificans OS217 4018094 YP_562627.1 CDS Sden_1620 NC_007954.1 1884806 1885510 D peptidase M22, glycoprotease 1884806..1885510 Shewanella denitrificans OS217 4018095 YP_562628.1 CDS Sden_1621 NC_007954.1 1885620 1885961 D hypothetical protein 1885620..1885961 Shewanella denitrificans OS217 4018096 YP_562629.1 CDS Sden_1622 NC_007954.1 1885954 1886637 D hypothetical protein 1885954..1886637 Shewanella denitrificans OS217 4018097 YP_562630.1 CDS Sden_1623 NC_007954.1 1886708 1887577 D hypothetical protein 1886708..1887577 Shewanella denitrificans OS217 4018098 YP_562631.1 CDS Sden_1624 NC_007954.1 1887733 1888653 D alpha/beta hydrolase fold 1887733..1888653 Shewanella denitrificans OS217 4018099 YP_562632.1 CDS Sden_1625 NC_007954.1 1888857 1890530 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1888857..1890530 Shewanella denitrificans OS217 4018100 YP_562633.1 CDS Sden_1626 NC_007954.1 1890635 1891750 D ribonuclease D 1890635..1891750 Shewanella denitrificans OS217 4018101 YP_562634.1 CDS minE NC_007954.1 1891817 1892083 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1891817..1892083) Shewanella denitrificans OS217 4018102 YP_562635.1 CDS Sden_1628 NC_007954.1 1892086 1892895 R septum site-determining protein MinD complement(1892086..1892895) Shewanella denitrificans OS217 4018103 YP_562636.1 CDS minC NC_007954.1 1892925 1893590 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1892925..1893590) Shewanella denitrificans OS217 4018104 YP_562637.1 CDS Sden_1630 NC_007954.1 1893714 1894001 D hypothetical protein 1893714..1894001 Shewanella denitrificans OS217 4018105 YP_562638.1 CDS Sden_1631 NC_007954.1 1894062 1895051 D membrane-bound lytic murein transglycosylase B 1894062..1895051 Shewanella denitrificans OS217 4018106 YP_562639.1 CDS Sden_1632 NC_007954.1 1895112 1895552 D hypothetical protein 1895112..1895552 Shewanella denitrificans OS217 4018107 YP_562640.1 CDS Sden_1633 NC_007954.1 1895611 1896138 R disulphide bond formation protein DsbB complement(1895611..1896138) Shewanella denitrificans OS217 4018108 YP_562641.1 CDS nhaB NC_007954.1 1896237 1897823 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(1896237..1897823) Shewanella denitrificans OS217 4018109 YP_562642.1 CDS Sden_1635 NC_007954.1 1898301 1899020 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1898301..1899020 Shewanella denitrificans OS217 4018110 YP_562643.1 CDS Sden_1636 NC_007954.1 1899112 1900626 R SpoVR family protein complement(1899112..1900626) Shewanella denitrificans OS217 4018111 YP_562644.1 CDS Sden_1637 NC_007954.1 1900636 1901901 R hypothetical protein complement(1900636..1901901) Shewanella denitrificans OS217 4018112 YP_562645.1 CDS Sden_1638 NC_007954.1 1901962 1903896 R PrkA AAA complement(1901962..1903896) Shewanella denitrificans OS217 4018113 YP_562646.1 CDS Sden_1639 NC_007954.1 1904190 1904774 R superoxide dismutase complement(1904190..1904774) Shewanella denitrificans OS217 4018114 YP_562647.1 CDS Sden_1640 NC_007954.1 1904996 1905331 D glutaredoxin-like protein 1904996..1905331 Shewanella denitrificans OS217 4018115 YP_562648.1 CDS Sden_1641 NC_007954.1 1905432 1906655 R uracil-xanthine permease complement(1905432..1906655) Shewanella denitrificans OS217 4018116 YP_562649.1 CDS Sden_1642 NC_007954.1 1906748 1907926 D hypothetical protein 1906748..1907926 Shewanella denitrificans OS217 4018117 YP_562650.1 CDS Sden_1643 NC_007954.1 1907992 1908702 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1907992..1908702 Shewanella denitrificans OS217 4018118 YP_562651.1 CDS Sden_1644 NC_007954.1 1908771 1910759 R hypothetical protein complement(1908771..1910759) Shewanella denitrificans OS217 4018119 YP_562652.1 CDS Sden_1645 NC_007954.1 1910834 1911262 R hypothetical protein complement(1910834..1911262) Shewanella denitrificans OS217 4018120 YP_562653.1 CDS Sden_1646 NC_007954.1 1911264 1911614 R arsenate reductase complement(1911264..1911614) Shewanella denitrificans OS217 4018121 YP_562654.1 CDS Sden_1647 NC_007954.1 1911761 1913233 R peptidase M48, Ste24p complement(1911761..1913233) Shewanella denitrificans OS217 4018122 YP_562655.1 CDS Sden_1648 NC_007954.1 1913384 1913602 D hypothetical protein 1913384..1913602 Shewanella denitrificans OS217 4018123 YP_562656.1 CDS Sden_1649 NC_007954.1 1913820 1914902 D hypothetical protein 1913820..1914902 Shewanella denitrificans OS217 4018124 YP_562657.1 CDS fumC NC_007954.1 1914964 1916352 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1914964..1916352 Shewanella denitrificans OS217 4018125 YP_562658.1 CDS Sden_1651 NC_007954.1 1916383 1916772 R hypothetical protein complement(1916383..1916772) Shewanella denitrificans OS217 4018126 YP_562659.1 CDS Sden_1652 NC_007954.1 1916961 1918433 D protein kinase 1916961..1918433 Shewanella denitrificans OS217 4018127 YP_562660.1 CDS Sden_1653 NC_007954.1 1918507 1918971 D uracil-DNA glycosylase family protein 1918507..1918971 Shewanella denitrificans OS217 4018128 YP_562661.1 CDS Sden_1654 NC_007954.1 1919092 1919991 R protein of unknown function RIO1 complement(1919092..1919991) Shewanella denitrificans OS217 4018129 YP_562662.1 CDS Sden_1655 NC_007954.1 1920888 1922639 R gamma-glutamyltransferase complement(1920888..1922639) Shewanella denitrificans OS217 4018131 YP_562663.1 CDS Sden_1656 NC_007954.1 1922790 1924091 D hypothetical protein 1922790..1924091 Shewanella denitrificans OS217 4018132 YP_562664.1 CDS Sden_1657 NC_007954.1 1924427 1925776 R adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1924427..1925776) Shewanella denitrificans OS217 4018133 YP_562665.1 CDS Sden_1658 NC_007954.1 1925875 1926948 D biotin synthase 1925875..1926948 Shewanella denitrificans OS217 4018134 YP_562666.1 CDS Sden_1659 NC_007954.1 1927054 1928274 D 8-amino-7-oxononanoate synthase 1927054..1928274 Shewanella denitrificans OS217 4018135 YP_562667.1 CDS Sden_1660 NC_007954.1 1928274 1929203 D methyltransferase type 11 1928274..1929203 Shewanella denitrificans OS217 4018136 YP_562668.1 CDS bioD NC_007954.1 1929229 1929924 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1929229..1929924 Shewanella denitrificans OS217 4018137 YP_562669.1 CDS Sden_1662 NC_007954.1 1930154 1931755 D GGDEF domain-containing protein 1930154..1931755 Shewanella denitrificans OS217 4018138 YP_562670.1 CDS Sden_1663 NC_007954.1 1931845 1932501 D GntR-like protein 1931845..1932501 Shewanella denitrificans OS217 4018139 YP_562671.1 CDS prpB NC_007954.1 1932544 1933422 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1932544..1933422 Shewanella denitrificans OS217 4018140 YP_562672.1 CDS Sden_1665 NC_007954.1 1933527 1934651 D 2-methylcitrate synthase/citrate synthase II 1933527..1934651 Shewanella denitrificans OS217 4018141 YP_562673.1 CDS Sden_1666 NC_007954.1 1934776 1937379 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1934776..1937379 Shewanella denitrificans OS217 4018142 YP_562674.1 CDS Sden_1667 NC_007954.1 1937579 1938775 D PrpF, AcnD-accessory 1937579..1938775 Shewanella denitrificans OS217 4018143 YP_562675.1 CDS Sden_1668 NC_007954.1 1938979 1940172 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1938979..1940172 Shewanella denitrificans OS217 4018144 YP_562676.1 CDS Sden_1669 NC_007954.1 1940279 1941229 R 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1940279..1941229) Shewanella denitrificans OS217 4018145 YP_562677.1 CDS Sden_1670 NC_007954.1 1941364 1942227 D acyl-CoA thioesterase II 1941364..1942227 Shewanella denitrificans OS217 4018146 YP_562678.1 CDS Sden_1671 NC_007954.1 1942224 1942652 D hypothetical protein 1942224..1942652 Shewanella denitrificans OS217 4018147 YP_562679.1 CDS Sden_1672 NC_007954.1 1942657 1943970 D major facilitator transporter 1942657..1943970 Shewanella denitrificans OS217 4018148 YP_562680.1 CDS Sden_1673 NC_007954.1 1944126 1945274 R hypothetical protein complement(1944126..1945274) Shewanella denitrificans OS217 4018149 YP_562681.1 CDS Sden_1674 NC_007954.1 1945274 1948813 R transcription-repair coupling factor complement(1945274..1948813) Shewanella denitrificans OS217 4018150 YP_562682.1 CDS Sden_1675 NC_007954.1 1948967 1949635 R hypothetical protein complement(1948967..1949635) Shewanella denitrificans OS217 4018151 YP_562683.1 CDS Sden_1676 NC_007954.1 1949768 1951003 D LolC/E family lipoprotein releasing system, transmembrane protein 1949768..1951003 Shewanella denitrificans OS217 4018152 YP_562684.1 CDS Sden_1677 NC_007954.1 1951093 1951794 D lipoprotein releasing system, ATP-binding protein 1951093..1951794 Shewanella denitrificans OS217 4018153 YP_562685.1 CDS Sden_1678 NC_007954.1 1951791 1953056 D LolC/E family lipoprotein releasing system, transmembrane protein 1951791..1953056 Shewanella denitrificans OS217 4018154 YP_562686.1 CDS Sden_1679 NC_007954.1 1953232 1954266 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1953232..1954266 Shewanella denitrificans OS217 4018155 YP_562687.1 CDS Sden_1680 NC_007954.1 1954542 1956398 D arachidonate 15-lipoxygenase 1954542..1956398 Shewanella denitrificans OS217 4018156 YP_562688.1 CDS Sden_1681 NC_007954.1 1956512 1958227 R hypothetical protein complement(1956512..1958227) Shewanella denitrificans OS217 4018157 YP_562689.1 CDS Sden_1682 NC_007954.1 1958481 1959380 D hypothetical protein 1958481..1959380 Shewanella denitrificans OS217 4018158 YP_562690.1 CDS Sden_1683 NC_007954.1 1959526 1964505 D multi-sensor hybrid histidine kinase 1959526..1964505 Shewanella denitrificans OS217 4018159 YP_562691.1 CDS Sden_1684 NC_007954.1 1964499 1965470 D GGDEF domain-containing protein 1964499..1965470 Shewanella denitrificans OS217 4018160 YP_562692.1 CDS Sden_1685 NC_007954.1 1965500 1966807 R hypothetical protein complement(1965500..1966807) Shewanella denitrificans OS217 4018161 YP_562693.1 CDS Sden_1686 NC_007954.1 1966954 1967457 D hypothetical protein 1966954..1967457 Shewanella denitrificans OS217 4018162 YP_562694.1 CDS Sden_1687 NC_007954.1 1967457 1967681 D helix-turn-helix type 3 1967457..1967681 Shewanella denitrificans OS217 4018163 YP_562695.1 CDS Sden_1688 NC_007954.1 1968480 1969034 D hypothetical protein 1968480..1969034 Shewanella denitrificans OS217 4018164 YP_562696.1 CDS Sden_1689 NC_007954.1 1969233 1969733 D hypothetical protein 1969233..1969733 Shewanella denitrificans OS217 4018165 YP_562697.1 CDS Sden_1690 NC_007954.1 1969913 1970353 D hypothetical protein 1969913..1970353 Shewanella denitrificans OS217 4018166 YP_562698.1 CDS Sden_1691 NC_007954.1 1970507 1985092 D hypothetical protein 1970507..1985092 Shewanella denitrificans OS217 4018167 YP_562699.1 CDS Sden_1692 NC_007954.1 1985194 1986858 D hypothetical protein 1985194..1986858 Shewanella denitrificans OS217 4018168 YP_562700.1 CDS Sden_1693 NC_007954.1 1987847 1989589 D hypothetical protein 1987847..1989589 Shewanella denitrificans OS217 4018169 YP_562701.1 CDS Sden_1694 NC_007954.1 1990430 1991983 D hypothetical protein 1990430..1991983 Shewanella denitrificans OS217 4018170 YP_562702.1 CDS Sden_1695 NC_007954.1 1992144 1993340 D hypothetical protein 1992144..1993340 Shewanella denitrificans OS217 4018171 YP_562703.1 CDS Sden_1696 NC_007954.1 1993490 1993972 D hypothetical protein 1993490..1993972 Shewanella denitrificans OS217 4018172 YP_562704.1 CDS Sden_1697 NC_007954.1 1993969 1994787 D N-acetylmuramoyl-L-alanine amidase 1993969..1994787 Shewanella denitrificans OS217 4018173 YP_562705.1 CDS Sden_1698 NC_007954.1 1994850 1996214 D cell division protein FtsZ 1994850..1996214 Shewanella denitrificans OS217 4018174 YP_562706.1 CDS Sden_1699 NC_007954.1 1996246 2000436 R ATP-binding region, ATPase-like protein complement(1996246..2000436) Shewanella denitrificans OS217 4018175 YP_562707.1 CDS Sden_1700 NC_007954.1 2000490 2000729 R hypothetical protein complement(2000490..2000729) Shewanella denitrificans OS217 4018176 YP_562708.1 CDS Sden_1701 NC_007954.1 2000846 2002483 R hypothetical protein complement(2000846..2002483) Shewanella denitrificans OS217 4018177 YP_562709.1 CDS Sden_1702 NC_007954.1 2004366 2005727 R MATE efflux family protein complement(2004366..2005727) Shewanella denitrificans OS217 4018180 YP_562710.1 CDS Sden_1703 NC_007954.1 2005757 2006371 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2005757..2006371 Shewanella denitrificans OS217 4018181 YP_562711.1 CDS Sden_1704 NC_007954.1 2006451 2006669 R hypothetical protein complement(2006451..2006669) Shewanella denitrificans OS217 4018182 YP_562712.1 CDS Sden_1705 NC_007954.1 2006960 2008888 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2006960..2008888 Shewanella denitrificans OS217 4018183 YP_562713.1 CDS Sden_1706 NC_007954.1 2009048 2009434 D initiation factor 3 2009048..2009434 Shewanella denitrificans OS217 4018184 YP_562714.2 CDS rpmI NC_007954.1 2009519 2009713 D 50S ribosomal protein L35 2009519..2009713 Shewanella denitrificans OS217 4018185 YP_562715.1 CDS rplT NC_007954.1 2009732 2010088 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2009732..2010088 Shewanella denitrificans OS217 4018186 YP_562716.1 CDS Sden_1709 NC_007954.1 2010240 2011349 D NADH:flavin oxidoreductase/NADH oxidase 2010240..2011349 Shewanella denitrificans OS217 4018187 YP_562717.1 CDS Sden_1710 NC_007954.1 2011506 2014688 R acriflavin resistance protein complement(2011506..2014688) Shewanella denitrificans OS217 4018188 YP_562718.1 CDS Sden_1711 NC_007954.1 2014691 2015899 R secretion protein HlyD complement(2014691..2015899) Shewanella denitrificans OS217 4018189 YP_562719.1 CDS Sden_1712 NC_007954.1 2016052 2016615 D GCN5-related N-acetyltransferase 2016052..2016615 Shewanella denitrificans OS217 4018190 YP_562720.1 CDS Sden_1713 NC_007954.1 2016731 2017684 R thioredoxin reductase complement(2016731..2017684) Shewanella denitrificans OS217 4018191 YP_562721.1 CDS Sden_1714 NC_007954.1 2017930 2018799 R AraC-type transcriptional regulator-like protein complement(2017930..2018799) Shewanella denitrificans OS217 4018192 YP_562722.1 CDS Sden_1715 NC_007954.1 2019031 2020200 D iron-containing alcohol dehydrogenase 2019031..2020200 Shewanella denitrificans OS217 4018193 YP_562723.1 CDS Sden_1716 NC_007954.1 2020283 2022934 R hypothetical protein complement(2020283..2022934) Shewanella denitrificans OS217 4018194 YP_562724.1 CDS Sden_1717 NC_007954.1 2022921 2023562 R paraquat-inducible protein A complement(2022921..2023562) Shewanella denitrificans OS217 4018195 YP_562725.1 CDS Sden_1718 NC_007954.1 2023552 2024181 R paraquat-inducible protein A complement(2023552..2024181) Shewanella denitrificans OS217 4018196 YP_562726.1 CDS Sden_1719 NC_007954.1 2024430 2024729 D YebG 2024430..2024729 Shewanella denitrificans OS217 4018197 YP_562727.1 CDS Sden_1720 NC_007954.1 2024769 2025227 D GAF domain-containing protein 2024769..2025227 Shewanella denitrificans OS217 4018198 YP_562728.1 CDS Sden_1721 NC_007954.1 2025433 2026119 D affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 2025433..2026119 Shewanella denitrificans OS217 4018199 YP_562729.1 CDS Sden_1722 NC_007954.1 2026144 2028195 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2026144..2028195 Shewanella denitrificans OS217 4018200 YP_562730.1 CDS pepN NC_007954.1 2028411 2030969 D aminopeptidase N 2028411..2030969 Shewanella denitrificans OS217 4018201 YP_562731.1 CDS Sden_1724 NC_007954.1 2031134 2031349 D hypothetical protein 2031134..2031349 Shewanella denitrificans OS217 4018202 YP_562732.1 CDS Sden_1725 NC_007954.1 2031680 2033728 D hypothetical protein 2031680..2033728 Shewanella denitrificans OS217 4018203 YP_562733.1 CDS Sden_1726 NC_007954.1 2033740 2035104 D hypothetical protein 2033740..2035104 Shewanella denitrificans OS217 4018204 YP_562734.1 CDS Sden_1727 NC_007954.1 2035162 2036169 D BNR repeat-containing protein 2035162..2036169 Shewanella denitrificans OS217 4018205 YP_562735.1 CDS Sden_1728 NC_007954.1 2036218 2038527 D hypothetical protein 2036218..2038527 Shewanella denitrificans OS217 4018206 YP_562736.1 CDS Sden_1729 NC_007954.1 2038819 2043663 D NAD-glutamate dehydrogenase 2038819..2043663 Shewanella denitrificans OS217 4018207 YP_562737.1 CDS Sden_1730 NC_007954.1 2043725 2044744 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2043725..2044744 Shewanella denitrificans OS217 4018208 YP_562738.1 CDS Sden_1731 NC_007954.1 2044910 2045443 D hypothetical protein 2044910..2045443 Shewanella denitrificans OS217 4018209 YP_562739.1 CDS Sden_1732 NC_007954.1 2046128 2048236 D sodium/hydrogen exchanger 2046128..2048236 Shewanella denitrificans OS217 4018210 YP_562740.1 CDS bcp NC_007954.1 2048381 2048845 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(2048381..2048845) Shewanella denitrificans OS217 4018211 YP_562741.1 CDS Sden_1734 NC_007954.1 2048854 2049390 R glycine cleavage system transcriptional repressor complement(2048854..2049390) Shewanella denitrificans OS217 4018212 YP_562742.1 CDS Sden_1735 NC_007954.1 2049549 2050430 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2049549..2050430 Shewanella denitrificans OS217 4018213 YP_562743.1 CDS Sden_1736 NC_007954.1 2050437 2051555 D NlpBDapX lipoprotein 2050437..2051555 Shewanella denitrificans OS217 4018214 YP_562744.1 CDS Sden_1737 NC_007954.1 2051771 2052853 D secretion protein HlyD 2051771..2052853 Shewanella denitrificans OS217 4018215 YP_562745.1 CDS Sden_1738 NC_007954.1 2052850 2055945 D acriflavin resistance protein 2052850..2055945 Shewanella denitrificans OS217 4018216 YP_562746.1 CDS Sden_1739 NC_007954.1 2056154 2057368 D Fmu (Sun) 2056154..2057368 Shewanella denitrificans OS217 4018217 YP_562747.1 CDS Sden_1740 NC_007954.1 2057577 2059868 D GGDEF domain-containing protein 2057577..2059868 Shewanella denitrificans OS217 4018218 YP_562748.1 CDS Sden_1741 NC_007954.1 2059989 2061104 R alanine dehydrogenase complement(2059989..2061104) Shewanella denitrificans OS217 4018219 YP_562749.1 CDS Sden_1742 NC_007954.1 2061290 2061790 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2061290..2061790 Shewanella denitrificans OS217 4018220 YP_562750.1 CDS Sden_1743 NC_007954.1 2061947 2064745 D cell divisionFtsK/SpoIIIE 2061947..2064745 Shewanella denitrificans OS217 4018221 YP_562751.1 CDS Sden_1744 NC_007954.1 2064754 2065410 D outer membrane lipoprotein carrier protein LolA 2064754..2065410 Shewanella denitrificans OS217 4018222 YP_562752.1 CDS Sden_1745 NC_007954.1 2065438 2066769 D recombination factor protein RarA 2065438..2066769 Shewanella denitrificans OS217 4018223 YP_562753.1 CDS Sden_1746 NC_007954.1 2066762 2067136 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2066762..2067136 Shewanella denitrificans OS217 4018224 YP_562754.1 CDS Sden_1747 NC_007954.1 2067155 2068441 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2067155..2068441 Shewanella denitrificans OS217 4018225 YP_562755.1 CDS Sden_1748 NC_007954.1 2069128 2070057 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 2069128..2070057 Shewanella denitrificans OS217 4018226 YP_562756.1 CDS Sden_1749 NC_007954.1 2070191 2070775 D hypothetical protein 2070191..2070775 Shewanella denitrificans OS217 4018227 YP_562757.1 CDS Sden_1750 NC_007954.1 2070918 2072108 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2070918..2072108) Shewanella denitrificans OS217 4018228 YP_562758.1 CDS Sden_1751 NC_007954.1 2072489 2073775 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2072489..2073775 Shewanella denitrificans OS217 4018229 YP_562759.1 CDS cmk NC_007954.1 2074020 2074703 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2074020..2074703 Shewanella denitrificans OS217 4018230 YP_562760.2 CDS rpsA NC_007954.1 2074817 2076484 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2074817..2076484 Shewanella denitrificans OS217 4018231 YP_562761.1 CDS ihfB NC_007954.1 2076562 2076849 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2076562..2076849 Shewanella denitrificans OS217 4018232 YP_562762.1 CDS Sden_1755 NC_007954.1 2076979 2077260 D hypothetical protein 2076979..2077260 Shewanella denitrificans OS217 4018233 YP_562763.1 CDS Sden_1756 NC_007954.1 2077261 2078421 D tetratricopeptide repeat protein 2077261..2078421 Shewanella denitrificans OS217 4018234 YP_562764.1 CDS Sden_1757 NC_007954.1 2078501 2079196 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2078501..2079196 Shewanella denitrificans OS217 4018235 YP_562765.1 CDS Sden_1758 NC_007954.1 2079247 2080059 D short chain dehydrogenase 2079247..2080059 Shewanella denitrificans OS217 4018236 YP_562766.1 CDS Sden_1759 NC_007954.1 2080095 2080646 D hypothetical protein 2080095..2080646 Shewanella denitrificans OS217 4018237 YP_562767.1 CDS Sden_1760 NC_007954.1 2080695 2081597 D methyltransferase type 11 2080695..2081597 Shewanella denitrificans OS217 4018238 YP_562768.1 CDS Sden_1761 NC_007954.1 2081797 2083548 D acyl-CoA dehydrogenase-like protein 2081797..2083548 Shewanella denitrificans OS217 4018239 YP_562769.1 CDS Sden_1762 NC_007954.1 2083619 2083906 R YCII-related complement(2083619..2083906) Shewanella denitrificans OS217 4018240 YP_562770.1 CDS Sden_1763 NC_007954.1 2083996 2084337 D helix-turn-helix, HxlR type 2083996..2084337 Shewanella denitrificans OS217 4018241 YP_562771.1 CDS fadE NC_007954.1 2084415 2086862 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2084415..2086862) Shewanella denitrificans OS217 4018242 YP_562772.1 CDS Sden_1765 NC_007954.1 2087111 2087887 D glutamine amidotransferase, class-II 2087111..2087887 Shewanella denitrificans OS217 4018243 YP_562773.1 CDS Sden_1766 NC_007954.1 2088017 2088892 R hypothetical protein complement(2088017..2088892) Shewanella denitrificans OS217 4018244 YP_562774.1 CDS Sden_1767 NC_007954.1 2088965 2089339 R methylated-DNA-(protein)-cysteine S-methyltransferase complement(2088965..2089339) Shewanella denitrificans OS217 4018245 YP_562775.1 CDS Sden_1768 NC_007954.1 2089479 2090186 R hemolysin III family channel protein complement(2089479..2090186) Shewanella denitrificans OS217 4018246 YP_562776.1 CDS Sden_1769 NC_007954.1 2090575 2091486 D hypothetical protein 2090575..2091486 Shewanella denitrificans OS217 4018247 YP_562777.1 CDS Sden_1770 NC_007954.1 2092233 2094293 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2092233..2094293 Shewanella denitrificans OS217 4018249 YP_562778.1 CDS Sden_1771 NC_007954.1 2094296 2096137 D thiamine-phosphate pyrophosphorylase 2094296..2096137 Shewanella denitrificans OS217 4018250 YP_562779.1 CDS Sden_1772 NC_007954.1 2096127 2097035 D UBA/THIF-type NAD/FAD binding fold 2096127..2097035 Shewanella denitrificans OS217 4018251 YP_562780.1 CDS Sden_1773 NC_007954.1 2097053 2097271 D thiamine biosynthesis protein ThiS 2097053..2097271 Shewanella denitrificans OS217 4018252 YP_562781.1 CDS thiG NC_007954.1 2097274 2098074 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2097274..2098074 Shewanella denitrificans OS217 4018253 YP_562782.1 CDS thiH NC_007954.1 2098071 2099180 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2098071..2099180 Shewanella denitrificans OS217 4018254 YP_562783.1 CDS Sden_1776 NC_007954.1 2099324 2099608 D methyl-accepting chemotaxis protein 2099324..2099608 Shewanella denitrificans OS217 4018255 YP_562784.1 CDS Sden_1777 NC_007954.1 2099611 2101014 D SrpA-related protein 2099611..2101014 Shewanella denitrificans OS217 4018256 YP_562785.1 CDS Sden_1778 NC_007954.1 2101119 2102801 R D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2101119..2102801) Shewanella denitrificans OS217 4018257 YP_562786.1 CDS pssA NC_007954.1 2103195 2104508 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2103195..2104508 Shewanella denitrificans OS217 4018258 YP_562787.1 CDS Sden_1780 NC_007954.1 2104508 2105380 D hypothetical protein 2104508..2105380 Shewanella denitrificans OS217 4018259 YP_562788.1 CDS Sden_1781 NC_007954.1 2105540 2105884 D orphan protein 2105540..2105884 Shewanella denitrificans OS217 4018260 YP_562789.1 CDS Sden_1782 NC_007954.1 2105964 2107904 D ATP-dependent DNA helicase RecQ 2105964..2107904 Shewanella denitrificans OS217 4018261 YP_562790.1 CDS Sden_1783 NC_007954.1 2107915 2108190 D hypothetical protein 2107915..2108190 Shewanella denitrificans OS217 4018262 YP_562791.1 CDS Sden_1784 NC_007954.1 2108237 2108716 R peptide methionine sulfoxide reductase complement(2108237..2108716) Shewanella denitrificans OS217 4018263 YP_562792.1 CDS Sden_1785 NC_007954.1 2108983 2110029 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2108983..2110029 Shewanella denitrificans OS217 4018264 YP_562793.1 CDS Sden_1786 NC_007954.1 2110183 2111361 D 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) 2110183..2111361 Shewanella denitrificans OS217 4018265 YP_562794.1 CDS Sden_1787 NC_007954.1 2111365 2112342 D transketolase, central region 2111365..2112342 Shewanella denitrificans OS217 4018266 YP_562795.1 CDS Sden_1788 NC_007954.1 2112352 2113977 D dihydrolipoamide acetyltransferase 2112352..2113977 Shewanella denitrificans OS217 4018267 YP_562796.1 CDS Sden_1789 NC_007954.1 2114100 2115167 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2114100..2115167 Shewanella denitrificans OS217 4018268 YP_562797.1 CDS Sden_1790 NC_007954.1 2115434 2115715 D lipoprotein 2115434..2115715 Shewanella denitrificans OS217 4018269 YP_562798.1 CDS Sden_1791 NC_007954.1 2115813 2116823 R glyceraldehyde-3-phosphate dehydrogenase, type I complement(2115813..2116823) Shewanella denitrificans OS217 4018270 YP_562799.1 CDS Sden_1792 NC_007954.1 2117063 2117923 R hypothetical protein complement(2117063..2117923) Shewanella denitrificans OS217 4018271 YP_562800.1 CDS Sden_1793 NC_007954.1 2118146 2119582 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2118146..2119582 Shewanella denitrificans OS217 4018272 YP_562801.1 CDS Sden_1794 NC_007954.1 2120353 2121315 R response regulator receiver complement(2120353..2121315) Shewanella denitrificans OS217 4018276 YP_562802.1 CDS Sden_1795 NC_007954.1 2121486 2122901 D hypothetical protein 2121486..2122901 Shewanella denitrificans OS217 4018277 YP_562803.1 CDS Sden_1796 NC_007954.1 2122898 2123119 D hypothetical protein 2122898..2123119 Shewanella denitrificans OS217 4018278 YP_562804.1 CDS Sden_1797 NC_007954.1 2124011 2126041 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2124011..2126041 Shewanella denitrificans OS217 4018279 YP_562805.1 CDS Sden_1798 NC_007954.1 2126099 2126455 D regulatory protein, MerR 2126099..2126455 Shewanella denitrificans OS217 4018280 YP_562806.1 CDS Sden_1799 NC_007954.1 2126555 2127133 D NAD(P)H dehydrogenase (quinone) 2126555..2127133 Shewanella denitrificans OS217 4018281 YP_562807.1 CDS Sden_1800 NC_007954.1 2127391 2129274 D alpha amylase, catalytic region 2127391..2129274 Shewanella denitrificans OS217 4018282 YP_562808.1 CDS Sden_1801 NC_007954.1 2129918 2130253 D hypothetical protein 2129918..2130253 Shewanella denitrificans OS217 4018283 YP_562809.1 CDS Sden_1802 NC_007954.1 2130328 2131623 D hypothetical protein 2130328..2131623 Shewanella denitrificans OS217 4018284 YP_562810.1 CDS Sden_1803 NC_007954.1 2132245 2132529 D hypothetical protein 2132245..2132529 Shewanella denitrificans OS217 4018285 YP_562811.1 CDS Sden_1804 NC_007954.1 2132787 2133119 D YCII-related 2132787..2133119 Shewanella denitrificans OS217 4018286 YP_562812.1 CDS Sden_1805 NC_007954.1 2133395 2133733 R DsrC-like protein complement(2133395..2133733) Shewanella denitrificans OS217 4018287 YP_562813.1 CDS Sden_1806 NC_007954.1 2133727 2134023 R DsrH like protein complement(2133727..2134023) Shewanella denitrificans OS217 4018288 YP_562814.1 CDS Sden_1807 NC_007954.1 2134023 2134379 R DsrE-like protein complement(2134023..2134379) Shewanella denitrificans OS217 4018289 YP_562815.1 CDS Sden_1808 NC_007954.1 2134439 2134855 R DsrE-like protein complement(2134439..2134855) Shewanella denitrificans OS217 4018290 YP_562816.1 CDS Sden_1809 NC_007954.1 2134906 2135565 R hypothetical protein complement(2134906..2135565) Shewanella denitrificans OS217 4018291 YP_562817.1 CDS Sden_1810 NC_007954.1 2135717 2136619 R DNA-binding transcriptional regulator complement(2135717..2136619) Shewanella denitrificans OS217 4018292 YP_562818.1 CDS Sden_1811 NC_007954.1 2137387 2137992 R carbonate dehydratase complement(2137387..2137992) Shewanella denitrificans OS217 4018294 YP_562819.1 CDS Sden_1812 NC_007954.1 2138178 2139071 R alpha/beta hydrolase fold complement(2138178..2139071) Shewanella denitrificans OS217 4018295 YP_562820.1 CDS Sden_1813 NC_007954.1 2139092 2139808 R peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins complement(2139092..2139808) Shewanella denitrificans OS217 4018296 YP_562821.1 CDS Sden_1814 NC_007954.1 2139802 2140932 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2139802..2140932) Shewanella denitrificans OS217 4018297 YP_562822.1 CDS Sden_1815 NC_007954.1 2140929 2141279 R hypothetical protein complement(2140929..2141279) Shewanella denitrificans OS217 4018298 YP_562823.1 CDS Sden_1816 NC_007954.1 2141336 2141845 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit complement(2141336..2141845) Shewanella denitrificans OS217 4018299 YP_562824.1 CDS Sden_1817 NC_007954.1 2141902 2143638 R phosphoenolpyruvate-protein phosphotransferase complement(2141902..2143638) Shewanella denitrificans OS217 4018300 YP_562825.1 CDS Sden_1818 NC_007954.1 2143712 2143969 R phosphotransferase system, HPr complement(2143712..2143969) Shewanella denitrificans OS217 4018301 YP_562826.1 CDS Sden_1819 NC_007954.1 2144232 2145023 D hypothetical protein 2144232..2145023 Shewanella denitrificans OS217 4018302 YP_562827.1 CDS Sden_1820 NC_007954.1 2145148 2146185 D periplasmic binding protein/LacI transcriptional regulator 2145148..2146185 Shewanella denitrificans OS217 4018303 YP_562828.1 CDS Sden_1821 NC_007954.1 2146317 2147282 D hypothetical protein 2146317..2147282 Shewanella denitrificans OS217 4018304 YP_562829.1 CDS Sden_1822 NC_007954.1 2147305 2147646 R hypothetical protein complement(2147305..2147646) Shewanella denitrificans OS217 4018305 YP_562830.1 CDS Sden_1823 NC_007954.1 2148009 2149055 R Glu/Leu/Phe/Val dehydrogenase, dimerisation region complement(2148009..2149055) Shewanella denitrificans OS217 4018306 YP_562831.1 CDS Sden_1824 NC_007954.1 2149289 2149783 D hypothetical protein 2149289..2149783 Shewanella denitrificans OS217 4018307 YP_562832.1 CDS Sden_1825 NC_007954.1 2149963 2151093 R cupin 4 complement(2149963..2151093) Shewanella denitrificans OS217 4018308 YP_562833.1 CDS Sden_1826 NC_007954.1 2151157 2152527 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2151157..2152527) Shewanella denitrificans OS217 4018309 YP_562834.1 CDS Sden_1827 NC_007954.1 2152569 2153204 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2152569..2153204) Shewanella denitrificans OS217 4018310 YP_562835.1 CDS mnmA NC_007954.1 2153208 2154341 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2153208..2154341) Shewanella denitrificans OS217 4018311 YP_562836.1 CDS Sden_1829 NC_007954.1 2154776 2155810 R GGDEF domain-containing protein complement(2154776..2155810) Shewanella denitrificans OS217 4018312 YP_562837.1 CDS Sden_1830 NC_007954.1 2156080 2156808 R pseudouridine synthase, Rsu complement(2156080..2156808) Shewanella denitrificans OS217 4018313 YP_562838.1 CDS Sden_1831 NC_007954.1 2157091 2159313 D isocitrate dehydrogenase, NADP-dependent 2157091..2159313 Shewanella denitrificans OS217 4018314 YP_562839.1 CDS Sden_1832 NC_007954.1 2159401 2159604 R CspD, cold shock complement(2159401..2159604) Shewanella denitrificans OS217 4018315 YP_562840.1 CDS clpS NC_007954.1 2159798 2160106 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2159798..2160106 Shewanella denitrificans OS217 4018316 YP_562841.1 CDS Sden_1834 NC_007954.1 2160146 2162407 D ATPase AAA-2 2160146..2162407 Shewanella denitrificans OS217 4018317 YP_562842.1 CDS infA NC_007954.1 2162580 2162798 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2162580..2162798) Shewanella denitrificans OS217 4018318 YP_562843.1 CDS Sden_1836 NC_007954.1 2162895 2163596 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2162895..2163596) Shewanella denitrificans OS217 4018319 YP_562844.1 CDS aat NC_007954.1 2163586 2164287 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2163586..2164287) Shewanella denitrificans OS217 4018320 YP_562845.1 CDS Sden_1838 NC_007954.1 2164341 2164835 D 17 kDa surface antigen 2164341..2164835 Shewanella denitrificans OS217 4018321 YP_562846.1 CDS Sden_1839 NC_007954.1 2164910 2166703 R peptidase M28 complement(2164910..2166703) Shewanella denitrificans OS217 4018322 YP_562847.1 CDS Sden_1840 NC_007954.1 2166761 2167507 R UMP phosphatase complement(2166761..2167507) Shewanella denitrificans OS217 4018323 YP_562848.1 CDS Sden_1841 NC_007954.1 2167797 2168768 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(2167797..2168768) Shewanella denitrificans OS217 4018324 YP_562849.1 CDS Sden_1842 NC_007954.1 2168877 2169806 R with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE complement(2168877..2169806) Shewanella denitrificans OS217 4018325 YP_562850.1 CDS Sden_1843 NC_007954.1 2169991 2170743 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator complement(2169991..2170743) Shewanella denitrificans OS217 4018326 YP_562851.1 CDS Sden_1844 NC_007954.1 2170799 2171491 R hypothetical protein complement(2170799..2171491) Shewanella denitrificans OS217 4018327 YP_562852.1 CDS Sden_1845 NC_007954.1 2171484 2171753 R cytochrome oxidase maturation protein, cbb3-type complement(2171484..2171753) Shewanella denitrificans OS217 4018328 YP_562853.1 CDS Sden_1846 NC_007954.1 2171750 2174191 R heavy metal translocating P-type ATPase complement(2171750..2174191) Shewanella denitrificans OS217 4018329 YP_562854.1 CDS Sden_1847 NC_007954.1 2174195 2174671 R hypothetical protein complement(2174195..2174671) Shewanella denitrificans OS217 4018330 YP_562855.1 CDS Sden_1848 NC_007954.1 2174787 2175743 R cytochrome c oxidase, cbb3-type, subunit III complement(2174787..2175743) Shewanella denitrificans OS217 4018331 YP_562856.1 CDS Sden_1849 NC_007954.1 2175743 2175919 R Cbb3-type cytochrome oxidase component complement(2175743..2175919) Shewanella denitrificans OS217 4018332 YP_562857.1 CDS Sden_1850 NC_007954.1 2175930 2176544 R cytochrome c oxidase, cbb3-type, subunit II complement(2175930..2176544) Shewanella denitrificans OS217 4018333 YP_562858.1 CDS Sden_1851 NC_007954.1 2176556 2177989 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(2176556..2177989) Shewanella denitrificans OS217 4018334 YP_562859.1 CDS Sden_1852 NC_007954.1 2178255 2178773 D hypothetical protein 2178255..2178773 Shewanella denitrificans OS217 4018335 YP_562860.1 CDS Sden_1853 NC_007954.1 2178837 2180420 R metal-dependent phosphohydrolase complement(2178837..2180420) Shewanella denitrificans OS217 4018336 YP_562861.1 CDS Sden_1854 NC_007954.1 2180582 2180923 D hypothetical protein 2180582..2180923 Shewanella denitrificans OS217 4018337 YP_562862.1 CDS Sden_1855 NC_007954.1 2181138 2182460 D phage integrase 2181138..2182460 Shewanella denitrificans OS217 4018338 YP_562863.1 CDS Sden_1856 NC_007954.1 2182842 2183864 R hypothetical protein complement(2182842..2183864) Shewanella denitrificans OS217 4018339 YP_562864.1 CDS Sden_1857 NC_007954.1 2184322 2185779 R lytic transglycosylase, catalytic complement(2184322..2185779) Shewanella denitrificans OS217 4018340 YP_562865.1 CDS Sden_1859 NC_007954.1 2186123 2186806 R hypothetical protein complement(2186123..2186806) Shewanella denitrificans OS217 4018342 YP_562866.1 CDS Sden_1860 NC_007954.1 2186790 2187179 R hypothetical protein complement(2186790..2187179) Shewanella denitrificans OS217 4018343 YP_562867.1 CDS Sden_1861 NC_007954.1 2187490 2188380 D hypothetical protein 2187490..2188380 Shewanella denitrificans OS217 4018344 YP_562868.1 CDS Sden_1862 NC_007954.1 2189433 2191328 D GGDEF domain-containing protein 2189433..2191328 Shewanella denitrificans OS217 4018350 YP_562869.1 CDS Sden_1863 NC_007954.1 2191512 2192090 D Na(+)-translocating NADH-quinone reductase subunit E 2191512..2192090 Shewanella denitrificans OS217 4018351 YP_562870.1 CDS Sden_1864 NC_007954.1 2192092 2192709 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2192092..2192709 Shewanella denitrificans OS217 4018352 YP_562871.1 CDS Sden_1865 NC_007954.1 2192703 2194898 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2192703..2194898 Shewanella denitrificans OS217 4018353 YP_562872.1 CDS rnfD NC_007954.1 2194902 2195954 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2194902..2195954 Shewanella denitrificans OS217 4018354 YP_562873.1 CDS Sden_1867 NC_007954.1 2195954 2196607 D electron transport complex, RnfABCDGE type, G subunit 2195954..2196607 Shewanella denitrificans OS217 4018355 YP_562874.1 CDS Sden_1868 NC_007954.1 2196604 2197299 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2196604..2197299 Shewanella denitrificans OS217 4018356 YP_562875.1 CDS Sden_1869 NC_007954.1 2197307 2197939 D endonuclease III 2197307..2197939 Shewanella denitrificans OS217 4018357 YP_562876.1 CDS Sden_1870 NC_007954.1 2198007 2198684 R hypothetical protein complement(2198007..2198684) Shewanella denitrificans OS217 4018358 YP_562877.1 CDS Sden_1871 NC_007954.1 2198858 2199091 D Iron-sulfur cluster loop 2198858..2199091 Shewanella denitrificans OS217 4018359 YP_562878.1 CDS Sden_1872 NC_007954.1 2199200 2199445 R hypothetical protein complement(2199200..2199445) Shewanella denitrificans OS217 4018360 YP_562879.1 CDS Sden_1873 NC_007954.1 2199504 2199914 D glyoxalase I 2199504..2199914 Shewanella denitrificans OS217 4018361 YP_562880.1 CDS Sden_1874 NC_007954.1 2199950 2200459 R GCN5-related N-acetyltransferase complement(2199950..2200459) Shewanella denitrificans OS217 4018362 YP_562881.1 CDS Sden_1875 NC_007954.1 2200598 2201572 D regulatory protein, LysR 2200598..2201572 Shewanella denitrificans OS217 4018363 YP_562882.1 CDS Sden_1876 NC_007954.1 2201637 2202317 R short-chain dehydrogenase/reductase SDR complement(2201637..2202317) Shewanella denitrificans OS217 4018364 YP_562883.1 CDS Sden_1877 NC_007954.1 2202450 2205149 D GCN5-related N-acetyltransferase 2202450..2205149 Shewanella denitrificans OS217 4018365 YP_562884.1 CDS Sden_1878 NC_007954.1 2205174 2206193 R GGDEF domain-containing protein complement(2205174..2206193) Shewanella denitrificans OS217 4018366 YP_562885.1 CDS Sden_1879 NC_007954.1 2206400 2207341 R integrase catalytic subunit complement(2206400..2207341) Shewanella denitrificans OS217 4018367 YP_562886.1 CDS Sden_1880 NC_007954.1 2207520 2208212 D hypothetical protein 2207520..2208212 Shewanella denitrificans OS217 4018368 YP_562887.1 CDS Sden_1881 NC_007954.1 2208233 2208745 R hypothetical protein complement(2208233..2208745) Shewanella denitrificans OS217 4018369 YP_562888.1 CDS Sden_1882 NC_007954.1 2209185 2210036 R hypothetical protein complement(2209185..2210036) Shewanella denitrificans OS217 4018370 YP_562889.1 CDS ruvB NC_007954.1 2210739 2211752 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2210739..2211752) Shewanella denitrificans OS217 4018371 YP_562890.1 CDS ruvA NC_007954.1 2211863 2212474 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2211863..2212474) Shewanella denitrificans OS217 4018372 YP_562891.1 CDS ruvC NC_007954.1 2212471 2212992 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2212471..2212992) Shewanella denitrificans OS217 4018373 YP_562892.1 CDS Sden_1886 NC_007954.1 2212992 2213738 R hypothetical protein complement(2212992..2213738) Shewanella denitrificans OS217 4018374 YP_562893.1 CDS aspS NC_007954.1 2213833 2215614 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2213833..2215614) Shewanella denitrificans OS217 4018375 YP_562894.1 CDS Sden_1888 NC_007954.1 2215834 2218626 R GGDEF domain-containing protein complement(2215834..2218626) Shewanella denitrificans OS217 4018376 YP_562895.1 CDS Sden_1889 NC_007954.1 2218886 2219620 D methyltransferase 2218886..2219620 Shewanella denitrificans OS217 4018377 YP_562896.1 CDS Sden_1890 NC_007954.1 2219617 2220609 D methyltransferase 2219617..2220609 Shewanella denitrificans OS217 4018378 YP_562897.1 CDS Sden_1891 NC_007954.1 2220633 2221406 D hypothetical protein 2220633..2221406 Shewanella denitrificans OS217 4018379 YP_562898.1 CDS Sden_1892 NC_007954.1 2221415 2222923 D gonadoliberin III-related protein 2221415..2222923 Shewanella denitrificans OS217 4018380 YP_562899.1 CDS Sden_1893 NC_007954.1 2222923 2223879 D Alpha-L-glutamate ligase-related protein 2222923..2223879 Shewanella denitrificans OS217 4018381 YP_562900.1 CDS Sden_1894 NC_007954.1 2223890 2225641 D hypothetical protein 2223890..2225641 Shewanella denitrificans OS217 4018382 YP_562901.1 CDS Sden_1895 NC_007954.1 2225736 2226734 D hypothetical protein 2225736..2226734 Shewanella denitrificans OS217 4018383 YP_562902.1 CDS Sden_1896 NC_007954.1 2226869 2227354 R hypothetical protein complement(2226869..2227354) Shewanella denitrificans OS217 4018384 YP_562903.1 CDS Sden_1897 NC_007954.1 2227469 2228959 R binding-protein-dependent transport systems inner membrane component complement(2227469..2228959) Shewanella denitrificans OS217 4018385 YP_562904.1 CDS Sden_1898 NC_007954.1 2228949 2229659 R ABC transporter related complement(2228949..2229659) Shewanella denitrificans OS217 4018386 YP_562905.1 CDS Sden_1899 NC_007954.1 2229659 2230513 R phosphonate-binding periplasmic protein complement(2229659..2230513) Shewanella denitrificans OS217 4018387 YP_562906.1 CDS Sden_1900 NC_007954.1 2230843 2232858 R NADH:flavin oxidoreductase/NADH oxidase complement(2230843..2232858) Shewanella denitrificans OS217 4018388 YP_562907.1 CDS Sden_1901 NC_007954.1 2233023 2234864 D signal peptide peptidase SppA, 67K type 2233023..2234864 Shewanella denitrificans OS217 4018389 YP_562908.1 CDS ansA NC_007954.1 2234978 2236006 D converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 2234978..2236006 Shewanella denitrificans OS217 4018390 YP_562909.1 CDS Sden_1903 NC_007954.1 2236091 2236372 R hypothetical protein complement(2236091..2236372) Shewanella denitrificans OS217 4018391 YP_562910.1 CDS Sden_1904 NC_007954.1 2236369 2236686 R hypothetical protein complement(2236369..2236686) Shewanella denitrificans OS217 4018392 YP_562911.1 CDS Sden_1905 NC_007954.1 2236689 2237819 R peptidase M14, carboxypeptidase A complement(2236689..2237819) Shewanella denitrificans OS217 4018393 YP_562912.1 CDS Sden_1906 NC_007954.1 2237943 2238689 R transcriptional regulatory protein-like protein complement(2237943..2238689) Shewanella denitrificans OS217 4018394 YP_562913.1 CDS Sden_1907 NC_007954.1 2238822 2240651 R hypothetical protein complement(2238822..2240651) Shewanella denitrificans OS217 4018395 YP_562914.1 CDS Sden_1908 NC_007954.1 2240914 2241717 D lipolytic enzyme, G-D-S-L 2240914..2241717 Shewanella denitrificans OS217 4018396 YP_562915.1 CDS Sden_1909 NC_007954.1 2242130 2243017 R abortive infection protein complement(2242130..2243017) Shewanella denitrificans OS217 4018397 YP_562916.1 CDS Sden_1910 NC_007954.1 2243837 2244460 R hypothetical protein complement(2243837..2244460) Shewanella denitrificans OS217 4018399 YP_562917.1 CDS Sden_1911 NC_007954.1 2244946 2246997 R peptidase S9, prolyl oligopeptidase active site region complement(2244946..2246997) Shewanella denitrificans OS217 4018400 YP_562918.1 CDS Sden_1912 NC_007954.1 2247175 2248737 R tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit complement(2247175..2248737) Shewanella denitrificans OS217 4018401 YP_562919.1 CDS Sden_1913 NC_007954.1 2248892 2250421 D para-aminobenzoate synthase, component I 2248892..2250421 Shewanella denitrificans OS217 4018402 YP_562920.1 CDS Sden_1914 NC_007954.1 2250617 2252404 R hypothetical protein complement(2250617..2252404) Shewanella denitrificans OS217 4018403 YP_562921.1 CDS Sden_1915 NC_007954.1 2252860 2254308 R hypothetical protein complement(2252860..2254308) Shewanella denitrificans OS217 4018404 YP_562922.1 CDS Sden_1916 NC_007954.1 2254525 2255349 R cyclic nucleotide-binding complement(2254525..2255349) Shewanella denitrificans OS217 4018405 YP_562923.1 CDS Sden_1917 NC_007954.1 2255352 2256263 R response regulator receiver complement(2255352..2256263) Shewanella denitrificans OS217 4018406 YP_562924.1 CDS Sden_1918 NC_007954.1 2256323 2259130 R ATP-binding region, ATPase-like protein complement(2256323..2259130) Shewanella denitrificans OS217 4018407 YP_562925.1 CDS Sden_1919 NC_007954.1 2259885 2260592 R hypothetical protein complement(2259885..2260592) Shewanella denitrificans OS217 4018408 YP_562926.1 CDS Sden_1920 NC_007954.1 2260583 2261977 R hypothetical protein complement(2260583..2261977) Shewanella denitrificans OS217 4018409 YP_562927.1 CDS Sden_1921 NC_007954.1 2262134 2263111 R hypothetical protein complement(2262134..2263111) Shewanella denitrificans OS217 4018410 YP_562928.1 CDS Sden_1922 NC_007954.1 2263249 2263833 R hypothetical protein complement(2263249..2263833) Shewanella denitrificans OS217 4018411 YP_562929.1 CDS Sden_1923 NC_007954.1 2263847 2279416 R peptidoglycan-binding LysM complement(2263847..2279416) Shewanella denitrificans OS217 4018412 YP_562930.1 CDS Sden_1924 NC_007954.1 2279501 2280901 R triple helix repeat-containing collagen complement(2279501..2280901) Shewanella denitrificans OS217 4018413 YP_562931.1 CDS Sden_1925 NC_007954.1 2280898 2282376 R triple helix repeat-containing collagen complement(2280898..2282376) Shewanella denitrificans OS217 4018414 YP_562932.1 CDS Sden_1926 NC_007954.1 2282376 2284124 R triple helix repeat-containing collagen complement(2282376..2284124) Shewanella denitrificans OS217 4018415 YP_562933.1 CDS Sden_1927 NC_007954.1 2284233 2285378 R tetratricopeptide TPR_2 complement(2284233..2285378) Shewanella denitrificans OS217 4018416 YP_562934.1 CDS Sden_1928 NC_007954.1 2285898 2286785 R transposase, IS4 complement(2285898..2286785) Shewanella denitrificans OS217 4018417 YP_562935.1 CDS Sden_1929 NC_007954.1 2287176 2287697 R hypothetical protein complement(2287176..2287697) Shewanella denitrificans OS217 4018418 YP_562936.1 CDS Sden_1930 NC_007954.1 2288107 2288427 R glyoxalase/bleomycin resistance protein/dioxygenase complement(2288107..2288427) Shewanella denitrificans OS217 4018419 YP_562937.1 CDS Sden_1931 NC_007954.1 2288471 2289295 R helix-turn-helix, AraC type complement(2288471..2289295) Shewanella denitrificans OS217 4018420 YP_562938.1 CDS Sden_1932 NC_007954.1 2289437 2289787 R glyoxalase/bleomycin resistance protein/dioxygenase complement(2289437..2289787) Shewanella denitrificans OS217 4018421 YP_562939.1 CDS Sden_1933 NC_007954.1 2289831 2290049 R hypothetical protein complement(2289831..2290049) Shewanella denitrificans OS217 4018422 YP_562940.1 CDS Sden_1934 NC_007954.1 2290738 2291088 R hypothetical protein complement(2290738..2291088) Shewanella denitrificans OS217 4018423 YP_562941.1 CDS Sden_1935 NC_007954.1 2291516 2293081 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2291516..2293081) Shewanella denitrificans OS217 4018424 YP_562942.1 CDS Sden_1936 NC_007954.1 2293340 2293564 R hypothetical protein complement(2293340..2293564) Shewanella denitrificans OS217 4018425 YP_562943.1 CDS fabG NC_007954.1 2293737 2294495 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2293737..2294495) Shewanella denitrificans OS217 4018426 YP_562944.1 CDS Sden_1938 NC_007954.1 2294538 2295458 R 3-hydroxyisobutyrate dehydrogenase complement(2294538..2295458) Shewanella denitrificans OS217 4018427 YP_562945.1 CDS Sden_1939 NC_007954.1 2295523 2296647 R enoyl-CoA hydratase/isomerase complement(2295523..2296647) Shewanella denitrificans OS217 4018428 YP_562946.1 CDS Sden_1940 NC_007954.1 2296647 2297429 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2296647..2297429) Shewanella denitrificans OS217 4018429 YP_562947.1 CDS Sden_1941 NC_007954.1 2297521 2298678 R butyryl-CoA dehydrogenase complement(2297521..2298678) Shewanella denitrificans OS217 4018430 YP_562948.1 CDS Sden_1942 NC_007954.1 2298806 2300311 R methylmalonate-semialdehyde dehydrogenase complement(2298806..2300311) Shewanella denitrificans OS217 4018431 YP_562949.1 CDS Sden_1943 NC_007954.1 2300521 2301711 R Acetyl-CoA C-acetyltransferase complement(2300521..2301711) Shewanella denitrificans OS217 4018432 YP_562950.1 CDS Sden_1944 NC_007954.1 2301954 2302460 R hypothetical protein complement(2301954..2302460) Shewanella denitrificans OS217 4018433 YP_562951.1 CDS Sden_1945 NC_007954.1 2302607 2303620 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(2302607..2303620) Shewanella denitrificans OS217 4018434 YP_562952.1 CDS Sden_1946 NC_007954.1 2303975 2305351 D L-serine dehydratase 1 2303975..2305351 Shewanella denitrificans OS217 4018435 YP_562953.1 CDS Sden_1947 NC_007954.1 2305429 2306520 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2305429..2306520) Shewanella denitrificans OS217 4018436 YP_562954.1 CDS Sden_1948 NC_007954.1 2306685 2309411 R DNA gyrase, A subunit complement(2306685..2309411) Shewanella denitrificans OS217 4018437 YP_562955.1 CDS Sden_1949 NC_007954.1 2309782 2310510 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2309782..2310510 Shewanella denitrificans OS217 4018438 YP_562956.1 CDS Sden_1950 NC_007954.1 2310510 2311196 D HAD family hydrolase 2310510..2311196 Shewanella denitrificans OS217 4018439 YP_562957.1 CDS Sden_1951 NC_007954.1 2311898 2312992 R hypothetical protein complement(2311898..2312992) Shewanella denitrificans OS217 4018440 YP_562958.1 CDS Sden_1952 NC_007954.1 2314632 2316920 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2314632..2316920 Shewanella denitrificans OS217 4018441 YP_562959.1 CDS nrdB NC_007954.1 2316985 2318115 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2316985..2318115 Shewanella denitrificans OS217 4018442 YP_562960.1 CDS Sden_1954 NC_007954.1 2318105 2318518 D ferredoxin 2318105..2318518 Shewanella denitrificans OS217 4018443 YP_562961.1 CDS Sden_1955 NC_007954.1 2318552 2318926 R hypothetical protein complement(2318552..2318926) Shewanella denitrificans OS217 4018444 YP_562962.1 CDS Sden_1956 NC_007954.1 2319124 2319726 D NUDIX hydrolase 2319124..2319726 Shewanella denitrificans OS217 4018445 YP_562963.1 CDS Sden_1957 NC_007954.1 2319691 2320026 R hypothetical protein complement(2319691..2320026) Shewanella denitrificans OS217 4018446 YP_562964.1 CDS asnC NC_007954.1 2320270 2321670 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2320270..2321670 Shewanella denitrificans OS217 4018447 YP_562965.1 CDS Sden_1959 NC_007954.1 2321894 2322544 R hypothetical protein complement(2321894..2322544) Shewanella denitrificans OS217 4018448 YP_562966.1 CDS Sden_1960 NC_007954.1 2322848 2323807 D hypothetical protein 2322848..2323807 Shewanella denitrificans OS217 4018449 YP_562967.1 CDS Sden_1961 NC_007954.1 2324016 2325620 D ABC transporter related 2324016..2325620 Shewanella denitrificans OS217 4018450 YP_562968.1 CDS Sden_1962 NC_007954.1 2325955 2326365 D CBS domain-containing protein 2325955..2326365 Shewanella denitrificans OS217 4018451 YP_562969.1 CDS Sden_1963 NC_007954.1 2326427 2328034 R chemotaxis sensory transducer complement(2326427..2328034) Shewanella denitrificans OS217 4018452 YP_562970.1 CDS Sden_1964 NC_007954.1 2328308 2329252 R hypothetical protein complement(2328308..2329252) Shewanella denitrificans OS217 4018453 YP_562971.1 CDS Sden_1965 NC_007954.1 2329492 2329803 R hypothetical protein complement(2329492..2329803) Shewanella denitrificans OS217 4018454 YP_562972.1 CDS Sden_1966 NC_007954.1 2329955 2331703 R phosphoglucomutase/phosphomannomutase alpha/beta/subunit complement(2329955..2331703) Shewanella denitrificans OS217 4018455 YP_562973.1 CDS Sden_1967 NC_007954.1 2331943 2333040 D cation diffusion facilitator family transporter 2331943..2333040 Shewanella denitrificans OS217 4018456 YP_562974.1 CDS Sden_1968 NC_007954.1 2333341 2333979 D cytochrome c oxidase, subunit III 2333341..2333979 Shewanella denitrificans OS217 4018457 YP_562975.1 CDS Sden_1969 NC_007954.1 2334039 2334350 D hypothetical protein 2334039..2334350 Shewanella denitrificans OS217 4018458 YP_562976.1 CDS Sden_1970 NC_007954.1 2334564 2336180 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 2334564..2336180 Shewanella denitrificans OS217 4018459 YP_562977.1 CDS Sden_1971 NC_007954.1 2336259 2336990 R hypothetical protein complement(2336259..2336990) Shewanella denitrificans OS217 4018460 YP_562978.1 CDS Sden_1972 NC_007954.1 2337304 2337657 D hypothetical protein 2337304..2337657 Shewanella denitrificans OS217 4018461 YP_562979.1 CDS Sden_1973 NC_007954.1 2337689 2338894 D lanthionine synthetase C-like protein 2337689..2338894 Shewanella denitrificans OS217 4018462 YP_562980.1 CDS Sden_1974 NC_007954.1 2338961 2339278 D hypothetical protein 2338961..2339278 Shewanella denitrificans OS217 4018463 YP_562981.1 CDS Sden_1975 NC_007954.1 2339695 2340123 D hypothetical protein 2339695..2340123 Shewanella denitrificans OS217 4018464 YP_562982.1 CDS Sden_1976 NC_007954.1 2340141 2340434 R hypothetical protein complement(2340141..2340434) Shewanella denitrificans OS217 4018465 YP_562983.1 CDS Sden_1977 NC_007954.1 2340459 2341190 R cytochrome c oxidase, subunit III complement(2340459..2341190) Shewanella denitrificans OS217 4018466 YP_562984.1 CDS Sden_1978 NC_007954.1 2341199 2342056 R ATPase complement(2341199..2342056) Shewanella denitrificans OS217 4018467 YP_562985.1 CDS Sden_1979 NC_007954.1 2342145 2344088 R von Willebrand factor, type A complement(2342145..2344088) Shewanella denitrificans OS217 4018468 YP_562986.1 CDS Sden_1980 NC_007954.1 2344290 2345705 R cytochrome c oxidase, subunit I complement(2344290..2345705) Shewanella denitrificans OS217 4018469 YP_562987.1 CDS Sden_1981 NC_007954.1 2345721 2346167 R nitric-oxide reductase complement(2345721..2346167) Shewanella denitrificans OS217 4018470 YP_562988.1 CDS Sden_1982 NC_007954.1 2346658 2347812 D hypothetical protein 2346658..2347812 Shewanella denitrificans OS217 4018471 YP_562989.1 CDS Sden_1983 NC_007954.1 2347968 2349278 D DNA repair ATPase 2347968..2349278 Shewanella denitrificans OS217 4018472 YP_562990.1 CDS Sden_1984 NC_007954.1 2349278 2349619 D hypothetical protein 2349278..2349619 Shewanella denitrificans OS217 4018473 YP_562991.1 CDS Sden_1985 NC_007954.1 2350272 2351978 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2350272..2351978) Shewanella denitrificans OS217 4018474 YP_562992.1 CDS Sden_1986 NC_007954.1 2352209 2352970 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(2352209..2352970) Shewanella denitrificans OS217 4018475 YP_562993.1 CDS Sden_1987 NC_007954.1 2353298 2354059 D alpha/beta hydrolase fold 2353298..2354059 Shewanella denitrificans OS217 4018476 YP_562994.1 CDS Sden_1988 NC_007954.1 2354330 2354551 D hypothetical protein 2354330..2354551 Shewanella denitrificans OS217 4018477 YP_562995.1 CDS Sden_1989 NC_007954.1 2354561 2354833 D LexA regulated protein 2354561..2354833 Shewanella denitrificans OS217 4018478 YP_562996.1 CDS Sden_1990 NC_007954.1 2354886 2355413 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2354886..2355413 Shewanella denitrificans OS217 4018479 YP_562997.1 CDS Sden_1991 NC_007954.1 2355508 2356731 D hypothetical protein 2355508..2356731 Shewanella denitrificans OS217 4018480 YP_562998.1 CDS Sden_1992 NC_007954.1 2356734 2357294 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2356734..2357294 Shewanella denitrificans OS217 4018481 YP_562999.1 CDS Sden_1993 NC_007954.1 2357715 2358929 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2357715..2358929 Shewanella denitrificans OS217 4018482 YP_563000.1 CDS Sden_1994 NC_007954.1 2359039 2359626 D hypothetical protein 2359039..2359626 Shewanella denitrificans OS217 4018483 YP_563001.1 CDS Sden_1995 NC_007954.1 2359795 2361138 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2359795..2361138 Shewanella denitrificans OS217 4018484 YP_563002.1 CDS Sden_1996 NC_007954.1 2361240 2363807 R GGDEF domain-containing protein complement(2361240..2363807) Shewanella denitrificans OS217 4018485 YP_563003.1 CDS Sden_1997 NC_007954.1 2363804 2364124 R response regulator receiver complement(2363804..2364124) Shewanella denitrificans OS217 4018486 YP_563004.1 CDS Sden_1998 NC_007954.1 2364141 2366711 R ATP-binding region, ATPase-like protein complement(2364141..2366711) Shewanella denitrificans OS217 4018487 YP_563005.1 CDS Sden_1999 NC_007954.1 2367165 2368043 D GGDEF domain-containing protein 2367165..2368043 Shewanella denitrificans OS217 4018488 YP_563006.1 CDS Sden_2000 NC_007954.1 2368315 2370939 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2368315..2370939 Shewanella denitrificans OS217 4018489 YP_563007.1 CDS Sden_2001 NC_007954.1 2371194 2371802 D hypothetical protein 2371194..2371802 Shewanella denitrificans OS217 4018490 YP_563008.1 CDS Sden_2002 NC_007954.1 2372002 2374185 D alpha-glucosidase 2372002..2374185 Shewanella denitrificans OS217 4018491 YP_563009.1 CDS Sden_2003 NC_007954.1 2374579 2376171 D major facilitator transporter 2374579..2376171 Shewanella denitrificans OS217 4018492 YP_563010.1 CDS Sden_2004 NC_007954.1 2376259 2378784 D glucan 1,4-alpha-glucosidase 2376259..2378784 Shewanella denitrificans OS217 4018493 YP_563011.1 CDS Sden_2005 NC_007954.1 2378963 2379319 D glutaredoxin 2378963..2379319 Shewanella denitrificans OS217 4018494 YP_563012.1 CDS Sden_2006 NC_007954.1 2379385 2379801 R regulatory protein, MarR complement(2379385..2379801) Shewanella denitrificans OS217 4018495 YP_563013.1 CDS Sden_2007 NC_007954.1 2379838 2380386 R hypothetical protein complement(2379838..2380386) Shewanella denitrificans OS217 4018496 YP_563014.1 CDS Sden_2008 NC_007954.1 2380383 2383433 R FAD linked oxidase-like protein complement(2380383..2383433) Shewanella denitrificans OS217 4018497 YP_563015.1 CDS Sden_2009 NC_007954.1 2383567 2385942 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2383567..2385942) Shewanella denitrificans OS217 4018498 YP_563016.1 CDS Sden_2010 NC_007954.1 2386067 2386879 D hypothetical protein 2386067..2386879 Shewanella denitrificans OS217 4018499 YP_563017.1 CDS Sden_2011 NC_007954.1 2387074 2388141 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2387074..2388141 Shewanella denitrificans OS217 4018500 YP_563018.1 CDS Sden_2012 NC_007954.1 2388225 2388719 R hypothetical protein complement(2388225..2388719) Shewanella denitrificans OS217 4018501 YP_563019.1 CDS Sden_2013 NC_007954.1 2389592 2390653 D pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2389592..2390653 Shewanella denitrificans OS217 4018505 YP_563020.1 CDS Sden_2014 NC_007954.1 2390787 2391455 R radical activating enzyme complement(2390787..2391455) Shewanella denitrificans OS217 4018506 YP_563021.1 CDS Sden_2015 NC_007954.1 2391630 2392328 D YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2391630..2392328 Shewanella denitrificans OS217 4018507 YP_563022.1 CDS Sden_2016 NC_007954.1 2392312 2392968 D rhomboid-like protein 2392312..2392968 Shewanella denitrificans OS217 4018508 YP_563023.1 CDS Sden_2017 NC_007954.1 2393098 2394420 R hypothetical protein complement(2393098..2394420) Shewanella denitrificans OS217 4018509 YP_563024.1 CDS Sden_2018 NC_007954.1 2394431 2395159 R DNA polymerase III, epsilon subunit complement(2394431..2395159) Shewanella denitrificans OS217 4018510 YP_563025.1 CDS rnhA NC_007954.1 2395224 2395703 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2395224..2395703 Shewanella denitrificans OS217 4018511 YP_563026.1 CDS Sden_2020 NC_007954.1 2395688 2396407 R methyltransferase type 11 complement(2395688..2396407) Shewanella denitrificans OS217 4018512 YP_563027.1 CDS Sden_2021 NC_007954.1 2396508 2397284 D hydroxyacylglutathione hydrolase 2396508..2397284 Shewanella denitrificans OS217 4018513 YP_563028.1 CDS Sden_2022 NC_007954.1 2397418 2398974 D lytic transglycosylase, catalytic 2397418..2398974 Shewanella denitrificans OS217 4018514 YP_563029.1 CDS Sden_2023 NC_007954.1 2399119 2399733 R intracellular proteinase inhibitor domain-containing protein complement(2399119..2399733) Shewanella denitrificans OS217 4018515 YP_563030.1 CDS Sden_2024 NC_007954.1 2399733 2401577 R AsmA complement(2399733..2401577) Shewanella denitrificans OS217 4018516 YP_563031.1 CDS Sden_2025 NC_007954.1 2401638 2402171 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2401638..2402171) Shewanella denitrificans OS217 4018517 YP_563032.1 CDS Sden_2026 NC_007954.1 2402389 2402703 D hypothetical protein 2402389..2402703 Shewanella denitrificans OS217 4018518 YP_563033.1 CDS Sden_2027 NC_007954.1 2402929 2404176 R glucose/galactose transporter complement(2402929..2404176) Shewanella denitrificans OS217 4018519 YP_563034.1 CDS Sden_2028 NC_007954.1 2404314 2405987 R alpha amylase, catalytic region complement(2404314..2405987) Shewanella denitrificans OS217 4018520 YP_563035.1 CDS Sden_2029 NC_007954.1 2406467 2409193 D TonB-dependent receptor 2406467..2409193 Shewanella denitrificans OS217 4018521 YP_563036.1 CDS Sden_2030 NC_007954.1 2409255 2410748 D tryptophan halogenase 2409255..2410748 Shewanella denitrificans OS217 4018522 YP_563037.1 CDS Sden_2031 NC_007954.1 2410787 2412712 D alpha amylase, catalytic region 2410787..2412712 Shewanella denitrificans OS217 4018523 YP_563038.1 CDS Sden_2032 NC_007954.1 2412749 2414710 D alpha amylase, catalytic region 2412749..2414710 Shewanella denitrificans OS217 4018524 YP_563039.1 CDS Sden_2034 NC_007954.1 2415209 2415622 R hypothetical protein complement(2415209..2415622) Shewanella denitrificans OS217 4018526 YP_563040.1 CDS Sden_2035 NC_007954.1 2415670 2415867 R hypothetical protein complement(2415670..2415867) Shewanella denitrificans OS217 4018527 YP_563041.1 CDS Sden_2036 NC_007954.1 2415869 2416219 R glyoxalase/bleomycin resistance protein/dioxygenase complement(2415869..2416219) Shewanella denitrificans OS217 4018528 YP_563042.1 CDS Sden_2037 NC_007954.1 2416379 2417077 R hypothetical protein complement(2416379..2417077) Shewanella denitrificans OS217 4018529 YP_563043.1 CDS Sden_2038 NC_007954.1 2417260 2417799 R hypothetical protein complement(2417260..2417799) Shewanella denitrificans OS217 4018530 YP_563044.1 CDS Sden_2039 NC_007954.1 2418072 2421257 D hypothetical protein 2418072..2421257 Shewanella denitrificans OS217 4018531 YP_563045.1 CDS Sden_2040 NC_007954.1 2421352 2421786 R hypothetical protein complement(2421352..2421786) Shewanella denitrificans OS217 4018532 YP_563046.1 CDS Sden_2041 NC_007954.1 2421902 2422525 R 2OG-Fe(II) oxygenase complement(2421902..2422525) Shewanella denitrificans OS217 4018533 YP_563047.1 CDS Sden_2042 NC_007954.1 2422664 2424400 R sulphate transporter complement(2422664..2424400) Shewanella denitrificans OS217 4018534 YP_563048.1 CDS Sden_2043 NC_007954.1 2424698 2425918 D Bcr/CflA subfamily drug resistance transporter 2424698..2425918 Shewanella denitrificans OS217 4018535 YP_563049.1 CDS Sden_2044 NC_007954.1 2426251 2428206 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2426251..2428206 Shewanella denitrificans OS217 4018536 YP_563050.1 CDS Sden_2045 NC_007954.1 2428308 2429546 R nucleoside recognition complement(2428308..2429546) Shewanella denitrificans OS217 4018537 YP_563051.1 CDS yebU NC_007954.1 2429660 2431177 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2429660..2431177 Shewanella denitrificans OS217 4018538 YP_563052.1 CDS Sden_2047 NC_007954.1 2431740 2432381 R hypothetical protein complement(2431740..2432381) Shewanella denitrificans OS217 4018539 YP_563053.1 CDS Sden_2048 NC_007954.1 2432838 2433626 R TatD-related deoxyribonuclease complement(2432838..2433626) Shewanella denitrificans OS217 4018540 YP_563054.1 CDS Sden_2049 NC_007954.1 2433673 2433999 R type IV pilus assembly PilZ complement(2433673..2433999) Shewanella denitrificans OS217 4018541 YP_563055.1 CDS Sden_2050 NC_007954.1 2434009 2434974 R DNA polymerase III, delta prime subunit complement(2434009..2434974) Shewanella denitrificans OS217 4018542 YP_563056.1 CDS tmk NC_007954.1 2435041 2435688 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2435041..2435688) Shewanella denitrificans OS217 4018543 YP_563057.1 CDS Sden_2052 NC_007954.1 2435685 2437163 R aminodeoxychorismate lyase complement(2435685..2437163) Shewanella denitrificans OS217 4018544 YP_563058.1 CDS Sden_2053 NC_007954.1 2437171 2438055 R aminotransferase, class IV complement(2437171..2438055) Shewanella denitrificans OS217 4018545 YP_563059.1 CDS Sden_2054 NC_007954.1 2438177 2438815 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2438177..2438815) Shewanella denitrificans OS217 4018546 YP_563060.1 CDS Sden_2055 NC_007954.1 2438824 2439954 R ATP-binding Mrp/Nbp35 family protein complement(2438824..2439954) Shewanella denitrificans OS217 4018547 YP_563061.1 CDS metG NC_007954.1 2440103 2442172 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2440103..2442172 Shewanella denitrificans OS217 4018548 YP_563062.1 CDS Sden_2057 NC_007954.1 2443158 2443985 D hypothetical protein 2443158..2443985 Shewanella denitrificans OS217 4018549 YP_563063.1 CDS Sden_2058 NC_007954.1 2444118 2445320 R transposase, mutator type complement(2444118..2445320) Shewanella denitrificans OS217 4018550 YP_563064.1 CDS Sden_2059 NC_007954.1 2445910 2446650 D hypothetical protein 2445910..2446650 Shewanella denitrificans OS217 4018551 YP_563065.1 CDS Sden_2060 NC_007954.1 2446872 2447504 R hypothetical protein complement(2446872..2447504) Shewanella denitrificans OS217 4018552 YP_563066.1 CDS Sden_2061 NC_007954.1 2448680 2449129 R hypothetical protein complement(2448680..2449129) Shewanella denitrificans OS217 4018553 YP_563067.1 CDS Sden_2062 NC_007954.1 2449266 2450468 D transposase, IS4 2449266..2450468 Shewanella denitrificans OS217 4018554 YP_563068.1 CDS Sden_2063 NC_007954.1 2450629 2451384 D hypothetical protein 2450629..2451384 Shewanella denitrificans OS217 4018555 YP_563069.1 CDS Sden_2064 NC_007954.1 2451439 2451759 R hypothetical protein complement(2451439..2451759) Shewanella denitrificans OS217 4018556 YP_563070.1 CDS Sden_2065 NC_007954.1 2452243 2452866 D hypothetical protein 2452243..2452866 Shewanella denitrificans OS217 4018557 YP_563071.1 CDS Sden_2066 NC_007954.1 2452903 2453385 R GCN5-related N-acetyltransferase complement(2452903..2453385) Shewanella denitrificans OS217 4018558 YP_563072.1 CDS Sden_2067 NC_007954.1 2453818 2454318 D hypothetical protein 2453818..2454318 Shewanella denitrificans OS217 4018559 YP_563073.1 CDS Sden_2068 NC_007954.1 2454345 2455373 D integrase catalytic subunit 2454345..2455373 Shewanella denitrificans OS217 4018560 YP_563074.1 CDS Sden_2069 NC_007954.1 2455669 2456052 R hypothetical protein complement(2455669..2456052) Shewanella denitrificans OS217 4018561 YP_563075.1 CDS Sden_2070 NC_007954.1 2456923 2458320 R glycoside hydrolase family protein complement(2456923..2458320) Shewanella denitrificans OS217 4018562 YP_563076.1 CDS Sden_2071 NC_007954.1 2458783 2459028 R hypothetical protein complement(2458783..2459028) Shewanella denitrificans OS217 4018563 YP_563077.1 CDS Sden_2072 NC_007954.1 2459220 2459654 D glyoxalase/bleomycin resistance protein/dioxygenase 2459220..2459654 Shewanella denitrificans OS217 4018564 YP_563078.1 CDS Sden_2073 NC_007954.1 2459750 2460520 R hypothetical protein complement(2459750..2460520) Shewanella denitrificans OS217 4018565 YP_563079.1 CDS Sden_2074 NC_007954.1 2460738 2461097 D hypothetical protein 2460738..2461097 Shewanella denitrificans OS217 4018566 YP_563080.1 CDS asnB NC_007954.1 2461588 2463255 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2461588..2463255 Shewanella denitrificans OS217 4018567 YP_563081.1 CDS Sden_2076 NC_007954.1 2463485 2464135 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2463485..2464135) Shewanella denitrificans OS217 4018568 YP_563082.1 CDS Sden_2077 NC_007954.1 2464152 2465978 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2464152..2465978) Shewanella denitrificans OS217 4018569 YP_563083.1 CDS Sden_2078 NC_007954.1 2465990 2466688 R 6-phosphogluconolactonase complement(2465990..2466688) Shewanella denitrificans OS217 4018570 YP_563084.1 CDS Sden_2079 NC_007954.1 2466697 2468169 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2466697..2468169) Shewanella denitrificans OS217 4018571 YP_563085.1 CDS Sden_2080 NC_007954.1 2468490 2469350 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2468490..2469350 Shewanella denitrificans OS217 4018572 YP_563086.1 CDS Sden_2081 NC_007954.1 2469629 2471068 D pyruvate kinase 2469629..2471068 Shewanella denitrificans OS217 4018573 YP_563087.1 CDS Sden_2082 NC_007954.1 2471830 2473620 D hypothetical protein 2471830..2473620 Shewanella denitrificans OS217 4018574 YP_563088.1 CDS Sden_2083 NC_007954.1 2473633 2475375 D hypothetical protein 2473633..2475375 Shewanella denitrificans OS217 4018575 YP_563089.1 CDS Sden_2084 NC_007954.1 2475799 2476404 R hypothetical protein complement(2475799..2476404) Shewanella denitrificans OS217 4018576 YP_563090.1 CDS Sden_2085 NC_007954.1 2477671 2478942 D esterase 2477671..2478942 Shewanella denitrificans OS217 4018577 YP_563091.1 CDS Sden_2086 NC_007954.1 2479032 2480042 R twin-arginine translocation pathway signal complement(2479032..2480042) Shewanella denitrificans OS217 4018578 YP_563092.1 CDS Sden_2087 NC_007954.1 2480068 2480958 R hypothetical protein complement(2480068..2480958) Shewanella denitrificans OS217 4018579 YP_563093.1 CDS Sden_2088 NC_007954.1 2481475 2482575 D esterase 2481475..2482575 Shewanella denitrificans OS217 4018580 YP_563094.1 CDS Sden_2089 NC_007954.1 2483087 2484937 D type III restriction enzyme, res subunit 2483087..2484937 Shewanella denitrificans OS217 4018581 YP_563095.1 CDS grxA NC_007954.1 2485108 2485368 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2485108..2485368 Shewanella denitrificans OS217 4018582 YP_563096.1 CDS Sden_2091 NC_007954.1 2485482 2486087 R alkyl hydroperoxide reductase complement(2485482..2486087) Shewanella denitrificans OS217 4018583 YP_563097.1 CDS Sden_2092 NC_007954.1 2486362 2487699 D Na+/H+ antiporter NhaC 2486362..2487699 Shewanella denitrificans OS217 4018584 YP_563098.1 CDS upp NC_007954.1 2487863 2488489 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2487863..2488489) Shewanella denitrificans OS217 4018585 YP_563099.1 CDS Sden_2094 NC_007954.1 2488730 2489767 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2488730..2489767 Shewanella denitrificans OS217 4018586 YP_563100.1 CDS purN NC_007954.1 2489768 2490409 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2489768..2490409 Shewanella denitrificans OS217 4018587 YP_563101.1 CDS cysB NC_007954.1 2490486 2491460 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(2490486..2491460) Shewanella denitrificans OS217 4018588 YP_563102.1 CDS Sden_2097 NC_007954.1 2491832 2492611 D hypothetical protein 2491832..2492611 Shewanella denitrificans OS217 4018589 YP_563103.1 CDS Sden_2098 NC_007954.1 2492792 2493277 R CreA complement(2492792..2493277) Shewanella denitrificans OS217 4018590 YP_563104.1 CDS Sden_2099 NC_007954.1 2493350 2494720 R chaperone complement(2493350..2494720) Shewanella denitrificans OS217 4018591 YP_563105.1 CDS Sden_2100 NC_007954.1 2494885 2495865 R hypothetical protein complement(2494885..2495865) Shewanella denitrificans OS217 4018592 YP_563106.1 CDS Sden_2101 NC_007954.1 2496104 2496832 D glutathione S-transferase-like protein 2496104..2496832 Shewanella denitrificans OS217 4018593 YP_563107.1 CDS Sden_2102 NC_007954.1 2497457 2500243 D amidohydrolase 3 2497457..2500243 Shewanella denitrificans OS217 4018594 YP_563108.1 CDS Sden_2103 NC_007954.1 2500696 2501025 R hypothetical protein complement(2500696..2501025) Shewanella denitrificans OS217 4018595 YP_563109.1 CDS Sden_2104 NC_007954.1 2501440 2502159 D hypothetical protein 2501440..2502159 Shewanella denitrificans OS217 4018596 YP_563110.1 CDS Sden_2105 NC_007954.1 2502311 2502886 D phosphoglycerate mutase 2502311..2502886 Shewanella denitrificans OS217 4018597 YP_563111.1 CDS Sden_2106 NC_007954.1 2502929 2503249 D hypothetical protein 2502929..2503249 Shewanella denitrificans OS217 4018598 YP_563112.1 CDS Sden_2107 NC_007954.1 2503521 2503970 D thioesterase superfamily protein 2503521..2503970 Shewanella denitrificans OS217 4018599 YP_563113.1 CDS Sden_2108 NC_007954.1 2504240 2504884 D hypothetical protein 2504240..2504884 Shewanella denitrificans OS217 4018600 YP_563114.1 CDS Sden_2109 NC_007954.1 2504878 2505729 D aldose 1-epimerase 2504878..2505729 Shewanella denitrificans OS217 4018601 YP_563115.1 CDS Sden_2110 NC_007954.1 2505844 2509512 D hypothetical protein 2505844..2509512 Shewanella denitrificans OS217 4018602 YP_563116.1 CDS Sden_2111 NC_007954.1 2509522 2509722 D hypothetical protein 2509522..2509722 Shewanella denitrificans OS217 4018603 YP_563117.1 CDS Sden_2112 NC_007954.1 2509737 2510057 D hypothetical protein 2509737..2510057 Shewanella denitrificans OS217 4018604 YP_563118.1 CDS Sden_2113 NC_007954.1 2510103 2510900 D hypothetical protein 2510103..2510900 Shewanella denitrificans OS217 4018605 YP_563119.1 CDS Sden_2114 NC_007954.1 2511037 2511303 R hypothetical protein complement(2511037..2511303) Shewanella denitrificans OS217 4018606 YP_563120.1 CDS Sden_2115 NC_007954.1 2511321 2513597 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2511321..2513597) Shewanella denitrificans OS217 4018607 YP_563121.1 CDS Sden_2116 NC_007954.1 2513621 2514265 R regulatory protein, TetR complement(2513621..2514265) Shewanella denitrificans OS217 4018608 YP_563122.1 CDS Sden_2117 NC_007954.1 2514456 2516294 D peptidyl-dipeptidase A 2514456..2516294 Shewanella denitrificans OS217 4018609 YP_563123.1 CDS Sden_2118 NC_007954.1 2516697 2517227 D hypothetical protein 2516697..2517227 Shewanella denitrificans OS217 4018610 YP_563124.1 CDS Sden_2119 NC_007954.1 2517241 2517717 D metal-binding protein 2517241..2517717 Shewanella denitrificans OS217 4018611 YP_563125.1 CDS Sden_2120 NC_007954.1 2517774 2519936 R GGDEF domain-containing protein complement(2517774..2519936) Shewanella denitrificans OS217 4018612 YP_563126.1 CDS Sden_2121 NC_007954.1 2520102 2520434 R hypothetical protein complement(2520102..2520434) Shewanella denitrificans OS217 4018613 YP_563127.1 CDS Sden_2122 NC_007954.1 2520809 2522527 D acetolactate synthase 3 catalytic subunit 2520809..2522527 Shewanella denitrificans OS217 4018614 YP_563128.1 CDS ilvH NC_007954.1 2522527 2523021 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2522527..2523021 Shewanella denitrificans OS217 4018615 YP_563129.1 CDS Sden_2124 NC_007954.1 2523119 2523538 R glyoxalase/bleomycin resistance protein/dioxygenase complement(2523119..2523538) Shewanella denitrificans OS217 4018616 YP_563130.1 CDS Sden_2125 NC_007954.1 2523691 2524143 D redox-sensitive transcriptional activator SoxR 2523691..2524143 Shewanella denitrificans OS217 4018617 YP_563131.1 CDS Sden_2126 NC_007954.1 2524327 2524779 R heat shock protein Hsp20 complement(2524327..2524779) Shewanella denitrificans OS217 4018618 YP_563132.1 CDS Sden_2127 NC_007954.1 2525612 2526064 D hypothetical protein 2525612..2526064 Shewanella denitrificans OS217 4018619 YP_563133.1 CDS Sden_2128 NC_007954.1 2526272 2526847 R hypothetical protein complement(2526272..2526847) Shewanella denitrificans OS217 4018620 YP_563134.1 CDS Sden_2129 NC_007954.1 2526929 2527525 R cytochrome B561 complement(2526929..2527525) Shewanella denitrificans OS217 4018621 YP_563135.1 CDS Sden_2130 NC_007954.1 2527785 2528648 R metalloprotease; heat shock protein HtpX complement(2527785..2528648) Shewanella denitrificans OS217 4018622 YP_563136.1 CDS Sden_2131 NC_007954.1 2528857 2529564 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2528857..2529564 Shewanella denitrificans OS217 4018623 YP_563137.1 CDS Sden_2132 NC_007954.1 2529823 2531007 D DegT/DnrJ/EryC1/StrS aminotransferase 2529823..2531007 Shewanella denitrificans OS217 4018624 YP_563138.1 CDS Sden_2133 NC_007954.1 2531082 2532152 D iron-containing alcohol dehydrogenase 2531082..2532152 Shewanella denitrificans OS217 4018625 YP_563139.1 CDS Sden_2134 NC_007954.1 2532280 2533017 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2532280..2533017 Shewanella denitrificans OS217 4018626 YP_563140.1 CDS Sden_2135 NC_007954.1 2533180 2533482 D hypothetical protein 2533180..2533482 Shewanella denitrificans OS217 4018627 YP_563141.1 CDS Sden_2136 NC_007954.1 2534423 2537032 D chitinase 2534423..2537032 Shewanella denitrificans OS217 4018628 YP_563142.1 CDS ushA NC_007954.1 2537177 2538892 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor complement(2537177..2538892) Shewanella denitrificans OS217 4018629 YP_563143.1 CDS Sden_2138 NC_007954.1 2539270 2539974 R carboxylesterase complement(2539270..2539974) Shewanella denitrificans OS217 4018630 YP_563144.1 CDS Sden_2139 NC_007954.1 2540037 2540270 R hypothetical protein complement(2540037..2540270) Shewanella denitrificans OS217 4018631 YP_563145.1 CDS Sden_2140 NC_007954.1 2540423 2540905 R peptidylprolyl isomerase, FKBP-type complement(2540423..2540905) Shewanella denitrificans OS217 4018632 YP_563146.1 CDS Sden_2141 NC_007954.1 2540998 2542311 R lytic murein transglycosylase complement(2540998..2542311) Shewanella denitrificans OS217 4018633 YP_563147.1 CDS Sden_2142 NC_007954.1 2542399 2542770 D hypothetical protein 2542399..2542770 Shewanella denitrificans OS217 4018634 YP_563148.1 CDS Sden_2143 NC_007954.1 2542904 2543551 D hypothetical protein 2542904..2543551 Shewanella denitrificans OS217 4018635 YP_563149.1 CDS Sden_2144 NC_007954.1 2543577 2544518 R CheW-like protein complement(2543577..2544518) Shewanella denitrificans OS217 4018636 YP_563150.1 CDS Sden_2145 NC_007954.1 2545283 2545465 D hypothetical protein 2545283..2545465 Shewanella denitrificans OS217 4018637 YP_563151.1 CDS Sden_2146 NC_007954.1 2545710 2546729 R hypothetical protein complement(2545710..2546729) Shewanella denitrificans OS217 4018638 YP_563152.1 CDS Sden_2147 NC_007954.1 2547024 2547431 D hypothetical protein 2547024..2547431 Shewanella denitrificans OS217 4018639 YP_563153.1 CDS Sden_2148 NC_007954.1 2547428 2548204 R hypothetical protein complement(2547428..2548204) Shewanella denitrificans OS217 4018640 YP_563154.1 CDS Sden_2149 NC_007954.1 2548294 2548743 D hypothetical protein 2548294..2548743 Shewanella denitrificans OS217 4018641 YP_563155.1 CDS Sden_2150 NC_007954.1 2549005 2549820 R hypothetical protein complement(2549005..2549820) Shewanella denitrificans OS217 4018642 YP_563156.1 CDS Sden_2151 NC_007954.1 2549823 2550323 R periplasmic protein-like protein complement(2549823..2550323) Shewanella denitrificans OS217 4018643 YP_563157.1 CDS Sden_2152 NC_007954.1 2550384 2550959 R PepSY-associated TM helix complement(2550384..2550959) Shewanella denitrificans OS217 4018644 YP_563158.1 CDS Sden_2153 NC_007954.1 2550960 2552306 R TPR repeat-containing protein complement(2550960..2552306) Shewanella denitrificans OS217 4018645 YP_563159.1 CDS Sden_2154 NC_007954.1 2552415 2553026 R hypothetical protein complement(2552415..2553026) Shewanella denitrificans OS217 4018646 YP_563160.1 CDS Sden_2155 NC_007954.1 2553068 2553472 R biopolymer transport protein ExbD/TolR complement(2553068..2553472) Shewanella denitrificans OS217 4018647 YP_563161.1 CDS Sden_2156 NC_007954.1 2553462 2553998 R MotA/TolQ/ExbB proton channel complement(2553462..2553998) Shewanella denitrificans OS217 4018648 YP_563162.1 CDS Sden_2157 NC_007954.1 2553988 2555454 R MotA/TolQ/ExbB proton channel complement(2553988..2555454) Shewanella denitrificans OS217 4018649 YP_563163.1 CDS Sden_2158 NC_007954.1 2555454 2556206 R hypothetical protein complement(2555454..2556206) Shewanella denitrificans OS217 4018650 YP_563164.1 CDS Sden_2159 NC_007954.1 2556353 2558407 R TonB-dependent receptor complement(2556353..2558407) Shewanella denitrificans OS217 4018651 YP_563165.1 CDS Sden_2160 NC_007954.1 2558647 2559441 R hypothetical protein complement(2558647..2559441) Shewanella denitrificans OS217 4018652 YP_563166.1 CDS Sden_2161 NC_007954.1 2559678 2560607 R regulatory protein, LysR complement(2559678..2560607) Shewanella denitrificans OS217 4018653 YP_563167.1 CDS Sden_2162 NC_007954.1 2560854 2562014 D homogentisate 1,2-dioxygenase 2560854..2562014 Shewanella denitrificans OS217 4018654 YP_563168.1 CDS Sden_2163 NC_007954.1 2562082 2563122 D 4-hydroxyphenylpyruvate dioxygenase 2562082..2563122 Shewanella denitrificans OS217 4018655 YP_563169.1 CDS Sden_2164 NC_007954.1 2563283 2563960 D lysine exporter protein LysE/YggA 2563283..2563960 Shewanella denitrificans OS217 4018656 YP_563170.1 CDS Sden_2165 NC_007954.1 2564306 2565139 R hypothetical protein complement(2564306..2565139) Shewanella denitrificans OS217 4018657 YP_563171.1 CDS Sden_2166 NC_007954.1 2565732 2566322 R hypothetical protein complement(2565732..2566322) Shewanella denitrificans OS217 4018658 YP_563172.1 CDS Sden_2167 NC_007954.1 2566900 2567379 R hypothetical protein complement(2566900..2567379) Shewanella denitrificans OS217 4018659 YP_563173.1 CDS Sden_2168 NC_007954.1 2567867 2568895 R integrase catalytic subunit complement(2567867..2568895) Shewanella denitrificans OS217 4018660 YP_563174.1 CDS Sden_2169 NC_007954.1 2568922 2569422 R hypothetical protein complement(2568922..2569422) Shewanella denitrificans OS217 4018661 YP_563175.1 CDS Sden_2170 NC_007954.1 2570284 2571270 D helix-turn-helix, AraC type 2570284..2571270 Shewanella denitrificans OS217 4018662 YP_563176.1 CDS Sden_2171 NC_007954.1 2571533 2572954 D peptidase S41 2571533..2572954 Shewanella denitrificans OS217 4018663 YP_563177.1 CDS Sden_2172 NC_007954.1 2573537 2575600 R TonB-dependent receptor, plug complement(2573537..2575600) Shewanella denitrificans OS217 4018664 YP_563178.1 CDS Sden_2173 NC_007954.1 2575654 2576097 D regulatory protein, MerR 2575654..2576097 Shewanella denitrificans OS217 4018665 YP_563179.1 CDS Sden_2174 NC_007954.1 2576307 2576537 R hypothetical protein complement(2576307..2576537) Shewanella denitrificans OS217 4018666 YP_563180.1 CDS Sden_2175 NC_007954.1 2577224 2578312 D hypothetical protein 2577224..2578312 Shewanella denitrificans OS217 4018667 YP_563181.1 CDS Sden_2176 NC_007954.1 2578421 2579623 R transposase, mutator type complement(2578421..2579623) Shewanella denitrificans OS217 4018668 YP_563182.1 CDS Sden_2177 NC_007954.1 2579989 2580900 R hypothetical protein complement(2579989..2580900) Shewanella denitrificans OS217 4018669 YP_563183.1 CDS Sden_2178 NC_007954.1 2580979 2581857 R WD-40-like beta propeller repeat-containing protein complement(2580979..2581857) Shewanella denitrificans OS217 4018670 YP_563184.1 CDS Sden_2179 NC_007954.1 2583802 2584728 R auxin efflux carrier complement(2583802..2584728) Shewanella denitrificans OS217 4018671 YP_563185.1 CDS Sden_2180 NC_007954.1 2584838 2585710 R succinyl-CoA synthetase subunit alpha complement(2584838..2585710) Shewanella denitrificans OS217 4018672 YP_563186.1 CDS sucC NC_007954.1 2585710 2586876 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2585710..2586876) Shewanella denitrificans OS217 4018673 YP_563187.1 CDS Sden_2182 NC_007954.1 2586952 2588142 R 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase complement(2586952..2588142) Shewanella denitrificans OS217 4018674 YP_563188.1 CDS sucA NC_007954.1 2588172 2590994 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(2588172..2590994) Shewanella denitrificans OS217 4018675 YP_563189.1 CDS sdhB NC_007954.1 2591205 2591912 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2591205..2591912) Shewanella denitrificans OS217 4018676 YP_563190.1 CDS sdhA NC_007954.1 2591929 2593695 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2591929..2593695) Shewanella denitrificans OS217 4018677 YP_563191.1 CDS Sden_2186 NC_007954.1 2593695 2594042 R succinate dehydrogenase, cytochrome b subunit complement(2593695..2594042) Shewanella denitrificans OS217 4018678 YP_563192.1 CDS Sden_2187 NC_007954.1 2594036 2594431 R succinate dehydrogenase, cytochrome b subunit complement(2594036..2594431) Shewanella denitrificans OS217 4018679 YP_563193.1 CDS gltA NC_007954.1 2594836 2596173 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2594836..2596173 Shewanella denitrificans OS217 4018681 YP_563194.1 CDS Sden_2190 NC_007954.1 2596325 2597731 D hypothetical protein 2596325..2597731 Shewanella denitrificans OS217 4018682 YP_563195.1 CDS Sden_2191 NC_007954.1 2597745 2598545 D band 7 protein 2597745..2598545 Shewanella denitrificans OS217 4018683 YP_563196.1 CDS Sden_2192 NC_007954.1 2598981 2600039 D secretion protein HlyD 2598981..2600039 Shewanella denitrificans OS217 4018684 YP_563197.1 CDS Sden_2193 NC_007954.1 2600052 2603339 D acriflavin resistance protein 2600052..2603339 Shewanella denitrificans OS217 4018685 YP_563198.1 CDS Sden_2194 NC_007954.1 2603336 2606428 D acriflavin resistance protein 2603336..2606428 Shewanella denitrificans OS217 4018686 YP_563199.1 CDS Sden_2195 NC_007954.1 2606432 2607301 D beta-lactamase-like protein 2606432..2607301 Shewanella denitrificans OS217 4018687 YP_563200.1 CDS Sden_2196 NC_007954.1 2607370 2608104 R hypothetical protein complement(2607370..2608104) Shewanella denitrificans OS217 4018688 YP_563201.1 CDS Sden_2197 NC_007954.1 2608316 2608486 R hypothetical protein complement(2608316..2608486) Shewanella denitrificans OS217 4018689 YP_563202.1 CDS lpxK NC_007954.1 2608499 2609494 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2608499..2609494) Shewanella denitrificans OS217 4018690 YP_563203.1 CDS Sden_2199 NC_007954.1 2609495 2611297 R Lipid A export ATP-binding/permease protein MsbA complement(2609495..2611297) Shewanella denitrificans OS217 4018691 YP_563204.1 CDS Sden_2200 NC_007954.1 2611337 2613958 R DNA internalization-related competence protein ComEC/Rec2 complement(2611337..2613958) Shewanella denitrificans OS217 4018692 YP_563205.1 CDS Sden_2201 NC_007954.1 2613991 2614494 D hypothetical protein 2613991..2614494 Shewanella denitrificans OS217 4018693 YP_563206.1 CDS Sden_2202 NC_007954.1 2614535 2615332 R amino acid ABC transporter periplasmic protein complement(2614535..2615332) Shewanella denitrificans OS217 4018694 YP_563207.1 CDS Sden_2203 NC_007954.1 2615601 2616410 R tRNA--hydroxylase complement(2615601..2616410) Shewanella denitrificans OS217 4018695 YP_563208.1 CDS Sden_2204 NC_007954.1 2616618 2617325 D regulatory protein, TetR 2616618..2617325 Shewanella denitrificans OS217 4018696 YP_563209.1 CDS Sden_2205 NC_007954.1 2617312 2618679 D membrane-fusion protein 2617312..2618679 Shewanella denitrificans OS217 4018697 YP_563210.1 CDS Sden_2206 NC_007954.1 2618676 2621867 D acriflavin resistance protein 2618676..2621867 Shewanella denitrificans OS217 4018698 YP_563211.1 CDS Sden_2207 NC_007954.1 2621957 2622310 R peptidylprolyl isomerase, FKBP-type complement(2621957..2622310) Shewanella denitrificans OS217 4018699 YP_563212.1 CDS Sden_2208 NC_007954.1 2622581 2623669 D zinc carboxypeptidase-related protein 2622581..2623669 Shewanella denitrificans OS217 4018700 YP_563213.1 CDS Sden_2209 NC_007954.1 2624100 2625218 R hypothetical protein complement(2624100..2625218) Shewanella denitrificans OS217 4018701 YP_563214.1 CDS Sden_2210 NC_007954.1 2625502 2627154 D FAD dependent oxidoreductase 2625502..2627154 Shewanella denitrificans OS217 4018702 YP_563215.1 CDS Sden_2212 NC_007954.1 2627639 2627971 R hypothetical protein complement(2627639..2627971) Shewanella denitrificans OS217 4018704 YP_563216.1 CDS Sden_2213 NC_007954.1 2628623 2629189 R hypothetical protein complement(2628623..2629189) Shewanella denitrificans OS217 4018705 YP_563217.1 CDS Sden_2214 NC_007954.1 2629509 2630111 R hypothetical protein complement(2629509..2630111) Shewanella denitrificans OS217 4018706 YP_563218.1 CDS Sden_2215 NC_007954.1 2630687 2631229 R NosL complement(2630687..2631229) Shewanella denitrificans OS217 4018707 YP_563219.1 CDS Sden_2216 NC_007954.1 2631369 2632187 R nitrous oxide metabolic protein complement(2631369..2632187) Shewanella denitrificans OS217 4018708 YP_563220.1 CDS Sden_2217 NC_007954.1 2632184 2633167 R ABC transporter related complement(2632184..2633167) Shewanella denitrificans OS217 4018709 YP_563221.1 CDS Sden_2218 NC_007954.1 2633164 2634615 R periplasmic copper-binding complement(2633164..2634615) Shewanella denitrificans OS217 4018710 YP_563222.1 CDS Sden_2219 NC_007954.1 2634821 2636707 R reduces nitrous oxide to nitrogen; nitrous-oxide reductase complement(2634821..2636707) Shewanella denitrificans OS217 4018711 YP_563223.1 CDS Sden_2220 NC_007954.1 2636787 2638937 R FMN-binding complement(2636787..2638937) Shewanella denitrificans OS217 4018712 YP_563224.1 CDS Sden_2221 NC_007954.1 2639271 2639558 R hypothetical protein complement(2639271..2639558) Shewanella denitrificans OS217 4018713 YP_563225.1 CDS Sden_2222 NC_007954.1 2639635 2640162 R hypothetical protein complement(2639635..2640162) Shewanella denitrificans OS217 4018714 YP_563226.1 CDS Sden_2223 NC_007954.1 2640372 2642648 R twin-arginine translocation pathway signal complement(2640372..2642648) Shewanella denitrificans OS217 4018715 YP_563227.1 CDS Sden_2224 NC_007954.1 2642651 2643103 R (2Fe-2S)-binding complement(2642651..2643103) Shewanella denitrificans OS217 4018716 YP_563228.1 CDS Sden_2225 NC_007954.1 2643215 2643922 R hypothetical protein complement(2643215..2643922) Shewanella denitrificans OS217 4018717 YP_563229.1 CDS Sden_2226 NC_007954.1 2643913 2644962 R hypothetical protein complement(2643913..2644962) Shewanella denitrificans OS217 4018718 YP_563230.1 CDS Sden_2227 NC_007954.1 2645211 2646500 D alpha/beta hydrolase fold 2645211..2646500 Shewanella denitrificans OS217 4018719 YP_563231.1 CDS Sden_2228 NC_007954.1 2646613 2649879 R SNF2-related complement(2646613..2649879) Shewanella denitrificans OS217 4018720 YP_563232.1 CDS Sden_2229 NC_007954.1 2650060 2651208 R porin complement(2650060..2651208) Shewanella denitrificans OS217 4018721 YP_563233.1 CDS Sden_2230 NC_007954.1 2651541 2652581 R cation diffusion facilitator family transporter complement(2651541..2652581) Shewanella denitrificans OS217 4018722 YP_563234.1 CDS Sden_2231 NC_007954.1 2652658 2652933 D hypothetical protein 2652658..2652933 Shewanella denitrificans OS217 4018723 YP_563235.1 CDS Sden_2232 NC_007954.1 2653065 2653658 D lysine exporter protein LysE/YggA 2653065..2653658 Shewanella denitrificans OS217 4018724 YP_563236.1 CDS Sden_2233 NC_007954.1 2653666 2654289 D hypothetical protein 2653666..2654289 Shewanella denitrificans OS217 4018725 YP_563237.1 CDS Sden_2234 NC_007954.1 2654373 2655125 R hypothetical protein complement(2654373..2655125) Shewanella denitrificans OS217 4018726 YP_563238.1 CDS Sden_2235 NC_007954.1 2655357 2656295 D hypothetical protein 2655357..2656295 Shewanella denitrificans OS217 4018727 YP_563239.1 CDS Sden_2236 NC_007954.1 2656286 2656765 R hypothetical protein complement(2656286..2656765) Shewanella denitrificans OS217 4018728 YP_563240.1 CDS Sden_2237 NC_007954.1 2656946 2657266 R antibiotic biosynthesis monooxygenase complement(2656946..2657266) Shewanella denitrificans OS217 4018729 YP_563241.1 CDS Sden_2238 NC_007954.1 2657328 2658113 R methyltransferase type 12 complement(2657328..2658113) Shewanella denitrificans OS217 4018730 YP_563242.1 CDS Sden_2239 NC_007954.1 2658235 2660181 R chemotaxis sensory transducer complement(2658235..2660181) Shewanella denitrificans OS217 4018731 YP_563243.1 CDS Sden_2240 NC_007954.1 2660425 2661993 R ABC transporter related complement(2660425..2661993) Shewanella denitrificans OS217 4018732 YP_563244.1 CDS Sden_2241 NC_007954.1 2662326 2663255 R LysR, substrate-binding complement(2662326..2663255) Shewanella denitrificans OS217 4018733 YP_563245.1 CDS Sden_2242 NC_007954.1 2663382 2664326 D alcohol dehydrogenase GroES-like protein 2663382..2664326 Shewanella denitrificans OS217 4018734 YP_563246.1 CDS Sden_2243 NC_007954.1 2664587 2664985 D hypothetical protein 2664587..2664985 Shewanella denitrificans OS217 4018735 YP_563247.1 CDS Sden_2244 NC_007954.1 2665287 2665694 D regulatory protein, MerR 2665287..2665694 Shewanella denitrificans OS217 4018736 YP_563248.1 CDS Sden_2245 NC_007954.1 2665915 2667084 D acyl-CoA dehydrogenase-like protein 2665915..2667084 Shewanella denitrificans OS217 4018737 YP_563249.1 CDS Sden_2246 NC_007954.1 2667096 2668754 D propionyl-CoA carboxylase 2667096..2668754 Shewanella denitrificans OS217 4018738 YP_563250.1 CDS Sden_2247 NC_007954.1 2668801 2669619 D enoyl-CoA hydratase/isomerase 2668801..2669619 Shewanella denitrificans OS217 4018739 YP_563251.1 CDS Sden_2248 NC_007954.1 2669619 2671712 D carbamoyl-phosphate synthase L chain, ATP-binding 2669619..2671712 Shewanella denitrificans OS217 4018740 YP_563252.1 CDS Sden_2249 NC_007954.1 2671713 2671868 D 3-methylcrotonyl-CoA carboxylase alpha subunit 2671713..2671868 Shewanella denitrificans OS217 4018741 YP_563253.1 CDS Sden_2250 NC_007954.1 2671869 2672756 D hydroxymethylglutaryl-CoA lyase 2671869..2672756 Shewanella denitrificans OS217 4018742 YP_563254.1 CDS Sden_2251 NC_007954.1 2672853 2673566 D 3-oxoacid CoA-transferase, subunit A 2672853..2673566 Shewanella denitrificans OS217 4018743 YP_563255.1 CDS Sden_2252 NC_007954.1 2673578 2674234 D 3-oxoacid CoA-transferase, subunit B 2673578..2674234 Shewanella denitrificans OS217 4018744 YP_563256.1 CDS Sden_2253 NC_007954.1 2675074 2675649 D hypothetical protein 2675074..2675649 Shewanella denitrificans OS217 4018745 YP_563257.1 CDS Sden_2254 NC_007954.1 2676068 2677270 D transposase, IS4 2676068..2677270 Shewanella denitrificans OS217 4018746 YP_563258.1 CDS Sden_2255 NC_007954.1 2677350 2677697 D hypothetical protein 2677350..2677697 Shewanella denitrificans OS217 4018747 YP_563259.1 CDS Sden_2256 NC_007954.1 2678882 2678995 R hypothetical protein complement(2678882..2678995) Shewanella denitrificans OS217 4018748 YP_563260.1 CDS Sden_2257 NC_007954.1 2679596 2679769 R hypothetical protein complement(2679596..2679769) Shewanella denitrificans OS217 4018749 YP_563261.1 CDS Sden_2258 NC_007954.1 2680187 2681512 R Aerolysin/hemolysin/leukocidin toxin complement(2680187..2681512) Shewanella denitrificans OS217 4018750 YP_563262.1 CDS Sden_2259 NC_007954.1 2682010 2682177 R hypothetical protein complement(2682010..2682177) Shewanella denitrificans OS217 4018751 YP_563263.1 CDS Sden_2260 NC_007954.1 2682155 2682859 R lipoprotein complement(2682155..2682859) Shewanella denitrificans OS217 4018752 YP_563264.1 CDS Sden_2261 NC_007954.1 2683199 2683711 D hypothetical protein 2683199..2683711 Shewanella denitrificans OS217 4018753 YP_563265.1 CDS Sden_2262 NC_007954.1 2684102 2685043 R integrase catalytic subunit complement(2684102..2685043) Shewanella denitrificans OS217 4018754 YP_563266.1 CDS Sden_2263 NC_007954.1 2685466 2686290 R hypothetical protein complement(2685466..2686290) Shewanella denitrificans OS217 4018755 YP_563267.1 CDS Sden_2264 NC_007954.1 2686653 2688035 D hypothetical protein 2686653..2688035 Shewanella denitrificans OS217 4018756 YP_563268.1 CDS Sden_2265 NC_007954.1 2688633 2689874 D hypothetical protein 2688633..2689874 Shewanella denitrificans OS217 4018757 YP_563269.1 CDS Sden_2266 NC_007954.1 2689861 2691729 D TPR repeat-containing protein 2689861..2691729 Shewanella denitrificans OS217 4018758 YP_563270.1 CDS Sden_2267 NC_007954.1 2691891 2692337 D hypothetical protein 2691891..2692337 Shewanella denitrificans OS217 4018759 YP_563271.1 CDS Sden_2268 NC_007954.1 2692446 2692925 R regulatory protein, MarR complement(2692446..2692925) Shewanella denitrificans OS217 4018760 YP_563272.1 CDS Sden_2269 NC_007954.1 2693192 2693914 D methyltransferase type 11 2693192..2693914 Shewanella denitrificans OS217 4018761 YP_563273.1 CDS Sden_2270 NC_007954.1 2693999 2694430 D hypothetical protein 2693999..2694430 Shewanella denitrificans OS217 4018762 YP_563274.1 CDS Sden_2271 NC_007954.1 2694514 2695101 D GCN5-related N-acetyltransferase 2694514..2695101 Shewanella denitrificans OS217 4018763 YP_563275.1 CDS Sden_2272 NC_007954.1 2695240 2698068 R endonuclease/exonuclease/phosphatase complement(2695240..2698068) Shewanella denitrificans OS217 4018764 YP_563276.1 CDS Sden_2273 NC_007954.1 2698338 2699288 R hypothetical protein complement(2698338..2699288) Shewanella denitrificans OS217 4018765 YP_563277.1 CDS Sden_2274 NC_007954.1 2699328 2699678 R hypothetical protein complement(2699328..2699678) Shewanella denitrificans OS217 4018766 YP_563278.1 CDS Sden_2275 NC_007954.1 2699715 2700356 R YceI complement(2699715..2700356) Shewanella denitrificans OS217 4018767 YP_563279.1 CDS Sden_2276 NC_007954.1 2700413 2700880 R hypothetical protein complement(2700413..2700880) Shewanella denitrificans OS217 4018768 YP_563280.1 CDS Sden_2277 NC_007954.1 2700884 2701522 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(2700884..2701522) Shewanella denitrificans OS217 4018769 YP_563281.1 CDS Sden_2278 NC_007954.1 2701635 2702567 R catalyzes the formation of putrescine from agmatine; agmatinase complement(2701635..2702567) Shewanella denitrificans OS217 4018770 YP_563282.1 CDS Sden_2279 NC_007954.1 2702597 2703532 R adenosylmethionine decarboxylase complement(2702597..2703532) Shewanella denitrificans OS217 4018771 YP_563283.1 CDS Sden_2280 NC_007954.1 2703707 2705617 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(2703707..2705617) Shewanella denitrificans OS217 4018772 YP_563284.1 CDS Sden_2281 NC_007954.1 2706409 2707242 D hypothetical protein 2706409..2707242 Shewanella denitrificans OS217 4018773 YP_563285.1 CDS Sden_2282 NC_007954.1 2707294 2708025 D hypothetical protein 2707294..2708025 Shewanella denitrificans OS217 4018774 YP_563286.1 CDS Sden_2283 NC_007954.1 2708108 2708941 D hypothetical protein 2708108..2708941 Shewanella denitrificans OS217 4018775 YP_563287.1 CDS Sden_2284 NC_007954.1 2708938 2709834 D ABC transporter related 2708938..2709834 Shewanella denitrificans OS217 4018776 YP_563288.1 CDS Sden_2285 NC_007954.1 2710110 2710319 R cold-shock protein, DNA-binding complement(2710110..2710319) Shewanella denitrificans OS217 4018777 YP_563289.1 CDS rrmA NC_007954.1 2710683 2711531 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(2710683..2711531) Shewanella denitrificans OS217 4018778 YP_563290.1 CDS sbcB NC_007954.1 2711732 2713144 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2711732..2713144 Shewanella denitrificans OS217 4018779 YP_563291.1 CDS Sden_2288 NC_007954.1 2713197 2714090 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2713197..2714090 Shewanella denitrificans OS217 4018780 YP_563292.1 CDS Sden_2289 NC_007954.1 2714189 2715061 R 2-hydroxy-3-oxopropionate reductase complement(2714189..2715061) Shewanella denitrificans OS217 4018781 YP_563293.1 CDS Sden_2290 NC_007954.1 2715079 2715564 R thioesterase superfamily protein complement(2715079..2715564) Shewanella denitrificans OS217 4018782 YP_563294.1 CDS Sden_2291 NC_007954.1 2715705 2716949 R beta-ketoacyl synthase complement(2715705..2716949) Shewanella denitrificans OS217 4018783 YP_563295.1 CDS acpP NC_007954.1 2717168 2717401 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2717168..2717401) Shewanella denitrificans OS217 4018784 YP_563296.1 CDS Sden_2293 NC_007954.1 2717564 2718310 R 3-oxoacyl-ACP reductase complement(2717564..2718310) Shewanella denitrificans OS217 4018785 YP_563297.1 CDS Sden_2294 NC_007954.1 2718320 2719246 R malonyl CoA-ACP transacylase complement(2718320..2719246) Shewanella denitrificans OS217 4018786 YP_563298.1 CDS Sden_2295 NC_007954.1 2719389 2720348 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2719389..2720348) Shewanella denitrificans OS217 4018787 YP_563299.1 CDS Sden_2296 NC_007954.1 2720357 2721388 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2720357..2721388) Shewanella denitrificans OS217 4018788 YP_563300.1 CDS rpmF NC_007954.1 2721403 2721573 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2721403..2721573) Shewanella denitrificans OS217 4018789 YP_563301.1 CDS Sden_2298 NC_007954.1 2721591 2722115 R hypothetical protein complement(2721591..2722115) Shewanella denitrificans OS217 4018790 YP_563302.1 CDS Sden_2299 NC_007954.1 2722354 2722974 D maf protein 2722354..2722974 Shewanella denitrificans OS217 4018791 YP_563303.1 CDS Sden_2300 NC_007954.1 2723095 2723742 R HAD family hydrolase complement(2723095..2723742) Shewanella denitrificans OS217 4018792 YP_563304.1 CDS Sden_2301 NC_007954.1 2723744 2724700 R pseudouridine synthase, RluD complement(2723744..2724700) Shewanella denitrificans OS217 4018793 YP_563305.1 CDS Sden_2302 NC_007954.1 2725306 2728614 D ribonuclease 2725306..2728614 Shewanella denitrificans OS217 4018794 YP_563306.1 CDS Sden_2303 NC_007954.1 2728793 2730352 D sulphate transporter 2728793..2730352 Shewanella denitrificans OS217 4018795 YP_563307.1 CDS Sden_2304 NC_007954.1 2730463 2731368 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(2730463..2731368) Shewanella denitrificans OS217 4018796 YP_563308.1 CDS Sden_2305 NC_007954.1 2731578 2732417 D 2OG-Fe(II) oxygenase 2731578..2732417 Shewanella denitrificans OS217 4018797 YP_563309.1 CDS rbgA NC_007954.1 2732566 2733507 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2732566..2733507 Shewanella denitrificans OS217 4018798 YP_563310.1 CDS Sden_2307 NC_007954.1 2733608 2734093 R low molecular weight phosphotyrosine protein phosphatase complement(2733608..2734093) Shewanella denitrificans OS217 4018799 YP_563311.1 CDS Sden_2308 NC_007954.1 2734253 2734633 D diacylglycerol kinase 2734253..2734633 Shewanella denitrificans OS217 4018800 YP_563312.1 CDS Sden_2309 NC_007954.1 2734677 2735516 R regulatory protein, LysR complement(2734677..2735516) Shewanella denitrificans OS217 4018801 YP_563313.1 CDS Sden_2310 NC_007954.1 2735625 2736065 D hypothetical protein 2735625..2736065 Shewanella denitrificans OS217 4018802 YP_563314.1 CDS Sden_2311 NC_007954.1 2736623 2737495 D hypothetical protein 2736623..2737495 Shewanella denitrificans OS217 4018803 YP_563315.1 CDS Sden_2312 NC_007954.1 2737680 2738705 D GGDEF domain-containing protein 2737680..2738705 Shewanella denitrificans OS217 4018804 YP_563316.1 CDS Sden_2313 NC_007954.1 2738911 2740098 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2738911..2740098 Shewanella denitrificans OS217 4018805 YP_563317.1 CDS Sden_2314 NC_007954.1 2740374 2740619 D hypothetical protein 2740374..2740619 Shewanella denitrificans OS217 4018806 YP_563318.1 CDS Sden_2315 NC_007954.1 2740716 2741264 R nitroreductase complement(2740716..2741264) Shewanella denitrificans OS217 4018807 YP_563319.1 CDS Sden_2316 NC_007954.1 2741351 2741941 R DoxX complement(2741351..2741941) Shewanella denitrificans OS217 4018808 YP_563320.1 CDS Sden_2317 NC_007954.1 2742145 2742996 R hypothetical protein complement(2742145..2742996) Shewanella denitrificans OS217 4018809 YP_563321.1 CDS Sden_2318 NC_007954.1 2743076 2744146 R aminoglycoside phosphotransferase complement(2743076..2744146) Shewanella denitrificans OS217 4018810 YP_563322.1 CDS Sden_2319 NC_007954.1 2744149 2744829 R nicotinamide mononucleotide transporter complement(2744149..2744829) Shewanella denitrificans OS217 4018811 YP_563323.1 CDS Sden_2320 NC_007954.1 2744867 2745163 R hypothetical protein complement(2744867..2745163) Shewanella denitrificans OS217 4018812 YP_563324.1 CDS Sden_2321 NC_007954.1 2745197 2747431 R TonB-dependent receptor complement(2745197..2747431) Shewanella denitrificans OS217 4018813 YP_563325.1 CDS Sden_2322 NC_007954.1 2747658 2748068 R hypothetical protein complement(2747658..2748068) Shewanella denitrificans OS217 4018815 YP_563326.1 CDS Sden_2323 NC_007954.1 2748196 2748639 R thioesterase superfamily protein complement(2748196..2748639) Shewanella denitrificans OS217 4018816 YP_563327.1 CDS Sden_2324 NC_007954.1 2748632 2749174 R phenylacetic acid degradation-related protein complement(2748632..2749174) Shewanella denitrificans OS217 4018817 YP_563328.1 CDS Sden_2325 NC_007954.1 2749224 2749577 R histidine triad (HIT) protein complement(2749224..2749577) Shewanella denitrificans OS217 4018818 YP_563329.1 CDS Sden_2326 NC_007954.1 2749757 2751532 D peptidase M61 2749757..2751532 Shewanella denitrificans OS217 4018819 YP_563330.1 CDS Sden_2327 NC_007954.1 2751679 2752311 R regulatory protein, LuxR complement(2751679..2752311) Shewanella denitrificans OS217 4018820 YP_563331.1 CDS Sden_2328 NC_007954.1 2752850 2755537 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2752850..2755537) Shewanella denitrificans OS217 4018821 YP_563332.1 CDS Sden_2329 NC_007954.1 2755885 2757219 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2755885..2757219 Shewanella denitrificans OS217 4018822 YP_563333.1 CDS Sden_2330 NC_007954.1 2757293 2759749 R Ig-like, group 1 complement(2757293..2759749) Shewanella denitrificans OS217 4018823 YP_563334.1 CDS Sden_2331 NC_007954.1 2759975 2761291 D sodium:dicarboxylate symporter 2759975..2761291 Shewanella denitrificans OS217 4018824 YP_563335.1 CDS Sden_2332 NC_007954.1 2761388 2762080 R 2OG-Fe(II) oxygenase complement(2761388..2762080) Shewanella denitrificans OS217 4018825 YP_563336.1 CDS Sden_2333 NC_007954.1 2762213 2763493 D hypothetical protein 2762213..2763493 Shewanella denitrificans OS217 4018826 YP_563337.1 CDS Sden_2334 NC_007954.1 2763611 2764558 R magnesium and cobalt transport protein CorA complement(2763611..2764558) Shewanella denitrificans OS217 4018827 YP_563338.1 CDS Sden_2335 NC_007954.1 2764763 2765788 R nucleoid-associated protein NdpA complement(2764763..2765788) Shewanella denitrificans OS217 4018828 YP_563339.1 CDS Sden_2336 NC_007954.1 2765865 2766077 D hypothetical protein 2765865..2766077 Shewanella denitrificans OS217 4018829 YP_563340.1 CDS Sden_2337 NC_007954.1 2766148 2767962 D sulfatase 2766148..2767962 Shewanella denitrificans OS217 4018830 YP_563341.1 CDS Sden_2338 NC_007954.1 2768302 2770140 R sigma-54 factor, interaction region complement(2768302..2770140) Shewanella denitrificans OS217 4018832 YP_563342.1 CDS Sden_2339 NC_007954.1 2770374 2771894 D aldehyde dehydrogenase 2770374..2771894 Shewanella denitrificans OS217 4018833 YP_563343.1 CDS Sden_2340 NC_007954.1 2772009 2773052 R chromosome segregation ATPase complement(2772009..2773052) Shewanella denitrificans OS217 4018834 YP_563344.1 CDS Sden_2341 NC_007954.1 2773240 2774667 R endonuclease/exonuclease/phosphatase complement(2773240..2774667) Shewanella denitrificans OS217 4018835 YP_563345.1 CDS Sden_2342 NC_007954.1 2774895 2777996 D ATP-binding region, ATPase-like protein 2774895..2777996 Shewanella denitrificans OS217 4018836 YP_563346.1 CDS Sden_2343 NC_007954.1 2777998 2779320 D response regulator receiver 2777998..2779320 Shewanella denitrificans OS217 4018837 YP_563347.1 CDS Sden_2344 NC_007954.1 2779297 2779908 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(2779297..2779908) Shewanella denitrificans OS217 4018838 YP_563348.1 CDS Sden_2345 NC_007954.1 2779908 2780951 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(2779908..2780951) Shewanella denitrificans OS217 4018839 YP_563349.1 CDS Sden_2346 NC_007954.1 2781220 2782788 D hypothetical protein 2781220..2782788 Shewanella denitrificans OS217 4018840 YP_563350.1 CDS Sden_2347 NC_007954.1 2782875 2784797 D lytic transglycosylase, catalytic 2782875..2784797 Shewanella denitrificans OS217 4018841 YP_563351.1 CDS Sden_2348 NC_007954.1 2784931 2785878 D ATPase 2784931..2785878 Shewanella denitrificans OS217 4018842 YP_563352.1 CDS Sden_2349 NC_007954.1 2785930 2787183 D hypothetical protein 2785930..2787183 Shewanella denitrificans OS217 4018843 YP_563353.1 CDS Sden_2350 NC_007954.1 2787173 2789365 D transglutaminase-like protein 2787173..2789365 Shewanella denitrificans OS217 4018844 YP_563354.1 CDS Sden_2351 NC_007954.1 2789466 2793593 D exodeoxyribonuclease V, gamma subunit 2789466..2793593 Shewanella denitrificans OS217 4018845 YP_563355.1 CDS Sden_2352 NC_007954.1 2793586 2797653 D exodeoxyribonuclease V, beta subunit 2793586..2797653 Shewanella denitrificans OS217 4018846 YP_563356.1 CDS Sden_2353 NC_007954.1 2797650 2799953 D exodeoxyribonuclease V, alpha subunit 2797650..2799953 Shewanella denitrificans OS217 4018847 YP_563357.1 CDS ddl NC_007954.1 2800113 2801120 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2800113..2801120 Shewanella denitrificans OS217 4018848 YP_563358.1 CDS Sden_2355 NC_007954.1 2801416 2801721 D hypothetical protein 2801416..2801721 Shewanella denitrificans OS217 4018849 YP_563359.1 CDS Sden_2356 NC_007954.1 2801829 2803553 D PepSY-associated TM helix 2801829..2803553 Shewanella denitrificans OS217 4018850 YP_563360.1 CDS Sden_2357 NC_007954.1 2803555 2803881 D hypothetical protein 2803555..2803881 Shewanella denitrificans OS217 4018851 YP_563361.1 CDS Sden_2358 NC_007954.1 2805202 2807769 D peptidase M1, membrane alanine aminopeptidase 2805202..2807769 Shewanella denitrificans OS217 4018852 YP_563362.1 CDS Sden_2359 NC_007954.1 2809286 2810203 R hypothetical protein complement(2809286..2810203) Shewanella denitrificans OS217 4018853 YP_563363.1 CDS Sden_2360 NC_007954.1 2810299 2811519 R hypothetical protein complement(2810299..2811519) Shewanella denitrificans OS217 4018854 YP_563364.1 CDS folX NC_007954.1 2811591 2811959 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2811591..2811959 Shewanella denitrificans OS217 4018855 YP_563365.1 CDS Sden_2362 NC_007954.1 2812051 2812944 D hypothetical protein 2812051..2812944 Shewanella denitrificans OS217 4018856 YP_563366.1 CDS Sden_2363 NC_007954.1 2813040 2813789 D lysine exporter protein LysE/YggA 2813040..2813789 Shewanella denitrificans OS217 4018857 YP_563367.1 CDS Sden_2364 NC_007954.1 2813842 2814756 R regulatory protein, LysR complement(2813842..2814756) Shewanella denitrificans OS217 4018858 YP_563368.1 CDS Sden_2365 NC_007954.1 2814951 2815463 D glyoxalase/bleomycin resistance protein/dioxygenase 2814951..2815463 Shewanella denitrificans OS217 4018859 YP_563369.1 CDS Sden_2366 NC_007954.1 2815608 2818091 R hypothetical protein complement(2815608..2818091) Shewanella denitrificans OS217 4018860 YP_563370.1 CDS Sden_2367 NC_007954.1 2818091 2818840 R ABC transporter related complement(2818091..2818840) Shewanella denitrificans OS217 4018861 YP_563371.1 CDS Sden_2368 NC_007954.1 2818890 2819456 D arylesterase 2818890..2819456 Shewanella denitrificans OS217 4018862 YP_563372.1 CDS Sden_2369 NC_007954.1 2819652 2820719 D hypothetical protein 2819652..2820719 Shewanella denitrificans OS217 4018863 YP_563373.1 CDS Sden_2370 NC_007954.1 2823055 2823297 R hypothetical protein complement(2823055..2823297) Shewanella denitrificans OS217 4018868 YP_563374.1 CDS Sden_2371 NC_007954.1 2823566 2825245 D alkaline phosphatase 2823566..2825245 Shewanella denitrificans OS217 4018869 YP_563375.1 CDS Sden_2372 NC_007954.1 2825558 2826028 D hypothetical protein 2825558..2826028 Shewanella denitrificans OS217 4018870 YP_563376.1 CDS Sden_2373 NC_007954.1 2826194 2826400 D hypothetical protein 2826194..2826400 Shewanella denitrificans OS217 4018871 YP_563377.1 CDS Sden_2374 NC_007954.1 2826465 2827994 R MATE efflux family protein complement(2826465..2827994) Shewanella denitrificans OS217 4018872 YP_563378.1 CDS Sden_2375 NC_007954.1 2828032 2828862 R Ion transport protein complement(2828032..2828862) Shewanella denitrificans OS217 4018873 YP_563379.1 CDS Sden_2376 NC_007954.1 2829061 2829606 D ErfK/YbiS/YcfS/YnhG 2829061..2829606 Shewanella denitrificans OS217 4018874 YP_563380.1 CDS Sden_2377 NC_007954.1 2829659 2830222 D hypothetical protein 2829659..2830222 Shewanella denitrificans OS217 4018875 YP_563381.1 CDS Sden_2378 NC_007954.1 2830260 2831108 R peptidase M23B complement(2830260..2831108) Shewanella denitrificans OS217 4018876 YP_563382.1 CDS Sden_2379 NC_007954.1 2831197 2832084 R hypothetical protein complement(2831197..2832084) Shewanella denitrificans OS217 4018877 YP_563383.1 CDS Sden_2380 NC_007954.1 2833280 2833612 R hypothetical protein complement(2833280..2833612) Shewanella denitrificans OS217 4018878 YP_563384.1 CDS Sden_2381 NC_007954.1 2833696 2836461 R DNA polymerase III, subunits gamma and tau complement(2833696..2836461) Shewanella denitrificans OS217 4018879 YP_563385.1 CDS Sden_2382 NC_007954.1 2836602 2837159 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2836602..2837159) Shewanella denitrificans OS217 4018880 YP_563386.1 CDS Sden_2383 NC_007954.1 2837329 2837709 R hypothetical protein complement(2837329..2837709) Shewanella denitrificans OS217 4018881 YP_563387.1 CDS Sden_2384 NC_007954.1 2837802 2837921 R hypothetical protein complement(2837802..2837921) Shewanella denitrificans OS217 4018882 YP_563388.1 CDS Sden_2385 NC_007954.1 2838124 2838867 R hypothetical protein complement(2838124..2838867) Shewanella denitrificans OS217 4018883 YP_563389.1 CDS Sden_2386 NC_007954.1 2838864 2839733 R hypothetical protein complement(2838864..2839733) Shewanella denitrificans OS217 4018884 YP_563390.1 CDS Sden_2387 NC_007954.1 2839860 2840222 R hypothetical protein complement(2839860..2840222) Shewanella denitrificans OS217 4018885 YP_563391.1 CDS Sden_2388 NC_007954.1 2840516 2841475 D dihydrouridine synthase, DuS 2840516..2841475 Shewanella denitrificans OS217 4018886 YP_563392.1 CDS Sden_2389 NC_007954.1 2841613 2842038 D hypothetical protein 2841613..2842038 Shewanella denitrificans OS217 4018887 YP_563393.1 CDS ndk NC_007954.1 2842195 2842626 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2842195..2842626) Shewanella denitrificans OS217 4018888 YP_563394.1 CDS Sden_2391 NC_007954.1 2842969 2843370 D cupin 2, barrel 2842969..2843370 Shewanella denitrificans OS217 4018889 YP_563395.1 CDS Sden_2392 NC_007954.1 2844863 2845840 R hypothetical protein complement(2844863..2845840) Shewanella denitrificans OS217 4018890 YP_563396.1 CDS Sden_2393 NC_007954.1 2846203 2846919 R hypothetical protein complement(2846203..2846919) Shewanella denitrificans OS217 4018891 YP_563397.1 CDS Sden_2394 NC_007954.1 2847065 2847379 R hypothetical protein complement(2847065..2847379) Shewanella denitrificans OS217 4018892 YP_563398.1 CDS Sden_2395 NC_007954.1 2847681 2848109 R glutathione-dependent formaldehyde-activating, GFA complement(2847681..2848109) Shewanella denitrificans OS217 4018893 YP_563399.1 CDS Sden_2396 NC_007954.1 2848180 2849436 R transporter complement(2848180..2849436) Shewanella denitrificans OS217 4018894 YP_563400.1 CDS Sden_2397 NC_007954.1 2849505 2850182 R regulatory protein, TetR complement(2849505..2850182) Shewanella denitrificans OS217 4018895 YP_563401.1 CDS Sden_2398 NC_007954.1 2850398 2851321 R S6 modification enzyme RimK complement(2850398..2851321) Shewanella denitrificans OS217 4018896 YP_563402.1 CDS Sden_2399 NC_007954.1 2851770 2853023 D metal-dependent phosphohydrolase 2851770..2853023 Shewanella denitrificans OS217 4018897 YP_563403.1 CDS Sden_2400 NC_007954.1 2853097 2855103 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2853097..2855103) Shewanella denitrificans OS217 4018898 YP_563404.1 CDS Sden_2401 NC_007954.1 2855200 2856849 R peptidase M28 complement(2855200..2856849) Shewanella denitrificans OS217 4018899 YP_563405.1 CDS Sden_2402 NC_007954.1 2856926 2857150 R hypothetical protein complement(2856926..2857150) Shewanella denitrificans OS217 4018900 YP_563406.1 CDS Sden_2403 NC_007954.1 2857254 2858105 D hypothetical protein 2857254..2858105 Shewanella denitrificans OS217 4018901 YP_563407.1 CDS Sden_2404 NC_007954.1 2858561 2861179 D TonB-dependent receptor 2858561..2861179 Shewanella denitrificans OS217 4018902 YP_563408.1 CDS Sden_2405 NC_007954.1 2861627 2863159 D hypothetical protein 2861627..2863159 Shewanella denitrificans OS217 4018903 YP_563409.1 CDS Sden_2406 NC_007954.1 2863542 2865824 D formate acetyltransferase 2863542..2865824 Shewanella denitrificans OS217 4018904 YP_563410.1 CDS pflA NC_007954.1 2865913 2866650 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2865913..2866650 Shewanella denitrificans OS217 4018905 YP_563411.1 CDS Sden_2408 NC_007954.1 2866705 2867148 R hypothetical protein complement(2866705..2867148) Shewanella denitrificans OS217 4018906 YP_563412.1 CDS Sden_2409 NC_007954.1 2867286 2868527 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2867286..2868527 Shewanella denitrificans OS217 4018907 YP_563413.1 CDS Sden_2410 NC_007954.1 2868611 2870791 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2868611..2870791 Shewanella denitrificans OS217 4018908 YP_563414.1 CDS Sden_2411 NC_007954.1 2871365 2871790 D hypothetical protein 2871365..2871790 Shewanella denitrificans OS217 4018909 YP_563415.1 CDS Sden_2412 NC_007954.1 2872451 2873047 D hypothetical protein 2872451..2873047 Shewanella denitrificans OS217 4018910 YP_563416.1 CDS Sden_2413 NC_007954.1 2873143 2874813 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(2873143..2874813) Shewanella denitrificans OS217 4018911 YP_563417.1 CDS Sden_2414 NC_007954.1 2874968 2877286 R ferrous iron transport protein B complement(2874968..2877286) Shewanella denitrificans OS217 4018912 YP_563418.1 CDS Sden_2415 NC_007954.1 2877279 2877518 R hypothetical protein complement(2877279..2877518) Shewanella denitrificans OS217 4018913 YP_563419.1 CDS Sden_2416 NC_007954.1 2877757 2878308 R GCN5-related N-acetyltransferase complement(2877757..2878308) Shewanella denitrificans OS217 4018914 YP_563420.1 CDS Sden_2417 NC_007954.1 2878373 2878651 R PpiC-type peptidyl-prolyl cis-trans isomerase complement(2878373..2878651) Shewanella denitrificans OS217 4018915 YP_563421.1 CDS Sden_2418 NC_007954.1 2878729 2880552 R hypothetical protein complement(2878729..2880552) Shewanella denitrificans OS217 4018916 YP_563422.1 CDS Sden_2419 NC_007954.1 2880618 2881127 D GGDEF domain-containing protein 2880618..2881127 Shewanella denitrificans OS217 4018917 YP_563423.1 CDS Sden_2420 NC_007954.1 2881243 2882490 R tetratricopeptide region complement(2881243..2882490) Shewanella denitrificans OS217 4018918 YP_563424.1 CDS Sden_2421 NC_007954.1 2882490 2883113 R TonB-like protein complement(2882490..2883113) Shewanella denitrificans OS217 4018919 YP_563425.1 CDS Sden_2422 NC_007954.1 2883115 2883519 R biopolymer transport protein ExbD/TolR complement(2883115..2883519) Shewanella denitrificans OS217 4018920 YP_563426.1 CDS Sden_2423 NC_007954.1 2883533 2884060 R MotA/TolQ/ExbB proton channel complement(2883533..2884060) Shewanella denitrificans OS217 4018921 YP_563427.1 CDS Sden_2424 NC_007954.1 2884060 2885412 R MotA/TolQ/ExbB proton channel complement(2884060..2885412) Shewanella denitrificans OS217 4018922 YP_563428.1 CDS Sden_2425 NC_007954.1 2885412 2886194 R hypothetical protein complement(2885412..2886194) Shewanella denitrificans OS217 4018923 YP_563429.1 CDS Sden_2426 NC_007954.1 2886851 2886961 R transposase complement(2886851..2886961) Shewanella denitrificans OS217 4018924 YP_563430.1 CDS Sden_2427 NC_007954.1 2887182 2890082 R TonB-dependent receptor, plug complement(2887182..2890082) Shewanella denitrificans OS217 4018925 YP_563431.1 CDS Sden_2428 NC_007954.1 2890399 2892864 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(2890399..2892864) Shewanella denitrificans OS217 4018926 YP_563432.1 CDS dinG NC_007954.1 2893152 2895227 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2893152..2895227 Shewanella denitrificans OS217 4018927 YP_563433.1 CDS Sden_2430 NC_007954.1 2895243 2896013 D hypothetical protein 2895243..2896013 Shewanella denitrificans OS217 4018928 YP_563434.1 CDS Sden_2431 NC_007954.1 2896010 2896672 D primosomal replication protein N'' 2896010..2896672 Shewanella denitrificans OS217 4018929 YP_563435.1 CDS Sden_2432 NC_007954.1 2896682 2897386 D hypothetical protein 2896682..2897386 Shewanella denitrificans OS217 4018930 YP_563436.1 CDS Sden_2433 NC_007954.1 2897679 2898023 D hypothetical protein 2897679..2898023 Shewanella denitrificans OS217 4018931 YP_563437.1 CDS Sden_2434 NC_007954.1 2898669 2900333 D pyridoxal-dependent decarboxylase 2898669..2900333 Shewanella denitrificans OS217 4018933 YP_563438.1 CDS Sden_2435 NC_007954.1 2900473 2901648 R chemotaxis sensory transducer complement(2900473..2901648) Shewanella denitrificans OS217 4018934 YP_563439.1 CDS Sden_2436 NC_007954.1 2901927 2902799 R pseudouridine synthase, Rsu complement(2901927..2902799) Shewanella denitrificans OS217 4018935 YP_563440.1 CDS Sden_2437 NC_007954.1 2903628 2905700 R YD repeat-containing protein complement(2903628..2905700) Shewanella denitrificans OS217 4018936 YP_563441.1 CDS Sden_2438 NC_007954.1 2905861 2906349 R serum amyloid A protein complement(2905861..2906349) Shewanella denitrificans OS217 4018937 YP_563442.1 CDS Sden_2439 NC_007954.1 2906349 2907473 R transposase, IS4 complement(2906349..2907473) Shewanella denitrificans OS217 4018938 YP_563443.1 CDS Sden_2440 NC_007954.1 2907851 2908318 R hypothetical protein complement(2907851..2908318) Shewanella denitrificans OS217 4018939 YP_563444.1 CDS Sden_2441 NC_007954.1 2908328 2909026 R hypothetical protein complement(2908328..2909026) Shewanella denitrificans OS217 4018940 YP_563445.1 CDS Sden_2442 NC_007954.1 2909400 2909669 R hypothetical protein complement(2909400..2909669) Shewanella denitrificans OS217 4018941 YP_563446.1 CDS Sden_2443 NC_007954.1 2909680 2912463 R YD repeat-containing protein complement(2909680..2912463) Shewanella denitrificans OS217 4018942 YP_563447.1 CDS Sden_2444 NC_007954.1 2912549 2914534 R Rhs family protein-like protein complement(2912549..2914534) Shewanella denitrificans OS217 4018943 YP_563448.1 CDS Sden_2445 NC_007954.1 2914576 2916156 R YD repeat-containing protein complement(2914576..2916156) Shewanella denitrificans OS217 4018944 YP_563449.1 CDS Sden_2446 NC_007954.1 2916618 2917238 R chromosome segregation and condensation protein ScpB complement(2916618..2917238) Shewanella denitrificans OS217 4018945 YP_563450.1 CDS Sden_2447 NC_007954.1 2917242 2918030 R chromosome segregation and condensation protein ScpA complement(2917242..2918030) Shewanella denitrificans OS217 4018946 YP_563451.1 CDS Sden_2448 NC_007954.1 2918253 2918873 R Sua5/YciO/YrdC/YwlC complement(2918253..2918873) Shewanella denitrificans OS217 4018947 YP_563452.1 CDS Sden_2449 NC_007954.1 2918870 2919730 R PHP-like protein complement(2918870..2919730) Shewanella denitrificans OS217 4018948 YP_563453.1 CDS Sden_2450 NC_007954.1 2920212 2921852 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2920212..2921852 Shewanella denitrificans OS217 4018949 YP_563454.1 CDS Sden_2451 NC_007954.1 2921849 2922571 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2921849..2922571 Shewanella denitrificans OS217 4018950 YP_563455.1 CDS trpD NC_007954.1 2922565 2923650 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2922565..2923650 Shewanella denitrificans OS217 4018951 YP_563456.1 CDS Sden_2453 NC_007954.1 2923653 2925188 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2923653..2925188 Shewanella denitrificans OS217 4018952 YP_563457.1 CDS Sden_2454 NC_007954.1 2925250 2926455 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2925250..2926455 Shewanella denitrificans OS217 4018953 YP_563458.1 CDS trpA NC_007954.1 2926448 2927293 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2926448..2927293 Shewanella denitrificans OS217 4018954 YP_563459.1 CDS Sden_2456 NC_007954.1 2927449 2928336 R transposase, IS4 complement(2927449..2928336) Shewanella denitrificans OS217 4018955 YP_563460.1 CDS Sden_2457 NC_007954.1 2929251 2930297 R Sel1 complement(2929251..2930297) Shewanella denitrificans OS217 4018956 YP_563461.1 CDS Sden_2458 NC_007954.1 2930376 2930723 R hypothetical protein complement(2930376..2930723) Shewanella denitrificans OS217 4018957 YP_563462.1 CDS Sden_2459 NC_007954.1 2931040 2932491 R anion transporter complement(2931040..2932491) Shewanella denitrificans OS217 4018958 YP_563463.1 CDS Sden_2460 NC_007954.1 2933575 2934243 R hypothetical protein complement(2933575..2934243) Shewanella denitrificans OS217 4018959 YP_563464.1 CDS Sden_2461 NC_007954.1 2934240 2935028 R hypothetical protein complement(2934240..2935028) Shewanella denitrificans OS217 4018960 YP_563465.1 CDS Sden_2462 NC_007954.1 2935285 2936199 D peptidase S26A, signal peptidase I 2935285..2936199 Shewanella denitrificans OS217 4018961 YP_563466.1 CDS Sden_2463 NC_007954.1 2936395 2937645 D hypothetical protein 2936395..2937645 Shewanella denitrificans OS217 4018962 YP_563467.1 CDS Sden_2464 NC_007954.1 2938391 2940190 D ATP-dependent protease 2938391..2940190 Shewanella denitrificans OS217 4018964 YP_563468.1 CDS Sden_2465 NC_007954.1 2940263 2940778 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2940263..2940778 Shewanella denitrificans OS217 4018965 YP_563469.1 CDS Sden_2466 NC_007954.1 2940977 2941153 R ribosome modulation factor complement(2940977..2941153) Shewanella denitrificans OS217 4018966 YP_563470.1 CDS Sden_2467 NC_007954.1 2941336 2943210 R hypothetical protein complement(2941336..2943210) Shewanella denitrificans OS217 4018967 YP_563471.1 CDS Sden_2468 NC_007954.1 2943237 2945159 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component complement(2943237..2945159) Shewanella denitrificans OS217 4018968 YP_563472.1 CDS Sden_2469 NC_007954.1 2945161 2945397 R glutaredoxin 2 complement(2945161..2945397) Shewanella denitrificans OS217 4018969 YP_563473.1 CDS rlmL NC_007954.1 2945387 2947522 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(2945387..2947522) Shewanella denitrificans OS217 4018970 YP_563474.1 CDS Sden_2471 NC_007954.1 2947684 2948697 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(2947684..2948697) Shewanella denitrificans OS217 4018971 YP_563475.1 CDS Sden_2472 NC_007954.1 2948811 2951330 R hypothetical protein complement(2948811..2951330) Shewanella denitrificans OS217 4018972 YP_563476.1 CDS Sden_2473 NC_007954.1 2951590 2952327 D short chain dehydrogenase 2951590..2952327 Shewanella denitrificans OS217 4018973 YP_563477.1 CDS Sden_2474 NC_007954.1 2952513 2952926 R competence protein ComEA helix-hairpin-helix region complement(2952513..2952926) Shewanella denitrificans OS217 4018974 YP_563478.1 CDS Sden_2475 NC_007954.1 2953106 2954299 R hypothetical protein complement(2953106..2954299) Shewanella denitrificans OS217 4018975 YP_563479.1 CDS Sden_2476 NC_007954.1 2954381 2954545 R hypothetical protein complement(2954381..2954545) Shewanella denitrificans OS217 4018976 YP_563480.1 CDS Sden_2477 NC_007954.1 2954566 2956014 R hypothetical protein complement(2954566..2956014) Shewanella denitrificans OS217 4018977 YP_563481.1 CDS Sden_2478 NC_007954.1 2956186 2956581 R hypothetical protein complement(2956186..2956581) Shewanella denitrificans OS217 4018978 YP_563482.1 CDS pspB NC_007954.1 2956568 2956807 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(2956568..2956807) Shewanella denitrificans OS217 4018979 YP_563483.1 CDS Sden_2480 NC_007954.1 2956824 2957507 R PspA/IM30 complement(2956824..2957507) Shewanella denitrificans OS217 4018980 YP_563484.1 CDS Sden_2481 NC_007954.1 2957684 2958790 D sigma-54 factor, interaction region 2957684..2958790 Shewanella denitrificans OS217 4018981 YP_563485.1 CDS Sden_2482 NC_007954.1 2958924 2960672 D extracellular solute-binding protein 2958924..2960672 Shewanella denitrificans OS217 4018982 YP_563486.1 CDS Sden_2483 NC_007954.1 2960672 2961703 D binding-protein-dependent transport systems inner membrane component 2960672..2961703 Shewanella denitrificans OS217 4018983 YP_563487.1 CDS Sden_2484 NC_007954.1 2961690 2962580 D binding-protein-dependent transport systems inner membrane component 2961690..2962580 Shewanella denitrificans OS217 4018984 YP_563488.1 CDS Sden_2485 NC_007954.1 2962584 2963594 D oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein 2962584..2963594 Shewanella denitrificans OS217 4018985 YP_563489.1 CDS Sden_2486 NC_007954.1 2963575 2964360 D ABC transporter related 2963575..2964360 Shewanella denitrificans OS217 4018986 YP_563490.1 CDS Sden_2487 NC_007954.1 2964466 2965668 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2964466..2965668 Shewanella denitrificans OS217 4018987 YP_563491.1 CDS Sden_2488 NC_007954.1 2965915 2966337 R GCN5-related N-acetyltransferase complement(2965915..2966337) Shewanella denitrificans OS217 4018988 YP_563492.1 CDS Sden_2489 NC_007954.1 2967046 2967939 R transcription activator, effector binding complement(2967046..2967939) Shewanella denitrificans OS217 4018989 YP_563493.1 CDS Sden_2490 NC_007954.1 2967977 2968567 R pentapeptide repeat-containing protein complement(2967977..2968567) Shewanella denitrificans OS217 4018990 YP_563494.1 CDS Sden_2491 NC_007954.1 2968670 2970547 R PpiC-type peptidyl-prolyl cis-trans isomerase complement(2968670..2970547) Shewanella denitrificans OS217 4018991 YP_563495.1 CDS Sden_2492 NC_007954.1 2970743 2971015 R histone-like DNA-binding protein complement(2970743..2971015) Shewanella denitrificans OS217 4018992 YP_563496.1 CDS Sden_2493 NC_007954.1 2971278 2973629 R ATP-dependent protease La complement(2971278..2973629) Shewanella denitrificans OS217 4018993 YP_563497.1 CDS clpX NC_007954.1 2973761 2975041 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2973761..2975041) Shewanella denitrificans OS217 4018994 YP_563498.1 CDS clpP NC_007954.1 2975144 2975755 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2975144..2975755) Shewanella denitrificans OS217 4018995 YP_563499.1 CDS tig NC_007954.1 2975847 2977151 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2975847..2977151) Shewanella denitrificans OS217 4018996 YP_563500.1 CDS Sden_2497 NC_007954.1 2978349 2979209 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2978349..2979209 Shewanella denitrificans OS217 4019000 YP_563501.1 CDS cysS NC_007954.1 2979361 2980740 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2979361..2980740) Shewanella denitrificans OS217 4019001 YP_563502.1 CDS Sden_2499 NC_007954.1 2980895 2981389 D peptidyl-prolyl cis-trans isomerase, cyclophilin type 2980895..2981389 Shewanella denitrificans OS217 4019002 YP_563503.1 CDS Sden_2500 NC_007954.1 2981409 2982149 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2981409..2982149 Shewanella denitrificans OS217 4019003 YP_563504.1 CDS Sden_2501 NC_007954.1 2982192 2983040 R dienelactone hydrolase family protein complement(2982192..2983040) Shewanella denitrificans OS217 4019004 YP_563505.1 CDS Sden_2502 NC_007954.1 2983139 2985007 R hypothetical protein complement(2983139..2985007) Shewanella denitrificans OS217 4019005 YP_563506.1 CDS Sden_2503 NC_007954.1 2985319 2987553 R TonB-dependent haem/haemoglobin receptor complement(2985319..2987553) Shewanella denitrificans OS217 4019006 YP_563507.1 CDS Sden_2504 NC_007954.1 2987836 2989107 R peptidase M23B complement(2987836..2989107) Shewanella denitrificans OS217 4019007 YP_563508.1 CDS Sden_2505 NC_007954.1 2989291 2993088 R SMC protein-like protein complement(2989291..2993088) Shewanella denitrificans OS217 4019008 YP_563509.1 CDS Sden_2506 NC_007954.1 2993085 2994356 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD complement(2993085..2994356) Shewanella denitrificans OS217 4019009 YP_563510.1 CDS Sden_2507 NC_007954.1 2994406 2995167 R hypothetical protein complement(2994406..2995167) Shewanella denitrificans OS217 4019010 YP_563511.1 CDS Sden_2508 NC_007954.1 2995247 2996206 R permeases-like protein complement(2995247..2996206) Shewanella denitrificans OS217 4019011 YP_563512.1 CDS Sden_2509 NC_007954.1 2996355 2996741 R hypothetical protein complement(2996355..2996741) Shewanella denitrificans OS217 4019012 YP_563513.1 CDS Sden_2510 NC_007954.1 2996751 2996981 R RNA-binding S4 complement(2996751..2996981) Shewanella denitrificans OS217 4019013 YP_563514.1 CDS Sden_2511 NC_007954.1 2997054 2997911 R NAD-dependent epimerase/dehydratase complement(2997054..2997911) Shewanella denitrificans OS217 4019014 YP_563515.1 CDS Sden_2512 NC_007954.1 2998047 2999267 R hypothetical protein complement(2998047..2999267) Shewanella denitrificans OS217 4019015 YP_563516.1 CDS Sden_2513 NC_007954.1 2999450 3000070 R hypothetical protein complement(2999450..3000070) Shewanella denitrificans OS217 4019016 YP_563517.1 CDS Sden_2514 NC_007954.1 3000135 3002147 R DNA ligase, NAD-dependent complement(3000135..3002147) Shewanella denitrificans OS217 4019017 YP_563518.1 CDS Sden_2515 NC_007954.1 3002206 3003216 R cell division protein ZipA complement(3002206..3003216) Shewanella denitrificans OS217 4019018 YP_563519.1 CDS Sden_2516 NC_007954.1 3003236 3006652 R chromosome segregation protein SMC complement(3003236..3006652) Shewanella denitrificans OS217 4019019 YP_563520.1 CDS Sden_2517 NC_007954.1 3006818 3007591 D role in sulfur assimilation; sulfate transport protein CysZ 3006818..3007591 Shewanella denitrificans OS217 4019020 YP_563521.1 CDS Sden_2518 NC_007954.1 3007707 3008930 R GGDEF domain-containing protein complement(3007707..3008930) Shewanella denitrificans OS217 4019021 YP_563522.1 CDS Sden_2519 NC_007954.1 3008955 3010079 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3008955..3010079) Shewanella denitrificans OS217 4019022 YP_563523.1 CDS Sden_2520 NC_007954.1 3010475 3011443 D cysteine synthase A 3010475..3011443 Shewanella denitrificans OS217 4019023 YP_563524.1 CDS Sden_2521 NC_007954.1 3011546 3012718 R methionine gamma-lyase complement(3011546..3012718) Shewanella denitrificans OS217 4019024 YP_563525.1 CDS Sden_2522 NC_007954.1 3012950 3014185 R AFG1-like ATPase complement(3012950..3014185) Shewanella denitrificans OS217 4019025 YP_563526.1 CDS Sden_2523 NC_007954.1 3014360 3015031 D thioredoxin-like protein 3014360..3015031 Shewanella denitrificans OS217 4019026 YP_563527.1 CDS Sden_2524 NC_007954.1 3015228 3015920 D pseudouridylate synthase 3015228..3015920 Shewanella denitrificans OS217 4019027 YP_563528.1 CDS Sden_2525 NC_007954.1 3016034 3017257 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(3016034..3017257) Shewanella denitrificans OS217 4019028 YP_563529.1 CDS Sden_2526 NC_007954.1 3017428 3018252 R hypothetical protein complement(3017428..3018252) Shewanella denitrificans OS217 4019029 YP_563530.1 CDS Sden_2527 NC_007954.1 3018380 3019273 R CheW-like protein complement(3018380..3019273) Shewanella denitrificans OS217 4019030 YP_563531.1 CDS Sden_2528 NC_007954.1 3019540 3020010 R Dual specificity protein phosphatase complement(3019540..3020010) Shewanella denitrificans OS217 4019031 YP_563532.1 CDS Sden_2529 NC_007954.1 3020105 3021385 R DEAD/DEAH box helicase-like protein complement(3020105..3021385) Shewanella denitrificans OS217 4019032 YP_563533.1 CDS Sden_2530 NC_007954.1 3021557 3022132 R methylated-DNA--protein-cysteine methyltransferase complement(3021557..3022132) Shewanella denitrificans OS217 4019033 YP_563534.1 CDS Sden_2531 NC_007954.1 3022129 3023766 R Ada, metal-binding complement(3022129..3023766) Shewanella denitrificans OS217 4019034 YP_563535.1 CDS Sden_2532 NC_007954.1 3023968 3025797 D ABC transporter related 3023968..3025797 Shewanella denitrificans OS217 4019035 YP_563536.1 CDS gltX NC_007954.1 3027216 3028637 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3027216..3028637 Shewanella denitrificans OS217 4019042 YP_563537.1 CDS Sden_2534 NC_007954.1 3031409 3031771 D hypothetical protein 3031409..3031771 Shewanella denitrificans OS217 4019051 YP_563538.1 CDS Sden_2536 NC_007954.1 3033785 3034363 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(3033785..3034363) Shewanella denitrificans OS217 4019053 YP_563539.1 CDS Sden_2537 NC_007954.1 3034481 3036055 R Na+/H+ antiporter NhaC complement(3034481..3036055) Shewanella denitrificans OS217 4019054 YP_563540.1 CDS Sden_2538 NC_007954.1 3036408 3037331 R electron transfer flavoprotein, alpha subunit complement(3036408..3037331) Shewanella denitrificans OS217 4019055 YP_563541.1 CDS Sden_2539 NC_007954.1 3037333 3038082 R electron transfer flavoprotein beta-subunit complement(3037333..3038082) Shewanella denitrificans OS217 4019056 YP_563542.1 CDS Sden_2540 NC_007954.1 3038971 3039378 D histone-like nucleoid-structuring protein H-NS 3038971..3039378 Shewanella denitrificans OS217 4019057 YP_563543.1 CDS Sden_2541 NC_007954.1 3039537 3039929 D lipoprotein 3039537..3039929 Shewanella denitrificans OS217 4019058 YP_563544.1 CDS Sden_2542 NC_007954.1 3039957 3040754 D hypothetical protein 3039957..3040754 Shewanella denitrificans OS217 4019059 YP_563545.1 CDS Sden_2543 NC_007954.1 3040741 3041355 D acetyltransferase 3040741..3041355 Shewanella denitrificans OS217 4019060 YP_563546.1 CDS Sden_2544 NC_007954.1 3041469 3043184 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3041469..3043184 Shewanella denitrificans OS217 4019061 YP_563547.1 CDS Sden_2545 NC_007954.1 3043355 3044719 R ATP-binding region, ATPase-like protein complement(3043355..3044719) Shewanella denitrificans OS217 4019062 YP_563548.1 CDS Sden_2546 NC_007954.1 3044726 3046273 R metal-dependent phosphohydrolase complement(3044726..3046273) Shewanella denitrificans OS217 4019063 YP_563549.1 CDS Sden_2547 NC_007954.1 3046573 3047700 D patatin 3046573..3047700 Shewanella denitrificans OS217 4019064 YP_563550.1 CDS Sden_2548 NC_007954.1 3047818 3048393 D dTDP-4-dehydrorhamnose 3,5-epimerase 3047818..3048393 Shewanella denitrificans OS217 4019065 YP_563551.1 CDS Sden_2549 NC_007954.1 3048390 3049268 D dTDP-4-dehydrorhamnose reductase 3048390..3049268 Shewanella denitrificans OS217 4019066 YP_563552.1 CDS Sden_2550 NC_007954.1 3049489 3049650 D hypothetical protein 3049489..3049650 Shewanella denitrificans OS217 4019067 YP_563553.1 CDS Sden_2551 NC_007954.1 3049933 3051309 R magnesium transporter complement(3049933..3051309) Shewanella denitrificans OS217 4019068 YP_563554.1 CDS Sden_2552 NC_007954.1 3051460 3051945 D glutathione peroxidase 3051460..3051945 Shewanella denitrificans OS217 4019069 YP_563555.1 CDS Sden_2553 NC_007954.1 3052749 3053720 R phosphate binding protein complement(3052749..3053720) Shewanella denitrificans OS217 4019070 YP_563556.1 CDS Sden_2554 NC_007954.1 3053934 3055784 R peptidase M61 complement(3053934..3055784) Shewanella denitrificans OS217 4019071 YP_563557.1 CDS Sden_2555 NC_007954.1 3055878 3058088 D TPR repeat-containing protein 3055878..3058088 Shewanella denitrificans OS217 4019072 YP_563558.1 CDS Sden_2556 NC_007954.1 3058295 3059851 D GGDEF domain-containing protein 3058295..3059851 Shewanella denitrificans OS217 4019073 YP_563559.1 CDS Sden_2557 NC_007954.1 3059911 3061266 D hypothetical protein 3059911..3061266 Shewanella denitrificans OS217 4019074 YP_563560.1 CDS xni NC_007954.1 3061326 3062084 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3061326..3062084 Shewanella denitrificans OS217 4019075 YP_563561.1 CDS Sden_2559 NC_007954.1 3062138 3062566 D hypothetical protein 3062138..3062566 Shewanella denitrificans OS217 4019076 YP_563562.1 CDS Sden_2560 NC_007954.1 3062662 3065631 R peptidase S9, prolyl oligopeptidase active site region complement(3062662..3065631) Shewanella denitrificans OS217 4019077 YP_563563.1 CDS Sden_2561 NC_007954.1 3065895 3066905 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3065895..3066905 Shewanella denitrificans OS217 4019078 YP_563564.1 CDS Sden_2562 NC_007954.1 3066986 3068089 R RNA 2'-O-ribose methyltransferase complement(3066986..3068089) Shewanella denitrificans OS217 4019079 YP_563565.1 CDS Sden_2563 NC_007954.1 3068176 3068577 R hypothetical protein complement(3068176..3068577) Shewanella denitrificans OS217 4019080 YP_563566.1 CDS Sden_2564 NC_007954.1 3068619 3069335 R hypothetical protein complement(3068619..3069335) Shewanella denitrificans OS217 4019081 YP_563567.1 CDS Sden_2565 NC_007954.1 3069390 3070301 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3069390..3070301) Shewanella denitrificans OS217 4019082 YP_563568.1 CDS Sden_2566 NC_007954.1 3070460 3071920 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3070460..3071920) Shewanella denitrificans OS217 4019083 YP_563569.1 CDS motB NC_007954.1 3072174 3073130 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3072174..3073130) Shewanella denitrificans OS217 4019084 YP_563570.1 CDS Sden_2568 NC_007954.1 3073133 3073900 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3073133..3073900) Shewanella denitrificans OS217 4019085 YP_563571.1 CDS Sden_2569 NC_007954.1 3074314 3074550 D exodeoxyribonuclease VII, small subunit 3074314..3074550 Shewanella denitrificans OS217 4019086 YP_563572.1 CDS Sden_2570 NC_007954.1 3074551 3075432 D polyprenyl synthetase 3074551..3075432 Shewanella denitrificans OS217 4019087 YP_563573.1 CDS Sden_2571 NC_007954.1 3075452 3077320 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3075452..3077320 Shewanella denitrificans OS217 4019088 YP_563574.1 CDS Sden_2572 NC_007954.1 3077461 3078066 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3077461..3078066) Shewanella denitrificans OS217 4019089 YP_563575.1 CDS ppnK NC_007954.1 3078115 3079044 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3078115..3079044 Shewanella denitrificans OS217 4019090 YP_563576.1 CDS Sden_2574 NC_007954.1 3079143 3080816 D L-lactate permease 3079143..3080816 Shewanella denitrificans OS217 4019091 YP_563577.1 CDS Sden_2575 NC_007954.1 3080822 3081916 R cobalamin synthesis protein, P47K complement(3080822..3081916) Shewanella denitrificans OS217 4019092 YP_563578.1 CDS Sden_2576 NC_007954.1 3081998 3083266 R DEAD/DEAH box helicase-like protein complement(3081998..3083266) Shewanella denitrificans OS217 4019093 YP_563579.1 CDS Sden_2577 NC_007954.1 3083341 3086484 R GGDEF domain-containing protein complement(3083341..3086484) Shewanella denitrificans OS217 4019094 YP_563580.1 CDS Sden_2578 NC_007954.1 3086882 3088030 D iron-containing alcohol dehydrogenase 3086882..3088030 Shewanella denitrificans OS217 4019095 YP_563581.1 CDS Sden_2579 NC_007954.1 3088270 3088656 D hypothetical protein 3088270..3088656 Shewanella denitrificans OS217 4019096 YP_563582.1 CDS Sden_2580 NC_007954.1 3088732 3089343 R hypothetical protein complement(3088732..3089343) Shewanella denitrificans OS217 4019097 YP_563583.1 CDS Sden_2581 NC_007954.1 3089452 3090162 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3089452..3090162) Shewanella denitrificans OS217 4019098 YP_563584.1 CDS Sden_2582 NC_007954.1 3090224 3091042 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3090224..3091042) Shewanella denitrificans OS217 4019099 YP_563585.1 CDS Sden_2583 NC_007954.1 3091073 3092731 R phosphate ABC transporter permease complement(3091073..3092731) Shewanella denitrificans OS217 4019100 YP_563586.1 CDS Sden_2584 NC_007954.1 3092816 3095071 R binding-protein-dependent transport systems inner membrane component complement(3092816..3095071) Shewanella denitrificans OS217 4019101 YP_563587.1 CDS Sden_2585 NC_007954.1 3095335 3095841 D amino acid-binding ACT 3095335..3095841 Shewanella denitrificans OS217 4019102 YP_563588.1 CDS Sden_2586 NC_007954.1 3095958 3096779 D hypothetical protein 3095958..3096779 Shewanella denitrificans OS217 4019103 YP_563589.1 CDS Sden_2587 NC_007954.1 3096817 3098682 R GGDEF domain-containing protein complement(3096817..3098682) Shewanella denitrificans OS217 4019104 YP_563590.1 CDS Sden_2588 NC_007954.1 3098775 3099719 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3098775..3099719) Shewanella denitrificans OS217 4019105 YP_563591.1 CDS Sden_2589 NC_007954.1 3099952 3100596 R receptor for colicin S4; outer membrane protein W complement(3099952..3100596) Shewanella denitrificans OS217 4019106 YP_563592.1 CDS Sden_2590 NC_007954.1 3100828 3101433 R hypothetical protein complement(3100828..3101433) Shewanella denitrificans OS217 4019107 YP_563593.1 CDS Sden_2591 NC_007954.1 3101492 3102142 R maleylacetoacetate isomerase complement(3101492..3102142) Shewanella denitrificans OS217 4019108 YP_563594.1 CDS Sden_2592 NC_007954.1 3102250 3103236 R fumarylacetoacetate (FAA) hydrolase complement(3102250..3103236) Shewanella denitrificans OS217 4019109 YP_563595.1 CDS Sden_2593 NC_007954.1 3103469 3105007 R sigma-54 factor, interaction region complement(3103469..3105007) Shewanella denitrificans OS217 4019110 YP_563596.1 CDS phhB NC_007954.1 3105235 3105573 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3105235..3105573) Shewanella denitrificans OS217 4019111 YP_563597.1 CDS phhA NC_007954.1 3105635 3106426 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(3105635..3106426) Shewanella denitrificans OS217 4019112 YP_563598.1 CDS Sden_2596 NC_007954.1 3106737 3107642 D UTP-glucose-1-phosphate uridylyltransferase 3106737..3107642 Shewanella denitrificans OS217 4019113 YP_563599.1 CDS Sden_2597 NC_007954.1 3107644 3108660 D UDP-glucose 4-epimerase 3107644..3108660 Shewanella denitrificans OS217 4019114 YP_563600.1 CDS Sden_2598 NC_007954.1 3108712 3109197 D ferredoxin-type protein NapF 3108712..3109197 Shewanella denitrificans OS217 4019115 YP_563601.1 CDS Sden_2599 NC_007954.1 3109234 3109893 R hypothetical protein complement(3109234..3109893) Shewanella denitrificans OS217 4019116 YP_563602.1 CDS Sden_2600 NC_007954.1 3110037 3110831 R hypothetical protein complement(3110037..3110831) Shewanella denitrificans OS217 4019117 YP_563603.1 CDS Sden_2601 NC_007954.1 3111044 3111571 D hypothetical protein 3111044..3111571 Shewanella denitrificans OS217 4019118 YP_563604.1 CDS Sden_2602 NC_007954.1 3111796 3112380 R hypothetical protein complement(3111796..3112380) Shewanella denitrificans OS217 4019119 YP_563605.1 CDS Sden_2603 NC_007954.1 3113124 3114026 R catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase complement(3113124..3114026) Shewanella denitrificans OS217 4019120 YP_563606.1 CDS Sden_2604 NC_007954.1 3114385 3116469 R glycoside hydrolase family protein complement(3114385..3116469) Shewanella denitrificans OS217 4019121 YP_563607.1 CDS Sden_2605 NC_007954.1 3116619 3119219 R Beta-glucosidase complement(3116619..3119219) Shewanella denitrificans OS217 4019122 YP_563608.1 CDS Sden_2606 NC_007954.1 3119223 3120530 R glucose/galactose transporter complement(3119223..3120530) Shewanella denitrificans OS217 4019123 YP_563609.1 CDS Sden_2607 NC_007954.1 3120885 3122216 D Beta-glucosidase 3120885..3122216 Shewanella denitrificans OS217 4019124 YP_563610.1 CDS Sden_2608 NC_007954.1 3122307 3123635 D sugar (glycoside-Pentoside-hexuronide) transporter 3122307..3123635 Shewanella denitrificans OS217 4019125 YP_563611.1 CDS Sden_2609 NC_007954.1 3123689 3124717 D periplasmic binding protein/LacI transcriptional regulator 3123689..3124717 Shewanella denitrificans OS217 4019126 YP_563612.1 CDS Sden_2610 NC_007954.1 3125198 3128170 D TonB-dependent receptor 3125198..3128170 Shewanella denitrificans OS217 4019127 YP_563613.1 CDS Sden_2611 NC_007954.1 3128310 3129125 R 3'(2'),5'-bisphosphate nucleotidase complement(3128310..3129125) Shewanella denitrificans OS217 4019128 YP_563614.1 CDS Sden_2612 NC_007954.1 3129514 3130092 D pesticin domain-containing protein 3129514..3130092 Shewanella denitrificans OS217 4019129 YP_563615.1 CDS Sden_2613 NC_007954.1 3130240 3130773 R hypothetical protein complement(3130240..3130773) Shewanella denitrificans OS217 4019130 YP_563616.1 CDS Sden_2614 NC_007954.1 3130836 3132785 R potassium efflux system protein complement(3130836..3132785) Shewanella denitrificans OS217 4019131 YP_563617.1 CDS Sden_2615 NC_007954.1 3133033 3133917 D GGDEF domain-containing protein 3133033..3133917 Shewanella denitrificans OS217 4019132 YP_563618.1 CDS Sden_2616 NC_007954.1 3134500 3135600 D peptidyl-Lys metalloendopeptidase 3134500..3135600 Shewanella denitrificans OS217 4019133 YP_563619.1 CDS Sden_2617 NC_007954.1 3135757 3136269 D hypothetical protein 3135757..3136269 Shewanella denitrificans OS217 4019134 YP_563620.1 CDS Sden_2618 NC_007954.1 3136432 3136848 R glutathione-dependent formaldehyde-activating, GFA complement(3136432..3136848) Shewanella denitrificans OS217 4019135 YP_563621.1 CDS Sden_2619 NC_007954.1 3137002 3137517 R GCN5-related N-acetyltransferase complement(3137002..3137517) Shewanella denitrificans OS217 4019136 YP_563622.1 CDS Sden_2620 NC_007954.1 3137665 3138006 R hypothetical protein complement(3137665..3138006) Shewanella denitrificans OS217 4019137 YP_563623.1 CDS Sden_2621 NC_007954.1 3138185 3138583 R hypothetical protein complement(3138185..3138583) Shewanella denitrificans OS217 4019138 YP_563624.1 CDS Sden_2622 NC_007954.1 3138975 3140273 D peptidase M23B 3138975..3140273 Shewanella denitrificans OS217 4019139 YP_563625.1 CDS Sden_2623 NC_007954.1 3140435 3140962 R GCN5-related N-acetyltransferase complement(3140435..3140962) Shewanella denitrificans OS217 4019140 YP_563626.1 CDS Sden_2624 NC_007954.1 3141319 3141762 R hypothetical protein complement(3141319..3141762) Shewanella denitrificans OS217 4019141 YP_563627.1 CDS Sden_2625 NC_007954.1 3142421 3143557 R 4'-phosphopantetheinyl transferase complement(3142421..3143557) Shewanella denitrificans OS217 4019142 YP_563628.1 CDS Sden_2626 NC_007954.1 3143850 3144860 D transcriptional regulator 3143850..3144860 Shewanella denitrificans OS217 4019143 YP_563629.1 CDS Sden_2627 NC_007954.1 3144841 3152835 D beta-ketoacyl synthase 3144841..3152835 Shewanella denitrificans OS217 4019144 YP_563630.1 CDS Sden_2628 NC_007954.1 3152832 3155057 D omega-3 polyunsaturated fatty acid synthase PfaB 3152832..3155057 Shewanella denitrificans OS217 4019145 YP_563631.1 CDS Sden_2629 NC_007954.1 3155054 3160993 D 3-hydroxyacyl-ACP dehydratase 3155054..3160993 Shewanella denitrificans OS217 4019146 YP_563632.1 CDS Sden_2630 NC_007954.1 3161018 3162646 D hypothetical protein 3161018..3162646 Shewanella denitrificans OS217 4019147 YP_563633.1 CDS Sden_2631 NC_007954.1 3162720 3162977 D hypothetical protein 3162720..3162977 Shewanella denitrificans OS217 4019148 YP_563634.1 CDS Sden_2632 NC_007954.1 3163213 3163503 R hypothetical protein complement(3163213..3163503) Shewanella denitrificans OS217 4019149 YP_563635.1 CDS Sden_2633 NC_007954.1 3163667 3163930 D hypothetical protein 3163667..3163930 Shewanella denitrificans OS217 4019150 YP_563636.1 CDS Sden_2634 NC_007954.1 3163943 3164656 D sigma-70, region 4 type 2 3163943..3164656 Shewanella denitrificans OS217 4019151 YP_563637.1 CDS Sden_2635 NC_007954.1 3164713 3164967 D hypothetical protein 3164713..3164967 Shewanella denitrificans OS217 4019152 YP_563638.1 CDS Sden_2636 NC_007954.1 3165324 3166064 D hypothetical protein 3165324..3166064 Shewanella denitrificans OS217 4019153 YP_563639.1 CDS Sden_2637 NC_007954.1 3166047 3166718 R fumarylacetoacetate (FAA) hydrolase complement(3166047..3166718) Shewanella denitrificans OS217 4019154 YP_563640.1 CDS Sden_2638 NC_007954.1 3166995 3169022 D chemotaxis sensory transducer 3166995..3169022 Shewanella denitrificans OS217 4019155 YP_563641.1 CDS Sden_2639 NC_007954.1 3169164 3170174 R succinylglutamate desuccinylase/aspartoacylase complement(3169164..3170174) Shewanella denitrificans OS217 4019156 YP_563642.1 CDS Sden_2640 NC_007954.1 3170174 3171079 R S6 modification enzyme RimK complement(3170174..3171079) Shewanella denitrificans OS217 4019157 YP_563643.1 CDS Sden_2641 NC_007954.1 3171081 3171512 R hypothetical protein complement(3171081..3171512) Shewanella denitrificans OS217 4019158 YP_563644.1 CDS Sden_2642 NC_007954.1 3172025 3172711 D hypothetical protein 3172025..3172711 Shewanella denitrificans OS217 4019159 YP_563645.1 CDS Sden_2643 NC_007954.1 3172971 3174365 D Fmu (Sun) 3172971..3174365 Shewanella denitrificans OS217 4019160 YP_563646.1 CDS Sden_2644 NC_007954.1 3174525 3175535 R UDP-glucose 4-epimerase complement(3174525..3175535) Shewanella denitrificans OS217 4019161 YP_563647.1 CDS Sden_2645 NC_007954.1 3175532 3177481 R polysaccharide biosynthesis protein CapD complement(3175532..3177481) Shewanella denitrificans OS217 4019162 YP_563648.1 CDS Sden_2646 NC_007954.1 3177641 3178819 R DegT/DnrJ/EryC1/StrS aminotransferase complement(3177641..3178819) Shewanella denitrificans OS217 4019163 YP_563649.1 CDS Sden_2647 NC_007954.1 3178865 3179506 R acetyltransferase complement(3178865..3179506) Shewanella denitrificans OS217 4019164 YP_563650.1 CDS Sden_2648 NC_007954.1 3179496 3180098 R UDP-phosphate galactosephosphotransferase complement(3179496..3180098) Shewanella denitrificans OS217 4019165 YP_563651.1 CDS Sden_2649 NC_007954.1 3180091 3181236 R glycosyl transferase, group 1 complement(3180091..3181236) Shewanella denitrificans OS217 4019166 YP_563652.1 CDS Sden_2650 NC_007954.1 3181366 3182439 R glycosyl transferase, group 1 complement(3181366..3182439) Shewanella denitrificans OS217 4019167 YP_563653.1 CDS Sden_2651 NC_007954.1 3182468 3183742 R hypothetical protein complement(3182468..3183742) Shewanella denitrificans OS217 4019168 YP_563654.1 CDS Sden_2652 NC_007954.1 3183745 3184617 R glycosyl transferase family protein complement(3183745..3184617) Shewanella denitrificans OS217 4019169 YP_563655.1 CDS Sden_2653 NC_007954.1 3184640 3185869 R hypothetical protein complement(3184640..3185869) Shewanella denitrificans OS217 4019170 YP_563656.1 CDS Sden_2654 NC_007954.1 3185907 3187040 R DegT/DnrJ/EryC1/StrS aminotransferase complement(3185907..3187040) Shewanella denitrificans OS217 4019171 YP_563657.1 CDS Sden_2655 NC_007954.1 3187044 3187472 R hypothetical protein complement(3187044..3187472) Shewanella denitrificans OS217 4019172 YP_563658.1 CDS Sden_2656 NC_007954.1 3187472 3188572 R NAD-dependent epimerase/dehydratase complement(3187472..3188572) Shewanella denitrificans OS217 4019173 YP_563659.1 CDS Sden_2657 NC_007954.1 3188577 3189347 R nucleotidyl transferase complement(3188577..3189347) Shewanella denitrificans OS217 4019174 YP_563660.1 CDS Sden_2658 NC_007954.1 3189382 3190485 R DegT/DnrJ/EryC1/StrS aminotransferase complement(3189382..3190485) Shewanella denitrificans OS217 4019175 YP_563661.1 CDS Sden_2659 NC_007954.1 3190485 3191399 R WxcM-like protein complement(3190485..3191399) Shewanella denitrificans OS217 4019176 YP_563662.1 CDS Sden_2660 NC_007954.1 3191413 3191952 R dTDP-4-dehydrorhamnose 3,5-epimerase complement(3191413..3191952) Shewanella denitrificans OS217 4019177 YP_563663.1 CDS Sden_2661 NC_007954.1 3191953 3192828 R dTDP-4-dehydrorhamnose reductase complement(3191953..3192828) Shewanella denitrificans OS217 4019178 YP_563664.1 CDS Sden_2662 NC_007954.1 3192830 3193699 R glucose-1-phosphate thymidylyltransferase complement(3192830..3193699) Shewanella denitrificans OS217 4019179 YP_563665.1 CDS Sden_2663 NC_007954.1 3193784 3194872 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase complement(3193784..3194872) Shewanella denitrificans OS217 4019180 YP_563666.1 CDS Sden_2664 NC_007954.1 3194869 3196326 R hypothetical protein complement(3194869..3196326) Shewanella denitrificans OS217 4019181 YP_563667.1 CDS Sden_2665 NC_007954.1 3196336 3197382 R hypothetical protein complement(3196336..3197382) Shewanella denitrificans OS217 4019182 YP_563668.1 CDS Sden_2666 NC_007954.1 3197407 3198129 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(3197407..3198129) Shewanella denitrificans OS217 4019183 YP_563669.1 CDS Sden_2667 NC_007954.1 3198139 3198810 R haloacid dehalogenase-like hydrolase complement(3198139..3198810) Shewanella denitrificans OS217 4019184 YP_563670.1 CDS Sden_2668 NC_007954.1 3198794 3200413 R pyruvate carboxyltransferase complement(3198794..3200413) Shewanella denitrificans OS217 4019185 YP_563671.1 CDS Sden_2669 NC_007954.1 3200713 3201687 R lipopolysaccharide biosynthesis complement(3200713..3201687) Shewanella denitrificans OS217 4019186 YP_563672.1 CDS Sden_2670 NC_007954.1 3201788 3202183 R crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein complement(3201788..3202183) Shewanella denitrificans OS217 4019187 YP_563673.1 CDS Sden_2671 NC_007954.1 3202272 3205031 R polysaccharide export protein complement(3202272..3205031) Shewanella denitrificans OS217 4019188 YP_563674.1 CDS Sden_2672 NC_007954.1 3205850 3206350 R transcriptional activator RfaH complement(3205850..3206350) Shewanella denitrificans OS217 4019189 YP_563675.1 CDS Sden_2673 NC_007954.1 3206624 3207049 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(3206624..3207049) Shewanella denitrificans OS217 4019190 YP_563676.1 CDS Sden_2674 NC_007954.1 3207207 3207761 R hypothetical protein complement(3207207..3207761) Shewanella denitrificans OS217 4019191 YP_563677.1 CDS Sden_2675 NC_007954.1 3207786 3208151 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(3207786..3208151) Shewanella denitrificans OS217 4019192 YP_563678.1 CDS Sden_2676 NC_007954.1 3208452 3209009 D hypothetical protein 3208452..3209009 Shewanella denitrificans OS217 4019193 YP_563679.1 CDS Sden_2677 NC_007954.1 3209041 3209556 R GCN5-related N-acetyltransferase complement(3209041..3209556) Shewanella denitrificans OS217 4019194 YP_563680.1 CDS Sden_2678 NC_007954.1 3209556 3210572 R ferrochelatase complement(3209556..3210572) Shewanella denitrificans OS217 4019195 YP_563681.1 CDS Sden_2679 NC_007954.1 3210682 3211260 R glutathione peroxidase complement(3210682..3211260) Shewanella denitrificans OS217 4019196 YP_563682.1 CDS Sden_2680 NC_007954.1 3211623 3212735 R twitching motility protein complement(3211623..3212735) Shewanella denitrificans OS217 4019197 YP_563683.1 CDS Sden_2681 NC_007954.1 3212747 3213796 R twitching motility protein complement(3212747..3213796) Shewanella denitrificans OS217 4019198 YP_563684.1 CDS Sden_2682 NC_007954.1 3213819 3214526 D hypothetical protein 3213819..3214526 Shewanella denitrificans OS217 4019199 YP_563685.1 CDS Sden_2683 NC_007954.1 3214654 3215472 D pyrroline-5-carboxylate reductase 3214654..3215472 Shewanella denitrificans OS217 4019200 YP_563686.1 CDS Sden_2684 NC_007954.1 3215647 3216201 D protein of unknown function YGGT 3215647..3216201 Shewanella denitrificans OS217 4019201 YP_563687.1 CDS Sden_2685 NC_007954.1 3216376 3216825 D hypothetical protein 3216376..3216825 Shewanella denitrificans OS217 4019202 YP_563688.1 CDS Sden_2686 NC_007954.1 3217005 3217607 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3217005..3217607 Shewanella denitrificans OS217 4019203 YP_563689.1 CDS Sden_2687 NC_007954.1 3217617 3218819 D oxygen-independent coproporphyrinogen III oxidase 3217617..3218819 Shewanella denitrificans OS217 4019204 YP_563690.1 CDS Sden_2688 NC_007954.1 3218887 3220185 R ATP-binding region, ATPase-like protein complement(3218887..3220185) Shewanella denitrificans OS217 4019205 YP_563691.1 CDS Sden_2689 NC_007954.1 3220311 3221000 R phosphate regulon transcriptional regulatory protein phoB complement(3220311..3221000) Shewanella denitrificans OS217 4019206 YP_563692.1 CDS Sden_2690 NC_007954.1 3221187 3222140 R porin complement(3221187..3222140) Shewanella denitrificans OS217 4019207 YP_563693.1 CDS rdgC NC_007954.1 3222511 3223422 D Required for efficient pilin antigenic variation; recombination associated protein 3222511..3223422 Shewanella denitrificans OS217 4019208 YP_563694.1 CDS Sden_2692 NC_007954.1 3223712 3225586 D hypothetical protein 3223712..3225586 Shewanella denitrificans OS217 4019209 YP_563695.1 CDS Sden_2693 NC_007954.1 3226177 3227118 R LysR, substrate-binding complement(3226177..3227118) Shewanella denitrificans OS217 4019210 YP_563696.1 CDS Sden_2694 NC_007954.1 3227526 3228350 R hypothetical protein complement(3227526..3228350) Shewanella denitrificans OS217 4019211 YP_563697.1 CDS Sden_2695 NC_007954.1 3228686 3229600 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3228686..3229600) Shewanella denitrificans OS217 4019212 YP_563698.1 CDS Sden_2696 NC_007954.1 3229609 3229935 R hypothetical protein complement(3229609..3229935) Shewanella denitrificans OS217 4019213 YP_563699.1 CDS trmB NC_007954.1 3229989 3230705 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3229989..3230705) Shewanella denitrificans OS217 4019214 YP_563700.1 CDS Sden_2698 NC_007954.1 3230888 3231961 D A/G-specific adenine glycosylase 3230888..3231961 Shewanella denitrificans OS217 4019215 YP_563701.1 CDS Sden_2699 NC_007954.1 3231993 3232268 D hypothetical protein 3231993..3232268 Shewanella denitrificans OS217 4019216 YP_563702.1 CDS Sden_2700 NC_007954.1 3232815 3233702 D transposase, IS4 3232815..3233702 Shewanella denitrificans OS217 4019219 YP_563703.1 CDS Sden_2701 NC_007954.1 3233836 3234546 R SapC complement(3233836..3234546) Shewanella denitrificans OS217 4019220 YP_563704.1 CDS Sden_2702 NC_007954.1 3234877 3236178 R glucose/galactose transporter complement(3234877..3236178) Shewanella denitrificans OS217 4019221 YP_563705.1 CDS Sden_2703 NC_007954.1 3236413 3237615 R hypothetical protein complement(3236413..3237615) Shewanella denitrificans OS217 4019222 YP_563706.1 CDS Sden_2704 NC_007954.1 3237645 3238808 R N-acetylglucosamine-6-phosphate deacetylase complement(3237645..3238808) Shewanella denitrificans OS217 4019223 YP_563707.1 CDS Sden_2705 NC_007954.1 3238848 3239849 R glutamine-fructose-6-phosphate transaminase (isomerizing) complement(3238848..3239849) Shewanella denitrificans OS217 4019224 YP_563708.1 CDS Sden_2706 NC_007954.1 3239914 3240813 R ATPase, BadF/BadG/BcrA/BcrD type complement(3239914..3240813) Shewanella denitrificans OS217 4019225 YP_563709.1 CDS Sden_2707 NC_007954.1 3241941 3243488 R tryptophan halogenase complement(3241941..3243488) Shewanella denitrificans OS217 4019226 YP_563710.1 CDS Sden_2708 NC_007954.1 3243546 3246194 R TonB-dependent receptor complement(3243546..3246194) Shewanella denitrificans OS217 4019227 YP_563711.1 CDS Sden_2709 NC_007954.1 3246554 3247597 D periplasmic binding protein/LacI transcriptional regulator 3246554..3247597 Shewanella denitrificans OS217 4019228 YP_563712.1 CDS Sden_2710 NC_007954.1 3247613 3248899 R NADH dehydrogenase complement(3247613..3248899) Shewanella denitrificans OS217 4019229 YP_563713.1 CDS Sden_2711 NC_007954.1 3248973 3249311 R nitrogen regulatory protein P-II complement(3248973..3249311) Shewanella denitrificans OS217 4019230 YP_563714.1 CDS Sden_2712 NC_007954.1 3249558 3250070 D type IV pilus biogenesis protein 3249558..3250070 Shewanella denitrificans OS217 4019231 YP_563715.1 CDS Sden_2713 NC_007954.1 3250200 3250718 D type IV pilus biogenesis protein 3250200..3250718 Shewanella denitrificans OS217 4019232 YP_563716.1 CDS Sden_2714 NC_007954.1 3250842 3251132 R hypothetical protein complement(3250842..3251132) Shewanella denitrificans OS217 4019233 YP_563717.1 CDS Sden_2715 NC_007954.1 3251132 3251521 R methylation complement(3251132..3251521) Shewanella denitrificans OS217 4019234 YP_563718.1 CDS Sden_2716 NC_007954.1 3251526 3255098 R type IV pilin biogenesis protein complement(3251526..3255098) Shewanella denitrificans OS217 4019235 YP_563719.1 CDS Sden_2717 NC_007954.1 3255108 3255536 R type IV pilus assembly protein PilX complement(3255108..3255536) Shewanella denitrificans OS217 4019236 YP_563720.1 CDS Sden_2718 NC_007954.1 3255599 3256570 R type IV pilus assembly protein PilW complement(3255599..3256570) Shewanella denitrificans OS217 4019237 YP_563721.1 CDS Sden_2719 NC_007954.1 3256571 3257125 R methylation complement(3256571..3257125) Shewanella denitrificans OS217 4019238 YP_563722.1 CDS ispH NC_007954.1 3257662 3258621 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3257662..3258621) Shewanella denitrificans OS217 4019239 YP_563723.1 CDS Sden_2721 NC_007954.1 3258626 3259051 R peptidylprolyl isomerase, FKBP-type complement(3258626..3259051) Shewanella denitrificans OS217 4019240 YP_563724.1 CDS lspA NC_007954.1 3259202 3259750 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3259202..3259750) Shewanella denitrificans OS217 4019241 YP_563725.1 CDS ileS NC_007954.1 3259737 3262568 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(3259737..3262568) Shewanella denitrificans OS217 4019242 YP_563726.1 CDS Sden_2724 NC_007954.1 3262592 3263527 R riboflavin biosynthesis protein RibF complement(3262592..3263527) Shewanella denitrificans OS217 4019243 YP_563727.1 CDS Sden_2725 NC_007954.1 3263601 3265160 R integral membrane protein MviN complement(3263601..3265160) Shewanella denitrificans OS217 4019244 YP_563728.1 CDS rpsT NC_007954.1 3265422 3265688 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3265422..3265688 Shewanella denitrificans OS217 4019245 YP_563729.1 CDS Sden_2727 NC_007954.1 3265845 3266141 R regulatory protein, ArsR complement(3265845..3266141) Shewanella denitrificans OS217 4019246 YP_563730.1 CDS Sden_2728 NC_007954.1 3266288 3267733 D peptidase M28 3266288..3267733 Shewanella denitrificans OS217 4019247 YP_563731.1 CDS Sden_2729 NC_007954.1 3267849 3268625 R hypothetical protein complement(3267849..3268625) Shewanella denitrificans OS217 4019248 YP_563732.1 CDS Sden_2730 NC_007954.1 3268724 3270238 R amino acid carrier protein complement(3268724..3270238) Shewanella denitrificans OS217 4019249 YP_563733.1 CDS Sden_2731 NC_007954.1 3270590 3272956 D phosphoketolase 3270590..3272956 Shewanella denitrificans OS217 4019250 YP_563734.1 CDS Sden_2732 NC_007954.1 3273232 3274353 D OmpA/MotB 3273232..3274353 Shewanella denitrificans OS217 4019251 YP_563735.1 CDS Sden_2733 NC_007954.1 3274874 3276007 D OmpA/MotB 3274874..3276007 Shewanella denitrificans OS217 4019252 YP_563736.1 CDS Sden_2734 NC_007954.1 3276329 3277282 D transaldolase B 3276329..3277282 Shewanella denitrificans OS217 4019253 YP_563737.1 CDS pgi NC_007954.1 3277299 3278936 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3277299..3278936 Shewanella denitrificans OS217 4019254 YP_563738.1 CDS Sden_2736 NC_007954.1 3279124 3279303 D hypothetical protein 3279124..3279303 Shewanella denitrificans OS217 4019255 YP_563739.1 CDS Sden_2737 NC_007954.1 3279463 3280008 R hemerythrin HHE cation binding region complement(3279463..3280008) Shewanella denitrificans OS217 4019256 YP_563740.1 CDS Sden_2738 NC_007954.1 3280188 3281468 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(3280188..3281468) Shewanella denitrificans OS217 4019257 YP_563741.1 CDS Sden_2739 NC_007954.1 3281574 3282560 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(3281574..3282560) Shewanella denitrificans OS217 4019258 YP_563742.1 CDS thrA NC_007954.1 3282563 3285040 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homeserine dehydrogenase I complement(3282563..3285040) Shewanella denitrificans OS217 4019259 YP_563743.1 CDS Sden_2741 NC_007954.1 3285755 3286237 D peptidylprolyl isomerase, FKBP-type 3285755..3286237 Shewanella denitrificans OS217 4019260 YP_563744.1 CDS Sden_2742 NC_007954.1 3286497 3286871 D hypothetical protein 3286497..3286871 Shewanella denitrificans OS217 4019261 YP_563745.1 CDS Sden_2743 NC_007954.1 3286963 3287238 R Trp repressor complement(3286963..3287238) Shewanella denitrificans OS217 4019262 YP_563746.1 CDS Sden_2744 NC_007954.1 3287506 3287955 D cytochrome c, class II 3287506..3287955 Shewanella denitrificans OS217 4019263 YP_563747.1 CDS Sden_2745 NC_007954.1 3288025 3288720 R cytochrome B561 complement(3288025..3288720) Shewanella denitrificans OS217 4019264 YP_563748.1 CDS Sden_2746 NC_007954.1 3289067 3289420 D ribosomal subunit interface protein 3289067..3289420 Shewanella denitrificans OS217 4019265 YP_563749.1 CDS Sden_2747 NC_007954.1 3289700 3291688 D chorismate mutase 3289700..3291688 Shewanella denitrificans OS217 4019266 YP_563750.1 CDS Sden_2748 NC_007954.1 3291792 3292127 R hypothetical protein complement(3291792..3292127) Shewanella denitrificans OS217 4019267 YP_563751.1 CDS tyrA NC_007954.1 3292244 3293398 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3292244..3293398) Shewanella denitrificans OS217 4019268 YP_563752.1 CDS Sden_2750 NC_007954.1 3293399 3294490 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3293399..3294490) Shewanella denitrificans OS217 4019269 YP_563753.1 CDS rplS NC_007954.1 3294684 3295037 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3294684..3295037) Shewanella denitrificans OS217 4019270 YP_563754.1 CDS trmD NC_007954.1 3295072 3295818 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3295072..3295818) Shewanella denitrificans OS217 4019271 YP_563755.1 CDS rimM NC_007954.1 3295834 3296364 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3295834..3296364) Shewanella denitrificans OS217 4019272 YP_563756.1 CDS rpsP NC_007954.1 3296386 3296637 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3296386..3296637) Shewanella denitrificans OS217 4019273 YP_563757.1 CDS Sden_2755 NC_007954.1 3296928 3298301 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3296928..3298301) Shewanella denitrificans OS217 4019274 YP_563758.1 CDS Sden_2756 NC_007954.1 3298631 3299419 D cytochrome c assembly protein 3298631..3299419 Shewanella denitrificans OS217 4019275 YP_563759.1 CDS Sden_2757 NC_007954.1 3299548 3300834 D hypothetical protein 3299548..3300834 Shewanella denitrificans OS217 4019276 YP_563760.1 CDS Sden_2758 NC_007954.1 3302415 3302927 R hypothetical protein complement(3302415..3302927) Shewanella denitrificans OS217 4019277 YP_563761.1 CDS Sden_2759 NC_007954.1 3302939 3303415 R hypothetical protein complement(3302939..3303415) Shewanella denitrificans OS217 4019278 YP_563762.1 CDS Sden_2760 NC_007954.1 3303537 3303977 R GCN5-related N-acetyltransferase complement(3303537..3303977) Shewanella denitrificans OS217 4019279 YP_563763.1 CDS Sden_2761 NC_007954.1 3304113 3304646 R hypothetical protein complement(3304113..3304646) Shewanella denitrificans OS217 4019280 YP_563764.1 CDS acpS NC_007954.1 3304803 3305183 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3304803..3305183) Shewanella denitrificans OS217 4019281 YP_563765.1 CDS Sden_2763 NC_007954.1 3305183 3305920 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3305183..3305920) Shewanella denitrificans OS217 4019282 YP_563766.1 CDS Sden_2764 NC_007954.1 3305995 3306717 R DNA repair protein RecO complement(3305995..3306717) Shewanella denitrificans OS217 4019283 YP_563767.1 CDS era NC_007954.1 3306781 3307785 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3306781..3307785) Shewanella denitrificans OS217 4019284 YP_563768.1 CDS rnc NC_007954.1 3307782 3308462 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3307782..3308462) Shewanella denitrificans OS217 4019285 YP_563769.1 CDS Sden_2767 NC_007954.1 3308462 3309376 R peptidase S26A, signal peptidase I complement(3308462..3309376) Shewanella denitrificans OS217 4019286 YP_563770.1 CDS Sden_2768 NC_007954.1 3309658 3311448 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3309658..3311448) Shewanella denitrificans OS217 4019287 YP_563771.1 CDS Sden_2769 NC_007954.1 3311576 3312109 R positive regulator of sigma(E), RseC/MucC complement(3311576..3312109) Shewanella denitrificans OS217 4019288 YP_563772.1 CDS Sden_2770 NC_007954.1 3312106 3313038 R MucB/RseB complement(3312106..3313038) Shewanella denitrificans OS217 4019289 YP_563773.1 CDS Sden_2771 NC_007954.1 3313142 3313762 R sigma-E factor negative regulatory protein complement(3313142..3313762) Shewanella denitrificans OS217 4019290 YP_563774.1 CDS algU NC_007954.1 3313787 3314365 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU complement(3313787..3314365) Shewanella denitrificans OS217 4019291 YP_563775.1 CDS Sden_2773 NC_007954.1 3314579 3316192 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3314579..3316192 Shewanella denitrificans OS217 4019292 YP_563776.1 CDS Sden_2774 NC_007954.1 3316207 3316656 R hypothetical protein complement(3316207..3316656) Shewanella denitrificans OS217 4019293 YP_563777.1 CDS Sden_2775 NC_007954.1 3316755 3317003 R hypothetical protein complement(3316755..3317003) Shewanella denitrificans OS217 4019294 YP_563778.1 CDS nhaR NC_007954.1 3317090 3318004 R Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR complement(3317090..3318004) Shewanella denitrificans OS217 4019295 YP_563779.1 CDS Sden_2777 NC_007954.1 3318028 3318408 R hypothetical protein complement(3318028..3318408) Shewanella denitrificans OS217 4019296 YP_563780.1 CDS nhaA NC_007954.1 3318389 3319585 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(3318389..3319585) Shewanella denitrificans OS217 4019297 YP_563781.1 CDS thyA NC_007954.1 3319716 3320510 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3319716..3320510) Shewanella denitrificans OS217 4019298 YP_563782.1 CDS Sden_2780 NC_007954.1 3320606 3321400 R hypothetical protein complement(3320606..3321400) Shewanella denitrificans OS217 4019299 YP_563783.1 CDS Sden_2781 NC_007954.1 3321527 3323851 R phosphoenolpyruvate-protein phosphotransferase complement(3321527..3323851) Shewanella denitrificans OS217 4019300 YP_563784.1 CDS Sden_2782 NC_007954.1 3323880 3324398 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3323880..3324398) Shewanella denitrificans OS217 4019301 YP_563785.1 CDS Sden_2783 NC_007954.1 3325133 3325801 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3325133..3325801 Shewanella denitrificans OS217 4019302 YP_563786.1 CDS Sden_2784 NC_007954.1 3326089 3327117 D adenylate cyclase-related protein 3326089..3327117 Shewanella denitrificans OS217 4019303 YP_563787.1 CDS Sden_2785 NC_007954.1 3327235 3328212 D hypothetical protein 3327235..3328212 Shewanella denitrificans OS217 4019304 YP_563788.1 CDS Sden_2786 NC_007954.1 3328753 3329211 D Appr-1-p processing 3328753..3329211 Shewanella denitrificans OS217 4019305 YP_563789.1 CDS Sden_2787 NC_007954.1 3329222 3330082 D hypothetical protein 3329222..3330082 Shewanella denitrificans OS217 4019306 YP_563790.1 CDS Sden_2788 NC_007954.1 3330805 3331710 R LysR, substrate-binding complement(3330805..3331710) Shewanella denitrificans OS217 4019307 YP_563791.1 CDS Sden_2789 NC_007954.1 3331957 3332319 R hypothetical protein complement(3331957..3332319) Shewanella denitrificans OS217 4019308 YP_563792.1 CDS gltB NC_007954.1 3333056 3337504 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3333056..3337504 Shewanella denitrificans OS217 4019309 YP_563793.1 CDS gltD NC_007954.1 3337509 3338966 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3337509..3338966 Shewanella denitrificans OS217 4019310 YP_563794.1 CDS Sden_2792 NC_007954.1 3339123 3339968 D methyltransferase type 11 3339123..3339968 Shewanella denitrificans OS217 4019311 YP_563795.1 CDS Sden_2793 NC_007954.1 3340099 3340704 R hypothetical protein complement(3340099..3340704) Shewanella denitrificans OS217 4019312 YP_563796.1 CDS Sden_2794 NC_007954.1 3340923 3341579 R nitroreductase complement(3340923..3341579) Shewanella denitrificans OS217 4019313 YP_563797.1 CDS Sden_2795 NC_007954.1 3341769 3342071 R antibiotic biosynthesis monooxygenase complement(3341769..3342071) Shewanella denitrificans OS217 4019314 YP_563798.1 CDS Sden_2796 NC_007954.1 3342224 3342754 D thiol-disulphide oxidoreductase DCC 3342224..3342754 Shewanella denitrificans OS217 4019315 YP_563799.1 CDS Sden_2797 NC_007954.1 3342920 3344011 D acyltransferase 3 3342920..3344011 Shewanella denitrificans OS217 4019316 YP_563800.1 CDS Sden_2798 NC_007954.1 3344124 3344654 R GCN5-related N-acetyltransferase complement(3344124..3344654) Shewanella denitrificans OS217 4019317 YP_563801.1 CDS Sden_2799 NC_007954.1 3344698 3345921 R major facilitator transporter complement(3344698..3345921) Shewanella denitrificans OS217 4019318 YP_563802.1 CDS Sden_2800 NC_007954.1 3346024 3346908 D LysR, substrate-binding 3346024..3346908 Shewanella denitrificans OS217 4019319 YP_563803.1 CDS Sden_2801 NC_007954.1 3347237 3347929 D methylthioadenosine nucleosidase 3347237..3347929 Shewanella denitrificans OS217 4019320 YP_563804.1 CDS Sden_2802 NC_007954.1 3348158 3349156 D CobD-related protein 3348158..3349156 Shewanella denitrificans OS217 4019321 YP_563805.1 CDS Sden_2803 NC_007954.1 3349252 3349641 D hypothetical protein 3349252..3349641 Shewanella denitrificans OS217 4019322 YP_563806.1 CDS Sden_2804 NC_007954.1 3349643 3350269 D hypothetical protein 3349643..3350269 Shewanella denitrificans OS217 4019323 YP_563807.1 CDS Sden_2805 NC_007954.1 3350271 3350744 D hypothetical protein 3350271..3350744 Shewanella denitrificans OS217 4019324 YP_563808.1 CDS Sden_2806 NC_007954.1 3351267 3352280 R transposase IS116/IS110/IS902 complement(3351267..3352280) Shewanella denitrificans OS217 4019325 YP_563809.1 CDS Sden_2807 NC_007954.1 3353197 3354429 R hypothetical protein complement(3353197..3354429) Shewanella denitrificans OS217 4019326 YP_563810.1 CDS Sden_2808 NC_007954.1 3355097 3355498 R hypothetical protein complement(3355097..3355498) Shewanella denitrificans OS217 4019327 YP_563811.1 CDS Sden_2809 NC_007954.1 3355950 3356654 R hypothetical protein complement(3355950..3356654) Shewanella denitrificans OS217 4019328 YP_563812.1 CDS Sden_2810 NC_007954.1 3357494 3358690 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3357494..3358690) Shewanella denitrificans OS217 4019329 YP_563813.1 CDS Sden_2811 NC_007954.1 3358906 3360324 D peptidase M23B 3358906..3360324 Shewanella denitrificans OS217 4019330 YP_563814.1 CDS anmK NC_007954.1 3360333 3361445 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3360333..3361445 Shewanella denitrificans OS217 4019331 YP_563815.1 CDS Sden_2813 NC_007954.1 3361507 3361893 D hypothetical protein 3361507..3361893 Shewanella denitrificans OS217 4019332 YP_563816.1 CDS Sden_2814 NC_007954.1 3361969 3362460 D hypothetical protein 3361969..3362460 Shewanella denitrificans OS217 4019333 YP_563817.1 CDS Sden_2815 NC_007954.1 3362568 3362918 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(3362568..3362918) Shewanella denitrificans OS217 4019334 YP_563818.1 CDS Sden_2816 NC_007954.1 3362921 3363712 R hypothetical protein complement(3362921..3363712) Shewanella denitrificans OS217 4019335 YP_563819.1 CDS Sden_2817 NC_007954.1 3363831 3365555 D Cl- channel, voltage gated 3363831..3365555 Shewanella denitrificans OS217 4019336 YP_563820.1 CDS Sden_2818 NC_007954.1 3365695 3366714 D Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3365695..3366714 Shewanella denitrificans OS217 4019337 YP_563821.1 CDS Sden_2819 NC_007954.1 3366774 3368075 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3366774..3368075 Shewanella denitrificans OS217 4019338 YP_563822.1 CDS Sden_2820 NC_007954.1 3368318 3369565 D citrate transporter 3368318..3369565 Shewanella denitrificans OS217 4019339 YP_563823.1 CDS Sden_2821 NC_007954.1 3369634 3370896 R general secretion pathway protein B complement(3369634..3370896) Shewanella denitrificans OS217 4019340 YP_563824.1 CDS Sden_2822 NC_007954.1 3370896 3372614 R peptidoglycan binding domain-containing protein complement(3370896..3372614) Shewanella denitrificans OS217 4019341 YP_563825.1 CDS Sden_2823 NC_007954.1 3372756 3373997 D polynucleotide adenylyltransferase region 3372756..3373997 Shewanella denitrificans OS217 4019342 YP_563826.1 CDS Sden_2824 NC_007954.1 3374261 3374527 D major outer membrane lipoprotein 3374261..3374527 Shewanella denitrificans OS217 4019343 YP_563827.1 CDS Sden_2825 NC_007954.1 3374863 3375687 R methyltransferase type 11 complement(3374863..3375687) Shewanella denitrificans OS217 4019344 YP_563828.1 CDS Sden_2826 NC_007954.1 3375861 3376661 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(3375861..3376661) Shewanella denitrificans OS217 4019345 YP_563829.1 CDS Sden_2827 NC_007954.1 3376795 3377295 R 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3376795..3377295) Shewanella denitrificans OS217 4019346 YP_563830.1 CDS Sden_2828 NC_007954.1 3377356 3377709 R dihydroneopterin aldolase complement(3377356..3377709) Shewanella denitrificans OS217 4019347 YP_563831.1 CDS Sden_2829 NC_007954.1 3377955 3378569 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3377955..3378569 Shewanella denitrificans OS217 4019348 YP_563832.1 CDS Sden_2830 NC_007954.1 3378682 3379698 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3378682..3379698) Shewanella denitrificans OS217 4019349 YP_563833.1 CDS rpsU NC_007954.1 3379972 3380187 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3379972..3380187 Shewanella denitrificans OS217 4019350 YP_563834.1 CDS Sden_2832 NC_007954.1 3380195 3380638 D hypothetical protein 3380195..3380638 Shewanella denitrificans OS217 4019351 YP_563835.1 CDS Sden_2833 NC_007954.1 3380733 3382457 D DNA primase 3380733..3382457 Shewanella denitrificans OS217 4019352 YP_563836.1 CDS Sden_2834 NC_007954.1 3382604 3384457 D RNA polymerase sigma factor RpoD-like protein 3382604..3384457 Shewanella denitrificans OS217 4019353 YP_563837.1 CDS Sden_2835 NC_007954.1 3385001 3385360 D hypothetical protein 3385001..3385360 Shewanella denitrificans OS217 4019355 YP_563838.1 CDS Sden_2836 NC_007954.1 3385711 3386052 D hypothetical protein 3385711..3386052 Shewanella denitrificans OS217 4019356 YP_563839.1 CDS Sden_2837 NC_007954.1 3386176 3387387 R NnrS complement(3386176..3387387) Shewanella denitrificans OS217 4019357 YP_563840.1 CDS Sden_2838 NC_007954.1 3387615 3389108 R deoxyribodipyrimidine photolyase complement(3387615..3389108) Shewanella denitrificans OS217 4019358 YP_563841.1 CDS Sden_2839 NC_007954.1 3389098 3390060 R hypothetical protein complement(3389098..3390060) Shewanella denitrificans OS217 4019359 YP_563842.1 CDS Sden_2840 NC_007954.1 3390259 3391194 R hypothetical protein complement(3390259..3391194) Shewanella denitrificans OS217 4019360 YP_563843.1 CDS Sden_2841 NC_007954.1 3391412 3391888 D hypothetical protein 3391412..3391888 Shewanella denitrificans OS217 4019361 YP_563844.1 CDS Sden_2842 NC_007954.1 3392065 3392340 R hypothetical protein complement(3392065..3392340) Shewanella denitrificans OS217 4019362 YP_563845.1 CDS Sden_2843 NC_007954.1 3392649 3393572 R polysaccharide deacetylase complement(3392649..3393572) Shewanella denitrificans OS217 4019363 YP_563846.1 CDS Sden_2844 NC_007954.1 3393672 3394427 R ThiJ/PfpI complement(3393672..3394427) Shewanella denitrificans OS217 4019364 YP_563847.1 CDS Sden_2845 NC_007954.1 3394568 3395134 R hypothetical protein complement(3394568..3395134) Shewanella denitrificans OS217 4019365 YP_563848.1 CDS Sden_2846 NC_007954.1 3395201 3396559 R ATP-binding region, ATPase-like protein complement(3395201..3396559) Shewanella denitrificans OS217 4019366 YP_563849.1 CDS Sden_2847 NC_007954.1 3396556 3398046 R sigma-54 factor, interaction region complement(3396556..3398046) Shewanella denitrificans OS217 4019367 YP_563850.1 CDS Sden_2848 NC_007954.1 3398196 3399404 R hypothetical protein complement(3398196..3399404) Shewanella denitrificans OS217 4019368 YP_563851.1 CDS Sden_2849 NC_007954.1 3399414 3400724 R hypothetical protein complement(3399414..3400724) Shewanella denitrificans OS217 4019369 YP_563852.1 CDS Sden_2850 NC_007954.1 3400735 3401457 R ABC transporter related complement(3400735..3401457) Shewanella denitrificans OS217 4019370 YP_563853.1 CDS Sden_2851 NC_007954.1 3401470 3401715 R hypothetical protein complement(3401470..3401715) Shewanella denitrificans OS217 4019371 YP_563854.1 CDS Sden_2852 NC_007954.1 3401722 3402981 R secretion protein HlyD complement(3401722..3402981) Shewanella denitrificans OS217 4019372 YP_563855.1 CDS Sden_2853 NC_007954.1 3403256 3404140 R periplasmic binding protein complement(3403256..3404140) Shewanella denitrificans OS217 4019373 YP_563856.1 CDS Sden_2854 NC_007954.1 3404308 3404850 D isochorismatase hydrolase 3404308..3404850 Shewanella denitrificans OS217 4019374 YP_563857.1 CDS Sden_2855 NC_007954.1 3404906 3405379 R ribosomal-protein-alanine acetyltransferase complement(3404906..3405379) Shewanella denitrificans OS217 4019375 YP_563858.1 CDS Sden_2856 NC_007954.1 3405424 3405774 R hypothetical protein complement(3405424..3405774) Shewanella denitrificans OS217 4019376 YP_563859.1 CDS Sden_2857 NC_007954.1 3406093 3406536 D ABC-type phosphate transport system, periplasmic component 3406093..3406536 Shewanella denitrificans OS217 4019377 YP_563860.1 CDS Sden_2858 NC_007954.1 3406554 3407747 D hypothetical protein 3406554..3407747 Shewanella denitrificans OS217 4019378 YP_563861.1 CDS Sden_2859 NC_007954.1 3414359 3415165 R CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3414359..3415165) Shewanella denitrificans OS217 4019382 YP_563862.1 CDS Sden_2860 NC_007954.1 3415258 3415710 D hypothetical protein 3415258..3415710 Shewanella denitrificans OS217 4019383 YP_563863.1 CDS Sden_2861 NC_007954.1 3415861 3418449 R ATPase AAA-2 complement(3415861..3418449) Shewanella denitrificans OS217 4019384 YP_563864.1 CDS Sden_2862 NC_007954.1 3418632 3419417 R hypothetical protein complement(3418632..3419417) Shewanella denitrificans OS217 4019385 YP_563865.1 CDS Sden_2863 NC_007954.1 3419700 3420674 R pseudouridine synthase, RluD complement(3419700..3420674) Shewanella denitrificans OS217 4019386 YP_563866.1 CDS Sden_2864 NC_007954.1 3420799 3421560 D lipoprotein 3420799..3421560 Shewanella denitrificans OS217 4019387 YP_563867.1 CDS Sden_2865 NC_007954.1 3422632 3423222 D hypothetical protein 3422632..3423222 Shewanella denitrificans OS217 4019390 YP_563868.1 CDS Sden_2866 NC_007954.1 3423300 3423761 D DNA polymerase III chi subunit, HolC 3423300..3423761 Shewanella denitrificans OS217 4019391 YP_563869.1 CDS valS NC_007954.1 3423795 3426701 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3423795..3426701 Shewanella denitrificans OS217 4019392 YP_563870.1 CDS Sden_2868 NC_007954.1 3426783 3428405 R peptidase S8/S53 subtilisin kexin sedolisin complement(3426783..3428405) Shewanella denitrificans OS217 4019393 YP_563871.1 CDS Sden_2869 NC_007954.1 3428844 3429512 R hypothetical protein complement(3428844..3429512) Shewanella denitrificans OS217 4019394 YP_563872.1 CDS Sden_2870 NC_007954.1 3430475 3430942 D hypothetical protein 3430475..3430942 Shewanella denitrificans OS217 4019395 YP_563873.1 CDS Sden_2871 NC_007954.1 3431089 3431946 D hypothetical protein 3431089..3431946 Shewanella denitrificans OS217 4019396 YP_563874.1 CDS Sden_2872 NC_007954.1 3432567 3435197 D hypothetical protein 3432567..3435197 Shewanella denitrificans OS217 4019397 YP_563875.1 CDS Sden_2873 NC_007954.1 3435293 3435742 D hypothetical protein 3435293..3435742 Shewanella denitrificans OS217 4019398 YP_563876.1 CDS Sden_2874 NC_007954.1 3435844 3436182 D metal-binding protein 3435844..3436182 Shewanella denitrificans OS217 4019399 YP_563877.1 CDS Sden_2875 NC_007954.1 3436310 3437863 D major facilitator transporter 3436310..3437863 Shewanella denitrificans OS217 4019400 YP_563878.1 CDS Sden_2876 NC_007954.1 3437860 3438564 R pseudouridine synthase, Rsu complement(3437860..3438564) Shewanella denitrificans OS217 4019401 YP_563879.1 CDS Sden_2877 NC_007954.1 3438684 3441308 D protein-P-II uridylyltransferase 3438684..3441308 Shewanella denitrificans OS217 4019402 YP_563880.1 CDS Sden_2878 NC_007954.1 3441354 3441836 D hypothetical protein 3441354..3441836 Shewanella denitrificans OS217 4019403 YP_563881.1 CDS Sden_2879 NC_007954.1 3441904 3442158 D hypothetical protein 3441904..3442158 Shewanella denitrificans OS217 4019404 YP_563882.1 CDS Sden_2880 NC_007954.1 3442310 3442630 R hypothetical protein complement(3442310..3442630) Shewanella denitrificans OS217 4019405 YP_563883.1 CDS Sden_2881 NC_007954.1 3442743 3443702 R D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding complement(3442743..3443702) Shewanella denitrificans OS217 4019406 YP_563884.1 CDS djlA NC_007954.1 3443758 3444537 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(3443758..3444537) Shewanella denitrificans OS217 4019407 YP_563885.1 CDS Sden_2883 NC_007954.1 3444556 3445275 R nucleotidyl transferase complement(3444556..3445275) Shewanella denitrificans OS217 4019408 YP_563886.1 CDS Sden_2884 NC_007954.1 3445272 3446411 R aminoglycoside phosphotransferase complement(3445272..3446411) Shewanella denitrificans OS217 4019409 YP_563887.1 CDS Sden_2885 NC_007954.1 3446555 3448855 D organic solvent tolerance protein 3446555..3448855 Shewanella denitrificans OS217 4019410 YP_563888.1 CDS Sden_2886 NC_007954.1 3449000 3450304 D PpiC-type peptidyl-prolyl cis-trans isomerase 3449000..3450304 Shewanella denitrificans OS217 4019411 YP_563889.1 CDS pdxA NC_007954.1 3450314 3451300 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3450314..3451300 Shewanella denitrificans OS217 4019412 YP_563890.1 CDS ksgA NC_007954.1 3451307 3452110 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3451307..3452110 Shewanella denitrificans OS217 4019413 YP_563891.1 CDS apaG NC_007954.1 3452187 3452567 D protein associated with Co2+ and Mg2+ efflux; ApaG 3452187..3452567 Shewanella denitrificans OS217 4019414 YP_563892.1 CDS apaH NC_007954.1 3452567 3453388 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3452567..3453388 Shewanella denitrificans OS217 4019415 YP_563893.1 CDS Sden_2891 NC_007954.1 3453510 3455531 D chemotaxis sensory transducer 3453510..3455531 Shewanella denitrificans OS217 4019416 YP_563894.1 CDS Sden_2892 NC_007954.1 3455643 3456290 R NADH-flavin reductase complement(3455643..3456290) Shewanella denitrificans OS217 4019417 YP_563895.1 CDS Sden_2893 NC_007954.1 3456420 3457316 D LysR, substrate-binding 3456420..3457316 Shewanella denitrificans OS217 4019418 YP_563896.1 CDS Sden_2894 NC_007954.1 3457374 3458312 R Dyp-type peroxidase complement(3457374..3458312) Shewanella denitrificans OS217 4019419 YP_563897.1 CDS Sden_2896 NC_007954.1 3458914 3459675 R oxidoreductase FAD/NAD(P)-binding complement(3458914..3459675) Shewanella denitrificans OS217 4019421 YP_563898.1 CDS Sden_2897 NC_007954.1 3459835 3460461 R hypothetical protein complement(3459835..3460461) Shewanella denitrificans OS217 4019422 YP_563899.1 CDS Sden_2898 NC_007954.1 3460804 3461019 D hypothetical protein 3460804..3461019 Shewanella denitrificans OS217 4019423 YP_563900.1 CDS Sden_2899 NC_007954.1 3461181 3462986 R ABC transporter related complement(3461181..3462986) Shewanella denitrificans OS217 4019424 YP_563901.1 CDS Sden_2900 NC_007954.1 3463315 3463491 D hypothetical protein 3463315..3463491 Shewanella denitrificans OS217 4019425 YP_563902.1 CDS Sden_2901 NC_007954.1 3463578 3464633 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3463578..3464633) Shewanella denitrificans OS217 4019426 YP_563903.1 CDS Sden_2902 NC_007954.1 3464912 3466042 R tetratricopeptide TPR_2 complement(3464912..3466042) Shewanella denitrificans OS217 4019427 YP_563904.1 CDS Sden_2903 NC_007954.1 3466317 3466718 R hypothetical protein complement(3466317..3466718) Shewanella denitrificans OS217 4019428 YP_563905.1 CDS Sden_2904 NC_007954.1 3466811 3468061 R Rh-like protein/ammonium transporter complement(3466811..3468061) Shewanella denitrificans OS217 4019429 YP_563906.1 CDS Sden_2905 NC_007954.1 3468071 3468409 R nitrogen regulatory protein P-II complement(3468071..3468409) Shewanella denitrificans OS217 4019430 YP_563907.1 CDS Sden_2906 NC_007954.1 3468765 3471386 R endonuclease/exonuclease/phosphatase complement(3468765..3471386) Shewanella denitrificans OS217 4019431 YP_563908.1 CDS Sden_2907 NC_007954.1 3471933 3472304 R hypothetical protein complement(3471933..3472304) Shewanella denitrificans OS217 4019432 YP_563909.1 CDS Sden_2908 NC_007954.1 3472511 3473476 D Mg2+ transporter protein, CorA-like protein 3472511..3473476 Shewanella denitrificans OS217 4019433 YP_563910.1 CDS Sden_2909 NC_007954.1 3473594 3474364 R peptidylprolyl isomerase, FKBP-type complement(3473594..3474364) Shewanella denitrificans OS217 4019434 YP_563911.1 CDS Sden_2910 NC_007954.1 3474552 3475508 D WD-40 repeat-containing protein 3474552..3475508 Shewanella denitrificans OS217 4019435 YP_563912.1 CDS Sden_2911 NC_007954.1 3475533 3475745 D SlyX 3475533..3475745 Shewanella denitrificans OS217 4019436 YP_563913.1 CDS Sden_2912 NC_007954.1 3475876 3476382 D peptide deformylase 3475876..3476382 Shewanella denitrificans OS217 4019437 YP_563914.1 CDS Sden_2913 NC_007954.1 3476379 3477740 D tetratricopeptide TPR_2 3476379..3477740 Shewanella denitrificans OS217 4019438 YP_563915.1 CDS Sden_2914 NC_007954.1 3477807 3478412 D hypothetical protein 3477807..3478412 Shewanella denitrificans OS217 4019439 YP_563916.1 CDS Sden_2915 NC_007954.1 3478492 3481128 D peptidase M1, membrane alanine aminopeptidase 3478492..3481128 Shewanella denitrificans OS217 4019440 YP_563917.1 CDS Sden_2916 NC_007954.1 3481298 3481753 R hypothetical protein complement(3481298..3481753) Shewanella denitrificans OS217 4019441 YP_563918.1 CDS Sden_2917 NC_007954.1 3482201 3483061 R hypothetical protein complement(3482201..3483061) Shewanella denitrificans OS217 4019442 YP_563919.1 CDS Sden_2918 NC_007954.1 3484456 3485826 R hypothetical protein complement(3484456..3485826) Shewanella denitrificans OS217 4019443 YP_563920.1 CDS Sden_2919 NC_007954.1 3486348 3488162 D transcriptional regulatory protein-like protein 3486348..3488162 Shewanella denitrificans OS217 4019444 YP_563921.1 CDS Sden_2920 NC_007954.1 3488244 3489899 R hypothetical protein complement(3488244..3489899) Shewanella denitrificans OS217 4019445 YP_563922.1 CDS Sden_2921 NC_007954.1 3490090 3490476 R hypothetical protein complement(3490090..3490476) Shewanella denitrificans OS217 4019446 YP_563923.1 CDS Sden_2922 NC_007954.1 3490554 3491036 R dihydrofolate reductase complement(3490554..3491036) Shewanella denitrificans OS217 4019447 YP_563924.1 CDS Sden_2923 NC_007954.1 3491060 3491527 R hypothetical protein complement(3491060..3491527) Shewanella denitrificans OS217 4019448 YP_563925.1 CDS Sden_2924 NC_007954.1 3491527 3492288 R hypothetical protein complement(3491527..3492288) Shewanella denitrificans OS217 4019449 YP_563926.1 CDS obgE NC_007954.1 3492313 3493479 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3492313..3493479) Shewanella denitrificans OS217 4019450 YP_563927.1 CDS rpmA NC_007954.1 3493721 3493975 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3493721..3493975) Shewanella denitrificans OS217 4019451 YP_563928.1 CDS rplU NC_007954.1 3493992 3494303 R 50S ribosomal protein L21 complement(3493992..3494303) Shewanella denitrificans OS217 4019452 YP_563929.1 CDS Sden_2928 NC_007954.1 3494663 3495634 D trans-hexaprenyltranstransferase 3494663..3495634 Shewanella denitrificans OS217 4019453 YP_563930.1 CDS Sden_2929 NC_007954.1 3495757 3496416 R uracil-DNA glycosylase complement(3495757..3496416) Shewanella denitrificans OS217 4019454 YP_563931.1 CDS Sden_2930 NC_007954.1 3496489 3497106 R lysine exporter protein LysE/YggA complement(3496489..3497106) Shewanella denitrificans OS217 4019455 YP_563932.1 CDS Sden_2931 NC_007954.1 3497247 3499859 R TonB-dependent receptor complement(3497247..3499859) Shewanella denitrificans OS217 4019456 YP_563933.1 CDS Sden_2932 NC_007954.1 3500240 3501727 D sigma-54 factor, interaction region 3500240..3501727 Shewanella denitrificans OS217 4019457 YP_563934.1 CDS Sden_2933 NC_007954.1 3501927 3503411 D 4Fe-4S ferredoxin, iron-sulfur binding 3501927..3503411 Shewanella denitrificans OS217 4019458 YP_563935.1 CDS Sden_2934 NC_007954.1 3503649 3505256 D AMP-dependent synthetase and ligase 3503649..3505256 Shewanella denitrificans OS217 4019459 YP_563936.1 CDS Sden_2935 NC_007954.1 3506344 3506826 R isoprenylcysteine carboxyl methyltransferase complement(3506344..3506826) Shewanella denitrificans OS217 4019460 YP_563937.1 CDS Sden_2936 NC_007954.1 3506867 3508648 R ABC transporter, ATP-binding/permease protein complement(3506867..3508648) Shewanella denitrificans OS217 4019461 YP_563938.1 CDS Sden_2937 NC_007954.1 3508810 3509961 D rRNA (guanine-N(2)-)-methyltransferase 3508810..3509961 Shewanella denitrificans OS217 4019462 YP_563939.1 CDS Sden_2938 NC_007954.1 3510244 3511137 D universal stress protein 3510244..3511137 Shewanella denitrificans OS217 4019463 YP_563940.1 CDS Sden_2939 NC_007954.1 3511339 3514119 D ATPase, E1-E2 type 3511339..3514119 Shewanella denitrificans OS217 4019464 YP_563941.1 CDS Sden_2940 NC_007954.1 3514335 3516467 D prolyl oligopeptidase 3514335..3516467 Shewanella denitrificans OS217 4019465 YP_563942.1 CDS Sden_2941 NC_007954.1 3516551 3516943 R hypothetical protein complement(3516551..3516943) Shewanella denitrificans OS217 4019466 YP_563943.1 CDS Sden_2942 NC_007954.1 3517350 3518051 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3517350..3518051 Shewanella denitrificans OS217 4019467 YP_563944.1 CDS Sden_2943 NC_007954.1 3518110 3519150 D aminoglycoside phosphotransferase 3518110..3519150 Shewanella denitrificans OS217 4019468 YP_563945.1 CDS Sden_2944 NC_007954.1 3520217 3520891 D hypothetical protein 3520217..3520891 Shewanella denitrificans OS217 4019469 YP_563946.1 CDS Sden_2945 NC_007954.1 3521212 3521589 R hypothetical protein complement(3521212..3521589) Shewanella denitrificans OS217 4019470 YP_563947.1 CDS Sden_2946 NC_007954.1 3521824 3522252 R rod shape-determining-related protein complement(3521824..3522252) Shewanella denitrificans OS217 4019471 YP_563948.1 CDS Sden_2947 NC_007954.1 3522364 3523206 R hypothetical protein complement(3522364..3523206) Shewanella denitrificans OS217 4019472 YP_563949.1 CDS Sden_2948 NC_007954.1 3525711 3526028 R hypothetical protein complement(3525711..3526028) Shewanella denitrificans OS217 4019473 YP_563950.1 CDS Sden_2949 NC_007954.1 3526639 3528051 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(3526639..3528051) Shewanella denitrificans OS217 4019474 YP_563951.1 CDS Sden_2950 NC_007954.1 3528184 3529050 R Pirin-like protein complement(3528184..3529050) Shewanella denitrificans OS217 4019475 YP_563952.1 CDS Sden_2951 NC_007954.1 3529303 3531372 R hypothetical protein complement(3529303..3531372) Shewanella denitrificans OS217 4019476 YP_563953.1 CDS Sden_2952 NC_007954.1 3531527 3532786 R DEAD/DEAH box helicase-like protein complement(3531527..3532786) Shewanella denitrificans OS217 4019477 YP_563954.1 CDS Sden_2953 NC_007954.1 3532853 3533317 R hypothetical protein complement(3532853..3533317) Shewanella denitrificans OS217 4019478 YP_563955.1 CDS Sden_2954 NC_007954.1 3534254 3534988 D hypothetical protein 3534254..3534988 Shewanella denitrificans OS217 4019479 YP_563956.1 CDS Sden_2955 NC_007954.1 3535132 3536625 D chemotaxis sensory transducer 3535132..3536625 Shewanella denitrificans OS217 4019480 YP_563957.1 CDS Sden_2956 NC_007954.1 3536804 3537760 D glycine cleavage T protein (aminomethyl transferase) 3536804..3537760 Shewanella denitrificans OS217 4019481 YP_563958.1 CDS Sden_2957 NC_007954.1 3538187 3538852 R hypothetical protein complement(3538187..3538852) Shewanella denitrificans OS217 4019482 YP_563959.1 CDS Sden_2958 NC_007954.1 3539567 3541660 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3539567..3541660) Shewanella denitrificans OS217 4019483 YP_563960.1 CDS Sden_2959 NC_007954.1 3541966 3542844 R GGDEF domain-containing protein complement(3541966..3542844) Shewanella denitrificans OS217 4019484 YP_563961.1 CDS Sden_2960 NC_007954.1 3542841 3544043 R transposase, IS4 complement(3542841..3544043) Shewanella denitrificans OS217 4019485 YP_563962.1 CDS Sden_2961 NC_007954.1 3544142 3544756 R GGDEF domain-containing protein complement(3544142..3544756) Shewanella denitrificans OS217 4019486 YP_563963.1 CDS Sden_2962 NC_007954.1 3545051 3549604 R carbamoyl-phosphate synthase L chain, ATP-binding complement(3545051..3549604) Shewanella denitrificans OS217 4019487 YP_563964.1 CDS Sden_2963 NC_007954.1 3549729 3550640 D LysR, substrate-binding 3549729..3550640 Shewanella denitrificans OS217 4019488 YP_563965.1 CDS Sden_2964 NC_007954.1 3550705 3551436 R hypothetical protein complement(3550705..3551436) Shewanella denitrificans OS217 4019489 YP_563966.1 CDS Sden_2965 NC_007954.1 3551648 3552055 R hypothetical protein complement(3551648..3552055) Shewanella denitrificans OS217 4019490 YP_563967.1 CDS Sden_2966 NC_007954.1 3552075 3552788 R hypothetical protein complement(3552075..3552788) Shewanella denitrificans OS217 4019491 YP_563968.1 CDS Sden_2967 NC_007954.1 3552798 3553481 R peptidase C39, bacteriocin processing complement(3552798..3553481) Shewanella denitrificans OS217 4019492 YP_563969.1 CDS Sden_2968 NC_007954.1 3553535 3554602 R hypothetical protein complement(3553535..3554602) Shewanella denitrificans OS217 4019493 YP_563970.1 CDS Sden_2969 NC_007954.1 3554629 3555273 R hypothetical protein complement(3554629..3555273) Shewanella denitrificans OS217 4019494 YP_563971.1 CDS Sden_2970 NC_007954.1 3555499 3556836 R sigma-54 factor, interaction region complement(3555499..3556836) Shewanella denitrificans OS217 4019495 YP_563972.1 CDS Sden_2971 NC_007954.1 3557253 3558452 D hypothetical protein 3557253..3558452 Shewanella denitrificans OS217 4019496 YP_563973.1 CDS Sden_2972 NC_007954.1 3558483 3559142 D hypothetical protein 3558483..3559142 Shewanella denitrificans OS217 4019497 YP_563974.1 CDS Sden_2973 NC_007954.1 3559158 3559967 D deoxyribonuclease I 3559158..3559967 Shewanella denitrificans OS217 4019498 YP_563975.1 CDS Sden_2974 NC_007954.1 3559981 3560715 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3559981..3560715 Shewanella denitrificans OS217 4019499 YP_563976.1 CDS Sden_2975 NC_007954.1 3560751 3561710 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3560751..3561710 Shewanella denitrificans OS217 4019500 YP_563977.1 CDS Sden_2976 NC_007954.1 3561713 3563098 D alkaline phosphatase 3561713..3563098 Shewanella denitrificans OS217 4019501 YP_563978.1 CDS Sden_2977 NC_007954.1 3563215 3564252 D rRNA (guanine-N(2)-)-methyltransferase 3563215..3564252 Shewanella denitrificans OS217 4019502 YP_563979.1 CDS Sden_2978 NC_007954.1 3564540 3566207 D hypothetical protein 3564540..3566207 Shewanella denitrificans OS217 4019503 YP_563980.1 CDS Sden_2979 NC_007954.1 3566305 3566700 D hypothetical protein 3566305..3566700 Shewanella denitrificans OS217 4019504 YP_563981.1 CDS Sden_2980 NC_007954.1 3566790 3567971 D peptidase M50 3566790..3567971 Shewanella denitrificans OS217 4019505 YP_563982.1 CDS Sden_2981 NC_007954.1 3568145 3569032 D transposase, IS4 3568145..3569032 Shewanella denitrificans OS217 4019506 YP_563983.1 CDS Sden_2982 NC_007954.1 3569045 3570394 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(3569045..3570394) Shewanella denitrificans OS217 4019507 YP_563984.1 CDS Sden_2983 NC_007954.1 3570824 3571261 R hypothetical protein complement(3570824..3571261) Shewanella denitrificans OS217 4019508 YP_563985.1 CDS Sden_2984 NC_007954.1 3571927 3572643 D two-component response regulator 3571927..3572643 Shewanella denitrificans OS217 4019509 YP_563986.1 CDS Sden_2985 NC_007954.1 3572762 3575089 R peptidase S9B, dipeptidylpeptidase IV-like protein complement(3572762..3575089) Shewanella denitrificans OS217 4019510 YP_563987.1 CDS Sden_2986 NC_007954.1 3575611 3576603 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3575611..3576603 Shewanella denitrificans OS217 4019511 YP_563988.1 CDS Sden_2987 NC_007954.1 3576694 3577947 R sodium:dicarboxylate symporter complement(3576694..3577947) Shewanella denitrificans OS217 4019512 YP_563989.1 CDS Sden_2988 NC_007954.1 3578130 3579038 R hypothetical protein complement(3578130..3579038) Shewanella denitrificans OS217 4019513 YP_563990.1 CDS Sden_2989 NC_007954.1 3579026 3580246 R hypothetical protein complement(3579026..3580246) Shewanella denitrificans OS217 4019514 YP_563991.1 CDS Sden_2990 NC_007954.1 3580243 3580890 R hypothetical protein complement(3580243..3580890) Shewanella denitrificans OS217 4019515 YP_563992.1 CDS Sden_2991 NC_007954.1 3580890 3584579 R hypothetical protein complement(3580890..3584579) Shewanella denitrificans OS217 4019516 YP_563993.1 CDS Sden_2992 NC_007954.1 3585019 3585597 R hypothetical protein complement(3585019..3585597) Shewanella denitrificans OS217 4019517 YP_563994.1 CDS Sden_2993 NC_007954.1 3585779 3586231 R hypothetical protein complement(3585779..3586231) Shewanella denitrificans OS217 4019518 YP_563995.1 CDS Sden_2994 NC_007954.1 3586625 3587653 R hypothetical protein complement(3586625..3587653) Shewanella denitrificans OS217 4019519 YP_563996.1 CDS Sden_2995 NC_007954.1 3587802 3590555 R hypothetical protein complement(3587802..3590555) Shewanella denitrificans OS217 4019520 YP_563997.1 CDS Sden_2996 NC_007954.1 3590552 3591988 R AAA ATPase, central region complement(3590552..3591988) Shewanella denitrificans OS217 4019521 YP_563998.1 CDS Sden_2997 NC_007954.1 3592090 3597723 R hypothetical protein complement(3592090..3597723) Shewanella denitrificans OS217 4019522 YP_563999.1 CDS Sden_2998 NC_007954.1 3597713 3600433 R hypothetical protein complement(3597713..3600433) Shewanella denitrificans OS217 4019523 YP_564000.1 CDS Sden_2999 NC_007954.1 3600423 3601340 R hypothetical protein complement(3600423..3601340) Shewanella denitrificans OS217 4019524 YP_564001.1 CDS Sden_3000 NC_007954.1 3601333 3605574 R hypothetical protein complement(3601333..3605574) Shewanella denitrificans OS217 4019525 YP_564002.1 CDS Sden_3001 NC_007954.1 3605564 3606001 R GPW/gp25 complement(3605564..3606001) Shewanella denitrificans OS217 4019526 YP_564003.1 CDS Sden_3002 NC_007954.1 3606135 3606434 R PAAR complement(3606135..3606434) Shewanella denitrificans OS217 4019527 YP_564004.1 CDS Sden_3003 NC_007954.1 3606445 3608241 R Rhs element Vgr protein complement(3606445..3608241) Shewanella denitrificans OS217 4019528 YP_564005.1 CDS Sden_3004 NC_007954.1 3608270 3608911 R hypothetical protein complement(3608270..3608911) Shewanella denitrificans OS217 4019529 YP_564006.1 CDS Sden_3005 NC_007954.1 3609094 3609567 R hypothetical protein complement(3609094..3609567) Shewanella denitrificans OS217 4019530 YP_564007.1 CDS Sden_3006 NC_007954.1 3609678 3610151 R hypothetical protein complement(3609678..3610151) Shewanella denitrificans OS217 4019531 YP_564008.1 CDS Sden_3007 NC_007954.1 3610204 3611757 R hypothetical protein complement(3610204..3611757) Shewanella denitrificans OS217 4019532 YP_564009.1 CDS Sden_3008 NC_007954.1 3611775 3612668 R hypothetical protein complement(3611775..3612668) Shewanella denitrificans OS217 4019533 YP_564010.1 CDS Sden_3009 NC_007954.1 3612671 3613243 R hypothetical protein complement(3612671..3613243) Shewanella denitrificans OS217 4019534 YP_564011.1 CDS Sden_3010 NC_007954.1 3613992 3615611 R chemotaxis sensory transducer complement(3613992..3615611) Shewanella denitrificans OS217 4019535 YP_564012.1 CDS Sden_3011 NC_007954.1 3615965 3617560 R FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(3615965..3617560) Shewanella denitrificans OS217 4019536 YP_564013.1 CDS Sden_3012 NC_007954.1 3617843 3618412 R alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(3617843..3618412) Shewanella denitrificans OS217 4019537 YP_564014.1 CDS Sden_3013 NC_007954.1 3618581 3619450 R transcription activator, effector binding complement(3618581..3619450) Shewanella denitrificans OS217 4019538 YP_564015.1 CDS Sden_3014 NC_007954.1 3619756 3620448 D hypothetical protein 3619756..3620448 Shewanella denitrificans OS217 4019539 YP_564016.1 CDS Sden_3015 NC_007954.1 3620792 3623125 D peptidase M4, thermolysin 3620792..3623125 Shewanella denitrificans OS217 4019540 YP_564017.1 CDS Sden_3016 NC_007954.1 3623279 3624349 R ACP S-malonyltransferase complement(3623279..3624349) Shewanella denitrificans OS217 4019541 YP_564018.1 CDS Sden_3017 NC_007954.1 3624346 3626631 R transketolase complement(3624346..3626631) Shewanella denitrificans OS217 4019542 YP_564019.1 CDS Sden_3018 NC_007954.1 3626858 3628033 R acyl-CoA dehydrogenase-like protein complement(3626858..3628033) Shewanella denitrificans OS217 4019543 YP_564020.1 CDS Sden_3019 NC_007954.1 3628332 3629174 D regulatory protein, LysR 3628332..3629174 Shewanella denitrificans OS217 4019544 YP_564021.1 CDS Sden_3020 NC_007954.1 3629372 3629662 D transposase IS3/IS911 3629372..3629662 Shewanella denitrificans OS217 4019545 YP_564022.1 CDS Sden_3021 NC_007954.1 3629722 3630531 D integrase catalytic subunit 3629722..3630531 Shewanella denitrificans OS217 4019546 YP_564023.1 CDS Sden_3022 NC_007954.1 3630890 3631288 R glutathione-dependent formaldehyde-activating, GFA complement(3630890..3631288) Shewanella denitrificans OS217 4019547 YP_564024.1 CDS Sden_3023 NC_007954.1 3631466 3631807 R cupin 2, barrel complement(3631466..3631807) Shewanella denitrificans OS217 4019548 YP_564025.1 CDS Sden_3024 NC_007954.1 3631817 3632335 R GCN5-related N-acetyltransferase complement(3631817..3632335) Shewanella denitrificans OS217 4019549 YP_564026.1 CDS Sden_3025 NC_007954.1 3632411 3633490 R hypothetical protein complement(3632411..3633490) Shewanella denitrificans OS217 4019550 YP_564027.1 CDS Sden_3026 NC_007954.1 3633814 3635304 D DEAD/DEAH box helicase-like protein 3633814..3635304 Shewanella denitrificans OS217 4019551 YP_564028.1 CDS Sden_3027 NC_007954.1 3636127 3636525 R hypothetical protein complement(3636127..3636525) Shewanella denitrificans OS217 4019552 YP_564029.1 CDS Sden_3028 NC_007954.1 3637273 3638082 R binding-protein-dependent transport systems inner membrane component complement(3637273..3638082) Shewanella denitrificans OS217 4019553 YP_564030.1 CDS Sden_3029 NC_007954.1 3638079 3638936 R binding-protein-dependent transport systems inner membrane component complement(3638079..3638936) Shewanella denitrificans OS217 4019554 YP_564031.1 CDS Sden_3030 NC_007954.1 3638981 3640153 R spermidine/putrescine ABC transporter ATP-binding subunit complement(3638981..3640153) Shewanella denitrificans OS217 4019555 YP_564032.1 CDS Sden_3031 NC_007954.1 3640285 3641385 R extracellular solute-binding protein complement(3640285..3641385) Shewanella denitrificans OS217 4019556 YP_564033.1 CDS Sden_3032 NC_007954.1 3641703 3643058 R glutamate--ammonia ligase complement(3641703..3643058) Shewanella denitrificans OS217 4019557 YP_564034.1 CDS Sden_3033 NC_007954.1 3643061 3643825 R peptidase C26 complement(3643061..3643825) Shewanella denitrificans OS217 4019558 YP_564035.1 CDS Sden_3034 NC_007954.1 3644010 3645509 R aldehyde dehydrogenase complement(3644010..3645509) Shewanella denitrificans OS217 4019559 YP_564036.1 CDS Sden_3035 NC_007954.1 3646034 3646378 D hypothetical protein 3646034..3646378 Shewanella denitrificans OS217 4019560 YP_564037.1 CDS Sden_3036 NC_007954.1 3646428 3647651 R amidohydrolase complement(3646428..3647651) Shewanella denitrificans OS217 4019561 YP_564038.1 CDS Sden_3037 NC_007954.1 3647983 3648945 D GGDEF domain-containing protein 3647983..3648945 Shewanella denitrificans OS217 4019562 YP_564039.1 CDS Sden_3038 NC_007954.1 3649459 3649743 D heat shock protein DnaJ-like protein 3649459..3649743 Shewanella denitrificans OS217 4019564 YP_564040.1 CDS Sden_3039 NC_007954.1 3649751 3650287 D hypothetical protein 3649751..3650287 Shewanella denitrificans OS217 4019565 YP_564041.1 CDS Sden_3040 NC_007954.1 3650287 3651045 D hypothetical protein 3650287..3651045 Shewanella denitrificans OS217 4019566 YP_564042.1 CDS Sden_3041 NC_007954.1 3651056 3651946 D hypothetical protein 3651056..3651946 Shewanella denitrificans OS217 4019567 YP_564043.1 CDS Sden_3042 NC_007954.1 3652186 3652929 R spermidine synthase complement(3652186..3652929) Shewanella denitrificans OS217 4019568 YP_564044.1 CDS Sden_3043 NC_007954.1 3653069 3653605 D hypothetical protein 3653069..3653605 Shewanella denitrificans OS217 4019569 YP_564045.1 CDS Sden_3044 NC_007954.1 3653719 3654186 R hypothetical protein complement(3653719..3654186) Shewanella denitrificans OS217 4019570 YP_564046.1 CDS Sden_3045 NC_007954.1 3654208 3656319 R peptidase S8/S53 subtilisin kexin sedolisin complement(3654208..3656319) Shewanella denitrificans OS217 4019571 YP_564047.1 CDS Sden_3046 NC_007954.1 3656813 3657550 R dienelactone hydrolase complement(3656813..3657550) Shewanella denitrificans OS217 4019572 YP_564048.1 CDS Sden_3047 NC_007954.1 3657645 3658637 R D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding complement(3657645..3658637) Shewanella denitrificans OS217 4019573 YP_564049.1 CDS Sden_3048 NC_007954.1 3659143 3659820 D pseudouridylate synthase 3659143..3659820 Shewanella denitrificans OS217 4019574 YP_564050.1 CDS Sden_3049 NC_007954.1 3660056 3660517 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3660056..3660517 Shewanella denitrificans OS217 4019575 YP_564051.1 CDS Sden_3050 NC_007954.1 3661140 3664802 D protease-associated PA 3661140..3664802 Shewanella denitrificans OS217 4019576 YP_564052.1 CDS Sden_3051 NC_007954.1 3664905 3665597 R hypothetical protein complement(3664905..3665597) Shewanella denitrificans OS217 4019577 YP_564053.1 CDS Sden_3052 NC_007954.1 3665747 3667294 R carotenoid oxygenase complement(3665747..3667294) Shewanella denitrificans OS217 4019578 YP_564054.1 CDS Sden_3053 NC_007954.1 3667319 3667774 R hypothetical protein complement(3667319..3667774) Shewanella denitrificans OS217 4019579 YP_564055.1 CDS Sden_3054 NC_007954.1 3667955 3669103 D histidine kinase, dimerisation and phosphoacceptor region 3667955..3669103 Shewanella denitrificans OS217 4019580 YP_564056.1 CDS Sden_3055 NC_007954.1 3669176 3669835 D response regulator receiver 3669176..3669835 Shewanella denitrificans OS217 4019581 YP_564057.1 CDS Sden_3056 NC_007954.1 3669828 3670643 R hydratase/decarboxylase family protein complement(3669828..3670643) Shewanella denitrificans OS217 4019582 YP_564058.1 CDS Sden_3057 NC_007954.1 3670681 3671259 R hypothetical protein complement(3670681..3671259) Shewanella denitrificans OS217 4019583 YP_564059.1 CDS fre NC_007954.1 3671343 3672041 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(3671343..3672041) Shewanella denitrificans OS217 4019584 YP_564060.1 CDS Sden_3059 NC_007954.1 3672117 3673598 R carboxylyase-like protein complement(3672117..3673598) Shewanella denitrificans OS217 4019585 YP_564061.1 CDS Sden_3060 NC_007954.1 3673737 3674525 D hypothetical protein 3673737..3674525 Shewanella denitrificans OS217 4019586 YP_564062.1 CDS Sden_3061 NC_007954.1 3674528 3675937 R GGDEF domain-containing protein complement(3674528..3675937) Shewanella denitrificans OS217 4019587 YP_564063.1 CDS Sden_3062 NC_007954.1 3675942 3676934 R hypothetical protein complement(3675942..3676934) Shewanella denitrificans OS217 4019588 YP_564064.1 CDS Sden_3063 NC_007954.1 3677554 3678657 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3677554..3678657 Shewanella denitrificans OS217 4019589 YP_564065.1 CDS Sden_3064 NC_007954.1 3678896 3681034 D TonB-dependent siderophore receptor 3678896..3681034 Shewanella denitrificans OS217 4019590 YP_564066.1 CDS Sden_3065 NC_007954.1 3681133 3682233 D PepSY-associated TM helix 3681133..3682233 Shewanella denitrificans OS217 4019591 YP_564067.1 CDS Sden_3066 NC_007954.1 3682626 3684092 D chemotaxis sensory transducer 3682626..3684092 Shewanella denitrificans OS217 4019592 YP_564068.1 CDS Sden_3067 NC_007954.1 3684281 3685624 R peptidase U62, modulator of DNA gyrase complement(3684281..3685624) Shewanella denitrificans OS217 4019593 YP_564069.1 CDS Sden_3068 NC_007954.1 3685829 3686362 D hypothetical protein 3685829..3686362 Shewanella denitrificans OS217 4019594 YP_564070.1 CDS Sden_3069 NC_007954.1 3686388 3688880 D hypothetical protein 3686388..3688880 Shewanella denitrificans OS217 4019595 YP_564071.1 CDS Sden_3070 NC_007954.1 3688977 3689924 R band 7 protein complement(3688977..3689924) Shewanella denitrificans OS217 4019596 YP_564072.1 CDS Sden_3071 NC_007954.1 3689927 3690871 R band 7 protein complement(3689927..3690871) Shewanella denitrificans OS217 4019597 YP_564073.1 CDS Sden_3072 NC_007954.1 3690884 3691363 R hypothetical protein complement(3690884..3691363) Shewanella denitrificans OS217 4019598 YP_564074.1 CDS Sden_3073 NC_007954.1 3691625 3692380 D hypothetical protein 3691625..3692380 Shewanella denitrificans OS217 4019599 YP_564075.1 CDS Sden_3074 NC_007954.1 3692470 3693228 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(3692470..3693228) Shewanella denitrificans OS217 4019600 YP_564076.1 CDS Sden_3075 NC_007954.1 3693619 3694794 R diaminopimelate decarboxylase complement(3693619..3694794) Shewanella denitrificans OS217 4019601 YP_564077.1 CDS Sden_3076 NC_007954.1 3695020 3695898 R radical SAM family protein complement(3695020..3695898) Shewanella denitrificans OS217 4019602 YP_564078.1 CDS Sden_3077 NC_007954.1 3695895 3696359 R GCN5-related N-acetyltransferase complement(3695895..3696359) Shewanella denitrificans OS217 4019603 YP_564079.1 CDS Sden_3078 NC_007954.1 3696440 3697051 R regulatory protein, TetR complement(3696440..3697051) Shewanella denitrificans OS217 4019604 YP_564080.1 CDS Sden_3079 NC_007954.1 3697276 3698532 D secretion protein HlyD 3697276..3698532 Shewanella denitrificans OS217 4019605 YP_564081.1 CDS Sden_3080 NC_007954.1 3698545 3701781 D hydrophobe/amphiphile efflux-1 HAE1 3698545..3701781 Shewanella denitrificans OS217 4019606 YP_564082.1 CDS Sden_3081 NC_007954.1 3701774 3703264 D RND efflux system, outer membrane lipoprotein, NodT 3701774..3703264 Shewanella denitrificans OS217 4019607 YP_564083.1 CDS Sden_3082 NC_007954.1 3703659 3704510 R hypothetical protein complement(3703659..3704510) Shewanella denitrificans OS217 4019608 YP_564084.1 CDS Sden_3083 NC_007954.1 3704625 3705332 R hypothetical protein complement(3704625..3705332) Shewanella denitrificans OS217 4019609 YP_564085.1 CDS Sden_3084 NC_007954.1 3706018 3706995 R hypothetical protein complement(3706018..3706995) Shewanella denitrificans OS217 4019610 YP_564086.1 CDS Sden_3085 NC_007954.1 3707595 3708065 R hypothetical protein complement(3707595..3708065) Shewanella denitrificans OS217 4019611 YP_564087.1 CDS Sden_3086 NC_007954.1 3708227 3708724 R GCN5-related N-acetyltransferase complement(3708227..3708724) Shewanella denitrificans OS217 4019612 YP_564088.1 CDS Sden_3087 NC_007954.1 3709051 3710028 R hypothetical protein complement(3709051..3710028) Shewanella denitrificans OS217 4019613 YP_564089.1 CDS Sden_3088 NC_007954.1 3710110 3711345 R acetyl-CoA hydrolase complement(3710110..3711345) Shewanella denitrificans OS217 4019614 YP_564090.1 CDS Sden_3090 NC_007954.1 3711786 3713204 R hypothetical protein complement(3711786..3713204) Shewanella denitrificans OS217 4019616 YP_564091.1 CDS Sden_3091 NC_007954.1 3713419 3713676 R hypothetical protein complement(3713419..3713676) Shewanella denitrificans OS217 4019617 YP_564092.1 CDS Sden_3092 NC_007954.1 3713796 3714272 R phenylacetic acid degradation-related protein complement(3713796..3714272) Shewanella denitrificans OS217 4019618 YP_564093.1 CDS Sden_3093 NC_007954.1 3714385 3716892 R peptidase S8/S53 subtilisin kexin sedolisin complement(3714385..3716892) Shewanella denitrificans OS217 4019619 YP_564094.1 CDS Sden_3094 NC_007954.1 3717304 3717732 D curlin associated 3717304..3717732 Shewanella denitrificans OS217 4019620 YP_564095.1 CDS Sden_3095 NC_007954.1 3717756 3719252 D curlin associated 3717756..3719252 Shewanella denitrificans OS217 4019621 YP_564096.1 CDS Sden_3096 NC_007954.1 3719358 3720026 R regulatory protein, LuxR complement(3719358..3720026) Shewanella denitrificans OS217 4019622 YP_564097.1 CDS Sden_3097 NC_007954.1 3720563 3721792 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3720563..3721792 Shewanella denitrificans OS217 4019623 YP_564098.1 CDS Sden_3098 NC_007954.1 3721894 3724926 R hypothetical protein complement(3721894..3724926) Shewanella denitrificans OS217 4019624 YP_564099.1 CDS Sden_3099 NC_007954.1 3725227 3726540 D hypothetical protein 3725227..3726540 Shewanella denitrificans OS217 4019625 YP_564100.1 CDS Sden_3100 NC_007954.1 3726560 3728518 D chemotaxis sensory transducer 3726560..3728518 Shewanella denitrificans OS217 4019626 YP_564101.1 CDS Sden_3101 NC_007954.1 3728633 3729769 R patatin complement(3728633..3729769) Shewanella denitrificans OS217 4019627 YP_564102.1 CDS Sden_3102 NC_007954.1 3729915 3731657 R GGDEF domain-containing protein complement(3729915..3731657) Shewanella denitrificans OS217 4019628 YP_564103.1 CDS Sden_3103 NC_007954.1 3732027 3734459 D peptidase S16, lon-like protein 3732027..3734459 Shewanella denitrificans OS217 4019629 YP_564104.1 CDS Sden_3104 NC_007954.1 3734575 3735765 R methyltransferase type 12 complement(3734575..3735765) Shewanella denitrificans OS217 4019630 YP_564105.1 CDS Sden_3105 NC_007954.1 3735838 3737013 R methyltransferase type 12 complement(3735838..3737013) Shewanella denitrificans OS217 4019631 YP_564106.1 CDS Sden_3106 NC_007954.1 3737022 3737750 R short-chain dehydrogenase/reductase SDR complement(3737022..3737750) Shewanella denitrificans OS217 4019632 YP_564107.1 CDS Sden_3107 NC_007954.1 3737750 3738889 R Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein complement(3737750..3738889) Shewanella denitrificans OS217 4019633 YP_564108.1 CDS Sden_3108 NC_007954.1 3738889 3739134 R hypothetical protein complement(3738889..3739134) Shewanella denitrificans OS217 4019634 YP_564109.1 CDS Sden_3109 NC_007954.1 3739127 3739696 R acetyltransferase complement(3739127..3739696) Shewanella denitrificans OS217 4019635 YP_564110.1 CDS Sden_3110 NC_007954.1 3739707 3740480 R short-chain dehydrogenase/reductase SDR complement(3739707..3740480) Shewanella denitrificans OS217 4019636 YP_564111.1 CDS Sden_3111 NC_007954.1 3740480 3740713 R hypothetical protein complement(3740480..3740713) Shewanella denitrificans OS217 4019637 YP_564112.1 CDS Sden_3112 NC_007954.1 3740829 3741569 R acylneuraminate cytidylyltransferase complement(3740829..3741569) Shewanella denitrificans OS217 4019638 YP_564113.1 CDS Sden_3113 NC_007954.1 3741566 3742645 R N-acetylneuraminic acid synthase-like protein complement(3741566..3742645) Shewanella denitrificans OS217 4019639 YP_564114.1 CDS Sden_3114 NC_007954.1 3742648 3743751 R Rieske (2Fe-2S) region complement(3742648..3743751) Shewanella denitrificans OS217 4019640 YP_564115.1 CDS Sden_3115 NC_007954.1 3743748 3744449 R spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein complement(3743748..3744449) Shewanella denitrificans OS217 4019641 YP_564116.1 CDS Sden_3116 NC_007954.1 3744520 3745407 R transposase, IS4 complement(3744520..3745407) Shewanella denitrificans OS217 4019642 YP_564117.1 CDS Sden_3117 NC_007954.1 3745466 3745801 R hypothetical protein complement(3745466..3745801) Shewanella denitrificans OS217 4019643 YP_564118.1 CDS Sden_3118 NC_007954.1 3745791 3746543 R short-chain dehydrogenase/reductase SDR complement(3745791..3746543) Shewanella denitrificans OS217 4019644 YP_564119.1 CDS Sden_3119 NC_007954.1 3746552 3747640 R 3-oxoacyl-ACP synthase complement(3746552..3747640) Shewanella denitrificans OS217 4019645 YP_564120.1 CDS Sden_3120 NC_007954.1 3747776 3748825 D 3-oxoacyl-ACP synthase 3747776..3748825 Shewanella denitrificans OS217 4019646 YP_564121.1 CDS Sden_3121 NC_007954.1 3748918 3749499 R GCN5-related N-acetyltransferase complement(3748918..3749499) Shewanella denitrificans OS217 4019647 YP_564122.1 CDS Sden_3122 NC_007954.1 3749645 3751165 R hypothetical protein complement(3749645..3751165) Shewanella denitrificans OS217 4019648 YP_564123.1 CDS Sden_3123 NC_007954.1 3751491 3752630 D hypothetical protein 3751491..3752630 Shewanella denitrificans OS217 4019649 YP_564124.1 CDS Sden_3124 NC_007954.1 3752955 3755330 R TonB-dependent receptor complement(3752955..3755330) Shewanella denitrificans OS217 4019650 YP_564125.1 CDS Sden_3125 NC_007954.1 3755469 3755936 D hypothetical protein 3755469..3755936 Shewanella denitrificans OS217 4019651 YP_564126.1 CDS Sden_3126 NC_007954.1 3755937 3756497 D hypothetical protein 3755937..3756497 Shewanella denitrificans OS217 4019652 YP_564127.1 CDS lysS NC_007954.1 3756582 3758084 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3756582..3758084) Shewanella denitrificans OS217 4019653 YP_564128.1 CDS Sden_3128 NC_007954.1 3758144 3759202 R peptide chain release factor 2 complement(3758144..3759202) Shewanella denitrificans OS217 4019654 YP_564129.1 CDS Sden_3129 NC_007954.1 3759583 3761289 D amidohydrolase 3 3759583..3761289 Shewanella denitrificans OS217 4019655 YP_564130.1 CDS Sden_3130 NC_007954.1 3761839 3762096 R hypothetical protein complement(3761839..3762096) Shewanella denitrificans OS217 4019656 YP_564131.1 CDS Sden_3132 NC_007954.1 3762630 3763541 R hypothetical protein complement(3762630..3763541) Shewanella denitrificans OS217 4019658 YP_564132.1 CDS Sden_3133 NC_007954.1 3763554 3764294 R hypothetical protein complement(3763554..3764294) Shewanella denitrificans OS217 4019659 YP_564133.1 CDS Sden_3134 NC_007954.1 3764336 3765319 R hypothetical protein complement(3764336..3765319) Shewanella denitrificans OS217 4019660 YP_564134.1 CDS Sden_3135 NC_007954.1 3765599 3766225 R hypothetical protein complement(3765599..3766225) Shewanella denitrificans OS217 4019661 YP_564135.1 CDS Sden_3136 NC_007954.1 3766529 3767965 R AAA ATPase, central region complement(3766529..3767965) Shewanella denitrificans OS217 4019662 YP_564136.1 CDS Sden_3137 NC_007954.1 3768194 3769045 D peptidoglycan-binding LysM 3768194..3769045 Shewanella denitrificans OS217 4019663 YP_564137.1 CDS Sden_3138 NC_007954.1 3769118 3769573 R hypothetical protein complement(3769118..3769573) Shewanella denitrificans OS217 4019664 YP_564138.1 CDS Sden_3139 NC_007954.1 3769800 3770498 R hypothetical protein complement(3769800..3770498) Shewanella denitrificans OS217 4019665 YP_564139.1 CDS Sden_3140 NC_007954.1 3770710 3771564 R chitinase complement(3770710..3771564) Shewanella denitrificans OS217 4019666 YP_564140.1 CDS Sden_3141 NC_007954.1 3771675 3772301 R hypothetical protein complement(3771675..3772301) Shewanella denitrificans OS217 4019667 YP_564141.1 CDS Sden_3142 NC_007954.1 3772371 3772856 R hypothetical protein complement(3772371..3772856) Shewanella denitrificans OS217 4019668 YP_564142.1 CDS Sden_3143 NC_007954.1 3773537 3775096 R hypothetical protein complement(3773537..3775096) Shewanella denitrificans OS217 4019669 YP_564143.1 CDS Sden_3144 NC_007954.1 3775099 3775830 R hypothetical protein complement(3775099..3775830) Shewanella denitrificans OS217 4019670 YP_564144.1 CDS Sden_3145 NC_007954.1 3775858 3776862 R hypothetical protein complement(3775858..3776862) Shewanella denitrificans OS217 4019671 YP_564145.1 CDS Sden_3146 NC_007954.1 3776906 3777262 R hypothetical protein complement(3776906..3777262) Shewanella denitrificans OS217 4019672 YP_564146.1 CDS Sden_3147 NC_007954.1 3777341 3777826 R hypothetical protein complement(3777341..3777826) Shewanella denitrificans OS217 4019673 YP_564147.1 CDS Sden_3148 NC_007954.1 3778161 3778427 R RebB protein complement(3778161..3778427) Shewanella denitrificans OS217 4019674 YP_564148.1 CDS Sden_3149 NC_007954.1 3778530 3778796 R RebB protein complement(3778530..3778796) Shewanella denitrificans OS217 4019675 YP_564149.1 CDS Sden_3150 NC_007954.1 3778821 3779099 R RebB protein complement(3778821..3779099) Shewanella denitrificans OS217 4019676 YP_564150.1 CDS Sden_3151 NC_007954.1 3779154 3779450 R RebB protein complement(3779154..3779450) Shewanella denitrificans OS217 4019677 YP_564151.1 CDS Sden_3152 NC_007954.1 3779643 3780965 R sigma-54 factor, interaction region complement(3779643..3780965) Shewanella denitrificans OS217 4019678 YP_564152.1 CDS Sden_3153 NC_007954.1 3781109 3782368 R hypothetical protein complement(3781109..3782368) Shewanella denitrificans OS217 4019679 YP_564153.1 CDS Sden_3154 NC_007954.1 3782703 3783416 R Beta-lactamase complement(3782703..3783416) Shewanella denitrificans OS217 4019680 YP_564154.1 CDS Sden_3155 NC_007954.1 3783615 3784850 R SAM-dependent methyltransferase complement(3783615..3784850) Shewanella denitrificans OS217 4019681 YP_564155.1 CDS Sden_3156 NC_007954.1 3785204 3786937 D FAD linked oxidase-like protein 3785204..3786937 Shewanella denitrificans OS217 4019682 YP_564156.1 CDS Sden_3157 NC_007954.1 3787019 3787963 R hypothetical protein complement(3787019..3787963) Shewanella denitrificans OS217 4019683 YP_564157.1 CDS Sden_3158 NC_007954.1 3787963 3788649 R hypothetical protein complement(3787963..3788649) Shewanella denitrificans OS217 4019684 YP_564158.1 CDS Sden_3159 NC_007954.1 3788978 3789862 R regulatory protein, LysR complement(3788978..3789862) Shewanella denitrificans OS217 4019685 YP_564159.1 CDS Sden_3160 NC_007954.1 3789946 3791097 R chromate transporter complement(3789946..3791097) Shewanella denitrificans OS217 4019686 YP_564160.1 CDS Sden_3161 NC_007954.1 3791228 3791704 R regulatory protein, MarR complement(3791228..3791704) Shewanella denitrificans OS217 4019687 YP_564161.1 CDS Sden_3162 NC_007954.1 3791907 3792086 D hypothetical protein 3791907..3792086 Shewanella denitrificans OS217 4019688 YP_564162.1 CDS Sden_3163 NC_007954.1 3792247 3793005 R hypothetical protein complement(3792247..3793005) Shewanella denitrificans OS217 4019689 YP_564163.1 CDS Sden_3164 NC_007954.1 3793109 3795415 R penicillin-binding protein 1B complement(3793109..3795415) Shewanella denitrificans OS217 4019690 YP_564164.1 CDS Sden_3165 NC_007954.1 3795429 3797981 R ATP-dependent helicase HrpB complement(3795429..3797981) Shewanella denitrificans OS217 4019691 YP_564165.1 CDS Sden_3166 NC_007954.1 3798080 3800347 R GGDEF domain-containing protein complement(3798080..3800347) Shewanella denitrificans OS217 4019692 YP_564166.1 CDS Sden_3167 NC_007954.1 3800702 3801340 D 2',5' RNA ligase 3800702..3801340 Shewanella denitrificans OS217 4019693 YP_564167.1 CDS Sden_3168 NC_007954.1 3801436 3802713 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(3801436..3802713) Shewanella denitrificans OS217 4019694 YP_564168.1 CDS Sden_3169 NC_007954.1 3802858 3803574 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3802858..3803574 Shewanella denitrificans OS217 4019695 YP_564169.1 CDS Sden_3170 NC_007954.1 3803692 3804135 D RNA polymerase-binding, DksA 3803692..3804135 Shewanella denitrificans OS217 4019696 YP_564170.1 CDS Sden_3171 NC_007954.1 3804230 3805093 D glutamate--tRNA ligase 3804230..3805093 Shewanella denitrificans OS217 4019697 YP_564171.1 CDS Sden_3172 NC_007954.1 3805298 3806647 D poly(A) polymerase 3805298..3806647 Shewanella denitrificans OS217 4019698 YP_564172.1 CDS Sden_3173 NC_007954.1 3806650 3807132 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3806650..3807132 Shewanella denitrificans OS217 4019699 YP_564173.1 CDS panB NC_007954.1 3807204 3807998 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3807204..3807998 Shewanella denitrificans OS217 4019700 YP_564174.1 CDS panC NC_007954.1 3808067 3808912 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3808067..3808912 Shewanella denitrificans OS217 4019701 YP_564175.1 CDS Sden_3176 NC_007954.1 3809160 3809675 D hypothetical protein 3809160..3809675 Shewanella denitrificans OS217 4019702 YP_564176.1 CDS Sden_3177 NC_007954.1 3809694 3809891 R hypothetical protein complement(3809694..3809891) Shewanella denitrificans OS217 4019703 YP_564177.1 CDS Sden_3178 NC_007954.1 3810007 3811959 D ABC transporter related 3810007..3811959 Shewanella denitrificans OS217 4019704 YP_564178.1 CDS Sden_3179 NC_007954.1 3812204 3812647 D hypothetical protein 3812204..3812647 Shewanella denitrificans OS217 4019705 YP_564179.1 CDS Sden_3180 NC_007954.1 3812624 3813031 R histidine triad (HIT) protein complement(3812624..3813031) Shewanella denitrificans OS217 4019706 YP_564180.1 CDS Sden_3181 NC_007954.1 3813319 3813798 D regulatory protein, MarR 3813319..3813798 Shewanella denitrificans OS217 4019707 YP_564181.1 CDS Sden_3182 NC_007954.1 3814077 3815291 R major facilitator transporter complement(3814077..3815291) Shewanella denitrificans OS217 4019708 YP_564182.1 CDS Sden_3183 NC_007954.1 3815360 3816352 R aldo/keto reductase complement(3815360..3816352) Shewanella denitrificans OS217 4019709 YP_564183.1 CDS Sden_3184 NC_007954.1 3816692 3818284 R glucose-methanol-choline oxidoreductase complement(3816692..3818284) Shewanella denitrificans OS217 4019710 YP_564184.1 CDS Sden_3185 NC_007954.1 3818391 3818894 R twin-arginine translocation pathway signal complement(3818391..3818894) Shewanella denitrificans OS217 4019711 YP_564185.1 CDS Sden_3186 NC_007954.1 3818998 3819969 D alpha/beta hydrolase fold 3818998..3819969 Shewanella denitrificans OS217 4019712 YP_564186.1 CDS Sden_3187 NC_007954.1 3819969 3820211 D hypothetical protein 3819969..3820211 Shewanella denitrificans OS217 4019713 YP_564187.1 CDS Sden_3188 NC_007954.1 3820279 3821151 D phosphoribulokinase 3820279..3821151 Shewanella denitrificans OS217 4019714 YP_564188.1 CDS Sden_3189 NC_007954.1 3821205 3822002 R Sel1-like protein complement(3821205..3822002) Shewanella denitrificans OS217 4019715 YP_564189.1 CDS Sden_3190 NC_007954.1 3822316 3822951 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3822316..3822951 Shewanella denitrificans OS217 4019716 YP_564190.1 CDS astD NC_007954.1 3823031 3824491 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(3823031..3824491) Shewanella denitrificans OS217 4019717 YP_564191.1 CDS Sden_3192 NC_007954.1 3824501 3825520 R arginine N-succinyltransferase complement(3824501..3825520) Shewanella denitrificans OS217 4019718 YP_564192.1 CDS argD NC_007954.1 3825624 3826841 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3825624..3826841) Shewanella denitrificans OS217 4019719 YP_564193.1 CDS Sden_3194 NC_007954.1 3827177 3828319 R hypothetical protein complement(3827177..3828319) Shewanella denitrificans OS217 4019720 YP_564194.1 CDS Sden_3195 NC_007954.1 3828467 3830953 R peptidase S9, prolyl oligopeptidase active site region complement(3828467..3830953) Shewanella denitrificans OS217 4019721 YP_564195.1 CDS Sden_3196 NC_007954.1 3830971 3831543 R glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase complement(3830971..3831543) Shewanella denitrificans OS217 4019722 YP_564196.1 CDS Sden_3197 NC_007954.1 3831637 3832095 R ClpXP protease specificity-enhancing factor complement(3831637..3832095) Shewanella denitrificans OS217 4019723 YP_564197.1 CDS sspA NC_007954.1 3832095 3832724 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3832095..3832724) Shewanella denitrificans OS217 4019724 YP_564198.1 CDS Sden_3199 NC_007954.1 3832819 3833514 R cytochrome c1 complement(3832819..3833514) Shewanella denitrificans OS217 4019725 YP_564199.1 CDS Sden_3200 NC_007954.1 3833514 3834728 R cytochrome b/b6-like protein complement(3833514..3834728) Shewanella denitrificans OS217 4019726 YP_564200.1 CDS Sden_3201 NC_007954.1 3834728 3835318 R ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(3834728..3835318) Shewanella denitrificans OS217 4019727 YP_564201.1 CDS Sden_3202 NC_007954.1 3835770 3836666 R HflC protein complement(3835770..3836666) Shewanella denitrificans OS217 4019728 YP_564202.1 CDS Sden_3203 NC_007954.1 3836670 3837830 R HflK protein complement(3836670..3837830) Shewanella denitrificans OS217 4019729 YP_564203.1 CDS Sden_3204 NC_007954.1 3837863 3839170 R GTP-binding protein, HSR1-related complement(3837863..3839170) Shewanella denitrificans OS217 4019730 YP_564204.1 CDS Sden_3205 NC_007954.1 3839194 3839463 R host factor Hfq complement(3839194..3839463) Shewanella denitrificans OS217 4019731 YP_564205.1 CDS miaA NC_007954.1 3839547 3840446 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3839547..3840446) Shewanella denitrificans OS217 4019732 YP_564206.1 CDS mutL NC_007954.1 3840466 3842463 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3840466..3842463) Shewanella denitrificans OS217 4019733 YP_564207.1 CDS Sden_3208 NC_007954.1 3842470 3843837 R N-acetylmuramoyl-L-alanine amidase complement(3842470..3843837) Shewanella denitrificans OS217 4019734 YP_564208.1 CDS Sden_3209 NC_007954.1 3843840 3844313 R hypothetical protein complement(3843840..3844313) Shewanella denitrificans OS217 4019735 YP_564209.1 CDS Sden_3210 NC_007954.1 3844443 3844898 R hypothetical protein complement(3844443..3844898) Shewanella denitrificans OS217 4019736 YP_564210.1 CDS Sden_3211 NC_007954.1 3845154 3845876 D hypothetical protein 3845154..3845876 Shewanella denitrificans OS217 4019737 YP_564211.1 CDS Sden_3212 NC_007954.1 3847172 3847717 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3847172..3847717) Shewanella denitrificans OS217 4019741 YP_564212.1 CDS Sden_3213 NC_007954.1 3847826 3848887 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3847826..3848887 Shewanella denitrificans OS217 4019742 YP_564213.1 CDS psd NC_007954.1 3848920 3849789 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3848920..3849789 Shewanella denitrificans OS217 4019743 YP_564214.1 CDS Sden_3215 NC_007954.1 3849953 3850675 D glycerophosphoryl diester phosphodiesterase 3849953..3850675 Shewanella denitrificans OS217 4019744 YP_564215.1 CDS Sden_3216 NC_007954.1 3850751 3851086 R hypothetical protein complement(3850751..3851086) Shewanella denitrificans OS217 4019745 YP_564216.1 CDS Sden_3217 NC_007954.1 3851274 3851465 D BFD-like (2Fe-2S)-binding region 3851274..3851465 Shewanella denitrificans OS217 4019746 YP_564217.1 CDS Sden_3218 NC_007954.1 3851689 3854001 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3851689..3854001) Shewanella denitrificans OS217 4019747 YP_564218.1 CDS Sden_3219 NC_007954.1 3853994 3855154 R L-sorbosone dehydrogenase complement(3853994..3855154) Shewanella denitrificans OS217 4019748 YP_564219.1 CDS Sden_3220 NC_007954.1 3855291 3857177 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3855291..3857177) Shewanella denitrificans OS217 4019749 YP_564220.1 CDS Sden_3221 NC_007954.1 3857223 3857798 R hypothetical protein complement(3857223..3857798) Shewanella denitrificans OS217 4019750 YP_564221.1 CDS Sden_3222 NC_007954.1 3857920 3858759 R metallophosphoesterase complement(3857920..3858759) Shewanella denitrificans OS217 4019751 YP_564222.1 CDS Sden_3223 NC_007954.1 3858787 3859254 R hypothetical protein complement(3858787..3859254) Shewanella denitrificans OS217 4019752 YP_564223.1 CDS Sden_3224 NC_007954.1 3859298 3859921 R nucleoside diphosphate pyrophosphatase complement(3859298..3859921) Shewanella denitrificans OS217 4019753 YP_564224.1 CDS tolC NC_007954.1 3860278 3861576 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3860278..3861576 Shewanella denitrificans OS217 4019754 YP_564225.1 CDS Sden_3226 NC_007954.1 3861878 3862621 R hypothetical protein complement(3861878..3862621) Shewanella denitrificans OS217 4019755 YP_564226.1 CDS Sden_3227 NC_007954.1 3862687 3863658 R hypothetical protein complement(3862687..3863658) Shewanella denitrificans OS217 4019756 YP_564227.1 CDS Sden_3228 NC_007954.1 3863671 3864162 R hypothetical protein complement(3863671..3864162) Shewanella denitrificans OS217 4019757 YP_564228.1 CDS Sden_3229 NC_007954.1 3864198 3864935 D enoyl-CoA hydratase/isomerase 3864198..3864935 Shewanella denitrificans OS217 4019758 YP_564229.1 CDS Sden_3230 NC_007954.1 3865014 3865214 R hypothetical protein complement(3865014..3865214) Shewanella denitrificans OS217 4019759 YP_564230.1 CDS Sden_3231 NC_007954.1 3865419 3865736 R hypothetical protein complement(3865419..3865736) Shewanella denitrificans OS217 4019760 YP_564231.1 CDS Sden_3232 NC_007954.1 3866061 3867044 R tRNA-dihydrouridine synthase A complement(3866061..3867044) Shewanella denitrificans OS217 4019761 YP_564232.1 CDS Sden_3233 NC_007954.1 3867209 3868279 D phage integrase 3867209..3868279 Shewanella denitrificans OS217 4019762 YP_564233.1 CDS Sden_3234 NC_007954.1 3868297 3868869 D hypothetical protein 3868297..3868869 Shewanella denitrificans OS217 4019763 YP_564234.1 CDS Sden_3235 NC_007954.1 3868870 3870126 R DNA-directed DNA polymerase complement(3868870..3870126) Shewanella denitrificans OS217 4019764 YP_564235.1 CDS Sden_3236 NC_007954.1 3870127 3870534 R peptidase S24, S26A and S26B complement(3870127..3870534) Shewanella denitrificans OS217 4019765 YP_564236.1 CDS Sden_3237 NC_007954.1 3870627 3870839 R hypothetical protein complement(3870627..3870839) Shewanella denitrificans OS217 4019766 YP_564237.1 CDS Sden_3238 NC_007954.1 3870865 3872646 R hypothetical protein complement(3870865..3872646) Shewanella denitrificans OS217 4019767 YP_564238.1 CDS Sden_3239 NC_007954.1 3872650 3872949 R hypothetical protein complement(3872650..3872949) Shewanella denitrificans OS217 4019768 YP_564239.1 CDS Sden_3240 NC_007954.1 3872942 3873946 R hypothetical protein complement(3872942..3873946) Shewanella denitrificans OS217 4019769 YP_564240.1 CDS Sden_3241 NC_007954.1 3873971 3876376 R hypothetical protein complement(3873971..3876376) Shewanella denitrificans OS217 4019770 YP_564241.1 CDS Sden_3242 NC_007954.1 3876387 3876677 R hypothetical protein complement(3876387..3876677) Shewanella denitrificans OS217 4019771 YP_564242.1 CDS Sden_3243 NC_007954.1 3876785 3881044 R Phage tail tape measure protein TP901, core region complement(3876785..3881044) Shewanella denitrificans OS217 4019772 YP_564243.1 CDS Sden_3244 NC_007954.1 3881135 3881854 R hypothetical protein complement(3881135..3881854) Shewanella denitrificans OS217 4019773 YP_564244.1 CDS Sden_3245 NC_007954.1 3881851 3882276 R hypothetical protein complement(3881851..3882276) Shewanella denitrificans OS217 4019774 YP_564245.1 CDS Sden_3246 NC_007954.1 3882296 3882853 R hypothetical protein complement(3882296..3882853) Shewanella denitrificans OS217 4019775 YP_564246.1 CDS Sden_3247 NC_007954.1 3882857 3883189 R hypothetical protein complement(3882857..3883189) Shewanella denitrificans OS217 4019776 YP_564247.1 CDS Sden_3248 NC_007954.1 3883182 3883502 R Gifsy-2 prophage; RecA/RadA recombinase complement(3883182..3883502) Shewanella denitrificans OS217 4019777 YP_564248.1 CDS Sden_3249 NC_007954.1 3883568 3885571 R peptidase S14, ClpP complement(3883568..3885571) Shewanella denitrificans OS217 4019778 YP_564249.1 CDS Sden_3250 NC_007954.1 3885564 3887138 R phage portal protein, lambda complement(3885564..3887138) Shewanella denitrificans OS217 4019779 YP_564250.1 CDS Sden_3251 NC_007954.1 3887253 3887459 R hypothetical protein complement(3887253..3887459) Shewanella denitrificans OS217 4019780 YP_564251.1 CDS Sden_3252 NC_007954.1 3887488 3889392 R phage terminase GpA complement(3887488..3889392) Shewanella denitrificans OS217 4019781 YP_564252.1 CDS Sden_3253 NC_007954.1 3889445 3889975 R phage DNA packaging Nu1 complement(3889445..3889975) Shewanella denitrificans OS217 4019782 YP_564253.1 CDS Sden_3254 NC_007954.1 3889975 3890349 R hypothetical protein complement(3889975..3890349) Shewanella denitrificans OS217 4019783 YP_564254.1 CDS Sden_3255 NC_007954.1 3890364 3890801 R hypothetical protein complement(3890364..3890801) Shewanella denitrificans OS217 4019784 YP_564255.1 CDS Sden_3256 NC_007954.1 3890791 3891270 R glycoside hydrolase family protein complement(3890791..3891270) Shewanella denitrificans OS217 4019785 YP_564256.1 CDS Sden_3257 NC_007954.1 3891267 3891614 R hypothetical protein complement(3891267..3891614) Shewanella denitrificans OS217 4019786 YP_564257.1 CDS Sden_3258 NC_007954.1 3892165 3892809 R hypothetical protein complement(3892165..3892809) Shewanella denitrificans OS217 4019787 YP_564258.1 CDS Sden_3259 NC_007954.1 3892858 3893217 R hypothetical protein complement(3892858..3893217) Shewanella denitrificans OS217 4019788 YP_564259.1 CDS Sden_3260 NC_007954.1 3893204 3893434 R transciptional regulator complement(3893204..3893434) Shewanella denitrificans OS217 4019789 YP_564260.1 CDS Sden_3261 NC_007954.1 3893477 3894730 R phage integrase complement(3893477..3894730) Shewanella denitrificans OS217 4019809 YP_564261.1 CDS Sden_3262 NC_007954.1 3894944 3895609 R replication P complement(3894944..3895609) Shewanella denitrificans OS217 4019810 YP_564262.1 CDS Sden_3263 NC_007954.1 3895606 3896490 R hypothetical protein complement(3895606..3896490) Shewanella denitrificans OS217 4019811 YP_564263.1 CDS Sden_3264 NC_007954.1 3897013 3897255 R hypothetical protein complement(3897013..3897255) Shewanella denitrificans OS217 4019812 YP_564264.1 CDS Sden_3265 NC_007954.1 3897265 3897906 R hypothetical protein complement(3897265..3897906) Shewanella denitrificans OS217 4019813 YP_564265.1 CDS Sden_3266 NC_007954.1 3898002 3898607 R hypothetical protein complement(3898002..3898607) Shewanella denitrificans OS217 4019814 YP_564266.1 CDS Sden_3267 NC_007954.1 3898639 3898842 R hypothetical protein complement(3898639..3898842) Shewanella denitrificans OS217 4019815 YP_564267.1 CDS Sden_3268 NC_007954.1 3898948 3899637 D transciptional regulator 3898948..3899637 Shewanella denitrificans OS217 4019816 YP_564268.1 CDS Sden_3269 NC_007954.1 3899904 3901796 D N-6 DNA methylase 3899904..3901796 Shewanella denitrificans OS217 4019817 YP_564269.1 CDS Sden_3270 NC_007954.1 3901799 3902776 D hypothetical protein 3901799..3902776 Shewanella denitrificans OS217 4019818 YP_564270.1 CDS Sden_3271 NC_007954.1 3903329 3904180 R hypothetical protein complement(3903329..3904180) Shewanella denitrificans OS217 4019819 YP_564271.1 CDS Sden_3272 NC_007954.1 3904785 3905117 D hypothetical protein 3904785..3905117 Shewanella denitrificans OS217 4019820 YP_564272.1 CDS Sden_3273 NC_007954.1 3905321 3905572 D hypothetical protein 3905321..3905572 Shewanella denitrificans OS217 4019821 YP_564273.1 CDS Sden_3274 NC_007954.1 3905597 3905944 D hypothetical protein 3905597..3905944 Shewanella denitrificans OS217 4019822 YP_564274.1 CDS Sden_3275 NC_007954.1 3905941 3906264 D GP46 3905941..3906264 Shewanella denitrificans OS217 4019823 YP_564275.1 CDS Sden_3276 NC_007954.1 3906261 3906527 D hypothetical protein 3906261..3906527 Shewanella denitrificans OS217 4019824 YP_564276.1 CDS Sden_3277 NC_007954.1 3906524 3906784 D hypothetical protein 3906524..3906784 Shewanella denitrificans OS217 4019825 YP_564277.1 CDS Sden_3278 NC_007954.1 3906781 3907032 D hypothetical protein 3906781..3907032 Shewanella denitrificans OS217 4019826 YP_564278.1 CDS Sden_3279 NC_007954.1 3907099 3907434 D hypothetical protein 3907099..3907434 Shewanella denitrificans OS217 4019827 YP_564279.1 CDS Sden_3280 NC_007954.1 3907472 3908257 R hypothetical protein complement(3907472..3908257) Shewanella denitrificans OS217 4019828 YP_564280.1 CDS Sden_3281 NC_007954.1 3908450 3908992 R yfeABCD locus regulator complement(3908450..3908992) Shewanella denitrificans OS217 4019829 YP_564281.1 CDS Sden_3282 NC_007954.1 3909649 3909819 R hypothetical protein complement(3909649..3909819) Shewanella denitrificans OS217 4019830 YP_564282.1 CDS Sden_3283 NC_007954.1 3909855 3910220 R hypothetical protein complement(3909855..3910220) Shewanella denitrificans OS217 4019831 YP_564283.1 CDS Sden_3284 NC_007954.1 3910444 3910860 D peptidyl-tRNA hydrolase domain protein 3910444..3910860 Shewanella denitrificans OS217 4019832 YP_564284.1 CDS Sden_3285 NC_007954.1 3910937 3911392 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3910937..3911392 Shewanella denitrificans OS217 4019833 YP_564285.1 CDS Sden_3286 NC_007954.1 3911538 3912545 D hypothetical protein 3911538..3912545 Shewanella denitrificans OS217 4019834 YP_564286.1 CDS Sden_3287 NC_007954.1 3912621 3914378 R twin-arginine translocation pathway signal complement(3912621..3914378) Shewanella denitrificans OS217 4019835 YP_564287.1 CDS Sden_3288 NC_007954.1 3914677 3915105 D CBS domain-containing protein 3914677..3915105 Shewanella denitrificans OS217 4019836 YP_564288.1 CDS Sden_3289 NC_007954.1 3915188 3916816 R endonuclease I complement(3915188..3916816) Shewanella denitrificans OS217 4019837 YP_564289.1 CDS Sden_3290 NC_007954.1 3917296 3919116 D peptidase S8/S53 subtilisin kexin sedolisin 3917296..3919116 Shewanella denitrificans OS217 4019838 YP_564290.1 CDS Sden_3291 NC_007954.1 3919235 3920434 R hypothetical protein complement(3919235..3920434) Shewanella denitrificans OS217 4019839 YP_564291.1 CDS Sden_3292 NC_007954.1 3920461 3921933 R RNA-metabolising metallo-beta-lactamase complement(3920461..3921933) Shewanella denitrificans OS217 4019840 YP_564292.1 CDS Sden_3293 NC_007954.1 3922323 3923486 D chemotaxis sensory transducer 3922323..3923486 Shewanella denitrificans OS217 4019841 YP_564293.1 CDS Sden_3294 NC_007954.1 3923534 3923896 D response regulator receiver 3923534..3923896 Shewanella denitrificans OS217 4019842 YP_564294.1 CDS Sden_3295 NC_007954.1 3923928 3924242 D Sulfate transporter/antisigma-factor antagonist STAS 3923928..3924242 Shewanella denitrificans OS217 4019843 YP_564295.1 CDS Sden_3296 NC_007954.1 3924286 3926487 D CheW-like protein 3924286..3926487 Shewanella denitrificans OS217 4019844 YP_564296.1 CDS Sden_3297 NC_007954.1 3926520 3928151 D chemotaxis sensory transducer 3926520..3928151 Shewanella denitrificans OS217 4019845 YP_564297.1 CDS Sden_3298 NC_007954.1 3928161 3928724 D CheW-like protein 3928161..3928724 Shewanella denitrificans OS217 4019846 YP_564298.1 CDS Sden_3299 NC_007954.1 3928777 3929604 D protein-glutamate O-methyltransferase 3928777..3929604 Shewanella denitrificans OS217 4019847 YP_564299.1 CDS Sden_3300 NC_007954.1 3929601 3930113 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 3929601..3930113 Shewanella denitrificans OS217 4019848 YP_564300.1 CDS Sden_3301 NC_007954.1 3930110 3931186 D protein-glutamate methylesterase 3930110..3931186 Shewanella denitrificans OS217 4019849 YP_564301.1 CDS Sden_3302 NC_007954.1 3931209 3931703 R peptidyl-prolyl cis-trans isomerase, cyclophilin type complement(3931209..3931703) Shewanella denitrificans OS217 4019850 YP_564302.1 CDS Sden_3303 NC_007954.1 3931857 3933407 R amino acid/peptide transporter complement(3931857..3933407) Shewanella denitrificans OS217 4019851 YP_564303.1 CDS Sden_3304 NC_007954.1 3933561 3935303 D transcriptional regulatory protein-like protein 3933561..3935303 Shewanella denitrificans OS217 4019852 YP_564304.1 CDS Sden_3305 NC_007954.1 3935451 3936242 R hypothetical protein complement(3935451..3936242) Shewanella denitrificans OS217 4019853 YP_564305.1 CDS Sden_3306 NC_007954.1 3936622 3938757 D peptidyl-dipeptidase Dcp 3936622..3938757 Shewanella denitrificans OS217 4019854 YP_564306.1 CDS Sden_3307 NC_007954.1 3939048 3939908 D extracellular solute-binding protein 3939048..3939908 Shewanella denitrificans OS217 4019855 YP_564307.1 CDS Sden_3308 NC_007954.1 3940047 3940325 D PpiC-type peptidyl-prolyl cis-trans isomerase 3940047..3940325 Shewanella denitrificans OS217 4019856 YP_564308.1 CDS Sden_3309 NC_007954.1 3940765 3941046 R hypothetical protein complement(3940765..3941046) Shewanella denitrificans OS217 4019857 YP_564309.1 CDS Sden_3310 NC_007954.1 3941176 3941673 R hypothetical protein complement(3941176..3941673) Shewanella denitrificans OS217 4019858 YP_564310.1 CDS Sden_3311 NC_007954.1 3942093 3943136 R transposase IS116/IS110/IS902 complement(3942093..3943136) Shewanella denitrificans OS217 4019859 YP_564311.1 CDS Sden_3312 NC_007954.1 3943196 3943588 R hypothetical protein complement(3943196..3943588) Shewanella denitrificans OS217 4019860 YP_564312.1 CDS Sden_3313 NC_007954.1 3944411 3945106 R single-strand binding protein complement(3944411..3945106) Shewanella denitrificans OS217 4019861 YP_564313.1 CDS Sden_3314 NC_007954.1 3945195 3946562 R major facilitator transporter complement(3945195..3946562) Shewanella denitrificans OS217 4019862 YP_564314.1 CDS Sden_3315 NC_007954.1 3946820 3949756 D excinuclease ABC, A subunit 3946820..3949756 Shewanella denitrificans OS217 4019863 YP_564315.1 CDS Sden_3316 NC_007954.1 3949803 3950828 D peptidase M28 3949803..3950828 Shewanella denitrificans OS217 4019864 YP_564316.1 CDS Sden_3317 NC_007954.1 3951048 3952883 D DEAD/DEAH box helicase-like protein 3951048..3952883 Shewanella denitrificans OS217 4019865 YP_564317.1 CDS Sden_3318 NC_007954.1 3953076 3954446 R Integrins alpha chain complement(3953076..3954446) Shewanella denitrificans OS217 4019866 YP_564318.1 CDS Sden_3319 NC_007954.1 3954575 3956650 D transcriptional regulatory protein-like protein 3954575..3956650 Shewanella denitrificans OS217 4019867 YP_564319.1 CDS Sden_3320 NC_007954.1 3956651 3957664 D hypothetical protein 3956651..3957664 Shewanella denitrificans OS217 4019868 YP_564320.1 CDS Sden_3321 NC_007954.1 3957809 3958420 R hypothetical protein complement(3957809..3958420) Shewanella denitrificans OS217 4019869 YP_564321.1 CDS Sden_3322 NC_007954.1 3958704 3959240 R Alpha/beta hydrolase fold-3 complement(3958704..3959240) Shewanella denitrificans OS217 4019870 YP_564322.1 CDS Sden_3323 NC_007954.1 3959543 3960520 R hypothetical protein complement(3959543..3960520) Shewanella denitrificans OS217 4019871 YP_564323.1 CDS Sden_3324 NC_007954.1 3960705 3961211 R hypothetical protein complement(3960705..3961211) Shewanella denitrificans OS217 4019872 YP_564324.1 CDS Sden_3325 NC_007954.1 3961524 3962726 D transposase, IS4 3961524..3962726 Shewanella denitrificans OS217 4019873 YP_564325.1 CDS Sden_3326 NC_007954.1 3963175 3963429 R hypothetical protein complement(3963175..3963429) Shewanella denitrificans OS217 4019874 YP_564326.1 CDS Sden_3327 NC_007954.1 3963607 3965055 R peptidase U62, modulator of DNA gyrase complement(3963607..3965055) Shewanella denitrificans OS217 4019875 YP_564327.1 CDS Sden_3328 NC_007954.1 3965093 3965932 R Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3965093..3965932) Shewanella denitrificans OS217 4019876 YP_564328.1 CDS Sden_3329 NC_007954.1 3965942 3970201 R hypothetical protein complement(3965942..3970201) Shewanella denitrificans OS217 4019877 YP_564329.1 CDS Sden_3330 NC_007954.1 3970201 3971691 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3970201..3971691) Shewanella denitrificans OS217 4019878 YP_564330.1 CDS Sden_3331 NC_007954.1 3971749 3972345 R maf protein complement(3971749..3972345) Shewanella denitrificans OS217 4019879 YP_564331.1 CDS Sden_3332 NC_007954.1 3972348 3972839 R rod shape-determining protein MreD complement(3972348..3972839) Shewanella denitrificans OS217 4019880 YP_564332.1 CDS Sden_3333 NC_007954.1 3972832 3973716 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3972832..3973716) Shewanella denitrificans OS217 4019881 YP_564333.1 CDS Sden_3334 NC_007954.1 3973773 3974819 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3973773..3974819) Shewanella denitrificans OS217 4019882 YP_564334.1 CDS Sden_3335 NC_007954.1 3975037 3979698 R hypothetical protein complement(3975037..3979698) Shewanella denitrificans OS217 4019883 YP_564335.1 CDS Sden_3336 NC_007954.1 3979688 3980137 R MSHA biogenesis protein MshP complement(3979688..3980137) Shewanella denitrificans OS217 4019884 YP_564336.1 CDS Sden_3337 NC_007954.1 3980127 3980963 R MSHA biogenesis protein MshO precursor complement(3980127..3980963) Shewanella denitrificans OS217 4019885 YP_564337.1 CDS Sden_3338 NC_007954.1 3980963 3981517 R MSHA pilin protein MshD complement(3980963..3981517) Shewanella denitrificans OS217 4019886 YP_564338.1 CDS Sden_3339 NC_007954.1 3981507 3981980 R methylation complement(3981507..3981980) Shewanella denitrificans OS217 4019887 YP_564339.1 CDS Sden_3340 NC_007954.1 3982161 3982679 R methylation complement(3982161..3982679) Shewanella denitrificans OS217 4019888 YP_564340.1 CDS Sden_3341 NC_007954.1 3982830 3983447 R methylation complement(3982830..3983447) Shewanella denitrificans OS217 4019889 YP_564341.1 CDS Sden_3342 NC_007954.1 3983601 3984131 R hypothetical protein complement(3983601..3984131) Shewanella denitrificans OS217 4019890 YP_564342.1 CDS Sden_3343 NC_007954.1 3984158 3985375 R type II secretion system protein complement(3984158..3985375) Shewanella denitrificans OS217 4019891 YP_564343.1 CDS Sden_3344 NC_007954.1 3985378 3987138 R type II secretion system protein E complement(3985378..3987138) Shewanella denitrificans OS217 4019892 YP_564344.1 CDS Sden_3345 NC_007954.1 3987135 3988394 R tetratricopeptide TPR_2 complement(3987135..3988394) Shewanella denitrificans OS217 4019893 YP_564345.1 CDS Sden_3346 NC_007954.1 3988391 3989305 R MSHA biogenesis protein MshM complement(3988391..3989305) Shewanella denitrificans OS217 4019894 YP_564346.1 CDS Sden_3347 NC_007954.1 3989317 3990966 R type II and III secretion system protein complement(3989317..3990966) Shewanella denitrificans OS217 4019895 YP_564347.1 CDS Sden_3348 NC_007954.1 3990982 3991305 R MSHA biogenesis protein MshK complement(3990982..3991305) Shewanella denitrificans OS217 4019896 YP_564348.1 CDS Sden_3349 NC_007954.1 3991286 3991942 R MSHA biogenesis protein MshJ complement(3991286..3991942) Shewanella denitrificans OS217 4019897 YP_564349.1 CDS Sden_3350 NC_007954.1 3991939 3992547 R hypothetical protein complement(3991939..3992547) Shewanella denitrificans OS217 4019898 YP_564350.1 CDS Sden_3351 NC_007954.1 3992547 3993425 R biogenesis protein MshI complement(3992547..3993425) Shewanella denitrificans OS217 4019899 YP_564351.1 CDS Sden_3352 NC_007954.1 3993595 3995568 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3993595..3995568) Shewanella denitrificans OS217 4019900 YP_564352.1 CDS Sden_3353 NC_007954.1 3995712 3996950 R malate dehydrogenase complement(3995712..3996950) Shewanella denitrificans OS217 4019901 YP_564353.1 CDS rpmE NC_007954.1 3997359 3997571 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(3997359..3997571) Shewanella denitrificans OS217 4019902 YP_564354.1 CDS Sden_3355 NC_007954.1 3997762 3998685 R hypothetical protein complement(3997762..3998685) Shewanella denitrificans OS217 4019903 YP_564355.1 CDS Sden_3356 NC_007954.1 3998818 4001022 D primosomal protein N' 3998818..4001022 Shewanella denitrificans OS217 4019904 YP_564356.1 CDS argS NC_007954.1 4001131 4002876 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4001131..4002876 Shewanella denitrificans OS217 4019905 YP_564357.1 CDS Sden_3358 NC_007954.1 4002879 4003475 D sporulation related 4002879..4003475 Shewanella denitrificans OS217 4019906 YP_564358.1 CDS Sden_3359 NC_007954.1 4003910 4004956 R divergent AAA region complement(4003910..4004956) Shewanella denitrificans OS217 4019907 YP_564359.1 CDS Sden_3360 NC_007954.1 4005405 4006418 R transposase IS116/IS110/IS902 complement(4005405..4006418) Shewanella denitrificans OS217 4019908 YP_564360.1 CDS Sden_3361 NC_007954.1 4007499 4008023 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4007499..4008023 Shewanella denitrificans OS217 4019909 YP_564361.1 CDS hslU NC_007954.1 4008044 4009369 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4008044..4009369 Shewanella denitrificans OS217 4019910 YP_564362.1 CDS Sden_3363 NC_007954.1 4009560 4009943 D hypothetical protein 4009560..4009943 Shewanella denitrificans OS217 4019911 YP_564363.1 CDS Sden_3364 NC_007954.1 4010287 4010538 D hypothetical protein 4010287..4010538 Shewanella denitrificans OS217 4019912 YP_564364.1 CDS Sden_3365 NC_007954.1 4010620 4011150 R hypothetical protein complement(4010620..4011150) Shewanella denitrificans OS217 4019913 YP_564365.1 CDS Sden_3366 NC_007954.1 4011147 4011674 R hypothetical protein complement(4011147..4011674) Shewanella denitrificans OS217 4019914 YP_564366.1 CDS Sden_3367 NC_007954.1 4011726 4012238 R hypothetical protein complement(4011726..4012238) Shewanella denitrificans OS217 4019915 YP_564367.1 CDS Sden_3368 NC_007954.1 4012285 4013565 R cyclopropane-fatty-acyl-phospholipid synthase complement(4012285..4013565) Shewanella denitrificans OS217 4019916 YP_564368.1 CDS Sden_3369 NC_007954.1 4013609 4014433 R hypothetical protein complement(4013609..4014433) Shewanella denitrificans OS217 4019917 YP_564369.1 CDS Sden_3370 NC_007954.1 4014433 4015686 R amine oxidase complement(4014433..4015686) Shewanella denitrificans OS217 4019918 YP_564370.1 CDS Sden_3371 NC_007954.1 4015683 4016402 R short-chain dehydrogenase/reductase SDR complement(4015683..4016402) Shewanella denitrificans OS217 4019919 YP_564371.1 CDS Sden_3372 NC_007954.1 4016403 4016834 R hypothetical protein complement(4016403..4016834) Shewanella denitrificans OS217 4019920 YP_564372.1 CDS Sden_3373 NC_007954.1 4017046 4017720 R anti-sigma factor ChrR complement(4017046..4017720) Shewanella denitrificans OS217 4019921 YP_564373.1 CDS Sden_3374 NC_007954.1 4017704 4018330 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(4017704..4018330) Shewanella denitrificans OS217 4019922 YP_564374.1 CDS Sden_3375 NC_007954.1 4018412 4019110 R hypothetical protein complement(4018412..4019110) Shewanella denitrificans OS217 4019923 YP_564375.1 CDS Sden_3376 NC_007954.1 4019316 4020758 D GGDEF domain-containing protein 4019316..4020758 Shewanella denitrificans OS217 4019924 YP_564376.1 CDS Sden_3377 NC_007954.1 4020846 4023443 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(4020846..4023443) Shewanella denitrificans OS217 4019925 YP_564377.1 CDS Sden_3378 NC_007954.1 4023877 4024554 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 4023877..4024554 Shewanella denitrificans OS217 4019926 YP_564378.1 CDS Sden_3379 NC_007954.1 4024965 4027178 R patatin complement(4024965..4027178) Shewanella denitrificans OS217 4019927 YP_564379.1 CDS Sden_3380 NC_007954.1 4027364 4031803 R GGDEF domain-containing protein complement(4027364..4031803) Shewanella denitrificans OS217 4019928 YP_564380.1 CDS Sden_3381 NC_007954.1 4031969 4033399 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(4031969..4033399) Shewanella denitrificans OS217 4019929 YP_564381.1 CDS aceF NC_007954.1 4033637 4035535 R E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase complement(4033637..4035535) Shewanella denitrificans OS217 4019930 YP_564382.1 CDS aceE NC_007954.1 4035549 4038209 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(4035549..4038209) Shewanella denitrificans OS217 4019931 YP_564383.1 CDS pdhR NC_007954.1 4038311 4039063 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(4038311..4039063) Shewanella denitrificans OS217 4019932 YP_564384.1 CDS Sden_3385 NC_007954.1 4039404 4040387 R involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE complement(4039404..4040387) Shewanella denitrificans OS217 4019933 YP_564385.1 CDS Sden_3386 NC_007954.1 4040468 4041049 R N-acetyl-anhydromuranmyl-L-alanine amidase complement(4040468..4041049) Shewanella denitrificans OS217 4019934 YP_564386.1 CDS Sden_3387 NC_007954.1 4041393 4042268 D nicotinate-nucleotide pyrophosphorylase 4041393..4042268 Shewanella denitrificans OS217 4019935 YP_564387.1 CDS Sden_3388 NC_007954.1 4043125 4043541 D methylation 4043125..4043541 Shewanella denitrificans OS217 4019936 YP_564388.1 CDS Sden_3389 NC_007954.1 4043609 4045318 D type II secretion system protein E 4043609..4045318 Shewanella denitrificans OS217 4019937 YP_564389.1 CDS Sden_3390 NC_007954.1 4045495 4046763 D type II secretion system protein 4045495..4046763 Shewanella denitrificans OS217 4019938 YP_564390.1 CDS Sden_3391 NC_007954.1 4046921 4047838 D prepilin peptidase 4046921..4047838 Shewanella denitrificans OS217 4019939 YP_564391.1 CDS coaE NC_007954.1 4047838 4048458 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4047838..4048458 Shewanella denitrificans OS217 4019940 YP_564392.1 CDS Sden_3393 NC_007954.1 4048468 4049211 D hypothetical protein 4048468..4049211 Shewanella denitrificans OS217 4019941 YP_564393.1 CDS Sden_3394 NC_007954.1 4049249 4049473 D hypothetical protein 4049249..4049473 Shewanella denitrificans OS217 4019942 YP_564394.1 CDS Sden_3395 NC_007954.1 4049482 4049877 D mutator mutT protein 4049482..4049877 Shewanella denitrificans OS217 4019943 YP_564395.1 CDS Sden_3396 NC_007954.1 4050197 4052584 D GGDEF domain-containing protein 4050197..4052584 Shewanella denitrificans OS217 4019944 YP_564396.1 CDS Sden_3397 NC_007954.1 4052724 4053275 D acetyltransferase 4052724..4053275 Shewanella denitrificans OS217 4019945 YP_564397.1 CDS Sden_3398 NC_007954.1 4053322 4054650 D FAD dependent oxidoreductase 4053322..4054650 Shewanella denitrificans OS217 4019946 YP_564398.1 CDS Sden_3399 NC_007954.1 4055123 4056010 D transposase, IS4 4055123..4056010 Shewanella denitrificans OS217 4019947 YP_564399.1 CDS Sden_3400 NC_007954.1 4056046 4056594 R hypothetical protein complement(4056046..4056594) Shewanella denitrificans OS217 4019948 YP_564400.1 CDS Sden_3401 NC_007954.1 4056594 4057097 R hypothetical protein complement(4056594..4057097) Shewanella denitrificans OS217 4019949 YP_564401.1 CDS Sden_3402 NC_007954.1 4057248 4057805 R hypothetical protein complement(4057248..4057805) Shewanella denitrificans OS217 4019950 YP_564402.1 CDS Sden_3404 NC_007954.1 4059468 4059893 D transposase 4059468..4059893 Shewanella denitrificans OS217 4019952 YP_564403.1 CDS Sden_3405 NC_007954.1 4060933 4062408 R Na+/H+ antiporter NhaC complement(4060933..4062408) Shewanella denitrificans OS217 4019953 YP_564404.1 CDS Sden_3406 NC_007954.1 4062857 4064155 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4062857..4064155) Shewanella denitrificans OS217 4019954 YP_564405.1 CDS purH NC_007954.1 4064357 4065961 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4064357..4065961) Shewanella denitrificans OS217 4019955 YP_564406.1 CDS zntR NC_007954.1 4066256 4066771 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 4066256..4066771 Shewanella denitrificans OS217 4019956 YP_564407.1 CDS Sden_3409 NC_007954.1 4066774 4068303 D permease 4066774..4068303 Shewanella denitrificans OS217 4019957 YP_564408.1 CDS Sden_3410 NC_007954.1 4069073 4069369 D redox protein regulator of disulfide bond formation-like protein 4069073..4069369 Shewanella denitrificans OS217 4019958 YP_564409.1 CDS Sden_3411 NC_007954.1 4069289 4070842 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4069289..4070842) Shewanella denitrificans OS217 4019959 YP_564410.1 CDS Sden_3412 NC_007954.1 4070844 4072703 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4070844..4072703) Shewanella denitrificans OS217 4019960 YP_564411.1 CDS ilvM NC_007954.1 4072804 4073085 R acetolactate synthase 2 regulatory subunit complement(4072804..4073085) Shewanella denitrificans OS217 4019961 YP_564412.1 CDS Sden_3414 NC_007954.1 4073082 4074755 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4073082..4074755) Shewanella denitrificans OS217 4019962 YP_564413.1 CDS Sden_3415 NC_007954.1 4075136 4076614 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4075136..4076614) Shewanella denitrificans OS217 4019963 YP_564414.1 CDS Sden_3416 NC_007954.1 4076858 4077739 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4076858..4077739 Shewanella denitrificans OS217 4019964 YP_564415.1 CDS Sden_3417 NC_007954.1 4077749 4079056 R hypothetical protein complement(4077749..4079056) Shewanella denitrificans OS217 4019965 YP_564416.1 CDS Sden_3418 NC_007954.1 4079478 4079768 R hypothetical protein complement(4079478..4079768) Shewanella denitrificans OS217 4019966 YP_564417.1 CDS Sden_3419 NC_007954.1 4079765 4080949 R KAP P-loop complement(4079765..4080949) Shewanella denitrificans OS217 4019967 YP_564418.1 CDS Sden_3420 NC_007954.1 4081055 4082275 R hypothetical protein complement(4081055..4082275) Shewanella denitrificans OS217 4019968 YP_564419.1 CDS Sden_3421 NC_007954.1 4082799 4084319 D Mg chelatase-related protein 4082799..4084319 Shewanella denitrificans OS217 4019969 YP_564420.1 CDS Sden_3422 NC_007954.1 4084396 4085295 D acyltransferase 4084396..4085295 Shewanella denitrificans OS217 4019970 YP_564421.1 CDS Sden_3423 NC_007954.1 4085301 4086242 D acyltransferase 4085301..4086242 Shewanella denitrificans OS217 4019971 YP_564422.1 CDS Sden_3424 NC_007954.1 4086333 4090841 D GGDEF domain-containing protein 4086333..4090841 Shewanella denitrificans OS217 4019972 YP_564423.1 CDS Sden_3425 NC_007954.1 4090848 4091558 D hypothetical protein 4090848..4091558 Shewanella denitrificans OS217 4019973 YP_564424.1 CDS Sden_3426 NC_007954.1 4091634 4092443 D hypothetical protein 4091634..4092443 Shewanella denitrificans OS217 4019974 YP_564425.1 CDS Sden_3427 NC_007954.1 4092521 4093201 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(4092521..4093201) Shewanella denitrificans OS217 4019975 YP_564426.1 CDS Sden_3428 NC_007954.1 4093257 4094705 R major facilitator transporter complement(4093257..4094705) Shewanella denitrificans OS217 4019976 YP_564427.1 CDS Sden_3429 NC_007954.1 4095162 4096250 R secretion protein HlyD complement(4095162..4096250) Shewanella denitrificans OS217 4019977 YP_564428.1 CDS Sden_3430 NC_007954.1 4096254 4099367 R acriflavin resistance protein complement(4096254..4099367) Shewanella denitrificans OS217 4019978 YP_564429.1 CDS Sden_3431 NC_007954.1 4099683 4100891 R aminoglycoside phosphotransferase complement(4099683..4100891) Shewanella denitrificans OS217 4019979 YP_564430.1 CDS Sden_3432 NC_007954.1 4100991 4102454 R hypothetical protein complement(4100991..4102454) Shewanella denitrificans OS217 4019980 YP_564431.1 CDS gmk NC_007954.1 4102682 4103305 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4102682..4103305 Shewanella denitrificans OS217 4019981 YP_564432.1 CDS rpoZ NC_007954.1 4103367 4103645 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4103367..4103645 Shewanella denitrificans OS217 4019982 YP_564433.1 CDS Sden_3435 NC_007954.1 4103673 4105778 D bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4103673..4105778 Shewanella denitrificans OS217 4019983 YP_564434.1 CDS Sden_3436 NC_007954.1 4105824 4106207 D YjgF-like protein 4105824..4106207 Shewanella denitrificans OS217 4019984 YP_564435.1 CDS Sden_3437 NC_007954.1 4106540 4108207 D AMP-dependent synthetase and ligase 4106540..4108207 Shewanella denitrificans OS217 4019985 YP_564436.1 CDS Sden_3438 NC_007954.1 4108357 4109289 D K+-dependent Na+/Ca+ exchanger related-protein 4108357..4109289 Shewanella denitrificans OS217 4019986 YP_564437.1 CDS Sden_3439 NC_007954.1 4109385 4111742 R hypothetical protein complement(4109385..4111742) Shewanella denitrificans OS217 4019987 YP_564438.1 CDS Sden_3440 NC_007954.1 4111964 4112359 R hypothetical protein complement(4111964..4112359) Shewanella denitrificans OS217 4019988 YP_564439.1 CDS Sden_3441 NC_007954.1 4112463 4113731 D hypothetical protein 4112463..4113731 Shewanella denitrificans OS217 4019989 YP_564440.1 CDS Sden_3442 NC_007954.1 4113939 4115591 D hypothetical protein 4113939..4115591 Shewanella denitrificans OS217 4019990 YP_564441.1 CDS Sden_3443 NC_007954.1 4115653 4116564 R hypothetical protein complement(4115653..4116564) Shewanella denitrificans OS217 4019991 YP_564442.1 CDS Sden_3444 NC_007954.1 4116676 4117428 R cyclic nucleotide-binding complement(4116676..4117428) Shewanella denitrificans OS217 4019992 YP_564443.1 CDS Sden_3445 NC_007954.1 4117736 4118752 D transposase IS116/IS110/IS902 4117736..4118752 Shewanella denitrificans OS217 4019993 YP_564444.1 CDS Sden_3446 NC_007954.1 4126009 4126587 R thioesterase complement(4126009..4126587) Shewanella denitrificans OS217 4020000 YP_564445.1 CDS Sden_3447 NC_007954.1 4126617 4127054 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4126617..4127054) Shewanella denitrificans OS217 4020001 YP_564446.1 CDS rbn NC_007954.1 4127109 4128050 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(4127109..4128050) Shewanella denitrificans OS217 4020002 YP_564447.1 CDS Sden_3449 NC_007954.1 4128145 4128372 D hypothetical protein 4128145..4128372 Shewanella denitrificans OS217 4020003 YP_564448.1 CDS Sden_3450 NC_007954.1 4128389 4129036 D hypothetical protein 4128389..4129036 Shewanella denitrificans OS217 4020004 YP_564449.1 CDS Sden_3451 NC_007954.1 4129251 4130432 D hypothetical protein 4129251..4130432 Shewanella denitrificans OS217 4020005 YP_564450.1 CDS Sden_3452 NC_007954.1 4130429 4131574 D aminotransferase, class V 4130429..4131574 Shewanella denitrificans OS217 4020006 YP_564451.1 CDS Sden_3453 NC_007954.1 4131543 4132766 R sodium:dicarboxylate symporter complement(4131543..4132766) Shewanella denitrificans OS217 4020007 YP_564452.1 CDS glnA NC_007954.1 4133135 4134544 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4133135..4134544) Shewanella denitrificans OS217 4020008 YP_564453.1 CDS Sden_3455 NC_007954.1 4135179 4136990 D GTP-binding protein TypA 4135179..4136990 Shewanella denitrificans OS217 4020009 YP_564454.1 CDS Sden_3456 NC_007954.1 4137147 4137701 D hypothetical protein 4137147..4137701 Shewanella denitrificans OS217 4020010 YP_564455.1 CDS Sden_3457 NC_007954.1 4137880 4138917 D ATP-binding region, ATPase-like protein 4137880..4138917 Shewanella denitrificans OS217 4020011 YP_564456.1 CDS Sden_3458 NC_007954.1 4138983 4140383 D nitrogen regulation protein NR(I) 4138983..4140383 Shewanella denitrificans OS217 4020012 YP_564457.1 CDS Sden_3459 NC_007954.1 4140425 4141312 R cation diffusion facilitator family transporter complement(4140425..4141312) Shewanella denitrificans OS217 4020013 YP_564458.1 CDS Sden_3460 NC_007954.1 4141375 4141920 R spheroplast protein y precursor complement(4141375..4141920) Shewanella denitrificans OS217 4020014 YP_564459.1 CDS Sden_3461 NC_007954.1 4142197 4142877 D response regulator receiver 4142197..4142877 Shewanella denitrificans OS217 4020015 YP_564460.1 CDS Sden_3462 NC_007954.1 4142874 4144289 D ATP-binding region, ATPase-like protein 4142874..4144289 Shewanella denitrificans OS217 4020016 YP_564461.1 CDS Sden_3463 NC_007954.1 4144328 4144660 D hypothetical protein 4144328..4144660 Shewanella denitrificans OS217 4020017 YP_564462.1 CDS Sden_3464 NC_007954.1 4145015 4148071 R cation/multidrug efflux pump-like protein complement(4145015..4148071) Shewanella denitrificans OS217 4020018 YP_564463.1 CDS Sden_3465 NC_007954.1 4148073 4148714 R hypothetical protein complement(4148073..4148714) Shewanella denitrificans OS217 4020019 YP_564464.1 CDS Sden_3466 NC_007954.1 4148717 4149874 R FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(4148717..4149874) Shewanella denitrificans OS217 4020020 YP_564465.1 CDS Sden_3467 NC_007954.1 4150285 4151508 R hypothetical protein complement(4150285..4151508) Shewanella denitrificans OS217 4020021 YP_564466.1 CDS Sden_3468 NC_007954.1 4151505 4152782 R hypothetical protein complement(4151505..4152782) Shewanella denitrificans OS217 4020022 YP_564467.1 CDS Sden_3469 NC_007954.1 4152775 4154064 R hypothetical protein complement(4152775..4154064) Shewanella denitrificans OS217 4020023 YP_564468.1 CDS Sden_3470 NC_007954.1 4154078 4154362 R ferredoxin complement(4154078..4154362) Shewanella denitrificans OS217 4020024 YP_564469.1 CDS Sden_3471 NC_007954.1 4154385 4155644 R major facilitator transporter complement(4154385..4155644) Shewanella denitrificans OS217 4020025 YP_564470.1 CDS Sden_3472 NC_007954.1 4155674 4156423 R hypothetical protein complement(4155674..4156423) Shewanella denitrificans OS217 4020026 YP_564471.1 CDS Sden_3473 NC_007954.1 4157388 4158197 D TPR repeat-containing protein 4157388..4158197 Shewanella denitrificans OS217 4020027 YP_564472.1 CDS Sden_3474 NC_007954.1 4158500 4159564 D histidine kinase, dimerisation and phosphoacceptor region 4158500..4159564 Shewanella denitrificans OS217 4020028 YP_564473.1 CDS Sden_3475 NC_007954.1 4159561 4160184 D response regulator receiver 4159561..4160184 Shewanella denitrificans OS217 4020029 YP_564474.1 CDS Sden_3476 NC_007954.1 4161629 4163704 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4161629..4163704 Shewanella denitrificans OS217 4020030 YP_564475.1 CDS Sden_3477 NC_007954.1 4163852 4164778 D hypothetical protein 4163852..4164778 Shewanella denitrificans OS217 4020031 YP_564476.1 CDS Sden_3478 NC_007954.1 4164861 4165454 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(4164861..4165454) Shewanella denitrificans OS217 4020032 YP_564477.1 CDS Sden_3479 NC_007954.1 4165664 4166143 R hypothetical protein complement(4165664..4166143) Shewanella denitrificans OS217 4020033 YP_564478.1 CDS Sden_3480 NC_007954.1 4166217 4166855 R electron transport protein SCO1/SenC complement(4166217..4166855) Shewanella denitrificans OS217 4020034 YP_564479.1 CDS Sden_3481 NC_007954.1 4166897 4167853 R hypothetical protein complement(4166897..4167853) Shewanella denitrificans OS217 4020035 YP_564480.1 CDS Sden_3482 NC_007954.1 4167942 4169117 R nitrite reductase, copper containing complement(4167942..4169117) Shewanella denitrificans OS217 4020036 YP_564481.1 CDS Sden_3483 NC_007954.1 4169389 4170453 R WD-40 repeat-containing protein complement(4169389..4170453) Shewanella denitrificans OS217 4020037 YP_564482.1 CDS Sden_3484 NC_007954.1 4170591 4171052 D RNA methyltransferase TrmH, group 2 4170591..4171052 Shewanella denitrificans OS217 4020038 YP_564483.1 CDS Sden_3485 NC_007954.1 4171187 4172695 R peptidase M16-like protein complement(4171187..4172695) Shewanella denitrificans OS217 4020039 YP_564484.1 CDS Sden_3486 NC_007954.1 4172695 4174020 R peptidase M16-like protein complement(4172695..4174020) Shewanella denitrificans OS217 4020040 YP_564485.1 CDS Sden_3487 NC_007954.1 4174220 4175527 R peptidase M20D, amidohydrolase complement(4174220..4175527) Shewanella denitrificans OS217 4020041 YP_564486.1 CDS Sden_3488 NC_007954.1 4176396 4177181 R hypothetical protein complement(4176396..4177181) Shewanella denitrificans OS217 4020042 YP_564487.1 CDS Sden_3489 NC_007954.1 4177902 4178834 D transposase, IS4 4177902..4178834 Shewanella denitrificans OS217 4020043 YP_564488.1 CDS Sden_3490 NC_007954.1 4179902 4180213 D glycine betaine/choline/proline transport system permease protein 4179902..4180213 Shewanella denitrificans OS217 4020044 YP_564489.1 CDS Sden_3491 NC_007954.1 4180210 4181061 D integrase catalytic subunit 4180210..4181061 Shewanella denitrificans OS217 4020045 YP_564490.1 CDS Sden_3492 NC_007954.1 4181222 4181677 R hypothetical protein complement(4181222..4181677) Shewanella denitrificans OS217 4020046 YP_564491.1 CDS Sden_3493 NC_007954.1 4181705 4182322 R hypothetical protein complement(4181705..4182322) Shewanella denitrificans OS217 4020047 YP_564492.1 CDS Sden_3494 NC_007954.1 4182504 4183712 R Bcr/CflA subfamily drug resistance transporter complement(4182504..4183712) Shewanella denitrificans OS217 4020048 YP_564493.1 CDS Sden_3495 NC_007954.1 4183825 4184793 D regulatory protein, LysR 4183825..4184793 Shewanella denitrificans OS217 4020049 YP_564494.1 CDS Sden_3496 NC_007954.1 4184992 4185285 D hypothetical protein 4184992..4185285 Shewanella denitrificans OS217 4020050 YP_564495.1 CDS Sden_3497 NC_007954.1 4185358 4186068 R hypothetical protein complement(4185358..4186068) Shewanella denitrificans OS217 4020051 YP_564496.1 CDS Sden_3498 NC_007954.1 4186320 4186898 D hypothetical protein 4186320..4186898 Shewanella denitrificans OS217 4020052 YP_564497.1 CDS Sden_3499 NC_007954.1 4187040 4187489 D hypothetical protein 4187040..4187489 Shewanella denitrificans OS217 4020053 YP_564498.1 CDS Sden_3500 NC_007954.1 4187520 4188788 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4187520..4188788) Shewanella denitrificans OS217 4020054 YP_564499.1 CDS Sden_3501 NC_007954.1 4188974 4189798 R hypothetical protein complement(4188974..4189798) Shewanella denitrificans OS217 4020055 YP_564500.1 CDS Sden_3502 NC_007954.1 4190065 4190919 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4190065..4190919) Shewanella denitrificans OS217 4020056 YP_564501.1 CDS Sden_3503 NC_007954.1 4191200 4192165 R hypothetical protein complement(4191200..4192165) Shewanella denitrificans OS217 4020057 YP_564502.1 CDS Sden_3504 NC_007954.1 4192162 4192848 R ABC transporter related complement(4192162..4192848) Shewanella denitrificans OS217 4020058 YP_564503.1 CDS Sden_3505 NC_007954.1 4192852 4194315 R signal recognition particle-docking protein FtsY complement(4192852..4194315) Shewanella denitrificans OS217 4020059 YP_564504.1 CDS Sden_3506 NC_007954.1 4194549 4195124 D hypothetical protein 4194549..4195124 Shewanella denitrificans OS217 4020060 YP_564505.1 CDS Sden_3507 NC_007954.1 4195422 4195907 D hypothetical protein 4195422..4195907 Shewanella denitrificans OS217 4020061 YP_564506.1 CDS Sden_3508 NC_007954.1 4196019 4197401 D secretion protein HlyD 4196019..4197401 Shewanella denitrificans OS217 4020062 YP_564507.1 CDS Sden_3509 NC_007954.1 4197413 4200541 D heavy metal efflux pump CzcA 4197413..4200541 Shewanella denitrificans OS217 4020063 YP_564508.1 CDS Sden_3510 NC_007954.1 4200639 4200911 R hypothetical protein complement(4200639..4200911) Shewanella denitrificans OS217 4020064 YP_564509.1 CDS Sden_3511 NC_007954.1 4200966 4201562 R glutathione S-transferase-like protein complement(4200966..4201562) Shewanella denitrificans OS217 4020065 YP_564510.1 CDS Sden_3512 NC_007954.1 4201784 4202566 R glyoxalase/bleomycin resistance protein/dioxygenase complement(4201784..4202566) Shewanella denitrificans OS217 4020066 YP_564511.1 CDS Sden_3513 NC_007954.1 4202672 4203925 R aromatic amino acid transport protein complement(4202672..4203925) Shewanella denitrificans OS217 4020067 YP_564512.1 CDS Sden_3514 NC_007954.1 4203925 4206348 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4203925..4206348) Shewanella denitrificans OS217 4020068 YP_564513.1 CDS Sden_3515 NC_007954.1 4206652 4207269 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4206652..4207269 Shewanella denitrificans OS217 4020069 YP_564514.1 CDS Sden_3516 NC_007954.1 4207266 4207772 D hypothetical protein 4207266..4207772 Shewanella denitrificans OS217 4020070 YP_564515.1 CDS Sden_3517 NC_007954.1 4208164 4209699 D cytochrome c oxidase, subunit II 4208164..4209699 Shewanella denitrificans OS217 4020071 YP_564516.1 CDS Sden_3518 NC_007954.1 4209709 4211316 D cytochrome-c oxidase 4209709..4211316 Shewanella denitrificans OS217 4020072 YP_564517.1 CDS Sden_3519 NC_007954.1 4211318 4211881 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4211318..4211881 Shewanella denitrificans OS217 4020073 YP_564518.1 CDS Sden_3520 NC_007954.1 4211878 4212753 D cytochrome c oxidase, subunit III 4211878..4212753 Shewanella denitrificans OS217 4020074 YP_564519.1 CDS Sden_3521 NC_007954.1 4212975 4213766 D hypothetical protein 4212975..4213766 Shewanella denitrificans OS217 4020075 YP_564520.1 CDS Sden_3522 NC_007954.1 4213794 4214384 D hypothetical protein 4213794..4214384 Shewanella denitrificans OS217 4020076 YP_564521.1 CDS Sden_3523 NC_007954.1 4214384 4215364 D cytochrome oxidase assembly 4214384..4215364 Shewanella denitrificans OS217 4020077 YP_564522.1 CDS Sden_3524 NC_007954.1 4215378 4216283 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4215378..4216283 Shewanella denitrificans OS217 4020078 YP_564523.1 CDS Sden_3525 NC_007954.1 4216288 4216941 D electron transport protein SCO1/SenC 4216288..4216941 Shewanella denitrificans OS217 4020079 YP_564524.1 CDS Sden_3526 NC_007954.1 4217129 4218871 R KAP P-loop complement(4217129..4218871) Shewanella denitrificans OS217 4020080 YP_564525.1 CDS Sden_3527 NC_007954.1 4219735 4221045 D MATE efflux family protein 4219735..4221045 Shewanella denitrificans OS217 4020081 YP_564526.1 CDS Sden_3528 NC_007954.1 4221140 4221718 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein complement(4221140..4221718) Shewanella denitrificans OS217 4020082 YP_564527.1 CDS Sden_3529 NC_007954.1 4221853 4222734 R competence protein ComF complement(4221853..4222734) Shewanella denitrificans OS217 4020083 YP_564528.1 CDS Sden_3530 NC_007954.1 4222778 4223560 D bioH protein 4222778..4223560 Shewanella denitrificans OS217 4020084 YP_564529.1 CDS Sden_3531 NC_007954.1 4223753 4224157 D hypothetical protein 4223753..4224157 Shewanella denitrificans OS217 4020085 YP_564530.1 CDS Sden_3532 NC_007954.1 4225156 4236312 D amino acid adenylation 4225156..4236312 Shewanella denitrificans OS217 4020086 YP_564531.1 CDS Sden_3533 NC_007954.1 4236322 4238187 D asparagine synthase, glutamine-hydrolyzing 4236322..4238187 Shewanella denitrificans OS217 4020087 YP_564532.1 CDS Sden_3534 NC_007954.1 4238234 4245607 D amino acid adenylation 4238234..4245607 Shewanella denitrificans OS217 4020088 YP_564533.1 CDS Sden_3535 NC_007954.1 4245839 4246939 D major facilitator transporter 4245839..4246939 Shewanella denitrificans OS217 4020089 YP_564534.1 CDS Sden_3536 NC_007954.1 4247162 4248382 R lipoprotein complement(4247162..4248382) Shewanella denitrificans OS217 4020090 YP_564535.1 CDS Sden_3537 NC_007954.1 4248700 4249167 R hypothetical protein complement(4248700..4249167) Shewanella denitrificans OS217 4020091 YP_564536.1 CDS ompR NC_007954.1 4249487 4250209 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4249487..4250209 Shewanella denitrificans OS217 4020092 YP_564537.1 CDS envZ NC_007954.1 4250232 4251548 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4250232..4251548 Shewanella denitrificans OS217 4020093 YP_564538.1 CDS Sden_3540 NC_007954.1 4251760 4253766 D chemotaxis sensory transducer 4251760..4253766 Shewanella denitrificans OS217 4020094 YP_564539.1 CDS Sden_3541 NC_007954.1 4253868 4254341 R alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(4253868..4254341) Shewanella denitrificans OS217 4020095 YP_564540.1 CDS Sden_3542 NC_007954.1 4254538 4255029 R orphan protein complement(4254538..4255029) Shewanella denitrificans OS217 4020096 YP_564541.1 CDS Sden_3543 NC_007954.1 4255095 4256039 R copper resistance D complement(4255095..4256039) Shewanella denitrificans OS217 4020097 YP_564542.1 CDS Sden_3544 NC_007954.1 4256057 4256506 R copper resistance protein CopC complement(4256057..4256506) Shewanella denitrificans OS217 4020098 YP_564543.1 CDS Sden_3545 NC_007954.1 4256571 4257284 R copper resistance B precursor complement(4256571..4257284) Shewanella denitrificans OS217 4020099 YP_564544.1 CDS Sden_3546 NC_007954.1 4257296 4259290 R copper-resistance protein CopA complement(4257296..4259290) Shewanella denitrificans OS217 4020100 YP_564545.1 CDS Sden_3547 NC_007954.1 4259287 4259865 R hypothetical protein complement(4259287..4259865) Shewanella denitrificans OS217 4020101 YP_564546.1 CDS Sden_3548 NC_007954.1 4260009 4260458 R hypothetical protein complement(4260009..4260458) Shewanella denitrificans OS217 4020102 YP_564547.1 CDS Sden_3549 NC_007954.1 4260601 4260840 D hypothetical protein 4260601..4260840 Shewanella denitrificans OS217 4020103 YP_564548.1 CDS Sden_3550 NC_007954.1 4260894 4262138 R major facilitator transporter complement(4260894..4262138) Shewanella denitrificans OS217 4020104 YP_564549.1 CDS Sden_3551 NC_007954.1 4262144 4263154 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(4262144..4263154) Shewanella denitrificans OS217 4020105 YP_564550.1 CDS Sden_3552 NC_007954.1 4263253 4264170 R low molecular weight phosphotyrosine protein phosphatase complement(4263253..4264170) Shewanella denitrificans OS217 4020106 YP_564551.1 CDS Sden_3553 NC_007954.1 4264400 4264660 R hypothetical protein complement(4264400..4264660) Shewanella denitrificans OS217 4020107 YP_564552.1 CDS Sden_3554 NC_007954.1 4265130 4265897 R hypothetical protein complement(4265130..4265897) Shewanella denitrificans OS217 4020108 YP_564553.1 CDS Sden_3555 NC_007954.1 4266579 4266794 R hypothetical protein complement(4266579..4266794) Shewanella denitrificans OS217 4020109 YP_564554.1 CDS Sden_3556 NC_007954.1 4266834 4267292 R hypothetical protein complement(4266834..4267292) Shewanella denitrificans OS217 4020110 YP_564555.1 CDS Sden_3557 NC_007954.1 4267348 4267812 R GCN5-related N-acetyltransferase complement(4267348..4267812) Shewanella denitrificans OS217 4020111 YP_564556.1 CDS Sden_3558 NC_007954.1 4267937 4268548 R hypothetical protein complement(4267937..4268548) Shewanella denitrificans OS217 4020112 YP_564557.1 CDS Sden_3559 NC_007954.1 4268586 4269242 R hypothetical protein complement(4268586..4269242) Shewanella denitrificans OS217 4020113 YP_564558.1 CDS Sden_3560 NC_007954.1 4269412 4269735 R hypothetical protein complement(4269412..4269735) Shewanella denitrificans OS217 4020114 YP_564559.1 CDS Sden_3561 NC_007954.1 4269907 4270401 D hypothetical protein 4269907..4270401 Shewanella denitrificans OS217 4020115 YP_564560.1 CDS Sden_3562 NC_007954.1 4270430 4272478 R sulfatase complement(4270430..4272478) Shewanella denitrificans OS217 4020116 YP_564561.1 CDS Sden_3563 NC_007954.1 4272993 4273199 D hypothetical protein 4272993..4273199 Shewanella denitrificans OS217 4020117 YP_564562.1 CDS Sden_3564 NC_007954.1 4280078 4280557 R cytochrome C biogenesis protein complement(4280078..4280557) Shewanella denitrificans OS217 4020121 YP_564563.1 CDS Sden_3565 NC_007954.1 4280558 4281112 R periplasmic protein thiol complement(4280558..4281112) Shewanella denitrificans OS217 4020122 YP_564564.1 CDS Sden_3566 NC_007954.1 4281123 4283105 R cytochrome c-type biogenesis protein CcmF complement(4281123..4283105) Shewanella denitrificans OS217 4020123 YP_564565.1 CDS Sden_3567 NC_007954.1 4283477 4284688 D tetratricopeptide region 4283477..4284688 Shewanella denitrificans OS217 4020124 YP_564566.1 CDS Sden_3568 NC_007954.1 4284769 4285062 R cytochrome c, class I complement(4284769..4285062) Shewanella denitrificans OS217 4020125 YP_564567.1 CDS Sden_3569 NC_007954.1 4285358 4286041 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4285358..4286041 Shewanella denitrificans OS217 4020126 YP_564568.1 CDS Sden_3570 NC_007954.1 4286050 4286736 D heme exporter protein CcmB 4286050..4286736 Shewanella denitrificans OS217 4020127 YP_564569.1 CDS Sden_3571 NC_007954.1 4286738 4287484 D heme exporter protein CcmC 4286738..4287484 Shewanella denitrificans OS217 4020128 YP_564570.1 CDS Sden_3572 NC_007954.1 4287484 4287693 D Heme exporter protein D (CcmD) 4287484..4287693 Shewanella denitrificans OS217 4020129 YP_564571.1 CDS Sden_3573 NC_007954.1 4287696 4288187 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4287696..4288187 Shewanella denitrificans OS217 4020130 YP_564572.1 CDS Sden_3574 NC_007954.1 4289496 4290104 R hypothetical protein complement(4289496..4290104) Shewanella denitrificans OS217 4020131 YP_564573.1 CDS Sden_3575 NC_007954.1 4290118 4290807 R hypothetical protein complement(4290118..4290807) Shewanella denitrificans OS217 4020132 YP_564574.1 CDS Sden_3576 NC_007954.1 4291252 4291785 D hypothetical protein 4291252..4291785 Shewanella denitrificans OS217 4020133 YP_564575.1 CDS Sden_3577 NC_007954.1 4291876 4292364 D hypothetical protein 4291876..4292364 Shewanella denitrificans OS217 4020134 YP_564576.1 CDS Sden_3578 NC_007954.1 4292366 4293529 D hypothetical protein 4292366..4293529 Shewanella denitrificans OS217 4020135 YP_564577.1 CDS Sden_3579 NC_007954.1 4293532 4294182 D hypothetical protein 4293532..4294182 Shewanella denitrificans OS217 4020136 YP_564578.1 CDS Sden_3580 NC_007954.1 4294280 4295320 R integrase catalytic subunit complement(4294280..4295320) Shewanella denitrificans OS217 4020137 YP_564579.1 CDS Sden_3581 NC_007954.1 4295495 4296355 R hypothetical protein complement(4295495..4296355) Shewanella denitrificans OS217 4020138 YP_564580.1 CDS Sden_3582 NC_007954.1 4296412 4296669 R hypothetical protein complement(4296412..4296669) Shewanella denitrificans OS217 4020139 YP_564581.1 CDS Sden_3583 NC_007954.1 4296858 4297118 R hypothetical protein complement(4296858..4297118) Shewanella denitrificans OS217 4020140 YP_564582.1 CDS Sden_3584 NC_007954.1 4297233 4297673 R hypothetical protein complement(4297233..4297673) Shewanella denitrificans OS217 4020141 YP_564583.1 CDS Sden_3585 NC_007954.1 4297670 4298539 R hypothetical protein complement(4297670..4298539) Shewanella denitrificans OS217 4020142 YP_564584.1 CDS Sden_3586 NC_007954.1 4298552 4299793 R hypothetical protein complement(4298552..4299793) Shewanella denitrificans OS217 4020143 YP_564585.1 CDS Sden_3587 NC_007954.1 4299801 4301528 R hypothetical protein complement(4299801..4301528) Shewanella denitrificans OS217 4020144 YP_564586.1 CDS Sden_3588 NC_007954.1 4301503 4302066 R phage integrase complement(4301503..4302066) Shewanella denitrificans OS217 4020145 YP_564587.1 CDS Sden_3589 NC_007954.1 4302091 4303032 R integrase catalytic subunit complement(4302091..4303032) Shewanella denitrificans OS217 4020146 YP_564588.1 CDS Sden_3590 NC_007954.1 4303092 4303952 R transposase complement(4303092..4303952) Shewanella denitrificans OS217 4020147 YP_564589.1 CDS Sden_3591 NC_007954.1 4304131 4305579 R hypothetical protein complement(4304131..4305579) Shewanella denitrificans OS217 4020148 YP_564590.1 CDS Sden_3592 NC_007954.1 4305944 4307302 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(4305944..4307302) Shewanella denitrificans OS217 4020149 YP_564591.1 CDS Sden_3593 NC_007954.1 4307513 4308082 R hypothetical protein complement(4307513..4308082) Shewanella denitrificans OS217 4020150 YP_564592.1 CDS Sden_3594 NC_007954.1 4308247 4308987 R hypothetical protein complement(4308247..4308987) Shewanella denitrificans OS217 4020151 YP_564593.1 CDS Sden_3595 NC_007954.1 4309481 4311520 D oligopeptidase A 4309481..4311520 Shewanella denitrificans OS217 4020152 YP_564594.1 CDS Sden_3596 NC_007954.1 4311822 4312484 D type IV pilus assembly PilZ 4311822..4312484 Shewanella denitrificans OS217 4020153 YP_564595.1 CDS Sden_3597 NC_007954.1 4312602 4313183 D hypothetical protein 4312602..4313183 Shewanella denitrificans OS217 4020154 YP_564596.1 CDS Sden_3598 NC_007954.1 4313183 4313416 D helix-turn-helix type 3 4313183..4313416 Shewanella denitrificans OS217 4020155 YP_564597.1 CDS Sden_3599 NC_007954.1 4313467 4314312 D hypothetical protein 4313467..4314312 Shewanella denitrificans OS217 4020156 YP_564598.1 CDS Sden_3600 NC_007954.1 4314453 4314983 D hypothetical protein 4314453..4314983 Shewanella denitrificans OS217 4020157 YP_564599.1 CDS Sden_3601 NC_007954.1 4315314 4316474 D secretion protein HlyD 4315314..4316474 Shewanella denitrificans OS217 4020158 YP_564600.1 CDS Sden_3602 NC_007954.1 4316539 4319679 D hydrophobe/amphiphile efflux-1 HAE1 4316539..4319679 Shewanella denitrificans OS217 4020159 YP_564601.1 CDS Sden_3603 NC_007954.1 4319763 4321475 R GGDEF domain-containing protein complement(4319763..4321475) Shewanella denitrificans OS217 4020160 YP_564602.1 CDS Sden_3604 NC_007954.1 4321503 4321937 R response regulator receiver complement(4321503..4321937) Shewanella denitrificans OS217 4020161 YP_564603.1 CDS Sden_3605 NC_007954.1 4321930 4324551 R ATP-binding region, ATPase-like protein complement(4321930..4324551) Shewanella denitrificans OS217 4020162 YP_564604.1 CDS Sden_3606 NC_007954.1 4325015 4325545 D hypothetical protein 4325015..4325545 Shewanella denitrificans OS217 4020163 YP_564605.1 CDS Sden_3607 NC_007954.1 4325592 4326572 D lytic transglycosylase, catalytic 4325592..4326572 Shewanella denitrificans OS217 4020164 YP_564606.1 CDS Sden_3608 NC_007954.1 4326556 4327974 D peptidase M28 4326556..4327974 Shewanella denitrificans OS217 4020165 YP_564607.1 CDS Sden_3609 NC_007954.1 4328066 4328944 R hypothetical protein complement(4328066..4328944) Shewanella denitrificans OS217 4020166 YP_564608.1 CDS Sden_3610 NC_007954.1 4329091 4329837 D hypothetical protein 4329091..4329837 Shewanella denitrificans OS217 4020167 YP_564609.1 CDS Sden_3611 NC_007954.1 4330139 4331185 R glycosyl transferase family protein complement(4330139..4331185) Shewanella denitrificans OS217 4020168 YP_564610.1 CDS Sden_3612 NC_007954.1 4331294 4332043 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4331294..4332043 Shewanella denitrificans OS217 4020169 YP_564611.1 CDS Sden_3613 NC_007954.1 4332062 4333381 R three-deoxy-D-manno-octulosonic-acid transferase-like protein complement(4332062..4333381) Shewanella denitrificans OS217 4020170 YP_564612.1 CDS Sden_3614 NC_007954.1 4333664 4334311 D regulatory protein, TetR 4333664..4334311 Shewanella denitrificans OS217 4020171 YP_564613.1 CDS Sden_3615 NC_007954.1 4334489 4335682 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4334489..4335682 Shewanella denitrificans OS217 4020172 YP_564614.1 CDS tdh NC_007954.1 4335707 4336735 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4335707..4336735 Shewanella denitrificans OS217 4020173 YP_564615.1 CDS Sden_3617 NC_007954.1 4336827 4337135 D rhodanese-like protein 4336827..4337135 Shewanella denitrificans OS217 4020174 YP_564616.1 CDS Sden_3618 NC_007954.1 4337132 4337974 D rhomboid-like protein 4337132..4337974 Shewanella denitrificans OS217 4020175 YP_564617.1 CDS Sden_3619 NC_007954.1 4338002 4338667 R isoprenoid biosynthesis protein with amidotransferase-like domain complement(4338002..4338667) Shewanella denitrificans OS217 4020176 YP_564618.1 CDS Sden_3620 NC_007954.1 4339054 4341819 D DNA polymerase I 4339054..4341819 Shewanella denitrificans OS217 4020177 YP_564619.1 CDS engB NC_007954.1 4342391 4343050 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4342391..4343050) Shewanella denitrificans OS217 4020178 YP_564620.1 CDS Sden_3622 NC_007954.1 4343305 4343925 D cytochrome c, class I 4343305..4343925 Shewanella denitrificans OS217 4020179 YP_564621.1 CDS Sden_3623 NC_007954.1 4344712 4345383 D hypothetical protein 4344712..4345383 Shewanella denitrificans OS217 4020180 YP_564622.1 CDS Sden_3624 NC_007954.1 4345439 4345987 D hypothetical protein 4345439..4345987 Shewanella denitrificans OS217 4020181 YP_564623.1 CDS Sden_3625 NC_007954.1 4346061 4346528 D hypothetical protein 4346061..4346528 Shewanella denitrificans OS217 4020182 YP_564624.1 CDS Sden_3626 NC_007954.1 4346726 4348066 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4346726..4348066 Shewanella denitrificans OS217 4020183 YP_564625.1 CDS Sden_3627 NC_007954.1 4348154 4349149 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(4348154..4349149) Shewanella denitrificans OS217 4020184 YP_564626.1 CDS Sden_3628 NC_007954.1 4349346 4351145 D hypothetical protein 4349346..4351145 Shewanella denitrificans OS217 4020185 YP_564627.1 CDS Sden_3629 NC_007954.1 4351124 4351411 R hypothetical protein complement(4351124..4351411) Shewanella denitrificans OS217 4020186 YP_564628.1 CDS Sden_3630 NC_007954.1 4351423 4351869 R type IV pilus assembly PilZ complement(4351423..4351869) Shewanella denitrificans OS217 4020187 YP_564629.1 CDS Sden_3631 NC_007954.1 4351887 4352879 R OmpA/MotB complement(4351887..4352879) Shewanella denitrificans OS217 4020188 YP_564630.1 CDS Sden_3632 NC_007954.1 4352879 4353736 R MotA/TolQ/ExbB proton channel complement(4352879..4353736) Shewanella denitrificans OS217 4020189 YP_564631.1 CDS fliA NC_007954.1 4353770 4354480 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(4353770..4354480) Shewanella denitrificans OS217 4020190 YP_564632.1 CDS Sden_3634 NC_007954.1 4354491 4354946 R flagellar basal body-associated protein FliL complement(4354491..4354946) Shewanella denitrificans OS217 4020191 YP_564633.1 CDS Sden_3635 NC_007954.1 4354962 4356278 R flagellar hook-length control protein complement(4354962..4356278) Shewanella denitrificans OS217 4020192 YP_564634.1 CDS Sden_3636 NC_007954.1 4356268 4356606 R hypothetical protein complement(4356268..4356606) Shewanella denitrificans OS217 4020193 YP_564635.1 CDS Sden_3637 NC_007954.1 4356653 4357033 R flagellar protein FliS complement(4356653..4357033) Shewanella denitrificans OS217 4020194 YP_564636.1 CDS Sden_3638 NC_007954.1 4357056 4358402 R flagellar hook-associated 2-like protein complement(4357056..4358402) Shewanella denitrificans OS217 4020195 YP_564637.1 CDS Sden_3639 NC_007954.1 4358870 4359670 R flagellin-like protein complement(4358870..4359670) Shewanella denitrificans OS217 4020196 YP_564638.1 CDS Sden_3640 NC_007954.1 4359904 4360923 R hypothetical protein complement(4359904..4360923) Shewanella denitrificans OS217 4020197 YP_564639.1 CDS Sden_3641 NC_007954.1 4360968 4361885 R flagellin-like protein complement(4360968..4361885) Shewanella denitrificans OS217 4020198 YP_564640.1 CDS Sden_3642 NC_007954.1 4361913 4363286 R flagellar hook-associated protein complement(4361913..4363286) Shewanella denitrificans OS217 4020199 YP_564641.1 CDS flgJ NC_007954.1 4363283 4363702 R FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase complement(4363283..4363702) Shewanella denitrificans OS217 4020200 YP_564642.1 CDS flgI NC_007954.1 4363702 4364817 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(4363702..4364817) Shewanella denitrificans OS217 4020201 YP_564643.1 CDS flgH NC_007954.1 4364832 4365491 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(4364832..4365491) Shewanella denitrificans OS217 4020202 YP_564644.1 CDS Sden_3646 NC_007954.1 4365503 4366288 R flagellar basal-body rod FlgG complement(4365503..4366288) Shewanella denitrificans OS217 4020203 YP_564645.1 CDS Sden_3647 NC_007954.1 4366300 4367034 R flagellar basal-body rod FlgF complement(4366300..4367034) Shewanella denitrificans OS217 4020204 YP_564646.1 CDS flgE NC_007954.1 4367046 4368254 R the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE complement(4367046..4368254) Shewanella denitrificans OS217 4020205 YP_564647.1 CDS Sden_3649 NC_007954.1 4368276 4368938 R flagellar hook capping protein complement(4368276..4368938) Shewanella denitrificans OS217 4020206 YP_564648.1 CDS Sden_3650 NC_007954.1 4368941 4369360 R flagellar basal-body rod protein FlgC complement(4368941..4369360) Shewanella denitrificans OS217 4020207 YP_564649.1 CDS flgB NC_007954.1 4369369 4369719 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB complement(4369369..4369719) Shewanella denitrificans OS217 4020208 YP_564650.1 CDS Sden_3652 NC_007954.1 4369924 4370592 D flageller protein FlgA 4369924..4370592 Shewanella denitrificans OS217 4020209 YP_564651.1 CDS Sden_3653 NC_007954.1 4370708 4370989 D hypothetical protein 4370708..4370989 Shewanella denitrificans OS217 4020210 YP_564652.1 CDS Sden_3654 NC_007954.1 4370982 4371446 D hypothetical protein 4370982..4371446 Shewanella denitrificans OS217 4020211 YP_564653.1 CDS Sden_3655 NC_007954.1 4371611 4372033 R hypothetical protein complement(4371611..4372033) Shewanella denitrificans OS217 4020212 YP_564654.1 CDS Sden_3656 NC_007954.1 4372011 4373348 R ATPase FliI/YscN complement(4372011..4373348) Shewanella denitrificans OS217 4020213 YP_564655.1 CDS fliH NC_007954.1 4373338 4374045 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(4373338..4374045) Shewanella denitrificans OS217 4020214 YP_564656.1 CDS fliG NC_007954.1 4374045 4375061 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(4374045..4375061) Shewanella denitrificans OS217 4020215 YP_564657.1 CDS fliF NC_007954.1 4375051 4376748 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein complement(4375051..4376748) Shewanella denitrificans OS217 4020216 YP_564658.1 CDS Sden_3660 NC_007954.1 4376761 4377099 R flagellar hook-basal body complex protein (FliE) complement(4376761..4377099) Shewanella denitrificans OS217 4020217 YP_564659.1 CDS Sden_3661 NC_007954.1 4377148 4378452 R sigma-54 factor, interaction region complement(4377148..4378452) Shewanella denitrificans OS217 4020218 YP_564660.1 CDS Sden_3662 NC_007954.1 4379304 4380185 D hypothetical protein 4379304..4380185 Shewanella denitrificans OS217 4020219 YP_564661.1 CDS Sden_3663 NC_007954.1 4380163 4380531 D surface presentation of antigens (SPOA) protein 4380163..4380531 Shewanella denitrificans OS217 4020220 YP_564662.1 CDS fliP NC_007954.1 4380531 4381262 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4380531..4381262 Shewanella denitrificans OS217 4020221 YP_564663.1 CDS Sden_3665 NC_007954.1 4381268 4381537 D export protein FliQ 4381268..4381537 Shewanella denitrificans OS217 4020222 YP_564664.1 CDS Sden_3666 NC_007954.1 4381539 4382318 D flagellar biosynthetic protein FliR 4381539..4382318 Shewanella denitrificans OS217 4020223 YP_564665.1 CDS Sden_3667 NC_007954.1 4382315 4383445 D flagellar biosynthetic protein FlhB 4382315..4383445 Shewanella denitrificans OS217 4020224 YP_564666.1 CDS Sden_3668 NC_007954.1 4383459 4385540 D flagellar biosynthesis protein FlhA 4383459..4385540 Shewanella denitrificans OS217 4020225 YP_564667.1 CDS Sden_3669 NC_007954.1 4385575 4386564 D alpha/beta hydrolase fold 4385575..4386564 Shewanella denitrificans OS217 4020226 YP_564668.1 CDS Sden_3670 NC_007954.1 4386539 4388941 R GGDEF domain-containing protein complement(4386539..4388941) Shewanella denitrificans OS217 4020227 YP_564669.1 CDS Sden_3671 NC_007954.1 4389310 4391052 D peptidase S8/S53 subtilisin kexin sedolisin 4389310..4391052 Shewanella denitrificans OS217 4020228 YP_564670.1 CDS Sden_3672 NC_007954.1 4391290 4392015 R hypothetical protein complement(4391290..4392015) Shewanella denitrificans OS217 4020229 YP_564671.1 CDS Sden_3673 NC_007954.1 4392559 4393149 R hypothetical protein complement(4392559..4393149) Shewanella denitrificans OS217 4020230 YP_564672.1 CDS Sden_3674 NC_007954.1 4393158 4393742 R hypothetical protein complement(4393158..4393742) Shewanella denitrificans OS217 4020231 YP_564673.1 CDS Sden_3675 NC_007954.1 4393759 4394190 D hypothetical protein 4393759..4394190 Shewanella denitrificans OS217 4020232 YP_564674.1 CDS Sden_3678 NC_007954.1 4397123 4397329 R hypothetical protein complement(4397123..4397329) Shewanella denitrificans OS217 4020235 YP_564675.1 CDS Sden_3679 NC_007954.1 4397555 4397860 R hypothetical protein complement(4397555..4397860) Shewanella denitrificans OS217 4020236 YP_564676.1 CDS Sden_3680 NC_007954.1 4397836 4398813 R hypothetical protein complement(4397836..4398813) Shewanella denitrificans OS217 4020237 YP_564677.1 CDS Sden_3681 NC_007954.1 4398882 4399583 D transposase IS116/IS110/IS902 4398882..4399583 Shewanella denitrificans OS217 4020238 YP_564678.1 CDS Sden_3682 NC_007954.1 4400059 4400649 R hypothetical protein complement(4400059..4400649) Shewanella denitrificans OS217 4020239 YP_564679.1 CDS Sden_3683 NC_007954.1 4400658 4416368 R peptidoglycan-binding LysM complement(4400658..4416368) Shewanella denitrificans OS217 4020240 YP_564680.1 CDS Sden_3684 NC_007954.1 4416453 4417859 R triple helix repeat-containing collagen complement(4416453..4417859) Shewanella denitrificans OS217 4020241 YP_564681.1 CDS Sden_3685 NC_007954.1 4417856 4419337 R triple helix repeat-containing collagen complement(4417856..4419337) Shewanella denitrificans OS217 4020242 YP_564682.1 CDS Sden_3686 NC_007954.1 4419337 4421100 R triple helix repeat-containing collagen complement(4419337..4421100) Shewanella denitrificans OS217 4020243 YP_564683.1 CDS Sden_3687 NC_007954.1 4421209 4422354 R tetratricopeptide TPR_2 complement(4421209..4422354) Shewanella denitrificans OS217 4020244 YP_564684.1 CDS mogA NC_007954.1 4422792 4423325 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(4422792..4423325) Shewanella denitrificans OS217 4020245 YP_564685.1 CDS Sden_3689 NC_007954.1 4423415 4423954 R NLP/P60 family lipoprotein complement(4423415..4423954) Shewanella denitrificans OS217 4020246 YP_564686.1 CDS Sden_3690 NC_007954.1 4424145 4424576 R regulatory protein, MerR complement(4424145..4424576) Shewanella denitrificans OS217 4020247 YP_564687.1 CDS Sden_3691 NC_007954.1 4424576 4426957 R heavy metal translocating P-type ATPase complement(4424576..4426957) Shewanella denitrificans OS217 4020248 YP_564688.1 CDS Sden_3692 NC_007954.1 4427459 4427719 D hypothetical protein 4427459..4427719 Shewanella denitrificans OS217 4020249 YP_564689.1 CDS Sden_3693 NC_007954.1 4428019 4428972 R hypothetical protein complement(4428019..4428972) Shewanella denitrificans OS217 4020250 YP_564690.1 CDS Sden_3694 NC_007954.1 4429105 4430301 R HI0933-like protein complement(4429105..4430301) Shewanella denitrificans OS217 4020251 YP_564691.1 CDS gpsA NC_007954.1 4430682 4431701 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4430682..4431701) Shewanella denitrificans OS217 4020252 YP_564692.1 CDS Sden_3696 NC_007954.1 4431706 4432200 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(4431706..4432200) Shewanella denitrificans OS217 4020253 YP_564693.1 CDS Sden_3697 NC_007954.1 4432337 4432771 R rhodanese-like protein complement(4432337..4432771) Shewanella denitrificans OS217 4020254 YP_564694.1 CDS Sden_3698 NC_007954.1 4433061 4434605 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4433061..4434605 Shewanella denitrificans OS217 4020255 YP_564695.1 CDS Sden_3699 NC_007954.1 4434616 4435755 D peptidase M23B 4434616..4435755 Shewanella denitrificans OS217 4020256 YP_564696.1 CDS Sden_3700 NC_007954.1 4435795 4437000 D carboxyl-terminal protease 4435795..4437000 Shewanella denitrificans OS217 4020257 YP_564697.1 CDS Sden_3701 NC_007954.1 4437042 4437779 D hypothetical protein 4437042..4437779 Shewanella denitrificans OS217 4020258 YP_564698.1 CDS Sden_3702 NC_007954.1 4437754 4438209 R hypothetical protein complement(4437754..4438209) Shewanella denitrificans OS217 4020259 YP_564699.1 CDS Sden_3703 NC_007954.1 4438240 4438491 R hypothetical protein complement(4438240..4438491) Shewanella denitrificans OS217 4020260 YP_564700.1 CDS Sden_3704 NC_007954.1 4445382 4446809 R 4Fe-4S ferredoxin, iron-sulfur binding complement(4445382..4446809) Shewanella denitrificans OS217 4020266 YP_564701.1 CDS Sden_3705 NC_007954.1 4447098 4447397 D hypothetical protein 4447098..4447397 Shewanella denitrificans OS217 4020267 YP_564702.1 CDS Sden_3706 NC_007954.1 4447778 4447978 D hypothetical protein 4447778..4447978 Shewanella denitrificans OS217 4020268 YP_564703.1 CDS Sden_3707 NC_007954.1 4447996 4448541 R transport-associated complement(4447996..4448541) Shewanella denitrificans OS217 4020269 YP_564704.1 CDS Sden_3708 NC_007954.1 4448745 4449224 R hypothetical protein complement(4448745..4449224) Shewanella denitrificans OS217 4020270 YP_564705.1 CDS Sden_3709 NC_007954.1 4449504 4450877 D sigma-54 factor, interaction region 4449504..4450877 Shewanella denitrificans OS217 4020271 YP_564706.1 CDS Sden_3710 NC_007954.1 4450881 4452524 R hypothetical protein complement(4450881..4452524) Shewanella denitrificans OS217 4020272 YP_564707.1 CDS Sden_3711 NC_007954.1 4452585 4452779 R hypothetical protein complement(4452585..4452779) Shewanella denitrificans OS217 4020273 YP_564708.1 CDS Sden_3712 NC_007954.1 4452802 4452978 R hypothetical protein complement(4452802..4452978) Shewanella denitrificans OS217 4020274 YP_564709.1 CDS Sden_3713 NC_007954.1 4453205 4454980 R protein kinase complement(4453205..4454980) Shewanella denitrificans OS217 4020275 YP_564710.1 CDS Sden_3714 NC_007954.1 4454990 4456465 R nitrate transporter complement(4454990..4456465) Shewanella denitrificans OS217 4020276 YP_564711.1 CDS Sden_3715 NC_007954.1 4456602 4456934 R nitrite reductase (NAD(P)H) large subunit, NirD complement(4456602..4456934) Shewanella denitrificans OS217 4020277 YP_564712.1 CDS Sden_3716 NC_007954.1 4456943 4459528 R nitrite reductase (NAD(P)H) large subunit, NirB complement(4456943..4459528) Shewanella denitrificans OS217 4020278 YP_564713.1 CDS Sden_3717 NC_007954.1 4459584 4460450 R uroporphyrin-III C-methyltransferase complement(4459584..4460450) Shewanella denitrificans OS217 4020279 YP_564714.1 CDS Sden_3718 NC_007954.1 4460872 4463562 D molybdopterin oxidoreductase 4460872..4463562 Shewanella denitrificans OS217 4020280 YP_564715.1 CDS Sden_3719 NC_007954.1 4463643 4464500 D esterase 4463643..4464500 Shewanella denitrificans OS217 4020281 YP_564716.1 CDS Sden_3720 NC_007954.1 4464828 4466030 D transposase, mutator type 4464828..4466030 Shewanella denitrificans OS217 4020282 YP_564717.1 CDS Sden_3721 NC_007954.1 4466019 4466330 R transciptional regulator complement(4466019..4466330) Shewanella denitrificans OS217 4020283 YP_564718.1 CDS Sden_3722 NC_007954.1 4466677 4470039 D ATP-binding region, ATPase-like protein 4466677..4470039 Shewanella denitrificans OS217 4020284 YP_564719.1 CDS Sden_3723 NC_007954.1 4470032 4471048 D response regulator receiver 4470032..4471048 Shewanella denitrificans OS217 4020285 YP_564720.1 CDS Sden_3724 NC_007954.1 4471252 4471521 D hypothetical protein 4471252..4471521 Shewanella denitrificans OS217 4020286 YP_564721.1 CDS Sden_3725 NC_007954.1 4471884 4474970 D protein kinase 4471884..4474970 Shewanella denitrificans OS217 4020287 YP_564722.1 CDS Sden_3726 NC_007954.1 4475019 4475975 D forkhead-associated 4475019..4475975 Shewanella denitrificans OS217 4020288 YP_564723.1 CDS Sden_3727 NC_007954.1 4476080 4476448 R hypothetical protein complement(4476080..4476448) Shewanella denitrificans OS217 4020289 YP_564724.1 CDS Sden_3728 NC_007954.1 4476626 4485895 R cadherin complement(4476626..4485895) Shewanella denitrificans OS217 4020290 YP_564725.1 CDS Sden_3729 NC_007954.1 4486161 4486757 R phage tail Collar complement(4486161..4486757) Shewanella denitrificans OS217 4020291 YP_564726.1 CDS Sden_3730 NC_007954.1 4487003 4488091 R hypothetical protein complement(4487003..4488091) Shewanella denitrificans OS217 4020292 YP_564727.1 CDS Sden_3731 NC_007954.1 4488349 4488690 R hypothetical protein complement(4488349..4488690) Shewanella denitrificans OS217 4020293 YP_564728.1 CDS Sden_3732 NC_007954.1 4488693 4489808 R hypothetical protein complement(4488693..4489808) Shewanella denitrificans OS217 4020294 YP_564729.1 CDS Sden_3733 NC_007954.1 4489805 4496941 R amino acid adenylation complement(4489805..4496941) Shewanella denitrificans OS217 4020295 YP_564730.1 CDS Sden_3734 NC_007954.1 4496944 4497186 R hypothetical protein complement(4496944..4497186) Shewanella denitrificans OS217 4020296 YP_564731.1 CDS Sden_3735 NC_007954.1 4497223 4499499 R penicillin amidase complement(4497223..4499499) Shewanella denitrificans OS217 4020297 YP_564732.1 CDS Sden_3736 NC_007954.1 4499499 4500983 R AMP-dependent synthetase and ligase complement(4499499..4500983) Shewanella denitrificans OS217 4020298 YP_564733.1 CDS Sden_3737 NC_007954.1 4500984 4504028 R acriflavin resistance protein complement(4500984..4504028) Shewanella denitrificans OS217 4020299 YP_564734.1 CDS Sden_3738 NC_007954.1 4504028 4505110 R secretion protein HlyD complement(4504028..4505110) Shewanella denitrificans OS217 4020300 YP_564735.1 CDS Sden_3739 NC_007954.1 4505092 4506171 R hypothetical protein complement(4505092..4506171) Shewanella denitrificans OS217 4020301 YP_564736.1 CDS Sden_3740 NC_007954.1 4506244 4506960 R TENA/THI-4 protein complement(4506244..4506960) Shewanella denitrificans OS217 4020302 YP_564737.1 CDS Sden_3741 NC_007954.1 4506960 4507508 R hypothetical protein complement(4506960..4507508) Shewanella denitrificans OS217 4020303 YP_564738.1 CDS Sden_3742 NC_007954.1 4507521 4508126 R negative transcriptional regulator complement(4507521..4508126) Shewanella denitrificans OS217 4020304 YP_564739.1 CDS Sden_3743 NC_007954.1 4508656 4510485 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4508656..4510485) Shewanella denitrificans OS217 4020305 YP_564740.1 CDS Sden_3744 NC_007954.1 4510540 4511310 R regulatory protein, DeoR complement(4510540..4511310) Shewanella denitrificans OS217 4020306 YP_564741.1 CDS Sden_3745 NC_007954.1 4511528 4512154 R isochorismatase hydrolase complement(4511528..4512154) Shewanella denitrificans OS217 4020307 YP_564742.1 CDS Sden_3746 NC_007954.1 4512218 4513081 R Pirin-like protein complement(4512218..4513081) Shewanella denitrificans OS217 4020308 YP_564743.1 CDS Sden_3747 NC_007954.1 4513203 4514108 D LysR, substrate-binding 4513203..4514108 Shewanella denitrificans OS217 4020309 YP_564744.1 CDS Sden_3748 NC_007954.1 4514212 4515576 R UDP-N-acetylglucosamine pyrophosphorylase complement(4514212..4515576) Shewanella denitrificans OS217 4020310 YP_564745.1 CDS Sden_3749 NC_007954.1 4516371 4516985 R regulatory protein, LuxR complement(4516371..4516985) Shewanella denitrificans OS217 4020311 YP_564746.1 CDS Sden_3750 NC_007954.1 4517306 4519582 R transcriptional regulatory protein-like protein complement(4517306..4519582) Shewanella denitrificans OS217 4020312 YP_564747.1 CDS atpC NC_007954.1 4519846 4520274 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4519846..4520274) Shewanella denitrificans OS217 4020313 YP_564748.1 CDS Sden_3752 NC_007954.1 4520310 4521701 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4520310..4521701) Shewanella denitrificans OS217 4020314 YP_564749.1 CDS Sden_3753 NC_007954.1 4521738 4522598 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4521738..4522598) Shewanella denitrificans OS217 4020315 YP_564750.1 CDS Sden_3754 NC_007954.1 4522649 4524190 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4522649..4524190) Shewanella denitrificans OS217 4020316 YP_564751.1 CDS Sden_3755 NC_007954.1 4524205 4524738 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4524205..4524738) Shewanella denitrificans OS217 4020317 YP_564752.1 CDS Sden_3756 NC_007954.1 4524753 4525223 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4524753..4525223) Shewanella denitrificans OS217 4020318 YP_564753.1 CDS Sden_3757 NC_007954.1 4525261 4525512 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4525261..4525512) Shewanella denitrificans OS217 4020319 YP_564754.1 CDS Sden_3758 NC_007954.1 4525579 4526373 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4525579..4526373) Shewanella denitrificans OS217 4020320 YP_564755.1 CDS Sden_3759 NC_007954.1 4526386 4526769 R ATP synthase I chain complement(4526386..4526769) Shewanella denitrificans OS217 4020321 YP_564756.1 CDS Sden_3760 NC_007954.1 4526991 4527875 R parB-like partition proteins complement(4526991..4527875) Shewanella denitrificans OS217 4020322 YP_564757.1 CDS Sden_3761 NC_007954.1 4527885 4528670 R cobyrinic acid a,c-diamide synthase complement(4527885..4528670) Shewanella denitrificans OS217 4020323 YP_564758.1 CDS gidB NC_007954.1 4528747 4529373 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4528747..4529373) Shewanella denitrificans OS217 4020324 YP_564759.1 CDS Sden_3763 NC_007954.1 4529486 4531375 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(4529486..4531375) Shewanella denitrificans OS217 4020325 YP_564760.1 CDS Sden_3764 NC_007954.1 4531829 4532272 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4531829..4532272) Shewanella denitrificans OS217 4020326 YP_564761.1 CDS Sden_3765 NC_007954.1 4532438 4532992 D sodium:alanine symporter 4532438..4532992 Shewanella denitrificans OS217 4020327 YP_564762.1 CDS Sden_3766 NC_007954.1 4533279 4534118 R carboxylesterase complement(4533279..4534118) Shewanella denitrificans OS217 4020328 YP_564763.1 CDS Sden_3767 NC_007954.1 4534181 4535311 R zinc-binding alcohol dehydrogenase complement(4534181..4535311) Shewanella denitrificans OS217 4020329 YP_564764.1 CDS Sden_3768 NC_007954.1 4535444 4536316 D LysR, substrate-binding 4535444..4536316 Shewanella denitrificans OS217 4020330 YP_564765.1 CDS Sden_3769 NC_007954.1 4536374 4537201 R hypothetical protein complement(4536374..4537201) Shewanella denitrificans OS217 4020331 YP_564766.1 CDS Sden_3770 NC_007954.1 4537223 4538131 R S6 modification enzyme RimK complement(4537223..4538131) Shewanella denitrificans OS217 4020332 YP_564767.1 CDS Sden_3771 NC_007954.1 4538318 4540114 D asparagine synthase, glutamine-hydrolyzing 4538318..4540114 Shewanella denitrificans OS217 4020333 YP_564768.1 CDS Sden_3772 NC_007954.1 4540222 4540818 R hypothetical protein complement(4540222..4540818) Shewanella denitrificans OS217 4020334 YP_564769.1 CDS Sden_3773 NC_007954.1 4540987 4541601 R DNA polymerase III, epsilon subunit complement(4540987..4541601) Shewanella denitrificans OS217 4020335 YP_564770.1 CDS trmE NC_007954.1 4541643 4543043 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4541643..4543043) Shewanella denitrificans OS217 4020336 YP_564771.1 CDS Sden_3775 NC_007954.1 4543095 4544720 R 60 kDa inner membrane insertion protein complement(4543095..4544720) Shewanella denitrificans OS217 4020337 YP_564772.1 CDS Sden_3776 NC_007954.1 4544724 4544978 R hypothetical protein complement(4544724..4544978) Shewanella denitrificans OS217 4020338 YP_564773.1 CDS rnpA NC_007954.1 4544945 4545301 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4544945..4545301) Shewanella denitrificans OS217 4020339 YP_564774.1 CDS rpmH NC_007954.1 4545314 4545451 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4545314..4545451) Shewanella denitrificans OS217 4020340 Sden_R0004 tRNA Sden_R0004 NC_007954.1 178816 178891 D tRNA-Thr 178816..178891 Shewanella denitrificans OS217 4017818 Sden_R0005 tRNA Sden_R0005 NC_007954.1 178901 178985 D tRNA-Tyr 178901..178985 Shewanella denitrificans OS217 4017819 Sden_R0006 tRNA Sden_R0006 NC_007954.1 179022 179095 D tRNA-Gly 179022..179095 Shewanella denitrificans OS217 4017820 Sden_R0008 tRNA Sden_R0008 NC_007954.1 262528 262604 D tRNA-Ile 262528..262604 Shewanella denitrificans OS217 4017955 Sden_R0009 tRNA Sden_R0009 NC_007954.1 262736 262811 D tRNA-Ala 262736..262811 Shewanella denitrificans OS217 4017956 Sden_R0012 tRNA Sden_R0012 NC_007954.1 266570 266645 D tRNA-Thr 266570..266645 Shewanella denitrificans OS217 4017979 Sden_R0018 tRNA Sden_R0018 NC_007954.1 413953 414029 D tRNA-Asp 413953..414029 Shewanella denitrificans OS217 4016689 Sden_R0019 tRNA Sden_R0019 NC_007954.1 476436 476512 D tRNA-Arg 476436..476512 Shewanella denitrificans OS217 4017154 Sden_R0020 tRNA Sden_R0020 NC_007954.1 476585 476660 D tRNA-His 476585..476660 Shewanella denitrificans OS217 4017155 Sden_R0021 tRNA Sden_R0021 NC_007954.1 476790 476866 D tRNA-Pro 476790..476866 Shewanella denitrificans OS217 4017156 Sden_R0022 tRNA Sden_R0022 NC_007954.1 477020 477096 D tRNA-Pro 477020..477096 Shewanella denitrificans OS217 4017829 Sden_R0023 tRNA Sden_R0023 NC_007954.1 619708 619792 D tRNA-Leu 619708..619792 Shewanella denitrificans OS217 4016918 Sden_R0026 tRNA Sden_R0026 NC_007954.1 939527 939603 D tRNA-Met 939527..939603 Shewanella denitrificans OS217 4017044 Sden_R0027 tRNA Sden_R0027 NC_007954.1 939758 939842 D tRNA-Leu 939758..939842 Shewanella denitrificans OS217 4017045 Sden_R0028 tRNA Sden_R0028 NC_007954.1 939891 939965 D tRNA-Gln 939891..939965 Shewanella denitrificans OS217 4017046 Sden_R0029 tRNA Sden_R0029 NC_007954.1 939996 940070 D tRNA-Gln 939996..940070 Shewanella denitrificans OS217 4017047 Sden_R0030 tRNA Sden_R0030 NC_007954.1 940089 940165 D tRNA-Met 940089..940165 Shewanella denitrificans OS217 4017087 Sden_R0031 tRNA Sden_R0031 NC_007954.1 940259 940343 D tRNA-Leu 940259..940343 Shewanella denitrificans OS217 4017088 Sden_R0032 tRNA Sden_R0032 NC_007954.1 940458 940532 D tRNA-Gln 940458..940532 Shewanella denitrificans OS217 4017089 Sden_R0033 tRNA Sden_R0033 NC_007954.1 1144177 1144263 D tRNA-Leu 1144177..1144263 Shewanella denitrificans OS217 4017602 Sden_R0034 tRNA Sden_R0034 NC_007954.1 1144345 1144421 D tRNA-Met 1144345..1144421 Shewanella denitrificans OS217 4017603 Sden_R0036 tRNA Sden_R0036 NC_007954.1 1415392 1415483 D tRNA-Ser 1415392..1415483 Shewanella denitrificans OS217 4017738 Sden_R0037 tRNA Sden_R0037 NC_007954.1 1415506 1415582 D tRNA-Arg 1415506..1415582 Shewanella denitrificans OS217 4017476 Sden_R0038 tRNA Sden_R0038 NC_007954.1 1415608 1415684 D tRNA-Arg 1415608..1415684 Shewanella denitrificans OS217 4017477 Sden_R0039 tRNA Sden_R0039 NC_007954.1 1415750 1415826 D tRNA-Arg 1415750..1415826 Shewanella denitrificans OS217 4017478 Sden_R0040 tRNA Sden_R0040 NC_007954.1 1415835 1415926 D tRNA-Ser 1415835..1415926 Shewanella denitrificans OS217 4017479 Sden_R0041 tRNA Sden_R0041 NC_007954.1 1416008 1416084 D tRNA-Arg 1416008..1416084 Shewanella denitrificans OS217 4017480 Sden_R0043 tRNA Sden_R0043 NC_007954.1 1516326 1516402 R tRNA-Arg complement(1516326..1516402) Shewanella denitrificans OS217 4017582 Sden_R0045 tRNA Sden_R0045 NC_007954.1 1608907 1608983 D tRNA-Ile 1608907..1608983 Shewanella denitrificans OS217 4017748 Sden_R0046 tRNA Sden_R0046 NC_007954.1 1609121 1609196 D tRNA-Ala 1609121..1609196 Shewanella denitrificans OS217 4017749 Sden_R0049 tRNA Sden_R0049 NC_007954.1 1627570 1627645 D tRNA-Lys 1627570..1627645 Shewanella denitrificans OS217 4017360 Sden_R0050 tRNA Sden_R0050 NC_007954.1 1627811 1627886 D tRNA-Lys 1627811..1627886 Shewanella denitrificans OS217 4017361 Sden_R0051 tRNA Sden_R0051 NC_007954.1 1628000 1628075 D tRNA-Lys 1628000..1628075 Shewanella denitrificans OS217 4017362 Sden_R0052 tRNA Sden_R0052 NC_007954.1 1628397 1628472 D tRNA-Lys 1628397..1628472 Shewanella denitrificans OS217 4017363 Sden_R0053 tRNA Sden_R0053 NC_007954.1 1628595 1628670 D tRNA-Lys 1628595..1628670 Shewanella denitrificans OS217 4017332 Sden_R0054 tRNA Sden_R0054 NC_007954.1 1628839 1628914 D tRNA-Lys 1628839..1628914 Shewanella denitrificans OS217 4017333 Sden_R0055 tRNA Sden_R0055 NC_007954.1 1677652 1677727 D tRNA-Gly 1677652..1677727 Shewanella denitrificans OS217 4017428 Sden_R0056 tRNA Sden_R0056 NC_007954.1 1677746 1677819 D tRNA-Cys 1677746..1677819 Shewanella denitrificans OS217 4017429 Sden_R0057 tRNA Sden_R0057 NC_007954.1 1677867 1677952 D tRNA-Leu 1677867..1677952 Shewanella denitrificans OS217 4017430 Sden_R0059 tRNA Sden_R0059 NC_007954.1 1828239 1828329 D tRNA-Ser 1828239..1828329 Shewanella denitrificans OS217 4018045 Sden_R0060 tRNA Sden_R0060 NC_007954.1 1920320 1920405 D tRNA-Leu 1920320..1920405 Shewanella denitrificans OS217 4018130 Sden_R0061 tRNA Sden_R0061 NC_007954.1 2003405 2003481 R tRNA-Val complement(2003405..2003481) Shewanella denitrificans OS217 4018178 Sden_R0062 tRNA Sden_R0062 NC_007954.1 2003853 2003929 R tRNA-Val complement(2003853..2003929) Shewanella denitrificans OS217 4018179 Sden_R0064 tRNA Sden_R0064 NC_007954.1 2119907 2119982 D tRNA-Gly 2119907..2119982 Shewanella denitrificans OS217 4018273 Sden_R0065 tRNA Sden_R0065 NC_007954.1 2120011 2120084 D tRNA-Cys 2120011..2120084 Shewanella denitrificans OS217 4018274 Sden_R0066 tRNA Sden_R0066 NC_007954.1 2120132 2120217 D tRNA-Leu 2120132..2120217 Shewanella denitrificans OS217 4018275 Sden_R0067 tRNA Sden_R0067 NC_007954.1 2136929 2137019 D tRNA-Ser 2136929..2137019 Shewanella denitrificans OS217 4018293 Sden_R0068 tRNA Sden_R0068 NC_007954.1 2188666 2188741 D tRNA-Asn 2188666..2188741 Shewanella denitrificans OS217 4018345 Sden_R0069 tRNA Sden_R0069 NC_007954.1 2188795 2188870 D tRNA-Asn 2188795..2188870 Shewanella denitrificans OS217 4018346 Sden_R0070 tRNA Sden_R0070 NC_007954.1 2188927 2189002 D tRNA-Asn 2188927..2189002 Shewanella denitrificans OS217 4018347 Sden_R0071 tRNA Sden_R0071 NC_007954.1 2189029 2189104 D tRNA-Asn 2189029..2189104 Shewanella denitrificans OS217 4018348 Sden_R0072 tRNA Sden_R0072 NC_007954.1 2189160 2189235 D tRNA-Asn 2189160..2189235 Shewanella denitrificans OS217 4018349 Sden_R0073 tRNA Sden_R0073 NC_007954.1 2243584 2243671 R tRNA-Ser complement(2243584..2243671) Shewanella denitrificans OS217 4018398 Sden_R0074 tRNA Sden_R0074 NC_007954.1 2388865 2388949 D tRNA-Tyr 2388865..2388949 Shewanella denitrificans OS217 4018502 Sden_R0075 tRNA Sden_R0075 NC_007954.1 2389041 2389125 D tRNA-Tyr 2389041..2389125 Shewanella denitrificans OS217 4018503 Sden_R0076 tRNA Sden_R0076 NC_007954.1 2389202 2389286 D tRNA-Tyr 2389202..2389286 Shewanella denitrificans OS217 4018504 Sden_R0078 tRNA Sden_R0078 NC_007954.1 2768128 2768204 D tRNA-Pro 2768128..2768204 Shewanella denitrificans OS217 4018831 Sden_R0079 tRNA Sden_R0079 NC_007954.1 2821170 2821246 D tRNA-Met 2821170..2821246 Shewanella denitrificans OS217 4018864 Sden_R0080 tRNA Sden_R0080 NC_007954.1 2821332 2821408 D tRNA-Met 2821332..2821408 Shewanella denitrificans OS217 4018865 Sden_R0081 tRNA Sden_R0081 NC_007954.1 2821455 2821531 D tRNA-Met 2821455..2821531 Shewanella denitrificans OS217 4018866 Sden_R0082 tRNA Sden_R0082 NC_007954.1 2821591 2821667 D tRNA-Met 2821591..2821667 Shewanella denitrificans OS217 4018867 Sden_R0084 tRNA Sden_R0084 NC_007954.1 2938035 2938125 R tRNA-Ser complement(2938035..2938125) Shewanella denitrificans OS217 4018963 Sden_R0085 tRNA Sden_R0085 NC_007954.1 2977435 2977510 R tRNA-His complement(2977435..2977510) Shewanella denitrificans OS217 4018997 Sden_R0086 tRNA Sden_R0086 NC_007954.1 2977520 2977596 R tRNA-Arg complement(2977520..2977596) Shewanella denitrificans OS217 4018998 Sden_R0087 tRNA Sden_R0087 NC_007954.1 2977725 2977801 R tRNA-Pro complement(2977725..2977801) Shewanella denitrificans OS217 4018999 Sden_R0088 tRNA Sden_R0088 NC_007954.1 3026243 3026318 R tRNA-Val complement(3026243..3026318) Shewanella denitrificans OS217 4019036 Sden_R0089 tRNA Sden_R0089 NC_007954.1 3026359 3026434 R tRNA-Val complement(3026359..3026434) Shewanella denitrificans OS217 4019037 Sden_R0090 tRNA Sden_R0090 NC_007954.1 3026471 3026546 R tRNA-Val complement(3026471..3026546) Shewanella denitrificans OS217 4019038 Sden_R0091 tRNA Sden_R0091 NC_007954.1 3026588 3026663 R tRNA-Val complement(3026588..3026663) Shewanella denitrificans OS217 4019039 Sden_R0092 tRNA Sden_R0092 NC_007954.1 3026695 3026770 R tRNA-Val complement(3026695..3026770) Shewanella denitrificans OS217 4019040 Sden_R0093 tRNA Sden_R0093 NC_007954.1 3026812 3026887 R tRNA-Val complement(3026812..3026887) Shewanella denitrificans OS217 4019041 Sden_R0094 tRNA Sden_R0094 NC_007954.1 3028742 3028817 D tRNA-Ala 3028742..3028817 Shewanella denitrificans OS217 4019043 Sden_R0095 tRNA Sden_R0095 NC_007954.1 3029286 3029361 D tRNA-Glu 3029286..3029361 Shewanella denitrificans OS217 4019044 Sden_R0096 tRNA Sden_R0096 NC_007954.1 3029400 3029475 D tRNA-Ala 3029400..3029475 Shewanella denitrificans OS217 4019045 Sden_R0097 tRNA Sden_R0097 NC_007954.1 3029754 3029829 D tRNA-Glu 3029754..3029829 Shewanella denitrificans OS217 4019046 Sden_R0098 tRNA Sden_R0098 NC_007954.1 3030150 3030225 D tRNA-Glu 3030150..3030225 Shewanella denitrificans OS217 4019047 Sden_R0099 tRNA Sden_R0099 NC_007954.1 3030551 3030626 D tRNA-Glu 3030551..3030626 Shewanella denitrificans OS217 4019048 Sden_R0100 tRNA Sden_R0100 NC_007954.1 3030947 3031022 D tRNA-Glu 3030947..3031022 Shewanella denitrificans OS217 4019049 Sden_R0101 tRNA Sden_R0101 NC_007954.1 3031156 3031231 D tRNA-Glu 3031156..3031231 Shewanella denitrificans OS217 4019050 Sden_R0102 tRNA Sden_R0102 NC_007954.1 3232507 3232582 D tRNA-Phe 3232507..3232582 Shewanella denitrificans OS217 4019217 Sden_R0103 tRNA Sden_R0103 NC_007954.1 3232590 3232665 D tRNA-Thr 3232590..3232665 Shewanella denitrificans OS217 4019218 Sden_R0104 tRNA Sden_R0104 NC_007954.1 3384708 3384784 D tRNA-Met 3384708..3384784 Shewanella denitrificans OS217 4019354 Sden_R0108 tRNA Sden_R0108 NC_007954.1 3421796 3421871 D tRNA-Phe 3421796..3421871 Shewanella denitrificans OS217 4019388 Sden_R0109 tRNA Sden_R0109 NC_007954.1 3421925 3422011 D tRNA-Leu 3421925..3422011 Shewanella denitrificans OS217 4019389 Sden_R0110 tRNA Sden_R0110 NC_007954.1 3649114 3649190 R tRNA-Trp complement(3649114..3649190) Shewanella denitrificans OS217 4019563 Sden_R0111 tRNA Sden_R0111 NC_007954.1 3846313 3846388 R tRNA-Gly complement(3846313..3846388) Shewanella denitrificans OS217 4019738 Sden_R0112 tRNA Sden_R0112 NC_007954.1 3846639 3846714 R tRNA-Gly complement(3846639..3846714) Shewanella denitrificans OS217 4019739 Sden_R0113 tRNA Sden_R0113 NC_007954.1 3846958 3847033 R tRNA-Gly complement(3846958..3847033) Shewanella denitrificans OS217 4019740 Sden_R0114 tRNA Sden_R0114 NC_007954.1 4119466 4119542 R tRNA-Asp complement(4119466..4119542) Shewanella denitrificans OS217 4019994 Sden_R0117 tRNA Sden_R0117 NC_007954.1 4123334 4123409 R tRNA-Ala complement(4123334..4123409) Shewanella denitrificans OS217 4019997 Sden_R0118 tRNA Sden_R0118 NC_007954.1 4123547 4123623 R tRNA-Ile complement(4123547..4123623) Shewanella denitrificans OS217 4019998 Sden_R0123 tRNA Sden_R0123 NC_007954.1 4439245 4439335 R tRNA-Asp complement(4439245..4439335) Shewanella denitrificans OS217 4020261 Sden_R0124 tRNA Sden_R0124 NC_007954.1 4439396 4439472 R tRNA-Asp complement(4439396..4439472) Shewanella denitrificans OS217 4020262 Sden_R0001 rRNA Sden_R0001 NC_007954.1 42596 44130 D 16S ribosomal RNA 42596..44130 Shewanella denitrificans OS217 4017903 Sden_R0002 rRNA Sden_R0002 NC_007954.1 44667 47571 D 23S ribosomal RNA 44667..47571 Shewanella denitrificans OS217 4017904 Sden_R0003 rRNA Sden_R0003 NC_007954.1 47825 47940 D 5S ribosomal RNA 47825..47940 Shewanella denitrificans OS217 4017235 Sden_R0007 rRNA Sden_R0007 NC_007954.1 260843 262377 D 16S ribosomal RNA 260843..262377 Shewanella denitrificans OS217 4017954 Sden_R0010 rRNA Sden_R0010 NC_007954.1 263308 266212 D 23S ribosomal RNA 263308..266212 Shewanella denitrificans OS217 4017957 Sden_R0011 rRNA Sden_R0011 NC_007954.1 266395 266510 D 5S ribosomal RNA 266395..266510 Shewanella denitrificans OS217 4017958 Sden_R0013 rRNA Sden_R0013 NC_007954.1 266682 266797 D 5S ribosomal RNA 266682..266797 Shewanella denitrificans OS217 4017980 Sden_R0015 rRNA Sden_R0015 NC_007954.1 408546 410080 D 16S ribosomal RNA 408546..410080 Shewanella denitrificans OS217 4016686 Sden_R0016 rRNA Sden_R0016 NC_007954.1 410634 413538 D 23S ribosomal RNA 410634..413538 Shewanella denitrificans OS217 4016687 Sden_R0017 rRNA Sden_R0017 NC_007954.1 413748 413863 D 5S ribosomal RNA 413748..413863 Shewanella denitrificans OS217 4016688 Sden_R0044 rRNA Sden_R0044 NC_007954.1 1607157 1608689 D 16S ribosomal RNA 1607157..1608689 Shewanella denitrificans OS217 4017747 Sden_R0047 rRNA Sden_R0047 NC_007954.1 1609695 1612599 D 23S ribosomal RNA 1609695..1612599 Shewanella denitrificans OS217 4017750 Sden_R0048 rRNA Sden_R0048 NC_007954.1 1612853 1612968 D 5S ribosomal RNA 1612853..1612968 Shewanella denitrificans OS217 4017751 Sden_R0105 rRNA Sden_R0105 NC_007954.1 3408371 3408486 R 5S ribosomal RNA complement(3408371..3408486) Shewanella denitrificans OS217 4019379 Sden_R0106 rRNA Sden_R0106 NC_007954.1 3408740 3411644 R 23S ribosomal RNA complement(3408740..3411644) Shewanella denitrificans OS217 4019380 Sden_R0107 rRNA Sden_R0107 NC_007954.1 3412182 3413716 R 16S ribosomal RNA complement(3412182..3413716) Shewanella denitrificans OS217 4019381 Sden_R0115 rRNA Sden_R0115 NC_007954.1 4119632 4119747 R 5S ribosomal RNA complement(4119632..4119747) Shewanella denitrificans OS217 4019995 Sden_R0116 rRNA Sden_R0116 NC_007954.1 4119931 4122835 R 23S ribosomal RNA complement(4119931..4122835) Shewanella denitrificans OS217 4019996 Sden_R0119 rRNA Sden_R0119 NC_007954.1 4123841 4125373 R 16S ribosomal RNA complement(4123841..4125373) Shewanella denitrificans OS217 4019999 Sden_R0120 rRNA Sden_R0120 NC_007954.1 4273827 4273942 R 5S ribosomal RNA complement(4273827..4273942) Shewanella denitrificans OS217 4020118 Sden_R0121 rRNA Sden_R0121 NC_007954.1 4274152 4277056 R 23S ribosomal RNA complement(4274152..4277056) Shewanella denitrificans OS217 4020119 Sden_R0122 rRNA Sden_R0122 NC_007954.1 4277593 4279127 R 16S ribosomal RNA complement(4277593..4279127) Shewanella denitrificans OS217 4020120 Sden_R0125 rRNA Sden_R0125 NC_007954.1 4439562 4439677 R 5S ribosomal RNA complement(4439562..4439677) Shewanella denitrificans OS217 4020263 Sden_R0126 rRNA Sden_R0126 NC_007954.1 4439861 4442765 R 23S ribosomal RNA complement(4439861..4442765) Shewanella denitrificans OS217 4020264 Sden_R0127 rRNA Sden_R0127 NC_007954.1 4443302 4444836 R 16S ribosomal RNA complement(4443302..4444836) Shewanella denitrificans OS217 4020265