-- dump date 20140620_063718 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_561021.1 91791370 4017793 10..1398 1 NC_007954.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1398 dnaA 4017793 dnaA Shewanella denitrificans OS217 chromosomal replication initiation protein YP_561021.1 10 D 318161 CDS YP_561022.1 91791371 4017794 1418..2518 1 NC_007954.1 DNA polymerase III, beta subunit 2518 4017794 Sden_0002 Shewanella denitrificans OS217 DNA polymerase III, beta subunit YP_561022.1 1418 D 318161 CDS YP_561023.1 91791372 4017795 2617..3699 1 NC_007954.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3699 recF 4017795 recF Shewanella denitrificans OS217 recombination protein F YP_561023.1 2617 D 318161 CDS YP_561024.1 91791373 4017796 3715..6132 1 NC_007954.1 DNA gyrase, B subunit 6132 4017796 Sden_0004 Shewanella denitrificans OS217 DNA gyrase, B subunit YP_561024.1 3715 D 318161 CDS YP_561025.1 91791374 4017797 complement(6236..7441) 1 NC_007954.1 di-haem cytochrome c peroxidase 7441 4017797 Sden_0005 Shewanella denitrificans OS217 di-haem cytochrome c peroxidase YP_561025.1 6236 R 318161 CDS YP_561026.1 91791375 4017798 complement(7441..8154) 1 NC_007954.1 hypothetical protein 8154 4017798 Sden_0006 Shewanella denitrificans OS217 hypothetical protein YP_561026.1 7441 R 318161 CDS YP_561027.1 91791376 4017799 8431..11172 1 NC_007954.1 Na-Ca exchanger/integrin-beta4 11172 4017799 Sden_0007 Shewanella denitrificans OS217 Na-Ca exchanger/integrin-beta4 YP_561027.1 8431 D 318161 CDS YP_561028.1 91791377 4017800 complement(11263..13347) 1 NC_007954.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 13347 glyS 4017800 glyS Shewanella denitrificans OS217 glycyl-tRNA synthetase subunit beta YP_561028.1 11263 R 318161 CDS YP_561029.1 91791378 4017801 complement(13357..14262) 1 NC_007954.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 14262 glyQ 4017801 glyQ Shewanella denitrificans OS217 glycyl-tRNA synthetase subunit alpha YP_561029.1 13357 R 318161 CDS YP_561030.1 91791379 4017802 14373..14936 1 NC_007954.1 DNA-3-methyladenine glycosylase I 14936 4017802 Sden_0010 Shewanella denitrificans OS217 DNA-3-methyladenine glycosylase I YP_561030.1 14373 D 318161 CDS YP_561031.1 91791380 4017803 complement(15084..18281) 1 NC_007954.1 amidohydrolase 18281 4017803 Sden_0011 Shewanella denitrificans OS217 amidohydrolase YP_561031.1 15084 R 318161 CDS YP_561032.1 91791381 4017804 complement(18524..18973) 1 NC_007954.1 MOSC domain-containing protein 18973 4017804 Sden_0012 Shewanella denitrificans OS217 MOSC domain-containing protein YP_561032.1 18524 R 318161 CDS YP_561033.1 91791382 4017805 complement(18976..19221) 1 NC_007954.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 19221 4017805 Sden_0013 Shewanella denitrificans OS217 sulfur transfer protein SirA YP_561033.1 18976 R 318161 CDS YP_561034.1 91791383 4017806 complement(19738..20901) 1 NC_007954.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 20901 fadA 4017806 fadA Shewanella denitrificans OS217 3-ketoacyl-CoA thiolase YP_561034.1 19738 R 318161 CDS YP_561035.2 162210779 4017807 complement(20924..23074) 1 NC_007954.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 23074 fadB 4017807 fadB Shewanella denitrificans OS217 multifunctional fatty acid oxidation complex subunit alpha YP_561035.2 20924 R 318161 CDS YP_561036.1 91791385 4017808 23301..24623 1 NC_007954.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 24623 4017808 Sden_0016 Shewanella denitrificans OS217 proline dipeptidase YP_561036.1 23301 D 318161 CDS YP_561037.1 91791386 4017809 24620..25246 1 NC_007954.1 hypothetical protein 25246 4017809 Sden_0017 Shewanella denitrificans OS217 hypothetical protein YP_561037.1 24620 D 318161 CDS YP_561038.1 91791387 4017810 25312..26769 1 NC_007954.1 K+ transporter Trk 26769 4017810 Sden_0018 Shewanella denitrificans OS217 K+ transporter Trk YP_561038.1 25312 D 318161 CDS YP_561039.1 91791388 4017811 26769..27296 1 NC_007954.1 protoporphyrinogen oxidase 27296 4017811 Sden_0019 Shewanella denitrificans OS217 protoporphyrinogen oxidase YP_561039.1 26769 D 318161 CDS YP_561040.1 91791389 4017812 complement(27301..27606) 1 NC_007954.1 regulatory protein, ArsR 27606 4017812 Sden_0020 Shewanella denitrificans OS217 regulatory protein, ArsR YP_561040.1 27301 R 318161 CDS YP_561041.1 91791390 4017887 complement(27622..29031) 1 NC_007954.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 29031 trkA 4017887 trkA Shewanella denitrificans OS217 potassium transporter peripheral membrane component YP_561041.1 27622 R 318161 CDS YP_561042.1 91791391 4017888 complement(29050..30336) 1 NC_007954.1 sun protein 30336 4017888 Sden_0022 Shewanella denitrificans OS217 sun protein YP_561042.1 29050 R 318161 CDS YP_561043.1 91791392 4017889 complement(30333..31292) 1 NC_007954.1 methionyl-tRNA formyltransferase 31292 4017889 Sden_0023 Shewanella denitrificans OS217 methionyl-tRNA formyltransferase YP_561043.1 30333 R 318161 CDS YP_561044.1 91791393 4017890 complement(31299..31811) 1 NC_007954.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 31811 def 4017890 def Shewanella denitrificans OS217 peptide deformylase YP_561044.1 31299 R 318161 CDS YP_561045.1 91791394 4017891 31937..33046 1 NC_007954.1 peptidoglycan-binding LysM 33046 4017891 Sden_0025 Shewanella denitrificans OS217 peptidoglycan-binding LysM YP_561045.1 31937 D 318161 CDS YP_561046.1 91791395 4017892 33058..34146 1 NC_007954.1 DNA processing protein DprA 34146 4017892 Sden_0026 Shewanella denitrificans OS217 DNA processing protein DprA YP_561046.1 33058 D 318161 CDS YP_561047.1 91791396 4017893 34149..34622 1 NC_007954.1 hypothetical protein 34622 4017893 Sden_0027 Shewanella denitrificans OS217 hypothetical protein YP_561047.1 34149 D 318161 CDS YP_561048.1 91791397 4017894 34705..35268 1 NC_007954.1 DNA topoisomerase I 35268 4017894 Sden_0028 Shewanella denitrificans OS217 DNA topoisomerase I YP_561048.1 34705 D 318161 CDS YP_561049.1 91791398 4017895 35377..35943 1 NC_007954.1 SUA5/yciO/yrdC-like protein 35943 4017895 Sden_0029 Shewanella denitrificans OS217 SUA5/yciO/yrdC-like protein YP_561049.1 35377 D 318161 CDS YP_561050.1 91791399 4017896 35954..36871 1 NC_007954.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 36871 4017896 Sden_0030 Shewanella denitrificans OS217 coproporphyrinogen III oxidase YP_561050.1 35954 D 318161 CDS YP_561051.1 91791400 4017897 complement(36879..37349) 1 NC_007954.1 globin 37349 4017897 Sden_0031 Shewanella denitrificans OS217 globin YP_561051.1 36879 R 318161 CDS YP_561052.1 91791401 4017898 37525..38919 1 NC_007954.1 amidohydrolase 38919 4017898 Sden_0032 Shewanella denitrificans OS217 amidohydrolase YP_561052.1 37525 D 318161 CDS YP_561053.1 91791402 4017899 38937..40229 1 NC_007954.1 amidohydrolase 40229 4017899 Sden_0033 Shewanella denitrificans OS217 amidohydrolase YP_561053.1 38937 D 318161 CDS YP_561054.1 91791403 4017900 40277..41098 1 NC_007954.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 41098 aroE 4017900 aroE Shewanella denitrificans OS217 shikimate 5-dehydrogenase YP_561054.1 40277 D 318161 CDS YP_561055.1 91791404 4017901 41134..41400 1 NC_007954.1 hypothetical protein 41400 4017901 Sden_0035 Shewanella denitrificans OS217 hypothetical protein YP_561055.1 41134 D 318161 CDS YP_561056.1 91791405 4017902 complement(41465..42019) 1 NC_007954.1 carbonic anhydrase 42019 4017902 Sden_0036 Shewanella denitrificans OS217 carbonic anhydrase YP_561056.1 41465 R 318161 CDS YP_561057.1 91791406 4017236 48640..49581 1 NC_007954.1 integrase catalytic subunit 49581 4017236 Sden_0037 Shewanella denitrificans OS217 integrase catalytic subunit YP_561057.1 48640 D 318161 CDS YP_561058.1 91791407 4017237 complement(50191..51132) 1 NC_007954.1 integrase catalytic subunit 51132 4017237 Sden_0038 Shewanella denitrificans OS217 integrase catalytic subunit YP_561058.1 50191 R 318161 CDS YP_561059.1 91791408 4017238 51134..53167 1 NC_007954.1 hypothetical protein 53167 4017238 Sden_0039 Shewanella denitrificans OS217 hypothetical protein YP_561059.1 51134 D 318161 CDS YP_561060.1 91791409 4017239 53406..54374 1 NC_007954.1 hypothetical protein 54374 4017239 Sden_0040 Shewanella denitrificans OS217 hypothetical protein YP_561060.1 53406 D 318161 CDS YP_561061.1 91791410 4017240 54704..54952 1 NC_007954.1 export protein FliQ 54952 4017240 Sden_0041 Shewanella denitrificans OS217 export protein FliQ YP_561061.1 54704 D 318161 CDS YP_561062.1 91791411 4017241 54915..55700 1 NC_007954.1 type III secretion system inner membrane R protein 55700 4017241 Sden_0042 Shewanella denitrificans OS217 type III secretion system inner membrane R protein YP_561062.1 54915 D 318161 CDS YP_561063.1 91791412 4017242 55703..56761 1 NC_007954.1 type III secretion exporter 56761 4017242 Sden_0043 Shewanella denitrificans OS217 type III secretion exporter YP_561063.1 55703 D 318161 CDS YP_561064.1 91791413 4017243 56758..58800 1 NC_007954.1 type III secretion FHIPEP 58800 4017243 Sden_0044 Shewanella denitrificans OS217 type III secretion FHIPEP YP_561064.1 56758 D 318161 CDS YP_561065.1 91791414 4017244 58803..59450 1 NC_007954.1 flagellar basal body rod protein-like protein 59450 4017244 Sden_0045 Shewanella denitrificans OS217 flagellar basal body rod protein-like protein YP_561065.1 58803 D 318161 CDS YP_561066.1 91791415 4017245 59453..60214 1 NC_007954.1 hypothetical protein 60214 4017245 Sden_0046 Shewanella denitrificans OS217 hypothetical protein YP_561066.1 59453 D 318161 CDS YP_561067.1 91791416 4017246 60215..61072 1 NC_007954.1 flageller protein FlgA 61072 4017246 Sden_0047 Shewanella denitrificans OS217 flageller protein FlgA YP_561067.1 60215 D 318161 CDS YP_561068.1 91791417 4017247 61062..61625 1 NC_007954.1 flagellar L-ring protein 61625 4017247 Sden_0048 Shewanella denitrificans OS217 flagellar L-ring protein YP_561068.1 61062 D 318161 CDS YP_561069.1 91791418 4017248 61625..62740 1 NC_007954.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 62740 flgI 4017248 flgI Shewanella denitrificans OS217 flagellar basal body P-ring protein YP_561069.1 61625 D 318161 CDS YP_561070.1 91791419 4017249 62751..63086 1 NC_007954.1 hypothetical protein 63086 4017249 Sden_0050 Shewanella denitrificans OS217 hypothetical protein YP_561070.1 62751 D 318161 CDS YP_561071.1 91791420 4017250 63086..63469 1 NC_007954.1 flagellar basal body rod protein FlgC 63469 4017250 Sden_0051 Shewanella denitrificans OS217 flagellar basal body rod protein FlgC YP_561071.1 63086 D 318161 CDS YP_561072.1 91791421 4017251 63472..63762 1 NC_007954.1 flagellar hook-basal body complex protein (FliE) 63762 4017251 Sden_0052 Shewanella denitrificans OS217 flagellar hook-basal body complex protein (FliE) YP_561072.1 63472 D 318161 CDS YP_561073.1 91791422 4017252 63778..65097 1 NC_007954.1 secretory protein YscJ/FliF 65097 4017252 Sden_0053 Shewanella denitrificans OS217 secretory protein YscJ/FliF YP_561073.1 63778 D 318161 CDS YP_561074.1 91791423 4017177 65090..65404 1 NC_007954.1 hypothetical protein 65404 4017177 Sden_0054 Shewanella denitrificans OS217 hypothetical protein YP_561074.1 65090 D 318161 CDS YP_561075.1 91791424 4017178 65404..66117 1 NC_007954.1 hypothetical protein 66117 4017178 Sden_0055 Shewanella denitrificans OS217 hypothetical protein YP_561075.1 65404 D 318161 CDS YP_561076.1 91791425 4017179 66110..67420 1 NC_007954.1 ATPase FliI/YscN 67420 4017179 Sden_0056 Shewanella denitrificans OS217 ATPase FliI/YscN YP_561076.1 66110 D 318161 CDS YP_561077.1 91791426 4017180 67427..67855 1 NC_007954.1 hypothetical protein 67855 4017180 Sden_0057 Shewanella denitrificans OS217 hypothetical protein YP_561077.1 67427 D 318161 CDS YP_561078.1 91791427 4017181 67848..68642 1 NC_007954.1 hypothetical protein 68642 4017181 Sden_0058 Shewanella denitrificans OS217 hypothetical protein YP_561078.1 67848 D 318161 CDS YP_561079.1 91791428 4017182 68643..69050 1 NC_007954.1 flagellar hook capping protein 69050 4017182 Sden_0059 Shewanella denitrificans OS217 flagellar hook capping protein YP_561079.1 68643 D 318161 CDS YP_561080.1 91791429 4017183 69065..70243 1 NC_007954.1 hypothetical protein 70243 4017183 Sden_0060 Shewanella denitrificans OS217 hypothetical protein YP_561080.1 69065 D 318161 CDS YP_561081.1 91791430 4017184 70243..70905 1 NC_007954.1 hypothetical protein 70905 4017184 Sden_0061 Shewanella denitrificans OS217 hypothetical protein YP_561081.1 70243 D 318161 CDS YP_561082.1 91791431 4017185 70914..71225 1 NC_007954.1 surface presentation of antigens (SPOA) protein 71225 4017185 Sden_0062 Shewanella denitrificans OS217 surface presentation of antigens (SPOA) protein YP_561082.1 70914 D 318161 CDS YP_561083.1 91791432 4017186 71500..72189 1 NC_007954.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 72189 fliP 4017186 fliP Shewanella denitrificans OS217 flagellar biosynthesis protein FliP YP_561083.1 71500 D 318161 CDS YP_561084.1 91791433 4017187 72203..72757 1 NC_007954.1 hypothetical protein 72757 4017187 Sden_0064 Shewanella denitrificans OS217 hypothetical protein YP_561084.1 72203 D 318161 CDS YP_561085.1 91791434 4017188 complement(72832..73098) 1 NC_007954.1 hypothetical protein 73098 4017188 Sden_0065 Shewanella denitrificans OS217 hypothetical protein YP_561085.1 72832 R 318161 CDS YP_561086.1 91791435 4017189 complement(73136..74272) 1 NC_007954.1 transport protein 74272 4017189 Sden_0066 Shewanella denitrificans OS217 transport protein YP_561086.1 73136 R 318161 CDS YP_561087.1 91791436 4017190 complement(74272..75006) 1 NC_007954.1 ABC transporter related 75006 4017190 Sden_0067 Shewanella denitrificans OS217 ABC transporter related YP_561087.1 74272 R 318161 CDS YP_561088.1 91791437 4017191 complement(75009..76574) 1 NC_007954.1 peptidase S33, prolyl aminopeptidase 76574 4017191 Sden_0068 Shewanella denitrificans OS217 peptidase S33, prolyl aminopeptidase YP_561088.1 75009 R 318161 CDS YP_561089.1 91791438 4017192 76662..77051 1 NC_007954.1 regulatory protein GntR, HTH 77051 4017192 Sden_0069 Shewanella denitrificans OS217 regulatory protein GntR, HTH YP_561089.1 76662 D 318161 CDS YP_561090.1 91791439 4017193 77058..77900 1 NC_007954.1 ABC transporter related 77900 4017193 Sden_0070 Shewanella denitrificans OS217 ABC transporter related YP_561090.1 77058 D 318161 CDS YP_561091.1 91791440 4017194 77897..79213 1 NC_007954.1 hypothetical protein 79213 4017194 Sden_0071 Shewanella denitrificans OS217 hypothetical protein YP_561091.1 77897 D 318161 CDS YP_561092.1 91791441 4017195 79325..81118 1 NC_007954.1 AMP-dependent synthetase and ligase 81118 4017195 Sden_0072 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_561092.1 79325 D 318161 CDS YP_561093.1 91791442 4017196 81233..81640 1 NC_007954.1 thioesterase superfamily protein 81640 4017196 Sden_0073 Shewanella denitrificans OS217 thioesterase superfamily protein YP_561093.1 81233 D 318161 CDS YP_561094.1 91791443 4017122 complement(81743..82168) 1 NC_007954.1 thioesterase superfamily protein 82168 4017122 Sden_0074 Shewanella denitrificans OS217 thioesterase superfamily protein YP_561094.1 81743 R 318161 CDS YP_561095.1 91791444 4017123 82387..83451 1 NC_007954.1 hypothetical protein 83451 4017123 Sden_0075 Shewanella denitrificans OS217 hypothetical protein YP_561095.1 82387 D 318161 CDS YP_561096.1 91791445 4017124 complement(83458..86283) 1 NC_007954.1 GGDEF domain-containing protein 86283 4017124 Sden_0076 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561096.1 83458 R 318161 CDS YP_561097.1 91791446 4017125 complement(86552..87229) 1 NC_007954.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 87229 4017125 Sden_0077 Shewanella denitrificans OS217 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_561097.1 86552 R 318161 CDS YP_561098.1 91791447 4017126 87451..87894 1 NC_007954.1 CMP/dCMP deaminase, zinc-binding 87894 4017126 Sden_0078 Shewanella denitrificans OS217 CMP/dCMP deaminase, zinc-binding YP_561098.1 87451 D 318161 CDS YP_561099.1 91791448 4017127 87961..88437 1 NC_007954.1 hypothetical protein 88437 4017127 Sden_0079 Shewanella denitrificans OS217 hypothetical protein YP_561099.1 87961 D 318161 CDS YP_561100.1 91791449 4017128 88680..89165 1 NC_007954.1 hypothetical protein 89165 4017128 Sden_0080 Shewanella denitrificans OS217 hypothetical protein YP_561100.1 88680 D 318161 CDS YP_561101.1 91791450 4017129 complement(89268..90512) 1 NC_007954.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 90512 4017129 Sden_0081 Shewanella denitrificans OS217 imidazolonepropionase YP_561101.1 89268 R 318161 CDS YP_561102.1 91791451 4017130 90669..91376 1 NC_007954.1 histidine utilization repressor 91376 4017130 Sden_0082 Shewanella denitrificans OS217 histidine utilization repressor YP_561102.1 90669 D 318161 CDS YP_561103.1 91791452 4017131 91505..93199 1 NC_007954.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 93199 4017131 Sden_0083 Shewanella denitrificans OS217 urocanate hydratase YP_561103.1 91505 D 318161 CDS YP_561104.1 91791453 4017132 93202..94734 1 NC_007954.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 94734 4017132 Sden_0084 Shewanella denitrificans OS217 histidine ammonia-lyase YP_561104.1 93202 D 318161 CDS YP_561105.1 91791454 4017133 complement(94806..95330) 1 NC_007954.1 hypothetical protein 95330 4017133 Sden_0085 Shewanella denitrificans OS217 hypothetical protein YP_561105.1 94806 R 318161 CDS YP_561106.1 91791455 4017134 95589..96869 1 NC_007954.1 MscS mechanosensitive ion channel 96869 4017134 Sden_0086 Shewanella denitrificans OS217 MscS mechanosensitive ion channel YP_561106.1 95589 D 318161 CDS YP_561107.1 91791456 4017135 complement(97393..97764) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 97764 4017135 Sden_0087 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_561107.1 97393 R 318161 CDS YP_561108.1 91791457 4017136 complement(99618..100172) 1 NC_007954.1 phospholipid/glycerol acyltransferase 100172 4017136 Sden_0088 Shewanella denitrificans OS217 phospholipid/glycerol acyltransferase YP_561108.1 99618 R 318161 CDS YP_561109.1 91791458 4017137 100347..100769 1 NC_007954.1 hypothetical protein 100769 4017137 Sden_0089 Shewanella denitrificans OS217 hypothetical protein YP_561109.1 100347 D 318161 CDS YP_561110.1 91791459 4017138 complement(100744..101520) 1 NC_007954.1 hypothetical protein 101520 4017138 Sden_0090 Shewanella denitrificans OS217 hypothetical protein YP_561110.1 100744 R 318161 CDS YP_561111.1 91791460 4017139 complement(101563..103224) 1 NC_007954.1 hypothetical protein 103224 4017139 Sden_0091 Shewanella denitrificans OS217 hypothetical protein YP_561111.1 101563 R 318161 CDS YP_561112.1 91791461 4017140 103529..104122 1 NC_007954.1 multiple antibiotic resistance (MarC)-related proteins 104122 4017140 Sden_0092 Shewanella denitrificans OS217 multiple antibiotic resistance (MarC)-related proteins YP_561112.1 103529 D 318161 CDS YP_561113.1 91791462 4017157 104304..104666 1 NC_007954.1 hypothetical protein 104666 4017157 Sden_0093 Shewanella denitrificans OS217 hypothetical protein YP_561113.1 104304 D 318161 CDS YP_561114.1 91791463 4017158 104720..107317 1 NC_007954.1 peptidase M6, immune inhibitor A 107317 4017158 Sden_0094 Shewanella denitrificans OS217 peptidase M6, immune inhibitor A YP_561114.1 104720 D 318161 CDS YP_561115.1 91791464 4017159 complement(107359..107928) 1 NC_007954.1 chorismate lyase 107928 4017159 Sden_0095 Shewanella denitrificans OS217 chorismate lyase YP_561115.1 107359 R 318161 CDS YP_561116.1 91791465 4017160 108069..108470 1 NC_007954.1 flagellar basal body-associated protein FliL-like protein 108470 4017160 Sden_0096 Shewanella denitrificans OS217 flagellar basal body-associated protein FliL-like protein YP_561116.1 108069 D 318161 CDS YP_561117.1 91791466 4017161 108476..109558 1 NC_007954.1 SAM-dependent methyltransferase 109558 4017161 Sden_0097 Shewanella denitrificans OS217 SAM-dependent methyltransferase YP_561117.1 108476 D 318161 CDS YP_561118.1 91791467 4017162 109632..110480 1 NC_007954.1 PfkB 110480 4017162 Sden_0098 Shewanella denitrificans OS217 PfkB YP_561118.1 109632 D 318161 CDS YP_561119.1 91791468 4017163 complement(110599..112518) 1 NC_007954.1 chemotaxis sensory transducer 112518 4017163 Sden_0099 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_561119.1 110599 R 318161 CDS YP_561120.1 91791469 4017164 complement(112745..114391) 1 NC_007954.1 electron-transferring-flavoprotein dehydrogenase 114391 4017164 Sden_0100 Shewanella denitrificans OS217 electron-transferring-flavoprotein dehydrogenase YP_561120.1 112745 R 318161 CDS YP_561121.1 91791470 4017165 114686..115699 1 NC_007954.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 115699 moaA 4017165 moaA Shewanella denitrificans OS217 molybdenum cofactor biosynthesis protein A YP_561121.1 114686 D 318161 CDS YP_561122.1 91791471 4017166 115800..116279 1 NC_007954.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 116279 moaC 4017166 moaC Shewanella denitrificans OS217 molybdenum cofactor biosynthesis protein MoaC YP_561122.1 115800 D 318161 CDS YP_561123.1 91791472 4017167 116301..116552 1 NC_007954.1 molybdopterin converting factor, subunit 1 116552 4017167 Sden_0103 Shewanella denitrificans OS217 molybdopterin converting factor, subunit 1 YP_561123.1 116301 D 318161 CDS YP_561124.1 91791473 4017168 116555..117025 1 NC_007954.1 molybdopterin biosynthesis MoaE 117025 4017168 Sden_0104 Shewanella denitrificans OS217 molybdopterin biosynthesis MoaE YP_561124.1 116555 D 318161 CDS YP_561125.1 91791474 4017169 117025..117906 1 NC_007954.1 molybdenum ABC transporter, periplasmic molybdate-binding protein 117906 4017169 Sden_0105 Shewanella denitrificans OS217 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_561125.1 117025 D 318161 CDS YP_561126.1 91791475 4017170 117906..118577 1 NC_007954.1 molybdate ABC transporter permease 118577 4017170 Sden_0106 Shewanella denitrificans OS217 molybdate ABC transporter permease YP_561126.1 117906 D 318161 CDS YP_561127.1 91791476 4017171 118567..119694 1 NC_007954.1 ABC transporter related 119694 4017171 Sden_0107 Shewanella denitrificans OS217 ABC transporter related YP_561127.1 118567 D 318161 CDS YP_561128.1 91791477 4017172 119777..120307 1 NC_007954.1 hypothetical protein 120307 4017172 Sden_0108 Shewanella denitrificans OS217 hypothetical protein YP_561128.1 119777 D 318161 CDS YP_561129.1 91791478 4017173 120323..121000 1 NC_007954.1 response regulator receiver 121000 4017173 Sden_0109 Shewanella denitrificans OS217 response regulator receiver YP_561129.1 120323 D 318161 CDS YP_561130.1 91791479 4017174 121059..122306 1 NC_007954.1 ATP-binding region, ATPase-like protein 122306 4017174 Sden_0110 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561130.1 121059 D 318161 CDS YP_561131.1 91791480 4017175 122366..123046 1 NC_007954.1 pseudouridine synthase RluA-like protein 123046 4017175 Sden_0111 Shewanella denitrificans OS217 pseudouridine synthase RluA-like protein YP_561131.1 122366 D 318161 CDS YP_561132.1 91791481 4017176 123178..123360 1 NC_007954.1 hypothetical protein 123360 4017176 Sden_0112 Shewanella denitrificans OS217 hypothetical protein YP_561132.1 123178 D 318161 CDS YP_561133.1 91791482 4017197 complement(123425..124192) 1 NC_007954.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 124192 4017197 Sden_0113 Shewanella denitrificans OS217 molybdopterin biosynthesis protein MoeB YP_561133.1 123425 R 318161 CDS YP_561134.1 91791483 4017198 complement(124244..125491) 1 NC_007954.1 MoeA-likedomain-containing protein 125491 4017198 Sden_0114 Shewanella denitrificans OS217 MoeA-likedomain-containing protein YP_561134.1 124244 R 318161 CDS YP_561135.1 91791484 4017199 125646..125918 1 NC_007954.1 excinuclease ABC subunit C 125918 4017199 Sden_0115 Shewanella denitrificans OS217 excinuclease ABC subunit C YP_561135.1 125646 D 318161 CDS YP_561136.1 91791485 4017200 125905..126948 1 NC_007954.1 hypothetical protein 126948 4017200 Sden_0116 Shewanella denitrificans OS217 hypothetical protein YP_561136.1 125905 D 318161 CDS YP_561137.1 91791486 4017201 complement(127004..128545) 1 NC_007954.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 128545 4017201 Sden_0117 Shewanella denitrificans OS217 phosphoenolpyruvate carboxykinase YP_561137.1 127004 R 318161 CDS YP_561138.1 91791487 4017202 complement(128791..129657) 1 NC_007954.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 129657 hslO 4017202 hslO Shewanella denitrificans OS217 Hsp33-like chaperonin YP_561138.1 128791 R 318161 CDS YP_561139.1 91791488 4017203 complement(129718..130116) 1 NC_007954.1 RNA-binding S4 130116 4017203 Sden_0119 Shewanella denitrificans OS217 RNA-binding S4 YP_561139.1 129718 R 318161 CDS YP_561140.1 91791489 4017204 130359..131270 1 NC_007954.1 type II secretion system protein C 131270 4017204 Sden_0120 Shewanella denitrificans OS217 type II secretion system protein C YP_561140.1 130359 D 318161 CDS YP_561141.1 91791490 4017205 131297..133414 1 NC_007954.1 type II and III secretion system protein 133414 4017205 Sden_0121 Shewanella denitrificans OS217 type II and III secretion system protein YP_561141.1 131297 D 318161 CDS YP_561142.1 91791491 4017206 133422..134966 1 NC_007954.1 type II secretion system protein E 134966 4017206 Sden_0122 Shewanella denitrificans OS217 type II secretion system protein E YP_561142.1 133422 D 318161 CDS YP_561143.1 91791492 4017207 134969..136192 1 NC_007954.1 general secretion pathway protein F 136192 4017207 Sden_0123 Shewanella denitrificans OS217 general secretion pathway protein F YP_561143.1 134969 D 318161 CDS YP_561144.1 91791493 4017208 136274..136708 1 NC_007954.1 general secretion pathway protein G 136708 4017208 Sden_0124 Shewanella denitrificans OS217 general secretion pathway protein G YP_561144.1 136274 D 318161 CDS YP_561145.1 91791494 4017209 136732..137319 1 NC_007954.1 general secretion pathway protein H 137319 4017209 Sden_0125 Shewanella denitrificans OS217 general secretion pathway protein H YP_561145.1 136732 D 318161 CDS YP_561146.1 91791495 4017210 137306..137671 1 NC_007954.1 general secretion pathway protein I 137671 4017210 Sden_0126 Shewanella denitrificans OS217 general secretion pathway protein I YP_561146.1 137306 D 318161 CDS YP_561147.1 91791496 4017211 137655..138410 1 NC_007954.1 general secretion pathway protein J 138410 4017211 Sden_0127 Shewanella denitrificans OS217 general secretion pathway protein J YP_561147.1 137655 D 318161 CDS YP_561148.1 91791497 4017212 138410..139498 1 NC_007954.1 general secretion pathway protein K 139498 4017212 Sden_0128 Shewanella denitrificans OS217 general secretion pathway protein K YP_561148.1 138410 D 318161 CDS YP_561149.1 91791498 4017213 139544..140746 1 NC_007954.1 general secretion pathway L 140746 4017213 Sden_0129 Shewanella denitrificans OS217 general secretion pathway L YP_561149.1 139544 D 318161 CDS YP_561150.1 91791499 4017214 140748..141224 1 NC_007954.1 general secretion pathway M protein 141224 4017214 Sden_0130 Shewanella denitrificans OS217 general secretion pathway M protein YP_561150.1 140748 D 318161 CDS YP_561151.1 91791500 4017215 141236..141997 1 NC_007954.1 type II secretion system protein N 141997 4017215 Sden_0131 Shewanella denitrificans OS217 type II secretion system protein N YP_561151.1 141236 D 318161 CDS YP_561152.1 91791501 4020379 142525..146793 1 NC_007954.1 YD repeat-containing protein 146793 4020379 Sden_0132 Shewanella denitrificans OS217 YD repeat-containing protein YP_561152.1 142525 D 318161 CDS YP_561153.1 91791502 4020380 146783..148345 1 NC_007954.1 hypothetical protein 148345 4020380 Sden_0133 Shewanella denitrificans OS217 hypothetical protein YP_561153.1 146783 D 318161 CDS YP_561154.1 91791503 4020381 149091..149201 1 NC_007954.1 hypothetical protein 149201 4020381 Sden_0134 Shewanella denitrificans OS217 hypothetical protein YP_561154.1 149091 D 318161 CDS YP_561155.1 91791504 4020382 149292..150269 1 NC_007954.1 hypothetical protein 150269 4020382 Sden_0135 Shewanella denitrificans OS217 hypothetical protein YP_561155.1 149292 D 318161 CDS YP_561156.1 91791505 4020383 150507..151472 1 NC_007954.1 hypothetical protein 151472 4020383 Sden_0136 Shewanella denitrificans OS217 hypothetical protein YP_561156.1 150507 D 318161 CDS YP_561157.1 91791506 4020384 153873..161366 1 NC_007954.1 Integrins alpha chain 161366 4020384 Sden_0137 Shewanella denitrificans OS217 Integrins alpha chain YP_561157.1 153873 D 318161 CDS YP_561158.1 91791507 4020385 161368..161853 1 NC_007954.1 hypothetical protein 161853 4020385 Sden_0138 Shewanella denitrificans OS217 hypothetical protein YP_561158.1 161368 D 318161 CDS YP_561159.1 91791508 4020386 162751..163077 1 NC_007954.1 hypothetical protein 163077 4020386 Sden_0139 Shewanella denitrificans OS217 hypothetical protein YP_561159.1 162751 D 318161 CDS YP_561160.1 91791509 4020387 163270..163581 1 NC_007954.1 hypothetical protein 163581 4020387 Sden_0140 Shewanella denitrificans OS217 hypothetical protein YP_561160.1 163270 D 318161 CDS YP_561161.1 91791510 4020388 163641..164006 1 NC_007954.1 hypothetical protein 164006 4020388 Sden_0141 Shewanella denitrificans OS217 hypothetical protein YP_561161.1 163641 D 318161 CDS YP_561162.1 91791511 4020389 164021..164746 1 NC_007954.1 hypothetical protein 164746 4020389 Sden_0142 Shewanella denitrificans OS217 hypothetical protein YP_561162.1 164021 D 318161 CDS YP_561163.1 91791512 4020390 164781..164996 1 NC_007954.1 hypothetical protein 164996 4020390 Sden_0143 Shewanella denitrificans OS217 hypothetical protein YP_561163.1 164781 D 318161 CDS YP_561164.1 91791513 4020391 165174..165551 1 NC_007954.1 hypothetical protein 165551 4020391 Sden_0144 Shewanella denitrificans OS217 hypothetical protein YP_561164.1 165174 D 318161 CDS YP_561165.1 91791514 4020392 167067..167405 1 NC_007954.1 hypothetical protein 167405 4020392 Sden_0145 Shewanella denitrificans OS217 hypothetical protein YP_561165.1 167067 D 318161 CDS YP_561166.1 91791515 4020393 167447..167779 1 NC_007954.1 hypothetical protein 167779 4020393 Sden_0146 Shewanella denitrificans OS217 hypothetical protein YP_561166.1 167447 D 318161 CDS YP_561167.1 91791516 4020394 complement(167832..168176) 1 NC_007954.1 hypothetical protein 168176 4020394 Sden_0147 Shewanella denitrificans OS217 hypothetical protein YP_561167.1 167832 R 318161 CDS YP_561168.1 91791517 4020395 168388..168732 1 NC_007954.1 hypothetical protein 168732 4020395 Sden_0148 Shewanella denitrificans OS217 hypothetical protein YP_561168.1 168388 D 318161 CDS YP_561169.1 91791518 4020396 169214..170710 1 NC_007954.1 Sodium/proline symporter 170710 4020396 Sden_0149 Shewanella denitrificans OS217 Sodium/proline symporter YP_561169.1 169214 D 318161 CDS YP_561170.1 91791519 4020397 170727..171836 1 NC_007954.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 171836 4020397 Sden_0150 Shewanella denitrificans OS217 gamma-glutamyl kinase YP_561170.1 170727 D 318161 CDS YP_561171.1 91791520 4020398 171849..173111 1 NC_007954.1 gamma-glutamyl phosphate reductase 173111 4020398 Sden_0151 Shewanella denitrificans OS217 gamma-glutamyl phosphate reductase YP_561171.1 171849 D 318161 CDS YP_561172.1 91791521 4017813 173414..174934 1 NC_007954.1 PKD 174934 4017813 Sden_0152 Shewanella denitrificans OS217 PKD YP_561172.1 173414 D 318161 CDS YP_561173.1 91791522 4017814 175058..176086 1 NC_007954.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 176086 murB 4017814 murB Shewanella denitrificans OS217 UDP-N-acetylenolpyruvoylglucosamine reductase YP_561173.1 175058 D 318161 CDS YP_561174.1 91791523 4017815 176083..177054 1 NC_007954.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 177054 4017815 Sden_0154 Shewanella denitrificans OS217 biotin--protein ligase YP_561174.1 176083 D 318161 CDS YP_561175.1 91791524 4017816 complement(177071..177616) 1 NC_007954.1 hypothetical protein 177616 4017816 Sden_0155 Shewanella denitrificans OS217 hypothetical protein YP_561175.1 177071 R 318161 CDS YP_561176.1 91791525 4017817 complement(177642..178586) 1 NC_007954.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 178586 4017817 Sden_0156 Shewanella denitrificans OS217 pantothenate kinase YP_561176.1 177642 R 318161 CDS YP_561177.1 91791526 4017821 179455..179826 1 NC_007954.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 179826 secE 4017821 secE Shewanella denitrificans OS217 preprotein translocase subunit SecE YP_561177.1 179455 D 318161 CDS YP_561178.1 91791527 4017822 179836..180387 1 NC_007954.1 transcription termination/antitermination factor NusG 180387 4017822 Sden_0158 Shewanella denitrificans OS217 transcription termination/antitermination factor NusG YP_561178.1 179836 D 318161 CDS YP_561179.1 91791528 4017823 180516..180944 1 NC_007954.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 180944 rplK 4017823 rplK Shewanella denitrificans OS217 50S ribosomal protein L11 YP_561179.1 180516 D 318161 CDS YP_561180.1 91791529 4017824 180949..181650 1 NC_007954.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 181650 rplA 4017824 rplA Shewanella denitrificans OS217 50S ribosomal protein L1 YP_561180.1 180949 D 318161 CDS YP_561181.1 91791530 4017825 181935..182435 1 NC_007954.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 182435 rplJ 4017825 rplJ Shewanella denitrificans OS217 50S ribosomal protein L10 YP_561181.1 181935 D 318161 CDS YP_561182.1 91791531 4017826 182490..182858 1 NC_007954.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 182858 rplL 4017826 rplL Shewanella denitrificans OS217 50S ribosomal protein L7/L12 YP_561182.1 182490 D 318161 CDS YP_561183.1 91791532 4017827 183091..187122 1 NC_007954.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 187122 rpoB 4017827 rpoB Shewanella denitrificans OS217 DNA-directed RNA polymerase subunit beta YP_561183.1 183091 D 318161 CDS YP_561184.1 91791533 4017828 187204..191436 1 NC_007954.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 191436 4017828 Sden_0164 Shewanella denitrificans OS217 DNA-directed RNA polymerase subunit beta' YP_561184.1 187204 D 318161 CDS YP_561185.1 91791534 4017847 191615..191989 1 NC_007954.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 191989 rpsL 4017847 rpsL Shewanella denitrificans OS217 30S ribosomal protein S12 YP_561185.1 191615 D 318161 CDS YP_561186.1 91791535 4017848 192070..192540 1 NC_007954.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 192540 4017848 Sden_0166 Shewanella denitrificans OS217 30S ribosomal protein S7 YP_561186.1 192070 D 318161 CDS YP_561187.1 91791536 4017849 192619..194715 1 NC_007954.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 194715 4017849 Sden_0167 Shewanella denitrificans OS217 elongation factor G YP_561187.1 192619 D 318161 CDS YP_561188.1 91791537 4017850 194785..195969 1 NC_007954.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 195969 4017850 Sden_0168 Shewanella denitrificans OS217 elongation factor Tu YP_561188.1 194785 D 318161 CDS YP_561189.1 91791538 4017851 196309..196620 1 NC_007954.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 196620 rpsJ 4017851 rpsJ Shewanella denitrificans OS217 30S ribosomal protein S10 YP_561189.1 196309 D 318161 CDS YP_561190.1 91791539 4017852 196648..197286 1 NC_007954.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 197286 rplC 4017852 rplC Shewanella denitrificans OS217 50S ribosomal protein L3 YP_561190.1 196648 D 318161 CDS YP_561191.1 91791540 4017853 197304..197909 1 NC_007954.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 197909 rplD 4017853 rplD Shewanella denitrificans OS217 50S ribosomal protein L4 YP_561191.1 197304 D 318161 CDS YP_561192.1 91791541 4017854 197906..198208 1 NC_007954.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 198208 rplW 4017854 rplW Shewanella denitrificans OS217 50S ribosomal protein L23 YP_561192.1 197906 D 318161 CDS YP_561193.1 91791542 4017855 198225..199049 1 NC_007954.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 199049 rplB 4017855 rplB Shewanella denitrificans OS217 50S ribosomal protein L2 YP_561193.1 198225 D 318161 CDS YP_561194.1 91791543 4017856 199065..199343 1 NC_007954.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 199343 rpsS 4017856 rpsS Shewanella denitrificans OS217 30S ribosomal protein S19 YP_561194.1 199065 D 318161 CDS YP_561195.1 91791544 4017857 199359..199691 1 NC_007954.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 199691 rplV 4017857 rplV Shewanella denitrificans OS217 50S ribosomal protein L22 YP_561195.1 199359 D 318161 CDS YP_561196.1 91791545 4017858 199704..200393 1 NC_007954.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 200393 rpsC 4017858 rpsC Shewanella denitrificans OS217 30S ribosomal protein S3 YP_561196.1 199704 D 318161 CDS YP_561197.1 91791546 4017859 200405..200815 1 NC_007954.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 200815 rplP 4017859 rplP Shewanella denitrificans OS217 50S ribosomal protein L16 YP_561197.1 200405 D 318161 CDS YP_561198.1 91791547 4017860 200815..201006 1 NC_007954.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 201006 4017860 Sden_0178 Shewanella denitrificans OS217 50S ribosomal protein L29 YP_561198.1 200815 D 318161 CDS YP_561199.1 91791548 4017861 201006..201254 1 NC_007954.1 30S ribosomal protein S17 201254 4017861 Sden_0179 Shewanella denitrificans OS217 30S ribosomal protein S17 YP_561199.1 201006 D 318161 CDS YP_561200.1 91791549 4017862 201434..201802 1 NC_007954.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 201802 rplN 4017862 rplN Shewanella denitrificans OS217 50S ribosomal protein L14 YP_561200.1 201434 D 318161 CDS YP_561201.1 91791550 4017863 201814..202128 1 NC_007954.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 202128 rplX 4017863 rplX Shewanella denitrificans OS217 50S ribosomal protein L24 YP_561201.1 201814 D 318161 CDS YP_561202.1 91791551 4017864 202141..202680 1 NC_007954.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 202680 rplE 4017864 rplE Shewanella denitrificans OS217 50S ribosomal protein L5 YP_561202.1 202141 D 318161 CDS YP_561203.1 91791552 4017865 202691..202996 1 NC_007954.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 202996 rpsN 4017865 rpsN Shewanella denitrificans OS217 30S ribosomal protein S14 YP_561203.1 202691 D 318161 CDS YP_561204.1 91791553 4017866 203021..203413 1 NC_007954.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 203413 rpsH 4017866 rpsH Shewanella denitrificans OS217 30S ribosomal protein S8 YP_561204.1 203021 D 318161 CDS YP_561205.1 91791554 4017905 203425..203958 1 NC_007954.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 203958 rplF 4017905 rplF Shewanella denitrificans OS217 50S ribosomal protein L6 YP_561205.1 203425 D 318161 CDS YP_561206.1 91791555 4017906 203969..204319 1 NC_007954.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 204319 rplR 4017906 rplR Shewanella denitrificans OS217 50S ribosomal protein L18 YP_561206.1 203969 D 318161 CDS YP_561207.1 91791556 4017907 204331..204834 1 NC_007954.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 204834 rpsE 4017907 rpsE Shewanella denitrificans OS217 30S ribosomal protein S5 YP_561207.1 204331 D 318161 CDS YP_561208.1 91791557 4017908 204841..205023 1 NC_007954.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 205023 rpmD 4017908 rpmD Shewanella denitrificans OS217 50S ribosomal protein L30 YP_561208.1 204841 D 318161 CDS YP_561209.1 91791558 4017909 205028..205462 1 NC_007954.1 late assembly protein; 50S ribosomal protein L15 205462 rplO 4017909 rplO Shewanella denitrificans OS217 50S ribosomal protein L15 YP_561209.1 205028 D 318161 CDS YP_561210.1 91791559 4017910 205470..206810 1 NC_007954.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 206810 secY 4017910 secY Shewanella denitrificans OS217 preprotein translocase subunit SecY YP_561210.1 205470 D 318161 CDS YP_561211.1 91791560 4017911 206800..206946 1 NC_007954.1 ribosomal protein L36 206946 4017911 Sden_0191 Shewanella denitrificans OS217 ribosomal protein L36 YP_561211.1 206800 D 318161 CDS YP_561212.1 91791561 4017912 207061..207417 1 NC_007954.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 207417 rpsM 4017912 rpsM Shewanella denitrificans OS217 30S ribosomal protein S13 YP_561212.1 207061 D 318161 CDS YP_561213.1 91791562 4017913 207435..207827 1 NC_007954.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 207827 4017913 Sden_0193 Shewanella denitrificans OS217 30S ribosomal protein S11 YP_561213.1 207435 D 318161 CDS YP_561214.1 91791563 4017914 207859..208479 1 NC_007954.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 208479 rpsD 4017914 rpsD Shewanella denitrificans OS217 30S ribosomal protein S4 YP_561214.1 207859 D 318161 CDS YP_561215.1 91791564 4017915 208504..209493 1 NC_007954.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 209493 4017915 Sden_0195 Shewanella denitrificans OS217 DNA-directed RNA polymerase subunit alpha YP_561215.1 208504 D 318161 CDS YP_561216.1 91791565 4017916 209537..209932 1 NC_007954.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 209932 rplQ 4017916 rplQ Shewanella denitrificans OS217 50S ribosomal protein L17 YP_561216.1 209537 D 318161 CDS YP_561217.1 91791566 4017917 210339..217580 1 NC_007954.1 Rhs family protein-like protein 217580 4017917 Sden_0197 Shewanella denitrificans OS217 Rhs family protein-like protein YP_561217.1 210339 D 318161 CDS YP_561218.1 91791567 4017918 complement(218186..218548) 1 NC_007954.1 hypothetical protein 218548 4017918 Sden_0198 Shewanella denitrificans OS217 hypothetical protein YP_561218.1 218186 R 318161 CDS YP_561219.1 91791568 4017919 complement(218807..219850) 1 NC_007954.1 transposase IS116/IS110/IS902 219850 4017919 Sden_0199 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_561219.1 218807 R 318161 CDS YP_561220.1 91791569 4017920 220138..221019 1 NC_007954.1 hypothetical protein 221019 4017920 Sden_0200 Shewanella denitrificans OS217 hypothetical protein YP_561220.1 220138 D 318161 CDS YP_561221.1 91791570 4017921 221336..223504 1 NC_007954.1 hypothetical protein 223504 4017921 Sden_0201 Shewanella denitrificans OS217 hypothetical protein YP_561221.1 221336 D 318161 CDS YP_561222.1 91791571 4017922 223511..223936 1 NC_007954.1 hypothetical protein 223936 4017922 Sden_0202 Shewanella denitrificans OS217 hypothetical protein YP_561222.1 223511 D 318161 CDS YP_561223.1 91791572 4017923 224154..224504 1 NC_007954.1 hypothetical protein 224504 4017923 Sden_0203 Shewanella denitrificans OS217 hypothetical protein YP_561223.1 224154 D 318161 CDS YP_561224.1 91791573 4017924 224727..225053 1 NC_007954.1 hypothetical protein 225053 4017924 Sden_0204 Shewanella denitrificans OS217 hypothetical protein YP_561224.1 224727 D 318161 CDS YP_561225.1 91791574 4017925 225295..226050 1 NC_007954.1 glycosyl transferase family protein 226050 4017925 Sden_0205 Shewanella denitrificans OS217 glycosyl transferase family protein YP_561225.1 225295 D 318161 CDS YP_561226.1 91791575 4017926 complement(226115..226870) 1 NC_007954.1 glycosyl transferase family protein 226870 4017926 Sden_0206 Shewanella denitrificans OS217 glycosyl transferase family protein YP_561226.1 226115 R 318161 CDS YP_561227.1 91791576 4017927 227056..227826 1 NC_007954.1 glycosyl transferase family protein 227826 4017927 Sden_0207 Shewanella denitrificans OS217 glycosyl transferase family protein YP_561227.1 227056 D 318161 CDS YP_561228.1 91791577 4017928 227843..228349 1 NC_007954.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 228349 coaD 4017928 coaD Shewanella denitrificans OS217 phosphopantetheine adenylyltransferase YP_561228.1 227843 D 318161 CDS YP_561229.1 91791578 4017929 228351..229835 1 NC_007954.1 hypothetical protein 229835 4017929 Sden_0209 Shewanella denitrificans OS217 hypothetical protein YP_561229.1 228351 D 318161 CDS YP_561230.1 91791579 4017930 complement(229919..230734) 1 NC_007954.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 230734 4017930 Sden_0210 Shewanella denitrificans OS217 formamidopyrimidine-DNA glycosylase YP_561230.1 229919 R 318161 CDS YP_561231.1 91791580 4017931 complement(230735..231229) 1 NC_007954.1 hypothetical protein 231229 4017931 Sden_0211 Shewanella denitrificans OS217 hypothetical protein YP_561231.1 230735 R 318161 CDS YP_561232.1 91791581 4017932 complement(231355..231900) 1 NC_007954.1 molybdopterin-guanine dinucleotide biosynthesis protein B 231900 4017932 Sden_0212 Shewanella denitrificans OS217 molybdopterin-guanine dinucleotide biosynthesis protein B YP_561232.1 231355 R 318161 CDS YP_561233.1 91791582 4017933 complement(231897..232523) 1 NC_007954.1 molybdopterin-guanine dinucleotide biosynthesis protein 232523 4017933 Sden_0213 Shewanella denitrificans OS217 molybdopterin-guanine dinucleotide biosynthesis protein YP_561233.1 231897 R 318161 CDS YP_561234.1 91791583 4017934 complement(232836..233495) 1 NC_007954.1 hypothetical protein 233495 4017934 Sden_0214 Shewanella denitrificans OS217 hypothetical protein YP_561234.1 232836 R 318161 CDS YP_561235.1 91791584 4017935 233966..235168 1 NC_007954.1 metal-dependent phosphohydrolase 235168 4017935 Sden_0215 Shewanella denitrificans OS217 metal-dependent phosphohydrolase YP_561235.1 233966 D 318161 CDS YP_561236.1 91791585 4017936 complement(235482..236429) 1 NC_007954.1 hypothetical protein 236429 4017936 Sden_0216 Shewanella denitrificans OS217 hypothetical protein YP_561236.1 235482 R 318161 CDS YP_561237.1 91791586 4017937 complement(236607..237116) 1 NC_007954.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 237116 4017937 Sden_0217 Shewanella denitrificans OS217 malate synthase YP_561237.1 236607 R 318161 CDS YP_561238.1 91791587 4017938 237282..238808 1 NC_007954.1 transciptional regulator 238808 4017938 Sden_0218 Shewanella denitrificans OS217 transciptional regulator YP_561238.1 237282 D 318161 CDS YP_561239.1 91791588 4017939 239052..239615 1 NC_007954.1 heme oxygenase 239615 4017939 Sden_0219 Shewanella denitrificans OS217 heme oxygenase YP_561239.1 239052 D 318161 CDS YP_561240.1 91791589 4017940 239621..240121 1 NC_007954.1 bacteriophytochrome-like protein 240121 4017940 Sden_0220 Shewanella denitrificans OS217 bacteriophytochrome-like protein YP_561240.1 239621 D 318161 CDS YP_561241.1 91791590 4017941 240144..242276 1 NC_007954.1 GGDEF domain-containing protein 242276 4017941 Sden_0221 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561241.1 240144 D 318161 CDS YP_561242.1 91791591 4017942 complement(243070..243744) 1 NC_007954.1 HAD family hydrolase 243744 4017942 Sden_0222 Shewanella denitrificans OS217 HAD family hydrolase YP_561242.1 243070 R 318161 CDS YP_561243.1 91791592 4017943 244271..250006 1 NC_007954.1 fibronectin, type III 250006 4017943 Sden_0223 Shewanella denitrificans OS217 fibronectin, type III YP_561243.1 244271 D 318161 CDS YP_561244.1 91791593 4017944 250237..250791 1 NC_007954.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 250791 nudE 4017944 nudE Shewanella denitrificans OS217 ADP-ribose diphosphatase NudE YP_561244.1 250237 D 318161 CDS YP_561245.1 91791594 4017945 250894..251703 1 NC_007954.1 3'(2'),5'-bisphosphate nucleotidase 251703 4017945 Sden_0225 Shewanella denitrificans OS217 3'(2'),5'-bisphosphate nucleotidase YP_561245.1 250894 D 318161 CDS YP_561246.1 91791595 4017946 251800..253110 1 NC_007954.1 hypothetical protein 253110 4017946 Sden_0226 Shewanella denitrificans OS217 hypothetical protein YP_561246.1 251800 D 318161 CDS YP_561247.1 91791596 4017947 complement(253148..254251) 1 NC_007954.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 254251 4017947 Sden_0227 Shewanella denitrificans OS217 tRNA 2-selenouridine synthase YP_561247.1 253148 R 318161 CDS YP_561248.1 91791597 4017948 complement(254248..255291) 1 NC_007954.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 255291 4017948 Sden_0228 Shewanella denitrificans OS217 selenophosphate synthetase YP_561248.1 254248 R 318161 CDS YP_561249.1 91791598 4017949 complement(255388..256494) 1 NC_007954.1 stearoyl-CoA 9-desaturase 256494 4017949 Sden_0229 Shewanella denitrificans OS217 stearoyl-CoA 9-desaturase YP_561249.1 255388 R 318161 CDS YP_561250.1 91791599 4017950 256639..257256 1 NC_007954.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 257256 4017950 Sden_0230 Shewanella denitrificans OS217 DNA-binding transcriptional repressor FabR YP_561250.1 256639 D 318161 CDS YP_561251.1 91791600 4017951 complement(257337..258434) 1 NC_007954.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 258434 4017951 Sden_0231 Shewanella denitrificans OS217 tRNA (uracil-5-)-methyltransferase YP_561251.1 257337 R 318161 CDS YP_561252.1 91791601 4017952 258675..259508 1 NC_007954.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 259508 4017952 Sden_0232 Shewanella denitrificans OS217 glutamate racemase YP_561252.1 258675 D 318161 CDS YP_561253.1 91791602 4017953 complement(259690..260139) 1 NC_007954.1 RNA-binding protein 260139 4017953 Sden_0233 Shewanella denitrificans OS217 RNA-binding protein YP_561253.1 259690 R 318161 CDS YP_561254.1 91791603 4017981 complement(267196..267861) 1 NC_007954.1 response regulator receiver 267861 4017981 Sden_0234 Shewanella denitrificans OS217 response regulator receiver YP_561254.1 267196 R 318161 CDS YP_561255.1 91791604 4017982 complement(267896..269383) 1 NC_007954.1 ATP-binding region, ATPase-like protein 269383 4017982 Sden_0235 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561255.1 267896 R 318161 CDS YP_561256.1 91791605 4017983 269671..270681 1 NC_007954.1 hypothetical protein 270681 4017983 Sden_0236 Shewanella denitrificans OS217 hypothetical protein YP_561256.1 269671 D 318161 CDS YP_561257.1 91791606 4017984 270684..271238 1 NC_007954.1 hypothetical protein 271238 4017984 Sden_0237 Shewanella denitrificans OS217 hypothetical protein YP_561257.1 270684 D 318161 CDS YP_561258.1 91791607 4017985 complement(271412..272353) 1 NC_007954.1 integrase catalytic subunit 272353 4017985 Sden_0238 Shewanella denitrificans OS217 integrase catalytic subunit YP_561258.1 271412 R 318161 CDS YP_561259.1 91791608 4017986 272495..273274 1 NC_007954.1 thioesterase 273274 4017986 Sden_0239 Shewanella denitrificans OS217 thioesterase YP_561259.1 272495 D 318161 CDS YP_561260.1 91791609 4017987 complement(273401..273901) 1 NC_007954.1 transcription elongation factor GreB 273901 4017987 Sden_0240 Shewanella denitrificans OS217 transcription elongation factor GreB YP_561260.1 273401 R 318161 CDS YP_561261.1 91791610 4017989 275231..276163 1 NC_007954.1 esterase 276163 4017989 Sden_0242 Shewanella denitrificans OS217 esterase YP_561261.1 275231 D 318161 CDS YP_561262.1 91791611 4017990 276435..278834 1 NC_007954.1 RNA binding S1 278834 4017990 Sden_0243 Shewanella denitrificans OS217 RNA binding S1 YP_561262.1 276435 D 318161 CDS YP_561263.1 91791612 4017991 278944..279738 1 NC_007954.1 SMC protein-like protein 279738 4017991 Sden_0244 Shewanella denitrificans OS217 SMC protein-like protein YP_561263.1 278944 D 318161 CDS YP_561264.1 91791613 4017992 complement(279756..281009) 1 NC_007954.1 GGDEF domain-containing protein 281009 4017992 Sden_0245 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561264.1 279756 R 318161 CDS YP_561265.1 91791614 4017993 281303..282577 1 NC_007954.1 competence-damaged protein 282577 4017993 Sden_0246 Shewanella denitrificans OS217 competence-damaged protein YP_561265.1 281303 D 318161 CDS YP_561266.1 91791615 4017994 complement(282677..283216) 1 NC_007954.1 hypothetical protein 283216 4017994 Sden_0247 Shewanella denitrificans OS217 hypothetical protein YP_561266.1 282677 R 318161 CDS YP_561267.1 91791616 4017995 complement(283213..285876) 1 NC_007954.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 285876 4017995 Sden_0248 Shewanella denitrificans OS217 phosphoenolpyruvate carboxylase YP_561267.1 283213 R 318161 CDS YP_561268.1 91791617 4020360 complement(286030..286323) 1 NC_007954.1 hypothetical protein 286323 4020360 Sden_0249 Shewanella denitrificans OS217 hypothetical protein YP_561268.1 286030 R 318161 CDS YP_561269.1 91791618 4020361 286666..287646 1 NC_007954.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 287646 argC 4020361 argC Shewanella denitrificans OS217 N-acetyl-gamma-glutamyl-phosphate reductase YP_561269.1 286666 D 318161 CDS YP_561270.1 91791619 4020362 287671..288453 1 NC_007954.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 288453 4020362 Sden_0251 Shewanella denitrificans OS217 acetylglutamate kinase YP_561270.1 287671 D 318161 CDS YP_561271.1 91791620 4020363 288504..289409 1 NC_007954.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 289409 4020363 Sden_0252 Shewanella denitrificans OS217 ornithine carbamoyltransferase YP_561271.1 288504 D 318161 CDS YP_561272.1 91791621 4020364 289500..290723 1 NC_007954.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 290723 4020364 Sden_0253 Shewanella denitrificans OS217 argininosuccinate synthase YP_561272.1 289500 D 318161 CDS YP_561273.1 91791622 4020365 290820..292187 1 NC_007954.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 292187 4020365 Sden_0254 Shewanella denitrificans OS217 argininosuccinate lyase YP_561273.1 290820 D 318161 CDS YP_561274.1 91791623 4020366 complement(292281..294878) 1 NC_007954.1 penicillin-binding protein 1A 294878 4020366 Sden_0255 Shewanella denitrificans OS217 penicillin-binding protein 1A YP_561274.1 292281 R 318161 CDS YP_561275.1 91791624 4020367 294990..296069 1 NC_007954.1 type IV pilus assembly protein PilM 296069 4020367 Sden_0256 Shewanella denitrificans OS217 type IV pilus assembly protein PilM YP_561275.1 294990 D 318161 CDS YP_561276.1 91791625 4020368 296057..296650 1 NC_007954.1 fimbrial assembly 296650 4020368 Sden_0257 Shewanella denitrificans OS217 fimbrial assembly YP_561276.1 296057 D 318161 CDS YP_561277.1 91791626 4020369 296647..297267 1 NC_007954.1 pilus assembly protein, PilO 297267 4020369 Sden_0258 Shewanella denitrificans OS217 pilus assembly protein, PilO YP_561277.1 296647 D 318161 CDS YP_561278.1 91791627 4020370 297267..297785 1 NC_007954.1 pilus assembly protein, PilQ 297785 4020370 Sden_0259 Shewanella denitrificans OS217 pilus assembly protein, PilQ YP_561278.1 297267 D 318161 CDS YP_561279.1 91791628 4020371 297804..299855 1 NC_007954.1 type II and III secretion system protein 299855 4020371 Sden_0260 Shewanella denitrificans OS217 type II and III secretion system protein YP_561279.1 297804 D 318161 CDS YP_561280.1 91791629 4020372 300156..300671 1 NC_007954.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 300671 aroK 4020372 aroK Shewanella denitrificans OS217 shikimate kinase I YP_561280.1 300156 D 318161 CDS YP_561281.1 91791630 4020373 300680..301753 1 NC_007954.1 3-dehydroquinate synthase 301753 4020373 Sden_0262 Shewanella denitrificans OS217 3-dehydroquinate synthase YP_561281.1 300680 D 318161 CDS YP_561282.1 91791631 4020374 301785..303320 1 NC_007954.1 sporulation related 303320 4020374 Sden_0263 Shewanella denitrificans OS217 sporulation related YP_561282.1 301785 D 318161 CDS YP_561283.1 91791632 4020375 303394..304233 1 NC_007954.1 DNA adenine methylase 304233 4020375 Sden_0264 Shewanella denitrificans OS217 DNA adenine methylase YP_561283.1 303394 D 318161 CDS YP_561284.1 91791633 4020376 complement(304306..304488) 1 NC_007954.1 hypothetical protein 304488 4020376 Sden_0265 Shewanella denitrificans OS217 hypothetical protein YP_561284.1 304306 R 318161 CDS YP_561285.1 91791634 4020377 complement(304489..304872) 1 NC_007954.1 hypothetical protein 304872 4020377 Sden_0266 Shewanella denitrificans OS217 hypothetical protein YP_561285.1 304489 R 318161 CDS YP_561286.1 91791635 4020378 305182..305850 1 NC_007954.1 ribulose-phosphate 3-epimerase 305850 4020378 Sden_0267 Shewanella denitrificans OS217 ribulose-phosphate 3-epimerase YP_561286.1 305182 D 318161 CDS YP_561287.1 91791636 4020399 305861..306547 1 NC_007954.1 phosphoglycolate phosphatase 306547 4020399 Sden_0268 Shewanella denitrificans OS217 phosphoglycolate phosphatase YP_561287.1 305861 D 318161 CDS YP_561288.1 91791637 4020400 306596..307594 1 NC_007954.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 307594 4020400 Sden_0269 Shewanella denitrificans OS217 tryptophanyl-tRNA synthetase YP_561288.1 306596 D 318161 CDS YP_561289.1 91791638 4020401 complement(307665..308240) 1 NC_007954.1 transport-associated 308240 4020401 Sden_0270 Shewanella denitrificans OS217 transport-associated YP_561289.1 307665 R 318161 CDS YP_561290.1 91791639 4020402 complement(308240..308830) 1 NC_007954.1 phosphoheptose isomerase 308830 4020402 Sden_0271 Shewanella denitrificans OS217 phosphoheptose isomerase YP_561290.1 308240 R 318161 CDS YP_561291.1 91791640 4020403 complement(308904..309230) 1 NC_007954.1 hypothetical protein 309230 4020403 Sden_0272 Shewanella denitrificans OS217 hypothetical protein YP_561291.1 308904 R 318161 CDS YP_561292.1 91791641 4020404 complement(309227..311038) 1 NC_007954.1 LppC lipoprotein 311038 4020404 Sden_0273 Shewanella denitrificans OS217 LppC lipoprotein YP_561292.1 309227 R 318161 CDS YP_561293.1 91791642 4020405 311154..311996 1 NC_007954.1 hypothetical protein 311996 4020405 Sden_0274 Shewanella denitrificans OS217 hypothetical protein YP_561293.1 311154 D 318161 CDS YP_561294.1 91791643 4020407 313011..313502 1 NC_007954.1 hypothetical protein 313502 4020407 Sden_0275 Shewanella denitrificans OS217 hypothetical protein YP_561294.1 313011 D 318161 CDS YP_561295.1 91791644 4020408 complement(313518..313748) 1 NC_007954.1 hypothetical protein 313748 4020408 Sden_0276 Shewanella denitrificans OS217 hypothetical protein YP_561295.1 313518 R 318161 CDS YP_561296.1 91791645 4020409 complement(313887..314087) 1 NC_007954.1 hypothetical protein 314087 4020409 Sden_0277 Shewanella denitrificans OS217 hypothetical protein YP_561296.1 313887 R 318161 CDS YP_561297.1 91791646 4020410 314329..314865 1 NC_007954.1 hypothetical protein 314865 4020410 Sden_0278 Shewanella denitrificans OS217 hypothetical protein YP_561297.1 314329 D 318161 CDS YP_561298.1 91791647 4020411 complement(314994..315566) 1 NC_007954.1 hypothetical protein 315566 4020411 Sden_0279 Shewanella denitrificans OS217 hypothetical protein YP_561298.1 314994 R 318161 CDS YP_561299.1 91791648 4020412 complement(315663..317738) 1 NC_007954.1 peptidase S9, prolyl oligopeptidase active site region 317738 4020412 Sden_0280 Shewanella denitrificans OS217 peptidase S9, prolyl oligopeptidase active site region YP_561299.1 315663 R 318161 CDS YP_561300.1 91791649 4020413 318090..318881 1 NC_007954.1 hypothetical protein 318881 4020413 Sden_0281 Shewanella denitrificans OS217 hypothetical protein YP_561300.1 318090 D 318161 CDS YP_561301.1 91791650 4020414 319081..319437 1 NC_007954.1 hypothetical protein 319437 4020414 Sden_0282 Shewanella denitrificans OS217 hypothetical protein YP_561301.1 319081 D 318161 CDS YP_561302.1 91791651 4020415 319489..319809 1 NC_007954.1 hypothetical protein 319809 4020415 Sden_0283 Shewanella denitrificans OS217 hypothetical protein YP_561302.1 319489 D 318161 CDS YP_561303.1 91791652 4020416 319802..320791 1 NC_007954.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 320791 4020416 Sden_0284 Shewanella denitrificans OS217 serine/threonine protein kinase YP_561303.1 319802 D 318161 CDS YP_561304.1 91791653 4020417 320939..321550 1 NC_007954.1 DSBA oxidoreductase 321550 4020417 Sden_0285 Shewanella denitrificans OS217 DSBA oxidoreductase YP_561304.1 320939 D 318161 CDS YP_561305.1 91791654 4019790 321952..322155 1 NC_007954.1 hypothetical protein 322155 4019790 Sden_0286 Shewanella denitrificans OS217 hypothetical protein YP_561305.1 321952 D 318161 CDS YP_561306.1 91791655 4019791 complement(322152..322352) 1 NC_007954.1 hypothetical protein 322352 4019791 Sden_0287 Shewanella denitrificans OS217 hypothetical protein YP_561306.1 322152 R 318161 CDS YP_561307.1 91791656 4019792 322655..323005 1 NC_007954.1 endoribonuclease L-PSP 323005 4019792 Sden_0288 Shewanella denitrificans OS217 endoribonuclease L-PSP YP_561307.1 322655 D 318161 CDS YP_561308.1 91791657 4019793 323184..324275 1 NC_007954.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 324275 4019793 Sden_0289 Shewanella denitrificans OS217 branched-chain amino acid aminotransferase YP_561308.1 323184 D 318161 CDS YP_561309.1 91791658 4019794 complement(324324..324479) 1 NC_007954.1 nuclease 324479 4019794 Sden_0290 Shewanella denitrificans OS217 nuclease YP_561309.1 324324 R 318161 CDS YP_561310.1 91791659 4019795 complement(324467..324979) 1 NC_007954.1 ERCC4 324979 4019795 Sden_0291 Shewanella denitrificans OS217 ERCC4 YP_561310.1 324467 R 318161 CDS YP_561311.1 91791660 4019796 325245..326243 1 NC_007954.1 metal-binding protein 326243 4019796 Sden_0292 Shewanella denitrificans OS217 metal-binding protein YP_561311.1 325245 D 318161 CDS YP_561312.1 91791661 4019797 326436..326696 1 NC_007954.1 hypothetical protein 326696 4019797 Sden_0293 Shewanella denitrificans OS217 hypothetical protein YP_561312.1 326436 D 318161 CDS YP_561313.1 91791662 4019798 326962..328041 1 NC_007954.1 filamentation induced by cAMP protein Fic 328041 4019798 Sden_0294 Shewanella denitrificans OS217 filamentation induced by cAMP protein Fic YP_561313.1 326962 D 318161 CDS YP_561314.1 91791663 4019800 328711..330219 1 NC_007954.1 hypothetical protein 330219 4019800 Sden_0296 Shewanella denitrificans OS217 hypothetical protein YP_561314.1 328711 D 318161 CDS YP_561315.1 91791664 4019801 complement(330281..330883) 1 NC_007954.1 hypothetical protein 330883 4019801 Sden_0297 Shewanella denitrificans OS217 hypothetical protein YP_561315.1 330281 R 318161 CDS YP_561316.1 91791665 4019802 complement(331141..332454) 1 NC_007954.1 hypothetical protein 332454 4019802 Sden_0298 Shewanella denitrificans OS217 hypothetical protein YP_561316.1 331141 R 318161 CDS YP_561317.1 91791666 4019803 332784..333308 1 NC_007954.1 hypothetical protein 333308 4019803 Sden_0299 Shewanella denitrificans OS217 hypothetical protein YP_561317.1 332784 D 318161 CDS YP_561318.1 91791667 4019804 333337..334224 1 NC_007954.1 hypothetical protein 334224 4019804 Sden_0300 Shewanella denitrificans OS217 hypothetical protein YP_561318.1 333337 D 318161 CDS YP_561319.1 91791668 4019805 334795..337950 1 NC_007954.1 type III restriction enzyme, res subunit 337950 4019805 Sden_0301 Shewanella denitrificans OS217 type III restriction enzyme, res subunit YP_561319.1 334795 D 318161 CDS YP_561320.1 91791669 4019806 complement(338252..338395) 1 NC_007954.1 hypothetical protein 338395 4019806 Sden_0302 Shewanella denitrificans OS217 hypothetical protein YP_561320.1 338252 R 318161 CDS YP_561321.1 91791670 4019807 338674..339672 1 NC_007954.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 339672 4019807 Sden_0303 Shewanella denitrificans OS217 delta-aminolevulinic acid dehydratase YP_561321.1 338674 D 318161 CDS YP_561322.1 91791671 4019808 339732..340553 1 NC_007954.1 hypothetical protein 340553 4019808 Sden_0304 Shewanella denitrificans OS217 hypothetical protein YP_561322.1 339732 D 318161 CDS YP_561323.1 91791672 4020418 340617..341345 1 NC_007954.1 hypothetical protein 341345 4020418 Sden_0305 Shewanella denitrificans OS217 hypothetical protein YP_561323.1 340617 D 318161 CDS YP_561324.1 91791673 4020419 341656..341937 1 NC_007954.1 transciptional regulator 341937 4020419 Sden_0306 Shewanella denitrificans OS217 transciptional regulator YP_561324.1 341656 D 318161 CDS YP_561325.1 91791674 4020420 341937..343244 1 NC_007954.1 HipA-like protein 343244 4020420 Sden_0307 Shewanella denitrificans OS217 HipA-like protein YP_561325.1 341937 D 318161 CDS YP_561326.1 91791675 4020421 complement(343856..347116) 1 NC_007954.1 hypothetical protein 347116 4020421 Sden_0308 Shewanella denitrificans OS217 hypothetical protein YP_561326.1 343856 R 318161 CDS YP_561327.1 91791676 4020422 complement(347129..349204) 1 NC_007954.1 hypothetical protein 349204 4020422 Sden_0309 Shewanella denitrificans OS217 hypothetical protein YP_561327.1 347129 R 318161 CDS YP_561328.1 91791677 4020423 complement(349204..351003) 1 NC_007954.1 DNA methylase N-4/N-6 351003 4020423 Sden_0310 Shewanella denitrificans OS217 DNA methylase N-4/N-6 YP_561328.1 349204 R 318161 CDS YP_561329.1 91791678 4020424 complement(351243..351860) 1 NC_007954.1 hypothetical protein 351860 4020424 Sden_0311 Shewanella denitrificans OS217 hypothetical protein YP_561329.1 351243 R 318161 CDS YP_561330.1 91791679 4020425 complement(352296..352925) 1 NC_007954.1 phage integrase 352925 4020425 Sden_0312 Shewanella denitrificans OS217 phage integrase YP_561330.1 352296 R 318161 CDS YP_561331.1 91791680 4020426 complement(353369..353827) 1 NC_007954.1 hypothetical protein 353827 4020426 Sden_0313 Shewanella denitrificans OS217 hypothetical protein YP_561331.1 353369 R 318161 CDS YP_561332.1 91791681 4020427 complement(353886..354158) 1 NC_007954.1 hypothetical protein 354158 4020427 Sden_0314 Shewanella denitrificans OS217 hypothetical protein YP_561332.1 353886 R 318161 CDS YP_561333.1 91791682 4020428 complement(354155..354451) 1 NC_007954.1 prophage CP4-57 regulatory 354451 4020428 Sden_0315 Shewanella denitrificans OS217 prophage CP4-57 regulatory YP_561333.1 354155 R 318161 CDS YP_561334.1 91791683 4020429 complement(354549..355280) 1 NC_007954.1 hypothetical protein 355280 4020429 Sden_0316 Shewanella denitrificans OS217 hypothetical protein YP_561334.1 354549 R 318161 CDS YP_561335.1 91791684 4020430 complement(355277..356491) 1 NC_007954.1 phage integrase 356491 4020430 Sden_0317 Shewanella denitrificans OS217 phage integrase YP_561335.1 355277 R 318161 CDS YP_561336.1 91791685 4020431 complement(356660..357523) 1 NC_007954.1 hypothetical protein 357523 4020431 Sden_0318 Shewanella denitrificans OS217 hypothetical protein YP_561336.1 356660 R 318161 CDS YP_561337.1 91791686 4020432 357751..358464 1 NC_007954.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 358464 rph 4020432 rph Shewanella denitrificans OS217 ribonuclease PH YP_561337.1 357751 D 318161 CDS YP_561338.1 91791687 4020433 358537..359178 1 NC_007954.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 359178 pyrE 4020433 pyrE Shewanella denitrificans OS217 orotate phosphoribosyltransferase YP_561338.1 358537 D 318161 CDS YP_561339.1 91791688 4020434 complement(359333..359986) 1 NC_007954.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 359986 folE 4020434 folE Shewanella denitrificans OS217 GTP cyclohydrolase I YP_561339.1 359333 R 318161 CDS YP_561340.1 91791689 4020435 complement(360166..362127) 1 NC_007954.1 peptidase S9, prolyl oligopeptidase active site region 362127 4020435 Sden_0322 Shewanella denitrificans OS217 peptidase S9, prolyl oligopeptidase active site region YP_561340.1 360166 R 318161 CDS YP_561341.1 91791690 4020436 complement(362232..362825) 1 NC_007954.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 362825 slmA 4020436 slmA Shewanella denitrificans OS217 nucleoid occlusion protein YP_561341.1 362232 R 318161 CDS YP_561342.1 91791691 4020437 complement(362861..363319) 1 NC_007954.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 363319 dut 4020437 dut Shewanella denitrificans OS217 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_561342.1 362861 R 318161 CDS YP_561343.1 91791692 4020341 complement(363316..364509) 1 NC_007954.1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 364509 4020341 Sden_0325 Shewanella denitrificans OS217 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_561343.1 363316 R 318161 CDS YP_561344.1 91791693 4020342 364641..365318 1 NC_007954.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 365318 radC 4020342 radC Shewanella denitrificans OS217 DNA repair protein RadC YP_561344.1 364641 D 318161 CDS YP_561345.1 91791694 4020343 365355..365675 1 NC_007954.1 ribosomal protein L28 365675 4020343 Sden_0327 Shewanella denitrificans OS217 ribosomal protein L28 YP_561345.1 365355 D 318161 CDS YP_561346.1 91791695 4020344 365682..365855 1 NC_007954.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 365855 rpmG 4020344 rpmG Shewanella denitrificans OS217 50S ribosomal protein L33 YP_561346.1 365682 D 318161 CDS YP_561347.1 91791696 4020345 366115..367434 1 NC_007954.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 367434 4020345 Sden_0329 Shewanella denitrificans OS217 N-acetylglutamate synthase YP_561347.1 366115 D 318161 CDS YP_561348.1 91791697 4020346 complement(367537..368439) 1 NC_007954.1 rarD protein 368439 4020346 Sden_0330 Shewanella denitrificans OS217 rarD protein YP_561348.1 367537 R 318161 CDS YP_561349.1 91791698 4020347 complement(368582..369046) 1 NC_007954.1 hypothetical protein 369046 4020347 Sden_0331 Shewanella denitrificans OS217 hypothetical protein YP_561349.1 368582 R 318161 CDS YP_561350.1 91791699 4020348 369240..371081 1 NC_007954.1 ATP-dependent DNA helicase RecQ 371081 4020348 Sden_0332 Shewanella denitrificans OS217 ATP-dependent DNA helicase RecQ YP_561350.1 369240 D 318161 CDS YP_561351.1 91791700 4020349 complement(371096..372814) 1 NC_007954.1 tetratricopeptide TPR_2 372814 4020349 Sden_0333 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_561351.1 371096 R 318161 CDS YP_561352.1 91791701 4020350 373329..374897 1 NC_007954.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 374897 4020350 Sden_0334 Shewanella denitrificans OS217 2-isopropylmalate synthase YP_561352.1 373329 D 318161 CDS YP_561353.1 91791702 4020351 374894..375988 1 NC_007954.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 375988 4020351 Sden_0335 Shewanella denitrificans OS217 3-isopropylmalate dehydrogenase YP_561353.1 374894 D 318161 CDS YP_561354.1 91791703 4020352 375988..377436 1 NC_007954.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 377436 4020352 Sden_0336 Shewanella denitrificans OS217 isopropylmalate isomerase large subunit YP_561354.1 375988 D 318161 CDS YP_561355.1 91791704 4020353 377452..378057 1 NC_007954.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 378057 leuD 4020353 leuD Shewanella denitrificans OS217 isopropylmalate isomerase small subunit YP_561355.1 377452 D 318161 CDS YP_561356.1 91791705 4020354 complement(378097..378369) 1 NC_007954.1 hypothetical protein 378369 4020354 Sden_0338 Shewanella denitrificans OS217 hypothetical protein YP_561356.1 378097 R 318161 CDS YP_561357.1 91791706 4020355 378604..379833 1 NC_007954.1 signal transduction protein 379833 4020355 Sden_0339 Shewanella denitrificans OS217 signal transduction protein YP_561357.1 378604 D 318161 CDS YP_561358.1 91791707 4020356 380353..381705 1 NC_007954.1 aromatic hydrocarbon degradation membrane protein 381705 4020356 Sden_0340 Shewanella denitrificans OS217 aromatic hydrocarbon degradation membrane protein YP_561358.1 380353 D 318161 CDS YP_561359.1 91791708 4020357 381849..382292 1 NC_007954.1 hypothetical protein 382292 4020357 Sden_0341 Shewanella denitrificans OS217 hypothetical protein YP_561359.1 381849 D 318161 CDS YP_561360.1 91791709 4020358 382390..383883 1 NC_007954.1 glycerol kinase 383883 4020358 Sden_0342 Shewanella denitrificans OS217 glycerol kinase YP_561360.1 382390 D 318161 CDS YP_561361.1 91791710 4020359 complement(383931..384275) 1 NC_007954.1 hypothetical protein 384275 4020359 Sden_0343 Shewanella denitrificans OS217 hypothetical protein YP_561361.1 383931 R 318161 CDS YP_561362.1 91791711 4017867 complement(384337..385473) 1 NC_007954.1 ferredoxin 385473 4017867 Sden_0344 Shewanella denitrificans OS217 ferredoxin YP_561362.1 384337 R 318161 CDS YP_561363.1 91791712 4017868 complement(385473..386216) 1 NC_007954.1 PepSY-associated TM helix 386216 4017868 Sden_0345 Shewanella denitrificans OS217 PepSY-associated TM helix YP_561363.1 385473 R 318161 CDS YP_561364.1 91791713 4017869 386597..387055 1 NC_007954.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 387055 4017869 Sden_0346 Shewanella denitrificans OS217 cell division protein MraZ YP_561364.1 386597 D 318161 CDS YP_561365.1 91791714 4017870 387083..388024 1 NC_007954.1 S-adenosyl-methyltransferase MraW 388024 mraW 4017870 mraW Shewanella denitrificans OS217 S-adenosyl-methyltransferase MraW YP_561365.1 387083 D 318161 CDS YP_561366.1 91791715 4017871 388039..388353 1 NC_007954.1 cell division protein, FtsL -like protein 388353 4017871 Sden_0348 Shewanella denitrificans OS217 cell division protein, FtsL -like protein YP_561366.1 388039 D 318161 CDS YP_561367.1 91791716 4017872 388364..390109 1 NC_007954.1 peptidoglycan glycosyltransferase 390109 4017872 Sden_0349 Shewanella denitrificans OS217 peptidoglycan glycosyltransferase YP_561367.1 388364 D 318161 CDS YP_561368.1 91791717 4017873 390106..391614 1 NC_007954.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 391614 murE 4017873 murE Shewanella denitrificans OS217 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_561368.1 390106 D 318161 CDS YP_561369.1 91791718 4017874 391611..392984 1 NC_007954.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 392984 4017874 Sden_0351 Shewanella denitrificans OS217 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_561369.1 391611 D 318161 CDS YP_561370.1 91791719 4017875 392985..394067 1 NC_007954.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 394067 mraY 4017875 mraY Shewanella denitrificans OS217 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_561370.1 392985 D 318161 CDS YP_561371.1 91791720 4017876 394074..395396 1 NC_007954.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 395396 murD 4017876 murD Shewanella denitrificans OS217 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_561371.1 394074 D 318161 CDS YP_561372.1 91791721 4017877 395386..396600 1 NC_007954.1 phosphopantetheine attachment site 396600 4017877 Sden_0354 Shewanella denitrificans OS217 phosphopantetheine attachment site YP_561372.1 395386 D 318161 CDS YP_561373.1 91791722 4017878 396600..397700 1 NC_007954.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 397700 murG 4017878 murG Shewanella denitrificans OS217 UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_561373.1 396600 D 318161 CDS YP_561374.1 91791723 4017879 397702..399141 1 NC_007954.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 399141 murC 4017879 murC Shewanella denitrificans OS217 UDP-N-acetylmuramate--L-alanine ligase YP_561374.1 397702 D 318161 CDS YP_561375.1 91791724 4017880 399274..400026 1 NC_007954.1 cell division protein FtsQ 400026 4017880 Sden_0357 Shewanella denitrificans OS217 cell division protein FtsQ YP_561375.1 399274 D 318161 CDS YP_561376.1 91791725 4017881 400042..401277 1 NC_007954.1 cell division protein FtsA 401277 4017881 Sden_0358 Shewanella denitrificans OS217 cell division protein FtsA YP_561376.1 400042 D 318161 CDS YP_561377.1 91791726 4017882 401304..402491 1 NC_007954.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 402491 4017882 Sden_0359 Shewanella denitrificans OS217 cell division protein FtsZ YP_561377.1 401304 D 318161 CDS YP_561378.1 91791727 4017883 402712..403632 1 NC_007954.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 403632 lpxC 4017883 lpxC Shewanella denitrificans OS217 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_561378.1 402712 D 318161 CDS YP_561379.1 91791728 4017884 complement(403637..404089) 1 NC_007954.1 hypothetical protein 404089 4017884 Sden_0361 Shewanella denitrificans OS217 hypothetical protein YP_561379.1 403637 R 318161 CDS YP_561380.1 91791729 4017885 404117..405016 1 NC_007954.1 peptidase M23B 405016 4017885 Sden_0362 Shewanella denitrificans OS217 peptidase M23B YP_561380.1 404117 D 318161 CDS YP_561381.1 91791730 4017886 405074..407797 1 NC_007954.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 407797 4017886 Sden_0363 Shewanella denitrificans OS217 preprotein translocase subunit SecA YP_561381.1 405074 D 318161 CDS YP_561382.1 91791731 4016690 414806..416008 1 NC_007954.1 transposase, mutator type 416008 4016690 Sden_0364 Shewanella denitrificans OS217 transposase, mutator type YP_561382.1 414806 D 318161 CDS YP_561383.1 91791732 4016691 complement(415860..416768) 1 NC_007954.1 integrase catalytic subunit 416768 4016691 Sden_0365 Shewanella denitrificans OS217 integrase catalytic subunit YP_561383.1 415860 R 318161 CDS YP_561384.1 91791733 4016692 complement(416765..417076) 1 NC_007954.1 glycine betaine/choline/proline transport system permease protein 417076 4016692 Sden_0366 Shewanella denitrificans OS217 glycine betaine/choline/proline transport system permease protein YP_561384.1 416765 R 318161 CDS YP_561385.1 91791734 4016693 complement(417448..417951) 1 NC_007954.1 divergent AAA region 417951 4016693 Sden_0367 Shewanella denitrificans OS217 divergent AAA region YP_561385.1 417448 R 318161 CDS YP_561386.1 91791735 4016694 418272..420098 1 NC_007954.1 potassium efflux system protein 420098 4016694 Sden_0368 Shewanella denitrificans OS217 potassium efflux system protein YP_561386.1 418272 D 318161 CDS YP_561387.1 91791736 4016695 complement(420173..421483) 1 NC_007954.1 FAD dependent oxidoreductase 421483 4016695 Sden_0369 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_561387.1 420173 R 318161 CDS YP_561388.1 91791737 4016696 complement(421588..422430) 1 NC_007954.1 hypothetical protein 422430 4016696 Sden_0370 Shewanella denitrificans OS217 hypothetical protein YP_561388.1 421588 R 318161 CDS YP_561389.1 91791738 4016697 complement(422526..425273) 1 NC_007954.1 hypothetical protein 425273 4016697 Sden_0371 Shewanella denitrificans OS217 hypothetical protein YP_561389.1 422526 R 318161 CDS YP_561390.1 91791739 4016698 425545..426099 1 NC_007954.1 hypothetical protein 426099 4016698 Sden_0372 Shewanella denitrificans OS217 hypothetical protein YP_561390.1 425545 D 318161 CDS YP_561391.1 91791740 4016699 complement(426188..426667) 1 NC_007954.1 globin 426667 4016699 Sden_0373 Shewanella denitrificans OS217 globin YP_561391.1 426188 R 318161 CDS YP_561392.1 91791741 4016700 complement(426664..427536) 1 NC_007954.1 hypothetical protein 427536 4016700 Sden_0374 Shewanella denitrificans OS217 hypothetical protein YP_561392.1 426664 R 318161 CDS YP_561393.1 91791742 4017509 complement(427546..429834) 1 NC_007954.1 GGDEF domain-containing protein 429834 4017509 Sden_0375 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561393.1 427546 R 318161 CDS YP_561394.1 91791743 4017510 complement(429834..430517) 1 NC_007954.1 hypothetical protein 430517 4017510 Sden_0376 Shewanella denitrificans OS217 hypothetical protein YP_561394.1 429834 R 318161 CDS YP_561395.1 91791744 4017511 complement(430704..431129) 1 NC_007954.1 OsmC-like protein 431129 4017511 Sden_0377 Shewanella denitrificans OS217 OsmC-like protein YP_561395.1 430704 R 318161 CDS YP_561396.1 91791745 4017512 complement(431506..433428) 1 NC_007954.1 histidine kinase 433428 4017512 Sden_0378 Shewanella denitrificans OS217 histidine kinase YP_561396.1 431506 R 318161 CDS YP_561397.1 91791746 4017513 complement(433437..434150) 1 NC_007954.1 hypothetical protein 434150 4017513 Sden_0379 Shewanella denitrificans OS217 hypothetical protein YP_561397.1 433437 R 318161 CDS YP_561398.1 91791747 4017514 complement(434295..434900) 1 NC_007954.1 OmpA/MotB 434900 4017514 Sden_0380 Shewanella denitrificans OS217 OmpA/MotB YP_561398.1 434295 R 318161 CDS YP_561399.1 91791748 4017515 complement(434897..436303) 1 NC_007954.1 Type I secretion outer membrane protein, TolC 436303 4017515 Sden_0381 Shewanella denitrificans OS217 Type I secretion outer membrane protein, TolC YP_561399.1 434897 R 318161 CDS YP_561400.1 91791749 4017516 complement(436330..437712) 1 NC_007954.1 Type I secretion membrane fusion protein, HlyD 437712 4017516 Sden_0382 Shewanella denitrificans OS217 Type I secretion membrane fusion protein, HlyD YP_561400.1 436330 R 318161 CDS YP_561401.1 91791750 4017517 complement(437702..439885) 1 NC_007954.1 ABC transporter related 439885 4017517 Sden_0383 Shewanella denitrificans OS217 ABC transporter related YP_561401.1 437702 R 318161 CDS YP_561402.1 91791751 4017518 complement(439984..452841) 1 NC_007954.1 hypothetical protein 452841 4017518 Sden_0384 Shewanella denitrificans OS217 hypothetical protein YP_561402.1 439984 R 318161 CDS YP_561403.1 91791752 4017519 complement(453185..454375) 1 NC_007954.1 HemY-like protein 454375 4017519 Sden_0385 Shewanella denitrificans OS217 HemY-like protein YP_561403.1 453185 R 318161 CDS YP_561404.1 91791753 4017520 complement(454372..455583) 1 NC_007954.1 hypothetical protein 455583 4017520 Sden_0386 Shewanella denitrificans OS217 hypothetical protein YP_561404.1 454372 R 318161 CDS YP_561405.1 91791754 4017521 complement(455744..456460) 1 NC_007954.1 uroporphyrinogen III synthase HEM4 456460 4017521 Sden_0387 Shewanella denitrificans OS217 uroporphyrinogen III synthase HEM4 YP_561405.1 455744 R 318161 CDS YP_561406.1 91791755 4017522 complement(456537..457484) 1 NC_007954.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 457484 hemC 4017522 hemC Shewanella denitrificans OS217 porphobilinogen deaminase YP_561406.1 456537 R 318161 CDS YP_561407.1 91791756 4017523 complement(457673..458008) 1 NC_007954.1 frataxin-like protein 458008 4017523 Sden_0389 Shewanella denitrificans OS217 frataxin-like protein YP_561407.1 457673 R 318161 CDS YP_561408.1 91791757 4017524 458293..459537 1 NC_007954.1 diaminopimelate decarboxylase 459537 4017524 Sden_0390 Shewanella denitrificans OS217 diaminopimelate decarboxylase YP_561408.1 458293 D 318161 CDS YP_561409.1 91791758 4017525 459600..460427 1 NC_007954.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 460427 dapF 4017525 dapF Shewanella denitrificans OS217 diaminopimelate epimerase YP_561409.1 459600 D 318161 CDS YP_561410.1 91791759 4017526 460577..461197 1 NC_007954.1 hypothetical protein 461197 4017526 Sden_0392 Shewanella denitrificans OS217 hypothetical protein YP_561410.1 460577 D 318161 CDS YP_561411.1 91791760 4017527 461274..462239 1 NC_007954.1 tyrosine recombinase XerC 462239 4017527 Sden_0393 Shewanella denitrificans OS217 tyrosine recombinase XerC YP_561411.1 461274 D 318161 CDS YP_561412.1 91791761 4017528 462236..462949 1 NC_007954.1 HAD family hydrolase 462949 4017528 Sden_0394 Shewanella denitrificans OS217 HAD family hydrolase YP_561412.1 462236 D 318161 CDS YP_561413.1 91791762 4017141 complement(462985..463488) 1 NC_007954.1 divergent AAA region 463488 4017141 Sden_0395 Shewanella denitrificans OS217 divergent AAA region YP_561413.1 462985 R 318161 CDS YP_561414.1 91791763 4017143 complement(464657..465145) 1 NC_007954.1 kelch repeat-containing protein 465145 4017143 Sden_0397 Shewanella denitrificans OS217 kelch repeat-containing protein YP_561414.1 464657 R 318161 CDS YP_561415.1 91791764 4017144 complement(465147..465380) 1 NC_007954.1 hypothetical protein 465380 4017144 Sden_0398 Shewanella denitrificans OS217 hypothetical protein YP_561415.1 465147 R 318161 CDS YP_561416.1 91791765 4017145 465493..466359 1 NC_007954.1 threonine dehydratase, biosynthetic 466359 4017145 Sden_0399 Shewanella denitrificans OS217 threonine dehydratase, biosynthetic YP_561416.1 465493 D 318161 CDS YP_561417.1 91791766 4017146 466554..467162 1 NC_007954.1 Abi-like protein 467162 4017146 Sden_0400 Shewanella denitrificans OS217 Abi-like protein YP_561417.1 466554 D 318161 CDS YP_561418.1 91791767 4017147 complement(467151..468092) 1 NC_007954.1 integrase catalytic subunit 468092 4017147 Sden_0401 Shewanella denitrificans OS217 integrase catalytic subunit YP_561418.1 467151 R 318161 CDS YP_561419.1 91791768 4017149 complement(469009..469263) 1 NC_007954.1 hypothetical protein 469263 4017149 Sden_0403 Shewanella denitrificans OS217 hypothetical protein YP_561419.1 469009 R 318161 CDS YP_561420.1 91791769 4017150 469806..470945 1 NC_007954.1 Serine--pyruvate transaminase 470945 4017150 Sden_0404 Shewanella denitrificans OS217 Serine--pyruvate transaminase YP_561420.1 469806 D 318161 CDS YP_561421.1 91791770 4017151 complement(471095..471349) 1 NC_007954.1 hypothetical protein 471349 4017151 Sden_0405 Shewanella denitrificans OS217 hypothetical protein YP_561421.1 471095 R 318161 CDS YP_561422.1 91791771 4017152 471508..473520 1 NC_007954.1 ATP-dependent DNA helicase Rep 473520 4017152 Sden_0406 Shewanella denitrificans OS217 ATP-dependent DNA helicase Rep YP_561422.1 471508 D 318161 CDS YP_561423.1 91791772 4017153 complement(473596..476217) 1 NC_007954.1 GGDEF domain-containing protein 476217 4017153 Sden_0407 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561423.1 473596 R 318161 CDS YP_561424.1 91791773 4017830 complement(477458..477967) 1 NC_007954.1 orphan protein 477967 4017830 Sden_0408 Shewanella denitrificans OS217 orphan protein YP_561424.1 477458 R 318161 CDS YP_561425.1 91791774 4017831 complement(477967..480414) 1 NC_007954.1 Zn-dependent aminopeptidase 480414 4017831 Sden_0409 Shewanella denitrificans OS217 Zn-dependent aminopeptidase YP_561425.1 477967 R 318161 CDS YP_561426.1 91791775 4017832 complement(480599..481354) 1 NC_007954.1 cation efflux protein 481354 4017832 Sden_0410 Shewanella denitrificans OS217 cation efflux protein YP_561426.1 480599 R 318161 CDS YP_561427.1 91791776 4017833 481515..482504 1 NC_007954.1 zinc-binding alcohol dehydrogenase 482504 4017833 Sden_0411 Shewanella denitrificans OS217 zinc-binding alcohol dehydrogenase YP_561427.1 481515 D 318161 CDS YP_561428.1 91791777 4017834 482830..483255 1 NC_007954.1 hypothetical protein 483255 4017834 Sden_0412 Shewanella denitrificans OS217 hypothetical protein YP_561428.1 482830 D 318161 CDS YP_561429.1 91791778 4017835 complement(483608..484636) 1 NC_007954.1 aldose 1-epimerase 484636 4017835 Sden_0413 Shewanella denitrificans OS217 aldose 1-epimerase YP_561429.1 483608 R 318161 CDS YP_561430.1 91791779 4017836 complement(484666..485811) 1 NC_007954.1 galactokinase 485811 4017836 Sden_0414 Shewanella denitrificans OS217 galactokinase YP_561430.1 484666 R 318161 CDS YP_561431.1 91791780 4017837 complement(486037..487716) 1 NC_007954.1 sodium/hydrogen exchanger 487716 4017837 Sden_0415 Shewanella denitrificans OS217 sodium/hydrogen exchanger YP_561431.1 486037 R 318161 CDS YP_561432.1 91791781 4017838 complement(487859..489733) 1 NC_007954.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 489733 dipZ 4017838 dipZ Shewanella denitrificans OS217 thiol:disulfide interchange protein precursor YP_561432.1 487859 R 318161 CDS YP_561433.1 91791782 4017839 complement(489730..490053) 1 NC_007954.1 CutA1 divalent ion tolerance protein 490053 4017839 Sden_0417 Shewanella denitrificans OS217 CutA1 divalent ion tolerance protein YP_561433.1 489730 R 318161 CDS YP_561434.1 91791783 4017840 490338..490991 1 NC_007954.1 FxsA cytoplasmic membrane protein 490991 4017840 Sden_0418 Shewanella denitrificans OS217 FxsA cytoplasmic membrane protein YP_561434.1 490338 D 318161 CDS YP_561435.1 91791784 4017841 complement(491176..491523) 1 NC_007954.1 hypothetical protein 491523 4017841 Sden_0419 Shewanella denitrificans OS217 hypothetical protein YP_561435.1 491176 R 318161 CDS YP_561436.1 91791785 4017842 complement(491573..492952) 1 NC_007954.1 MATE efflux family protein 492952 4017842 Sden_0420 Shewanella denitrificans OS217 MATE efflux family protein YP_561436.1 491573 R 318161 CDS YP_561437.1 91791786 4017843 493178..493468 1 NC_007954.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 493468 groES 4017843 groES Shewanella denitrificans OS217 co-chaperonin GroES YP_561437.1 493178 D 318161 CDS YP_561438.1 91791787 4017844 493528..495165 1 NC_007954.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 495165 groEL 4017844 groEL Shewanella denitrificans OS217 chaperonin GroEL YP_561438.1 493528 D 318161 CDS YP_561439.1 91791788 4017845 495624..496205 1 NC_007954.1 hypothetical protein 496205 4017845 Sden_0423 Shewanella denitrificans OS217 hypothetical protein YP_561439.1 495624 D 318161 CDS YP_561440.1 91791789 4017846 496341..496631 1 NC_007954.1 transposase IS3/IS911 496631 4017846 Sden_0424 Shewanella denitrificans OS217 transposase IS3/IS911 YP_561440.1 496341 D 318161 CDS YP_561441.1 91791790 4017959 496691..497500 1 NC_007954.1 integrase catalytic subunit 497500 4017959 Sden_0425 Shewanella denitrificans OS217 integrase catalytic subunit YP_561441.1 496691 D 318161 CDS YP_561442.1 91791791 4017960 complement(497477..497833) 1 NC_007954.1 Abi-like protein 497833 4017960 Sden_0426 Shewanella denitrificans OS217 Abi-like protein YP_561442.1 497477 R 318161 CDS YP_561443.1 91791792 4017961 498202..498450 1 NC_007954.1 transciptional regulator 498450 4017961 Sden_0427 Shewanella denitrificans OS217 transciptional regulator YP_561443.1 498202 D 318161 CDS YP_561444.1 91791793 4017963 complement(498966..500912) 1 NC_007954.1 GGDEF domain-containing protein 500912 4017963 Sden_0429 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561444.1 498966 R 318161 CDS YP_561445.1 91791794 4017964 complement(500909..502507) 1 NC_007954.1 GGDEF domain-containing protein 502507 4017964 Sden_0430 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561445.1 500909 R 318161 CDS YP_561446.1 91791795 4017965 complement(502500..502937) 1 NC_007954.1 hypothetical protein 502937 4017965 Sden_0431 Shewanella denitrificans OS217 hypothetical protein YP_561446.1 502500 R 318161 CDS YP_561447.1 91791796 4017966 complement(502937..504181) 1 NC_007954.1 hypothetical protein 504181 4017966 Sden_0432 Shewanella denitrificans OS217 hypothetical protein YP_561447.1 502937 R 318161 CDS YP_561448.1 91791797 4017967 504413..504568 1 NC_007954.1 Cro/CI family transcriptional regulator 504568 4017967 Sden_0433 Shewanella denitrificans OS217 Cro/CI family transcriptional regulator YP_561448.1 504413 D 318161 CDS YP_561449.1 91791798 4017968 complement(504695..505603) 1 NC_007954.1 TonB-like protein 505603 4017968 Sden_0434 Shewanella denitrificans OS217 TonB-like protein YP_561449.1 504695 R 318161 CDS YP_561450.1 91791799 4017969 complement(505627..505893) 1 NC_007954.1 hypothetical protein 505893 4017969 Sden_0435 Shewanella denitrificans OS217 hypothetical protein YP_561450.1 505627 R 318161 CDS YP_561451.1 91791800 4017970 complement(506071..506559) 1 NC_007954.1 hypothetical protein 506559 4017970 Sden_0436 Shewanella denitrificans OS217 hypothetical protein YP_561451.1 506071 R 318161 CDS YP_561452.1 91791801 4017971 complement(506724..509012) 1 NC_007954.1 transcriptional regulatory protein-like protein 509012 4017971 Sden_0437 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_561452.1 506724 R 318161 CDS YP_561453.1 91791802 4017972 509271..510155 1 NC_007954.1 WD-40-like beta propeller repeat-containing protein 510155 4017972 Sden_0438 Shewanella denitrificans OS217 WD-40-like beta propeller repeat-containing protein YP_561453.1 509271 D 318161 CDS YP_561454.1 91791803 4017973 510180..511100 1 NC_007954.1 WD-40-like beta propeller repeat-containing protein 511100 4017973 Sden_0439 Shewanella denitrificans OS217 WD-40-like beta propeller repeat-containing protein YP_561454.1 510180 D 318161 CDS YP_561455.1 91791804 4017974 complement(511241..511519) 1 NC_007954.1 hypothetical protein 511519 4017974 Sden_0440 Shewanella denitrificans OS217 hypothetical protein YP_561455.1 511241 R 318161 CDS YP_561456.1 91791805 4017975 complement(511721..512440) 1 NC_007954.1 cold-shock protein, DNA-binding 512440 4017975 Sden_0441 Shewanella denitrificans OS217 cold-shock protein, DNA-binding YP_561456.1 511721 R 318161 CDS YP_561457.1 91791806 4017976 complement(512694..513773) 1 NC_007954.1 choloylglycine hydrolase 513773 4017976 Sden_0442 Shewanella denitrificans OS217 choloylglycine hydrolase YP_561457.1 512694 R 318161 CDS YP_561458.1 91791807 4017977 513867..514880 1 NC_007954.1 GGDEF domain-containing protein 514880 4017977 Sden_0443 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561458.1 513867 D 318161 CDS YP_561459.1 91791808 4017978 complement(515109..515414) 1 NC_007954.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 515414 fis 4017978 fis Shewanella denitrificans OS217 DNA-binding protein Fis YP_561459.1 515109 R 318161 CDS YP_561460.1 91791809 4017216 complement(515431..516399) 1 NC_007954.1 dihydrouridine synthase TIM-barrel protein nifR3 516399 4017216 Sden_0445 Shewanella denitrificans OS217 dihydrouridine synthase TIM-barrel protein nifR3 YP_561460.1 515431 R 318161 CDS YP_561461.1 91791810 4017217 complement(516676..517557) 1 NC_007954.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 517557 prmA 4017217 prmA Shewanella denitrificans OS217 ribosomal protein L11 methyltransferase YP_561461.1 516676 R 318161 CDS YP_561462.1 91791811 4017218 complement(517684..518949) 1 NC_007954.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 518949 rho 4017218 rho Shewanella denitrificans OS217 transcription termination factor Rho YP_561462.1 517684 R 318161 CDS YP_561463.1 91791812 4017219 complement(519163..519489) 1 NC_007954.1 thioredoxin 519489 4017219 Sden_0448 Shewanella denitrificans OS217 thioredoxin YP_561463.1 519163 R 318161 CDS YP_561464.1 91791813 4017220 519642..520940 1 NC_007954.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 520940 4017220 Sden_0449 Shewanella denitrificans OS217 ATP-dependent RNA helicase RhlB YP_561464.1 519642 D 318161 CDS YP_561465.1 91791814 4017221 520941..521873 1 NC_007954.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 521873 4017221 Sden_0450 Shewanella denitrificans OS217 guanosine-5'-triphosphate,3'-diphosphate diphosphatase YP_561465.1 520941 D 318161 CDS YP_561466.1 91791815 4017222 complement(521977..522384) 1 NC_007954.1 hypothetical protein 522384 4017222 Sden_0451 Shewanella denitrificans OS217 hypothetical protein YP_561466.1 521977 R 318161 CDS YP_561467.1 91791816 4017223 complement(522384..523394) 1 NC_007954.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 523394 4017223 Sden_0452 Shewanella denitrificans OS217 delta-aminolevulinic acid dehydratase YP_561467.1 522384 R 318161 CDS YP_561468.1 91791817 4017224 complement(523412..525337) 1 NC_007954.1 GGDEF domain-containing protein 525337 4017224 Sden_0453 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561468.1 523412 R 318161 CDS YP_561469.1 91791818 4017225 complement(525334..526134) 1 NC_007954.1 TatD-related deoxyribonuclease 526134 4017225 Sden_0454 Shewanella denitrificans OS217 TatD-related deoxyribonuclease YP_561469.1 525334 R 318161 CDS YP_561470.1 91791819 4017226 complement(526135..526644) 1 NC_007954.1 hypothetical protein 526644 4017226 Sden_0455 Shewanella denitrificans OS217 hypothetical protein YP_561470.1 526135 R 318161 CDS YP_561471.1 91791820 4017227 complement(526709..527494) 1 NC_007954.1 Sec-independent protein translocase TatC 527494 4017227 Sden_0456 Shewanella denitrificans OS217 Sec-independent protein translocase TatC YP_561471.1 526709 R 318161 CDS YP_561472.1 91791821 4017228 complement(527498..527896) 1 NC_007954.1 twin-arginine translocation protein TatB 527896 4017228 Sden_0457 Shewanella denitrificans OS217 twin-arginine translocation protein TatB YP_561472.1 527498 R 318161 CDS YP_561473.1 91791822 4017229 complement(527903..528142) 1 NC_007954.1 twin arginine-targeting protein translocase 528142 4017229 Sden_0458 Shewanella denitrificans OS217 twin arginine-targeting protein translocase YP_561473.1 527903 R 318161 CDS YP_561474.1 91791823 4017230 complement(528246..529895) 1 NC_007954.1 2-polyprenylphenol 6-hydroxylase 529895 4017230 Sden_0459 Shewanella denitrificans OS217 2-polyprenylphenol 6-hydroxylase YP_561474.1 528246 R 318161 CDS YP_561475.1 91791824 4017231 complement(529892..530512) 1 NC_007954.1 hypothetical protein 530512 4017231 Sden_0460 Shewanella denitrificans OS217 hypothetical protein YP_561475.1 529892 R 318161 CDS YP_561476.1 91791825 4017232 complement(530512..531267) 1 NC_007954.1 ubiquinone/menaquinone biosynthesis methyltransferases 531267 4017232 Sden_0461 Shewanella denitrificans OS217 ubiquinone/menaquinone biosynthesis methyltransferases YP_561476.1 530512 R 318161 CDS YP_561477.1 91791826 4017233 complement(531373..532389) 1 NC_007954.1 arginase/agmatinase/formiminoglutamase 532389 4017233 Sden_0462 Shewanella denitrificans OS217 arginase/agmatinase/formiminoglutamase YP_561477.1 531373 R 318161 CDS YP_561478.1 91791827 4017234 complement(532553..533038) 1 NC_007954.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 533038 4017234 Sden_0463 Shewanella denitrificans OS217 ribonuclease activity regulator protein RraA YP_561478.1 532553 R 318161 CDS YP_561479.1 91791828 4016647 533413..533667 1 NC_007954.1 hypothetical protein 533667 4016647 Sden_0464 Shewanella denitrificans OS217 hypothetical protein YP_561479.1 533413 D 318161 CDS YP_561480.1 91791829 4016648 533908..534507 1 NC_007954.1 phosphoesterase, PA-phosphatase related 534507 4016648 Sden_0465 Shewanella denitrificans OS217 phosphoesterase, PA-phosphatase related YP_561480.1 533908 D 318161 CDS YP_561481.1 91791830 4016649 534552..535607 1 NC_007954.1 hypothetical protein 535607 4016649 Sden_0466 Shewanella denitrificans OS217 hypothetical protein YP_561481.1 534552 D 318161 CDS YP_561482.1 91791831 4016650 complement(535765..536232) 1 NC_007954.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 536232 4016650 Sden_0467 Shewanella denitrificans OS217 anti-RNA polymerase sigma 70 factor YP_561482.1 535765 R 318161 CDS YP_561483.1 91791832 4016651 536786..537850 1 NC_007954.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 537850 hemE 4016651 hemE Shewanella denitrificans OS217 uroporphyrinogen decarboxylase YP_561483.1 536786 D 318161 CDS YP_561484.1 91791833 4016652 538084..539430 1 NC_007954.1 glycerophosphoryl diester phosphodiesterase 539430 4016652 Sden_0469 Shewanella denitrificans OS217 glycerophosphoryl diester phosphodiesterase YP_561484.1 538084 D 318161 CDS YP_561485.1 91791834 4016653 539772..541763 1 NC_007954.1 TonB-dependent copper receptor 541763 4016653 Sden_0470 Shewanella denitrificans OS217 TonB-dependent copper receptor YP_561485.1 539772 D 318161 CDS YP_561486.1 91791835 4016654 complement(541895..543745) 1 NC_007954.1 beta-lactamase 543745 4016654 Sden_0471 Shewanella denitrificans OS217 beta-lactamase YP_561486.1 541895 R 318161 CDS YP_561487.1 91791836 4016655 complement(543804..544385) 1 NC_007954.1 hypothetical protein 544385 4016655 Sden_0472 Shewanella denitrificans OS217 hypothetical protein YP_561487.1 543804 R 318161 CDS YP_561488.1 91791837 4016656 complement(544388..544717) 1 NC_007954.1 transcriptional regulator PadR-like protein 544717 4016656 Sden_0473 Shewanella denitrificans OS217 transcriptional regulator PadR-like protein YP_561488.1 544388 R 318161 CDS YP_561489.1 91791838 4016657 complement(544986..547073) 1 NC_007954.1 ABC transporter related 547073 4016657 Sden_0474 Shewanella denitrificans OS217 ABC transporter related YP_561489.1 544986 R 318161 CDS YP_561490.1 91791839 4016658 complement(547127..547555) 1 NC_007954.1 hypothetical protein 547555 4016658 Sden_0475 Shewanella denitrificans OS217 hypothetical protein YP_561490.1 547127 R 318161 CDS YP_561491.1 91791840 4016659 complement(547921..549162) 1 NC_007954.1 secretion protein HlyD 549162 4016659 Sden_0476 Shewanella denitrificans OS217 secretion protein HlyD YP_561491.1 547921 R 318161 CDS YP_561492.1 91791841 4016660 complement(549598..550722) 1 NC_007954.1 transposase, IS4 550722 4016660 Sden_0477 Shewanella denitrificans OS217 transposase, IS4 YP_561492.1 549598 R 318161 CDS YP_561493.1 91791842 4016661 complement(550984..551904) 1 NC_007954.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 551904 4016661 Sden_0478 Shewanella denitrificans OS217 manganese-dependent inorganic pyrophosphatase YP_561493.1 550984 R 318161 CDS YP_561494.1 91791843 4016662 complement(552022..552486) 1 NC_007954.1 hypothetical protein 552486 4016662 Sden_0479 Shewanella denitrificans OS217 hypothetical protein YP_561494.1 552022 R 318161 CDS YP_561495.1 91791844 4016663 552795..553844 1 NC_007954.1 hypothetical protein 553844 4016663 Sden_0480 Shewanella denitrificans OS217 hypothetical protein YP_561495.1 552795 D 318161 CDS YP_561496.1 91791845 4016664 553997..554575 1 NC_007954.1 ATP-dependent protease La 554575 4016664 Sden_0481 Shewanella denitrificans OS217 ATP-dependent protease La YP_561496.1 553997 D 318161 CDS YP_561497.1 91791846 4016665 554658..555596 1 NC_007954.1 pseudouridine synthase 555596 4016665 Sden_0482 Shewanella denitrificans OS217 pseudouridine synthase YP_561497.1 554658 D 318161 CDS YP_561498.1 91791847 4016666 complement(555602..556510) 1 NC_007954.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 556510 ubiA 4016666 ubiA Shewanella denitrificans OS217 4-hydroxybenzoate octaprenyltransferase YP_561498.1 555602 R 318161 CDS YP_561499.1 91791848 4017774 complement(556553..558721) 1 NC_007954.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 558721 uvrD 4017774 uvrD Shewanella denitrificans OS217 DNA-dependent helicase II YP_561499.1 556553 R 318161 CDS YP_561500.1 91791849 4017775 complement(558779..559054) 1 NC_007954.1 phosphotransferase system, HPr 559054 4017775 Sden_0485 Shewanella denitrificans OS217 phosphotransferase system, HPr YP_561500.1 558779 R 318161 CDS YP_561501.1 91791850 4017776 complement(559076..559930) 1 NC_007954.1 hypothetical protein 559930 4017776 Sden_0486 Shewanella denitrificans OS217 hypothetical protein YP_561501.1 559076 R 318161 CDS YP_561502.1 91791851 4017777 complement(559927..560370) 1 NC_007954.1 PTS IIA-like nitrogen-regulatory protein PtsN 560370 4017777 Sden_0487 Shewanella denitrificans OS217 PTS IIA-like nitrogen-regulatory protein PtsN YP_561502.1 559927 R 318161 CDS YP_561503.1 91791852 4017778 complement(560373..560660) 1 NC_007954.1 ribosomal subunit interface protein 560660 4017778 Sden_0488 Shewanella denitrificans OS217 ribosomal subunit interface protein YP_561503.1 560373 R 318161 CDS YP_561504.1 91791853 4017779 complement(560687..562168) 1 NC_007954.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 562168 4017779 Sden_0489 Shewanella denitrificans OS217 RNA polymerase factor sigma-54 YP_561504.1 560687 R 318161 CDS YP_561505.1 91791854 4017780 complement(562255..562986) 1 NC_007954.1 ABC transporter related 562986 4017780 Sden_0490 Shewanella denitrificans OS217 ABC transporter related YP_561505.1 562255 R 318161 CDS YP_561506.1 91791855 4017781 complement(562983..563537) 1 NC_007954.1 OstA-like protein 563537 4017781 Sden_0491 Shewanella denitrificans OS217 OstA-like protein YP_561506.1 562983 R 318161 CDS YP_561507.1 91791856 4017782 complement(563524..564084) 1 NC_007954.1 hypothetical protein 564084 4017782 Sden_0492 Shewanella denitrificans OS217 hypothetical protein YP_561507.1 563524 R 318161 CDS YP_561508.1 91791857 4017783 complement(564081..564632) 1 NC_007954.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 564632 4017783 Sden_0493 Shewanella denitrificans OS217 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_561508.1 564081 R 318161 CDS YP_561509.1 91791858 4017784 complement(564634..565611) 1 NC_007954.1 KpsF/GutQ family protein 565611 4017784 Sden_0494 Shewanella denitrificans OS217 KpsF/GutQ family protein YP_561509.1 564634 R 318161 CDS YP_561510.1 91791859 4017785 complement(565676..566638) 1 NC_007954.1 K+-dependent Na+/Ca+ exchanger related-protein 566638 4017785 Sden_0495 Shewanella denitrificans OS217 K+-dependent Na+/Ca+ exchanger related-protein YP_561510.1 565676 R 318161 CDS YP_561511.1 91791860 4017786 566822..567643 1 NC_007954.1 ABC transporter related 567643 4017786 Sden_0496 Shewanella denitrificans OS217 ABC transporter related YP_561511.1 566822 D 318161 CDS YP_561512.1 91791861 4017787 567636..568433 1 NC_007954.1 hypothetical protein 568433 4017787 Sden_0497 Shewanella denitrificans OS217 hypothetical protein YP_561512.1 567636 D 318161 CDS YP_561513.1 91791862 4017788 568521..568994 1 NC_007954.1 hypothetical protein 568994 4017788 Sden_0498 Shewanella denitrificans OS217 hypothetical protein YP_561513.1 568521 D 318161 CDS YP_561514.1 91791863 4017789 569006..569659 1 NC_007954.1 toluene tolerance 569659 4017789 Sden_0499 Shewanella denitrificans OS217 toluene tolerance YP_561514.1 569006 D 318161 CDS YP_561515.1 91791864 4017790 569656..569952 1 NC_007954.1 SpoIIAA family protein 569952 4017790 Sden_0500 Shewanella denitrificans OS217 SpoIIAA family protein YP_561515.1 569656 D 318161 CDS YP_561516.1 91791865 4017791 570014..570265 1 NC_007954.1 BolA-like protein 570265 4017791 Sden_0501 Shewanella denitrificans OS217 BolA-like protein YP_561516.1 570014 D 318161 CDS YP_561517.1 91791866 4017792 570281..571540 1 NC_007954.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 571540 4017792 Sden_0502 Shewanella denitrificans OS217 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_561517.1 570281 D 318161 CDS YP_561518.1 91791867 4017102 complement(571655..572731) 1 NC_007954.1 peptidase S1C, DegS 572731 4017102 Sden_0503 Shewanella denitrificans OS217 peptidase S1C, DegS YP_561518.1 571655 R 318161 CDS YP_561519.1 91791868 4017103 complement(572895..574256) 1 NC_007954.1 peptidase S1C, Do 574256 4017103 Sden_0504 Shewanella denitrificans OS217 peptidase S1C, Do YP_561519.1 572895 R 318161 CDS YP_561520.1 91791869 4017104 574564..575676 1 NC_007954.1 AFG1-like ATPase 575676 4017104 Sden_0505 Shewanella denitrificans OS217 AFG1-like ATPase YP_561520.1 574564 D 318161 CDS YP_561521.1 91791870 4017105 575953..576381 1 NC_007954.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 576381 rplM 4017105 rplM Shewanella denitrificans OS217 50S ribosomal protein L13 YP_561521.1 575953 D 318161 CDS YP_561522.1 91791871 4017106 576396..576788 1 NC_007954.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 576788 rpsI 4017106 rpsI Shewanella denitrificans OS217 30S ribosomal protein S9 YP_561522.1 576396 D 318161 CDS YP_561523.1 91791872 4017107 576795..577067 1 NC_007954.1 hypothetical protein 577067 4017107 Sden_0508 Shewanella denitrificans OS217 hypothetical protein YP_561523.1 576795 D 318161 CDS YP_561524.1 91791873 4017108 577135..578430 1 NC_007954.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 578430 4017108 Sden_0509 Shewanella denitrificans OS217 adenylosuccinate synthetase YP_561524.1 577135 D 318161 CDS YP_561525.1 91791874 4017109 578546..579163 1 NC_007954.1 Sel1 579163 4017109 Sden_0510 Shewanella denitrificans OS217 Sel1 YP_561525.1 578546 D 318161 CDS YP_561526.1 91791875 4017110 579199..581652 1 NC_007954.1 ribonuclease R 581652 4017110 Sden_0511 Shewanella denitrificans OS217 ribonuclease R YP_561526.1 579199 D 318161 CDS YP_561527.1 91791876 4017111 581674..582414 1 NC_007954.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 582414 4017111 Sden_0512 Shewanella denitrificans OS217 23S rRNA (guanosine-2'-O-)-methyltransferase YP_561527.1 581674 D 318161 CDS YP_561528.1 91791877 4017112 complement(582500..583879) 1 NC_007954.1 major facilitator transporter 583879 4017112 Sden_0513 Shewanella denitrificans OS217 major facilitator transporter YP_561528.1 582500 R 318161 CDS YP_561529.1 91791878 4017113 complement(583973..584728) 1 NC_007954.1 hypothetical protein 584728 4017113 Sden_0514 Shewanella denitrificans OS217 hypothetical protein YP_561529.1 583973 R 318161 CDS YP_561530.1 91791879 4017114 584952..585344 1 NC_007954.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 585344 rpsF 4017114 rpsF Shewanella denitrificans OS217 30S ribosomal protein S6 YP_561530.1 584952 D 318161 CDS YP_561531.1 91791880 4017115 585353..585655 1 NC_007954.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 585655 4017115 Sden_0516 Shewanella denitrificans OS217 primosomal replication protein N YP_561531.1 585353 D 318161 CDS YP_561532.1 91791881 4017116 585668..585895 1 NC_007954.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 585895 rpsR 4017116 rpsR Shewanella denitrificans OS217 30S ribosomal protein S18 YP_561532.1 585668 D 318161 CDS YP_561533.1 91791882 4017117 585936..586388 1 NC_007954.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 586388 rplI 4017117 rplI Shewanella denitrificans OS217 50S ribosomal protein L9 YP_561533.1 585936 D 318161 CDS YP_561534.1 91791883 4017118 complement(586461..586736) 1 NC_007954.1 hypothetical protein 586736 4017118 Sden_0519 Shewanella denitrificans OS217 hypothetical protein YP_561534.1 586461 R 318161 CDS YP_561535.1 91791884 4017119 complement(587850..590045) 1 NC_007954.1 hypothetical protein 590045 4017119 Sden_0520 Shewanella denitrificans OS217 hypothetical protein YP_561535.1 587850 R 318161 CDS YP_561536.1 91791885 4017120 590199..591605 1 NC_007954.1 replicative DNA helicase 591605 4017120 Sden_0521 Shewanella denitrificans OS217 replicative DNA helicase YP_561536.1 590199 D 318161 CDS YP_561537.1 91791886 4017121 591695..592786 1 NC_007954.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 592786 alr 4017121 alr Shewanella denitrificans OS217 alanine racemase YP_561537.1 591695 D 318161 CDS YP_561538.1 91791887 4016857 complement(592873..593340) 1 NC_007954.1 CheC-like protein 593340 4016857 Sden_0523 Shewanella denitrificans OS217 CheC-like protein YP_561538.1 592873 R 318161 CDS YP_561539.1 91791888 4016858 593682..594551 1 NC_007954.1 MaoC-like dehydratase 594551 4016858 Sden_0524 Shewanella denitrificans OS217 MaoC-like dehydratase YP_561539.1 593682 D 318161 CDS YP_561540.1 91791889 4016859 594604..594969 1 NC_007954.1 hypothetical protein 594969 4016859 Sden_0525 Shewanella denitrificans OS217 hypothetical protein YP_561540.1 594604 D 318161 CDS YP_561541.1 91791890 4016860 595050..595409 1 NC_007954.1 hypothetical protein 595409 4016860 Sden_0526 Shewanella denitrificans OS217 hypothetical protein YP_561541.1 595050 D 318161 CDS YP_561542.1 91791891 4016861 595482..596720 1 NC_007954.1 hypothetical protein 596720 4016861 Sden_0527 Shewanella denitrificans OS217 hypothetical protein YP_561542.1 595482 D 318161 CDS YP_561543.1 91791892 4016862 596704..597651 1 NC_007954.1 periplasmic solute binding protein 597651 4016862 Sden_0528 Shewanella denitrificans OS217 periplasmic solute binding protein YP_561543.1 596704 D 318161 CDS YP_561544.1 91791893 4016863 597657..598448 1 NC_007954.1 hypothetical protein 598448 4016863 Sden_0529 Shewanella denitrificans OS217 hypothetical protein YP_561544.1 597657 D 318161 CDS YP_561545.1 91791894 4016864 598540..599286 1 NC_007954.1 1-acyl-sn-glycerol-3-phosphate acyltransferases 599286 4016864 Sden_0530 Shewanella denitrificans OS217 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_561545.1 598540 D 318161 CDS YP_561546.1 91791895 4016865 599328..599717 1 NC_007954.1 hypothetical protein 599717 4016865 Sden_0531 Shewanella denitrificans OS217 hypothetical protein YP_561546.1 599328 D 318161 CDS YP_561547.1 91791896 4016866 complement(599795..600760) 1 NC_007954.1 GGDEF domain-containing protein 600760 4016866 Sden_0532 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561547.1 599795 R 318161 CDS YP_561548.1 91791897 4016867 complement(600781..601776) 1 NC_007954.1 response regulator receiver 601776 4016867 Sden_0533 Shewanella denitrificans OS217 response regulator receiver YP_561548.1 600781 R 318161 CDS YP_561549.1 91791898 4016868 602102..602908 1 NC_007954.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 602908 4016868 Sden_0534 Shewanella denitrificans OS217 enoyl-CoA hydratase YP_561549.1 602102 D 318161 CDS YP_561550.1 91791899 4016869 complement(602996..603874) 1 NC_007954.1 hypothetical protein 603874 4016869 Sden_0535 Shewanella denitrificans OS217 hypothetical protein YP_561550.1 602996 R 318161 CDS YP_561551.1 91791900 4016870 complement(604053..606959) 1 NC_007954.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 606959 4016870 Sden_0536 Shewanella denitrificans OS217 ATP-dependent helicase HepA YP_561551.1 604053 R 318161 CDS YP_561552.1 91791901 4016871 607374..608768 1 NC_007954.1 PhoH-like protein 608768 4016871 Sden_0537 Shewanella denitrificans OS217 PhoH-like protein YP_561552.1 607374 D 318161 CDS YP_561553.1 91791902 4016872 609025..612726 1 NC_007954.1 ATP-binding region, ATPase-like protein 612726 4016872 Sden_0538 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561553.1 609025 D 318161 CDS YP_561554.1 91791903 4016873 complement(612728..614530) 1 NC_007954.1 protein kinase 614530 4016873 Sden_0539 Shewanella denitrificans OS217 protein kinase YP_561554.1 612728 R 318161 CDS YP_561555.1 91791904 4016874 614684..615046 1 NC_007954.1 hypothetical protein 615046 4016874 Sden_0540 Shewanella denitrificans OS217 hypothetical protein YP_561555.1 614684 D 318161 CDS YP_561556.1 91791905 4016875 615146..615802 1 NC_007954.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 615802 4016875 Sden_0541 Shewanella denitrificans OS217 thiopurine S-methyltransferase YP_561556.1 615146 D 318161 CDS YP_561557.1 91791906 4016915 615955..616749 1 NC_007954.1 UBA/THIF-type NAD/FAD binding fold 616749 4016915 Sden_0542 Shewanella denitrificans OS217 UBA/THIF-type NAD/FAD binding fold YP_561557.1 615955 D 318161 CDS YP_561558.1 91791907 4016916 complement(616756..618360) 1 NC_007954.1 ATP-binding region, ATPase-like protein 618360 4016916 Sden_0543 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561558.1 616756 R 318161 CDS YP_561559.1 91791908 4016917 618556..619167 1 NC_007954.1 hypothetical protein 619167 4016917 Sden_0544 Shewanella denitrificans OS217 hypothetical protein YP_561559.1 618556 D 318161 CDS YP_561560.1 91791909 4016919 620416..620739 1 NC_007954.1 hypothetical protein 620739 4016919 Sden_0545 Shewanella denitrificans OS217 hypothetical protein YP_561560.1 620416 D 318161 CDS YP_561561.1 91791910 4016920 620749..621240 1 NC_007954.1 orphan protein 621240 4016920 Sden_0546 Shewanella denitrificans OS217 orphan protein YP_561561.1 620749 D 318161 CDS YP_561562.1 91791911 4016921 621251..621499 1 NC_007954.1 hypothetical protein 621499 4016921 Sden_0547 Shewanella denitrificans OS217 hypothetical protein YP_561562.1 621251 D 318161 CDS YP_561563.1 91791912 4016924 complement(623221..623820) 1 NC_007954.1 regulatory protein, TetR 623820 4016924 Sden_0550 Shewanella denitrificans OS217 regulatory protein, TetR YP_561563.1 623221 R 318161 CDS YP_561564.1 91791913 4016925 623922..624443 1 NC_007954.1 HPP 624443 4016925 Sden_0551 Shewanella denitrificans OS217 HPP YP_561564.1 623922 D 318161 CDS YP_561565.1 91791914 4016926 624741..625679 1 NC_007954.1 aminotransferase, class V 625679 4016926 Sden_0552 Shewanella denitrificans OS217 aminotransferase, class V YP_561565.1 624741 D 318161 CDS YP_561566.1 91791915 4016927 complement(625836..628409) 1 NC_007954.1 Beta-N-acetylhexosaminidase 628409 4016927 Sden_0553 Shewanella denitrificans OS217 Beta-N-acetylhexosaminidase YP_561566.1 625836 R 318161 CDS YP_561567.1 91791916 4016928 629035..629619 1 NC_007954.1 hypothetical protein 629619 4016928 Sden_0554 Shewanella denitrificans OS217 hypothetical protein YP_561567.1 629035 D 318161 CDS YP_561568.1 91791917 4016929 629944..630804 1 NC_007954.1 MltA-interacting MipA 630804 4016929 Sden_0555 Shewanella denitrificans OS217 MltA-interacting MipA YP_561568.1 629944 D 318161 CDS YP_561569.1 91791918 4016930 630810..631238 1 NC_007954.1 hypothetical protein 631238 4016930 Sden_0556 Shewanella denitrificans OS217 hypothetical protein YP_561569.1 630810 D 318161 CDS YP_561570.1 91791919 4016931 631241..631945 1 NC_007954.1 response regulator receiver 631945 4016931 Sden_0557 Shewanella denitrificans OS217 response regulator receiver YP_561570.1 631241 D 318161 CDS YP_561571.1 91791920 4016932 631942..633237 1 NC_007954.1 ATP-binding region, ATPase-like protein 633237 4016932 Sden_0558 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561571.1 631942 D 318161 CDS YP_561572.1 91791921 4016933 complement(633280..634278) 1 NC_007954.1 hypothetical protein 634278 4016933 Sden_0559 Shewanella denitrificans OS217 hypothetical protein YP_561572.1 633280 R 318161 CDS YP_561573.1 91791922 4016533 complement(634384..634866) 1 NC_007954.1 hypothetical protein 634866 4016533 Sden_0560 Shewanella denitrificans OS217 hypothetical protein YP_561573.1 634384 R 318161 CDS YP_561574.1 91791923 4016534 complement(634886..635659) 1 NC_007954.1 MltA-interacting MipA 635659 4016534 Sden_0561 Shewanella denitrificans OS217 MltA-interacting MipA YP_561574.1 634886 R 318161 CDS YP_561575.1 91791924 4016535 635979..636500 1 NC_007954.1 hypothetical protein 636500 4016535 Sden_0562 Shewanella denitrificans OS217 hypothetical protein YP_561575.1 635979 D 318161 CDS YP_561576.1 91791925 4016536 complement(636736..638772) 1 NC_007954.1 transcriptional regulatory protein-like protein 638772 4016536 Sden_0563 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_561576.1 636736 R 318161 CDS YP_561577.1 91791926 4016537 639096..639947 1 NC_007954.1 lipoprotein 639947 4016537 Sden_0564 Shewanella denitrificans OS217 lipoprotein YP_561577.1 639096 D 318161 CDS YP_561578.1 91791927 4016538 640513..641118 1 NC_007954.1 cell wall surface anchor family protein 641118 4016538 Sden_0565 Shewanella denitrificans OS217 cell wall surface anchor family protein YP_561578.1 640513 D 318161 CDS YP_561579.1 91791928 4016539 641213..642133 1 NC_007954.1 hypothetical protein 642133 4016539 Sden_0566 Shewanella denitrificans OS217 hypothetical protein YP_561579.1 641213 D 318161 CDS YP_561580.1 91791929 4016540 complement(642130..643527) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 643527 4016540 Sden_0567 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_561580.1 642130 R 318161 CDS YP_561581.1 91791930 4016541 643654..644142 1 NC_007954.1 sigma-70, region 4 type 2 644142 4016541 Sden_0568 Shewanella denitrificans OS217 sigma-70, region 4 type 2 YP_561581.1 643654 D 318161 CDS YP_561582.1 91791931 4016542 644139..644888 1 NC_007954.1 hypothetical protein 644888 4016542 Sden_0569 Shewanella denitrificans OS217 hypothetical protein YP_561582.1 644139 D 318161 CDS YP_561583.1 91791932 4016543 645027..645425 1 NC_007954.1 hypothetical protein 645425 4016543 Sden_0570 Shewanella denitrificans OS217 hypothetical protein YP_561583.1 645027 D 318161 CDS YP_561584.1 91791933 4016544 645531..646007 1 NC_007954.1 hypothetical protein 646007 4016544 Sden_0571 Shewanella denitrificans OS217 hypothetical protein YP_561584.1 645531 D 318161 CDS YP_561585.1 91791934 4016545 646407..648740 1 NC_007954.1 GGDEF domain-containing protein 648740 4016545 Sden_0572 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561585.1 646407 D 318161 CDS YP_561586.1 91791935 4016546 649527..649808 1 NC_007954.1 TonB-like protein 649808 4016546 Sden_0573 Shewanella denitrificans OS217 TonB-like protein YP_561586.1 649527 D 318161 CDS YP_561587.1 91791936 4016547 650014..650604 1 NC_007954.1 hypothetical protein 650604 4016547 Sden_0574 Shewanella denitrificans OS217 hypothetical protein YP_561587.1 650014 D 318161 CDS YP_561588.1 91791937 4016548 650744..651985 1 NC_007954.1 secretion protein HlyD 651985 4016548 Sden_0575 Shewanella denitrificans OS217 secretion protein HlyD YP_561588.1 650744 D 318161 CDS YP_561589.1 91791938 4016549 652017..655250 1 NC_007954.1 heavy metal efflux pump CzcA 655250 4016549 Sden_0576 Shewanella denitrificans OS217 heavy metal efflux pump CzcA YP_561589.1 652017 D 318161 CDS YP_561590.1 91791939 4016550 655483..655746 1 NC_007954.1 hypothetical protein 655746 4016550 Sden_0577 Shewanella denitrificans OS217 hypothetical protein YP_561590.1 655483 D 318161 CDS YP_561591.1 91791940 4016551 655984..656364 1 NC_007954.1 penicillinase repressor 656364 4016551 Sden_0578 Shewanella denitrificans OS217 penicillinase repressor YP_561591.1 655984 D 318161 CDS YP_561592.1 91791941 4016609 656391..658016 1 NC_007954.1 peptidase M56, BlaR1 658016 4016609 Sden_0579 Shewanella denitrificans OS217 peptidase M56, BlaR1 YP_561592.1 656391 D 318161 CDS YP_561593.1 91791942 4016610 658192..659604 1 NC_007954.1 membrane bound O-acyl transferase, MBOAT 659604 4016610 Sden_0580 Shewanella denitrificans OS217 membrane bound O-acyl transferase, MBOAT YP_561593.1 658192 D 318161 CDS YP_561594.1 91791943 4016611 659579..660874 1 NC_007954.1 hypothetical protein 660874 4016611 Sden_0581 Shewanella denitrificans OS217 hypothetical protein YP_561594.1 659579 D 318161 CDS YP_561595.1 91791944 4016612 complement(661252..663381) 1 NC_007954.1 TonB-dependent receptor, plug 663381 4016612 Sden_0582 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_561595.1 661252 R 318161 CDS YP_561596.1 91791945 4016613 complement(663507..663899) 1 NC_007954.1 ParB-like nuclease 663899 4016613 Sden_0583 Shewanella denitrificans OS217 ParB-like nuclease YP_561596.1 663507 R 318161 CDS YP_561597.1 91791946 4016614 complement(663889..665106) 1 NC_007954.1 Orn/DAP/Arg decarboxylase 2 665106 4016614 Sden_0584 Shewanella denitrificans OS217 Orn/DAP/Arg decarboxylase 2 YP_561597.1 663889 R 318161 CDS YP_561598.1 91791947 4016615 complement(665099..665878) 1 NC_007954.1 HpcH/HpaI aldolase 665878 4016615 Sden_0585 Shewanella denitrificans OS217 HpcH/HpaI aldolase YP_561598.1 665099 R 318161 CDS YP_561599.1 91791948 4016616 complement(665875..669321) 1 NC_007954.1 IucA/IucC 669321 4016616 Sden_0586 Shewanella denitrificans OS217 IucA/IucC YP_561599.1 665875 R 318161 CDS YP_561600.1 91791949 4016617 complement(669318..670496) 1 NC_007954.1 major facilitator transporter 670496 4016617 Sden_0587 Shewanella denitrificans OS217 major facilitator transporter YP_561600.1 669318 R 318161 CDS YP_561601.1 91791950 4016618 complement(670489..672183) 1 NC_007954.1 siderophore biosynthesis protein 672183 4016618 Sden_0588 Shewanella denitrificans OS217 siderophore biosynthesis protein YP_561601.1 670489 R 318161 CDS YP_561602.1 91791951 4016619 complement(672199..673212) 1 NC_007954.1 ornithine cyclodeaminase 673212 4016619 Sden_0589 Shewanella denitrificans OS217 ornithine cyclodeaminase YP_561602.1 672199 R 318161 CDS YP_561603.1 91791952 4016620 complement(673241..674251) 1 NC_007954.1 pyridoxal-5'-phosphate-dependent enzyme, beta subunit 674251 4016620 Sden_0590 Shewanella denitrificans OS217 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_561603.1 673241 R 318161 CDS YP_561604.1 91791953 4016621 complement(674594..675133) 1 NC_007954.1 hypothetical protein 675133 4016621 Sden_0591 Shewanella denitrificans OS217 hypothetical protein YP_561604.1 674594 R 318161 CDS YP_561605.1 91791954 4016622 complement(676167..677183) 1 NC_007954.1 transposase IS116/IS110/IS902 677183 4016622 Sden_0592 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_561605.1 676167 R 318161 CDS YP_561606.1 91791955 4016623 677345..677656 1 NC_007954.1 glycine betaine/choline/proline transport system permease protein 677656 4016623 Sden_0593 Shewanella denitrificans OS217 glycine betaine/choline/proline transport system permease protein YP_561606.1 677345 D 318161 CDS YP_561607.1 91791956 4016624 677653..678504 1 NC_007954.1 integrase catalytic subunit 678504 4016624 Sden_0594 Shewanella denitrificans OS217 integrase catalytic subunit YP_561607.1 677653 D 318161 CDS YP_561608.1 91791957 4016625 complement(679734..680108) 1 NC_007954.1 hypothetical protein 680108 4016625 Sden_0595 Shewanella denitrificans OS217 hypothetical protein YP_561608.1 679734 R 318161 CDS YP_561609.1 91791958 4016626 680712..681218 1 NC_007954.1 hypothetical protein 681218 4016626 Sden_0596 Shewanella denitrificans OS217 hypothetical protein YP_561609.1 680712 D 318161 CDS YP_561610.1 91791959 4016627 681222..682103 1 NC_007954.1 hypothetical protein 682103 4016627 Sden_0597 Shewanella denitrificans OS217 hypothetical protein YP_561610.1 681222 D 318161 CDS YP_561611.1 91791960 4016628 682614..683738 1 NC_007954.1 transposase, IS4 683738 4016628 Sden_0598 Shewanella denitrificans OS217 transposase, IS4 YP_561611.1 682614 D 318161 CDS YP_561612.1 91791961 4017013 683738..684001 1 NC_007954.1 hypothetical protein 684001 4017013 Sden_0599 Shewanella denitrificans OS217 hypothetical protein YP_561612.1 683738 D 318161 CDS YP_561613.1 91791962 4017014 complement(685061..687187) 1 NC_007954.1 hypothetical protein 687187 4017014 Sden_0600 Shewanella denitrificans OS217 hypothetical protein YP_561613.1 685061 R 318161 CDS YP_561614.1 91791963 4017015 687553..688941 1 NC_007954.1 ATP-binding region, ATPase-like protein 688941 4017015 Sden_0601 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561614.1 687553 D 318161 CDS YP_561615.1 91791964 4017016 688938..689489 1 NC_007954.1 response regulator receiver 689489 4017016 Sden_0602 Shewanella denitrificans OS217 response regulator receiver YP_561615.1 688938 D 318161 CDS YP_561616.1 91791965 4017017 689545..690504 1 NC_007954.1 lipase, class 3 690504 4017017 Sden_0603 Shewanella denitrificans OS217 lipase, class 3 YP_561616.1 689545 D 318161 CDS YP_561617.1 91791966 4017018 complement(690603..691763) 1 NC_007954.1 hypothetical protein 691763 4017018 Sden_0604 Shewanella denitrificans OS217 hypothetical protein YP_561617.1 690603 R 318161 CDS YP_561618.1 91791967 4017019 692028..692264 1 NC_007954.1 diguanylate cyclase 692264 4017019 Sden_0605 Shewanella denitrificans OS217 diguanylate cyclase YP_561618.1 692028 D 318161 CDS YP_561619.1 91791968 4017020 complement(692383..692793) 1 NC_007954.1 hypothetical protein 692793 4017020 Sden_0606 Shewanella denitrificans OS217 hypothetical protein YP_561619.1 692383 R 318161 CDS YP_561620.1 91791969 4017021 complement(692803..693879) 1 NC_007954.1 hypothetical protein 693879 4017021 Sden_0607 Shewanella denitrificans OS217 hypothetical protein YP_561620.1 692803 R 318161 CDS YP_561621.1 91791970 4017022 694114..694452 1 NC_007954.1 hypothetical protein 694452 4017022 Sden_0608 Shewanella denitrificans OS217 hypothetical protein YP_561621.1 694114 D 318161 CDS YP_561622.1 91791971 4017023 complement(694523..696655) 1 NC_007954.1 TonB-dependent siderophore receptor 696655 4017023 Sden_0609 Shewanella denitrificans OS217 TonB-dependent siderophore receptor YP_561622.1 694523 R 318161 CDS YP_561623.1 91791972 4017024 complement(696913..697692) 1 NC_007954.1 helix-turn-helix, AraC type 697692 4017024 Sden_0610 Shewanella denitrificans OS217 helix-turn-helix, AraC type YP_561623.1 696913 R 318161 CDS YP_561624.1 91791973 4017025 697796..698680 1 NC_007954.1 hypothetical protein 698680 4017025 Sden_0611 Shewanella denitrificans OS217 hypothetical protein YP_561624.1 697796 D 318161 CDS YP_561625.1 91791974 4017026 698843..699496 1 NC_007954.1 hypothetical protein 699496 4017026 Sden_0612 Shewanella denitrificans OS217 hypothetical protein YP_561625.1 698843 D 318161 CDS YP_561626.1 91791975 4017027 complement(699529..700263) 1 NC_007954.1 hypothetical protein 700263 4017027 Sden_0613 Shewanella denitrificans OS217 hypothetical protein YP_561626.1 699529 R 318161 CDS YP_561627.1 91791976 4017028 complement(700363..700677) 1 NC_007954.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 700677 4017028 Sden_0614 Shewanella denitrificans OS217 transcriptional repressor protein MetJ YP_561627.1 700363 R 318161 CDS YP_561628.1 91791977 4017029 700878..702050 1 NC_007954.1 O-succinylhomoserine (thiol)-lyase 702050 4017029 Sden_0615 Shewanella denitrificans OS217 O-succinylhomoserine (thiol)-lyase YP_561628.1 700878 D 318161 CDS YP_561629.1 91791978 4017030 702061..704502 1 NC_007954.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 704502 metL 4017030 metL Shewanella denitrificans OS217 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_561629.1 702061 D 318161 CDS YP_561630.1 91791979 4017031 704831..706318 1 NC_007954.1 amino acid carrier protein 706318 4017031 Sden_0617 Shewanella denitrificans OS217 amino acid carrier protein YP_561630.1 704831 D 318161 CDS YP_561631.1 91791980 4016993 complement(707148..708791) 1 NC_007954.1 PepSY-associated TM helix 708791 4016993 Sden_0618 Shewanella denitrificans OS217 PepSY-associated TM helix YP_561631.1 707148 R 318161 CDS YP_561632.1 91791981 4016994 complement(708788..709087) 1 NC_007954.1 hypothetical protein 709087 4016994 Sden_0619 Shewanella denitrificans OS217 hypothetical protein YP_561632.1 708788 R 318161 CDS YP_561633.1 91791982 4016995 complement(709084..709347) 1 NC_007954.1 hypothetical protein 709347 4016995 Sden_0620 Shewanella denitrificans OS217 hypothetical protein YP_561633.1 709084 R 318161 CDS YP_561634.1 91791983 4016996 709491..711551 1 NC_007954.1 TonB-dependent receptor 711551 4016996 Sden_0621 Shewanella denitrificans OS217 TonB-dependent receptor YP_561634.1 709491 D 318161 CDS YP_561635.1 91791984 4016997 complement(711869..712744) 1 NC_007954.1 DAHP synthetase I/KDSA 712744 4016997 Sden_0622 Shewanella denitrificans OS217 DAHP synthetase I/KDSA YP_561635.1 711869 R 318161 CDS YP_561636.1 91791985 4016998 complement(712820..714133) 1 NC_007954.1 hypothetical protein 714133 4016998 Sden_0623 Shewanella denitrificans OS217 hypothetical protein YP_561636.1 712820 R 318161 CDS YP_561637.1 91791986 4016999 complement(714139..715566) 1 NC_007954.1 major facilitator transporter 715566 4016999 Sden_0624 Shewanella denitrificans OS217 major facilitator transporter YP_561637.1 714139 R 318161 CDS YP_561638.1 91791987 4017000 complement(715616..716236) 1 NC_007954.1 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase 716236 4017000 Sden_0625 Shewanella denitrificans OS217 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase YP_561638.1 715616 R 318161 CDS YP_561639.1 91791988 4017001 complement(716241..717641) 1 NC_007954.1 anthranilate synthase component I/chorismate-binding protein 717641 4017001 Sden_0626 Shewanella denitrificans OS217 anthranilate synthase component I/chorismate-binding protein YP_561639.1 716241 R 318161 CDS YP_561640.1 91791989 4017002 complement(717641..718987) 1 NC_007954.1 coenzyme F390 synthetase 718987 4017002 Sden_0627 Shewanella denitrificans OS217 coenzyme F390 synthetase YP_561640.1 717641 R 318161 CDS YP_561641.1 91791990 4017003 complement(718975..724488) 1 NC_007954.1 amino acid adenylation 724488 4017003 Sden_0628 Shewanella denitrificans OS217 amino acid adenylation YP_561641.1 718975 R 318161 CDS YP_561642.1 91791991 4017004 complement(724527..725630) 1 NC_007954.1 hypothetical protein 725630 4017004 Sden_0629 Shewanella denitrificans OS217 hypothetical protein YP_561642.1 724527 R 318161 CDS YP_561643.1 91791992 4017005 complement(725717..726418) 1 NC_007954.1 NADPH-dependent FMN reductase 726418 4017005 Sden_0630 Shewanella denitrificans OS217 NADPH-dependent FMN reductase YP_561643.1 725717 R 318161 CDS YP_561644.1 91791993 4017006 complement(726587..727942) 1 NC_007954.1 glycine hydroxymethyltransferase 727942 4017006 Sden_0631 Shewanella denitrificans OS217 glycine hydroxymethyltransferase YP_561644.1 726587 R 318161 CDS YP_561645.1 91791994 4017007 complement(727955..728935) 1 NC_007954.1 phosphopantetheine-binding 728935 4017007 Sden_0632 Shewanella denitrificans OS217 phosphopantetheine-binding YP_561645.1 727955 R 318161 CDS YP_561646.1 91791995 4017008 complement(728958..730067) 1 NC_007954.1 hypothetical protein 730067 4017008 Sden_0633 Shewanella denitrificans OS217 hypothetical protein YP_561646.1 728958 R 318161 CDS YP_561647.1 91791996 4017009 731116..731841 1 NC_007954.1 4'-phosphopantetheinyl transferase 731841 4017009 Sden_0634 Shewanella denitrificans OS217 4'-phosphopantetheinyl transferase YP_561647.1 731116 D 318161 CDS YP_561648.1 91791997 4017010 731996..732865 1 NC_007954.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase YghU 732865 4017010 Sden_0635 Shewanella denitrificans OS217 glutathione S-transferase YghU YP_561648.1 731996 D 318161 CDS YP_561649.1 91791998 4017011 734654..737494 1 NC_007954.1 lipoprotein 737494 4017011 Sden_0636 Shewanella denitrificans OS217 lipoprotein YP_561649.1 734654 D 318161 CDS YP_561650.1 91791999 4017012 737587..740337 1 NC_007954.1 TonB-dependent receptor 740337 4017012 Sden_0637 Shewanella denitrificans OS217 TonB-dependent receptor YP_561650.1 737587 D 318161 CDS YP_561651.1 91792000 4016667 740960..742141 1 NC_007954.1 phosphate-selective porin O and P 742141 4016667 Sden_0638 Shewanella denitrificans OS217 phosphate-selective porin O and P YP_561651.1 740960 D 318161 CDS YP_561652.1 91792001 4016668 742281..742811 1 NC_007954.1 FMN-binding 742811 4016668 Sden_0639 Shewanella denitrificans OS217 FMN-binding YP_561652.1 742281 D 318161 CDS YP_561653.1 91792002 4016669 742872..743681 1 NC_007954.1 PepSY-associated TM helix 743681 4016669 Sden_0640 Shewanella denitrificans OS217 PepSY-associated TM helix YP_561653.1 742872 D 318161 CDS YP_561654.1 91792003 4016670 complement(743682..743987) 1 NC_007954.1 GCN5-related N-acetyltransferase 743987 4016670 Sden_0641 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561654.1 743682 R 318161 CDS YP_561655.1 91792004 4016671 744631..745527 1 NC_007954.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 745527 metF 4016671 metF Shewanella denitrificans OS217 5,10-methylenetetrahydrofolate reductase YP_561655.1 744631 D 318161 CDS YP_561656.1 91792005 4016672 745952..746428 1 NC_007954.1 hypothetical protein 746428 4016672 Sden_0643 Shewanella denitrificans OS217 hypothetical protein YP_561656.1 745952 D 318161 CDS YP_561657.1 91792006 4016673 746621..746980 1 NC_007954.1 GCN5-related N-acetyltransferase 746980 4016673 Sden_0644 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561657.1 746621 D 318161 CDS YP_561658.1 91792007 4016674 747106..747357 1 NC_007954.1 hypothetical protein 747357 4016674 Sden_0645 Shewanella denitrificans OS217 hypothetical protein YP_561658.1 747106 D 318161 CDS YP_561659.1 91792008 4016675 complement(747436..748308) 1 NC_007954.1 hypothetical protein 748308 4016675 Sden_0646 Shewanella denitrificans OS217 hypothetical protein YP_561659.1 747436 R 318161 CDS YP_561660.1 91792009 4016676 complement(748404..748817) 1 NC_007954.1 endoribonuclease L-PSP 748817 4016676 Sden_0647 Shewanella denitrificans OS217 endoribonuclease L-PSP YP_561660.1 748404 R 318161 CDS YP_561661.1 91792010 4016677 749101..749730 1 NC_007954.1 hypothetical protein 749730 4016677 Sden_0648 Shewanella denitrificans OS217 hypothetical protein YP_561661.1 749101 D 318161 CDS YP_561662.1 91792011 4016678 749784..751154 1 NC_007954.1 amino acid carrier protein 751154 4016678 Sden_0649 Shewanella denitrificans OS217 amino acid carrier protein YP_561662.1 749784 D 318161 CDS YP_561663.1 91792012 4016679 complement(751264..752619) 1 NC_007954.1 hypothetical protein 752619 4016679 Sden_0650 Shewanella denitrificans OS217 hypothetical protein YP_561663.1 751264 R 318161 CDS YP_561664.1 91792013 4016680 752917..753906 1 NC_007954.1 hypothetical protein 753906 4016680 Sden_0651 Shewanella denitrificans OS217 hypothetical protein YP_561664.1 752917 D 318161 CDS YP_561665.1 91792014 4016681 complement(753967..754737) 1 NC_007954.1 hypothetical protein 754737 4016681 Sden_0652 Shewanella denitrificans OS217 hypothetical protein YP_561665.1 753967 R 318161 CDS YP_561666.1 91792015 4016682 complement(754737..755672) 1 NC_007954.1 ABC transporter related 755672 4016682 Sden_0653 Shewanella denitrificans OS217 ABC transporter related YP_561666.1 754737 R 318161 CDS YP_561667.1 91792016 4016683 complement(755758..756288) 1 NC_007954.1 hypoxanthine phosphoribosyltransferase 756288 4016683 Sden_0654 Shewanella denitrificans OS217 hypoxanthine phosphoribosyltransferase YP_561667.1 755758 R 318161 CDS YP_561668.1 91792017 4016684 complement(756312..756968) 1 NC_007954.1 aromatic acid decarboxylase 756968 4016684 Sden_0655 Shewanella denitrificans OS217 aromatic acid decarboxylase YP_561668.1 756312 R 318161 CDS YP_561669.1 91792018 4016685 complement(757000..758394) 1 NC_007954.1 UDP-N-acetylmuramate 758394 4016685 Sden_0656 Shewanella denitrificans OS217 UDP-N-acetylmuramate YP_561669.1 757000 R 318161 CDS YP_561670.1 91792019 4016934 complement(758598..758774) 1 NC_007954.1 hypothetical protein 758774 4016934 Sden_0657 Shewanella denitrificans OS217 hypothetical protein YP_561670.1 758598 R 318161 CDS YP_561671.1 91792020 4016935 complement(759236..759508) 1 NC_007954.1 histone-like DNA-binding protein 759508 4016935 Sden_0658 Shewanella denitrificans OS217 histone-like DNA-binding protein YP_561671.1 759236 R 318161 CDS YP_561672.1 91792021 4016936 complement(759644..760441) 1 NC_007954.1 response regulator receiver 760441 4016936 Sden_0659 Shewanella denitrificans OS217 response regulator receiver YP_561672.1 759644 R 318161 CDS YP_561673.1 91792022 4016937 complement(760550..760972) 1 NC_007954.1 hypothetical protein 760972 4016937 Sden_0660 Shewanella denitrificans OS217 hypothetical protein YP_561673.1 760550 R 318161 CDS YP_561674.1 91792023 4016938 761107..761616 1 NC_007954.1 hypothetical protein 761616 4016938 Sden_0661 Shewanella denitrificans OS217 hypothetical protein YP_561674.1 761107 D 318161 CDS YP_561675.1 91792024 4016939 761727..762260 1 NC_007954.1 hypothetical protein 762260 4016939 Sden_0662 Shewanella denitrificans OS217 hypothetical protein YP_561675.1 761727 D 318161 CDS YP_561676.1 91792025 4016940 complement(762504..763526) 1 NC_007954.1 response regulator receiver 763526 4016940 Sden_0663 Shewanella denitrificans OS217 response regulator receiver YP_561676.1 762504 R 318161 CDS YP_561677.1 91792026 4016941 complement(763542..766103) 1 NC_007954.1 ATP-binding region, ATPase-like protein 766103 4016941 Sden_0664 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561677.1 763542 R 318161 CDS YP_561678.1 91792027 4016942 complement(766107..766610) 1 NC_007954.1 hypothetical protein 766610 4016942 Sden_0665 Shewanella denitrificans OS217 hypothetical protein YP_561678.1 766107 R 318161 CDS YP_561679.1 91792028 4016943 complement(766612..768459) 1 NC_007954.1 TonB-dependent receptor, plug 768459 4016943 Sden_0666 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_561679.1 766612 R 318161 CDS YP_561680.1 91792029 4016944 complement(768846..769481) 1 NC_007954.1 hypothetical protein 769481 4016944 Sden_0667 Shewanella denitrificans OS217 hypothetical protein YP_561680.1 768846 R 318161 CDS YP_561681.1 91792030 4016945 complement(769485..770477) 1 NC_007954.1 hypothetical protein 770477 4016945 Sden_0668 Shewanella denitrificans OS217 hypothetical protein YP_561681.1 769485 R 318161 CDS YP_561682.1 91792031 4016946 complement(770474..771238) 1 NC_007954.1 ABC transporter related 771238 4016946 Sden_0669 Shewanella denitrificans OS217 ABC transporter related YP_561682.1 770474 R 318161 CDS YP_561683.1 91792032 4016947 complement(771241..772350) 1 NC_007954.1 hypothetical protein 772350 4016947 Sden_0670 Shewanella denitrificans OS217 hypothetical protein YP_561683.1 771241 R 318161 CDS YP_561684.1 91792033 4016948 complement(772614..772925) 1 NC_007954.1 hypothetical protein 772925 4016948 Sden_0671 Shewanella denitrificans OS217 hypothetical protein YP_561684.1 772614 R 318161 CDS YP_561685.1 91792034 4016949 772981..773955 1 NC_007954.1 GumN 773955 4016949 Sden_0672 Shewanella denitrificans OS217 GumN YP_561685.1 772981 D 318161 CDS YP_561686.1 91792035 4016950 774001..774492 1 NC_007954.1 hypothetical protein 774492 4016950 Sden_0673 Shewanella denitrificans OS217 hypothetical protein YP_561686.1 774001 D 318161 CDS YP_561687.1 91792036 4016951 774657..775511 1 NC_007954.1 hypothetical protein 775511 4016951 Sden_0674 Shewanella denitrificans OS217 hypothetical protein YP_561687.1 774657 D 318161 CDS YP_561688.1 91792037 4016952 complement(775606..776739) 1 NC_007954.1 beta-lactamase 776739 4016952 Sden_0675 Shewanella denitrificans OS217 beta-lactamase YP_561688.1 775606 R 318161 CDS YP_561689.1 91792038 4016953 complement(776856..778304) 1 NC_007954.1 peptidase M23B 778304 4016953 Sden_0676 Shewanella denitrificans OS217 peptidase M23B YP_561689.1 776856 R 318161 CDS YP_561690.1 91792039 4016759 complement(778307..778708) 1 NC_007954.1 penicillinase repressor 778708 4016759 Sden_0677 Shewanella denitrificans OS217 penicillinase repressor YP_561690.1 778307 R 318161 CDS YP_561691.1 91792040 4016760 779367..780506 1 NC_007954.1 acyltransferase 3 780506 4016760 Sden_0678 Shewanella denitrificans OS217 acyltransferase 3 YP_561691.1 779367 D 318161 CDS YP_561692.1 91792041 4016761 780701..781279 1 NC_007954.1 hypothetical protein 781279 4016761 Sden_0679 Shewanella denitrificans OS217 hypothetical protein YP_561692.1 780701 D 318161 CDS YP_561693.1 91792042 4016762 781345..781713 1 NC_007954.1 hypothetical protein 781713 4016762 Sden_0680 Shewanella denitrificans OS217 hypothetical protein YP_561693.1 781345 D 318161 CDS YP_561694.1 91792043 4016763 783176..783925 1 NC_007954.1 KilA-like protein 783925 4016763 Sden_0681 Shewanella denitrificans OS217 KilA-like protein YP_561694.1 783176 D 318161 CDS YP_561695.1 91792044 4016764 complement(784105..784659) 1 NC_007954.1 hypothetical protein 784659 4016764 Sden_0682 Shewanella denitrificans OS217 hypothetical protein YP_561695.1 784105 R 318161 CDS YP_561696.1 91792045 4016766 785063..786262 1 NC_007954.1 aromatic amino acid permease 786262 4016766 Sden_0683 Shewanella denitrificans OS217 aromatic amino acid permease YP_561696.1 785063 D 318161 CDS YP_561697.1 91792046 4016767 786458..788614 1 NC_007954.1 hypothetical protein 788614 4016767 Sden_0684 Shewanella denitrificans OS217 hypothetical protein YP_561697.1 786458 D 318161 CDS YP_561698.1 91792047 4016768 complement(788644..789360) 1 NC_007954.1 pseudouridine synthase, Rsu 789360 4016768 Sden_0685 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_561698.1 788644 R 318161 CDS YP_561699.1 91792048 4016769 complement(789567..791765) 1 NC_007954.1 hypothetical protein 791765 4016769 Sden_0686 Shewanella denitrificans OS217 hypothetical protein YP_561699.1 789567 R 318161 CDS YP_561700.1 91792049 4016770 complement(791976..793325) 1 NC_007954.1 Na+/H+ antiporter NhaC 793325 4016770 Sden_0687 Shewanella denitrificans OS217 Na+/H+ antiporter NhaC YP_561700.1 791976 R 318161 CDS YP_561701.1 91792050 4016771 complement(793524..795305) 1 NC_007954.1 pseudouridine synthase 795305 4016771 Sden_0688 Shewanella denitrificans OS217 pseudouridine synthase YP_561701.1 793524 R 318161 CDS YP_561702.1 91792051 4016772 complement(795353..798547) 1 NC_007954.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 798547 4016772 Sden_0689 Shewanella denitrificans OS217 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_561702.1 795353 R 318161 CDS YP_561703.1 91792052 4016773 complement(798861..799442) 1 NC_007954.1 SH3, type 3 799442 4016773 Sden_0690 Shewanella denitrificans OS217 SH3, type 3 YP_561703.1 798861 R 318161 CDS YP_561704.1 91792053 4016774 complement(799566..800834) 1 NC_007954.1 phosphate transporter 800834 4016774 Sden_0691 Shewanella denitrificans OS217 phosphate transporter YP_561704.1 799566 R 318161 CDS YP_561705.1 91792054 4016775 complement(800859..801539) 1 NC_007954.1 hypothetical protein 801539 4016775 Sden_0692 Shewanella denitrificans OS217 hypothetical protein YP_561705.1 800859 R 318161 CDS YP_561706.1 91792055 4016776 801762..802727 1 NC_007954.1 adenylate cyclase 802727 4016776 Sden_0693 Shewanella denitrificans OS217 adenylate cyclase YP_561706.1 801762 D 318161 CDS YP_561707.1 91792056 4016895 complement(802762..803592) 1 NC_007954.1 Ion transport 2 803592 4016895 Sden_0694 Shewanella denitrificans OS217 Ion transport 2 YP_561707.1 802762 R 318161 CDS YP_561708.1 91792057 4016896 complement(803739..804065) 1 NC_007954.1 hypothetical protein 804065 4016896 Sden_0695 Shewanella denitrificans OS217 hypothetical protein YP_561708.1 803739 R 318161 CDS YP_561709.1 91792058 4016897 complement(804095..804739) 1 NC_007954.1 hypothetical protein 804739 4016897 Sden_0696 Shewanella denitrificans OS217 hypothetical protein YP_561709.1 804095 R 318161 CDS YP_561710.1 91792059 4016898 complement(804746..805435) 1 NC_007954.1 PspA/IM30 805435 4016898 Sden_0697 Shewanella denitrificans OS217 PspA/IM30 YP_561710.1 804746 R 318161 CDS YP_561711.1 91792060 4016899 complement(805447..805860) 1 NC_007954.1 hypothetical protein 805860 4016899 Sden_0698 Shewanella denitrificans OS217 hypothetical protein YP_561711.1 805447 R 318161 CDS YP_561712.1 91792061 4016900 complement(805961..807661) 1 NC_007954.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 807661 4016900 Sden_0699 Shewanella denitrificans OS217 spermidine synthase YP_561712.1 805961 R 318161 CDS YP_561713.1 91792062 4016901 complement(807670..808572) 1 NC_007954.1 hypothetical protein 808572 4016901 Sden_0700 Shewanella denitrificans OS217 hypothetical protein YP_561713.1 807670 R 318161 CDS YP_561714.1 91792063 4016902 complement(808579..809538) 1 NC_007954.1 hypothetical protein 809538 4016902 Sden_0701 Shewanella denitrificans OS217 hypothetical protein YP_561714.1 808579 R 318161 CDS YP_561715.1 91792064 4016903 809695..812562 1 NC_007954.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 812562 4016903 Sden_0702 Shewanella denitrificans OS217 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_561715.1 809695 D 318161 CDS YP_561716.1 91792065 4016904 complement(812651..813601) 1 NC_007954.1 hypothetical protein 813601 4016904 Sden_0703 Shewanella denitrificans OS217 hypothetical protein YP_561716.1 812651 R 318161 CDS YP_561717.1 91792066 4016905 complement(813673..814446) 1 NC_007954.1 amino acid-binding protein 814446 4016905 Sden_0704 Shewanella denitrificans OS217 amino acid-binding protein YP_561717.1 813673 R 318161 CDS YP_561718.1 91792067 4016906 complement(814600..814959) 1 NC_007954.1 hypothetical protein 814959 4016906 Sden_0705 Shewanella denitrificans OS217 hypothetical protein YP_561718.1 814600 R 318161 CDS YP_561719.1 91792068 4016907 815187..815702 1 NC_007954.1 hypothetical protein 815702 4016907 Sden_0706 Shewanella denitrificans OS217 hypothetical protein YP_561719.1 815187 D 318161 CDS YP_561720.1 91792069 4016908 complement(815833..816747) 1 NC_007954.1 ErfK/YbiS/YcfS/YnhG 816747 4016908 Sden_0707 Shewanella denitrificans OS217 ErfK/YbiS/YcfS/YnhG YP_561720.1 815833 R 318161 CDS YP_561721.1 91792070 4016909 complement(816931..817863) 1 NC_007954.1 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 817863 4016909 Sden_0708 Shewanella denitrificans OS217 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_561721.1 816931 R 318161 CDS YP_561722.1 91792071 4016910 817946..819388 1 NC_007954.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 819388 4016910 Sden_0709 Shewanella denitrificans OS217 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_561722.1 817946 D 318161 CDS YP_561723.1 91792072 4016911 819399..820385 1 NC_007954.1 hypothetical protein 820385 4016911 Sden_0710 Shewanella denitrificans OS217 hypothetical protein YP_561723.1 819399 D 318161 CDS YP_561724.1 91792073 4016912 complement(820440..821786) 1 NC_007954.1 esterase 821786 4016912 Sden_0711 Shewanella denitrificans OS217 esterase YP_561724.1 820440 R 318161 CDS YP_561725.1 91792074 4016913 complement(821895..823520) 1 NC_007954.1 chemotaxis sensory transducer 823520 4016913 Sden_0712 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_561725.1 821895 R 318161 CDS YP_561726.1 91792075 4016914 824165..824770 1 NC_007954.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 824770 4016914 Sden_0713 Shewanella denitrificans OS217 transcriptional regulator BetI YP_561726.1 824165 D 318161 CDS YP_561727.1 91792076 4016629 824761..826224 1 NC_007954.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 826224 4016629 Sden_0714 Shewanella denitrificans OS217 betaine aldehyde dehydrogenase YP_561727.1 824761 D 318161 CDS YP_561728.1 91792077 4016630 826239..827957 1 NC_007954.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 827957 4016630 Sden_0715 Shewanella denitrificans OS217 choline dehydrogenase YP_561728.1 826239 D 318161 CDS YP_561729.1 91792078 4016631 828209..829417 1 NC_007954.1 transporter, BCCT family protein 829417 4016631 Sden_0716 Shewanella denitrificans OS217 transporter, BCCT family protein YP_561729.1 828209 D 318161 CDS YP_561730.1 91792079 4016632 829567..830370 1 NC_007954.1 hypothetical protein 830370 4016632 Sden_0717 Shewanella denitrificans OS217 hypothetical protein YP_561730.1 829567 D 318161 CDS YP_561731.1 91792080 4016633 830510..830992 1 NC_007954.1 regulatory protein, MarR 830992 4016633 Sden_0718 Shewanella denitrificans OS217 regulatory protein, MarR YP_561731.1 830510 D 318161 CDS YP_561732.1 91792081 4016634 complement(831047..831898) 1 NC_007954.1 hypothetical protein 831898 4016634 Sden_0719 Shewanella denitrificans OS217 hypothetical protein YP_561732.1 831047 R 318161 CDS YP_561733.1 91792082 4016635 complement(831921..833096) 1 NC_007954.1 major facilitator transporter 833096 4016635 Sden_0720 Shewanella denitrificans OS217 major facilitator transporter YP_561733.1 831921 R 318161 CDS YP_561734.1 91792083 4016636 833273..834748 1 NC_007954.1 hypothetical protein 834748 4016636 Sden_0721 Shewanella denitrificans OS217 hypothetical protein YP_561734.1 833273 D 318161 CDS YP_561735.1 91792084 4016637 834805..835968 1 NC_007954.1 lipoprotein 835968 4016637 Sden_0722 Shewanella denitrificans OS217 lipoprotein YP_561735.1 834805 D 318161 CDS YP_561736.1 91792085 4016638 836089..837735 1 NC_007954.1 hypothetical protein 837735 4016638 Sden_0723 Shewanella denitrificans OS217 hypothetical protein YP_561736.1 836089 D 318161 CDS YP_561737.1 91792086 4016639 complement(837848..838492) 1 NC_007954.1 heat shock protein DnaJ-like protein 838492 4016639 Sden_0724 Shewanella denitrificans OS217 heat shock protein DnaJ-like protein YP_561737.1 837848 R 318161 CDS YP_561738.1 91792087 4016640 838666..839232 1 NC_007954.1 hypoxanthine-guanine phosphoribosyltransferase 839232 4016640 Sden_0725 Shewanella denitrificans OS217 hypoxanthine-guanine phosphoribosyltransferase YP_561738.1 838666 D 318161 CDS YP_561739.1 91792088 4016641 839341..841344 1 NC_007954.1 peptidase U32 841344 4016641 Sden_0726 Shewanella denitrificans OS217 peptidase U32 YP_561739.1 839341 D 318161 CDS YP_561740.1 91792089 4016642 841461..841784 1 NC_007954.1 hypothetical protein 841784 4016642 Sden_0727 Shewanella denitrificans OS217 hypothetical protein YP_561740.1 841461 D 318161 CDS YP_561741.1 91792090 4016643 841994..842698 1 NC_007954.1 hypothetical protein 842698 4016643 Sden_0728 Shewanella denitrificans OS217 hypothetical protein YP_561741.1 841994 D 318161 CDS YP_561742.1 91792091 4016645 843047..845017 1 NC_007954.1 TonB-dependent receptor, plug 845017 4016645 Sden_0729 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_561742.1 843047 D 318161 CDS YP_561743.1 91792092 4016646 845179..845925 1 NC_007954.1 hypothetical protein 845925 4016646 Sden_0730 Shewanella denitrificans OS217 hypothetical protein YP_561743.1 845179 D 318161 CDS YP_561744.1 91792093 4016837 complement(845996..846886) 1 NC_007954.1 LysR, substrate-binding 846886 4016837 Sden_0731 Shewanella denitrificans OS217 LysR, substrate-binding YP_561744.1 845996 R 318161 CDS YP_561745.1 91792094 4016838 847044..849362 1 NC_007954.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 849362 4016838 Sden_0732 Shewanella denitrificans OS217 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_561745.1 847044 D 318161 CDS YP_561746.1 91792095 4016839 complement(849397..850644) 1 NC_007954.1 4Fe-4S cluster binding 850644 4016839 Sden_0733 Shewanella denitrificans OS217 4Fe-4S cluster binding YP_561746.1 849397 R 318161 CDS YP_561747.1 91792096 4016840 complement(850675..852489) 1 NC_007954.1 GGDEF domain-containing protein 852489 4016840 Sden_0734 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561747.1 850675 R 318161 CDS YP_561748.1 91792097 4016841 852813..853247 1 NC_007954.1 hypothetical protein 853247 4016841 Sden_0735 Shewanella denitrificans OS217 hypothetical protein YP_561748.1 852813 D 318161 CDS YP_561749.1 91792098 4016842 complement(853327..855015) 1 NC_007954.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 855015 4016842 Sden_0736 Shewanella denitrificans OS217 malate dehydrogenase YP_561749.1 853327 R 318161 CDS YP_561750.1 91792099 4016843 complement(855249..855713) 1 NC_007954.1 hypothetical protein 855713 4016843 Sden_0737 Shewanella denitrificans OS217 hypothetical protein YP_561750.1 855249 R 318161 CDS YP_561751.1 91792100 4016844 856063..858606 1 NC_007954.1 TonB-dependent receptor 858606 4016844 Sden_0738 Shewanella denitrificans OS217 TonB-dependent receptor YP_561751.1 856063 D 318161 CDS YP_561752.1 91792101 4016845 858689..859333 1 NC_007954.1 glutathione S-transferase-like protein 859333 4016845 Sden_0739 Shewanella denitrificans OS217 glutathione S-transferase-like protein YP_561752.1 858689 D 318161 CDS YP_561753.1 91792102 4016846 complement(859449..859949) 1 NC_007954.1 hypothetical protein 859949 4016846 Sden_0740 Shewanella denitrificans OS217 hypothetical protein YP_561753.1 859449 R 318161 CDS YP_561754.1 91792103 4016847 complement(860030..860431) 1 NC_007954.1 hypothetical protein 860431 4016847 Sden_0741 Shewanella denitrificans OS217 hypothetical protein YP_561754.1 860030 R 318161 CDS YP_561755.1 91792104 4016848 860607..861998 1 NC_007954.1 hypothetical protein 861998 4016848 Sden_0742 Shewanella denitrificans OS217 hypothetical protein YP_561755.1 860607 D 318161 CDS YP_561756.1 91792105 4016849 complement(862038..864329) 1 NC_007954.1 hypothetical protein 864329 4016849 Sden_0743 Shewanella denitrificans OS217 hypothetical protein YP_561756.1 862038 R 318161 CDS YP_561757.1 91792106 4016850 complement(864540..865775) 1 NC_007954.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 865775 4016850 Sden_0744 Shewanella denitrificans OS217 ATP-dependent RNA helicase SrmB YP_561757.1 864540 R 318161 CDS YP_561758.1 91792107 4016851 complement(865986..866783) 1 NC_007954.1 O-methyltransferase 866783 4016851 Sden_0745 Shewanella denitrificans OS217 O-methyltransferase YP_561758.1 865986 R 318161 CDS YP_561759.1 91792108 4016852 867278..868606 1 NC_007954.1 branched-chain amino acid transport system II carrier protein 868606 4016852 Sden_0746 Shewanella denitrificans OS217 branched-chain amino acid transport system II carrier protein YP_561759.1 867278 D 318161 CDS YP_561760.1 91792109 4016853 868759..869670 1 NC_007954.1 tyrosine recombinase XerD 869670 4016853 Sden_0747 Shewanella denitrificans OS217 tyrosine recombinase XerD YP_561760.1 868759 D 318161 CDS YP_561761.1 91792110 4016854 869865..870593 1 NC_007954.1 thiol:disulfide interchange protein DsbC 870593 4016854 Sden_0748 Shewanella denitrificans OS217 thiol:disulfide interchange protein DsbC YP_561761.1 869865 D 318161 CDS YP_561762.1 91792111 4016855 870674..872398 1 NC_007954.1 single-stranded-DNA-specific exonuclease RecJ 872398 4016855 Sden_0749 Shewanella denitrificans OS217 single-stranded-DNA-specific exonuclease RecJ YP_561762.1 870674 D 318161 CDS YP_561763.1 91792112 4016856 complement(872434..873612) 1 NC_007954.1 hypothetical protein 873612 4016856 Sden_0750 Shewanella denitrificans OS217 hypothetical protein YP_561763.1 872434 R 318161 CDS YP_561764.1 91792113 4016590 complement(873795..874970) 1 NC_007954.1 twin-arginine translocation pathway signal 874970 4016590 Sden_0751 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_561764.1 873795 R 318161 CDS YP_561765.1 91792114 4016591 complement(874988..875431) 1 NC_007954.1 Fe-S metabolism associated SufE 875431 4016591 Sden_0752 Shewanella denitrificans OS217 Fe-S metabolism associated SufE YP_561765.1 874988 R 318161 CDS YP_561766.1 91792115 4016592 complement(875511..876773) 1 NC_007954.1 SufS subfamily cysteine desulfurase 876773 4016592 Sden_0753 Shewanella denitrificans OS217 SufS subfamily cysteine desulfurase YP_561766.1 875511 R 318161 CDS YP_561767.1 91792116 4016593 complement(876866..877906) 1 NC_007954.1 aldo/keto reductase 877906 4016593 Sden_0754 Shewanella denitrificans OS217 aldo/keto reductase YP_561767.1 876866 R 318161 CDS YP_561768.1 91792117 4016594 complement(878010..878522) 1 NC_007954.1 GCN5-related N-acetyltransferase 878522 4016594 Sden_0755 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561768.1 878010 R 318161 CDS YP_561769.1 91792118 4016595 complement(878509..879051) 1 NC_007954.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 879051 4016595 Sden_0756 Shewanella denitrificans OS217 NTPase YP_561769.1 878509 R 318161 CDS YP_561770.1 91792119 4016596 879471..880244 1 NC_007954.1 lipoprotein 880244 4016596 Sden_0757 Shewanella denitrificans OS217 lipoprotein YP_561770.1 879471 D 318161 CDS YP_561771.1 91792120 4016597 880428..881219 1 NC_007954.1 ribonuclease H 881219 4016597 Sden_0758 Shewanella denitrificans OS217 ribonuclease H YP_561771.1 880428 D 318161 CDS YP_561772.1 91792121 4016598 complement(881281..881925) 1 NC_007954.1 HAD family hydrolase 881925 4016598 Sden_0759 Shewanella denitrificans OS217 HAD family hydrolase YP_561772.1 881281 R 318161 CDS YP_561773.1 91792122 4016599 882100..883239 1 NC_007954.1 endonuclease/exonuclease/phosphatase 883239 4016599 Sden_0760 Shewanella denitrificans OS217 endonuclease/exonuclease/phosphatase YP_561773.1 882100 D 318161 CDS YP_561774.1 91792123 4016600 complement(883374..883829) 1 NC_007954.1 hypothetical protein 883829 4016600 Sden_0761 Shewanella denitrificans OS217 hypothetical protein YP_561774.1 883374 R 318161 CDS YP_561775.1 91792124 4016601 complement(883929..884138) 1 NC_007954.1 4-oxalocrotonate tautomerase 884138 4016601 Sden_0762 Shewanella denitrificans OS217 4-oxalocrotonate tautomerase YP_561775.1 883929 R 318161 CDS YP_561776.1 91792125 4016602 complement(884181..884564) 1 NC_007954.1 hypothetical protein 884564 4016602 Sden_0763 Shewanella denitrificans OS217 hypothetical protein YP_561776.1 884181 R 318161 CDS YP_561777.1 91792126 4016603 complement(884615..885211) 1 NC_007954.1 glutathione S-transferase-like protein 885211 4016603 Sden_0764 Shewanella denitrificans OS217 glutathione S-transferase-like protein YP_561777.1 884615 R 318161 CDS YP_561778.1 91792127 4016604 885436..886335 1 NC_007954.1 LysR, substrate-binding 886335 4016604 Sden_0765 Shewanella denitrificans OS217 LysR, substrate-binding YP_561778.1 885436 D 318161 CDS YP_561779.1 91792128 4016605 complement(886348..888282) 1 NC_007954.1 ammonium transporter 888282 4016605 Sden_0766 Shewanella denitrificans OS217 ammonium transporter YP_561779.1 886348 R 318161 CDS YP_561780.1 91792129 4016606 888431..888826 1 NC_007954.1 transporter 888826 4016606 Sden_0767 Shewanella denitrificans OS217 transporter YP_561780.1 888431 D 318161 CDS YP_561781.1 91792130 4016607 complement(888839..889813) 1 NC_007954.1 2-dehydropantoate 2-reductase 889813 4016607 Sden_0768 Shewanella denitrificans OS217 2-dehydropantoate 2-reductase YP_561781.1 888839 R 318161 CDS YP_561782.1 91792131 4016608 complement(889816..890196) 1 NC_007954.1 hypothetical protein 890196 4016608 Sden_0769 Shewanella denitrificans OS217 hypothetical protein YP_561782.1 889816 R 318161 CDS YP_561783.1 91792132 4016720 890367..890852 1 NC_007954.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 890852 4016720 Sden_0770 Shewanella denitrificans OS217 nucleotide-binding protein YP_561783.1 890367 D 318161 CDS YP_561784.1 91792133 4016721 complement(890969..892366) 1 NC_007954.1 major facilitator transporter 892366 4016721 Sden_0771 Shewanella denitrificans OS217 major facilitator transporter YP_561784.1 890969 R 318161 CDS YP_561785.1 91792134 4016722 complement(892552..892911) 1 NC_007954.1 hypothetical protein 892911 4016722 Sden_0772 Shewanella denitrificans OS217 hypothetical protein YP_561785.1 892552 R 318161 CDS YP_561786.1 91792135 4016723 complement(893447..894031) 1 NC_007954.1 peptidyl-prolyl cis-trans isomerase, cyclophilin type 894031 4016723 Sden_0773 Shewanella denitrificans OS217 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_561786.1 893447 R 318161 CDS YP_561787.1 91792136 4016724 complement(894048..894683) 1 NC_007954.1 lipoprotein 894683 4016724 Sden_0774 Shewanella denitrificans OS217 lipoprotein YP_561787.1 894048 R 318161 CDS YP_561788.1 91792137 4016725 894891..895916 1 NC_007954.1 hypothetical protein 895916 4016725 Sden_0775 Shewanella denitrificans OS217 hypothetical protein YP_561788.1 894891 D 318161 CDS YP_561789.1 91792138 4016726 896017..896961 1 NC_007954.1 sterol desaturase family protein 896961 4016726 Sden_0776 Shewanella denitrificans OS217 sterol desaturase family protein YP_561789.1 896017 D 318161 CDS YP_561790.1 91792139 4016727 897439..897954 1 NC_007954.1 hypothetical protein 897954 4016727 Sden_0777 Shewanella denitrificans OS217 hypothetical protein YP_561790.1 897439 D 318161 CDS YP_561791.1 91792140 4016728 898181..898723 1 NC_007954.1 hypothetical protein 898723 4016728 Sden_0778 Shewanella denitrificans OS217 hypothetical protein YP_561791.1 898181 D 318161 CDS YP_561792.1 91792141 4016729 898804..899229 1 NC_007954.1 GCN5-related N-acetyltransferase 899229 4016729 Sden_0779 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561792.1 898804 D 318161 CDS YP_561793.1 91792142 4016730 899409..900071 1 NC_007954.1 hypothetical protein 900071 4016730 Sden_0780 Shewanella denitrificans OS217 hypothetical protein YP_561793.1 899409 D 318161 CDS YP_561794.1 91792143 4016731 complement(900105..900923) 1 NC_007954.1 extradiol ring-cleavage dioxygenase III subunit B 900923 4016731 Sden_0781 Shewanella denitrificans OS217 extradiol ring-cleavage dioxygenase III subunit B YP_561794.1 900105 R 318161 CDS YP_561795.1 91792144 4016732 complement(901036..901485) 1 NC_007954.1 DoxX 901485 4016732 Sden_0782 Shewanella denitrificans OS217 DoxX YP_561795.1 901036 R 318161 CDS YP_561796.1 91792145 4016733 901648..902559 1 NC_007954.1 LysR, substrate-binding 902559 4016733 Sden_0783 Shewanella denitrificans OS217 LysR, substrate-binding YP_561796.1 901648 D 318161 CDS YP_561797.1 91792146 4016734 complement(902581..903345) 1 NC_007954.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 903345 hmuV 4016734 hmuV Shewanella denitrificans OS217 hemin importer ATP-binding subunit YP_561797.1 902581 R 318161 CDS YP_561798.1 91792147 4016735 complement(903353..904375) 1 NC_007954.1 transport system permease protein 904375 4016735 Sden_0785 Shewanella denitrificans OS217 transport system permease protein YP_561798.1 903353 R 318161 CDS YP_561799.1 91792148 4016736 complement(904380..905363) 1 NC_007954.1 periplasmic binding protein 905363 4016736 Sden_0786 Shewanella denitrificans OS217 periplasmic binding protein YP_561799.1 904380 R 318161 CDS YP_561800.1 91792149 4016737 complement(905365..905784) 1 NC_007954.1 biopolymer transport protein ExbD/TolR 905784 4016737 Sden_0787 Shewanella denitrificans OS217 biopolymer transport protein ExbD/TolR YP_561800.1 905365 R 318161 CDS YP_561801.1 91792150 4016738 complement(905781..906575) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 906575 4016738 Sden_0788 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_561801.1 905781 R 318161 CDS YP_561802.1 91792151 4016739 complement(906603..907412) 1 NC_007954.1 TonB-like protein 907412 4016739 Sden_0789 Shewanella denitrificans OS217 TonB-like protein YP_561802.1 906603 R 318161 CDS YP_561803.1 91792152 4016954 907591..909663 1 NC_007954.1 TonB-dependent haem/haemoglobin receptor 909663 4016954 Sden_0790 Shewanella denitrificans OS217 TonB-dependent haem/haemoglobin receptor YP_561803.1 907591 D 318161 CDS YP_561804.1 91792153 4016955 909741..910295 1 NC_007954.1 hypothetical protein 910295 4016955 Sden_0791 Shewanella denitrificans OS217 hypothetical protein YP_561804.1 909741 D 318161 CDS YP_561805.1 91792154 4016956 910348..910878 1 NC_007954.1 pyridoxamine 5'-phosphate oxidase-related, FMN-binding 910878 4016956 Sden_0792 Shewanella denitrificans OS217 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_561805.1 910348 D 318161 CDS YP_561806.1 91792155 4016957 911152..911853 1 NC_007954.1 pseudouridine synthase, Rsu 911853 4016957 Sden_0793 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_561806.1 911152 D 318161 CDS YP_561807.1 91792156 4016958 complement(911938..912588) 1 NC_007954.1 nicotinate-nucleotide adenylyltransferase 912588 4016958 Sden_0794 Shewanella denitrificans OS217 nicotinate-nucleotide adenylyltransferase YP_561807.1 911938 R 318161 CDS YP_561808.1 91792157 4016959 complement(912592..913623) 1 NC_007954.1 DNA polymerase III, delta subunit 913623 4016959 Sden_0795 Shewanella denitrificans OS217 DNA polymerase III, delta subunit YP_561808.1 912592 R 318161 CDS YP_561809.1 91792158 4016960 complement(913660..914157) 1 NC_007954.1 rare lipoprotein B 914157 4016960 Sden_0796 Shewanella denitrificans OS217 rare lipoprotein B YP_561809.1 913660 R 318161 CDS YP_561810.1 91792159 4016961 complement(914322..916940) 1 NC_007954.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 916940 leuS 4016961 leuS Shewanella denitrificans OS217 leucyl-tRNA synthetase YP_561810.1 914322 R 318161 CDS YP_561811.1 91792160 4016962 917068..917568 1 NC_007954.1 hypothetical protein 917568 4016962 Sden_0798 Shewanella denitrificans OS217 hypothetical protein YP_561811.1 917068 D 318161 CDS YP_561812.1 91792161 4016963 complement(917660..919141) 1 NC_007954.1 ATP-binding region, ATPase-like protein 919141 4016963 Sden_0799 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_561812.1 917660 R 318161 CDS YP_561813.1 91792162 4016964 complement(919175..919849) 1 NC_007954.1 response regulator receiver 919849 4016964 Sden_0800 Shewanella denitrificans OS217 response regulator receiver YP_561813.1 919175 R 318161 CDS YP_561814.1 91792163 4016965 complement(919885..920259) 1 NC_007954.1 diacylglycerol kinase 920259 4016965 Sden_0801 Shewanella denitrificans OS217 diacylglycerol kinase YP_561814.1 919885 R 318161 CDS YP_561815.1 91792164 4016966 complement(920375..921970) 1 NC_007954.1 sulfatase 921970 4016966 Sden_0802 Shewanella denitrificans OS217 sulfatase YP_561815.1 920375 R 318161 CDS YP_561816.1 91792165 4016967 922485..923528 1 NC_007954.1 hypothetical protein 923528 4016967 Sden_0803 Shewanella denitrificans OS217 hypothetical protein YP_561816.1 922485 D 318161 CDS YP_561817.1 91792166 4016968 923752..925041 1 NC_007954.1 peptidase A1, pepsin 925041 4016968 Sden_0804 Shewanella denitrificans OS217 peptidase A1, pepsin YP_561817.1 923752 D 318161 CDS YP_561818.1 91792167 4016969 925038..925553 1 NC_007954.1 GCN5-related N-acetyltransferase 925553 4016969 Sden_0805 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561818.1 925038 D 318161 CDS YP_561819.1 91792168 4016970 925606..926466 1 NC_007954.1 uroporphyrin-III C/tetrapyrrole methyltransferase 926466 4016970 Sden_0806 Shewanella denitrificans OS217 uroporphyrin-III C/tetrapyrrole methyltransferase YP_561819.1 925606 D 318161 CDS YP_561820.1 91792169 4016971 926463..926723 1 NC_007954.1 hypothetical protein 926723 4016971 Sden_0807 Shewanella denitrificans OS217 hypothetical protein YP_561820.1 926463 D 318161 CDS YP_561821.1 91792170 4017032 927366..929123 1 NC_007954.1 GGDEF domain-containing protein 929123 4017032 Sden_0809 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561821.1 927366 D 318161 CDS YP_561822.1 91792171 4017033 complement(929329..929487) 1 NC_007954.1 hypothetical protein 929487 4017033 Sden_0810 Shewanella denitrificans OS217 hypothetical protein YP_561822.1 929329 R 318161 CDS YP_561823.1 91792172 4017034 complement(929675..931300) 1 NC_007954.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 931300 lnt 4017034 lnt Shewanella denitrificans OS217 apolipoprotein N-acyltransferase YP_561823.1 929675 R 318161 CDS YP_561824.1 91792173 4017035 complement(931304..932182) 1 NC_007954.1 CBS:transporter associated 932182 4017035 Sden_0812 Shewanella denitrificans OS217 CBS:transporter associated YP_561824.1 931304 R 318161 CDS YP_561825.1 91792174 4017036 complement(932229..932690) 1 NC_007954.1 metalloprotease 932690 4017036 Sden_0813 Shewanella denitrificans OS217 metalloprotease YP_561825.1 932229 R 318161 CDS YP_561826.1 91792175 4017037 complement(932680..933777) 1 NC_007954.1 PhoH-like protein 933777 4017037 Sden_0814 Shewanella denitrificans OS217 PhoH-like protein YP_561826.1 932680 R 318161 CDS YP_561827.1 91792176 4017038 complement(933919..935343) 1 NC_007954.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 935343 4017038 Sden_0815 Shewanella denitrificans OS217 (dimethylallyl)adenosine tRNA methylthiotransferase YP_561827.1 933919 R 318161 CDS YP_561828.1 91792177 4017039 complement(935437..935823) 1 NC_007954.1 hypothetical protein 935823 4017039 Sden_0816 Shewanella denitrificans OS217 hypothetical protein YP_561828.1 935437 R 318161 CDS YP_561829.1 91792178 4017040 936051..937286 1 NC_007954.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 937286 4017040 Sden_0817 Shewanella denitrificans OS217 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_561829.1 936051 D 318161 CDS YP_561830.1 91792179 4017041 937379..937966 1 NC_007954.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 937966 4017041 Sden_0818 Shewanella denitrificans OS217 peptidyl-tRNA hydrolase YP_561830.1 937379 D 318161 CDS YP_561831.1 91792180 4017042 938057..939148 1 NC_007954.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 939148 4017042 Sden_0819 Shewanella denitrificans OS217 GTP-dependent nucleic acid-binding protein EngD YP_561831.1 938057 D 318161 CDS YP_561832.1 91792181 4017043 complement(939251..939559) 1 NC_007954.1 hypothetical protein 939559 4017043 Sden_0820 Shewanella denitrificans OS217 hypothetical protein YP_561832.1 939251 R 318161 CDS YP_561833.1 91792182 4017090 941178..941567 1 NC_007954.1 hypothetical protein 941567 4017090 Sden_0821 Shewanella denitrificans OS217 hypothetical protein YP_561833.1 941178 D 318161 CDS YP_561834.1 91792183 4017091 941609..942418 1 NC_007954.1 Beta-lactamase 942418 4017091 Sden_0822 Shewanella denitrificans OS217 Beta-lactamase YP_561834.1 941609 D 318161 CDS YP_561835.1 91792184 4017092 942612..943904 1 NC_007954.1 O-acetylhomoserine/O-acetylserine sulfhydrylase 943904 4017092 Sden_0823 Shewanella denitrificans OS217 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_561835.1 942612 D 318161 CDS YP_561836.1 91792185 4017093 944095..946281 1 NC_007954.1 hypothetical protein 946281 4017093 Sden_0824 Shewanella denitrificans OS217 hypothetical protein YP_561836.1 944095 D 318161 CDS YP_561837.1 91792186 4017094 complement(946603..947085) 1 NC_007954.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 947085 4017094 Sden_0825 Shewanella denitrificans OS217 arginine repressor YP_561837.1 946603 R 318161 CDS YP_561838.1 91792187 4017095 947352..948287 1 NC_007954.1 oxidizes malate to oxaloacetate; malate dehydrogenase 948287 4017095 Sden_0826 Shewanella denitrificans OS217 malate dehydrogenase YP_561838.1 947352 D 318161 CDS YP_561839.1 91792188 4017096 948369..949121 1 NC_007954.1 short chain dehydrogenase 949121 4017096 Sden_0827 Shewanella denitrificans OS217 short chain dehydrogenase YP_561839.1 948369 D 318161 CDS YP_561840.1 91792189 4017097 complement(949499..950260) 1 NC_007954.1 5-formyltetrahydrofolate cyclo-ligase 950260 4017097 Sden_0828 Shewanella denitrificans OS217 5-formyltetrahydrofolate cyclo-ligase YP_561840.1 949499 R 318161 CDS YP_561841.1 91792190 4017098 complement(950500..950808) 1 NC_007954.1 hypothetical protein 950808 4017098 Sden_0829 Shewanella denitrificans OS217 hypothetical protein YP_561841.1 950500 R 318161 CDS YP_561842.1 91792191 4017099 951171..951746 1 NC_007954.1 YgfB and YecA 951746 4017099 Sden_0830 Shewanella denitrificans OS217 YgfB and YecA YP_561842.1 951171 D 318161 CDS YP_561843.1 91792192 4017100 951782..953047 1 NC_007954.1 2-polyprenyl-6-methoxyphenol 4-hydroxylase 953047 4017100 Sden_0831 Shewanella denitrificans OS217 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_561843.1 951782 D 318161 CDS YP_561844.1 91792193 4017101 953124..954341 1 NC_007954.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 954341 4017101 Sden_0832 Shewanella denitrificans OS217 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_561844.1 953124 D 318161 CDS YP_561845.1 91792194 4016797 954579..955673 1 NC_007954.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 955673 gcvT 4016797 gcvT Shewanella denitrificans OS217 glycine cleavage system aminomethyltransferase T YP_561845.1 954579 D 318161 CDS YP_561846.1 91792195 4016798 955752..956141 1 NC_007954.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 956141 4016798 Sden_0834 Shewanella denitrificans OS217 glycine cleavage system protein H YP_561846.1 955752 D 318161 CDS YP_561847.1 91792196 4016799 956295..959249 1 NC_007954.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 959249 4016799 Sden_0835 Shewanella denitrificans OS217 glycine dehydrogenase YP_561847.1 956295 D 318161 CDS YP_561848.1 91792197 4016800 960047..961120 1 NC_007954.1 nucleoid-associated protein-like protein 961120 4016800 Sden_0836 Shewanella denitrificans OS217 nucleoid-associated protein-like protein YP_561848.1 960047 D 318161 CDS YP_561849.1 91792198 4016801 961101..962483 1 NC_007954.1 hypothetical protein 962483 4016801 Sden_0837 Shewanella denitrificans OS217 hypothetical protein YP_561849.1 961101 D 318161 CDS YP_561850.1 91792199 4016802 963343..964860 1 NC_007954.1 filamentation induced by cAMP protein Fic 964860 4016802 Sden_0838 Shewanella denitrificans OS217 filamentation induced by cAMP protein Fic YP_561850.1 963343 D 318161 CDS YP_561851.1 91792200 4016804 965047..965232 1 NC_007954.1 inner membrane protein 965232 4016804 Sden_0840 Shewanella denitrificans OS217 inner membrane protein YP_561851.1 965047 D 318161 CDS YP_561852.1 91792201 4016805 complement(965239..965946) 1 NC_007954.1 hypothetical protein 965946 4016805 Sden_0841 Shewanella denitrificans OS217 hypothetical protein YP_561852.1 965239 R 318161 CDS YP_561853.1 91792202 4016806 complement(966009..966263) 1 NC_007954.1 hypothetical protein 966263 4016806 Sden_0842 Shewanella denitrificans OS217 hypothetical protein YP_561853.1 966009 R 318161 CDS YP_561854.1 91792203 4016807 966933..967262 1 NC_007954.1 hypothetical protein 967262 4016807 Sden_0843 Shewanella denitrificans OS217 hypothetical protein YP_561854.1 966933 D 318161 CDS YP_561855.1 91792204 4016808 967262..968443 1 NC_007954.1 major facilitator transporter 968443 4016808 Sden_0844 Shewanella denitrificans OS217 major facilitator transporter YP_561855.1 967262 D 318161 CDS YP_561856.1 91792205 4016809 968697..968957 1 NC_007954.1 hypothetical protein 968957 4016809 Sden_0845 Shewanella denitrificans OS217 hypothetical protein YP_561856.1 968697 D 318161 CDS YP_561857.1 91792206 4016810 complement(969067..970449) 1 NC_007954.1 amidohydrolase 970449 4016810 Sden_0846 Shewanella denitrificans OS217 amidohydrolase YP_561857.1 969067 R 318161 CDS YP_561858.1 91792207 4016811 complement(970517..971215) 1 NC_007954.1 response regulator receiver 971215 4016811 Sden_0847 Shewanella denitrificans OS217 response regulator receiver YP_561858.1 970517 R 318161 CDS YP_561859.1 91792208 4016812 complement(971209..972189) 1 NC_007954.1 histidine kinase internal region 972189 4016812 Sden_0848 Shewanella denitrificans OS217 histidine kinase internal region YP_561859.1 971209 R 318161 CDS YP_561860.1 91792209 4016813 972421..972669 1 NC_007954.1 hypothetical protein 972669 4016813 Sden_0849 Shewanella denitrificans OS217 hypothetical protein YP_561860.1 972421 D 318161 CDS YP_561861.1 91792210 4016814 972869..973504 1 NC_007954.1 lysine exporter protein LysE/YggA 973504 4016814 Sden_0850 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_561861.1 972869 D 318161 CDS YP_561862.1 91792211 4016815 complement(973993..975279) 1 NC_007954.1 Serine-type D-Ala-D-Ala carboxypeptidase 975279 4016815 Sden_0851 Shewanella denitrificans OS217 Serine-type D-Ala-D-Ala carboxypeptidase YP_561862.1 973993 R 318161 CDS YP_561863.1 91792212 4016816 complement(975390..976283) 1 NC_007954.1 rare lipoprotein A 976283 4016816 Sden_0852 Shewanella denitrificans OS217 rare lipoprotein A YP_561863.1 975390 R 318161 CDS YP_561864.1 91792213 4017048 complement(976273..977283) 1 NC_007954.1 lytic murein transglycosylase B 977283 4017048 Sden_0853 Shewanella denitrificans OS217 lytic murein transglycosylase B YP_561864.1 976273 R 318161 CDS YP_561865.1 91792214 4017049 complement(977293..978399) 1 NC_007954.1 rod shape-determining protein RodA 978399 4017049 Sden_0854 Shewanella denitrificans OS217 rod shape-determining protein RodA YP_561865.1 977293 R 318161 CDS YP_561866.1 91792215 4017050 complement(978396..980252) 1 NC_007954.1 peptidoglycan glycosyltransferase 980252 4017050 Sden_0855 Shewanella denitrificans OS217 peptidoglycan glycosyltransferase YP_561866.1 978396 R 318161 CDS YP_561867.1 91792216 4017051 complement(980353..980823) 1 NC_007954.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 980823 4017051 Sden_0856 Shewanella denitrificans OS217 rRNA large subunit methyltransferase YP_561867.1 980353 R 318161 CDS YP_561868.1 91792217 4017052 complement(980824..981153) 1 NC_007954.1 Iojap-related protein 981153 4017052 Sden_0857 Shewanella denitrificans OS217 Iojap-related protein YP_561868.1 980824 R 318161 CDS YP_561869.1 91792218 4017053 981619..981795 1 NC_007954.1 hypothetical protein 981795 4017053 Sden_0858 Shewanella denitrificans OS217 hypothetical protein YP_561869.1 981619 D 318161 CDS YP_561870.1 91792219 4017054 complement(981923..983719) 1 NC_007954.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 983719 4017054 Sden_0859 Shewanella denitrificans OS217 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_561870.1 981923 R 318161 CDS YP_561871.1 91792220 4017055 complement(983719..985560) 1 NC_007954.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 985560 4017055 Sden_0860 Shewanella denitrificans OS217 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_561871.1 983719 R 318161 CDS YP_561872.1 91792221 4017056 985974..987419 1 NC_007954.1 chemotaxis sensory transducer 987419 4017056 Sden_0861 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_561872.1 985974 D 318161 CDS YP_561873.1 91792222 4017057 complement(987496..987942) 1 NC_007954.1 hypothetical protein 987942 4017057 Sden_0862 Shewanella denitrificans OS217 hypothetical protein YP_561873.1 987496 R 318161 CDS YP_561874.1 91792223 4017058 988430..989104 1 NC_007954.1 nitroreductase 989104 4017058 Sden_0863 Shewanella denitrificans OS217 nitroreductase YP_561874.1 988430 D 318161 CDS YP_561875.1 91792224 4017059 complement(989116..989559) 1 NC_007954.1 GCN5-related N-acetyltransferase 989559 4017059 Sden_0864 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561875.1 989116 R 318161 CDS YP_561876.1 91792225 4017060 989886..990155 1 NC_007954.1 hypothetical protein 990155 4017060 Sden_0865 Shewanella denitrificans OS217 hypothetical protein YP_561876.1 989886 D 318161 CDS YP_561877.1 91792226 4017061 990155..990697 1 NC_007954.1 GCN5-related N-acetyltransferase 990697 4017061 Sden_0866 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561877.1 990155 D 318161 CDS YP_561878.1 91792227 4017062 complement(990760..991725) 1 NC_007954.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 991725 4017062 Sden_0867 Shewanella denitrificans OS217 lipoyl synthase YP_561878.1 990760 R 318161 CDS YP_561879.1 91792228 4017063 complement(991727..992410) 1 NC_007954.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 992410 lipB 4017063 lipB Shewanella denitrificans OS217 lipoate-protein ligase B YP_561879.1 991727 R 318161 CDS YP_561880.1 91792229 4017064 complement(992466..992765) 1 NC_007954.1 hypothetical protein 992765 4017064 Sden_0869 Shewanella denitrificans OS217 hypothetical protein YP_561880.1 992466 R 318161 CDS YP_561881.1 91792230 4017065 993068..994612 1 NC_007954.1 hypothetical protein 994612 4017065 Sden_0870 Shewanella denitrificans OS217 hypothetical protein YP_561881.1 993068 D 318161 CDS YP_561882.1 91792231 4017066 complement(994704..996212) 1 NC_007954.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 996212 4017066 Sden_0871 Shewanella denitrificans OS217 leucyl aminopeptidase YP_561882.1 994704 R 318161 CDS YP_561883.1 91792232 4016973 996624..997736 1 NC_007954.1 permease YjgP/YjgQ 997736 4016973 Sden_0872 Shewanella denitrificans OS217 permease YjgP/YjgQ YP_561883.1 996624 D 318161 CDS YP_561884.1 91792233 4016974 997736..998791 1 NC_007954.1 permease YjgP/YjgQ 998791 4016974 Sden_0873 Shewanella denitrificans OS217 permease YjgP/YjgQ YP_561884.1 997736 D 318161 CDS YP_561885.1 91792234 4016975 complement(998888..1000030) 1 NC_007954.1 hypothetical protein 1000030 4016975 Sden_0874 Shewanella denitrificans OS217 hypothetical protein YP_561885.1 998888 R 318161 CDS YP_561886.1 91792235 4016976 1000293..1001144 1 NC_007954.1 signal transduction protein 1001144 4016976 Sden_0875 Shewanella denitrificans OS217 signal transduction protein YP_561886.1 1000293 D 318161 CDS YP_561887.1 91792236 4016977 complement(1001228..1001737) 1 NC_007954.1 hypothetical protein 1001737 4016977 Sden_0876 Shewanella denitrificans OS217 hypothetical protein YP_561887.1 1001228 R 318161 CDS YP_561888.1 91792237 4016978 complement(1001740..1001991) 1 NC_007954.1 hypothetical protein 1001991 4016978 Sden_0877 Shewanella denitrificans OS217 hypothetical protein YP_561888.1 1001740 R 318161 CDS YP_561889.1 91792238 4016979 complement(1002094..1002645) 1 NC_007954.1 GCN5-related N-acetyltransferase 1002645 4016979 Sden_0878 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561889.1 1002094 R 318161 CDS YP_561890.1 91792239 4016980 complement(1003816..1004514) 1 NC_007954.1 hypothetical protein 1004514 4016980 Sden_0879 Shewanella denitrificans OS217 hypothetical protein YP_561890.1 1003816 R 318161 CDS YP_561891.1 91792240 4016981 complement(1005082..1005672) 1 NC_007954.1 carboxypeptidase 1005672 4016981 Sden_0880 Shewanella denitrificans OS217 carboxypeptidase YP_561891.1 1005082 R 318161 CDS YP_561892.1 91792241 4016982 1005792..1006808 1 NC_007954.1 transposase IS116/IS110/IS902 1006808 4016982 Sden_0881 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_561892.1 1005792 D 318161 CDS YP_561893.1 91792242 4016983 complement(1006908..1007963) 1 NC_007954.1 thermostable carboxypeptidase 1 1007963 4016983 Sden_0882 Shewanella denitrificans OS217 thermostable carboxypeptidase 1 YP_561893.1 1006908 R 318161 CDS YP_561894.1 91792243 4016984 complement(1008024..1008770) 1 NC_007954.1 hypothetical protein 1008770 4016984 Sden_0883 Shewanella denitrificans OS217 hypothetical protein YP_561894.1 1008024 R 318161 CDS YP_561895.1 91792244 4016985 complement(1008879..1009487) 1 NC_007954.1 hypothetical protein 1009487 4016985 Sden_0884 Shewanella denitrificans OS217 hypothetical protein YP_561895.1 1008879 R 318161 CDS YP_561896.1 91792245 4016986 complement(1009734..1010405) 1 NC_007954.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1010405 4016986 Sden_0885 Shewanella denitrificans OS217 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_561896.1 1009734 R 318161 CDS YP_561897.1 91792246 4016987 complement(1010579..1011880) 1 NC_007954.1 DEAD/DEAH box helicase-like protein 1011880 4016987 Sden_0886 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_561897.1 1010579 R 318161 CDS YP_561898.1 91792247 4016988 complement(1012252..1014066) 1 NC_007954.1 peptidase M24 1014066 4016988 Sden_0887 Shewanella denitrificans OS217 peptidase M24 YP_561898.1 1012252 R 318161 CDS YP_561899.1 91792248 4016989 1014265..1015524 1 NC_007954.1 peptidase M24 1015524 4016989 Sden_0888 Shewanella denitrificans OS217 peptidase M24 YP_561899.1 1014265 D 318161 CDS YP_561900.1 91792249 4016990 complement(1015934..1016410) 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 1016410 4016990 Sden_0889 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_561900.1 1015934 R 318161 CDS YP_561901.1 91792250 4016991 complement(1016565..1017227) 1 NC_007954.1 YceI 1017227 4016991 Sden_0890 Shewanella denitrificans OS217 YceI YP_561901.1 1016565 R 318161 CDS YP_561902.1 91792251 4016992 1017380..1018801 1 NC_007954.1 DEAD/DEAH box helicase-like protein 1018801 4016992 Sden_0891 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_561902.1 1017380 D 318161 CDS YP_561903.1 91792252 4016701 complement(1018921..1019958) 1 NC_007954.1 abortive infection protein 1019958 4016701 Sden_0892 Shewanella denitrificans OS217 abortive infection protein YP_561903.1 1018921 R 318161 CDS YP_561904.1 91792253 4016702 complement(1020023..1020907) 1 NC_007954.1 hypothetical protein 1020907 4016702 Sden_0893 Shewanella denitrificans OS217 hypothetical protein YP_561904.1 1020023 R 318161 CDS YP_561905.1 91792254 4016703 complement(1020897..1021304) 1 NC_007954.1 transcriptional regulator PadR-like protein 1021304 4016703 Sden_0894 Shewanella denitrificans OS217 transcriptional regulator PadR-like protein YP_561905.1 1020897 R 318161 CDS YP_561906.1 91792255 4016704 1021772..1022182 1 NC_007954.1 hypothetical protein 1022182 4016704 Sden_0895 Shewanella denitrificans OS217 hypothetical protein YP_561906.1 1021772 D 318161 CDS YP_561907.1 91792256 4016705 1022449..1023258 1 NC_007954.1 methyltransferase type 11 1023258 4016705 Sden_0896 Shewanella denitrificans OS217 methyltransferase type 11 YP_561907.1 1022449 D 318161 CDS YP_561908.1 91792257 4016706 complement(1023323..1023988) 1 NC_007954.1 hypothetical protein 1023988 4016706 Sden_0897 Shewanella denitrificans OS217 hypothetical protein YP_561908.1 1023323 R 318161 CDS YP_561909.1 91792258 4016707 1024284..1024787 1 NC_007954.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1024787 def 4016707 def Shewanella denitrificans OS217 peptide deformylase YP_561909.1 1024284 D 318161 CDS YP_561910.1 91792259 4016708 1024976..1025581 1 NC_007954.1 methyltransferase type 11 1025581 4016708 Sden_0899 Shewanella denitrificans OS217 methyltransferase type 11 YP_561910.1 1024976 D 318161 CDS YP_561911.1 91792260 4016709 1025843..1026928 1 NC_007954.1 L-sorbosone dehydrogenase (SNDH) 1026928 4016709 Sden_0900 Shewanella denitrificans OS217 L-sorbosone dehydrogenase (SNDH) YP_561911.1 1025843 D 318161 CDS YP_561912.1 91792261 4016710 1026943..1029150 1 NC_007954.1 TonB-dependent receptor 1029150 4016710 Sden_0901 Shewanella denitrificans OS217 TonB-dependent receptor YP_561912.1 1026943 D 318161 CDS YP_561913.1 91792262 4016711 1029249..1030061 1 NC_007954.1 regulatory protein RecX 1030061 4016711 Sden_0902 Shewanella denitrificans OS217 regulatory protein RecX YP_561913.1 1029249 D 318161 CDS YP_561914.1 91792263 4016712 complement(1030095..1030781) 1 NC_007954.1 hypothetical protein 1030781 4016712 Sden_0903 Shewanella denitrificans OS217 hypothetical protein YP_561914.1 1030095 R 318161 CDS YP_561915.1 91792264 4016713 complement(1030875..1031105) 1 NC_007954.1 peptidase M13 family protein 1031105 4016713 Sden_0904 Shewanella denitrificans OS217 peptidase M13 family protein YP_561915.1 1030875 R 318161 CDS YP_561916.1 91792265 4016714 1031416..1032027 1 NC_007954.1 TonB-like protein 1032027 4016714 Sden_0905 Shewanella denitrificans OS217 TonB-like protein YP_561916.1 1031416 D 318161 CDS YP_561917.1 91792266 4016715 1032228..1032791 1 NC_007954.1 NUDIX hydrolase 1032791 4016715 Sden_0906 Shewanella denitrificans OS217 NUDIX hydrolase YP_561917.1 1032228 D 318161 CDS YP_561918.1 91792267 4016716 1032929..1034401 1 NC_007954.1 carbon starvation protein CstA 1034401 4016716 Sden_0907 Shewanella denitrificans OS217 carbon starvation protein CstA YP_561918.1 1032929 D 318161 CDS YP_561919.1 91792268 4016717 1034670..1035956 1 NC_007954.1 FAD dependent oxidoreductase 1035956 4016717 Sden_0908 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_561919.1 1034670 D 318161 CDS YP_561920.1 91792269 4016718 1036041..1037507 1 NC_007954.1 succinic semialdehyde dehydrogenase 1037507 4016718 Sden_0909 Shewanella denitrificans OS217 succinic semialdehyde dehydrogenase YP_561920.1 1036041 D 318161 CDS YP_561921.1 91792270 4016719 1037517..1038794 1 NC_007954.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1038794 4016719 Sden_0910 Shewanella denitrificans OS217 4-aminobutyrate aminotransferase YP_561921.1 1037517 D 318161 CDS YP_561922.1 91792271 4016817 1039093..1041210 1 NC_007954.1 chemotaxis sensory transducer 1041210 4016817 Sden_0911 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_561922.1 1039093 D 318161 CDS YP_561923.1 91792272 4016818 1041395..1041913 1 NC_007954.1 avidin/streptavidin 1041913 4016818 Sden_0912 Shewanella denitrificans OS217 avidin/streptavidin YP_561923.1 1041395 D 318161 CDS YP_561924.1 91792273 4016819 1042141..1042455 1 NC_007954.1 cupin 2, barrel 1042455 4016819 Sden_0913 Shewanella denitrificans OS217 cupin 2, barrel YP_561924.1 1042141 D 318161 CDS YP_561925.1 91792274 4016820 complement(1042522..1043292) 1 NC_007954.1 EAL domain-containing protein 1043292 4016820 Sden_0914 Shewanella denitrificans OS217 EAL domain-containing protein YP_561925.1 1042522 R 318161 CDS YP_561926.1 91792275 4016821 complement(1043911..1044786) 1 NC_007954.1 hypothetical protein 1044786 4016821 Sden_0915 Shewanella denitrificans OS217 hypothetical protein YP_561926.1 1043911 R 318161 CDS YP_561927.1 91792276 4016822 complement(1046424..1047371) 1 NC_007954.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1047371 4016822 Sden_0916 Shewanella denitrificans OS217 ribose-phosphate pyrophosphokinase YP_561927.1 1046424 R 318161 CDS YP_561928.1 91792277 4016823 complement(1047463..1048317) 1 NC_007954.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1048317 ipk 4016823 ipk Shewanella denitrificans OS217 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_561928.1 1047463 R 318161 CDS YP_561929.1 91792278 4016824 complement(1048395..1049006) 1 NC_007954.1 outer membrane lipoprotein LolB 1049006 4016824 Sden_0918 Shewanella denitrificans OS217 outer membrane lipoprotein LolB YP_561929.1 1048395 R 318161 CDS YP_561930.1 91792279 4016825 1049263..1050513 1 NC_007954.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1050513 hemA 4016825 hemA Shewanella denitrificans OS217 glutamyl-tRNA reductase YP_561930.1 1049263 D 318161 CDS YP_561931.1 91792280 4016826 1050528..1051613 1 NC_007954.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1051613 prfA 4016826 prfA Shewanella denitrificans OS217 peptide chain release factor 1 YP_561931.1 1050528 D 318161 CDS YP_561932.1 91792281 4016827 1051623..1052477 1 NC_007954.1 HemK family modification methylase 1052477 4016827 Sden_0921 Shewanella denitrificans OS217 HemK family modification methylase YP_561932.1 1051623 D 318161 CDS YP_561933.1 91792282 4016828 1052597..1052983 1 NC_007954.1 invasion gene expression up-regulator, SirB 1052983 4016828 Sden_0922 Shewanella denitrificans OS217 invasion gene expression up-regulator, SirB YP_561933.1 1052597 D 318161 CDS YP_561934.1 91792283 4016829 1052993..1053775 1 NC_007954.1 hypothetical protein 1053775 4016829 Sden_0923 Shewanella denitrificans OS217 hypothetical protein YP_561934.1 1052993 D 318161 CDS YP_561935.1 91792284 4016830 1053879..1055126 1 NC_007954.1 hypothetical protein 1055126 4016830 Sden_0924 Shewanella denitrificans OS217 hypothetical protein YP_561935.1 1053879 D 318161 CDS YP_561936.1 91792285 4016831 1055139..1055999 1 NC_007954.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1055999 4016831 Sden_0925 Shewanella denitrificans OS217 2-dehydro-3-deoxyphosphooctonate aldolase YP_561936.1 1055139 D 318161 CDS YP_561937.1 91792286 4016832 1056239..1056775 1 NC_007954.1 GCN5-related N-acetyltransferase 1056775 4016832 Sden_0926 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_561937.1 1056239 D 318161 CDS YP_561938.1 91792287 4016833 1057154..1057366 1 NC_007954.1 cold-shock protein, DNA-binding 1057366 4016833 Sden_0927 Shewanella denitrificans OS217 cold-shock protein, DNA-binding YP_561938.1 1057154 D 318161 CDS YP_561939.1 91792288 4016834 complement(1057570..1058280) 1 NC_007954.1 hypothetical protein 1058280 4016834 Sden_0928 Shewanella denitrificans OS217 hypothetical protein YP_561939.1 1057570 R 318161 CDS YP_561940.1 91792289 4016835 complement(1058657..1059886) 1 NC_007954.1 hypothetical protein 1059886 4016835 Sden_0929 Shewanella denitrificans OS217 hypothetical protein YP_561940.1 1058657 R 318161 CDS YP_561941.1 91792290 4016836 complement(1060449..1061933) 1 NC_007954.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1061933 pntB 4016836 pntB Shewanella denitrificans OS217 pyridine nucleotide transhydrogenase YP_561941.1 1060449 R 318161 CDS YP_561942.1 91792291 4016876 complement(1061945..1063501) 1 NC_007954.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1063501 pntA 4016876 pntA Shewanella denitrificans OS217 NAD(P) transhydrogenase subunit alpha YP_561942.1 1061945 R 318161 CDS YP_561943.1 91792292 4016877 1063845..1065644 1 NC_007954.1 sulfite reductase (NADPH) flavoprotein, alpha chain 1065644 4016877 Sden_0932 Shewanella denitrificans OS217 sulfite reductase (NADPH) flavoprotein, alpha chain YP_561943.1 1063845 D 318161 CDS YP_561944.1 91792293 4016878 1065748..1067436 1 NC_007954.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1067436 4016878 Sden_0933 Shewanella denitrificans OS217 sulfite reductase subunit beta YP_561944.1 1065748 D 318161 CDS YP_561945.1 91792294 4016879 1067429..1068208 1 NC_007954.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1068208 4016879 Sden_0934 Shewanella denitrificans OS217 phosphoadenosine phosphosulfate reductase YP_561945.1 1067429 D 318161 CDS YP_561946.1 91792295 4016880 1068888..1069304 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 1069304 4016880 Sden_0935 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_561946.1 1068888 D 318161 CDS YP_561947.1 91792296 4016881 1069402..1069785 1 NC_007954.1 hypothetical protein 1069785 4016881 Sden_0936 Shewanella denitrificans OS217 hypothetical protein YP_561947.1 1069402 D 318161 CDS YP_561948.1 91792297 4016882 1069937..1071655 1 NC_007954.1 hypothetical protein 1071655 4016882 Sden_0937 Shewanella denitrificans OS217 hypothetical protein YP_561948.1 1069937 D 318161 CDS YP_561949.1 91792298 4016883 complement(1071829..1072302) 1 NC_007954.1 blue (type1) copper domain-containing protein 1072302 4016883 Sden_0938 Shewanella denitrificans OS217 blue (type1) copper domain-containing protein YP_561949.1 1071829 R 318161 CDS YP_561950.1 91792299 4016884 complement(1072492..1073400) 1 NC_007954.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 1073400 4016884 Sden_0939 Shewanella denitrificans OS217 ribokinase YP_561950.1 1072492 R 318161 CDS YP_561951.2 162210778 4016885 complement(1073470..1074405) 1 NC_007954.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 1074405 rihA 4016885 rihA Shewanella denitrificans OS217 ribonucleoside hydrolase 1 YP_561951.2 1073470 R 318161 CDS YP_561952.1 91792301 4016886 1074786..1075310 1 NC_007954.1 hypothetical protein 1075310 4016886 Sden_0941 Shewanella denitrificans OS217 hypothetical protein YP_561952.1 1074786 D 318161 CDS YP_561953.1 91792302 4016887 complement(1075356..1076363) 1 NC_007954.1 GGDEF domain-containing protein 1076363 4016887 Sden_0942 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561953.1 1075356 R 318161 CDS YP_561954.1 91792303 4016888 complement(1077171..1077578) 1 NC_007954.1 hypothetical protein 1077578 4016888 Sden_0943 Shewanella denitrificans OS217 hypothetical protein YP_561954.1 1077171 R 318161 CDS YP_561955.1 91792304 4016889 complement(1077649..1081044) 1 NC_007954.1 transcriptional regulatory protein-like protein 1081044 4016889 Sden_0944 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_561955.1 1077649 R 318161 CDS YP_561956.1 91792305 4016890 complement(1081251..1082855) 1 NC_007954.1 amino acid/peptide transporter 1082855 4016890 Sden_0945 Shewanella denitrificans OS217 amino acid/peptide transporter YP_561956.1 1081251 R 318161 CDS YP_561957.1 91792306 4016891 complement(1082947..1083759) 1 NC_007954.1 hypothetical protein 1083759 4016891 Sden_0946 Shewanella denitrificans OS217 hypothetical protein YP_561957.1 1082947 R 318161 CDS YP_561958.1 91792307 4016892 complement(1083769..1084494) 1 NC_007954.1 hypothetical protein 1084494 4016892 Sden_0947 Shewanella denitrificans OS217 hypothetical protein YP_561958.1 1083769 R 318161 CDS YP_561959.1 91792308 4016893 complement(1084526..1086385) 1 NC_007954.1 amidohydrolase 3 1086385 4016893 Sden_0948 Shewanella denitrificans OS217 amidohydrolase 3 YP_561959.1 1084526 R 318161 CDS YP_561960.1 91792309 4016894 1086541..1087341 1 NC_007954.1 uroporphyrin-III C/tetrapyrrole methyltransferase 1087341 4016894 Sden_0949 Shewanella denitrificans OS217 uroporphyrin-III C/tetrapyrrole methyltransferase YP_561960.1 1086541 D 318161 CDS YP_561961.1 91792310 4016552 1087462..1087737 1 NC_007954.1 hypothetical protein 1087737 4016552 Sden_0950 Shewanella denitrificans OS217 hypothetical protein YP_561961.1 1087462 D 318161 CDS YP_561962.1 91792311 4016553 1088024..1090108 1 NC_007954.1 GGDEF domain-containing protein 1090108 4016553 Sden_0951 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561962.1 1088024 D 318161 CDS YP_561963.1 91792312 4016554 1090101..1091183 1 NC_007954.1 hypothetical protein 1091183 4016554 Sden_0952 Shewanella denitrificans OS217 hypothetical protein YP_561963.1 1090101 D 318161 CDS YP_561964.1 91792313 4016555 1091467..1092669 1 NC_007954.1 hypothetical protein 1092669 4016555 Sden_0953 Shewanella denitrificans OS217 hypothetical protein YP_561964.1 1091467 D 318161 CDS YP_561965.1 91792314 4016556 1093018..1094373 1 NC_007954.1 peptidase S41 1094373 4016556 Sden_0954 Shewanella denitrificans OS217 peptidase S41 YP_561965.1 1093018 D 318161 CDS YP_561966.1 91792315 4016557 complement(1094511..1095428) 1 NC_007954.1 phospholipase A1 1095428 4016557 Sden_0955 Shewanella denitrificans OS217 phospholipase A1 YP_561966.1 1094511 R 318161 CDS YP_561967.1 91792316 4016558 complement(1095679..1096425) 1 NC_007954.1 TraT complement resistance 1096425 4016558 Sden_0956 Shewanella denitrificans OS217 TraT complement resistance YP_561967.1 1095679 R 318161 CDS YP_561968.1 91792317 4016559 complement(1096462..1096803) 1 NC_007954.1 orphan protein 1096803 4016559 Sden_0957 Shewanella denitrificans OS217 orphan protein YP_561968.1 1096462 R 318161 CDS YP_561969.1 91792318 4016560 1097108..1097929 1 NC_007954.1 uroporphyrin-III C-methyltransferase 1097929 4016560 Sden_0958 Shewanella denitrificans OS217 uroporphyrin-III C-methyltransferase YP_561969.1 1097108 D 318161 CDS YP_561970.1 91792319 4016561 1097986..1098894 1 NC_007954.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1098894 4016561 Sden_0959 Shewanella denitrificans OS217 sulfate adenylyltransferase subunit 2 YP_561970.1 1097986 D 318161 CDS YP_561971.1 91792320 4016562 1098959..1100401 1 NC_007954.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1100401 cysN 4016562 cysN Shewanella denitrificans OS217 sulfate adenylyltransferase subunit 1 YP_561971.1 1098959 D 318161 CDS YP_561972.1 91792321 4016563 1100405..1102129 1 NC_007954.1 TrkA-C 1102129 4016563 Sden_0961 Shewanella denitrificans OS217 TrkA-C YP_561972.1 1100405 D 318161 CDS YP_561973.1 91792322 4016564 1102172..1102789 1 NC_007954.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1102789 4016564 Sden_0962 Shewanella denitrificans OS217 adenylylsulfate kinase YP_561973.1 1102172 D 318161 CDS YP_561974.1 91792323 4016565 1103293..1103958 1 NC_007954.1 MOSC domain-containing protein 1103958 4016565 Sden_0963 Shewanella denitrificans OS217 MOSC domain-containing protein YP_561974.1 1103293 D 318161 CDS YP_561975.1 91792324 4016566 1104179..1104781 1 NC_007954.1 hypothetical protein 1104781 4016566 Sden_0964 Shewanella denitrificans OS217 hypothetical protein YP_561975.1 1104179 D 318161 CDS YP_561976.1 91792325 4016567 1106924..1107316 1 NC_007954.1 hypothetical protein 1107316 4016567 Sden_0965 Shewanella denitrificans OS217 hypothetical protein YP_561976.1 1106924 D 318161 CDS YP_561977.1 91792326 4016568 complement(1108580..1109395) 1 NC_007954.1 hypothetical protein 1109395 4016568 Sden_0966 Shewanella denitrificans OS217 hypothetical protein YP_561977.1 1108580 R 318161 CDS YP_561978.1 91792327 4016569 complement(1109392..1110351) 1 NC_007954.1 hypothetical protein 1110351 4016569 Sden_0967 Shewanella denitrificans OS217 hypothetical protein YP_561978.1 1109392 R 318161 CDS YP_561979.1 91792328 4016570 complement(1110491..1110949) 1 NC_007954.1 lipoprotein 1110949 4016570 Sden_0968 Shewanella denitrificans OS217 lipoprotein YP_561979.1 1110491 R 318161 CDS YP_561980.1 91792329 4016571 1111263..1111673 1 NC_007954.1 curli production assembly/transport component CsgE 1111673 4016571 Sden_0969 Shewanella denitrificans OS217 curli production assembly/transport component CsgE YP_561980.1 1111263 D 318161 CDS YP_561981.1 91792330 4016740 1111684..1112091 1 NC_007954.1 curli production assembly/transport component CsgF 1112091 4016740 Sden_0970 Shewanella denitrificans OS217 curli production assembly/transport component CsgF YP_561981.1 1111684 D 318161 CDS YP_561982.1 91792331 4016741 1112091..1112888 1 NC_007954.1 curli production assembly/transport component CsgG 1112888 4016741 Sden_0971 Shewanella denitrificans OS217 curli production assembly/transport component CsgG YP_561982.1 1112091 D 318161 CDS YP_561983.1 91792332 4016742 complement(1112941..1113855) 1 NC_007954.1 GGDEF domain-containing protein 1113855 4016742 Sden_0972 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_561983.1 1112941 R 318161 CDS YP_561984.1 91792333 4016743 1113996..1114886 1 NC_007954.1 esterase 1114886 4016743 Sden_0973 Shewanella denitrificans OS217 esterase YP_561984.1 1113996 D 318161 CDS YP_561985.1 91792334 4016744 complement(1114940..1115557) 1 NC_007954.1 regulatory protein, TetR 1115557 4016744 Sden_0974 Shewanella denitrificans OS217 regulatory protein, TetR YP_561985.1 1114940 R 318161 CDS YP_561986.1 91792335 4016745 complement(1115631..1117052) 1 NC_007954.1 aldehyde dehydrogenase 1117052 4016745 Sden_0975 Shewanella denitrificans OS217 aldehyde dehydrogenase YP_561986.1 1115631 R 318161 CDS YP_561987.1 91792336 4016746 1117291..1117722 1 NC_007954.1 hypothetical protein 1117722 4016746 Sden_0976 Shewanella denitrificans OS217 hypothetical protein YP_561987.1 1117291 D 318161 CDS YP_561988.1 91792337 4016747 complement(1117853..1118422) 1 NC_007954.1 hypothetical protein 1118422 4016747 Sden_0977 Shewanella denitrificans OS217 hypothetical protein YP_561988.1 1117853 R 318161 CDS YP_561989.1 91792338 4016748 1118529..1118834 1 NC_007954.1 hypothetical protein 1118834 4016748 Sden_0978 Shewanella denitrificans OS217 hypothetical protein YP_561989.1 1118529 D 318161 CDS YP_561990.1 91792339 4016749 1118839..1119606 1 NC_007954.1 2OG-Fe(II) oxygenase 1119606 4016749 Sden_0979 Shewanella denitrificans OS217 2OG-Fe(II) oxygenase YP_561990.1 1118839 D 318161 CDS YP_561991.1 91792340 4016750 1119742..1120041 1 NC_007954.1 BolA-like protein 1120041 4016750 Sden_0980 Shewanella denitrificans OS217 BolA-like protein YP_561991.1 1119742 D 318161 CDS YP_561992.1 91792341 4016751 1120219..1120728 1 NC_007954.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1120728 4016751 Sden_0981 Shewanella denitrificans OS217 S-ribosylhomocysteinase YP_561992.1 1120219 D 318161 CDS YP_561993.1 91792342 4016752 1120953..1122287 1 NC_007954.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1122287 4016752 Sden_0982 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit A YP_561993.1 1120953 D 318161 CDS YP_561994.1 91792343 4016753 1122287..1123486 1 NC_007954.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1123486 4016753 Sden_0983 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit B YP_561994.1 1122287 D 318161 CDS YP_561995.1 91792344 4016754 1123479..1124276 1 NC_007954.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1124276 4016754 Sden_0984 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit C YP_561995.1 1123479 D 318161 CDS YP_561996.1 91792345 4016755 1124276..1124908 1 NC_007954.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1124908 4016755 Sden_0985 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit D YP_561996.1 1124276 D 318161 CDS YP_561997.1 91792346 4016756 1124914..1125522 1 NC_007954.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1125522 4016756 Sden_0986 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit E YP_561997.1 1124914 D 318161 CDS YP_561998.1 91792347 4016757 1125569..1126795 1 NC_007954.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1126795 4016757 Sden_0987 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit F YP_561998.1 1125569 D 318161 CDS YP_561999.1 91792348 4016758 1126820..1127932 1 NC_007954.1 ApbE-like lipoprotein 1127932 4016758 Sden_0988 Shewanella denitrificans OS217 ApbE-like lipoprotein YP_561999.1 1126820 D 318161 CDS YP_562000.1 91792349 4017586 1127946..1128170 1 NC_007954.1 hypothetical protein 1128170 4017586 Sden_0989 Shewanella denitrificans OS217 hypothetical protein YP_562000.1 1127946 D 318161 CDS YP_562001.1 91792350 4017587 1128386..1128856 1 NC_007954.1 bacterioferritin 1128856 4017587 Sden_0990 Shewanella denitrificans OS217 bacterioferritin YP_562001.1 1128386 D 318161 CDS YP_562002.1 91792351 4017588 1128921..1129388 1 NC_007954.1 bacterioferritin 1129388 4017588 Sden_0991 Shewanella denitrificans OS217 bacterioferritin YP_562002.1 1128921 D 318161 CDS YP_562003.1 91792352 4017589 1129560..1130378 1 NC_007954.1 peptidase M48, Ste24p 1130378 4017589 Sden_0992 Shewanella denitrificans OS217 peptidase M48, Ste24p YP_562003.1 1129560 D 318161 CDS YP_562004.1 91792353 4017590 1130476..1131093 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 1131093 4017590 Sden_0993 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_562004.1 1130476 D 318161 CDS YP_562005.1 91792354 4017591 1131181..1131993 1 NC_007954.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1131993 4017591 Sden_0994 Shewanella denitrificans OS217 dihydrodipicolinate reductase YP_562005.1 1131181 D 318161 CDS YP_562006.1 91792355 4017592 1132173..1133318 1 NC_007954.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1133318 4017592 Sden_0995 Shewanella denitrificans OS217 carbamoyl phosphate synthase small subunit YP_562006.1 1132173 D 318161 CDS YP_562007.1 91792356 4017593 1133346..1136573 1 NC_007954.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1136573 carB 4017593 carB Shewanella denitrificans OS217 carbamoyl phosphate synthase large subunit YP_562007.1 1133346 D 318161 CDS YP_562008.1 91792357 4017594 1136835..1137311 1 NC_007954.1 transcription elongation factor GreA 1137311 4017594 Sden_0997 Shewanella denitrificans OS217 transcription elongation factor GreA YP_562008.1 1136835 D 318161 CDS YP_562009.1 91792358 4017595 complement(1137462..1137761) 1 NC_007954.1 hypothetical protein 1137761 4017595 Sden_0998 Shewanella denitrificans OS217 hypothetical protein YP_562009.1 1137462 R 318161 CDS YP_562010.1 91792359 4017596 1137852..1138481 1 NC_007954.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1138481 rrmJ 4017596 rrmJ Shewanella denitrificans OS217 23S rRNA methyltransferase J YP_562010.1 1137852 D 318161 CDS YP_562011.1 91792360 4017597 1138527..1140497 1 NC_007954.1 ATP-dependent metalloprotease FtsH 1140497 4017597 Sden_1000 Shewanella denitrificans OS217 ATP-dependent metalloprotease FtsH YP_562011.1 1138527 D 318161 CDS YP_562012.1 91792361 4017598 1140599..1141447 1 NC_007954.1 dihydropteroate synthase 1141447 4017598 Sden_1001 Shewanella denitrificans OS217 dihydropteroate synthase YP_562012.1 1140599 D 318161 CDS YP_562013.1 91792362 4017599 1141540..1142877 1 NC_007954.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1142877 glmM 4017599 glmM Shewanella denitrificans OS217 phosphoglucosamine mutase YP_562013.1 1141540 D 318161 CDS YP_562014.1 91792363 4017600 1143049..1143831 1 NC_007954.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1143831 4017600 Sden_1003 Shewanella denitrificans OS217 triosephosphate isomerase YP_562014.1 1143049 D 318161 CDS YP_562015.1 91792364 4017601 1143835..1144167 1 NC_007954.1 preprotein translocase subunit SecG 1144167 secG 4017601 secG Shewanella denitrificans OS217 preprotein translocase subunit SecG YP_562015.1 1143835 D 318161 CDS YP_562016.1 91792365 4016572 1144593..1145048 1 NC_007954.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1145048 4016572 Sden_1005 Shewanella denitrificans OS217 hypothetical protein YP_562016.1 1144593 D 318161 CDS YP_562017.1 91792366 4016573 1145078..1146577 1 NC_007954.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1146577 nusA 4016573 nusA Shewanella denitrificans OS217 transcription elongation factor NusA YP_562017.1 1145078 D 318161 CDS YP_562018.1 91792367 4016574 1146603..1149257 1 NC_007954.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1149257 infB 4016574 infB Shewanella denitrificans OS217 translation initiation factor IF-2 YP_562018.1 1146603 D 318161 CDS YP_562019.1 91792368 4016575 1149329..1149757 1 NC_007954.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1149757 rbfA 4016575 rbfA Shewanella denitrificans OS217 ribosome-binding factor A YP_562019.1 1149329 D 318161 CDS YP_562020.1 91792369 4016576 1149757..1150710 1 NC_007954.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1150710 truB 4016576 truB Shewanella denitrificans OS217 tRNA pseudouridine synthase B YP_562020.1 1149757 D 318161 CDS YP_562021.1 91792370 4016578 1150872..1151141 1 NC_007954.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1151141 rpsO 4016578 rpsO Shewanella denitrificans OS217 30S ribosomal protein S15 YP_562021.1 1150872 D 318161 CDS YP_562022.1 91792371 4016579 complement(1151319..1152779) 1 NC_007954.1 peptidase M20C, Xaa-His dipeptidase 1152779 4016579 Sden_1011 Shewanella denitrificans OS217 peptidase M20C, Xaa-His dipeptidase YP_562022.1 1151319 R 318161 CDS YP_562023.1 91792372 4016580 1153661..1154950 1 NC_007954.1 xanthine/uracil/vitamin C permease 1154950 4016580 Sden_1012 Shewanella denitrificans OS217 xanthine/uracil/vitamin C permease YP_562023.1 1153661 D 318161 CDS YP_562024.1 91792373 4016581 1155975..1156589 1 NC_007954.1 hypothetical protein 1156589 4016581 Sden_1013 Shewanella denitrificans OS217 hypothetical protein YP_562024.1 1155975 D 318161 CDS YP_562025.1 91792374 4016582 1156936..1157625 1 NC_007954.1 pseudouridine synthase 1157625 4016582 Sden_1014 Shewanella denitrificans OS217 pseudouridine synthase YP_562025.1 1156936 D 318161 CDS YP_562026.1 91792375 4016583 1157738..1158259 1 NC_007954.1 NADPH-dependent FMN reductase 1158259 4016583 Sden_1015 Shewanella denitrificans OS217 NADPH-dependent FMN reductase YP_562026.1 1157738 D 318161 CDS YP_562027.1 91792376 4016584 complement(1158394..1160286) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 1160286 4016584 Sden_1016 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_562027.1 1158394 R 318161 CDS YP_562028.1 91792377 4016585 1160693..1161439 1 NC_007954.1 hypothetical protein 1161439 4016585 Sden_1017 Shewanella denitrificans OS217 hypothetical protein YP_562028.1 1160693 D 318161 CDS YP_562029.1 91792378 4016586 complement(1161442..1163478) 1 NC_007954.1 GGDEF domain-containing protein 1163478 4016586 Sden_1018 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562029.1 1161442 R 318161 CDS YP_562030.1 91792379 4016587 1164035..1166140 1 NC_007954.1 polynucleotide phosphorylase/polyadenylase 1166140 4016587 Sden_1019 Shewanella denitrificans OS217 polynucleotide phosphorylase/polyadenylase YP_562030.1 1164035 D 318161 CDS YP_562031.1 91792380 4016588 1166287..1167183 1 NC_007954.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1167183 4016588 Sden_1020 Shewanella denitrificans OS217 lipoprotein NlpI YP_562031.1 1166287 D 318161 CDS YP_562032.1 91792381 4016589 1167403..1168986 1 NC_007954.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1168986 prfC 4016589 prfC Shewanella denitrificans OS217 peptide chain release factor 3 YP_562032.1 1167403 D 318161 CDS YP_562033.1 91792382 4017067 1169080..1169847 1 NC_007954.1 TatD-related deoxyribonuclease 1169847 4017067 Sden_1022 Shewanella denitrificans OS217 TatD-related deoxyribonuclease YP_562033.1 1169080 D 318161 CDS YP_562034.1 91792383 4017068 1170024..1171286 1 NC_007954.1 nucleoside transporter 1171286 4017068 Sden_1023 Shewanella denitrificans OS217 nucleoside transporter YP_562034.1 1170024 D 318161 CDS YP_562035.1 91792384 4017069 1171613..1172500 1 NC_007954.1 nucleoside-specific channel-forming protein, Tsx 1172500 4017069 Sden_1024 Shewanella denitrificans OS217 nucleoside-specific channel-forming protein, Tsx YP_562035.1 1171613 D 318161 CDS YP_562036.1 91792385 4017070 1172874..1173650 1 NC_007954.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1173650 4017070 Sden_1025 Shewanella denitrificans OS217 deoxyribose-phosphate aldolase YP_562036.1 1172874 D 318161 CDS YP_562037.1 91792386 4017071 1173774..1175105 1 NC_007954.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1175105 deoA 4017071 deoA Shewanella denitrificans OS217 thymidine phosphorylase YP_562037.1 1173774 D 318161 CDS YP_562038.1 91792387 4017072 1175117..1176334 1 NC_007954.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1176334 4017072 Sden_1027 Shewanella denitrificans OS217 phosphopentomutase YP_562038.1 1175117 D 318161 CDS YP_562039.1 91792388 4017073 1176420..1177130 1 NC_007954.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1177130 deoD 4017073 deoD Shewanella denitrificans OS217 purine nucleoside phosphorylase YP_562039.1 1176420 D 318161 CDS YP_562040.1 91792389 4017074 1177420..1178319 1 NC_007954.1 hypothetical protein 1178319 4017074 Sden_1029 Shewanella denitrificans OS217 hypothetical protein YP_562040.1 1177420 D 318161 CDS YP_562041.1 91792390 4017075 complement(1178778..1180223) 1 NC_007954.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 1180223 4017075 Sden_1030 Shewanella denitrificans OS217 N-acetylglucosamine-binding protein A YP_562041.1 1178778 R 318161 CDS YP_562042.1 91792391 4017076 complement(1180646..1181242) 1 NC_007954.1 membrane protein 1181242 4017076 Sden_1031 Shewanella denitrificans OS217 membrane protein YP_562042.1 1180646 R 318161 CDS YP_562043.1 91792392 4017077 1181425..1182471 1 NC_007954.1 phosphoserine phosphatase SerB 1182471 4017077 Sden_1032 Shewanella denitrificans OS217 phosphoserine phosphatase SerB YP_562043.1 1181425 D 318161 CDS YP_562044.1 91792393 4017078 1182706..1183617 1 NC_007954.1 hypothetical protein 1183617 4017078 Sden_1033 Shewanella denitrificans OS217 hypothetical protein YP_562044.1 1182706 D 318161 CDS YP_562045.1 91792394 4017079 complement(1183696..1186086) 1 NC_007954.1 type IV pilus assembly PilZ 1186086 4017079 Sden_1034 Shewanella denitrificans OS217 type IV pilus assembly PilZ YP_562045.1 1183696 R 318161 CDS YP_562046.1 91792395 4017080 1186261..1187637 1 NC_007954.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1187637 4017080 Sden_1035 Shewanella denitrificans OS217 DNA repair protein RadA YP_562046.1 1186261 D 318161 CDS YP_562047.1 91792396 4017081 complement(1187745..1188122) 1 NC_007954.1 type IV pilus assembly PilZ 1188122 4017081 Sden_1036 Shewanella denitrificans OS217 type IV pilus assembly PilZ YP_562047.1 1187745 R 318161 CDS YP_562048.1 91792397 4017082 complement(1188447..1189805) 1 NC_007954.1 nucleoside recognition 1189805 4017082 Sden_1037 Shewanella denitrificans OS217 nucleoside recognition YP_562048.1 1188447 R 318161 CDS YP_562049.1 91792398 4017083 complement(1190151..1191020) 1 NC_007954.1 peptidase U32 1191020 4017083 Sden_1038 Shewanella denitrificans OS217 peptidase U32 YP_562049.1 1190151 R 318161 CDS YP_562050.1 91792399 4017084 complement(1191076..1192077) 1 NC_007954.1 peptidase U32 1192077 4017084 Sden_1039 Shewanella denitrificans OS217 peptidase U32 YP_562050.1 1191076 R 318161 CDS YP_562051.1 91792400 4017085 1192225..1192770 1 NC_007954.1 hypothetical protein 1192770 4017085 Sden_1040 Shewanella denitrificans OS217 hypothetical protein YP_562051.1 1192225 D 318161 CDS YP_562052.1 91792401 4017086 complement(1192907..1193287) 1 NC_007954.1 hypothetical protein 1193287 4017086 Sden_1041 Shewanella denitrificans OS217 hypothetical protein YP_562052.1 1192907 R 318161 CDS YP_562053.1 91792402 4017549 1193534..1193914 1 NC_007954.1 hypothetical protein 1193914 4017549 Sden_1042 Shewanella denitrificans OS217 hypothetical protein YP_562053.1 1193534 D 318161 CDS YP_562054.1 91792403 4017550 1193930..1194898 1 NC_007954.1 hypothetical protein 1194898 4017550 Sden_1043 Shewanella denitrificans OS217 hypothetical protein YP_562054.1 1193930 D 318161 CDS YP_562055.1 91792404 4017551 complement(1194911..1195168) 1 NC_007954.1 4Fe-4S ferredoxin, iron-sulfur binding 1195168 4017551 Sden_1044 Shewanella denitrificans OS217 4Fe-4S ferredoxin, iron-sulfur binding YP_562055.1 1194911 R 318161 CDS YP_562056.1 91792405 4017552 complement(1195168..1196577) 1 NC_007954.1 peptidase U32 1196577 4017552 Sden_1045 Shewanella denitrificans OS217 peptidase U32 YP_562056.1 1195168 R 318161 CDS YP_562057.1 91792406 4017553 1196861..1197703 1 NC_007954.1 hypothetical protein 1197703 4017553 Sden_1046 Shewanella denitrificans OS217 hypothetical protein YP_562057.1 1196861 D 318161 CDS YP_562058.1 91792407 4017554 1197760..1199262 1 NC_007954.1 GGDEF domain-containing protein 1199262 4017554 Sden_1047 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562058.1 1197760 D 318161 CDS YP_562059.1 91792408 4017555 1200439..1201260 1 NC_007954.1 hypothetical protein 1201260 4017555 Sden_1048 Shewanella denitrificans OS217 hypothetical protein YP_562059.1 1200439 D 318161 CDS YP_562060.1 91792409 4017556 complement(1201196..1202005) 1 NC_007954.1 integrase catalytic subunit 1202005 4017556 Sden_1049 Shewanella denitrificans OS217 integrase catalytic subunit YP_562060.1 1201196 R 318161 CDS YP_562061.1 91792410 4017557 complement(1202065..1202355) 1 NC_007954.1 transposase IS3/IS911 1202355 4017557 Sden_1050 Shewanella denitrificans OS217 transposase IS3/IS911 YP_562061.1 1202065 R 318161 CDS YP_562062.1 91792411 4017558 complement(1202865..1203296) 1 NC_007954.1 thioesterase superfamily protein 1203296 4017558 Sden_1051 Shewanella denitrificans OS217 thioesterase superfamily protein YP_562062.1 1202865 R 318161 CDS YP_562063.1 91792412 4017559 complement(1203309..1204220) 1 NC_007954.1 amino acid ABC transporter 1204220 4017559 Sden_1052 Shewanella denitrificans OS217 amino acid ABC transporter YP_562063.1 1203309 R 318161 CDS YP_562064.1 91792413 4017560 complement(1204400..1204828) 1 NC_007954.1 regulatory proteins, AsnC/Lrp 1204828 4017560 Sden_1053 Shewanella denitrificans OS217 regulatory proteins, AsnC/Lrp YP_562064.1 1204400 R 318161 CDS YP_562065.1 91792414 4017561 1204995..1206212 1 NC_007954.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1206212 argD 4017561 argD Shewanella denitrificans OS217 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_562065.1 1204995 D 318161 CDS YP_562066.1 91792415 4017562 1206363..1207406 1 NC_007954.1 arginine N-succinyltransferase 1207406 4017562 Sden_1055 Shewanella denitrificans OS217 arginine N-succinyltransferase YP_562066.1 1206363 D 318161 CDS YP_562067.1 91792416 4017563 1207403..1208899 1 NC_007954.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1208899 astD 4017563 astD Shewanella denitrificans OS217 succinylglutamic semialdehyde dehydrogenase YP_562067.1 1207403 D 318161 CDS YP_562068.1 91792417 4017564 1209014..1209817 1 NC_007954.1 hypothetical protein 1209817 4017564 Sden_1057 Shewanella denitrificans OS217 hypothetical protein YP_562068.1 1209014 D 318161 CDS YP_562069.1 91792418 4017565 1210419..1210877 1 NC_007954.1 hypothetical protein 1210877 4017565 Sden_1058 Shewanella denitrificans OS217 hypothetical protein YP_562069.1 1210419 D 318161 CDS YP_562070.1 91792419 4017566 complement(1211562..1212194) 1 NC_007954.1 lysine exporter protein LysE/YggA 1212194 4017566 Sden_1059 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_562070.1 1211562 R 318161 CDS YP_562071.1 91792420 4017567 complement(1212390..1212956) 1 NC_007954.1 hypothetical protein 1212956 4017567 Sden_1060 Shewanella denitrificans OS217 hypothetical protein YP_562071.1 1212390 R 318161 CDS YP_562072.1 91792421 4016777 complement(1213228..1213464) 1 NC_007954.1 hypothetical protein 1213464 4016777 Sden_1061 Shewanella denitrificans OS217 hypothetical protein YP_562072.1 1213228 R 318161 CDS YP_562073.1 91792422 4016778 1214002..1214901 1 NC_007954.1 band 7 protein 1214901 4016778 Sden_1062 Shewanella denitrificans OS217 band 7 protein YP_562073.1 1214002 D 318161 CDS YP_562074.1 91792423 4016779 complement(1215110..1215850) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 1215850 4016779 Sden_1063 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_562074.1 1215110 R 318161 CDS YP_562075.1 91792424 4016780 1215925..1216512 1 NC_007954.1 transciptional regulator 1216512 4016780 Sden_1064 Shewanella denitrificans OS217 transciptional regulator YP_562075.1 1215925 D 318161 CDS YP_562076.1 91792425 4016781 complement(1216579..1217097) 1 NC_007954.1 histidine triad (HIT) protein 1217097 4016781 Sden_1065 Shewanella denitrificans OS217 histidine triad (HIT) protein YP_562076.1 1216579 R 318161 CDS YP_562077.1 91792426 4016782 complement(1217099..1218718) 1 NC_007954.1 AMP-dependent synthetase and ligase 1218718 4016782 Sden_1066 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_562077.1 1217099 R 318161 CDS YP_562078.1 91792427 4016783 complement(1218715..1220772) 1 NC_007954.1 Male sterility-like protein 1220772 4016783 Sden_1067 Shewanella denitrificans OS217 Male sterility-like protein YP_562078.1 1218715 R 318161 CDS YP_562079.1 91792428 4016784 complement(1220848..1221087) 1 NC_007954.1 hypothetical protein 1221087 4016784 Sden_1068 Shewanella denitrificans OS217 hypothetical protein YP_562079.1 1220848 R 318161 CDS YP_562080.1 91792429 4016785 complement(1221090..1221950) 1 NC_007954.1 hypothetical protein 1221950 4016785 Sden_1069 Shewanella denitrificans OS217 hypothetical protein YP_562080.1 1221090 R 318161 CDS YP_562081.1 91792430 4016786 complement(1222643..1224286) 1 NC_007954.1 AMP-dependent synthetase and ligase 1224286 4016786 Sden_1070 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_562081.1 1222643 R 318161 CDS YP_562082.1 91792431 4016787 1224877..1225653 1 NC_007954.1 extracellular solute-binding protein 1225653 4016787 Sden_1071 Shewanella denitrificans OS217 extracellular solute-binding protein YP_562082.1 1224877 D 318161 CDS YP_562083.1 91792432 4016788 complement(1225748..1226509) 1 NC_007954.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1226509 4016788 Sden_1072 Shewanella denitrificans OS217 ethanolamine ammonia-lyase small subunit YP_562083.1 1225748 R 318161 CDS YP_562084.1 91792433 4016789 complement(1226533..1227933) 1 NC_007954.1 ethanolamine ammonia lyase large subunit 1227933 4016789 Sden_1073 Shewanella denitrificans OS217 ethanolamine ammonia lyase large subunit YP_562084.1 1226533 R 318161 CDS YP_562085.1 91792434 4016790 complement(1227947..1229023) 1 NC_007954.1 spermidine/putrescine-binding periplasmic protein-like protein 1229023 4016790 Sden_1074 Shewanella denitrificans OS217 spermidine/putrescine-binding periplasmic protein-like protein YP_562085.1 1227947 R 318161 CDS YP_562086.1 91792435 4016791 1229482..1230945 1 NC_007954.1 phospholipase D/transphosphatidylase 1230945 4016791 Sden_1075 Shewanella denitrificans OS217 phospholipase D/transphosphatidylase YP_562086.1 1229482 D 318161 CDS YP_562087.1 91792436 4016792 1231267..1232172 1 NC_007954.1 ABC transporter related 1232172 4016792 Sden_1076 Shewanella denitrificans OS217 ABC transporter related YP_562087.1 1231267 D 318161 CDS YP_562088.1 91792437 4016793 1232172..1233713 1 NC_007954.1 hypothetical protein 1233713 4016793 Sden_1077 Shewanella denitrificans OS217 hypothetical protein YP_562088.1 1232172 D 318161 CDS YP_562089.1 91792438 4016794 1233883..1234497 1 NC_007954.1 lysine exporter protein LysE/YggA 1234497 4016794 Sden_1078 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_562089.1 1233883 D 318161 CDS YP_562090.1 91792439 4016795 1234701..1235483 1 NC_007954.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1235483 4016795 Sden_1079 Shewanella denitrificans OS217 prolipoprotein diacylglyceryl transferase YP_562090.1 1234701 D 318161 CDS YP_562091.1 91792440 4016796 complement(1235643..1236227) 1 NC_007954.1 hypothetical protein 1236227 4016796 Sden_1080 Shewanella denitrificans OS217 hypothetical protein YP_562091.1 1235643 R 318161 CDS YP_562092.1 91792441 4017364 complement(1236275..1237288) 1 NC_007954.1 2-dehydropantoate 2-reductase 1237288 4017364 Sden_1081 Shewanella denitrificans OS217 2-dehydropantoate 2-reductase YP_562092.1 1236275 R 318161 CDS YP_562093.1 91792442 4017365 complement(1237499..1238650) 1 NC_007954.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1238650 4017365 Sden_1082 Shewanella denitrificans OS217 S-adenosylmethionine synthetase YP_562093.1 1237499 R 318161 CDS YP_562094.1 91792443 4017366 1239191..1241185 1 NC_007954.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1241185 4017366 Sden_1083 Shewanella denitrificans OS217 transketolase YP_562094.1 1239191 D 318161 CDS YP_562095.2 228950557 4017367 1241359..1242387 1 NC_007954.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 1242387 4017367 Sden_1084 Shewanella denitrificans OS217 erythrose 4-phosphate dehydrogenase YP_562095.2 1241359 D 318161 CDS YP_562096.1 91792445 4017368 1242603..1243778 1 NC_007954.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1243778 pgk 4017368 pgk Shewanella denitrificans OS217 phosphoglycerate kinase YP_562096.1 1242603 D 318161 CDS YP_562097.1 91792446 4017369 1244014..1245081 1 NC_007954.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1245081 4017369 Sden_1086 Shewanella denitrificans OS217 fructose-1,6-bisphosphate aldolase YP_562097.1 1244014 D 318161 CDS YP_562098.1 91792447 4017370 1245229..1245969 1 NC_007954.1 hypothetical protein 1245969 4017370 Sden_1087 Shewanella denitrificans OS217 hypothetical protein YP_562098.1 1245229 D 318161 CDS YP_562099.1 91792448 4017371 1246071..1246958 1 NC_007954.1 transposase, IS4 1246958 4017371 Sden_1088 Shewanella denitrificans OS217 transposase, IS4 YP_562099.1 1246071 D 318161 CDS YP_562100.1 91792449 4017372 complement(1247056..1249143) 1 NC_007954.1 endothelin-converting protein 1 1249143 4017372 Sden_1089 Shewanella denitrificans OS217 endothelin-converting protein 1 YP_562100.1 1247056 R 318161 CDS YP_562101.1 91792450 4017373 1249505..1250194 1 NC_007954.1 pseudouridine synthase, Rsu 1250194 4017373 Sden_1090 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_562101.1 1249505 D 318161 CDS YP_562102.1 91792451 4017374 1250909..1252771 1 NC_007954.1 chemotaxis sensory transducer 1252771 4017374 Sden_1091 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_562102.1 1250909 D 318161 CDS YP_562103.1 91792452 4017375 complement(1252906..1253565) 1 NC_007954.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1253565 4017375 Sden_1092 Shewanella denitrificans OS217 ribose-5-phosphate isomerase A YP_562103.1 1252906 R 318161 CDS YP_562104.1 91792453 4017376 complement(1253674..1254489) 1 NC_007954.1 MscS mechanosensitive ion channel 1254489 4017376 Sden_1093 Shewanella denitrificans OS217 MscS mechanosensitive ion channel YP_562104.1 1253674 R 318161 CDS YP_562105.1 91792454 4017377 complement(1254499..1255686) 1 NC_007954.1 hypothetical protein 1255686 4017377 Sden_1094 Shewanella denitrificans OS217 hypothetical protein YP_562105.1 1254499 R 318161 CDS YP_562106.1 91792455 4017378 1255974..1256870 1 NC_007954.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1256870 pbpG 4017378 pbpG Shewanella denitrificans OS217 D-alanyl-D-alanine endopeptidase YP_562106.1 1255974 D 318161 CDS YP_562107.1 91792456 4017379 complement(1256952..1258208) 1 NC_007954.1 lipolytic enzyme, G-D-S-L 1258208 4017379 Sden_1096 Shewanella denitrificans OS217 lipolytic enzyme, G-D-S-L YP_562107.1 1256952 R 318161 CDS YP_562108.1 91792457 4017380 complement(1258304..1259335) 1 NC_007954.1 hypothetical protein 1259335 4017380 Sden_1097 Shewanella denitrificans OS217 hypothetical protein YP_562108.1 1258304 R 318161 CDS YP_562109.1 91792458 4017381 complement(1259339..1260256) 1 NC_007954.1 alpha/beta hydrolase fold 1260256 4017381 Sden_1098 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562109.1 1259339 R 318161 CDS YP_562110.1 91792459 4017382 1260771..1262210 1 NC_007954.1 hypothetical protein 1262210 4017382 Sden_1099 Shewanella denitrificans OS217 hypothetical protein YP_562110.1 1260771 D 318161 CDS YP_562111.1 91792460 4017643 complement(1262288..1263211) 1 NC_007954.1 LysR, substrate-binding 1263211 4017643 Sden_1100 Shewanella denitrificans OS217 LysR, substrate-binding YP_562111.1 1262288 R 318161 CDS YP_562112.1 91792461 4017644 1263666..1264064 1 NC_007954.1 hypothetical protein 1264064 4017644 Sden_1101 Shewanella denitrificans OS217 hypothetical protein YP_562112.1 1263666 D 318161 CDS YP_562113.1 91792462 4017645 1264172..1264963 1 NC_007954.1 phenazine biosynthesis PhzC/PhzF protein 1264963 4017645 Sden_1102 Shewanella denitrificans OS217 phenazine biosynthesis PhzC/PhzF protein YP_562113.1 1264172 D 318161 CDS YP_562114.1 91792463 4017646 1264972..1265316 1 NC_007954.1 hypothetical protein 1265316 4017646 Sden_1103 Shewanella denitrificans OS217 hypothetical protein YP_562114.1 1264972 D 318161 CDS YP_562115.1 91792464 4017647 complement(1265400..1266650) 1 NC_007954.1 cytochrome c, class I 1266650 4017647 Sden_1104 Shewanella denitrificans OS217 cytochrome c, class I YP_562115.1 1265400 R 318161 CDS YP_562116.1 91792465 4017648 complement(1266647..1267183) 1 NC_007954.1 (2Fe-2S)-binding 1267183 4017648 Sden_1105 Shewanella denitrificans OS217 (2Fe-2S)-binding YP_562116.1 1266647 R 318161 CDS YP_562117.1 91792466 4017649 complement(1267180..1270053) 1 NC_007954.1 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1270053 4017649 Sden_1106 Shewanella denitrificans OS217 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_562117.1 1267180 R 318161 CDS YP_562118.1 91792467 4017650 1270505..1270993 1 NC_007954.1 GCN5-related N-acetyltransferase 1270993 4017650 Sden_1107 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562118.1 1270505 D 318161 CDS YP_562119.1 91792468 4017651 1271112..1271810 1 NC_007954.1 alpha/beta hydrolase fold 1271810 4017651 Sden_1108 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562119.1 1271112 D 318161 CDS YP_562120.1 91792469 4017652 1272108..1273316 1 NC_007954.1 sodium/hydrogen exchanger 1273316 4017652 Sden_1109 Shewanella denitrificans OS217 sodium/hydrogen exchanger YP_562120.1 1272108 D 318161 CDS YP_562121.1 91792470 4017653 1273504..1274016 1 NC_007954.1 cupin 2, barrel 1274016 4017653 Sden_1110 Shewanella denitrificans OS217 cupin 2, barrel YP_562121.1 1273504 D 318161 CDS YP_562122.1 91792471 4017654 1274391..1275464 1 NC_007954.1 hypothetical protein 1275464 4017654 Sden_1111 Shewanella denitrificans OS217 hypothetical protein YP_562122.1 1274391 D 318161 CDS YP_562123.1 91792472 4017655 1275806..1276708 1 NC_007954.1 hypothetical protein 1276708 4017655 Sden_1112 Shewanella denitrificans OS217 hypothetical protein YP_562123.1 1275806 D 318161 CDS YP_562124.1 91792473 4017656 1276873..1277625 1 NC_007954.1 hypothetical protein 1277625 4017656 Sden_1113 Shewanella denitrificans OS217 hypothetical protein YP_562124.1 1276873 D 318161 CDS YP_562125.1 91792474 4017657 1278498..1279679 1 NC_007954.1 metal-binding protein 1279679 4017657 Sden_1114 Shewanella denitrificans OS217 metal-binding protein YP_562125.1 1278498 D 318161 CDS YP_562126.1 91792475 4017658 complement(1280183..1283908) 1 NC_007954.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 1283908 metH 4017658 metH Shewanella denitrificans OS217 B12-dependent methionine synthase YP_562126.1 1280183 R 318161 CDS YP_562127.1 91792476 4017659 1284405..1285328 1 NC_007954.1 ABC transporter related 1285328 4017659 Sden_1116 Shewanella denitrificans OS217 ABC transporter related YP_562127.1 1284405 D 318161 CDS YP_562128.1 91792477 4017660 1285325..1286374 1 NC_007954.1 transport system permease protein 1286374 4017660 Sden_1117 Shewanella denitrificans OS217 transport system permease protein YP_562128.1 1285325 D 318161 CDS YP_562129.1 91792478 4017661 1286601..1287389 1 NC_007954.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1287389 cobS 4017661 cobS Shewanella denitrificans OS217 cobalamin synthase YP_562129.1 1286601 D 318161 CDS YP_562130.1 91792479 4017662 1287488..1288231 1 NC_007954.1 cob(I)alamin adenosyltransferase 1288231 4017662 Sden_1119 Shewanella denitrificans OS217 cob(I)alamin adenosyltransferase YP_562130.1 1287488 D 318161 CDS YP_562131.1 91792480 4017402 1288370..1289215 1 NC_007954.1 hypothetical protein 1289215 4017402 Sden_1120 Shewanella denitrificans OS217 hypothetical protein YP_562131.1 1288370 D 318161 CDS YP_562132.1 91792481 4017403 1289460..1289762 1 NC_007954.1 hypothetical protein 1289762 4017403 Sden_1121 Shewanella denitrificans OS217 hypothetical protein YP_562132.1 1289460 D 318161 CDS YP_562133.1 91792482 4017404 1289822..1290790 1 NC_007954.1 beta-lactamase-like protein 1290790 4017404 Sden_1122 Shewanella denitrificans OS217 beta-lactamase-like protein YP_562133.1 1289822 D 318161 CDS YP_562134.1 91792483 4017405 1291292..1292341 1 NC_007954.1 hypothetical protein 1292341 4017405 Sden_1123 Shewanella denitrificans OS217 hypothetical protein YP_562134.1 1291292 D 318161 CDS YP_562135.1 91792484 4017406 1292348..1293406 1 NC_007954.1 hypothetical protein 1293406 4017406 Sden_1124 Shewanella denitrificans OS217 hypothetical protein YP_562135.1 1292348 D 318161 CDS YP_562136.1 91792485 4017407 1293640..1294059 1 NC_007954.1 hypothetical protein 1294059 4017407 Sden_1125 Shewanella denitrificans OS217 hypothetical protein YP_562136.1 1293640 D 318161 CDS YP_562137.1 91792486 4017409 1294479..1295351 1 NC_007954.1 transposase, IS4 1295351 4017409 Sden_1127 Shewanella denitrificans OS217 transposase, IS4 YP_562137.1 1294479 D 318161 CDS YP_562138.1 91792487 4017410 1295384..1295602 1 NC_007954.1 transposase 1295602 4017410 Sden_1128 Shewanella denitrificans OS217 transposase YP_562138.1 1295384 D 318161 CDS YP_562139.1 91792488 4017411 1295950..1297956 1 NC_007954.1 hypothetical protein 1297956 4017411 Sden_1129 Shewanella denitrificans OS217 hypothetical protein YP_562139.1 1295950 D 318161 CDS YP_562140.1 91792489 4017412 1298217..1298867 1 NC_007954.1 NADH dehydrogenase 1298867 4017412 Sden_1130 Shewanella denitrificans OS217 NADH dehydrogenase YP_562140.1 1298217 D 318161 CDS YP_562141.1 91792490 4017413 complement(1299208..1300167) 1 NC_007954.1 integron integrase 1300167 4017413 Sden_1131 Shewanella denitrificans OS217 integron integrase YP_562141.1 1299208 R 318161 CDS YP_562142.1 91792491 4017414 1300864..1301358 1 NC_007954.1 transcription activator, effector binding 1301358 4017414 Sden_1132 Shewanella denitrificans OS217 transcription activator, effector binding YP_562142.1 1300864 D 318161 CDS YP_562143.1 91792492 4017415 1301742..1302317 1 NC_007954.1 Sel1 1302317 4017415 Sden_1133 Shewanella denitrificans OS217 Sel1 YP_562143.1 1301742 D 318161 CDS YP_562144.1 91792493 4017416 complement(1303352..1304323) 1 NC_007954.1 transposase IS116/IS110/IS902 1304323 4017416 Sden_1134 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_562144.1 1303352 R 318161 CDS YP_562145.1 91792494 4017417 1304644..1305207 1 NC_007954.1 hypothetical protein 1305207 4017417 Sden_1135 Shewanella denitrificans OS217 hypothetical protein YP_562145.1 1304644 D 318161 CDS YP_562146.1 91792495 4017418 complement(1305486..1306574) 1 NC_007954.1 transposase 1306574 4017418 Sden_1136 Shewanella denitrificans OS217 transposase YP_562146.1 1305486 R 318161 CDS YP_562147.1 91792496 4017419 complement(1306571..1307461) 1 NC_007954.1 phage integrase 1307461 4017419 Sden_1137 Shewanella denitrificans OS217 phage integrase YP_562147.1 1306571 R 318161 CDS YP_562148.1 91792497 4017312 1309903..1310214 1 NC_007954.1 glycine betaine/choline/proline transport system permease protein 1310214 4017312 Sden_1139 Shewanella denitrificans OS217 glycine betaine/choline/proline transport system permease protein YP_562148.1 1309903 D 318161 CDS YP_562149.1 91792498 4017313 1310211..1311062 1 NC_007954.1 integrase catalytic subunit 1311062 4017313 Sden_1140 Shewanella denitrificans OS217 integrase catalytic subunit YP_562149.1 1310211 D 318161 CDS YP_562150.1 91792499 4017314 complement(1311455..1313122) 1 NC_007954.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1313122 4017314 Sden_1141 Shewanella denitrificans OS217 ABC transporter ATP-binding protein YP_562150.1 1311455 R 318161 CDS YP_562151.1 91792500 4017315 1313312..1314565 1 NC_007954.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1314565 glyA 4017315 glyA Shewanella denitrificans OS217 serine hydroxymethyltransferase YP_562151.1 1313312 D 318161 CDS YP_562152.1 91792501 4017316 1314679..1315128 1 NC_007954.1 transcriptional regulator NrdR 1315128 nrdR 4017316 nrdR Shewanella denitrificans OS217 transcriptional regulator NrdR YP_562152.1 1314679 D 318161 CDS YP_562153.1 91792502 4017317 1315261..1316397 1 NC_007954.1 riboflavin biosynthesis protein RibD 1316397 4017317 Sden_1144 Shewanella denitrificans OS217 riboflavin biosynthesis protein RibD YP_562153.1 1315261 D 318161 CDS YP_562154.1 91792503 4017318 1316500..1317153 1 NC_007954.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1317153 4017318 Sden_1145 Shewanella denitrificans OS217 riboflavin synthase subunit alpha YP_562154.1 1316500 D 318161 CDS YP_562155.1 91792504 4017319 1317229..1318332 1 NC_007954.1 3,4-dihydroxy-2-butanone 4-phosphate synthase 1318332 4017319 Sden_1146 Shewanella denitrificans OS217 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_562155.1 1317229 D 318161 CDS YP_562156.1 91792505 4017320 1318454..1318933 1 NC_007954.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1318933 ribH 4017320 ribH Shewanella denitrificans OS217 6,7-dimethyl-8-ribityllumazine synthase YP_562156.1 1318454 D 318161 CDS YP_562157.1 91792506 4017321 1318945..1319346 1 NC_007954.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1319346 nusB 4017321 nusB Shewanella denitrificans OS217 transcription antitermination protein NusB YP_562157.1 1318945 D 318161 CDS YP_562158.1 91792507 4017322 1319444..1320400 1 NC_007954.1 thiamine-monophosphate kinase 1320400 4017322 Sden_1149 Shewanella denitrificans OS217 thiamine-monophosphate kinase YP_562158.1 1319444 D 318161 CDS YP_562159.1 91792508 4017323 1320400..1320894 1 NC_007954.1 phosphatidylglycerophosphatase 1320894 4017323 Sden_1150 Shewanella denitrificans OS217 phosphatidylglycerophosphatase YP_562159.1 1320400 D 318161 CDS YP_562160.1 91792509 4017324 complement(1321017..1322681) 1 NC_007954.1 recombination and repair protein 1322681 4017324 Sden_1151 Shewanella denitrificans OS217 recombination and repair protein YP_562160.1 1321017 R 318161 CDS YP_562161.1 91792510 4017325 1323024..1323383 1 NC_007954.1 hypothetical protein 1323383 4017325 Sden_1152 Shewanella denitrificans OS217 hypothetical protein YP_562161.1 1323024 D 318161 CDS YP_562162.1 91792511 4017326 1323527..1323982 1 NC_007954.1 GCN5-related N-acetyltransferase 1323982 4017326 Sden_1153 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562162.1 1323527 D 318161 CDS YP_562163.1 91792512 4017327 1324062..1324667 1 NC_007954.1 hypothetical protein 1324667 4017327 Sden_1154 Shewanella denitrificans OS217 hypothetical protein YP_562163.1 1324062 D 318161 CDS YP_562164.1 91792513 4017328 complement(1324799..1326775) 1 NC_007954.1 radical SAM family protein 1326775 4017328 Sden_1155 Shewanella denitrificans OS217 radical SAM family protein YP_562164.1 1324799 R 318161 CDS YP_562165.1 91792514 4017329 complement(1326804..1327493) 1 NC_007954.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 1327493 mtgA 4017329 mtgA Shewanella denitrificans OS217 monofunctional biosynthetic peptidoglycan transglycosylase YP_562165.1 1326804 R 318161 CDS YP_562166.1 91792515 4017330 1327855..1328733 1 NC_007954.1 hypothetical protein 1328733 4017330 Sden_1157 Shewanella denitrificans OS217 hypothetical protein YP_562166.1 1327855 D 318161 CDS YP_562167.1 91792516 4017331 1329582..1332611 1 NC_007954.1 cation/multidrug efflux pump-like protein 1332611 4017331 Sden_1158 Shewanella denitrificans OS217 cation/multidrug efflux pump-like protein YP_562167.1 1329582 D 318161 CDS YP_562168.1 91792517 4017683 1332611..1333375 1 NC_007954.1 hypothetical protein 1333375 4017683 Sden_1159 Shewanella denitrificans OS217 hypothetical protein YP_562168.1 1332611 D 318161 CDS YP_562169.1 91792518 4017684 1334158..1335318 1 NC_007954.1 hypothetical protein 1335318 4017684 Sden_1160 Shewanella denitrificans OS217 hypothetical protein YP_562169.1 1334158 D 318161 CDS YP_562170.1 91792519 4017685 1335400..1337037 1 NC_007954.1 phosphoenolpyruvate phosphomutase 1337037 4017685 Sden_1161 Shewanella denitrificans OS217 phosphoenolpyruvate phosphomutase YP_562170.1 1335400 D 318161 CDS YP_562171.1 91792520 4017686 1337058..1338170 1 NC_007954.1 thiamine pyrophosphate enzyme-like TPP-binding 1338170 4017686 Sden_1162 Shewanella denitrificans OS217 thiamine pyrophosphate enzyme-like TPP-binding YP_562171.1 1337058 D 318161 CDS YP_562172.1 91792521 4017687 1338179..1340407 1 NC_007954.1 hypothetical protein 1340407 4017687 Sden_1163 Shewanella denitrificans OS217 hypothetical protein YP_562172.1 1338179 D 318161 CDS YP_562173.1 91792522 4017688 1340391..1341275 1 NC_007954.1 sugar nucleotidyltransferases-like protein 1341275 4017688 Sden_1164 Shewanella denitrificans OS217 sugar nucleotidyltransferases-like protein YP_562173.1 1340391 D 318161 CDS YP_562174.1 91792523 4017689 1341272..1342363 1 NC_007954.1 aminotransferase, class V 1342363 4017689 Sden_1165 Shewanella denitrificans OS217 aminotransferase, class V YP_562174.1 1341272 D 318161 CDS YP_562175.1 91792524 4017690 1342364..1343203 1 NC_007954.1 aspartate/glutamate/uridylate kinase 1343203 4017690 Sden_1166 Shewanella denitrificans OS217 aspartate/glutamate/uridylate kinase YP_562175.1 1342364 D 318161 CDS YP_562176.1 91792525 4017691 1343197..1343850 1 NC_007954.1 thymidylate kinase-like protein 1343850 4017691 Sden_1167 Shewanella denitrificans OS217 thymidylate kinase-like protein YP_562176.1 1343197 D 318161 CDS YP_562177.1 91792526 4017692 1343878..1345578 1 NC_007954.1 radical SAM family protein 1345578 4017692 Sden_1168 Shewanella denitrificans OS217 radical SAM family protein YP_562177.1 1343878 D 318161 CDS YP_562178.1 91792527 4017693 1345630..1346403 1 NC_007954.1 hypothetical protein 1346403 4017693 Sden_1169 Shewanella denitrificans OS217 hypothetical protein YP_562178.1 1345630 D 318161 CDS YP_562179.1 91792528 4017694 1346512..1347093 1 NC_007954.1 pyridoxamine-phosphate oxidase 1347093 4017694 Sden_1170 Shewanella denitrificans OS217 pyridoxamine-phosphate oxidase YP_562179.1 1346512 D 318161 CDS YP_562180.1 91792529 4017695 1347138..1348505 1 NC_007954.1 beta-lactamase 1348505 4017695 Sden_1171 Shewanella denitrificans OS217 beta-lactamase YP_562180.1 1347138 D 318161 CDS YP_562181.1 91792530 4017696 1348575..1349699 1 NC_007954.1 transposase, IS4 1349699 4017696 Sden_1172 Shewanella denitrificans OS217 transposase, IS4 YP_562181.1 1348575 D 318161 CDS YP_562182.1 91792531 4017697 complement(1350163..1351539) 1 NC_007954.1 sulfatase 1351539 4017697 Sden_1173 Shewanella denitrificans OS217 sulfatase YP_562182.1 1350163 R 318161 CDS YP_562183.1 91792532 4017698 complement(1351545..1351940) 1 NC_007954.1 acetyltransferase 1351940 4017698 Sden_1174 Shewanella denitrificans OS217 acetyltransferase YP_562183.1 1351545 R 318161 CDS YP_562184.1 91792533 4017699 complement(1351943..1352329) 1 NC_007954.1 hypothetical protein 1352329 4017699 Sden_1175 Shewanella denitrificans OS217 hypothetical protein YP_562184.1 1351943 R 318161 CDS YP_562185.1 91792534 4017700 1353044..1357909 1 NC_007954.1 amino acid adenylation 1357909 4017700 Sden_1176 Shewanella denitrificans OS217 amino acid adenylation YP_562185.1 1353044 D 318161 CDS YP_562186.1 91792535 4017701 1357906..1367319 1 NC_007954.1 amino acid adenylation 1367319 4017701 Sden_1177 Shewanella denitrificans OS217 amino acid adenylation YP_562186.1 1357906 D 318161 CDS YP_562187.1 91792536 4017663 1367737..1368765 1 NC_007954.1 hypothetical protein 1368765 4017663 Sden_1178 Shewanella denitrificans OS217 hypothetical protein YP_562187.1 1367737 D 318161 CDS YP_562188.1 91792537 4017664 1368798..1368992 1 NC_007954.1 ISSod2, transposase OrfA 1368992 4017664 Sden_1179 Shewanella denitrificans OS217 ISSod2, transposase OrfA YP_562188.1 1368798 D 318161 CDS YP_562189.1 91792538 4017665 1369113..1370225 1 NC_007954.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1370225 4017665 Sden_1180 Shewanella denitrificans OS217 gamma-glutamyl kinase YP_562189.1 1369113 D 318161 CDS YP_562190.1 91792539 4017666 complement(1370416..1370757) 1 NC_007954.1 hypothetical protein 1370757 4017666 Sden_1181 Shewanella denitrificans OS217 hypothetical protein YP_562190.1 1370416 R 318161 CDS YP_562191.1 91792540 4017667 1371042..1372958 1 NC_007954.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1372958 dnaK 4017667 dnaK Shewanella denitrificans OS217 molecular chaperone DnaK YP_562191.1 1371042 D 318161 CDS YP_562192.1 91792541 4017668 1373084..1374217 1 NC_007954.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1374217 4017668 Sden_1183 Shewanella denitrificans OS217 chaperone protein DnaJ YP_562192.1 1373084 D 318161 CDS YP_562193.1 91792542 4017669 1374329..1375726 1 NC_007954.1 DEAD/DEAH box helicase-like protein 1375726 4017669 Sden_1184 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_562193.1 1374329 D 318161 CDS YP_562194.1 91792543 4017670 1375800..1376876 1 NC_007954.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1376876 4017670 Sden_1185 Shewanella denitrificans OS217 DNA polymerase IV YP_562194.1 1375800 D 318161 CDS YP_562195.1 91792544 4017671 1377217..1377855 1 NC_007954.1 transciptional regulator 1377855 4017671 Sden_1186 Shewanella denitrificans OS217 transciptional regulator YP_562195.1 1377217 D 318161 CDS YP_562196.1 91792545 4017672 complement(1377983..1379329) 1 NC_007954.1 twin-arginine translocation pathway signal 1379329 4017672 Sden_1187 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_562196.1 1377983 R 318161 CDS YP_562197.1 91792546 4017673 complement(1379362..1381299) 1 NC_007954.1 hypothetical protein 1381299 4017673 Sden_1188 Shewanella denitrificans OS217 hypothetical protein YP_562197.1 1379362 R 318161 CDS YP_562198.1 91792547 4017674 complement(1381604..1382602) 1 NC_007954.1 auxin efflux carrier 1382602 4017674 Sden_1189 Shewanella denitrificans OS217 auxin efflux carrier YP_562198.1 1381604 R 318161 CDS YP_562199.1 91792548 4017675 complement(1382702..1383298) 1 NC_007954.1 hypothetical protein 1383298 4017675 Sden_1190 Shewanella denitrificans OS217 hypothetical protein YP_562199.1 1382702 R 318161 CDS YP_562200.2 162210777 4017676 complement(1383288..1386140) 1 NC_007954.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1386140 4017676 Sden_1191 Shewanella denitrificans OS217 hybrid sensory histidine kinase BarA YP_562200.2 1383288 R 318161 CDS YP_562201.1 91792550 4017677 1386242..1387648 1 NC_007954.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1387648 rumA 4017677 rumA Shewanella denitrificans OS217 23S rRNA 5-methyluridine methyltransferase YP_562201.1 1386242 D 318161 CDS YP_562202.1 91792551 4017678 1387859..1390066 1 NC_007954.1 RelA/SpoT family protein 1390066 4017678 Sden_1193 Shewanella denitrificans OS217 RelA/SpoT family protein YP_562202.1 1387859 D 318161 CDS YP_562203.1 91792552 4017679 1390092..1391009 1 NC_007954.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1391009 mazG 4017679 mazG Shewanella denitrificans OS217 nucleoside triphosphate pyrophosphohydrolase YP_562203.1 1390092 D 318161 CDS YP_562204.1 91792553 4017680 1391127..1392764 1 NC_007954.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1392764 pyrG 4017680 pyrG Shewanella denitrificans OS217 CTP synthetase YP_562204.1 1391127 D 318161 CDS YP_562205.1 91792554 4017681 1393022..1394317 1 NC_007954.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1394317 eno 4017681 eno Shewanella denitrificans OS217 phosphopyruvate hydratase YP_562205.1 1393022 D 318161 CDS YP_562206.1 91792555 4017682 1394491..1394715 1 NC_007954.1 septum formation initiator 1394715 4017682 Sden_1197 Shewanella denitrificans OS217 septum formation initiator YP_562206.1 1394491 D 318161 CDS YP_562207.1 91792556 4017721 1394750..1395475 1 NC_007954.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1395475 ispD 4017721 ispD Shewanella denitrificans OS217 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_562207.1 1394750 D 318161 CDS YP_562208.1 91792557 4017722 1395672..1396154 1 NC_007954.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1396154 ispF 4017722 ispF Shewanella denitrificans OS217 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_562208.1 1395672 D 318161 CDS YP_562209.1 91792558 4017723 1396169..1397257 1 NC_007954.1 pseudouridylate synthase 1397257 4017723 Sden_1200 Shewanella denitrificans OS217 pseudouridylate synthase YP_562209.1 1396169 D 318161 CDS YP_562210.1 91792559 4017724 1397259..1398008 1 NC_007954.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1398008 surE 4017724 surE Shewanella denitrificans OS217 stationary phase survival protein SurE YP_562210.1 1397259 D 318161 CDS YP_562211.1 91792560 4017725 1398005..1398640 1 NC_007954.1 protein-L-isoaspartate O-methyltransferase 1398640 4017725 Sden_1202 Shewanella denitrificans OS217 protein-L-isoaspartate O-methyltransferase YP_562211.1 1398005 D 318161 CDS YP_562212.1 91792561 4017726 1398784..1399719 1 NC_007954.1 peptidase M23B 1399719 4017726 Sden_1203 Shewanella denitrificans OS217 peptidase M23B YP_562212.1 1398784 D 318161 CDS YP_562213.1 91792562 4017727 1399796..1400779 1 NC_007954.1 RNA polymerase sigma factor RpoS 1400779 4017727 Sden_1204 Shewanella denitrificans OS217 RNA polymerase sigma factor RpoS YP_562213.1 1399796 D 318161 CDS YP_562214.1 91792563 4017728 1401078..1401965 1 NC_007954.1 transposase, IS4 1401965 4017728 Sden_1205 Shewanella denitrificans OS217 transposase, IS4 YP_562214.1 1401078 D 318161 CDS YP_562215.1 91792564 4017729 complement(1403088..1403435) 1 NC_007954.1 hypothetical protein 1403435 4017729 Sden_1206 Shewanella denitrificans OS217 hypothetical protein YP_562215.1 1403088 R 318161 CDS YP_562216.1 91792565 4017730 complement(1403468..1406056) 1 NC_007954.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1406056 4017730 Sden_1207 Shewanella denitrificans OS217 DNA mismatch repair protein MutS YP_562216.1 1403468 R 318161 CDS YP_562217.1 91792566 4017731 1406529..1407590 1 NC_007954.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1407590 recA 4017731 recA Shewanella denitrificans OS217 recombinase A YP_562217.1 1406529 D 318161 CDS YP_562218.1 91792567 4017732 complement(1407714..1408436) 1 NC_007954.1 LytTr DNA-binding region 1408436 4017732 Sden_1209 Shewanella denitrificans OS217 LytTr DNA-binding region YP_562218.1 1407714 R 318161 CDS YP_562219.1 91792568 4017733 complement(1408500..1409555) 1 NC_007954.1 histidine kinase internal region 1409555 4017733 Sden_1210 Shewanella denitrificans OS217 histidine kinase internal region YP_562219.1 1408500 R 318161 CDS YP_562220.1 91792569 4017734 complement(1409539..1410261) 1 NC_007954.1 hypothetical protein 1410261 4017734 Sden_1211 Shewanella denitrificans OS217 hypothetical protein YP_562220.1 1409539 R 318161 CDS YP_562221.1 91792570 4017735 1410474..1411508 1 NC_007954.1 alpha/beta hydrolase fold 1411508 4017735 Sden_1212 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562221.1 1410474 D 318161 CDS YP_562222.1 91792571 4017736 1411645..1414269 1 NC_007954.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1414269 alaS 4017736 alaS Shewanella denitrificans OS217 alanyl-tRNA synthetase YP_562222.1 1411645 D 318161 CDS YP_562223.1 91792572 4017737 1414612..1414809 1 NC_007954.1 carbon storage regulator 1414809 4017737 Sden_1214 Shewanella denitrificans OS217 carbon storage regulator YP_562223.1 1414612 D 318161 CDS YP_562224.1 91792573 4017481 1416231..1417703 1 NC_007954.1 hypothetical protein 1417703 4017481 Sden_1215 Shewanella denitrificans OS217 hypothetical protein YP_562224.1 1416231 D 318161 CDS YP_562225.1 91792574 4017482 complement(1417796..1419121) 1 NC_007954.1 sodium:dicarboxylate symporter 1419121 4017482 Sden_1216 Shewanella denitrificans OS217 sodium:dicarboxylate symporter YP_562225.1 1417796 R 318161 CDS YP_562226.1 91792575 4017483 1419305..1419739 1 NC_007954.1 hypothetical protein 1419739 4017483 Sden_1217 Shewanella denitrificans OS217 hypothetical protein YP_562226.1 1419305 D 318161 CDS YP_562227.1 91792576 4017484 1419812..1422736 1 NC_007954.1 peptidase M16-like protein 1422736 4017484 Sden_1218 Shewanella denitrificans OS217 peptidase M16-like protein YP_562227.1 1419812 D 318161 CDS YP_562228.1 91792577 4017485 1422934..1424508 1 NC_007954.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1424508 4017485 Sden_1219 Shewanella denitrificans OS217 glutamate--cysteine ligase YP_562228.1 1422934 D 318161 CDS YP_562229.1 91792578 4017486 1424517..1424963 1 NC_007954.1 hypothetical protein 1424963 4017486 Sden_1220 Shewanella denitrificans OS217 hypothetical protein YP_562229.1 1424517 D 318161 CDS YP_562230.1 91792579 4017487 1425110..1425796 1 NC_007954.1 hypothetical protein 1425796 4017487 Sden_1221 Shewanella denitrificans OS217 hypothetical protein YP_562230.1 1425110 D 318161 CDS YP_562231.1 91792580 4017488 complement(1425869..1427101) 1 NC_007954.1 GGDEF domain-containing protein 1427101 4017488 Sden_1222 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562231.1 1425869 R 318161 CDS YP_562232.1 91792581 4017489 complement(1427258..1428289) 1 NC_007954.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1428289 4017489 Sden_1223 Shewanella denitrificans OS217 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_562232.1 1427258 R 318161 CDS YP_562233.1 91792582 4017273 complement(1428343..1428834) 1 NC_007954.1 phosphoribosylaminoimidazole carboxylase, catalytic subunit 1428834 4017273 Sden_1224 Shewanella denitrificans OS217 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_562233.1 1428343 R 318161 CDS YP_562234.1 91792583 4017274 complement(1429177..1429614) 1 NC_007954.1 OsmC-like protein 1429614 4017274 Sden_1225 Shewanella denitrificans OS217 OsmC-like protein YP_562234.1 1429177 R 318161 CDS YP_562235.1 91792584 4017275 1430304..1430660 1 NC_007954.1 ribosomal subunit interface protein 1430660 4017275 Sden_1226 Shewanella denitrificans OS217 ribosomal subunit interface protein YP_562235.1 1430304 D 318161 CDS YP_562236.1 91792585 4017276 complement(1430810..1431532) 1 NC_007954.1 hypothetical protein 1431532 4017276 Sden_1227 Shewanella denitrificans OS217 hypothetical protein YP_562236.1 1430810 R 318161 CDS YP_562237.1 91792586 4017277 1431897..1432154 1 NC_007954.1 hypothetical protein 1432154 4017277 Sden_1228 Shewanella denitrificans OS217 hypothetical protein YP_562237.1 1431897 D 318161 CDS YP_562238.1 91792587 4017278 complement(1432247..1432954) 1 NC_007954.1 regulatory protein, TetR 1432954 4017278 Sden_1229 Shewanella denitrificans OS217 regulatory protein, TetR YP_562238.1 1432247 R 318161 CDS YP_562239.1 91792588 4017279 1432953..1433996 1 NC_007954.1 NADH:flavin oxidoreductase/NADH oxidase 1433996 4017279 Sden_1230 Shewanella denitrificans OS217 NADH:flavin oxidoreductase/NADH oxidase YP_562239.1 1432953 D 318161 CDS YP_562240.1 91792589 4017280 1434327..1435334 1 NC_007954.1 diacylglycerol kinase, catalytic region 1435334 4017280 Sden_1231 Shewanella denitrificans OS217 diacylglycerol kinase, catalytic region YP_562240.1 1434327 D 318161 CDS YP_562241.1 91792590 4017281 1435459..1435650 1 NC_007954.1 hypothetical protein 1435650 4017281 Sden_1232 Shewanella denitrificans OS217 hypothetical protein YP_562241.1 1435459 D 318161 CDS YP_562242.1 91792591 4017282 1435868..1436212 1 NC_007954.1 alkylphosphonate utilization operon protein PhnA 1436212 4017282 Sden_1233 Shewanella denitrificans OS217 alkylphosphonate utilization operon protein PhnA YP_562242.1 1435868 D 318161 CDS YP_562243.1 91792592 4017283 1436850..1439339 1 NC_007954.1 type III restriction enzyme, res subunit 1439339 4017283 Sden_1234 Shewanella denitrificans OS217 type III restriction enzyme, res subunit YP_562243.1 1436850 D 318161 CDS YP_562244.1 91792593 4017284 1439454..1440959 1 NC_007954.1 N-6 DNA methylase 1440959 4017284 Sden_1235 Shewanella denitrificans OS217 N-6 DNA methylase YP_562244.1 1439454 D 318161 CDS YP_562245.1 91792594 4017285 1440952..1442046 1 NC_007954.1 hypothetical protein 1442046 4017285 Sden_1236 Shewanella denitrificans OS217 hypothetical protein YP_562245.1 1440952 D 318161 CDS YP_562246.1 91792595 4017286 1442046..1443947 1 NC_007954.1 restriction modification system DNA specificity subunit 1443947 4017286 Sden_1237 Shewanella denitrificans OS217 restriction modification system DNA specificity subunit YP_562246.1 1442046 D 318161 CDS YP_562247.1 91792596 4017287 1444021..1447557 1 NC_007954.1 phospholipase D/transphosphatidylase 1447557 4017287 Sden_1238 Shewanella denitrificans OS217 phospholipase D/transphosphatidylase YP_562247.1 1444021 D 318161 CDS YP_562248.1 91792597 4017289 complement(1448208..1448768) 1 NC_007954.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1448768 smpB 4017289 smpB Shewanella denitrificans OS217 SsrA-binding protein YP_562248.1 1448208 R 318161 CDS YP_562249.1 91792598 4017290 1449010..1449447 1 NC_007954.1 cyclase/dehydrase 1449447 4017290 Sden_1240 Shewanella denitrificans OS217 cyclase/dehydrase YP_562249.1 1449010 D 318161 CDS YP_562250.1 91792599 4017291 1449437..1449772 1 NC_007954.1 hypothetical protein 1449772 4017291 Sden_1241 Shewanella denitrificans OS217 hypothetical protein YP_562250.1 1449437 D 318161 CDS YP_562251.1 91792600 4017457 complement(1449910..1450404) 1 NC_007954.1 SmpA/OmlA 1450404 4017457 Sden_1242 Shewanella denitrificans OS217 SmpA/OmlA YP_562251.1 1449910 R 318161 CDS YP_562252.1 91792601 4017458 1450776..1451627 1 NC_007954.1 uroporphyrin-III C/tetrapyrrole methyltransferase 1451627 4017458 Sden_1243 Shewanella denitrificans OS217 uroporphyrin-III C/tetrapyrrole methyltransferase YP_562252.1 1450776 D 318161 CDS YP_562253.1 91792602 4017459 1451901..1453637 1 NC_007954.1 GGDEF domain-containing protein 1453637 4017459 Sden_1244 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562253.1 1451901 D 318161 CDS YP_562254.1 91792603 4017460 1454531..1456198 1 NC_007954.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1456198 4017460 Sden_1245 Shewanella denitrificans OS217 malate synthase YP_562254.1 1454531 D 318161 CDS YP_562255.1 91792604 4017461 1456275..1457600 1 NC_007954.1 isocitrate lyase 1457600 4017461 Sden_1246 Shewanella denitrificans OS217 isocitrate lyase YP_562255.1 1456275 D 318161 CDS YP_562256.1 91792605 4017462 1457862..1459331 1 NC_007954.1 hypothetical protein 1459331 4017462 Sden_1247 Shewanella denitrificans OS217 hypothetical protein YP_562256.1 1457862 D 318161 CDS YP_562257.1 91792606 4017463 complement(1459396..1459992) 1 NC_007954.1 hypothetical protein 1459992 4017463 Sden_1248 Shewanella denitrificans OS217 hypothetical protein YP_562257.1 1459396 R 318161 CDS YP_562258.1 91792607 4017464 complement(1460070..1460894) 1 NC_007954.1 hypothetical protein 1460894 4017464 Sden_1249 Shewanella denitrificans OS217 hypothetical protein YP_562258.1 1460070 R 318161 CDS YP_562259.1 91792608 4017465 1460929..1461183 1 NC_007954.1 hypothetical protein 1461183 4017465 Sden_1250 Shewanella denitrificans OS217 hypothetical protein YP_562259.1 1460929 D 318161 CDS YP_562260.1 91792609 4017466 complement(1461228..1461785) 1 NC_007954.1 GCN5-related N-acetyltransferase 1461785 4017466 Sden_1251 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562260.1 1461228 R 318161 CDS YP_562261.1 91792610 4017467 complement(1461790..1463532) 1 NC_007954.1 5'-nucleotidase-like protein 1463532 4017467 Sden_1252 Shewanella denitrificans OS217 5'-nucleotidase-like protein YP_562261.1 1461790 R 318161 CDS YP_562262.1 91792611 4017468 1463729..1464850 1 NC_007954.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1464850 4017468 Sden_1253 Shewanella denitrificans OS217 ribosomal RNA large subunit methyltransferase N YP_562262.1 1463729 D 318161 CDS YP_562263.1 91792612 4017469 1464886..1465668 1 NC_007954.1 tetratricopeptide TPR_2 1465668 4017469 Sden_1254 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_562263.1 1464886 D 318161 CDS YP_562264.1 91792613 4017470 1465668..1466762 1 NC_007954.1 hypothetical protein 1466762 4017470 Sden_1255 Shewanella denitrificans OS217 hypothetical protein YP_562264.1 1465668 D 318161 CDS YP_562265.1 91792614 4017471 1466827..1467942 1 NC_007954.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1467942 ispG 4017471 ispG Shewanella denitrificans OS217 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_562265.1 1466827 D 318161 CDS YP_562266.1 91792615 4017472 1468022..1469296 1 NC_007954.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1469296 hisS 4017472 hisS Shewanella denitrificans OS217 histidyl-tRNA synthetase YP_562266.1 1468022 D 318161 CDS YP_562267.1 91792616 4017473 1469310..1469930 1 NC_007954.1 tetratricopeptide TPR_2 1469930 4017473 Sden_1258 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_562267.1 1469310 D 318161 CDS YP_562268.1 91792617 4017474 1469941..1471128 1 NC_007954.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1471128 4017474 Sden_1259 Shewanella denitrificans OS217 outer membrane protein assembly complex subunit YfgL YP_562268.1 1469941 D 318161 CDS YP_562269.1 91792618 4017475 1471210..1472685 1 NC_007954.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1472685 engA 4017475 engA Shewanella denitrificans OS217 GTP-binding protein EngA YP_562269.1 1471210 D 318161 CDS YP_562270.1 91792619 4017529 1472798..1473013 1 NC_007954.1 hypothetical protein 1473013 4017529 Sden_1261 Shewanella denitrificans OS217 hypothetical protein YP_562270.1 1472798 D 318161 CDS YP_562271.1 91792620 4017530 complement(1473072..1474532) 1 NC_007954.1 hypothetical protein 1474532 4017530 Sden_1262 Shewanella denitrificans OS217 hypothetical protein YP_562271.1 1473072 R 318161 CDS YP_562272.1 91792621 4017531 complement(1474620..1476044) 1 NC_007954.1 ATP-binding region, ATPase-like protein 1476044 4017531 Sden_1263 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562272.1 1474620 R 318161 CDS YP_562273.1 91792622 4017532 complement(1476034..1476765) 1 NC_007954.1 response regulator receiver 1476765 4017532 Sden_1264 Shewanella denitrificans OS217 response regulator receiver YP_562273.1 1476034 R 318161 CDS YP_562274.1 91792623 4017533 complement(1476903..1477244) 1 NC_007954.1 peptidase 1477244 4017533 Sden_1265 Shewanella denitrificans OS217 peptidase YP_562274.1 1476903 R 318161 CDS YP_562275.1 91792624 4017534 1477553..1478704 1 NC_007954.1 hypothetical protein 1478704 4017534 Sden_1266 Shewanella denitrificans OS217 hypothetical protein YP_562275.1 1477553 D 318161 CDS YP_562276.1 91792625 4017535 1478897..1479568 1 NC_007954.1 OmpA/MotB 1479568 4017535 Sden_1267 Shewanella denitrificans OS217 OmpA/MotB YP_562276.1 1478897 D 318161 CDS YP_562277.1 91792626 4017536 complement(1479711..1481051) 1 NC_007954.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1481051 xseA 4017536 xseA Shewanella denitrificans OS217 exodeoxyribonuclease VII large subunit YP_562277.1 1479711 R 318161 CDS YP_562278.1 91792627 4017537 1481172..1482638 1 NC_007954.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1482638 4017537 Sden_1269 Shewanella denitrificans OS217 inosine 5'-monophosphate dehydrogenase YP_562278.1 1481172 D 318161 CDS YP_562279.1 91792628 4017538 1482739..1484316 1 NC_007954.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1484316 guaA 4017538 guaA Shewanella denitrificans OS217 GMP synthase YP_562279.1 1482739 D 318161 CDS YP_562280.1 91792629 4017539 1484445..1484978 1 NC_007954.1 CMP/dCMP deaminase, zinc-binding 1484978 4017539 Sden_1271 Shewanella denitrificans OS217 CMP/dCMP deaminase, zinc-binding YP_562280.1 1484445 D 318161 CDS YP_562281.1 91792630 4017540 complement(1485406..1486890) 1 NC_007954.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 1486890 4017540 Sden_1272 Shewanella denitrificans OS217 transglycosylase YP_562281.1 1485406 R 318161 CDS YP_562282.1 91792631 4017541 1487218..1491099 1 NC_007954.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1491099 4017541 Sden_1273 Shewanella denitrificans OS217 phosphoribosylformylglycinamidine synthase YP_562282.1 1487218 D 318161 CDS YP_562283.1 91792632 4017542 1491371..1492936 1 NC_007954.1 cytochrome bd ubiquinol oxidase, subunit I 1492936 4017542 Sden_1274 Shewanella denitrificans OS217 cytochrome bd ubiquinol oxidase, subunit I YP_562283.1 1491371 D 318161 CDS YP_562284.1 91792633 4017543 1492929..1494068 1 NC_007954.1 cytochrome d ubiquinol oxidase, subunit II 1494068 4017543 Sden_1275 Shewanella denitrificans OS217 cytochrome d ubiquinol oxidase, subunit II YP_562284.1 1492929 D 318161 CDS YP_562285.1 91792634 4017544 1494095..1494214 1 NC_007954.1 Cyd operon protein YbgT 1494214 4017544 Sden_1276 Shewanella denitrificans OS217 Cyd operon protein YbgT YP_562285.1 1494095 D 318161 CDS YP_562286.1 91792635 4017545 complement(1494291..1497362) 1 NC_007954.1 acriflavin resistance protein 1497362 4017545 Sden_1277 Shewanella denitrificans OS217 acriflavin resistance protein YP_562286.1 1494291 R 318161 CDS YP_562287.1 91792636 4017546 complement(1497359..1498471) 1 NC_007954.1 secretion protein HlyD 1498471 4017546 Sden_1278 Shewanella denitrificans OS217 secretion protein HlyD YP_562287.1 1497359 R 318161 CDS YP_562288.1 91792637 4017547 1498681..1499301 1 NC_007954.1 regulatory protein, TetR 1499301 4017547 Sden_1279 Shewanella denitrificans OS217 regulatory protein, TetR YP_562288.1 1498681 D 318161 CDS YP_562289.1 91792638 4017548 1499472..1500431 1 NC_007954.1 hypothetical protein 1500431 4017548 Sden_1280 Shewanella denitrificans OS217 hypothetical protein YP_562289.1 1499472 D 318161 CDS YP_562290.1 91792639 4017568 complement(1500482..1501069) 1 NC_007954.1 hypothetical protein 1501069 4017568 Sden_1281 Shewanella denitrificans OS217 hypothetical protein YP_562290.1 1500482 R 318161 CDS YP_562291.1 91792640 4017569 complement(1501138..1501617) 1 NC_007954.1 hypothetical protein 1501617 4017569 Sden_1282 Shewanella denitrificans OS217 hypothetical protein YP_562291.1 1501138 R 318161 CDS YP_562292.1 91792641 4017570 1501937..1502968 1 NC_007954.1 polysaccharide biosynthesis protein 1502968 4017570 Sden_1283 Shewanella denitrificans OS217 polysaccharide biosynthesis protein YP_562292.1 1501937 D 318161 CDS YP_562293.1 91792642 4017571 1502961..1503917 1 NC_007954.1 MaoC-like dehydratase 1503917 4017571 Sden_1284 Shewanella denitrificans OS217 MaoC-like dehydratase YP_562293.1 1502961 D 318161 CDS YP_562294.1 91792643 4017572 complement(1504115..1506589) 1 NC_007954.1 hypothetical protein 1506589 4017572 Sden_1285 Shewanella denitrificans OS217 hypothetical protein YP_562294.1 1504115 R 318161 CDS YP_562295.1 91792644 4017573 1507007..1508002 1 NC_007954.1 polysaccharide biosynthesis protein CapD 1508002 4017573 Sden_1286 Shewanella denitrificans OS217 polysaccharide biosynthesis protein CapD YP_562295.1 1507007 D 318161 CDS YP_562296.1 91792645 4017574 1507999..1509144 1 NC_007954.1 DegT/DnrJ/EryC1/StrS aminotransferase 1509144 4017574 Sden_1287 Shewanella denitrificans OS217 DegT/DnrJ/EryC1/StrS aminotransferase YP_562296.1 1507999 D 318161 CDS YP_562297.1 91792646 4017575 1509144..1509842 1 NC_007954.1 acylneuraminate cytidylyltransferase 1509842 4017575 Sden_1288 Shewanella denitrificans OS217 acylneuraminate cytidylyltransferase YP_562297.1 1509144 D 318161 CDS YP_562298.1 91792647 4017576 1509920..1510972 1 NC_007954.1 N-acylneuraminate-9-phosphate synthase 1510972 4017576 Sden_1289 Shewanella denitrificans OS217 N-acylneuraminate-9-phosphate synthase YP_562298.1 1509920 D 318161 CDS YP_562299.1 91792648 4017577 1510985..1512352 1 NC_007954.1 FAD dependent oxidoreductase 1512352 4017577 Sden_1290 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_562299.1 1510985 D 318161 CDS YP_562300.1 91792649 4017578 1512361..1513344 1 NC_007954.1 spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein 1513344 4017578 Sden_1291 Shewanella denitrificans OS217 spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein YP_562300.1 1512361 D 318161 CDS YP_562301.1 91792650 4017579 1513395..1514024 1 NC_007954.1 methyltransferase type 12 1514024 4017579 Sden_1292 Shewanella denitrificans OS217 methyltransferase type 12 YP_562301.1 1513395 D 318161 CDS YP_562302.1 91792651 4017580 1514036..1514761 1 NC_007954.1 hypothetical protein 1514761 4017580 Sden_1293 Shewanella denitrificans OS217 hypothetical protein YP_562302.1 1514036 D 318161 CDS YP_562303.1 91792652 4017581 1514844..1515908 1 NC_007954.1 hypothetical protein 1515908 4017581 Sden_1294 Shewanella denitrificans OS217 hypothetical protein YP_562303.1 1514844 D 318161 CDS YP_562304.1 91792653 4017583 complement(1516646..1517860) 1 NC_007954.1 hypothetical protein 1517860 4017583 Sden_1295 Shewanella denitrificans OS217 hypothetical protein YP_562304.1 1516646 R 318161 CDS YP_562305.1 91792654 4017584 1518404..1519117 1 NC_007954.1 hypothetical protein 1519117 4017584 Sden_1296 Shewanella denitrificans OS217 hypothetical protein YP_562305.1 1518404 D 318161 CDS YP_562306.1 91792655 4017585 1519120..1519566 1 NC_007954.1 hypothetical protein 1519566 4017585 Sden_1297 Shewanella denitrificans OS217 hypothetical protein YP_562306.1 1519120 D 318161 CDS YP_562307.1 91792656 4017292 complement(1519638..1520063) 1 NC_007954.1 FlgN 1520063 4017292 Sden_1298 Shewanella denitrificans OS217 FlgN YP_562307.1 1519638 R 318161 CDS YP_562308.1 91792657 4017293 complement(1520170..1520493) 1 NC_007954.1 anti-sigma-28 factor, FlgM 1520493 4017293 Sden_1299 Shewanella denitrificans OS217 anti-sigma-28 factor, FlgM YP_562308.1 1520170 R 318161 CDS YP_562309.1 91792658 4017294 complement(1520567..1521274) 1 NC_007954.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1521274 flgA 4017294 flgA Shewanella denitrificans OS217 flagellar basal body P-ring biosynthesis protein FlgA YP_562309.1 1520567 R 318161 CDS YP_562310.1 91792659 4017295 1521629..1522549 1 NC_007954.1 CheW-like protein 1522549 4017295 Sden_1301 Shewanella denitrificans OS217 CheW-like protein YP_562310.1 1521629 D 318161 CDS YP_562311.1 91792660 4017296 1522679..1523518 1 NC_007954.1 protein-glutamate O-methyltransferase 1523518 4017296 Sden_1302 Shewanella denitrificans OS217 protein-glutamate O-methyltransferase YP_562311.1 1522679 D 318161 CDS YP_562312.1 91792661 4017297 1523674..1524072 1 NC_007954.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1524072 flgB 4017297 flgB Shewanella denitrificans OS217 flagellar basal body rod protein FlgB YP_562312.1 1523674 D 318161 CDS YP_562313.1 91792662 4017298 1524075..1524491 1 NC_007954.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1524491 flgC 4017298 flgC Shewanella denitrificans OS217 flagellar basal body rod protein FlgC YP_562313.1 1524075 D 318161 CDS YP_562314.1 91792663 4017299 1524516..1525307 1 NC_007954.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1525307 flgD 4017299 flgD Shewanella denitrificans OS217 flagellar basal body rod modification protein YP_562314.1 1524516 D 318161 CDS YP_562315.1 91792664 4017300 1525388..1526755 1 NC_007954.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1526755 flgE 4017300 flgE Shewanella denitrificans OS217 flagellar hook protein FlgE YP_562315.1 1525388 D 318161 CDS YP_562316.1 91792665 4017301 1526951..1527694 1 NC_007954.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1527694 flgF 4017301 flgF Shewanella denitrificans OS217 flagellar basal body rod protein FlgF YP_562316.1 1526951 D 318161 CDS YP_562317.1 91792666 4017302 1527706..1528494 1 NC_007954.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1528494 flgG 4017302 flgG Shewanella denitrificans OS217 flagellar basal body rod protein FlgG YP_562317.1 1527706 D 318161 CDS YP_562318.1 91792667 4017303 1528505..1529179 1 NC_007954.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1529179 flgH 4017303 flgH Shewanella denitrificans OS217 flagellar basal body L-ring protein YP_562318.1 1528505 D 318161 CDS YP_562319.1 91792668 4017304 1529191..1530291 1 NC_007954.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1530291 flgI 4017304 flgI Shewanella denitrificans OS217 flagellar basal body P-ring protein YP_562319.1 1529191 D 318161 CDS YP_562320.1 91792669 4017305 1530309..1531412 1 NC_007954.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1531412 flgJ 4017305 flgJ Shewanella denitrificans OS217 flagellar rod assembly protein/muramidase FlgJ YP_562320.1 1530309 D 318161 CDS YP_562321.1 91792670 4017306 1531412..1533331 1 NC_007954.1 flagellar hook-associated protein 1533331 4017306 Sden_1312 Shewanella denitrificans OS217 flagellar hook-associated protein YP_562321.1 1531412 D 318161 CDS YP_562322.1 91792671 4017307 1533344..1534546 1 NC_007954.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1534546 flgL 4017307 flgL Shewanella denitrificans OS217 flagellar hook-associated protein FlgL YP_562322.1 1533344 D 318161 CDS YP_562323.1 91792672 4017308 1534637..1535458 1 NC_007954.1 flagellin-like protein 1535458 4017308 Sden_1314 Shewanella denitrificans OS217 flagellin-like protein YP_562323.1 1534637 D 318161 CDS YP_562324.1 91792673 4017309 1536030..1536848 1 NC_007954.1 flagellin-like protein 1536848 4017309 Sden_1315 Shewanella denitrificans OS217 flagellin-like protein YP_562324.1 1536030 D 318161 CDS YP_562325.1 91792674 4017310 1537047..1537460 1 NC_007954.1 flagellar protein FlaG protein 1537460 4017310 Sden_1316 Shewanella denitrificans OS217 flagellar protein FlaG protein YP_562325.1 1537047 D 318161 CDS YP_562326.1 91792675 4017311 1537567..1538931 1 NC_007954.1 flagellar hook-associated 2-like protein 1538931 4017311 Sden_1317 Shewanella denitrificans OS217 flagellar hook-associated 2-like protein YP_562326.1 1537567 D 318161 CDS YP_562327.1 91792676 4017490 1538960..1539295 1 NC_007954.1 hypothetical protein 1539295 4017490 Sden_1318 Shewanella denitrificans OS217 hypothetical protein YP_562327.1 1538960 D 318161 CDS YP_562328.1 91792677 4017491 1539302..1539712 1 NC_007954.1 flagellin specific chaperone; flagellar protein FliS 1539712 fliS 4017491 fliS Shewanella denitrificans OS217 flagellar protein FliS YP_562328.1 1539302 D 318161 CDS YP_562329.1 91792678 4017492 1540104..1541537 1 NC_007954.1 sigma-54 factor, interaction region 1541537 4017492 Sden_1320 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_562329.1 1540104 D 318161 CDS YP_562330.1 91792679 4017493 1541799..1542869 1 NC_007954.1 ATP-binding region, ATPase-like protein 1542869 4017493 Sden_1321 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562330.1 1541799 D 318161 CDS YP_562331.1 91792680 4017494 1542862..1544202 1 NC_007954.1 sigma-54 factor, interaction region 1544202 4017494 Sden_1322 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_562331.1 1542862 D 318161 CDS YP_562332.1 91792681 4017495 1544489..1544830 1 NC_007954.1 flagellar hook-basal body complex protein (FliE) 1544830 4017495 Sden_1323 Shewanella denitrificans OS217 flagellar hook-basal body complex protein (FliE) YP_562332.1 1544489 D 318161 CDS YP_562333.1 91792682 4017496 1544863..1546563 1 NC_007954.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1546563 fliF 4017496 fliF Shewanella denitrificans OS217 flagellar MS-ring protein YP_562333.1 1544863 D 318161 CDS YP_562334.1 91792683 4017497 1546550..1547596 1 NC_007954.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1547596 fliG 4017497 fliG Shewanella denitrificans OS217 flagellar motor switch protein G YP_562334.1 1546550 D 318161 CDS YP_562335.1 91792684 4017498 1547661..1548788 1 NC_007954.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1548788 fliH 4017498 fliH Shewanella denitrificans OS217 flagellar assembly protein H YP_562335.1 1547661 D 318161 CDS YP_562336.1 91792685 4017499 1548757..1550097 1 NC_007954.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1550097 fliI 4017499 fliI Shewanella denitrificans OS217 flagellum-specific ATP synthase YP_562336.1 1548757 D 318161 CDS YP_562337.1 91792686 4017500 1550169..1550615 1 NC_007954.1 flagellar export FliJ 1550615 4017500 Sden_1328 Shewanella denitrificans OS217 flagellar export FliJ YP_562337.1 1550169 D 318161 CDS YP_562338.1 91792687 4017501 1550778..1552265 1 NC_007954.1 flagellar hook-length control protein 1552265 4017501 Sden_1329 Shewanella denitrificans OS217 flagellar hook-length control protein YP_562338.1 1550778 D 318161 CDS YP_562339.2 162210776 4017502 1552408..1552929 1 NC_007954.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1552929 fliL 4017502 fliL Shewanella denitrificans OS217 flagellar basal body-associated protein FliL YP_562339.2 1552408 D 318161 CDS YP_562340.1 91792689 4017503 1552973..1553545 1 NC_007954.1 flagellar motor switch protein FliM 1553545 4017503 Sden_1331 Shewanella denitrificans OS217 flagellar motor switch protein FliM YP_562340.1 1552973 D 318161 CDS YP_562341.1 91792690 4017504 1553575..1554591 1 NC_007954.1 transposase IS116/IS110/IS902 1554591 4017504 Sden_1332 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_562341.1 1553575 D 318161 CDS YP_562342.1 91792691 4017505 1554835..1555380 1 NC_007954.1 surface presentation of antigens (SPOA) protein 1555380 4017505 Sden_1333 Shewanella denitrificans OS217 surface presentation of antigens (SPOA) protein YP_562342.1 1554835 D 318161 CDS YP_562343.1 91792692 4017506 1555390..1555773 1 NC_007954.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1555773 fliN 4017506 fliN Shewanella denitrificans OS217 flagellar motor switch protein YP_562343.1 1555390 D 318161 CDS YP_562344.1 91792693 4017507 1555869..1556270 1 NC_007954.1 flagellar biosynthesis protein, FliO 1556270 4017507 Sden_1335 Shewanella denitrificans OS217 flagellar biosynthesis protein, FliO YP_562344.1 1555869 D 318161 CDS YP_562345.1 91792694 4017508 1556270..1557013 1 NC_007954.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1557013 fliP 4017508 fliP Shewanella denitrificans OS217 flagellar biosynthesis protein FliP YP_562345.1 1556270 D 318161 CDS YP_562346.1 91792695 4017623 1557025..1557294 1 NC_007954.1 flagellar biosynthetic protein FliQ 1557294 4017623 Sden_1337 Shewanella denitrificans OS217 flagellar biosynthetic protein FliQ YP_562346.1 1557025 D 318161 CDS YP_562347.1 91792696 4017624 1557298..1558101 1 NC_007954.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1558101 fliR 4017624 fliR Shewanella denitrificans OS217 flagellar biosynthesis protein FliR YP_562347.1 1557298 D 318161 CDS YP_562348.1 91792697 4017625 1558159..1559292 1 NC_007954.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1559292 flhB 4017625 flhB Shewanella denitrificans OS217 flagellar biosynthesis protein FlhB YP_562348.1 1558159 D 318161 CDS YP_562349.1 91792698 4017626 1559392..1561491 1 NC_007954.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1561491 flhA 4017626 flhA Shewanella denitrificans OS217 flagellar biosynthesis protein FlhA YP_562349.1 1559392 D 318161 CDS YP_562350.1 91792699 4017627 1561521..1562909 1 NC_007954.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1562909 flhF 4017627 flhF Shewanella denitrificans OS217 flagellar biosynthesis regulator FlhF YP_562350.1 1561521 D 318161 CDS YP_562351.1 91792700 4017628 1562884..1563795 1 NC_007954.1 cobyrinic acid a,c-diamide synthase 1563795 4017628 Sden_1342 Shewanella denitrificans OS217 cobyrinic acid a,c-diamide synthase YP_562351.1 1562884 D 318161 CDS YP_562352.1 91792701 4017629 1563788..1564507 1 NC_007954.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1564507 fliA 4017629 fliA Shewanella denitrificans OS217 flagellar biosynthesis sigma factor YP_562352.1 1563788 D 318161 CDS YP_562353.1 91792702 4017630 1564551..1564934 1 NC_007954.1 response regulator receiver 1564934 4017630 Sden_1344 Shewanella denitrificans OS217 response regulator receiver YP_562353.1 1564551 D 318161 CDS YP_562354.1 91792703 4017631 1564949..1565686 1 NC_007954.1 chemotaxis phosphatase, CheZ 1565686 4017631 Sden_1345 Shewanella denitrificans OS217 chemotaxis phosphatase, CheZ YP_562354.1 1564949 D 318161 CDS YP_562355.1 91792704 4017632 1565702..1567906 1 NC_007954.1 ATP-binding region, ATPase-like protein 1567906 4017632 Sden_1346 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562355.1 1565702 D 318161 CDS YP_562356.1 91792705 4017633 1567932..1569098 1 NC_007954.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1569098 4017633 Sden_1347 Shewanella denitrificans OS217 chemotaxis-specific methylesterase YP_562356.1 1567932 D 318161 CDS YP_562357.1 91792706 4017634 1569103..1569522 1 NC_007954.1 hypothetical protein 1569522 4017634 Sden_1348 Shewanella denitrificans OS217 hypothetical protein YP_562357.1 1569103 D 318161 CDS YP_562358.1 91792707 4017635 1569553..1570344 1 NC_007954.1 cobyrinic acid a,c-diamide synthase 1570344 4017635 Sden_1349 Shewanella denitrificans OS217 cobyrinic acid a,c-diamide synthase YP_562358.1 1569553 D 318161 CDS YP_562359.1 91792708 4017636 1570328..1571359 1 NC_007954.1 CheW-like protein 1571359 4017636 Sden_1350 Shewanella denitrificans OS217 CheW-like protein YP_562359.1 1570328 D 318161 CDS YP_562360.1 91792709 4017637 1571362..1571856 1 NC_007954.1 CheW-like protein 1571856 4017637 Sden_1351 Shewanella denitrificans OS217 CheW-like protein YP_562360.1 1571362 D 318161 CDS YP_562361.1 91792710 4017638 1571953..1572351 1 NC_007954.1 hypothetical protein 1572351 4017638 Sden_1352 Shewanella denitrificans OS217 hypothetical protein YP_562361.1 1571953 D 318161 CDS YP_562362.1 91792711 4017639 complement(1572451..1572750) 1 NC_007954.1 FlhB domain-containing protein 1572750 4017639 Sden_1353 Shewanella denitrificans OS217 FlhB domain-containing protein YP_562362.1 1572451 R 318161 CDS YP_562363.1 91792712 4017640 complement(1572763..1574595) 1 NC_007954.1 hypothetical protein 1574595 4017640 Sden_1354 Shewanella denitrificans OS217 hypothetical protein YP_562363.1 1572763 R 318161 CDS YP_562364.1 91792713 4017641 1574964..1575734 1 NC_007954.1 VacJ-like lipoprotein 1575734 4017641 Sden_1355 Shewanella denitrificans OS217 VacJ-like lipoprotein YP_562364.1 1574964 D 318161 CDS YP_562365.1 91792714 4017642 1575787..1576947 1 NC_007954.1 response regulator receiver 1576947 4017642 Sden_1356 Shewanella denitrificans OS217 response regulator receiver YP_562365.1 1575787 D 318161 CDS YP_562366.1 91792715 4017604 complement(1577048..1578517) 1 NC_007954.1 amino acid/peptide transporter 1578517 4017604 Sden_1357 Shewanella denitrificans OS217 amino acid/peptide transporter YP_562366.1 1577048 R 318161 CDS YP_562367.1 91792716 4017605 1578944..1579573 1 NC_007954.1 OmpA/MotB 1579573 4017605 Sden_1358 Shewanella denitrificans OS217 OmpA/MotB YP_562367.1 1578944 D 318161 CDS YP_562368.1 91792717 4017606 1579594..1580421 1 NC_007954.1 MscS mechanosensitive ion channel 1580421 4017606 Sden_1359 Shewanella denitrificans OS217 MscS mechanosensitive ion channel YP_562368.1 1579594 D 318161 CDS YP_562369.1 91792718 4017607 1580418..1581032 1 NC_007954.1 antioxidant Tpx 1581032 4017607 Sden_1360 Shewanella denitrificans OS217 antioxidant Tpx YP_562369.1 1580418 D 318161 CDS YP_562370.1 91792719 4017608 1581140..1582168 1 NC_007954.1 threonine aldolase 1582168 4017608 Sden_1361 Shewanella denitrificans OS217 threonine aldolase YP_562370.1 1581140 D 318161 CDS YP_562371.1 91792720 4017609 1582533..1584554 1 NC_007954.1 choline/carnitine/betaine transport 1584554 4017609 Sden_1362 Shewanella denitrificans OS217 choline/carnitine/betaine transport YP_562371.1 1582533 D 318161 CDS YP_562372.1 91792721 4017610 1584681..1585043 1 NC_007954.1 hypothetical protein 1585043 4017610 Sden_1363 Shewanella denitrificans OS217 hypothetical protein YP_562372.1 1584681 D 318161 CDS YP_562373.1 91792722 4017611 complement(1585135..1586097) 1 NC_007954.1 hypothetical protein 1586097 4017611 Sden_1364 Shewanella denitrificans OS217 hypothetical protein YP_562373.1 1585135 R 318161 CDS YP_562374.1 91792723 4017612 1586674..1588377 1 NC_007954.1 ATP-binding region, ATPase-like protein 1588377 4017612 Sden_1365 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562374.1 1586674 D 318161 CDS YP_562375.1 91792724 4017613 1588374..1589783 1 NC_007954.1 sigma-54 factor, interaction region 1589783 4017613 Sden_1366 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_562375.1 1588374 D 318161 CDS YP_562376.1 91792725 4017614 complement(1589802..1590026) 1 NC_007954.1 hypothetical protein 1590026 4017614 Sden_1367 Shewanella denitrificans OS217 hypothetical protein YP_562376.1 1589802 R 318161 CDS YP_562377.1 91792726 4017615 1590119..1591525 1 NC_007954.1 hypothetical protein 1591525 4017615 Sden_1368 Shewanella denitrificans OS217 hypothetical protein YP_562377.1 1590119 D 318161 CDS YP_562378.1 91792727 4017616 1591836..1592885 1 NC_007954.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1592885 4017616 Sden_1369 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_562378.1 1591836 D 318161 CDS YP_562379.1 91792728 4017617 1593033..1593926 1 NC_007954.1 alpha/beta hydrolase 1593926 4017617 Sden_1370 Shewanella denitrificans OS217 alpha/beta hydrolase YP_562379.1 1593033 D 318161 CDS YP_562380.1 91792729 4017618 1594053..1595768 1 NC_007954.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1595768 4017618 Sden_1371 Shewanella denitrificans OS217 peptide synthase YP_562380.1 1594053 D 318161 CDS YP_562381.1 91792730 4017619 1595756..1596886 1 NC_007954.1 3-beta hydroxysteroid dehydrogenase/isomerase 1596886 4017619 Sden_1372 Shewanella denitrificans OS217 3-beta hydroxysteroid dehydrogenase/isomerase YP_562381.1 1595756 D 318161 CDS YP_562382.1 91792731 4017620 complement(1596942..1597622) 1 NC_007954.1 methyltransferase type 12 1597622 4017620 Sden_1373 Shewanella denitrificans OS217 methyltransferase type 12 YP_562382.1 1596942 R 318161 CDS YP_562383.1 91792732 4017621 1597765..1598214 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 1598214 4017621 Sden_1374 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_562383.1 1597765 D 318161 CDS YP_562384.1 91792733 4017622 1598279..1598980 1 NC_007954.1 aspartate racemase 1598980 4017622 Sden_1375 Shewanella denitrificans OS217 aspartate racemase YP_562384.1 1598279 D 318161 CDS YP_562385.1 91792734 4017739 complement(1599005..1600837) 1 NC_007954.1 thiamine pyrophosphate enzyme-like TPP binding region 1600837 4017739 Sden_1376 Shewanella denitrificans OS217 thiamine pyrophosphate enzyme-like TPP binding region YP_562385.1 1599005 R 318161 CDS YP_562386.1 91792735 4017740 1601194..1601556 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 1601556 4017740 Sden_1377 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_562386.1 1601194 D 318161 CDS YP_562387.1 91792736 4017741 1601602..1602015 1 NC_007954.1 GCN5-related N-acetyltransferase 1602015 4017741 Sden_1378 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562387.1 1601602 D 318161 CDS YP_562388.1 91792737 4017742 1602058..1602456 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 1602456 4017742 Sden_1379 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_562388.1 1602058 D 318161 CDS YP_562389.1 91792738 4017743 1602735..1603835 1 NC_007954.1 peptidyl-Lys metalloendopeptidase 1603835 4017743 Sden_1380 Shewanella denitrificans OS217 peptidyl-Lys metalloendopeptidase YP_562389.1 1602735 D 318161 CDS YP_562390.1 91792739 4017744 complement(1604034..1605119) 1 NC_007954.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 1605119 4017744 Sden_1381 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_562390.1 1604034 R 318161 CDS YP_562391.1 91792740 4017745 complement(1605201..1605884) 1 NC_007954.1 GntR family transcriptional regulator 1605884 4017745 Sden_1382 Shewanella denitrificans OS217 GntR family transcriptional regulator YP_562391.1 1605201 R 318161 CDS YP_562392.1 91792741 4017746 1606037..1606594 1 NC_007954.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1606594 4017746 Sden_1383 Shewanella denitrificans OS217 D,D-heptose 1,7-bisphosphate phosphatase YP_562392.1 1606037 D 318161 CDS YP_562393.1 91792742 4017752 1613441..1615603 1 NC_007954.1 catalase/peroxidase HPI 1615603 4017752 Sden_1384 Shewanella denitrificans OS217 catalase/peroxidase HPI YP_562393.1 1613441 D 318161 CDS YP_562394.1 91792743 4017753 complement(1615692..1616309) 1 NC_007954.1 glutathione S-transferase-like protein 1616309 4017753 Sden_1385 Shewanella denitrificans OS217 glutathione S-transferase-like protein YP_562394.1 1615692 R 318161 CDS YP_562395.1 91792744 4017349 complement(1616459..1617139) 1 NC_007954.1 ThiJ/PfpI 1617139 4017349 Sden_1386 Shewanella denitrificans OS217 ThiJ/PfpI YP_562395.1 1616459 R 318161 CDS YP_562396.1 91792745 4017350 complement(1617224..1618249) 1 NC_007954.1 zinc-binding alcohol dehydrogenase 1618249 4017350 Sden_1387 Shewanella denitrificans OS217 zinc-binding alcohol dehydrogenase YP_562396.1 1617224 R 318161 CDS YP_562397.1 91792746 4017351 complement(1618428..1619018) 1 NC_007954.1 regulatory protein, TetR 1619018 4017351 Sden_1388 Shewanella denitrificans OS217 regulatory protein, TetR YP_562397.1 1618428 R 318161 CDS YP_562398.1 91792747 4017352 1619279..1621945 1 NC_007954.1 GGDEF domain-containing protein 1621945 4017352 Sden_1389 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562398.1 1619279 D 318161 CDS YP_562399.1 91792748 4017353 1622167..1622565 1 NC_007954.1 4-hydroxybenzoyl-CoA thioesterase 1622565 4017353 Sden_1390 Shewanella denitrificans OS217 4-hydroxybenzoyl-CoA thioesterase YP_562399.1 1622167 D 318161 CDS YP_562400.1 91792749 4017354 1622555..1623244 1 NC_007954.1 MotA/TolQ/ExbB proton channel 1623244 4017354 Sden_1391 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_562400.1 1622555 D 318161 CDS YP_562401.1 91792750 4017355 1623244..1623672 1 NC_007954.1 biopolymer transport protein ExbD/TolR 1623672 4017355 Sden_1392 Shewanella denitrificans OS217 biopolymer transport protein ExbD/TolR YP_562401.1 1623244 D 318161 CDS YP_562402.1 91792751 4017356 1623673..1624659 1 NC_007954.1 hypothetical protein 1624659 4017356 Sden_1393 Shewanella denitrificans OS217 hypothetical protein YP_562402.1 1623673 D 318161 CDS YP_562403.1 91792752 4017357 1624669..1625997 1 NC_007954.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1625997 tolB 4017357 tolB Shewanella denitrificans OS217 translocation protein TolB YP_562403.1 1624669 D 318161 CDS YP_562404.1 91792753 4017358 1626021..1626557 1 NC_007954.1 OmpA/MotB 1626557 4017358 Sden_1395 Shewanella denitrificans OS217 OmpA/MotB YP_562404.1 1626021 D 318161 CDS YP_562405.1 91792754 4017359 1626618..1627403 1 NC_007954.1 tetratricopeptide TPR_2 1627403 4017359 Sden_1396 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_562405.1 1626618 D 318161 CDS YP_562406.1 91792755 4017334 complement(1629376..1630056) 1 NC_007954.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1630056 4017334 Sden_1397 Shewanella denitrificans OS217 ribonuclease T YP_562406.1 1629376 R 318161 CDS YP_562407.1 91792756 4017335 1630206..1631075 1 NC_007954.1 OmpA/MotB 1631075 4017335 Sden_1398 Shewanella denitrificans OS217 OmpA/MotB YP_562407.1 1630206 D 318161 CDS YP_562408.1 91792757 4017336 complement(1631687..1632289) 1 NC_007954.1 hypothetical protein 1632289 4017336 Sden_1399 Shewanella denitrificans OS217 hypothetical protein YP_562408.1 1631687 R 318161 CDS YP_562409.1 91792758 4017337 1632610..1633650 1 NC_007954.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1633650 queA 4017337 queA Shewanella denitrificans OS217 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_562409.1 1632610 D 318161 CDS YP_562410.1 91792759 4017338 1633803..1634936 1 NC_007954.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1634936 tgt 4017338 tgt Shewanella denitrificans OS217 queuine tRNA-ribosyltransferase YP_562410.1 1633803 D 318161 CDS YP_562411.1 91792760 4017339 1635013..1635288 1 NC_007954.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1635288 yajC 4017339 yajC Shewanella denitrificans OS217 preprotein translocase subunit YajC YP_562411.1 1635013 D 318161 CDS YP_562412.1 91792761 4017340 1635306..1637156 1 NC_007954.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1637156 secD 4017340 secD Shewanella denitrificans OS217 preprotein translocase subunit SecD YP_562412.1 1635306 D 318161 CDS YP_562413.1 91792762 4017341 1637169..1638116 1 NC_007954.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1638116 secF 4017341 secF Shewanella denitrificans OS217 preprotein translocase subunit SecF YP_562413.1 1637169 D 318161 CDS YP_562414.1 91792763 4017342 1638291..1638608 1 NC_007954.1 hypothetical protein 1638608 4017342 Sden_1405 Shewanella denitrificans OS217 hypothetical protein YP_562414.1 1638291 D 318161 CDS YP_562415.1 91792764 4017343 1638641..1639000 1 NC_007954.1 rhodanese-like protein 1639000 4017343 Sden_1406 Shewanella denitrificans OS217 rhodanese-like protein YP_562415.1 1638641 D 318161 CDS YP_562416.1 91792765 4017344 1639087..1640010 1 NC_007954.1 siroheme synthase 1640010 4017344 Sden_1407 Shewanella denitrificans OS217 siroheme synthase YP_562416.1 1639087 D 318161 CDS YP_562417.1 91792766 4017345 1640154..1640693 1 NC_007954.1 YaeQ 1640693 4017345 Sden_1408 Shewanella denitrificans OS217 YaeQ YP_562417.1 1640154 D 318161 CDS YP_562418.1 91792767 4017346 complement(1640820..1643231) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 1643231 4017346 Sden_1409 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_562418.1 1640820 R 318161 CDS YP_562419.1 91792768 4017347 complement(1644043..1644453) 1 NC_007954.1 rhodanese-like protein 1644453 4017347 Sden_1410 Shewanella denitrificans OS217 rhodanese-like protein YP_562419.1 1644043 R 318161 CDS YP_562420.1 91792769 4017348 complement(1644463..1644729) 1 NC_007954.1 hypothetical protein 1644729 4017348 Sden_1411 Shewanella denitrificans OS217 hypothetical protein YP_562420.1 1644463 R 318161 CDS YP_562421.1 91792770 4017437 complement(1644784..1648044) 1 NC_007954.1 acriflavin resistance protein 1648044 4017437 Sden_1412 Shewanella denitrificans OS217 acriflavin resistance protein YP_562421.1 1644784 R 318161 CDS YP_562422.1 91792771 4017438 complement(1648044..1649186) 1 NC_007954.1 secretion protein HlyD 1649186 4017438 Sden_1413 Shewanella denitrificans OS217 secretion protein HlyD YP_562422.1 1648044 R 318161 CDS YP_562423.1 91792772 4017439 complement(1649510..1650841) 1 NC_007954.1 aromatic hydrocarbon degradation membrane protein 1650841 4017439 Sden_1414 Shewanella denitrificans OS217 aromatic hydrocarbon degradation membrane protein YP_562423.1 1649510 R 318161 CDS YP_562424.1 91792773 4017440 complement(1651345..1651845) 1 NC_007954.1 hypothetical protein 1651845 4017440 Sden_1415 Shewanella denitrificans OS217 hypothetical protein YP_562424.1 1651345 R 318161 CDS YP_562425.1 91792774 4017441 complement(1652141..1652578) 1 NC_007954.1 hypothetical protein 1652578 4017441 Sden_1416 Shewanella denitrificans OS217 hypothetical protein YP_562425.1 1652141 R 318161 CDS YP_562426.1 91792775 4017442 complement(1652634..1654040) 1 NC_007954.1 DEAD/DEAH box helicase-like protein 1654040 4017442 Sden_1417 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_562426.1 1652634 R 318161 CDS YP_562427.1 91792776 4017443 1654172..1655173 1 NC_007954.1 patatin 1655173 4017443 Sden_1418 Shewanella denitrificans OS217 patatin YP_562427.1 1654172 D 318161 CDS YP_562428.1 91792777 4017444 1655508..1657622 1 NC_007954.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1657622 4017444 Sden_1419 Shewanella denitrificans OS217 anaerobic ribonucleoside triphosphate reductase YP_562428.1 1655508 D 318161 CDS YP_562429.1 91792778 4017445 1657651..1658124 1 NC_007954.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1658124 nrdG 4017445 nrdG Shewanella denitrificans OS217 anaerobic ribonucleotide reductase-activating protein YP_562429.1 1657651 D 318161 CDS YP_562430.1 91792779 4017446 1658274..1658837 1 NC_007954.1 NADPH-dependent FMN reductase 1658837 4017446 Sden_1421 Shewanella denitrificans OS217 NADPH-dependent FMN reductase YP_562430.1 1658274 D 318161 CDS YP_562431.1 91792780 4017447 1659020..1659454 1 NC_007954.1 hypothetical protein 1659454 4017447 Sden_1422 Shewanella denitrificans OS217 hypothetical protein YP_562431.1 1659020 D 318161 CDS YP_562432.1 91792781 4017448 complement(1659470..1660159) 1 NC_007954.1 hypothetical protein 1660159 4017448 Sden_1423 Shewanella denitrificans OS217 hypothetical protein YP_562432.1 1659470 R 318161 CDS YP_562433.1 91792782 4017449 1660404..1660901 1 NC_007954.1 hypothetical protein 1660901 4017449 Sden_1424 Shewanella denitrificans OS217 hypothetical protein YP_562433.1 1660404 D 318161 CDS YP_562434.1 91792783 4017450 1661004..1661213 1 NC_007954.1 transciptional regulator 1661213 4017450 Sden_1425 Shewanella denitrificans OS217 transciptional regulator YP_562434.1 1661004 D 318161 CDS YP_562435.1 91792784 4017451 complement(1661210..1661992) 1 NC_007954.1 hypothetical protein 1661992 4017451 Sden_1426 Shewanella denitrificans OS217 hypothetical protein YP_562435.1 1661210 R 318161 CDS YP_562436.1 91792785 4017452 1662243..1662842 1 NC_007954.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1662842 recR 4017452 recR Shewanella denitrificans OS217 recombination protein RecR YP_562436.1 1662243 D 318161 CDS YP_562437.1 91792786 4017453 1663086..1664999 1 NC_007954.1 molecular chaperone; heat shock protein 90 1664999 4017453 Sden_1428 Shewanella denitrificans OS217 heat shock protein 90 YP_562437.1 1663086 D 318161 CDS YP_562438.1 91792787 4017454 1665089..1665952 1 NC_007954.1 thioredoxin-related 1665952 4017454 Sden_1429 Shewanella denitrificans OS217 thioredoxin-related YP_562438.1 1665089 D 318161 CDS YP_562439.1 91792788 4017455 1666077..1666721 1 NC_007954.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1666721 adk 4017455 adk Shewanella denitrificans OS217 adenylate kinase YP_562439.1 1666077 D 318161 CDS YP_562440.1 91792789 4017456 1667053..1668357 1 NC_007954.1 inosine kinase 1668357 4017456 Sden_1431 Shewanella denitrificans OS217 inosine kinase YP_562440.1 1667053 D 318161 CDS YP_562441.1 91792790 4017421 1668470..1669297 1 NC_007954.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1669297 nadE 4017421 nadE Shewanella denitrificans OS217 NAD synthetase YP_562441.1 1668470 D 318161 CDS YP_562442.1 91792791 4017422 complement(1669303..1669968) 1 NC_007954.1 hypothetical protein 1669968 4017422 Sden_1433 Shewanella denitrificans OS217 hypothetical protein YP_562442.1 1669303 R 318161 CDS YP_562443.1 91792792 4017423 1670114..1671670 1 NC_007954.1 hypothetical protein 1671670 4017423 Sden_1434 Shewanella denitrificans OS217 hypothetical protein YP_562443.1 1670114 D 318161 CDS YP_562444.1 91792793 4017424 complement(1671783..1673984) 1 NC_007954.1 GGDEF domain-containing protein 1673984 4017424 Sden_1435 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562444.1 1671783 R 318161 CDS YP_562445.1 91792794 4017425 1674341..1674985 1 NC_007954.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1674985 4017425 Sden_1436 Shewanella denitrificans OS217 response regulator YP_562445.1 1674341 D 318161 CDS YP_562446.1 91792795 4017426 1675025..1676854 1 NC_007954.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1676854 uvrC 4017426 uvrC Shewanella denitrificans OS217 excinuclease ABC subunit C YP_562446.1 1675025 D 318161 CDS YP_562447.1 91792796 4017427 1676900..1677448 1 NC_007954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1677448 4017427 Sden_1438 Shewanella denitrificans OS217 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_562447.1 1676900 D 318161 CDS YP_562448.1 91792797 4017431 1678560..1679009 1 NC_007954.1 GCN5-related N-acetyltransferase 1679009 4017431 Sden_1439 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562448.1 1678560 D 318161 CDS YP_562449.1 91792798 4017432 1679496..1680125 1 NC_007954.1 helix-turn-helix, AraC type 1680125 4017432 Sden_1440 Shewanella denitrificans OS217 helix-turn-helix, AraC type YP_562449.1 1679496 D 318161 CDS YP_562450.1 91792799 4017433 1680133..1681071 1 NC_007954.1 hypothetical protein 1681071 4017433 Sden_1441 Shewanella denitrificans OS217 hypothetical protein YP_562450.1 1680133 D 318161 CDS YP_562451.1 91792800 4017434 1681231..1681629 1 NC_007954.1 NADPH-dependent FMN reductase 1681629 4017434 Sden_1442 Shewanella denitrificans OS217 NADPH-dependent FMN reductase YP_562451.1 1681231 D 318161 CDS YP_562452.1 91792801 4017435 1681744..1682136 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 1682136 4017435 Sden_1443 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_562452.1 1681744 D 318161 CDS YP_562453.1 91792802 4017754 complement(1682820..1685297) 1 NC_007954.1 TonB-dependent receptor, plug 1685297 4017754 Sden_1445 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_562453.1 1682820 R 318161 CDS YP_562454.1 91792803 4017755 1685578..1685934 1 NC_007954.1 hypothetical protein 1685934 4017755 Sden_1446 Shewanella denitrificans OS217 hypothetical protein YP_562454.1 1685578 D 318161 CDS YP_562455.1 91792804 4017756 1686025..1686642 1 NC_007954.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1686642 ribA 4017756 ribA Shewanella denitrificans OS217 GTP cyclohydrolase II YP_562455.1 1686025 D 318161 CDS YP_562456.1 91792805 4017757 1686668..1687519 1 NC_007954.1 hypothetical protein 1687519 4017757 Sden_1448 Shewanella denitrificans OS217 hypothetical protein YP_562456.1 1686668 D 318161 CDS YP_562457.1 91792806 4017758 complement(1687579..1687983) 1 NC_007954.1 hypothetical protein 1687983 4017758 Sden_1449 Shewanella denitrificans OS217 hypothetical protein YP_562457.1 1687579 R 318161 CDS YP_562458.1 91792807 4017759 complement(1688049..1688381) 1 NC_007954.1 RepA domain-containing protein 1688381 4017759 Sden_1450 Shewanella denitrificans OS217 RepA domain-containing protein YP_562458.1 1688049 R 318161 CDS YP_562459.1 91792808 4017760 complement(1688368..1689042) 1 NC_007954.1 hypothetical protein 1689042 4017760 Sden_1451 Shewanella denitrificans OS217 hypothetical protein YP_562459.1 1688368 R 318161 CDS YP_562460.1 91792809 4017761 complement(1689123..1689428) 1 NC_007954.1 hypothetical protein 1689428 4017761 Sden_1452 Shewanella denitrificans OS217 hypothetical protein YP_562460.1 1689123 R 318161 CDS YP_562461.1 91792810 4017762 complement(1689553..1689957) 1 NC_007954.1 phosphate-starvation-inducible E 1689957 4017762 Sden_1453 Shewanella denitrificans OS217 phosphate-starvation-inducible E YP_562461.1 1689553 R 318161 CDS YP_562462.1 91792811 4017763 complement(1690071..1690874) 1 NC_007954.1 inositol monophosphatase 1690874 4017763 Sden_1454 Shewanella denitrificans OS217 inositol monophosphatase YP_562462.1 1690071 R 318161 CDS YP_562463.1 91792812 4017764 1691036..1691815 1 NC_007954.1 RNA methyltransferase TrmH, group 1 1691815 4017764 Sden_1455 Shewanella denitrificans OS217 RNA methyltransferase TrmH, group 1 YP_562463.1 1691036 D 318161 CDS YP_562464.1 91792813 4017765 1691833..1692654 1 NC_007954.1 serine O-acetyltransferase 1692654 4017765 Sden_1456 Shewanella denitrificans OS217 serine O-acetyltransferase YP_562464.1 1691833 D 318161 CDS YP_562465.1 91792814 4017766 1692994..1693455 1 NC_007954.1 iron-sulfur cluster assembly transcription factor IscR 1693455 4017766 Sden_1457 Shewanella denitrificans OS217 iron-sulfur cluster assembly transcription factor IscR YP_562465.1 1692994 D 318161 CDS YP_562466.1 91792815 4017767 1693546..1694760 1 NC_007954.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1694760 4017767 Sden_1458 Shewanella denitrificans OS217 cysteine desulfurase YP_562466.1 1693546 D 318161 CDS YP_562467.1 91792816 4017768 1694797..1695180 1 NC_007954.1 scaffold protein 1695180 4017768 Sden_1459 Shewanella denitrificans OS217 scaffold protein YP_562467.1 1694797 D 318161 CDS YP_562468.1 91792817 4017769 1695195..1695518 1 NC_007954.1 iron-sulfur cluster assembly protein IscA 1695518 4017769 Sden_1460 Shewanella denitrificans OS217 iron-sulfur cluster assembly protein IscA YP_562468.1 1695195 D 318161 CDS YP_562469.1 91792818 4017770 1695566..1696090 1 NC_007954.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1696090 hscB 4017770 hscB Shewanella denitrificans OS217 co-chaperone HscB YP_562469.1 1695566 D 318161 CDS YP_562470.1 91792819 4017771 1696162..1698021 1 NC_007954.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1698021 hscA 4017771 hscA Shewanella denitrificans OS217 chaperone protein HscA YP_562470.1 1696162 D 318161 CDS YP_562471.1 91792820 4017772 1698030..1698365 1 NC_007954.1 ferredoxin, 2Fe-2S type 1698365 4017772 Sden_1463 Shewanella denitrificans OS217 ferredoxin, 2Fe-2S type YP_562471.1 1698030 D 318161 CDS YP_562472.1 91792821 4017773 1698682..1698978 1 NC_007954.1 cytochrome c, class I 1698978 4017773 Sden_1464 Shewanella denitrificans OS217 cytochrome c, class I YP_562472.1 1698682 D 318161 CDS YP_562473.1 91792822 4017702 complement(1699118..1699927) 1 NC_007954.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1699927 4017702 Sden_1465 Shewanella denitrificans OS217 exonuclease III YP_562473.1 1699118 R 318161 CDS YP_562474.1 91792823 4017703 complement(1699927..1700226) 1 NC_007954.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1700226 4017703 Sden_1466 Shewanella denitrificans OS217 YciI-like protein YP_562474.1 1699927 R 318161 CDS YP_562475.1 91792824 4017704 complement(1700267..1700812) 1 NC_007954.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1700812 4017704 Sden_1467 Shewanella denitrificans OS217 intracellular septation protein A YP_562475.1 1700267 R 318161 CDS YP_562476.1 91792825 4017705 1701077..1701769 1 NC_007954.1 aspartate racemase 1701769 4017705 Sden_1468 Shewanella denitrificans OS217 aspartate racemase YP_562476.1 1701077 D 318161 CDS YP_562477.1 91792826 4017706 1701837..1702265 1 NC_007954.1 diaminohydroxyphosphoribosylaminopyrimidine deaminase 1702265 4017706 Sden_1469 Shewanella denitrificans OS217 diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_562477.1 1701837 D 318161 CDS YP_562478.1 91792827 4017707 1702371..1703006 1 NC_007954.1 orphan protein 1703006 4017707 Sden_1470 Shewanella denitrificans OS217 orphan protein YP_562478.1 1702371 D 318161 CDS YP_562479.1 91792828 4017708 complement(1703206..1703610) 1 NC_007954.1 hypothetical protein 1703610 4017708 Sden_1471 Shewanella denitrificans OS217 hypothetical protein YP_562479.1 1703206 R 318161 CDS YP_562480.1 91792829 4017709 1703921..1704232 1 NC_007954.1 hypothetical protein 1704232 4017709 Sden_1472 Shewanella denitrificans OS217 hypothetical protein YP_562480.1 1703921 D 318161 CDS YP_562481.1 91792830 4017710 1704267..1705469 1 NC_007954.1 transposase, IS4 1705469 4017710 Sden_1473 Shewanella denitrificans OS217 transposase, IS4 YP_562481.1 1704267 D 318161 CDS YP_562482.1 91792831 4017711 1705672..1706142 1 NC_007954.1 GCN5-related N-acetyltransferase 1706142 4017711 Sden_1474 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562482.1 1705672 D 318161 CDS YP_562483.1 91792832 4017712 complement(1706898..1707926) 1 NC_007954.1 integrase catalytic subunit 1707926 4017712 Sden_1475 Shewanella denitrificans OS217 integrase catalytic subunit YP_562483.1 1706898 R 318161 CDS YP_562484.1 91792833 4017713 complement(1707953..1708453) 1 NC_007954.1 hypothetical protein 1708453 4017713 Sden_1476 Shewanella denitrificans OS217 hypothetical protein YP_562484.1 1707953 R 318161 CDS YP_562485.1 91792834 4017714 1708652..1709083 1 NC_007954.1 hypothetical protein 1709083 4017714 Sden_1477 Shewanella denitrificans OS217 hypothetical protein YP_562485.1 1708652 D 318161 CDS YP_562486.1 91792835 4017715 1709203..1709616 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 1709616 4017715 Sden_1478 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_562486.1 1709203 D 318161 CDS YP_562487.1 91792836 4017716 1709624..1710181 1 NC_007954.1 hypothetical protein 1710181 4017716 Sden_1479 Shewanella denitrificans OS217 hypothetical protein YP_562487.1 1709624 D 318161 CDS YP_562488.1 91792837 4017717 1710617..1711969 1 NC_007954.1 Na+/H+ antiporter NhaA 1711969 4017717 Sden_1480 Shewanella denitrificans OS217 Na+/H+ antiporter NhaA YP_562488.1 1710617 D 318161 CDS YP_562489.1 91792838 4017718 complement(1712131..1714395) 1 NC_007954.1 FAD dependent oxidoreductase 1714395 4017718 Sden_1481 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_562489.1 1712131 R 318161 CDS YP_562490.1 91792839 4017719 1714532..1715743 1 NC_007954.1 beta-ketoacyl synthase 1715743 4017719 Sden_1482 Shewanella denitrificans OS217 beta-ketoacyl synthase YP_562490.1 1714532 D 318161 CDS YP_562491.1 91792840 4017720 1715909..1717045 1 NC_007954.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 1717045 4017720 Sden_1483 Shewanella denitrificans OS217 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_562491.1 1715909 D 318161 CDS YP_562492.1 91792841 4017253 1717048..1718064 1 NC_007954.1 aspartate-semialdehyde dehydrogenase, USG-1 related 1718064 4017253 Sden_1484 Shewanella denitrificans OS217 aspartate-semialdehyde dehydrogenase, USG-1 related YP_562492.1 1717048 D 318161 CDS YP_562493.1 91792842 4017254 1718286..1723571 1 NC_007954.1 ATPase 1723571 4017254 Sden_1485 Shewanella denitrificans OS217 ATPase YP_562493.1 1718286 D 318161 CDS YP_562494.1 91792843 4017255 1723719..1724504 1 NC_007954.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1724504 truA 4017255 truA Shewanella denitrificans OS217 tRNA pseudouridine synthase A YP_562494.1 1723719 D 318161 CDS YP_562495.1 91792844 4017256 1724573..1725919 1 NC_007954.1 FolC bifunctional protein 1725919 4017256 Sden_1487 Shewanella denitrificans OS217 FolC bifunctional protein YP_562495.1 1724573 D 318161 CDS YP_562496.1 91792845 4017257 1726028..1726726 1 NC_007954.1 sporulation related 1726726 4017257 Sden_1488 Shewanella denitrificans OS217 sporulation related YP_562496.1 1726028 D 318161 CDS YP_562497.1 91792846 4017258 1726843..1727343 1 NC_007954.1 colicin V production protein 1727343 4017258 Sden_1489 Shewanella denitrificans OS217 colicin V production protein YP_562497.1 1726843 D 318161 CDS YP_562498.1 91792847 4017259 1727371..1728885 1 NC_007954.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1728885 4017259 Sden_1490 Shewanella denitrificans OS217 amidophosphoribosyltransferase YP_562498.1 1727371 D 318161 CDS YP_562499.1 91792848 4017260 complement(1729015..1730427) 1 NC_007954.1 hypothetical protein 1730427 4017260 Sden_1491 Shewanella denitrificans OS217 hypothetical protein YP_562499.1 1729015 R 318161 CDS YP_562500.1 91792849 4017261 1730630..1732516 1 NC_007954.1 hypothetical protein 1732516 4017261 Sden_1492 Shewanella denitrificans OS217 hypothetical protein YP_562500.1 1730630 D 318161 CDS YP_562501.1 91792850 4017262 complement(1732670..1733500) 1 NC_007954.1 methylated-DNA--protein-cysteine methyltransferase 1733500 4017262 Sden_1493 Shewanella denitrificans OS217 methylated-DNA--protein-cysteine methyltransferase YP_562501.1 1732670 R 318161 CDS YP_562502.1 91792851 4017263 complement(1733519..1734286) 1 NC_007954.1 short chain dehydrogenase 1734286 4017263 Sden_1494 Shewanella denitrificans OS217 short chain dehydrogenase YP_562502.1 1733519 R 318161 CDS YP_562503.1 91792852 4017264 1734963..1735175 1 NC_007954.1 periplasmic nitrate reductase NapE 1735175 4017264 Sden_1495 Shewanella denitrificans OS217 periplasmic nitrate reductase NapE YP_562503.1 1734963 D 318161 CDS YP_562504.1 91792853 4017265 1735235..1735492 1 NC_007954.1 NapD 1735492 4017265 Sden_1496 Shewanella denitrificans OS217 NapD YP_562504.1 1735235 D 318161 CDS YP_562505.1 91792854 4017266 1735495..1737984 1 NC_007954.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1737984 4017266 Sden_1497 Shewanella denitrificans OS217 nitrate reductase catalytic subunit YP_562505.1 1735495 D 318161 CDS YP_562506.1 91792855 4017267 1737996..1738466 1 NC_007954.1 nitrate reductase cytochrome c-type subunit (NapB) 1738466 4017267 Sden_1498 Shewanella denitrificans OS217 nitrate reductase cytochrome c-type subunit (NapB) YP_562506.1 1737996 D 318161 CDS YP_562507.1 91792856 4017268 1738475..1739062 1 NC_007954.1 periplasmic nitrate reductase c-type cytochrome, NapC/NirT 1739062 4017268 Sden_1499 Shewanella denitrificans OS217 periplasmic nitrate reductase c-type cytochrome, NapC/NirT YP_562507.1 1738475 D 318161 CDS YP_562508.1 91792857 4017269 complement(1739150..1739434) 1 NC_007954.1 histone-like DNA-binding protein 1739434 4017269 Sden_1500 Shewanella denitrificans OS217 histone-like DNA-binding protein YP_562508.1 1739150 R 318161 CDS YP_562509.1 91792858 4017270 1739692..1741188 1 NC_007954.1 peptidoglycan binding domain-containing protein 1741188 4017270 Sden_1501 Shewanella denitrificans OS217 peptidoglycan binding domain-containing protein YP_562509.1 1739692 D 318161 CDS YP_562510.1 91792859 4017271 1741358..1741906 1 NC_007954.1 hypothetical protein 1741906 4017271 Sden_1502 Shewanella denitrificans OS217 hypothetical protein YP_562510.1 1741358 D 318161 CDS YP_562511.1 91792860 4017272 1742231..1742518 1 NC_007954.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1742518 4017272 Sden_1503 Shewanella denitrificans OS217 50S ribosomal protein L25 YP_562511.1 1742231 D 318161 CDS YP_562512.1 91792861 4017383 complement(1742665..1746732) 1 NC_007954.1 hypothetical protein 1746732 4017383 Sden_1504 Shewanella denitrificans OS217 hypothetical protein YP_562512.1 1742665 R 318161 CDS YP_562513.1 91792862 4017384 complement(1746729..1748570) 1 NC_007954.1 surface antigen (D15) 1748570 4017384 Sden_1505 Shewanella denitrificans OS217 surface antigen (D15) YP_562513.1 1746729 R 318161 CDS YP_562514.1 91792863 4017385 1748842..1749258 1 NC_007954.1 CBS domain-containing protein 1749258 4017385 Sden_1506 Shewanella denitrificans OS217 CBS domain-containing protein YP_562514.1 1748842 D 318161 CDS YP_562515.1 91792864 4017386 1749355..1753230 1 NC_007954.1 ATP-dependent helicase HrpA 1753230 4017386 Sden_1507 Shewanella denitrificans OS217 ATP-dependent helicase HrpA YP_562515.1 1749355 D 318161 CDS YP_562516.1 91792865 4017387 1753273..1753626 1 NC_007954.1 hypothetical protein 1753626 4017387 Sden_1508 Shewanella denitrificans OS217 hypothetical protein YP_562516.1 1753273 D 318161 CDS YP_562517.1 91792866 4017388 complement(1753785..1756856) 1 NC_007954.1 acriflavin resistance protein 1756856 4017388 Sden_1509 Shewanella denitrificans OS217 acriflavin resistance protein YP_562517.1 1753785 R 318161 CDS YP_562518.1 91792867 4017389 complement(1756853..1757926) 1 NC_007954.1 secretion protein HlyD 1757926 4017389 Sden_1510 Shewanella denitrificans OS217 secretion protein HlyD YP_562518.1 1756853 R 318161 CDS YP_562519.1 91792868 4017390 complement(1757928..1759001) 1 NC_007954.1 secretion protein HlyD 1759001 4017390 Sden_1511 Shewanella denitrificans OS217 secretion protein HlyD YP_562519.1 1757928 R 318161 CDS YP_562520.1 91792869 4017391 1759191..1759931 1 NC_007954.1 regulatory protein, TetR 1759931 4017391 Sden_1512 Shewanella denitrificans OS217 regulatory protein, TetR YP_562520.1 1759191 D 318161 CDS YP_562521.1 91792870 4017392 complement(1760073..1760927) 1 NC_007954.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1760927 queF 4017392 queF Shewanella denitrificans OS217 7-cyano-7-deazaguanine reductase YP_562521.1 1760073 R 318161 CDS YP_562522.1 91792871 4017393 1760982..1761638 1 NC_007954.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1761638 4017393 Sden_1514 Shewanella denitrificans OS217 SecY interacting protein Syd YP_562522.1 1760982 D 318161 CDS YP_562523.1 91792872 4017394 complement(1761642..1762415) 1 NC_007954.1 hypothetical protein 1762415 4017394 Sden_1515 Shewanella denitrificans OS217 hypothetical protein YP_562523.1 1761642 R 318161 CDS YP_562524.1 91792873 4017395 complement(1762416..1762745) 1 NC_007954.1 hypothetical protein 1762745 4017395 Sden_1516 Shewanella denitrificans OS217 hypothetical protein YP_562524.1 1762416 R 318161 CDS YP_562525.1 91792874 4017396 1762938..1763321 1 NC_007954.1 hypothetical protein 1763321 4017396 Sden_1517 Shewanella denitrificans OS217 hypothetical protein YP_562525.1 1762938 D 318161 CDS YP_562526.1 91792875 4017397 complement(1763329..1763565) 1 NC_007954.1 hypothetical protein 1763565 4017397 Sden_1518 Shewanella denitrificans OS217 hypothetical protein YP_562526.1 1763329 R 318161 CDS YP_562527.1 91792876 4017398 1763682..1764320 1 NC_007954.1 GCN5-related N-acetyltransferase 1764320 4017398 Sden_1519 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562527.1 1763682 D 318161 CDS YP_562528.1 91792877 4017399 complement(1765264..1766715) 1 NC_007954.1 Sodium/proline symporter 1766715 4017399 Sden_1520 Shewanella denitrificans OS217 Sodium/proline symporter YP_562528.1 1765264 R 318161 CDS YP_562529.1 91792878 4017400 complement(1766993..1767697) 1 NC_007954.1 hypothetical protein 1767697 4017400 Sden_1521 Shewanella denitrificans OS217 hypothetical protein YP_562529.1 1766993 R 318161 CDS YP_562530.1 91792879 4017401 complement(1767690..1768253) 1 NC_007954.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1768253 4017401 Sden_1522 Shewanella denitrificans OS217 RNA polymerase sigma factor YP_562530.1 1767690 R 318161 CDS YP_562531.1 91792880 4017996 complement(1768349..1770109) 1 NC_007954.1 hypothetical protein 1770109 4017996 Sden_1523 Shewanella denitrificans OS217 hypothetical protein YP_562531.1 1768349 R 318161 CDS YP_562532.1 91792881 4017997 complement(1770103..1772178) 1 NC_007954.1 TPR repeat-containing protein 1772178 4017997 Sden_1524 Shewanella denitrificans OS217 TPR repeat-containing protein YP_562532.1 1770103 R 318161 CDS YP_562533.1 91792882 4017998 complement(1772178..1773170) 1 NC_007954.1 von Willebrand factor, type A 1773170 4017998 Sden_1525 Shewanella denitrificans OS217 von Willebrand factor, type A YP_562533.1 1772178 R 318161 CDS YP_562534.1 91792883 4017999 complement(1773174..1773683) 1 NC_007954.1 hypothetical protein 1773683 4017999 Sden_1526 Shewanella denitrificans OS217 hypothetical protein YP_562534.1 1773174 R 318161 CDS YP_562535.1 91792884 4018000 complement(1773684..1774619) 1 NC_007954.1 hypothetical protein 1774619 4018000 Sden_1527 Shewanella denitrificans OS217 hypothetical protein YP_562535.1 1773684 R 318161 CDS YP_562536.1 91792885 4018001 complement(1774641..1775597) 1 NC_007954.1 ATPase 1775597 4018001 Sden_1528 Shewanella denitrificans OS217 ATPase YP_562536.1 1774641 R 318161 CDS YP_562537.1 91792886 4018002 1775842..1777152 1 NC_007954.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1777152 fadI 4018002 fadI Shewanella denitrificans OS217 3-ketoacyl-CoA thiolase YP_562537.1 1775842 D 318161 CDS YP_562538.1 91792887 4018003 1777158..1779284 1 NC_007954.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1779284 fadJ 4018003 fadJ Shewanella denitrificans OS217 multifunctional fatty acid oxidation complex subunit alpha YP_562538.1 1777158 D 318161 CDS YP_562539.1 91792888 4018004 1779600..1779800 1 NC_007954.1 hypothetical protein 1779800 4018004 Sden_1531 Shewanella denitrificans OS217 hypothetical protein YP_562539.1 1779600 D 318161 CDS YP_562540.1 91792889 4018005 complement(1780435..1784787) 1 NC_007954.1 GGDEF domain-containing protein 1784787 4018005 Sden_1532 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562540.1 1780435 R 318161 CDS YP_562541.1 91792890 4018006 complement(1784955..1787744) 1 NC_007954.1 peptidase M16-like protein 1787744 4018006 Sden_1533 Shewanella denitrificans OS217 peptidase M16-like protein YP_562541.1 1784955 R 318161 CDS YP_562542.1 91792891 4018007 1788016..1788516 1 NC_007954.1 phosphohistidine phosphatase SixA 1788516 4018007 Sden_1534 Shewanella denitrificans OS217 phosphohistidine phosphatase SixA YP_562542.1 1788016 D 318161 CDS YP_562543.1 91792892 4018008 complement(1788557..1789090) 1 NC_007954.1 hypothetical protein 1789090 4018008 Sden_1535 Shewanella denitrificans OS217 hypothetical protein YP_562543.1 1788557 R 318161 CDS YP_562544.1 91792893 4018009 1789164..1790108 1 NC_007954.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1790108 4018009 Sden_1536 Shewanella denitrificans OS217 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_562544.1 1789164 D 318161 CDS YP_562545.1 91792894 4018010 1790233..1791327 1 NC_007954.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1791327 4018010 Sden_1537 Shewanella denitrificans OS217 chorismate synthase YP_562545.1 1790233 D 318161 CDS YP_562546.1 91792895 4018011 1791408..1792607 1 NC_007954.1 major facilitator transporter 1792607 4018011 Sden_1538 Shewanella denitrificans OS217 major facilitator transporter YP_562546.1 1791408 D 318161 CDS YP_562547.1 91792896 4018012 1792657..1793838 1 NC_007954.1 ATP-NAD/AcoX kinase 1793838 4018012 Sden_1539 Shewanella denitrificans OS217 ATP-NAD/AcoX kinase YP_562547.1 1792657 D 318161 CDS YP_562548.1 91792897 4018013 1793842..1794120 1 NC_007954.1 hypothetical protein 1794120 4018013 Sden_1540 Shewanella denitrificans OS217 hypothetical protein YP_562548.1 1793842 D 318161 CDS YP_562549.1 91792898 4018014 1794134..1794736 1 NC_007954.1 tRNA/rRNA methyltransferase (SpoU) 1794736 4018014 Sden_1541 Shewanella denitrificans OS217 tRNA/rRNA methyltransferase (SpoU) YP_562549.1 1794134 D 318161 CDS YP_562550.1 91792899 4018015 1794800..1795264 1 NC_007954.1 hypothetical protein 1795264 4018015 Sden_1542 Shewanella denitrificans OS217 hypothetical protein YP_562550.1 1794800 D 318161 CDS YP_562551.1 91792900 4018016 complement(1796751..1797137) 1 NC_007954.1 hypothetical protein 1797137 4018016 Sden_1543 Shewanella denitrificans OS217 hypothetical protein YP_562551.1 1796751 R 318161 CDS YP_562552.1 91792901 4018017 complement(1797134..1798177) 1 NC_007954.1 hypothetical protein 1798177 4018017 Sden_1544 Shewanella denitrificans OS217 hypothetical protein YP_562552.1 1797134 R 318161 CDS YP_562553.1 91792902 4018018 1798266..1798586 1 NC_007954.1 hypothetical protein 1798586 4018018 Sden_1545 Shewanella denitrificans OS217 hypothetical protein YP_562553.1 1798266 D 318161 CDS YP_562554.1 91792903 4018019 1798573..1799469 1 NC_007954.1 pseudouridylate synthase 1799469 4018019 Sden_1546 Shewanella denitrificans OS217 pseudouridylate synthase YP_562554.1 1798573 D 318161 CDS YP_562555.1 91792904 4018020 1799587..1800039 1 NC_007954.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1800039 4018020 Sden_1547 Shewanella denitrificans OS217 flavodoxin YP_562555.1 1799587 D 318161 CDS YP_562556.1 91792905 4018021 1800015..1801463 1 NC_007954.1 PTS system, glucose-like IIB component 1801463 4018021 Sden_1548 Shewanella denitrificans OS217 PTS system, glucose-like IIB component YP_562556.1 1800015 D 318161 CDS YP_562557.1 91792906 4018022 1801626..1802483 1 NC_007954.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1802483 purU 4018022 purU Shewanella denitrificans OS217 formyltetrahydrofolate deformylase YP_562557.1 1801626 D 318161 CDS YP_562558.1 91792907 4018023 complement(1802610..1802954) 1 NC_007954.1 hypothetical protein 1802954 4018023 Sden_1550 Shewanella denitrificans OS217 hypothetical protein YP_562558.1 1802610 R 318161 CDS YP_562559.1 91792908 4018024 complement(1803218..1804042) 1 NC_007954.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1804042 dapD 4018024 dapD Shewanella denitrificans OS217 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_562559.1 1803218 R 318161 CDS YP_562560.1 91792909 4018025 complement(1804074..1806659) 1 NC_007954.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1806659 4018025 Sden_1552 Shewanella denitrificans OS217 PII uridylyl-transferase YP_562560.1 1804074 R 318161 CDS YP_562561.1 91792910 4018026 complement(1806768..1807565) 1 NC_007954.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1807565 4018026 Sden_1553 Shewanella denitrificans OS217 methionine aminopeptidase YP_562561.1 1806768 R 318161 CDS YP_562562.1 91792911 4018028 1808003..1808731 1 NC_007954.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1808731 rpsB 4018028 rpsB Shewanella denitrificans OS217 30S ribosomal protein S2 YP_562562.1 1808003 D 318161 CDS YP_562563.1 91792912 4018029 1808848..1809699 1 NC_007954.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1809699 tsf 4018029 tsf Shewanella denitrificans OS217 elongation factor Ts YP_562563.1 1808848 D 318161 CDS YP_562564.1 91792913 4018030 1809767..1810498 1 NC_007954.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1810498 pyrH 4018030 pyrH Shewanella denitrificans OS217 uridylate kinase YP_562564.1 1809767 D 318161 CDS YP_562565.1 91792914 4018031 1810605..1811162 1 NC_007954.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1811162 frr 4018031 frr Shewanella denitrificans OS217 ribosome recycling factor YP_562565.1 1810605 D 318161 CDS YP_562566.1 91792915 4018032 1811308..1812123 1 NC_007954.1 UDP diphosphate synthase 1812123 4018032 Sden_1558 Shewanella denitrificans OS217 UDP diphosphate synthase YP_562566.1 1811308 D 318161 CDS YP_562567.1 91792916 4018033 1812145..1813002 1 NC_007954.1 phosphatidate cytidylyltransferase 1813002 4018033 Sden_1559 Shewanella denitrificans OS217 phosphatidate cytidylyltransferase YP_562567.1 1812145 D 318161 CDS YP_562568.1 91792917 4018034 1813006..1814211 1 NC_007954.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1814211 4018034 Sden_1560 Shewanella denitrificans OS217 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_562568.1 1813006 D 318161 CDS YP_562569.1 91792918 4018035 1814225..1815595 1 NC_007954.1 peptidase M50, membrane-associated zinc metallopeptidase 1815595 4018035 Sden_1561 Shewanella denitrificans OS217 peptidase M50, membrane-associated zinc metallopeptidase YP_562569.1 1814225 D 318161 CDS YP_562570.1 91792919 4018036 1815628..1818111 1 NC_007954.1 surface antigen (D15) 1818111 4018036 Sden_1562 Shewanella denitrificans OS217 surface antigen (D15) YP_562570.1 1815628 D 318161 CDS YP_562571.1 91792920 4018037 1818179..1818676 1 NC_007954.1 outer membrane chaperone Skp (OmpH) 1818676 4018037 Sden_1563 Shewanella denitrificans OS217 outer membrane chaperone Skp (OmpH) YP_562571.1 1818179 D 318161 CDS YP_562572.1 91792921 4018038 1818680..1819702 1 NC_007954.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1819702 lpxD 4018038 lpxD Shewanella denitrificans OS217 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_562572.1 1818680 D 318161 CDS YP_562573.1 91792922 4018039 1819730..1820191 1 NC_007954.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1820191 fabZ 4018039 fabZ Shewanella denitrificans OS217 (3R)-hydroxymyristoyl-ACP dehydratase YP_562573.1 1819730 D 318161 CDS YP_562574.1 91792923 4018040 1820188..1820958 1 NC_007954.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1820958 4018040 Sden_1566 Shewanella denitrificans OS217 UDP-N-acetylglucosamine acyltransferase YP_562574.1 1820188 D 318161 CDS YP_562575.1 91792924 4018041 1820992..1822143 1 NC_007954.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1822143 lpxB 4018041 lpxB Shewanella denitrificans OS217 lipid-A-disaccharide synthase YP_562575.1 1820992 D 318161 CDS YP_562576.1 91792925 4018042 1822231..1822875 1 NC_007954.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1822875 rnhB 4018042 rnhB Shewanella denitrificans OS217 ribonuclease HII YP_562576.1 1822231 D 318161 CDS YP_562577.1 91792926 4018043 1823085..1826564 1 NC_007954.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1826564 dnaE 4018043 dnaE Shewanella denitrificans OS217 DNA polymerase III subunit alpha YP_562577.1 1823085 D 318161 CDS YP_562578.1 91792927 4018044 1826662..1828092 1 NC_007954.1 tRNA(Ile)-lysidine synthetase-like protein 1828092 4018044 Sden_1570 Shewanella denitrificans OS217 tRNA(Ile)-lysidine synthetase-like protein YP_562578.1 1826662 D 318161 CDS YP_562579.1 91792928 4018046 complement(1828448..1829299) 1 NC_007954.1 integrase catalytic subunit 1829299 4018046 Sden_1571 Shewanella denitrificans OS217 integrase catalytic subunit YP_562579.1 1828448 R 318161 CDS YP_562580.1 91792929 4018047 complement(1829296..1829607) 1 NC_007954.1 transposase IS3/IS911 1829607 4018047 Sden_1572 Shewanella denitrificans OS217 transposase IS3/IS911 YP_562580.1 1829296 R 318161 CDS YP_562581.1 91792930 4018048 1830373..1831347 1 NC_007954.1 hypothetical protein 1831347 4018048 Sden_1573 Shewanella denitrificans OS217 hypothetical protein YP_562581.1 1830373 D 318161 CDS YP_562582.1 91792931 4018049 complement(1831344..1832285) 1 NC_007954.1 integrase catalytic subunit 1832285 4018049 Sden_1574 Shewanella denitrificans OS217 integrase catalytic subunit YP_562582.1 1831344 R 318161 CDS YP_562583.1 91792932 4018050 1832427..1833167 1 NC_007954.1 hypothetical protein 1833167 4018050 Sden_1575 Shewanella denitrificans OS217 hypothetical protein YP_562583.1 1832427 D 318161 CDS YP_562584.1 91792933 4018051 1833535..1834332 1 NC_007954.1 hypothetical protein 1834332 4018051 Sden_1576 Shewanella denitrificans OS217 hypothetical protein YP_562584.1 1833535 D 318161 CDS YP_562585.1 91792934 4018052 1834855..1835625 1 NC_007954.1 hypothetical protein 1835625 4018052 Sden_1577 Shewanella denitrificans OS217 hypothetical protein YP_562585.1 1834855 D 318161 CDS YP_562586.1 91792935 4018054 complement(1836856..1837968) 1 NC_007954.1 hypothetical protein 1837968 4018054 Sden_1579 Shewanella denitrificans OS217 hypothetical protein YP_562586.1 1836856 R 318161 CDS YP_562587.1 91792936 4018055 complement(1837980..1839629) 1 NC_007954.1 hypothetical protein 1839629 4018055 Sden_1580 Shewanella denitrificans OS217 hypothetical protein YP_562587.1 1837980 R 318161 CDS YP_562588.1 91792937 4018056 1839719..1840174 1 NC_007954.1 hypothetical protein 1840174 4018056 Sden_1581 Shewanella denitrificans OS217 hypothetical protein YP_562588.1 1839719 D 318161 CDS YP_562589.1 91792938 4018057 complement(1840302..1840709) 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 1840709 4018057 Sden_1582 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_562589.1 1840302 R 318161 CDS YP_562590.1 91792939 4018058 1841044..1841805 1 NC_007954.1 ABC transporter periplasmic-binding protein 1841805 4018058 Sden_1583 Shewanella denitrificans OS217 ABC transporter periplasmic-binding protein YP_562590.1 1841044 D 318161 CDS YP_562591.1 91792940 4018059 1842127..1842570 1 NC_007954.1 glutaredoxin 1842570 4018059 Sden_1584 Shewanella denitrificans OS217 glutaredoxin YP_562591.1 1842127 D 318161 CDS YP_562592.1 91792941 4018060 1842764..1843483 1 NC_007954.1 regulatory protein, TetR 1843483 4018060 Sden_1585 Shewanella denitrificans OS217 regulatory protein, TetR YP_562592.1 1842764 D 318161 CDS YP_562593.1 91792942 4018061 1843575..1844708 1 NC_007954.1 secretion protein HlyD 1844708 4018061 Sden_1586 Shewanella denitrificans OS217 secretion protein HlyD YP_562593.1 1843575 D 318161 CDS YP_562594.1 91792943 4018062 1844711..1847770 1 NC_007954.1 acriflavin resistance protein 1847770 4018062 Sden_1587 Shewanella denitrificans OS217 acriflavin resistance protein YP_562594.1 1844711 D 318161 CDS YP_562595.1 91792944 4018063 1848383..1848979 1 NC_007954.1 hypothetical protein 1848979 4018063 Sden_1588 Shewanella denitrificans OS217 hypothetical protein YP_562595.1 1848383 D 318161 CDS YP_562596.1 91792945 4018064 complement(1849079..1850053) 1 NC_007954.1 hypothetical protein 1850053 4018064 Sden_1589 Shewanella denitrificans OS217 hypothetical protein YP_562596.1 1849079 R 318161 CDS YP_562597.1 91792946 4018065 1850236..1850718 1 NC_007954.1 regulatory protein, MarR 1850718 4018065 Sden_1590 Shewanella denitrificans OS217 regulatory protein, MarR YP_562597.1 1850236 D 318161 CDS YP_562598.1 91792947 4018066 1850880..1851404 1 NC_007954.1 GCN5-related N-acetyltransferase 1851404 4018066 Sden_1591 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562598.1 1850880 D 318161 CDS YP_562599.1 91792948 4018067 complement(1851473..1852207) 1 NC_007954.1 EAL domain-containing protein 1852207 4018067 Sden_1592 Shewanella denitrificans OS217 EAL domain-containing protein YP_562599.1 1851473 R 318161 CDS YP_562600.1 91792949 4018068 complement(1852441..1852872) 1 NC_007954.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 1852872 fur 4018068 fur Shewanella denitrificans OS217 ferric uptake regulator YP_562600.1 1852441 R 318161 CDS YP_562601.1 91792950 4018069 1853162..1853923 1 NC_007954.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1853923 4018069 Sden_1594 Shewanella denitrificans OS217 NAD-dependent deacetylase YP_562601.1 1853162 D 318161 CDS YP_562602.1 91792951 4018070 1853916..1854410 1 NC_007954.1 hypothetical protein 1854410 4018070 Sden_1595 Shewanella denitrificans OS217 hypothetical protein YP_562602.1 1853916 D 318161 CDS YP_562603.1 91792952 4018071 complement(1854602..1856665) 1 NC_007954.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 1856665 cpdB 4018071 cpdB Shewanella denitrificans OS217 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_562603.1 1854602 R 318161 CDS YP_562604.1 91792953 4018072 complement(1856912..1859092) 1 NC_007954.1 peptidyl-dipeptidase Dcp 1859092 4018072 Sden_1597 Shewanella denitrificans OS217 peptidyl-dipeptidase Dcp YP_562604.1 1856912 R 318161 CDS YP_562605.1 91792954 4018073 complement(1859327..1859725) 1 NC_007954.1 ABC-type phosphate transport system, periplasmic component 1859725 4018073 Sden_1598 Shewanella denitrificans OS217 ABC-type phosphate transport system, periplasmic component YP_562605.1 1859327 R 318161 CDS YP_562606.1 91792955 4018074 complement(1859741..1860985) 1 NC_007954.1 hypothetical protein 1860985 4018074 Sden_1599 Shewanella denitrificans OS217 hypothetical protein YP_562606.1 1859741 R 318161 CDS YP_562607.1 91792956 4018075 complement(1861068..1862684) 1 NC_007954.1 chemotaxis sensory transducer 1862684 4018075 Sden_1600 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_562607.1 1861068 R 318161 CDS YP_562608.1 91792957 4018076 complement(1863229..1864731) 1 NC_007954.1 chemotaxis sensory transducer 1864731 4018076 Sden_1601 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_562608.1 1863229 R 318161 CDS YP_562609.1 91792958 4018077 1865192..1866175 1 NC_007954.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1866175 pheS 4018077 pheS Shewanella denitrificans OS217 phenylalanyl-tRNA synthetase subunit alpha YP_562609.1 1865192 D 318161 CDS YP_562610.1 91792959 4018078 1866191..1868578 1 NC_007954.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1868578 pheT 4018078 pheT Shewanella denitrificans OS217 phenylalanyl-tRNA synthetase subunit beta YP_562610.1 1866191 D 318161 CDS YP_562611.1 91792960 4018079 1868582..1868881 1 NC_007954.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1868881 ihfA 4018079 ihfA Shewanella denitrificans OS217 integration host factor subunit alpha YP_562611.1 1868582 D 318161 CDS YP_562612.1 91792961 4018080 1869028..1869963 1 NC_007954.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1869963 4018080 Sden_1605 Shewanella denitrificans OS217 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_562612.1 1869028 D 318161 CDS YP_562613.1 91792962 4018081 1870042..1870965 1 NC_007954.1 MscS mechanosensitive ion channel 1870965 4018081 Sden_1606 Shewanella denitrificans OS217 MscS mechanosensitive ion channel YP_562613.1 1870042 D 318161 CDS YP_562614.1 91792963 4018082 1871014..1871400 1 NC_007954.1 hypothetical protein 1871400 4018082 Sden_1607 Shewanella denitrificans OS217 hypothetical protein YP_562614.1 1871014 D 318161 CDS YP_562615.1 91792964 4018083 complement(1871768..1872700) 1 NC_007954.1 hypothetical protein 1872700 4018083 Sden_1608 Shewanella denitrificans OS217 hypothetical protein YP_562615.1 1871768 R 318161 CDS YP_562616.1 91792965 4018084 complement(1873079..1873228) 1 NC_007954.1 hypothetical protein 1873228 4018084 Sden_1609 Shewanella denitrificans OS217 hypothetical protein YP_562616.1 1873079 R 318161 CDS YP_562617.1 91792966 4018085 complement(1873536..1874513) 1 NC_007954.1 hypothetical protein 1874513 4018085 Sden_1610 Shewanella denitrificans OS217 hypothetical protein YP_562617.1 1873536 R 318161 CDS YP_562618.1 91792967 4018086 complement(1874994..1875653) 1 NC_007954.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1875653 4018086 Sden_1611 Shewanella denitrificans OS217 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_562618.1 1874994 R 318161 CDS YP_562619.1 91792968 4018087 complement(1875669..1876442) 1 NC_007954.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1876442 4018087 Sden_1612 Shewanella denitrificans OS217 imidazole glycerol phosphate synthase subunit HisF YP_562619.1 1875669 R 318161 CDS YP_562620.1 91792969 4018088 complement(1876424..1877176) 1 NC_007954.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1877176 4018088 Sden_1613 Shewanella denitrificans OS217 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_562620.1 1876424 R 318161 CDS YP_562621.1 91792970 4018089 complement(1877173..1877892) 1 NC_007954.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1877892 hisH 4018089 hisH Shewanella denitrificans OS217 imidazole glycerol phosphate synthase subunit HisH YP_562621.1 1877173 R 318161 CDS YP_562622.1 91792971 4018090 complement(1877902..1878969) 1 NC_007954.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1878969 4018090 Sden_1615 Shewanella denitrificans OS217 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_562622.1 1877902 R 318161 CDS YP_562623.1 91792972 4018091 complement(1879034..1880092) 1 NC_007954.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1880092 4018091 Sden_1616 Shewanella denitrificans OS217 histidinol-phosphate aminotransferase YP_562623.1 1879034 R 318161 CDS YP_562624.1 91792973 4018092 complement(1880079..1881395) 1 NC_007954.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1881395 hisD 4018092 hisD Shewanella denitrificans OS217 histidinol dehydrogenase YP_562624.1 1880079 R 318161 CDS YP_562625.1 91792974 4018093 complement(1881400..1882299) 1 NC_007954.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1882299 hisG 4018093 hisG Shewanella denitrificans OS217 ATP phosphoribosyltransferase YP_562625.1 1881400 R 318161 CDS YP_562626.1 91792975 4018094 1882873..1884762 1 NC_007954.1 helicase c2 1884762 4018094 Sden_1619 Shewanella denitrificans OS217 helicase c2 YP_562626.1 1882873 D 318161 CDS YP_562627.1 91792976 4018095 1884806..1885510 1 NC_007954.1 peptidase M22, glycoprotease 1885510 4018095 Sden_1620 Shewanella denitrificans OS217 peptidase M22, glycoprotease YP_562627.1 1884806 D 318161 CDS YP_562628.1 91792977 4018096 1885620..1885961 1 NC_007954.1 hypothetical protein 1885961 4018096 Sden_1621 Shewanella denitrificans OS217 hypothetical protein YP_562628.1 1885620 D 318161 CDS YP_562629.1 91792978 4018097 1885954..1886637 1 NC_007954.1 hypothetical protein 1886637 4018097 Sden_1622 Shewanella denitrificans OS217 hypothetical protein YP_562629.1 1885954 D 318161 CDS YP_562630.1 91792979 4018098 1886708..1887577 1 NC_007954.1 hypothetical protein 1887577 4018098 Sden_1623 Shewanella denitrificans OS217 hypothetical protein YP_562630.1 1886708 D 318161 CDS YP_562631.1 91792980 4018099 1887733..1888653 1 NC_007954.1 alpha/beta hydrolase fold 1888653 4018099 Sden_1624 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562631.1 1887733 D 318161 CDS YP_562632.1 91792981 4018100 1888857..1890530 1 NC_007954.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1890530 4018100 Sden_1625 Shewanella denitrificans OS217 long-chain-fatty-acid--CoA ligase YP_562632.1 1888857 D 318161 CDS YP_562633.1 91792982 4018101 1890635..1891750 1 NC_007954.1 ribonuclease D 1891750 4018101 Sden_1626 Shewanella denitrificans OS217 ribonuclease D YP_562633.1 1890635 D 318161 CDS YP_562634.1 91792983 4018102 complement(1891817..1892083) 1 NC_007954.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1892083 minE 4018102 minE Shewanella denitrificans OS217 cell division topological specificity factor MinE YP_562634.1 1891817 R 318161 CDS YP_562635.1 91792984 4018103 complement(1892086..1892895) 1 NC_007954.1 septum site-determining protein MinD 1892895 4018103 Sden_1628 Shewanella denitrificans OS217 septum site-determining protein MinD YP_562635.1 1892086 R 318161 CDS YP_562636.1 91792985 4018104 complement(1892925..1893590) 1 NC_007954.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1893590 minC 4018104 minC Shewanella denitrificans OS217 septum formation inhibitor YP_562636.1 1892925 R 318161 CDS YP_562637.1 91792986 4018105 1893714..1894001 1 NC_007954.1 hypothetical protein 1894001 4018105 Sden_1630 Shewanella denitrificans OS217 hypothetical protein YP_562637.1 1893714 D 318161 CDS YP_562638.1 91792987 4018106 1894062..1895051 1 NC_007954.1 membrane-bound lytic murein transglycosylase B 1895051 4018106 Sden_1631 Shewanella denitrificans OS217 membrane-bound lytic murein transglycosylase B YP_562638.1 1894062 D 318161 CDS YP_562639.1 91792988 4018107 1895112..1895552 1 NC_007954.1 hypothetical protein 1895552 4018107 Sden_1632 Shewanella denitrificans OS217 hypothetical protein YP_562639.1 1895112 D 318161 CDS YP_562640.1 91792989 4018108 complement(1895611..1896138) 1 NC_007954.1 disulphide bond formation protein DsbB 1896138 4018108 Sden_1633 Shewanella denitrificans OS217 disulphide bond formation protein DsbB YP_562640.1 1895611 R 318161 CDS YP_562641.1 91792990 4018109 complement(1896237..1897823) 1 NC_007954.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1897823 nhaB 4018109 nhaB Shewanella denitrificans OS217 sodium/proton antiporter YP_562641.1 1896237 R 318161 CDS YP_562642.1 91792991 4018110 1898301..1899020 1 NC_007954.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1899020 4018110 Sden_1635 Shewanella denitrificans OS217 fatty acid metabolism regulator YP_562642.1 1898301 D 318161 CDS YP_562643.1 91792992 4018111 complement(1899112..1900626) 1 NC_007954.1 SpoVR family protein 1900626 4018111 Sden_1636 Shewanella denitrificans OS217 SpoVR family protein YP_562643.1 1899112 R 318161 CDS YP_562644.1 91792993 4018112 complement(1900636..1901901) 1 NC_007954.1 hypothetical protein 1901901 4018112 Sden_1637 Shewanella denitrificans OS217 hypothetical protein YP_562644.1 1900636 R 318161 CDS YP_562645.1 91792994 4018113 complement(1901962..1903896) 1 NC_007954.1 PrkA AAA 1903896 4018113 Sden_1638 Shewanella denitrificans OS217 PrkA AAA YP_562645.1 1901962 R 318161 CDS YP_562646.1 91792995 4018114 complement(1904190..1904774) 1 NC_007954.1 superoxide dismutase 1904774 4018114 Sden_1639 Shewanella denitrificans OS217 superoxide dismutase YP_562646.1 1904190 R 318161 CDS YP_562647.1 91792996 4018115 1904996..1905331 1 NC_007954.1 glutaredoxin-like protein 1905331 4018115 Sden_1640 Shewanella denitrificans OS217 glutaredoxin-like protein YP_562647.1 1904996 D 318161 CDS YP_562648.1 91792997 4018116 complement(1905432..1906655) 1 NC_007954.1 uracil-xanthine permease 1906655 4018116 Sden_1641 Shewanella denitrificans OS217 uracil-xanthine permease YP_562648.1 1905432 R 318161 CDS YP_562649.1 91792998 4018117 1906748..1907926 1 NC_007954.1 hypothetical protein 1907926 4018117 Sden_1642 Shewanella denitrificans OS217 hypothetical protein YP_562649.1 1906748 D 318161 CDS YP_562650.1 91792999 4018118 1907992..1908702 1 NC_007954.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1908702 4018118 Sden_1643 Shewanella denitrificans OS217 DNA replication initiation factor YP_562650.1 1907992 D 318161 CDS YP_562651.1 91793000 4018119 complement(1908771..1910759) 1 NC_007954.1 hypothetical protein 1910759 4018119 Sden_1644 Shewanella denitrificans OS217 hypothetical protein YP_562651.1 1908771 R 318161 CDS YP_562652.1 91793001 4018120 complement(1910834..1911262) 1 NC_007954.1 hypothetical protein 1911262 4018120 Sden_1645 Shewanella denitrificans OS217 hypothetical protein YP_562652.1 1910834 R 318161 CDS YP_562653.1 91793002 4018121 complement(1911264..1911614) 1 NC_007954.1 arsenate reductase 1911614 4018121 Sden_1646 Shewanella denitrificans OS217 arsenate reductase YP_562653.1 1911264 R 318161 CDS YP_562654.1 91793003 4018122 complement(1911761..1913233) 1 NC_007954.1 peptidase M48, Ste24p 1913233 4018122 Sden_1647 Shewanella denitrificans OS217 peptidase M48, Ste24p YP_562654.1 1911761 R 318161 CDS YP_562655.1 91793004 4018123 1913384..1913602 1 NC_007954.1 hypothetical protein 1913602 4018123 Sden_1648 Shewanella denitrificans OS217 hypothetical protein YP_562655.1 1913384 D 318161 CDS YP_562656.1 91793005 4018124 1913820..1914902 1 NC_007954.1 hypothetical protein 1914902 4018124 Sden_1649 Shewanella denitrificans OS217 hypothetical protein YP_562656.1 1913820 D 318161 CDS YP_562657.1 91793006 4018125 1914964..1916352 1 NC_007954.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1916352 fumC 4018125 fumC Shewanella denitrificans OS217 fumarate hydratase YP_562657.1 1914964 D 318161 CDS YP_562658.1 91793007 4018126 complement(1916383..1916772) 1 NC_007954.1 hypothetical protein 1916772 4018126 Sden_1651 Shewanella denitrificans OS217 hypothetical protein YP_562658.1 1916383 R 318161 CDS YP_562659.1 91793008 4018127 1916961..1918433 1 NC_007954.1 protein kinase 1918433 4018127 Sden_1652 Shewanella denitrificans OS217 protein kinase YP_562659.1 1916961 D 318161 CDS YP_562660.1 91793009 4018128 1918507..1918971 1 NC_007954.1 uracil-DNA glycosylase family protein 1918971 4018128 Sden_1653 Shewanella denitrificans OS217 uracil-DNA glycosylase family protein YP_562660.1 1918507 D 318161 CDS YP_562661.1 91793010 4018129 complement(1919092..1919991) 1 NC_007954.1 protein of unknown function RIO1 1919991 4018129 Sden_1654 Shewanella denitrificans OS217 protein of unknown function RIO1 YP_562661.1 1919092 R 318161 CDS YP_562662.1 91793011 4018131 complement(1920888..1922639) 1 NC_007954.1 gamma-glutamyltransferase 1922639 4018131 Sden_1655 Shewanella denitrificans OS217 gamma-glutamyltransferase YP_562662.1 1920888 R 318161 CDS YP_562663.1 91793012 4018132 1922790..1924091 1 NC_007954.1 hypothetical protein 1924091 4018132 Sden_1656 Shewanella denitrificans OS217 hypothetical protein YP_562663.1 1922790 D 318161 CDS YP_562664.1 91793013 4018133 complement(1924427..1925776) 1 NC_007954.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1925776 4018133 Sden_1657 Shewanella denitrificans OS217 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_562664.1 1924427 R 318161 CDS YP_562665.1 91793014 4018134 1925875..1926948 1 NC_007954.1 biotin synthase 1926948 4018134 Sden_1658 Shewanella denitrificans OS217 biotin synthase YP_562665.1 1925875 D 318161 CDS YP_562666.1 91793015 4018135 1927054..1928274 1 NC_007954.1 8-amino-7-oxononanoate synthase 1928274 4018135 Sden_1659 Shewanella denitrificans OS217 8-amino-7-oxononanoate synthase YP_562666.1 1927054 D 318161 CDS YP_562667.1 91793016 4018136 1928274..1929203 1 NC_007954.1 methyltransferase type 11 1929203 4018136 Sden_1660 Shewanella denitrificans OS217 methyltransferase type 11 YP_562667.1 1928274 D 318161 CDS YP_562668.1 91793017 4018137 1929229..1929924 1 NC_007954.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1929924 bioD 4018137 bioD Shewanella denitrificans OS217 dithiobiotin synthetase YP_562668.1 1929229 D 318161 CDS YP_562669.1 91793018 4018138 1930154..1931755 1 NC_007954.1 GGDEF domain-containing protein 1931755 4018138 Sden_1662 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562669.1 1930154 D 318161 CDS YP_562670.1 91793019 4018139 1931845..1932501 1 NC_007954.1 GntR-like protein 1932501 4018139 Sden_1663 Shewanella denitrificans OS217 GntR-like protein YP_562670.1 1931845 D 318161 CDS YP_562671.1 91793020 4018140 1932544..1933422 1 NC_007954.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1933422 prpB 4018140 prpB Shewanella denitrificans OS217 2-methylisocitrate lyase YP_562671.1 1932544 D 318161 CDS YP_562672.1 91793021 4018141 1933527..1934651 1 NC_007954.1 2-methylcitrate synthase/citrate synthase II 1934651 4018141 Sden_1665 Shewanella denitrificans OS217 2-methylcitrate synthase/citrate synthase II YP_562672.1 1933527 D 318161 CDS YP_562673.1 91793022 4018142 1934776..1937379 1 NC_007954.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1937379 4018142 Sden_1666 Shewanella denitrificans OS217 aconitate hydratase YP_562673.1 1934776 D 318161 CDS YP_562674.1 91793023 4018143 1937579..1938775 1 NC_007954.1 PrpF, AcnD-accessory 1938775 4018143 Sden_1667 Shewanella denitrificans OS217 PrpF, AcnD-accessory YP_562674.1 1937579 D 318161 CDS YP_562675.1 91793024 4018144 1938979..1940172 1 NC_007954.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1940172 4018144 Sden_1668 Shewanella denitrificans OS217 aromatic amino acid aminotransferase YP_562675.1 1938979 D 318161 CDS YP_562676.1 91793025 4018145 complement(1940279..1941229) 1 NC_007954.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1941229 4018145 Sden_1669 Shewanella denitrificans OS217 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_562676.1 1940279 R 318161 CDS YP_562677.1 91793026 4018146 1941364..1942227 1 NC_007954.1 acyl-CoA thioesterase II 1942227 4018146 Sden_1670 Shewanella denitrificans OS217 acyl-CoA thioesterase II YP_562677.1 1941364 D 318161 CDS YP_562678.1 91793027 4018147 1942224..1942652 1 NC_007954.1 hypothetical protein 1942652 4018147 Sden_1671 Shewanella denitrificans OS217 hypothetical protein YP_562678.1 1942224 D 318161 CDS YP_562679.1 91793028 4018148 1942657..1943970 1 NC_007954.1 major facilitator transporter 1943970 4018148 Sden_1672 Shewanella denitrificans OS217 major facilitator transporter YP_562679.1 1942657 D 318161 CDS YP_562680.1 91793029 4018149 complement(1944126..1945274) 1 NC_007954.1 hypothetical protein 1945274 4018149 Sden_1673 Shewanella denitrificans OS217 hypothetical protein YP_562680.1 1944126 R 318161 CDS YP_562681.1 91793030 4018150 complement(1945274..1948813) 1 NC_007954.1 transcription-repair coupling factor 1948813 4018150 Sden_1674 Shewanella denitrificans OS217 transcription-repair coupling factor YP_562681.1 1945274 R 318161 CDS YP_562682.1 91793031 4018151 complement(1948967..1949635) 1 NC_007954.1 hypothetical protein 1949635 4018151 Sden_1675 Shewanella denitrificans OS217 hypothetical protein YP_562682.1 1948967 R 318161 CDS YP_562683.1 91793032 4018152 1949768..1951003 1 NC_007954.1 LolC/E family lipoprotein releasing system, transmembrane protein 1951003 4018152 Sden_1676 Shewanella denitrificans OS217 LolC/E family lipoprotein releasing system, transmembrane protein YP_562683.1 1949768 D 318161 CDS YP_562684.1 91793033 4018153 1951093..1951794 1 NC_007954.1 lipoprotein releasing system, ATP-binding protein 1951794 4018153 Sden_1677 Shewanella denitrificans OS217 lipoprotein releasing system, ATP-binding protein YP_562684.1 1951093 D 318161 CDS YP_562685.1 91793034 4018154 1951791..1953056 1 NC_007954.1 LolC/E family lipoprotein releasing system, transmembrane protein 1953056 4018154 Sden_1678 Shewanella denitrificans OS217 LolC/E family lipoprotein releasing system, transmembrane protein YP_562685.1 1951791 D 318161 CDS YP_562686.1 91793035 4018155 1953232..1954266 1 NC_007954.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1954266 4018155 Sden_1679 Shewanella denitrificans OS217 dihydroorotase YP_562686.1 1953232 D 318161 CDS YP_562687.1 91793036 4018156 1954542..1956398 1 NC_007954.1 arachidonate 15-lipoxygenase 1956398 4018156 Sden_1680 Shewanella denitrificans OS217 arachidonate 15-lipoxygenase YP_562687.1 1954542 D 318161 CDS YP_562688.1 91793037 4018157 complement(1956512..1958227) 1 NC_007954.1 hypothetical protein 1958227 4018157 Sden_1681 Shewanella denitrificans OS217 hypothetical protein YP_562688.1 1956512 R 318161 CDS YP_562689.1 91793038 4018158 1958481..1959380 1 NC_007954.1 hypothetical protein 1959380 4018158 Sden_1682 Shewanella denitrificans OS217 hypothetical protein YP_562689.1 1958481 D 318161 CDS YP_562690.1 91793039 4018159 1959526..1964505 1 NC_007954.1 multi-sensor hybrid histidine kinase 1964505 4018159 Sden_1683 Shewanella denitrificans OS217 multi-sensor hybrid histidine kinase YP_562690.1 1959526 D 318161 CDS YP_562691.1 91793040 4018160 1964499..1965470 1 NC_007954.1 GGDEF domain-containing protein 1965470 4018160 Sden_1684 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562691.1 1964499 D 318161 CDS YP_562692.1 91793041 4018161 complement(1965500..1966807) 1 NC_007954.1 hypothetical protein 1966807 4018161 Sden_1685 Shewanella denitrificans OS217 hypothetical protein YP_562692.1 1965500 R 318161 CDS YP_562693.1 91793042 4018162 1966954..1967457 1 NC_007954.1 hypothetical protein 1967457 4018162 Sden_1686 Shewanella denitrificans OS217 hypothetical protein YP_562693.1 1966954 D 318161 CDS YP_562694.1 91793043 4018163 1967457..1967681 1 NC_007954.1 helix-turn-helix type 3 1967681 4018163 Sden_1687 Shewanella denitrificans OS217 helix-turn-helix type 3 YP_562694.1 1967457 D 318161 CDS YP_562695.1 91793044 4018164 1968480..1969034 1 NC_007954.1 hypothetical protein 1969034 4018164 Sden_1688 Shewanella denitrificans OS217 hypothetical protein YP_562695.1 1968480 D 318161 CDS YP_562696.1 91793045 4018165 1969233..1969733 1 NC_007954.1 hypothetical protein 1969733 4018165 Sden_1689 Shewanella denitrificans OS217 hypothetical protein YP_562696.1 1969233 D 318161 CDS YP_562697.1 91793046 4018166 1969913..1970353 1 NC_007954.1 hypothetical protein 1970353 4018166 Sden_1690 Shewanella denitrificans OS217 hypothetical protein YP_562697.1 1969913 D 318161 CDS YP_562698.1 91793047 4018167 1970507..1985092 1 NC_007954.1 hypothetical protein 1985092 4018167 Sden_1691 Shewanella denitrificans OS217 hypothetical protein YP_562698.1 1970507 D 318161 CDS YP_562699.1 91793048 4018168 1985194..1986858 1 NC_007954.1 hypothetical protein 1986858 4018168 Sden_1692 Shewanella denitrificans OS217 hypothetical protein YP_562699.1 1985194 D 318161 CDS YP_562700.1 91793049 4018169 1987847..1989589 1 NC_007954.1 hypothetical protein 1989589 4018169 Sden_1693 Shewanella denitrificans OS217 hypothetical protein YP_562700.1 1987847 D 318161 CDS YP_562701.1 91793050 4018170 1990430..1991983 1 NC_007954.1 hypothetical protein 1991983 4018170 Sden_1694 Shewanella denitrificans OS217 hypothetical protein YP_562701.1 1990430 D 318161 CDS YP_562702.1 91793051 4018171 1992144..1993340 1 NC_007954.1 hypothetical protein 1993340 4018171 Sden_1695 Shewanella denitrificans OS217 hypothetical protein YP_562702.1 1992144 D 318161 CDS YP_562703.1 91793052 4018172 1993490..1993972 1 NC_007954.1 hypothetical protein 1993972 4018172 Sden_1696 Shewanella denitrificans OS217 hypothetical protein YP_562703.1 1993490 D 318161 CDS YP_562704.1 91793053 4018173 1993969..1994787 1 NC_007954.1 N-acetylmuramoyl-L-alanine amidase 1994787 4018173 Sden_1697 Shewanella denitrificans OS217 N-acetylmuramoyl-L-alanine amidase YP_562704.1 1993969 D 318161 CDS YP_562705.1 91793054 4018174 1994850..1996214 1 NC_007954.1 cell division protein FtsZ 1996214 4018174 Sden_1698 Shewanella denitrificans OS217 cell division protein FtsZ YP_562705.1 1994850 D 318161 CDS YP_562706.1 91793055 4018175 complement(1996246..2000436) 1 NC_007954.1 ATP-binding region, ATPase-like protein 2000436 4018175 Sden_1699 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562706.1 1996246 R 318161 CDS YP_562707.1 91793056 4018176 complement(2000490..2000729) 1 NC_007954.1 hypothetical protein 2000729 4018176 Sden_1700 Shewanella denitrificans OS217 hypothetical protein YP_562707.1 2000490 R 318161 CDS YP_562708.1 91793057 4018177 complement(2000846..2002483) 1 NC_007954.1 hypothetical protein 2002483 4018177 Sden_1701 Shewanella denitrificans OS217 hypothetical protein YP_562708.1 2000846 R 318161 CDS YP_562709.1 91793058 4018180 complement(2004366..2005727) 1 NC_007954.1 MATE efflux family protein 2005727 4018180 Sden_1702 Shewanella denitrificans OS217 MATE efflux family protein YP_562709.1 2004366 R 318161 CDS YP_562710.1 91793059 4018181 2005757..2006371 1 NC_007954.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2006371 4018181 Sden_1703 Shewanella denitrificans OS217 riboflavin synthase subunit alpha YP_562710.1 2005757 D 318161 CDS YP_562711.1 91793060 4018182 complement(2006451..2006669) 1 NC_007954.1 hypothetical protein 2006669 4018182 Sden_1704 Shewanella denitrificans OS217 hypothetical protein YP_562711.1 2006451 R 318161 CDS YP_562712.1 91793061 4018183 2006960..2008888 1 NC_007954.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2008888 4018183 Sden_1705 Shewanella denitrificans OS217 threonyl-tRNA synthetase YP_562712.1 2006960 D 318161 CDS YP_562713.1 91793062 4018184 2009048..2009434 1 NC_007954.1 initiation factor 3 2009434 4018184 Sden_1706 Shewanella denitrificans OS217 initiation factor 3 YP_562713.1 2009048 D 318161 CDS YP_562714.2 162210775 4018185 2009519..2009713 1 NC_007954.1 50S ribosomal protein L35 2009713 rpmI 4018185 rpmI Shewanella denitrificans OS217 50S ribosomal protein L35 YP_562714.2 2009519 D 318161 CDS YP_562715.1 91793064 4018186 2009732..2010088 1 NC_007954.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2010088 rplT 4018186 rplT Shewanella denitrificans OS217 50S ribosomal protein L20 YP_562715.1 2009732 D 318161 CDS YP_562716.1 91793065 4018187 2010240..2011349 1 NC_007954.1 NADH:flavin oxidoreductase/NADH oxidase 2011349 4018187 Sden_1709 Shewanella denitrificans OS217 NADH:flavin oxidoreductase/NADH oxidase YP_562716.1 2010240 D 318161 CDS YP_562717.1 91793066 4018188 complement(2011506..2014688) 1 NC_007954.1 acriflavin resistance protein 2014688 4018188 Sden_1710 Shewanella denitrificans OS217 acriflavin resistance protein YP_562717.1 2011506 R 318161 CDS YP_562718.1 91793067 4018189 complement(2014691..2015899) 1 NC_007954.1 secretion protein HlyD 2015899 4018189 Sden_1711 Shewanella denitrificans OS217 secretion protein HlyD YP_562718.1 2014691 R 318161 CDS YP_562719.1 91793068 4018190 2016052..2016615 1 NC_007954.1 GCN5-related N-acetyltransferase 2016615 4018190 Sden_1712 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562719.1 2016052 D 318161 CDS YP_562720.1 91793069 4018191 complement(2016731..2017684) 1 NC_007954.1 thioredoxin reductase 2017684 4018191 Sden_1713 Shewanella denitrificans OS217 thioredoxin reductase YP_562720.1 2016731 R 318161 CDS YP_562721.1 91793070 4018192 complement(2017930..2018799) 1 NC_007954.1 AraC-type transcriptional regulator-like protein 2018799 4018192 Sden_1714 Shewanella denitrificans OS217 AraC-type transcriptional regulator-like protein YP_562721.1 2017930 R 318161 CDS YP_562722.1 91793071 4018193 2019031..2020200 1 NC_007954.1 iron-containing alcohol dehydrogenase 2020200 4018193 Sden_1715 Shewanella denitrificans OS217 iron-containing alcohol dehydrogenase YP_562722.1 2019031 D 318161 CDS YP_562723.1 91793072 4018194 complement(2020283..2022934) 1 NC_007954.1 hypothetical protein 2022934 4018194 Sden_1716 Shewanella denitrificans OS217 hypothetical protein YP_562723.1 2020283 R 318161 CDS YP_562724.1 91793073 4018195 complement(2022921..2023562) 1 NC_007954.1 paraquat-inducible protein A 2023562 4018195 Sden_1717 Shewanella denitrificans OS217 paraquat-inducible protein A YP_562724.1 2022921 R 318161 CDS YP_562725.1 91793074 4018196 complement(2023552..2024181) 1 NC_007954.1 paraquat-inducible protein A 2024181 4018196 Sden_1718 Shewanella denitrificans OS217 paraquat-inducible protein A YP_562725.1 2023552 R 318161 CDS YP_562726.1 91793075 4018197 2024430..2024729 1 NC_007954.1 YebG 2024729 4018197 Sden_1719 Shewanella denitrificans OS217 YebG YP_562726.1 2024430 D 318161 CDS YP_562727.1 91793076 4018198 2024769..2025227 1 NC_007954.1 GAF domain-containing protein 2025227 4018198 Sden_1720 Shewanella denitrificans OS217 GAF domain-containing protein YP_562727.1 2024769 D 318161 CDS YP_562728.1 91793077 4018199 2025433..2026119 1 NC_007954.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 2026119 4018199 Sden_1721 Shewanella denitrificans OS217 solute/DNA competence effector YP_562728.1 2025433 D 318161 CDS YP_562729.1 91793078 4018200 2026144..2028195 1 NC_007954.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2028195 4018200 Sden_1722 Shewanella denitrificans OS217 carboxy-terminal protease YP_562729.1 2026144 D 318161 CDS YP_562730.1 91793079 4018201 2028411..2030969 1 NC_007954.1 aminopeptidase N 2030969 pepN 4018201 pepN Shewanella denitrificans OS217 aminopeptidase N YP_562730.1 2028411 D 318161 CDS YP_562731.1 91793080 4018202 2031134..2031349 1 NC_007954.1 hypothetical protein 2031349 4018202 Sden_1724 Shewanella denitrificans OS217 hypothetical protein YP_562731.1 2031134 D 318161 CDS YP_562732.1 91793081 4018203 2031680..2033728 1 NC_007954.1 hypothetical protein 2033728 4018203 Sden_1725 Shewanella denitrificans OS217 hypothetical protein YP_562732.1 2031680 D 318161 CDS YP_562733.1 91793082 4018204 2033740..2035104 1 NC_007954.1 hypothetical protein 2035104 4018204 Sden_1726 Shewanella denitrificans OS217 hypothetical protein YP_562733.1 2033740 D 318161 CDS YP_562734.1 91793083 4018205 2035162..2036169 1 NC_007954.1 BNR repeat-containing protein 2036169 4018205 Sden_1727 Shewanella denitrificans OS217 BNR repeat-containing protein YP_562734.1 2035162 D 318161 CDS YP_562735.1 91793084 4018206 2036218..2038527 1 NC_007954.1 hypothetical protein 2038527 4018206 Sden_1728 Shewanella denitrificans OS217 hypothetical protein YP_562735.1 2036218 D 318161 CDS YP_562736.1 91793085 4018207 2038819..2043663 1 NC_007954.1 NAD-glutamate dehydrogenase 2043663 4018207 Sden_1729 Shewanella denitrificans OS217 NAD-glutamate dehydrogenase YP_562736.1 2038819 D 318161 CDS YP_562737.1 91793086 4018208 2043725..2044744 1 NC_007954.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2044744 4018208 Sden_1730 Shewanella denitrificans OS217 dihydroorotate dehydrogenase 2 YP_562737.1 2043725 D 318161 CDS YP_562738.1 91793087 4018209 2044910..2045443 1 NC_007954.1 hypothetical protein 2045443 4018209 Sden_1731 Shewanella denitrificans OS217 hypothetical protein YP_562738.1 2044910 D 318161 CDS YP_562739.1 91793088 4018210 2046128..2048236 1 NC_007954.1 sodium/hydrogen exchanger 2048236 4018210 Sden_1732 Shewanella denitrificans OS217 sodium/hydrogen exchanger YP_562739.1 2046128 D 318161 CDS YP_562740.1 91793089 4018211 complement(2048381..2048845) 1 NC_007954.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2048845 bcp 4018211 bcp Shewanella denitrificans OS217 thioredoxin-dependent thiol peroxidase YP_562740.1 2048381 R 318161 CDS YP_562741.1 91793090 4018212 complement(2048854..2049390) 1 NC_007954.1 glycine cleavage system transcriptional repressor 2049390 4018212 Sden_1734 Shewanella denitrificans OS217 glycine cleavage system transcriptional repressor YP_562741.1 2048854 R 318161 CDS YP_562742.1 91793091 4018213 2049549..2050430 1 NC_007954.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2050430 4018213 Sden_1735 Shewanella denitrificans OS217 dihydrodipicolinate synthase YP_562742.1 2049549 D 318161 CDS YP_562743.1 91793092 4018214 2050437..2051555 1 NC_007954.1 NlpBDapX lipoprotein 2051555 4018214 Sden_1736 Shewanella denitrificans OS217 NlpBDapX lipoprotein YP_562743.1 2050437 D 318161 CDS YP_562744.1 91793093 4018215 2051771..2052853 1 NC_007954.1 secretion protein HlyD 2052853 4018215 Sden_1737 Shewanella denitrificans OS217 secretion protein HlyD YP_562744.1 2051771 D 318161 CDS YP_562745.1 91793094 4018216 2052850..2055945 1 NC_007954.1 acriflavin resistance protein 2055945 4018216 Sden_1738 Shewanella denitrificans OS217 acriflavin resistance protein YP_562745.1 2052850 D 318161 CDS YP_562746.1 91793095 4018217 2056154..2057368 1 NC_007954.1 Fmu (Sun) 2057368 4018217 Sden_1739 Shewanella denitrificans OS217 Fmu (Sun) YP_562746.1 2056154 D 318161 CDS YP_562747.1 91793096 4018218 2057577..2059868 1 NC_007954.1 GGDEF domain-containing protein 2059868 4018218 Sden_1740 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562747.1 2057577 D 318161 CDS YP_562748.1 91793097 4018219 complement(2059989..2061104) 1 NC_007954.1 alanine dehydrogenase 2061104 4018219 Sden_1741 Shewanella denitrificans OS217 alanine dehydrogenase YP_562748.1 2059989 R 318161 CDS YP_562749.1 91793098 4018220 2061290..2061790 1 NC_007954.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2061790 4018220 Sden_1742 Shewanella denitrificans OS217 leucine-responsive transcriptional regulator YP_562749.1 2061290 D 318161 CDS YP_562750.1 91793099 4018221 2061947..2064745 1 NC_007954.1 cell divisionFtsK/SpoIIIE 2064745 4018221 Sden_1743 Shewanella denitrificans OS217 cell divisionFtsK/SpoIIIE YP_562750.1 2061947 D 318161 CDS YP_562751.1 91793100 4018222 2064754..2065410 1 NC_007954.1 outer membrane lipoprotein carrier protein LolA 2065410 4018222 Sden_1744 Shewanella denitrificans OS217 outer membrane lipoprotein carrier protein LolA YP_562751.1 2064754 D 318161 CDS YP_562752.1 91793101 4018223 2065438..2066769 1 NC_007954.1 recombination factor protein RarA 2066769 4018223 Sden_1745 Shewanella denitrificans OS217 recombination factor protein RarA YP_562752.1 2065438 D 318161 CDS YP_562753.1 91793102 4018224 2066762..2067136 1 NC_007954.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2067136 4018224 Sden_1746 Shewanella denitrificans OS217 camphor resistance protein CrcB YP_562753.1 2066762 D 318161 CDS YP_562754.1 91793103 4018225 2067155..2068441 1 NC_007954.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2068441 4018225 Sden_1747 Shewanella denitrificans OS217 seryl-tRNA synthetase YP_562754.1 2067155 D 318161 CDS YP_562755.1 91793104 4018226 2069128..2070057 1 NC_007954.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 2070057 4018226 Sden_1748 Shewanella denitrificans OS217 23S rRNA pseudouridine synthase F YP_562755.1 2069128 D 318161 CDS YP_562756.1 91793105 4018227 2070191..2070775 1 NC_007954.1 hypothetical protein 2070775 4018227 Sden_1749 Shewanella denitrificans OS217 hypothetical protein YP_562756.1 2070191 D 318161 CDS YP_562757.1 91793106 4018228 complement(2070918..2072108) 1 NC_007954.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2072108 4018228 Sden_1750 Shewanella denitrificans OS217 aromatic amino acid aminotransferase YP_562757.1 2070918 R 318161 CDS YP_562758.1 91793107 4018229 2072489..2073775 1 NC_007954.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2073775 4018229 Sden_1751 Shewanella denitrificans OS217 3-phosphoshikimate 1-carboxyvinyltransferase YP_562758.1 2072489 D 318161 CDS YP_562759.1 91793108 4018230 2074020..2074703 1 NC_007954.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2074703 cmk 4018230 cmk Shewanella denitrificans OS217 cytidylate kinase YP_562759.1 2074020 D 318161 CDS YP_562760.2 162210774 4018231 2074817..2076484 1 NC_007954.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2076484 rpsA 4018231 rpsA Shewanella denitrificans OS217 30S ribosomal protein S1 YP_562760.2 2074817 D 318161 CDS YP_562761.1 91793110 4018232 2076562..2076849 1 NC_007954.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2076849 ihfB 4018232 ihfB Shewanella denitrificans OS217 integration host factor subunit beta YP_562761.1 2076562 D 318161 CDS YP_562762.1 91793111 4018233 2076979..2077260 1 NC_007954.1 hypothetical protein 2077260 4018233 Sden_1755 Shewanella denitrificans OS217 hypothetical protein YP_562762.1 2076979 D 318161 CDS YP_562763.1 91793112 4018234 2077261..2078421 1 NC_007954.1 tetratricopeptide repeat protein 2078421 4018234 Sden_1756 Shewanella denitrificans OS217 tetratricopeptide repeat protein YP_562763.1 2077261 D 318161 CDS YP_562764.1 91793113 4018235 2078501..2079196 1 NC_007954.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2079196 4018235 Sden_1757 Shewanella denitrificans OS217 orotidine 5'-phosphate decarboxylase YP_562764.1 2078501 D 318161 CDS YP_562765.1 91793114 4018236 2079247..2080059 1 NC_007954.1 short chain dehydrogenase 2080059 4018236 Sden_1758 Shewanella denitrificans OS217 short chain dehydrogenase YP_562765.1 2079247 D 318161 CDS YP_562766.1 91793115 4018237 2080095..2080646 1 NC_007954.1 hypothetical protein 2080646 4018237 Sden_1759 Shewanella denitrificans OS217 hypothetical protein YP_562766.1 2080095 D 318161 CDS YP_562767.1 91793116 4018238 2080695..2081597 1 NC_007954.1 methyltransferase type 11 2081597 4018238 Sden_1760 Shewanella denitrificans OS217 methyltransferase type 11 YP_562767.1 2080695 D 318161 CDS YP_562768.1 91793117 4018239 2081797..2083548 1 NC_007954.1 acyl-CoA dehydrogenase-like protein 2083548 4018239 Sden_1761 Shewanella denitrificans OS217 acyl-CoA dehydrogenase-like protein YP_562768.1 2081797 D 318161 CDS YP_562769.1 91793118 4018240 complement(2083619..2083906) 1 NC_007954.1 YCII-related 2083906 4018240 Sden_1762 Shewanella denitrificans OS217 YCII-related YP_562769.1 2083619 R 318161 CDS YP_562770.1 91793119 4018241 2083996..2084337 1 NC_007954.1 helix-turn-helix, HxlR type 2084337 4018241 Sden_1763 Shewanella denitrificans OS217 helix-turn-helix, HxlR type YP_562770.1 2083996 D 318161 CDS YP_562771.1 91793120 4018242 complement(2084415..2086862) 1 NC_007954.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2086862 fadE 4018242 fadE Shewanella denitrificans OS217 acyl-CoA dehydrogenase YP_562771.1 2084415 R 318161 CDS YP_562772.1 91793121 4018243 2087111..2087887 1 NC_007954.1 glutamine amidotransferase, class-II 2087887 4018243 Sden_1765 Shewanella denitrificans OS217 glutamine amidotransferase, class-II YP_562772.1 2087111 D 318161 CDS YP_562773.1 91793122 4018244 complement(2088017..2088892) 1 NC_007954.1 hypothetical protein 2088892 4018244 Sden_1766 Shewanella denitrificans OS217 hypothetical protein YP_562773.1 2088017 R 318161 CDS YP_562774.1 91793123 4018245 complement(2088965..2089339) 1 NC_007954.1 methylated-DNA-(protein)-cysteine S-methyltransferase 2089339 4018245 Sden_1767 Shewanella denitrificans OS217 methylated-DNA-(protein)-cysteine S-methyltransferase YP_562774.1 2088965 R 318161 CDS YP_562775.1 91793124 4018246 complement(2089479..2090186) 1 NC_007954.1 hemolysin III family channel protein 2090186 4018246 Sden_1768 Shewanella denitrificans OS217 hemolysin III family channel protein YP_562775.1 2089479 R 318161 CDS YP_562776.1 91793125 4018247 2090575..2091486 1 NC_007954.1 hypothetical protein 2091486 4018247 Sden_1769 Shewanella denitrificans OS217 hypothetical protein YP_562776.1 2090575 D 318161 CDS YP_562777.1 91793126 4018249 2092233..2094293 1 NC_007954.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2094293 4018249 Sden_1770 Shewanella denitrificans OS217 thiamine biosynthesis protein ThiC YP_562777.1 2092233 D 318161 CDS YP_562778.1 91793127 4018250 2094296..2096137 1 NC_007954.1 thiamine-phosphate pyrophosphorylase 2096137 4018250 Sden_1771 Shewanella denitrificans OS217 thiamine-phosphate pyrophosphorylase YP_562778.1 2094296 D 318161 CDS YP_562779.1 91793128 4018251 2096127..2097035 1 NC_007954.1 UBA/THIF-type NAD/FAD binding fold 2097035 4018251 Sden_1772 Shewanella denitrificans OS217 UBA/THIF-type NAD/FAD binding fold YP_562779.1 2096127 D 318161 CDS YP_562780.1 91793129 4018252 2097053..2097271 1 NC_007954.1 thiamine biosynthesis protein ThiS 2097271 4018252 Sden_1773 Shewanella denitrificans OS217 thiamine biosynthesis protein ThiS YP_562780.1 2097053 D 318161 CDS YP_562781.1 91793130 4018253 2097274..2098074 1 NC_007954.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2098074 thiG 4018253 thiG Shewanella denitrificans OS217 thiazole synthase YP_562781.1 2097274 D 318161 CDS YP_562782.1 91793131 4018254 2098071..2099180 1 NC_007954.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2099180 thiH 4018254 thiH Shewanella denitrificans OS217 thiamine biosynthesis protein ThiH YP_562782.1 2098071 D 318161 CDS YP_562783.1 91793132 4018255 2099324..2099608 1 NC_007954.1 methyl-accepting chemotaxis protein 2099608 4018255 Sden_1776 Shewanella denitrificans OS217 methyl-accepting chemotaxis protein YP_562783.1 2099324 D 318161 CDS YP_562784.1 91793133 4018256 2099611..2101014 1 NC_007954.1 SrpA-related protein 2101014 4018256 Sden_1777 Shewanella denitrificans OS217 SrpA-related protein YP_562784.1 2099611 D 318161 CDS YP_562785.1 91793134 4018257 complement(2101119..2102801) 1 NC_007954.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2102801 4018257 Sden_1778 Shewanella denitrificans OS217 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_562785.1 2101119 R 318161 CDS YP_562786.1 91793135 4018258 2103195..2104508 1 NC_007954.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2104508 pssA 4018258 pssA Shewanella denitrificans OS217 phosphatidylserine synthase YP_562786.1 2103195 D 318161 CDS YP_562787.1 91793136 4018259 2104508..2105380 1 NC_007954.1 hypothetical protein 2105380 4018259 Sden_1780 Shewanella denitrificans OS217 hypothetical protein YP_562787.1 2104508 D 318161 CDS YP_562788.1 91793137 4018260 2105540..2105884 1 NC_007954.1 orphan protein 2105884 4018260 Sden_1781 Shewanella denitrificans OS217 orphan protein YP_562788.1 2105540 D 318161 CDS YP_562789.1 91793138 4018261 2105964..2107904 1 NC_007954.1 ATP-dependent DNA helicase RecQ 2107904 4018261 Sden_1782 Shewanella denitrificans OS217 ATP-dependent DNA helicase RecQ YP_562789.1 2105964 D 318161 CDS YP_562790.1 91793139 4018262 2107915..2108190 1 NC_007954.1 hypothetical protein 2108190 4018262 Sden_1783 Shewanella denitrificans OS217 hypothetical protein YP_562790.1 2107915 D 318161 CDS YP_562791.1 91793140 4018263 complement(2108237..2108716) 1 NC_007954.1 peptide methionine sulfoxide reductase 2108716 4018263 Sden_1784 Shewanella denitrificans OS217 peptide methionine sulfoxide reductase YP_562791.1 2108237 R 318161 CDS YP_562792.1 91793141 4018264 2108983..2110029 1 NC_007954.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2110029 4018264 Sden_1785 Shewanella denitrificans OS217 succinylglutamate desuccinylase YP_562792.1 2108983 D 318161 CDS YP_562793.1 91793142 4018265 2110183..2111361 1 NC_007954.1 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) 2111361 4018265 Sden_1786 Shewanella denitrificans OS217 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) YP_562793.1 2110183 D 318161 CDS YP_562794.1 91793143 4018266 2111365..2112342 1 NC_007954.1 transketolase, central region 2112342 4018266 Sden_1787 Shewanella denitrificans OS217 transketolase, central region YP_562794.1 2111365 D 318161 CDS YP_562795.1 91793144 4018267 2112352..2113977 1 NC_007954.1 dihydrolipoamide acetyltransferase 2113977 4018267 Sden_1788 Shewanella denitrificans OS217 dihydrolipoamide acetyltransferase YP_562795.1 2112352 D 318161 CDS YP_562796.1 91793145 4018268 2114100..2115167 1 NC_007954.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2115167 4018268 Sden_1789 Shewanella denitrificans OS217 quinolinate synthetase YP_562796.1 2114100 D 318161 CDS YP_562797.1 91793146 4018269 2115434..2115715 1 NC_007954.1 lipoprotein 2115715 4018269 Sden_1790 Shewanella denitrificans OS217 lipoprotein YP_562797.1 2115434 D 318161 CDS YP_562798.1 91793147 4018270 complement(2115813..2116823) 1 NC_007954.1 glyceraldehyde-3-phosphate dehydrogenase, type I 2116823 4018270 Sden_1791 Shewanella denitrificans OS217 glyceraldehyde-3-phosphate dehydrogenase, type I YP_562798.1 2115813 R 318161 CDS YP_562799.1 91793148 4018271 complement(2117063..2117923) 1 NC_007954.1 hypothetical protein 2117923 4018271 Sden_1792 Shewanella denitrificans OS217 hypothetical protein YP_562799.1 2117063 R 318161 CDS YP_562800.1 91793149 4018272 2118146..2119582 1 NC_007954.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2119582 4018272 Sden_1793 Shewanella denitrificans OS217 glyceraldehyde-3-phosphate dehydrogenase YP_562800.1 2118146 D 318161 CDS YP_562801.1 91793150 4018276 complement(2120353..2121315) 1 NC_007954.1 response regulator receiver 2121315 4018276 Sden_1794 Shewanella denitrificans OS217 response regulator receiver YP_562801.1 2120353 R 318161 CDS YP_562802.1 91793151 4018277 2121486..2122901 1 NC_007954.1 hypothetical protein 2122901 4018277 Sden_1795 Shewanella denitrificans OS217 hypothetical protein YP_562802.1 2121486 D 318161 CDS YP_562803.1 91793152 4018278 2122898..2123119 1 NC_007954.1 hypothetical protein 2123119 4018278 Sden_1796 Shewanella denitrificans OS217 hypothetical protein YP_562803.1 2122898 D 318161 CDS YP_562804.1 91793153 4018279 2124011..2126041 1 NC_007954.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2126041 4018279 Sden_1797 Shewanella denitrificans OS217 excinuclease ABC subunit B YP_562804.1 2124011 D 318161 CDS YP_562805.1 91793154 4018280 2126099..2126455 1 NC_007954.1 regulatory protein, MerR 2126455 4018280 Sden_1798 Shewanella denitrificans OS217 regulatory protein, MerR YP_562805.1 2126099 D 318161 CDS YP_562806.1 91793155 4018281 2126555..2127133 1 NC_007954.1 NAD(P)H dehydrogenase (quinone) 2127133 4018281 Sden_1799 Shewanella denitrificans OS217 NAD(P)H dehydrogenase (quinone) YP_562806.1 2126555 D 318161 CDS YP_562807.1 91793156 4018282 2127391..2129274 1 NC_007954.1 alpha amylase, catalytic region 2129274 4018282 Sden_1800 Shewanella denitrificans OS217 alpha amylase, catalytic region YP_562807.1 2127391 D 318161 CDS YP_562808.1 91793157 4018283 2129918..2130253 1 NC_007954.1 hypothetical protein 2130253 4018283 Sden_1801 Shewanella denitrificans OS217 hypothetical protein YP_562808.1 2129918 D 318161 CDS YP_562809.1 91793158 4018284 2130328..2131623 1 NC_007954.1 hypothetical protein 2131623 4018284 Sden_1802 Shewanella denitrificans OS217 hypothetical protein YP_562809.1 2130328 D 318161 CDS YP_562810.1 91793159 4018285 2132245..2132529 1 NC_007954.1 hypothetical protein 2132529 4018285 Sden_1803 Shewanella denitrificans OS217 hypothetical protein YP_562810.1 2132245 D 318161 CDS YP_562811.1 91793160 4018286 2132787..2133119 1 NC_007954.1 YCII-related 2133119 4018286 Sden_1804 Shewanella denitrificans OS217 YCII-related YP_562811.1 2132787 D 318161 CDS YP_562812.1 91793161 4018287 complement(2133395..2133733) 1 NC_007954.1 DsrC-like protein 2133733 4018287 Sden_1805 Shewanella denitrificans OS217 DsrC-like protein YP_562812.1 2133395 R 318161 CDS YP_562813.1 91793162 4018288 complement(2133727..2134023) 1 NC_007954.1 DsrH like protein 2134023 4018288 Sden_1806 Shewanella denitrificans OS217 DsrH like protein YP_562813.1 2133727 R 318161 CDS YP_562814.1 91793163 4018289 complement(2134023..2134379) 1 NC_007954.1 DsrE-like protein 2134379 4018289 Sden_1807 Shewanella denitrificans OS217 DsrE-like protein YP_562814.1 2134023 R 318161 CDS YP_562815.1 91793164 4018290 complement(2134439..2134855) 1 NC_007954.1 DsrE-like protein 2134855 4018290 Sden_1808 Shewanella denitrificans OS217 DsrE-like protein YP_562815.1 2134439 R 318161 CDS YP_562816.1 91793165 4018291 complement(2134906..2135565) 1 NC_007954.1 hypothetical protein 2135565 4018291 Sden_1809 Shewanella denitrificans OS217 hypothetical protein YP_562816.1 2134906 R 318161 CDS YP_562817.1 91793166 4018292 complement(2135717..2136619) 1 NC_007954.1 DNA-binding transcriptional regulator 2136619 4018292 Sden_1810 Shewanella denitrificans OS217 DNA-binding transcriptional regulator YP_562817.1 2135717 R 318161 CDS YP_562818.1 91793167 4018294 complement(2137387..2137992) 1 NC_007954.1 carbonate dehydratase 2137992 4018294 Sden_1811 Shewanella denitrificans OS217 carbonate dehydratase YP_562818.1 2137387 R 318161 CDS YP_562819.1 91793168 4018295 complement(2138178..2139071) 1 NC_007954.1 alpha/beta hydrolase fold 2139071 4018295 Sden_1812 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562819.1 2138178 R 318161 CDS YP_562820.1 91793169 4018296 complement(2139092..2139808) 1 NC_007954.1 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2139808 4018296 Sden_1813 Shewanella denitrificans OS217 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_562820.1 2139092 R 318161 CDS YP_562821.1 91793170 4018297 complement(2139802..2140932) 1 NC_007954.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2140932 4018297 Sden_1814 Shewanella denitrificans OS217 succinyl-diaminopimelate desuccinylase YP_562821.1 2139802 R 318161 CDS YP_562822.1 91793171 4018298 complement(2140929..2141279) 1 NC_007954.1 hypothetical protein 2141279 4018298 Sden_1815 Shewanella denitrificans OS217 hypothetical protein YP_562822.1 2140929 R 318161 CDS YP_562823.1 91793172 4018299 complement(2141336..2141845) 1 NC_007954.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 2141845 4018299 Sden_1816 Shewanella denitrificans OS217 PTS system glucose-specific transporter subunit YP_562823.1 2141336 R 318161 CDS YP_562824.1 91793173 4018300 complement(2141902..2143638) 1 NC_007954.1 phosphoenolpyruvate-protein phosphotransferase 2143638 4018300 Sden_1817 Shewanella denitrificans OS217 phosphoenolpyruvate-protein phosphotransferase YP_562824.1 2141902 R 318161 CDS YP_562825.1 91793174 4018301 complement(2143712..2143969) 1 NC_007954.1 phosphotransferase system, HPr 2143969 4018301 Sden_1818 Shewanella denitrificans OS217 phosphotransferase system, HPr YP_562825.1 2143712 R 318161 CDS YP_562826.1 91793175 4018302 2144232..2145023 1 NC_007954.1 hypothetical protein 2145023 4018302 Sden_1819 Shewanella denitrificans OS217 hypothetical protein YP_562826.1 2144232 D 318161 CDS YP_562827.1 91793176 4018303 2145148..2146185 1 NC_007954.1 periplasmic binding protein/LacI transcriptional regulator 2146185 4018303 Sden_1820 Shewanella denitrificans OS217 periplasmic binding protein/LacI transcriptional regulator YP_562827.1 2145148 D 318161 CDS YP_562828.1 91793177 4018304 2146317..2147282 1 NC_007954.1 hypothetical protein 2147282 4018304 Sden_1821 Shewanella denitrificans OS217 hypothetical protein YP_562828.1 2146317 D 318161 CDS YP_562829.1 91793178 4018305 complement(2147305..2147646) 1 NC_007954.1 hypothetical protein 2147646 4018305 Sden_1822 Shewanella denitrificans OS217 hypothetical protein YP_562829.1 2147305 R 318161 CDS YP_562830.1 91793179 4018306 complement(2148009..2149055) 1 NC_007954.1 Glu/Leu/Phe/Val dehydrogenase, dimerisation region 2149055 4018306 Sden_1823 Shewanella denitrificans OS217 Glu/Leu/Phe/Val dehydrogenase, dimerisation region YP_562830.1 2148009 R 318161 CDS YP_562831.1 91793180 4018307 2149289..2149783 1 NC_007954.1 hypothetical protein 2149783 4018307 Sden_1824 Shewanella denitrificans OS217 hypothetical protein YP_562831.1 2149289 D 318161 CDS YP_562832.1 91793181 4018308 complement(2149963..2151093) 1 NC_007954.1 cupin 4 2151093 4018308 Sden_1825 Shewanella denitrificans OS217 cupin 4 YP_562832.1 2149963 R 318161 CDS YP_562833.1 91793182 4018309 complement(2151157..2152527) 1 NC_007954.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2152527 4018309 Sden_1826 Shewanella denitrificans OS217 adenylosuccinate lyase YP_562833.1 2151157 R 318161 CDS YP_562834.1 91793183 4018310 complement(2152569..2153204) 1 NC_007954.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2153204 4018310 Sden_1827 Shewanella denitrificans OS217 hypothetical protein YP_562834.1 2152569 R 318161 CDS YP_562835.1 91793184 4018311 complement(2153208..2154341) 1 NC_007954.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2154341 mnmA 4018311 mnmA Shewanella denitrificans OS217 tRNA-specific 2-thiouridylase MnmA YP_562835.1 2153208 R 318161 CDS YP_562836.1 91793185 4018312 complement(2154776..2155810) 1 NC_007954.1 GGDEF domain-containing protein 2155810 4018312 Sden_1829 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562836.1 2154776 R 318161 CDS YP_562837.1 91793186 4018313 complement(2156080..2156808) 1 NC_007954.1 pseudouridine synthase, Rsu 2156808 4018313 Sden_1830 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_562837.1 2156080 R 318161 CDS YP_562838.1 91793187 4018314 2157091..2159313 1 NC_007954.1 isocitrate dehydrogenase, NADP-dependent 2159313 4018314 Sden_1831 Shewanella denitrificans OS217 isocitrate dehydrogenase, NADP-dependent YP_562838.1 2157091 D 318161 CDS YP_562839.1 91793188 4018315 complement(2159401..2159604) 1 NC_007954.1 CspD, cold shock 2159604 4018315 Sden_1832 Shewanella denitrificans OS217 CspD, cold shock YP_562839.1 2159401 R 318161 CDS YP_562840.1 91793189 4018316 2159798..2160106 1 NC_007954.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2160106 clpS 4018316 clpS Shewanella denitrificans OS217 ATP-dependent Clp protease adaptor protein ClpS YP_562840.1 2159798 D 318161 CDS YP_562841.1 91793190 4018317 2160146..2162407 1 NC_007954.1 ATPase AAA-2 2162407 4018317 Sden_1834 Shewanella denitrificans OS217 ATPase AAA-2 YP_562841.1 2160146 D 318161 CDS YP_562842.1 91793191 4018318 complement(2162580..2162798) 1 NC_007954.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2162798 infA 4018318 infA Shewanella denitrificans OS217 translation initiation factor IF-1 YP_562842.1 2162580 R 318161 CDS YP_562843.1 91793192 4018319 complement(2162895..2163596) 1 NC_007954.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2163596 4018319 Sden_1836 Shewanella denitrificans OS217 arginyl-tRNA-protein transferase YP_562843.1 2162895 R 318161 CDS YP_562844.1 91793193 4018320 complement(2163586..2164287) 1 NC_007954.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2164287 aat 4018320 aat Shewanella denitrificans OS217 leucyl/phenylalanyl-tRNA--protein transferase YP_562844.1 2163586 R 318161 CDS YP_562845.1 91793194 4018321 2164341..2164835 1 NC_007954.1 17 kDa surface antigen 2164835 4018321 Sden_1838 Shewanella denitrificans OS217 17 kDa surface antigen YP_562845.1 2164341 D 318161 CDS YP_562846.1 91793195 4018322 complement(2164910..2166703) 1 NC_007954.1 peptidase M28 2166703 4018322 Sden_1839 Shewanella denitrificans OS217 peptidase M28 YP_562846.1 2164910 R 318161 CDS YP_562847.1 91793196 4018323 complement(2166761..2167507) 1 NC_007954.1 UMP phosphatase 2167507 4018323 Sden_1840 Shewanella denitrificans OS217 UMP phosphatase YP_562847.1 2166761 R 318161 CDS YP_562848.1 91793197 4018324 complement(2167797..2168768) 1 NC_007954.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2168768 4018324 Sden_1841 Shewanella denitrificans OS217 C32 tRNA thiolase YP_562848.1 2167797 R 318161 CDS YP_562849.1 91793198 4018325 complement(2168877..2169806) 1 NC_007954.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2169806 4018325 Sden_1842 Shewanella denitrificans OS217 universal stress protein UspE YP_562849.1 2168877 R 318161 CDS YP_562850.1 91793199 4018326 complement(2169991..2170743) 1 NC_007954.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2170743 4018326 Sden_1843 Shewanella denitrificans OS217 fumarate/nitrate reduction transcriptional regulator YP_562850.1 2169991 R 318161 CDS YP_562851.1 91793200 4018327 complement(2170799..2171491) 1 NC_007954.1 hypothetical protein 2171491 4018327 Sden_1844 Shewanella denitrificans OS217 hypothetical protein YP_562851.1 2170799 R 318161 CDS YP_562852.1 91793201 4018328 complement(2171484..2171753) 1 NC_007954.1 cytochrome oxidase maturation protein, cbb3-type 2171753 4018328 Sden_1845 Shewanella denitrificans OS217 cytochrome oxidase maturation protein, cbb3-type YP_562852.1 2171484 R 318161 CDS YP_562853.1 91793202 4018329 complement(2171750..2174191) 1 NC_007954.1 heavy metal translocating P-type ATPase 2174191 4018329 Sden_1846 Shewanella denitrificans OS217 heavy metal translocating P-type ATPase YP_562853.1 2171750 R 318161 CDS YP_562854.1 91793203 4018330 complement(2174195..2174671) 1 NC_007954.1 hypothetical protein 2174671 4018330 Sden_1847 Shewanella denitrificans OS217 hypothetical protein YP_562854.1 2174195 R 318161 CDS YP_562855.1 91793204 4018331 complement(2174787..2175743) 1 NC_007954.1 cytochrome c oxidase, cbb3-type, subunit III 2175743 4018331 Sden_1848 Shewanella denitrificans OS217 cytochrome c oxidase, cbb3-type, subunit III YP_562855.1 2174787 R 318161 CDS YP_562856.1 91793205 4018332 complement(2175743..2175919) 1 NC_007954.1 Cbb3-type cytochrome oxidase component 2175919 4018332 Sden_1849 Shewanella denitrificans OS217 Cbb3-type cytochrome oxidase component YP_562856.1 2175743 R 318161 CDS YP_562857.1 91793206 4018333 complement(2175930..2176544) 1 NC_007954.1 cytochrome c oxidase, cbb3-type, subunit II 2176544 4018333 Sden_1850 Shewanella denitrificans OS217 cytochrome c oxidase, cbb3-type, subunit II YP_562857.1 2175930 R 318161 CDS YP_562858.1 91793207 4018334 complement(2176556..2177989) 1 NC_007954.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2177989 4018334 Sden_1851 Shewanella denitrificans OS217 cbb3-type cytochrome c oxidase subunit I YP_562858.1 2176556 R 318161 CDS YP_562859.1 91793208 4018335 2178255..2178773 1 NC_007954.1 hypothetical protein 2178773 4018335 Sden_1852 Shewanella denitrificans OS217 hypothetical protein YP_562859.1 2178255 D 318161 CDS YP_562860.1 91793209 4018336 complement(2178837..2180420) 1 NC_007954.1 metal-dependent phosphohydrolase 2180420 4018336 Sden_1853 Shewanella denitrificans OS217 metal-dependent phosphohydrolase YP_562860.1 2178837 R 318161 CDS YP_562861.1 91793210 4018337 2180582..2180923 1 NC_007954.1 hypothetical protein 2180923 4018337 Sden_1854 Shewanella denitrificans OS217 hypothetical protein YP_562861.1 2180582 D 318161 CDS YP_562862.1 91793211 4018338 2181138..2182460 1 NC_007954.1 phage integrase 2182460 4018338 Sden_1855 Shewanella denitrificans OS217 phage integrase YP_562862.1 2181138 D 318161 CDS YP_562863.1 91793212 4018339 complement(2182842..2183864) 1 NC_007954.1 hypothetical protein 2183864 4018339 Sden_1856 Shewanella denitrificans OS217 hypothetical protein YP_562863.1 2182842 R 318161 CDS YP_562864.1 91793213 4018340 complement(2184322..2185779) 1 NC_007954.1 lytic transglycosylase, catalytic 2185779 4018340 Sden_1857 Shewanella denitrificans OS217 lytic transglycosylase, catalytic YP_562864.1 2184322 R 318161 CDS YP_562865.1 91793214 4018342 complement(2186123..2186806) 1 NC_007954.1 hypothetical protein 2186806 4018342 Sden_1859 Shewanella denitrificans OS217 hypothetical protein YP_562865.1 2186123 R 318161 CDS YP_562866.1 91793215 4018343 complement(2186790..2187179) 1 NC_007954.1 hypothetical protein 2187179 4018343 Sden_1860 Shewanella denitrificans OS217 hypothetical protein YP_562866.1 2186790 R 318161 CDS YP_562867.1 91793216 4018344 2187490..2188380 1 NC_007954.1 hypothetical protein 2188380 4018344 Sden_1861 Shewanella denitrificans OS217 hypothetical protein YP_562867.1 2187490 D 318161 CDS YP_562868.1 91793217 4018350 2189433..2191328 1 NC_007954.1 GGDEF domain-containing protein 2191328 4018350 Sden_1862 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562868.1 2189433 D 318161 CDS YP_562869.1 91793218 4018351 2191512..2192090 1 NC_007954.1 Na(+)-translocating NADH-quinone reductase subunit E 2192090 4018351 Sden_1863 Shewanella denitrificans OS217 Na(+)-translocating NADH-quinone reductase subunit E YP_562869.1 2191512 D 318161 CDS YP_562870.1 91793219 4018352 2192092..2192709 1 NC_007954.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2192709 4018352 Sden_1864 Shewanella denitrificans OS217 electron transport complex protein RnfB YP_562870.1 2192092 D 318161 CDS YP_562871.1 91793220 4018353 2192703..2194898 1 NC_007954.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2194898 4018353 Sden_1865 Shewanella denitrificans OS217 electron transport complex protein RnfC YP_562871.1 2192703 D 318161 CDS YP_562872.1 91793221 4018354 2194902..2195954 1 NC_007954.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2195954 rnfD 4018354 rnfD Shewanella denitrificans OS217 electron transport complex protein RnfD YP_562872.1 2194902 D 318161 CDS YP_562873.1 91793222 4018355 2195954..2196607 1 NC_007954.1 electron transport complex, RnfABCDGE type, G subunit 2196607 4018355 Sden_1867 Shewanella denitrificans OS217 electron transport complex, RnfABCDGE type, G subunit YP_562873.1 2195954 D 318161 CDS YP_562874.1 91793223 4018356 2196604..2197299 1 NC_007954.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2197299 4018356 Sden_1868 Shewanella denitrificans OS217 electron transport complex RsxE subunit YP_562874.1 2196604 D 318161 CDS YP_562875.1 91793224 4018357 2197307..2197939 1 NC_007954.1 endonuclease III 2197939 4018357 Sden_1869 Shewanella denitrificans OS217 endonuclease III YP_562875.1 2197307 D 318161 CDS YP_562876.1 91793225 4018358 complement(2198007..2198684) 1 NC_007954.1 hypothetical protein 2198684 4018358 Sden_1870 Shewanella denitrificans OS217 hypothetical protein YP_562876.1 2198007 R 318161 CDS YP_562877.1 91793226 4018359 2198858..2199091 1 NC_007954.1 Iron-sulfur cluster loop 2199091 4018359 Sden_1871 Shewanella denitrificans OS217 Iron-sulfur cluster loop YP_562877.1 2198858 D 318161 CDS YP_562878.1 91793227 4018360 complement(2199200..2199445) 1 NC_007954.1 hypothetical protein 2199445 4018360 Sden_1872 Shewanella denitrificans OS217 hypothetical protein YP_562878.1 2199200 R 318161 CDS YP_562879.1 91793228 4018361 2199504..2199914 1 NC_007954.1 glyoxalase I 2199914 4018361 Sden_1873 Shewanella denitrificans OS217 glyoxalase I YP_562879.1 2199504 D 318161 CDS YP_562880.1 91793229 4018362 complement(2199950..2200459) 1 NC_007954.1 GCN5-related N-acetyltransferase 2200459 4018362 Sden_1874 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562880.1 2199950 R 318161 CDS YP_562881.1 91793230 4018363 2200598..2201572 1 NC_007954.1 regulatory protein, LysR 2201572 4018363 Sden_1875 Shewanella denitrificans OS217 regulatory protein, LysR YP_562881.1 2200598 D 318161 CDS YP_562882.1 91793231 4018364 complement(2201637..2202317) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 2202317 4018364 Sden_1876 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_562882.1 2201637 R 318161 CDS YP_562883.1 91793232 4018365 2202450..2205149 1 NC_007954.1 GCN5-related N-acetyltransferase 2205149 4018365 Sden_1877 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_562883.1 2202450 D 318161 CDS YP_562884.1 91793233 4018366 complement(2205174..2206193) 1 NC_007954.1 GGDEF domain-containing protein 2206193 4018366 Sden_1878 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562884.1 2205174 R 318161 CDS YP_562885.1 91793234 4018367 complement(2206400..2207341) 1 NC_007954.1 integrase catalytic subunit 2207341 4018367 Sden_1879 Shewanella denitrificans OS217 integrase catalytic subunit YP_562885.1 2206400 R 318161 CDS YP_562886.1 91793235 4018368 2207520..2208212 1 NC_007954.1 hypothetical protein 2208212 4018368 Sden_1880 Shewanella denitrificans OS217 hypothetical protein YP_562886.1 2207520 D 318161 CDS YP_562887.1 91793236 4018369 complement(2208233..2208745) 1 NC_007954.1 hypothetical protein 2208745 4018369 Sden_1881 Shewanella denitrificans OS217 hypothetical protein YP_562887.1 2208233 R 318161 CDS YP_562888.1 91793237 4018370 complement(2209185..2210036) 1 NC_007954.1 hypothetical protein 2210036 4018370 Sden_1882 Shewanella denitrificans OS217 hypothetical protein YP_562888.1 2209185 R 318161 CDS YP_562889.1 91793238 4018371 complement(2210739..2211752) 1 NC_007954.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2211752 ruvB 4018371 ruvB Shewanella denitrificans OS217 Holliday junction DNA helicase RuvB YP_562889.1 2210739 R 318161 CDS YP_562890.1 91793239 4018372 complement(2211863..2212474) 1 NC_007954.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2212474 ruvA 4018372 ruvA Shewanella denitrificans OS217 Holliday junction DNA helicase RuvA YP_562890.1 2211863 R 318161 CDS YP_562891.1 91793240 4018373 complement(2212471..2212992) 1 NC_007954.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2212992 ruvC 4018373 ruvC Shewanella denitrificans OS217 Holliday junction resolvase YP_562891.1 2212471 R 318161 CDS YP_562892.1 91793241 4018374 complement(2212992..2213738) 1 NC_007954.1 hypothetical protein 2213738 4018374 Sden_1886 Shewanella denitrificans OS217 hypothetical protein YP_562892.1 2212992 R 318161 CDS YP_562893.1 91793242 4018375 complement(2213833..2215614) 1 NC_007954.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2215614 aspS 4018375 aspS Shewanella denitrificans OS217 aspartyl-tRNA synthetase YP_562893.1 2213833 R 318161 CDS YP_562894.1 91793243 4018376 complement(2215834..2218626) 1 NC_007954.1 GGDEF domain-containing protein 2218626 4018376 Sden_1888 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_562894.1 2215834 R 318161 CDS YP_562895.1 91793244 4018377 2218886..2219620 1 NC_007954.1 methyltransferase 2219620 4018377 Sden_1889 Shewanella denitrificans OS217 methyltransferase YP_562895.1 2218886 D 318161 CDS YP_562896.1 91793245 4018378 2219617..2220609 1 NC_007954.1 methyltransferase 2220609 4018378 Sden_1890 Shewanella denitrificans OS217 methyltransferase YP_562896.1 2219617 D 318161 CDS YP_562897.1 91793246 4018379 2220633..2221406 1 NC_007954.1 hypothetical protein 2221406 4018379 Sden_1891 Shewanella denitrificans OS217 hypothetical protein YP_562897.1 2220633 D 318161 CDS YP_562898.1 91793247 4018380 2221415..2222923 1 NC_007954.1 gonadoliberin III-related protein 2222923 4018380 Sden_1892 Shewanella denitrificans OS217 gonadoliberin III-related protein YP_562898.1 2221415 D 318161 CDS YP_562899.1 91793248 4018381 2222923..2223879 1 NC_007954.1 Alpha-L-glutamate ligase-related protein 2223879 4018381 Sden_1893 Shewanella denitrificans OS217 Alpha-L-glutamate ligase-related protein YP_562899.1 2222923 D 318161 CDS YP_562900.1 91793249 4018382 2223890..2225641 1 NC_007954.1 hypothetical protein 2225641 4018382 Sden_1894 Shewanella denitrificans OS217 hypothetical protein YP_562900.1 2223890 D 318161 CDS YP_562901.1 91793250 4018383 2225736..2226734 1 NC_007954.1 hypothetical protein 2226734 4018383 Sden_1895 Shewanella denitrificans OS217 hypothetical protein YP_562901.1 2225736 D 318161 CDS YP_562902.1 91793251 4018384 complement(2226869..2227354) 1 NC_007954.1 hypothetical protein 2227354 4018384 Sden_1896 Shewanella denitrificans OS217 hypothetical protein YP_562902.1 2226869 R 318161 CDS YP_562903.1 91793252 4018385 complement(2227469..2228959) 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 2228959 4018385 Sden_1897 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_562903.1 2227469 R 318161 CDS YP_562904.1 91793253 4018386 complement(2228949..2229659) 1 NC_007954.1 ABC transporter related 2229659 4018386 Sden_1898 Shewanella denitrificans OS217 ABC transporter related YP_562904.1 2228949 R 318161 CDS YP_562905.1 91793254 4018387 complement(2229659..2230513) 1 NC_007954.1 phosphonate-binding periplasmic protein 2230513 4018387 Sden_1899 Shewanella denitrificans OS217 phosphonate-binding periplasmic protein YP_562905.1 2229659 R 318161 CDS YP_562906.1 91793255 4018388 complement(2230843..2232858) 1 NC_007954.1 NADH:flavin oxidoreductase/NADH oxidase 2232858 4018388 Sden_1900 Shewanella denitrificans OS217 NADH:flavin oxidoreductase/NADH oxidase YP_562906.1 2230843 R 318161 CDS YP_562907.1 91793256 4018389 2233023..2234864 1 NC_007954.1 signal peptide peptidase SppA, 67K type 2234864 4018389 Sden_1901 Shewanella denitrificans OS217 signal peptide peptidase SppA, 67K type YP_562907.1 2233023 D 318161 CDS YP_562908.1 91793257 4018390 2234978..2236006 1 NC_007954.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 2236006 ansA 4018390 ansA Shewanella denitrificans OS217 cytoplasmic asparaginase I YP_562908.1 2234978 D 318161 CDS YP_562909.1 91793258 4018391 complement(2236091..2236372) 1 NC_007954.1 hypothetical protein 2236372 4018391 Sden_1903 Shewanella denitrificans OS217 hypothetical protein YP_562909.1 2236091 R 318161 CDS YP_562910.1 91793259 4018392 complement(2236369..2236686) 1 NC_007954.1 hypothetical protein 2236686 4018392 Sden_1904 Shewanella denitrificans OS217 hypothetical protein YP_562910.1 2236369 R 318161 CDS YP_562911.1 91793260 4018393 complement(2236689..2237819) 1 NC_007954.1 peptidase M14, carboxypeptidase A 2237819 4018393 Sden_1905 Shewanella denitrificans OS217 peptidase M14, carboxypeptidase A YP_562911.1 2236689 R 318161 CDS YP_562912.1 91793261 4018394 complement(2237943..2238689) 1 NC_007954.1 transcriptional regulatory protein-like protein 2238689 4018394 Sden_1906 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_562912.1 2237943 R 318161 CDS YP_562913.1 91793262 4018395 complement(2238822..2240651) 1 NC_007954.1 hypothetical protein 2240651 4018395 Sden_1907 Shewanella denitrificans OS217 hypothetical protein YP_562913.1 2238822 R 318161 CDS YP_562914.1 91793263 4018396 2240914..2241717 1 NC_007954.1 lipolytic enzyme, G-D-S-L 2241717 4018396 Sden_1908 Shewanella denitrificans OS217 lipolytic enzyme, G-D-S-L YP_562914.1 2240914 D 318161 CDS YP_562915.1 91793264 4018397 complement(2242130..2243017) 1 NC_007954.1 abortive infection protein 2243017 4018397 Sden_1909 Shewanella denitrificans OS217 abortive infection protein YP_562915.1 2242130 R 318161 CDS YP_562916.1 91793265 4018399 complement(2243837..2244460) 1 NC_007954.1 hypothetical protein 2244460 4018399 Sden_1910 Shewanella denitrificans OS217 hypothetical protein YP_562916.1 2243837 R 318161 CDS YP_562917.1 91793266 4018400 complement(2244946..2246997) 1 NC_007954.1 peptidase S9, prolyl oligopeptidase active site region 2246997 4018400 Sden_1911 Shewanella denitrificans OS217 peptidase S9, prolyl oligopeptidase active site region YP_562917.1 2244946 R 318161 CDS YP_562918.1 91793267 4018401 complement(2247175..2248737) 1 NC_007954.1 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 2248737 4018401 Sden_1912 Shewanella denitrificans OS217 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit YP_562918.1 2247175 R 318161 CDS YP_562919.1 91793268 4018402 2248892..2250421 1 NC_007954.1 para-aminobenzoate synthase, component I 2250421 4018402 Sden_1913 Shewanella denitrificans OS217 para-aminobenzoate synthase, component I YP_562919.1 2248892 D 318161 CDS YP_562920.1 91793269 4018403 complement(2250617..2252404) 1 NC_007954.1 hypothetical protein 2252404 4018403 Sden_1914 Shewanella denitrificans OS217 hypothetical protein YP_562920.1 2250617 R 318161 CDS YP_562921.1 91793270 4018404 complement(2252860..2254308) 1 NC_007954.1 hypothetical protein 2254308 4018404 Sden_1915 Shewanella denitrificans OS217 hypothetical protein YP_562921.1 2252860 R 318161 CDS YP_562922.1 91793271 4018405 complement(2254525..2255349) 1 NC_007954.1 cyclic nucleotide-binding 2255349 4018405 Sden_1916 Shewanella denitrificans OS217 cyclic nucleotide-binding YP_562922.1 2254525 R 318161 CDS YP_562923.1 91793272 4018406 complement(2255352..2256263) 1 NC_007954.1 response regulator receiver 2256263 4018406 Sden_1917 Shewanella denitrificans OS217 response regulator receiver YP_562923.1 2255352 R 318161 CDS YP_562924.1 91793273 4018407 complement(2256323..2259130) 1 NC_007954.1 ATP-binding region, ATPase-like protein 2259130 4018407 Sden_1918 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_562924.1 2256323 R 318161 CDS YP_562925.1 91793274 4018408 complement(2259885..2260592) 1 NC_007954.1 hypothetical protein 2260592 4018408 Sden_1919 Shewanella denitrificans OS217 hypothetical protein YP_562925.1 2259885 R 318161 CDS YP_562926.1 91793275 4018409 complement(2260583..2261977) 1 NC_007954.1 hypothetical protein 2261977 4018409 Sden_1920 Shewanella denitrificans OS217 hypothetical protein YP_562926.1 2260583 R 318161 CDS YP_562927.1 91793276 4018410 complement(2262134..2263111) 1 NC_007954.1 hypothetical protein 2263111 4018410 Sden_1921 Shewanella denitrificans OS217 hypothetical protein YP_562927.1 2262134 R 318161 CDS YP_562928.1 91793277 4018411 complement(2263249..2263833) 1 NC_007954.1 hypothetical protein 2263833 4018411 Sden_1922 Shewanella denitrificans OS217 hypothetical protein YP_562928.1 2263249 R 318161 CDS YP_562929.1 91793278 4018412 complement(2263847..2279416) 1 NC_007954.1 peptidoglycan-binding LysM 2279416 4018412 Sden_1923 Shewanella denitrificans OS217 peptidoglycan-binding LysM YP_562929.1 2263847 R 318161 CDS YP_562930.1 91793279 4018413 complement(2279501..2280901) 1 NC_007954.1 triple helix repeat-containing collagen 2280901 4018413 Sden_1924 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_562930.1 2279501 R 318161 CDS YP_562931.1 91793280 4018414 complement(2280898..2282376) 1 NC_007954.1 triple helix repeat-containing collagen 2282376 4018414 Sden_1925 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_562931.1 2280898 R 318161 CDS YP_562932.1 91793281 4018415 complement(2282376..2284124) 1 NC_007954.1 triple helix repeat-containing collagen 2284124 4018415 Sden_1926 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_562932.1 2282376 R 318161 CDS YP_562933.1 91793282 4018416 complement(2284233..2285378) 1 NC_007954.1 tetratricopeptide TPR_2 2285378 4018416 Sden_1927 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_562933.1 2284233 R 318161 CDS YP_562934.1 91793283 4018417 complement(2285898..2286785) 1 NC_007954.1 transposase, IS4 2286785 4018417 Sden_1928 Shewanella denitrificans OS217 transposase, IS4 YP_562934.1 2285898 R 318161 CDS YP_562935.1 91793284 4018418 complement(2287176..2287697) 1 NC_007954.1 hypothetical protein 2287697 4018418 Sden_1929 Shewanella denitrificans OS217 hypothetical protein YP_562935.1 2287176 R 318161 CDS YP_562936.1 91793285 4018419 complement(2288107..2288427) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2288427 4018419 Sden_1930 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_562936.1 2288107 R 318161 CDS YP_562937.1 91793286 4018420 complement(2288471..2289295) 1 NC_007954.1 helix-turn-helix, AraC type 2289295 4018420 Sden_1931 Shewanella denitrificans OS217 helix-turn-helix, AraC type YP_562937.1 2288471 R 318161 CDS YP_562938.1 91793287 4018421 complement(2289437..2289787) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2289787 4018421 Sden_1932 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_562938.1 2289437 R 318161 CDS YP_562939.1 91793288 4018422 complement(2289831..2290049) 1 NC_007954.1 hypothetical protein 2290049 4018422 Sden_1933 Shewanella denitrificans OS217 hypothetical protein YP_562939.1 2289831 R 318161 CDS YP_562940.1 91793289 4018423 complement(2290738..2291088) 1 NC_007954.1 hypothetical protein 2291088 4018423 Sden_1934 Shewanella denitrificans OS217 hypothetical protein YP_562940.1 2290738 R 318161 CDS YP_562941.1 91793290 4018424 complement(2291516..2293081) 1 NC_007954.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2293081 4018424 Sden_1935 Shewanella denitrificans OS217 6-phosphogluconate dehydrogenase YP_562941.1 2291516 R 318161 CDS YP_562942.1 91793291 4018425 complement(2293340..2293564) 1 NC_007954.1 hypothetical protein 2293564 4018425 Sden_1936 Shewanella denitrificans OS217 hypothetical protein YP_562942.1 2293340 R 318161 CDS YP_562943.1 91793292 4018426 complement(2293737..2294495) 1 NC_007954.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2294495 fabG 4018426 fabG Shewanella denitrificans OS217 3-ketoacyl-ACP reductase YP_562943.1 2293737 R 318161 CDS YP_562944.1 91793293 4018427 complement(2294538..2295458) 1 NC_007954.1 3-hydroxyisobutyrate dehydrogenase 2295458 4018427 Sden_1938 Shewanella denitrificans OS217 3-hydroxyisobutyrate dehydrogenase YP_562944.1 2294538 R 318161 CDS YP_562945.1 91793294 4018428 complement(2295523..2296647) 1 NC_007954.1 enoyl-CoA hydratase/isomerase 2296647 4018428 Sden_1939 Shewanella denitrificans OS217 enoyl-CoA hydratase/isomerase YP_562945.1 2295523 R 318161 CDS YP_562946.1 91793295 4018429 complement(2296647..2297429) 1 NC_007954.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2297429 4018429 Sden_1940 Shewanella denitrificans OS217 enoyl-CoA hydratase YP_562946.1 2296647 R 318161 CDS YP_562947.1 91793296 4018430 complement(2297521..2298678) 1 NC_007954.1 butyryl-CoA dehydrogenase 2298678 4018430 Sden_1941 Shewanella denitrificans OS217 butyryl-CoA dehydrogenase YP_562947.1 2297521 R 318161 CDS YP_562948.1 91793297 4018431 complement(2298806..2300311) 1 NC_007954.1 methylmalonate-semialdehyde dehydrogenase 2300311 4018431 Sden_1942 Shewanella denitrificans OS217 methylmalonate-semialdehyde dehydrogenase YP_562948.1 2298806 R 318161 CDS YP_562949.1 91793298 4018432 complement(2300521..2301711) 1 NC_007954.1 Acetyl-CoA C-acetyltransferase 2301711 4018432 Sden_1943 Shewanella denitrificans OS217 Acetyl-CoA C-acetyltransferase YP_562949.1 2300521 R 318161 CDS YP_562950.1 91793299 4018433 complement(2301954..2302460) 1 NC_007954.1 hypothetical protein 2302460 4018433 Sden_1944 Shewanella denitrificans OS217 hypothetical protein YP_562950.1 2301954 R 318161 CDS YP_562951.1 91793300 4018434 complement(2302607..2303620) 1 NC_007954.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2303620 4018434 Sden_1945 Shewanella denitrificans OS217 beta-hexosaminidase YP_562951.1 2302607 R 318161 CDS YP_562952.1 91793301 4018435 2303975..2305351 1 NC_007954.1 L-serine dehydratase 1 2305351 4018435 Sden_1946 Shewanella denitrificans OS217 L-serine dehydratase 1 YP_562952.1 2303975 D 318161 CDS YP_562953.1 91793302 4018436 complement(2305429..2306520) 1 NC_007954.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2306520 4018436 Sden_1947 Shewanella denitrificans OS217 phosphoserine aminotransferase YP_562953.1 2305429 R 318161 CDS YP_562954.1 91793303 4018437 complement(2306685..2309411) 1 NC_007954.1 DNA gyrase, A subunit 2309411 4018437 Sden_1948 Shewanella denitrificans OS217 DNA gyrase, A subunit YP_562954.1 2306685 R 318161 CDS YP_562955.1 91793304 4018438 2309782..2310510 1 NC_007954.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2310510 4018438 Sden_1949 Shewanella denitrificans OS217 3-demethylubiquinone-9 3-methyltransferase YP_562955.1 2309782 D 318161 CDS YP_562956.1 91793305 4018439 2310510..2311196 1 NC_007954.1 HAD family hydrolase 2311196 4018439 Sden_1950 Shewanella denitrificans OS217 HAD family hydrolase YP_562956.1 2310510 D 318161 CDS YP_562957.1 91793306 4018440 complement(2311898..2312992) 1 NC_007954.1 hypothetical protein 2312992 4018440 Sden_1951 Shewanella denitrificans OS217 hypothetical protein YP_562957.1 2311898 R 318161 CDS YP_562958.1 91793307 4018441 2314632..2316920 1 NC_007954.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2316920 4018441 Sden_1952 Shewanella denitrificans OS217 ribonucleotide-diphosphate reductase subunit alpha YP_562958.1 2314632 D 318161 CDS YP_562959.1 91793308 4018442 2316985..2318115 1 NC_007954.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2318115 nrdB 4018442 nrdB Shewanella denitrificans OS217 ribonucleotide-diphosphate reductase subunit beta YP_562959.1 2316985 D 318161 CDS YP_562960.1 91793309 4018443 2318105..2318518 1 NC_007954.1 ferredoxin 2318518 4018443 Sden_1954 Shewanella denitrificans OS217 ferredoxin YP_562960.1 2318105 D 318161 CDS YP_562961.1 91793310 4018444 complement(2318552..2318926) 1 NC_007954.1 hypothetical protein 2318926 4018444 Sden_1955 Shewanella denitrificans OS217 hypothetical protein YP_562961.1 2318552 R 318161 CDS YP_562962.1 91793311 4018445 2319124..2319726 1 NC_007954.1 NUDIX hydrolase 2319726 4018445 Sden_1956 Shewanella denitrificans OS217 NUDIX hydrolase YP_562962.1 2319124 D 318161 CDS YP_562963.1 91793312 4018446 complement(2319691..2320026) 1 NC_007954.1 hypothetical protein 2320026 4018446 Sden_1957 Shewanella denitrificans OS217 hypothetical protein YP_562963.1 2319691 R 318161 CDS YP_562964.1 91793313 4018447 2320270..2321670 1 NC_007954.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2321670 asnC 4018447 asnC Shewanella denitrificans OS217 asparaginyl-tRNA synthetase YP_562964.1 2320270 D 318161 CDS YP_562965.1 91793314 4018448 complement(2321894..2322544) 1 NC_007954.1 hypothetical protein 2322544 4018448 Sden_1959 Shewanella denitrificans OS217 hypothetical protein YP_562965.1 2321894 R 318161 CDS YP_562966.1 91793315 4018449 2322848..2323807 1 NC_007954.1 hypothetical protein 2323807 4018449 Sden_1960 Shewanella denitrificans OS217 hypothetical protein YP_562966.1 2322848 D 318161 CDS YP_562967.1 91793316 4018450 2324016..2325620 1 NC_007954.1 ABC transporter related 2325620 4018450 Sden_1961 Shewanella denitrificans OS217 ABC transporter related YP_562967.1 2324016 D 318161 CDS YP_562968.1 91793317 4018451 2325955..2326365 1 NC_007954.1 CBS domain-containing protein 2326365 4018451 Sden_1962 Shewanella denitrificans OS217 CBS domain-containing protein YP_562968.1 2325955 D 318161 CDS YP_562969.1 91793318 4018452 complement(2326427..2328034) 1 NC_007954.1 chemotaxis sensory transducer 2328034 4018452 Sden_1963 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_562969.1 2326427 R 318161 CDS YP_562970.1 91793319 4018453 complement(2328308..2329252) 1 NC_007954.1 hypothetical protein 2329252 4018453 Sden_1964 Shewanella denitrificans OS217 hypothetical protein YP_562970.1 2328308 R 318161 CDS YP_562971.1 91793320 4018454 complement(2329492..2329803) 1 NC_007954.1 hypothetical protein 2329803 4018454 Sden_1965 Shewanella denitrificans OS217 hypothetical protein YP_562971.1 2329492 R 318161 CDS YP_562972.1 91793321 4018455 complement(2329955..2331703) 1 NC_007954.1 phosphoglucomutase/phosphomannomutase alpha/beta/subunit 2331703 4018455 Sden_1966 Shewanella denitrificans OS217 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_562972.1 2329955 R 318161 CDS YP_562973.1 91793322 4018456 2331943..2333040 1 NC_007954.1 cation diffusion facilitator family transporter 2333040 4018456 Sden_1967 Shewanella denitrificans OS217 cation diffusion facilitator family transporter YP_562973.1 2331943 D 318161 CDS YP_562974.1 91793323 4018457 2333341..2333979 1 NC_007954.1 cytochrome c oxidase, subunit III 2333979 4018457 Sden_1968 Shewanella denitrificans OS217 cytochrome c oxidase, subunit III YP_562974.1 2333341 D 318161 CDS YP_562975.1 91793324 4018458 2334039..2334350 1 NC_007954.1 hypothetical protein 2334350 4018458 Sden_1969 Shewanella denitrificans OS217 hypothetical protein YP_562975.1 2334039 D 318161 CDS YP_562976.1 91793325 4018459 2334564..2336180 1 NC_007954.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 2336180 4018459 Sden_1970 Shewanella denitrificans OS217 anaerobic nitric oxide reductase transcription regulator YP_562976.1 2334564 D 318161 CDS YP_562977.1 91793326 4018460 complement(2336259..2336990) 1 NC_007954.1 hypothetical protein 2336990 4018460 Sden_1971 Shewanella denitrificans OS217 hypothetical protein YP_562977.1 2336259 R 318161 CDS YP_562978.1 91793327 4018461 2337304..2337657 1 NC_007954.1 hypothetical protein 2337657 4018461 Sden_1972 Shewanella denitrificans OS217 hypothetical protein YP_562978.1 2337304 D 318161 CDS YP_562979.1 91793328 4018462 2337689..2338894 1 NC_007954.1 lanthionine synthetase C-like protein 2338894 4018462 Sden_1973 Shewanella denitrificans OS217 lanthionine synthetase C-like protein YP_562979.1 2337689 D 318161 CDS YP_562980.1 91793329 4018463 2338961..2339278 1 NC_007954.1 hypothetical protein 2339278 4018463 Sden_1974 Shewanella denitrificans OS217 hypothetical protein YP_562980.1 2338961 D 318161 CDS YP_562981.1 91793330 4018464 2339695..2340123 1 NC_007954.1 hypothetical protein 2340123 4018464 Sden_1975 Shewanella denitrificans OS217 hypothetical protein YP_562981.1 2339695 D 318161 CDS YP_562982.1 91793331 4018465 complement(2340141..2340434) 1 NC_007954.1 hypothetical protein 2340434 4018465 Sden_1976 Shewanella denitrificans OS217 hypothetical protein YP_562982.1 2340141 R 318161 CDS YP_562983.1 91793332 4018466 complement(2340459..2341190) 1 NC_007954.1 cytochrome c oxidase, subunit III 2341190 4018466 Sden_1977 Shewanella denitrificans OS217 cytochrome c oxidase, subunit III YP_562983.1 2340459 R 318161 CDS YP_562984.1 91793333 4018467 complement(2341199..2342056) 1 NC_007954.1 ATPase 2342056 4018467 Sden_1978 Shewanella denitrificans OS217 ATPase YP_562984.1 2341199 R 318161 CDS YP_562985.1 91793334 4018468 complement(2342145..2344088) 1 NC_007954.1 von Willebrand factor, type A 2344088 4018468 Sden_1979 Shewanella denitrificans OS217 von Willebrand factor, type A YP_562985.1 2342145 R 318161 CDS YP_562986.1 91793335 4018469 complement(2344290..2345705) 1 NC_007954.1 cytochrome c oxidase, subunit I 2345705 4018469 Sden_1980 Shewanella denitrificans OS217 cytochrome c oxidase, subunit I YP_562986.1 2344290 R 318161 CDS YP_562987.1 91793336 4018470 complement(2345721..2346167) 1 NC_007954.1 nitric-oxide reductase 2346167 4018470 Sden_1981 Shewanella denitrificans OS217 nitric-oxide reductase YP_562987.1 2345721 R 318161 CDS YP_562988.1 91793337 4018471 2346658..2347812 1 NC_007954.1 hypothetical protein 2347812 4018471 Sden_1982 Shewanella denitrificans OS217 hypothetical protein YP_562988.1 2346658 D 318161 CDS YP_562989.1 91793338 4018472 2347968..2349278 1 NC_007954.1 DNA repair ATPase 2349278 4018472 Sden_1983 Shewanella denitrificans OS217 DNA repair ATPase YP_562989.1 2347968 D 318161 CDS YP_562990.1 91793339 4018473 2349278..2349619 1 NC_007954.1 hypothetical protein 2349619 4018473 Sden_1984 Shewanella denitrificans OS217 hypothetical protein YP_562990.1 2349278 D 318161 CDS YP_562991.1 91793340 4018474 complement(2350272..2351978) 1 NC_007954.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2351978 4018474 Sden_1985 Shewanella denitrificans OS217 phosphoglucomutase YP_562991.1 2350272 R 318161 CDS YP_562992.1 91793341 4018475 complement(2352209..2352970) 1 NC_007954.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2352970 4018475 Sden_1986 Shewanella denitrificans OS217 replication initiation regulator SeqA YP_562992.1 2352209 R 318161 CDS YP_562993.1 91793342 4018476 2353298..2354059 1 NC_007954.1 alpha/beta hydrolase fold 2354059 4018476 Sden_1987 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_562993.1 2353298 D 318161 CDS YP_562994.1 91793343 4018477 2354330..2354551 1 NC_007954.1 hypothetical protein 2354551 4018477 Sden_1988 Shewanella denitrificans OS217 hypothetical protein YP_562994.1 2354330 D 318161 CDS YP_562995.1 91793344 4018478 2354561..2354833 1 NC_007954.1 LexA regulated protein 2354833 4018478 Sden_1989 Shewanella denitrificans OS217 LexA regulated protein YP_562995.1 2354561 D 318161 CDS YP_562996.1 91793345 4018479 2354886..2355413 1 NC_007954.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2355413 4018479 Sden_1990 Shewanella denitrificans OS217 flavodoxin FldA YP_562996.1 2354886 D 318161 CDS YP_562997.1 91793346 4018480 2355508..2356731 1 NC_007954.1 hypothetical protein 2356731 4018480 Sden_1991 Shewanella denitrificans OS217 hypothetical protein YP_562997.1 2355508 D 318161 CDS YP_562998.1 91793347 4018481 2356734..2357294 1 NC_007954.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2357294 4018481 Sden_1992 Shewanella denitrificans OS217 elongation factor P YP_562998.1 2356734 D 318161 CDS YP_562999.1 91793348 4018482 2357715..2358929 1 NC_007954.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2358929 4018482 Sden_1993 Shewanella denitrificans OS217 aminotransferase AlaT YP_562999.1 2357715 D 318161 CDS YP_563000.1 91793349 4018483 2359039..2359626 1 NC_007954.1 hypothetical protein 2359626 4018483 Sden_1994 Shewanella denitrificans OS217 hypothetical protein YP_563000.1 2359039 D 318161 CDS YP_563001.1 91793350 4018484 2359795..2361138 1 NC_007954.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2361138 4018484 Sden_1995 Shewanella denitrificans OS217 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_563001.1 2359795 D 318161 CDS YP_563002.1 91793351 4018485 complement(2361240..2363807) 1 NC_007954.1 GGDEF domain-containing protein 2363807 4018485 Sden_1996 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563002.1 2361240 R 318161 CDS YP_563003.1 91793352 4018486 complement(2363804..2364124) 1 NC_007954.1 response regulator receiver 2364124 4018486 Sden_1997 Shewanella denitrificans OS217 response regulator receiver YP_563003.1 2363804 R 318161 CDS YP_563004.1 91793353 4018487 complement(2364141..2366711) 1 NC_007954.1 ATP-binding region, ATPase-like protein 2366711 4018487 Sden_1998 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_563004.1 2364141 R 318161 CDS YP_563005.1 91793354 4018488 2367165..2368043 1 NC_007954.1 GGDEF domain-containing protein 2368043 4018488 Sden_1999 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563005.1 2367165 D 318161 CDS YP_563006.1 91793355 4018489 2368315..2370939 1 NC_007954.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2370939 4018489 Sden_2000 Shewanella denitrificans OS217 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_563006.1 2368315 D 318161 CDS YP_563007.1 91793356 4018490 2371194..2371802 1 NC_007954.1 hypothetical protein 2371802 4018490 Sden_2001 Shewanella denitrificans OS217 hypothetical protein YP_563007.1 2371194 D 318161 CDS YP_563008.1 91793357 4018491 2372002..2374185 1 NC_007954.1 alpha-glucosidase 2374185 4018491 Sden_2002 Shewanella denitrificans OS217 alpha-glucosidase YP_563008.1 2372002 D 318161 CDS YP_563009.1 91793358 4018492 2374579..2376171 1 NC_007954.1 major facilitator transporter 2376171 4018492 Sden_2003 Shewanella denitrificans OS217 major facilitator transporter YP_563009.1 2374579 D 318161 CDS YP_563010.1 91793359 4018493 2376259..2378784 1 NC_007954.1 glucan 1,4-alpha-glucosidase 2378784 4018493 Sden_2004 Shewanella denitrificans OS217 glucan 1,4-alpha-glucosidase YP_563010.1 2376259 D 318161 CDS YP_563011.1 91793360 4018494 2378963..2379319 1 NC_007954.1 glutaredoxin 2379319 4018494 Sden_2005 Shewanella denitrificans OS217 glutaredoxin YP_563011.1 2378963 D 318161 CDS YP_563012.1 91793361 4018495 complement(2379385..2379801) 1 NC_007954.1 regulatory protein, MarR 2379801 4018495 Sden_2006 Shewanella denitrificans OS217 regulatory protein, MarR YP_563012.1 2379385 R 318161 CDS YP_563013.1 91793362 4018496 complement(2379838..2380386) 1 NC_007954.1 hypothetical protein 2380386 4018496 Sden_2007 Shewanella denitrificans OS217 hypothetical protein YP_563013.1 2379838 R 318161 CDS YP_563014.1 91793363 4018497 complement(2380383..2383433) 1 NC_007954.1 FAD linked oxidase-like protein 2383433 4018497 Sden_2008 Shewanella denitrificans OS217 FAD linked oxidase-like protein YP_563014.1 2380383 R 318161 CDS YP_563015.1 91793364 4018498 complement(2383567..2385942) 1 NC_007954.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2385942 4018498 Sden_2009 Shewanella denitrificans OS217 phosphoenolpyruvate synthase YP_563015.1 2383567 R 318161 CDS YP_563016.1 91793365 4018499 2386067..2386879 1 NC_007954.1 hypothetical protein 2386879 4018499 Sden_2010 Shewanella denitrificans OS217 hypothetical protein YP_563016.1 2386067 D 318161 CDS YP_563017.1 91793366 4018500 2387074..2388141 1 NC_007954.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2388141 4018500 Sden_2011 Shewanella denitrificans OS217 phospho-2-dehydro-3-deoxyheptonate aldolase YP_563017.1 2387074 D 318161 CDS YP_563018.1 91793367 4018501 complement(2388225..2388719) 1 NC_007954.1 hypothetical protein 2388719 4018501 Sden_2012 Shewanella denitrificans OS217 hypothetical protein YP_563018.1 2388225 R 318161 CDS YP_563019.1 91793368 4018505 2389592..2390653 1 NC_007954.1 pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2390653 4018505 Sden_2013 Shewanella denitrificans OS217 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_563019.1 2389592 D 318161 CDS YP_563020.1 91793369 4018506 complement(2390787..2391455) 1 NC_007954.1 radical activating enzyme 2391455 4018506 Sden_2014 Shewanella denitrificans OS217 radical activating enzyme YP_563020.1 2390787 R 318161 CDS YP_563021.1 91793370 4018507 2391630..2392328 1 NC_007954.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2392328 4018507 Sden_2015 Shewanella denitrificans OS217 queuosine biosynthesis protein QueC YP_563021.1 2391630 D 318161 CDS YP_563022.1 91793371 4018508 2392312..2392968 1 NC_007954.1 rhomboid-like protein 2392968 4018508 Sden_2016 Shewanella denitrificans OS217 rhomboid-like protein YP_563022.1 2392312 D 318161 CDS YP_563023.1 91793372 4018509 complement(2393098..2394420) 1 NC_007954.1 hypothetical protein 2394420 4018509 Sden_2017 Shewanella denitrificans OS217 hypothetical protein YP_563023.1 2393098 R 318161 CDS YP_563024.1 91793373 4018510 complement(2394431..2395159) 1 NC_007954.1 DNA polymerase III, epsilon subunit 2395159 4018510 Sden_2018 Shewanella denitrificans OS217 DNA polymerase III, epsilon subunit YP_563024.1 2394431 R 318161 CDS YP_563025.1 91793374 4018511 2395224..2395703 1 NC_007954.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2395703 rnhA 4018511 rnhA Shewanella denitrificans OS217 ribonuclease H YP_563025.1 2395224 D 318161 CDS YP_563026.1 91793375 4018512 complement(2395688..2396407) 1 NC_007954.1 methyltransferase type 11 2396407 4018512 Sden_2020 Shewanella denitrificans OS217 methyltransferase type 11 YP_563026.1 2395688 R 318161 CDS YP_563027.1 91793376 4018513 2396508..2397284 1 NC_007954.1 hydroxyacylglutathione hydrolase 2397284 4018513 Sden_2021 Shewanella denitrificans OS217 hydroxyacylglutathione hydrolase YP_563027.1 2396508 D 318161 CDS YP_563028.1 91793377 4018514 2397418..2398974 1 NC_007954.1 lytic transglycosylase, catalytic 2398974 4018514 Sden_2022 Shewanella denitrificans OS217 lytic transglycosylase, catalytic YP_563028.1 2397418 D 318161 CDS YP_563029.1 91793378 4018515 complement(2399119..2399733) 1 NC_007954.1 intracellular proteinase inhibitor domain-containing protein 2399733 4018515 Sden_2023 Shewanella denitrificans OS217 intracellular proteinase inhibitor domain-containing protein YP_563029.1 2399119 R 318161 CDS YP_563030.1 91793379 4018516 complement(2399733..2401577) 1 NC_007954.1 AsmA 2401577 4018516 Sden_2024 Shewanella denitrificans OS217 AsmA YP_563030.1 2399733 R 318161 CDS YP_563031.1 91793380 4018517 complement(2401638..2402171) 1 NC_007954.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2402171 4018517 Sden_2025 Shewanella denitrificans OS217 ribonuclease activity regulator protein RraA YP_563031.1 2401638 R 318161 CDS YP_563032.1 91793381 4018518 2402389..2402703 1 NC_007954.1 hypothetical protein 2402703 4018518 Sden_2026 Shewanella denitrificans OS217 hypothetical protein YP_563032.1 2402389 D 318161 CDS YP_563033.1 91793382 4018519 complement(2402929..2404176) 1 NC_007954.1 glucose/galactose transporter 2404176 4018519 Sden_2027 Shewanella denitrificans OS217 glucose/galactose transporter YP_563033.1 2402929 R 318161 CDS YP_563034.1 91793383 4018520 complement(2404314..2405987) 1 NC_007954.1 alpha amylase, catalytic region 2405987 4018520 Sden_2028 Shewanella denitrificans OS217 alpha amylase, catalytic region YP_563034.1 2404314 R 318161 CDS YP_563035.1 91793384 4018521 2406467..2409193 1 NC_007954.1 TonB-dependent receptor 2409193 4018521 Sden_2029 Shewanella denitrificans OS217 TonB-dependent receptor YP_563035.1 2406467 D 318161 CDS YP_563036.1 91793385 4018522 2409255..2410748 1 NC_007954.1 tryptophan halogenase 2410748 4018522 Sden_2030 Shewanella denitrificans OS217 tryptophan halogenase YP_563036.1 2409255 D 318161 CDS YP_563037.1 91793386 4018523 2410787..2412712 1 NC_007954.1 alpha amylase, catalytic region 2412712 4018523 Sden_2031 Shewanella denitrificans OS217 alpha amylase, catalytic region YP_563037.1 2410787 D 318161 CDS YP_563038.1 91793387 4018524 2412749..2414710 1 NC_007954.1 alpha amylase, catalytic region 2414710 4018524 Sden_2032 Shewanella denitrificans OS217 alpha amylase, catalytic region YP_563038.1 2412749 D 318161 CDS YP_563039.1 91793388 4018526 complement(2415209..2415622) 1 NC_007954.1 hypothetical protein 2415622 4018526 Sden_2034 Shewanella denitrificans OS217 hypothetical protein YP_563039.1 2415209 R 318161 CDS YP_563040.1 91793389 4018527 complement(2415670..2415867) 1 NC_007954.1 hypothetical protein 2415867 4018527 Sden_2035 Shewanella denitrificans OS217 hypothetical protein YP_563040.1 2415670 R 318161 CDS YP_563041.1 91793390 4018528 complement(2415869..2416219) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2416219 4018528 Sden_2036 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_563041.1 2415869 R 318161 CDS YP_563042.1 91793391 4018529 complement(2416379..2417077) 1 NC_007954.1 hypothetical protein 2417077 4018529 Sden_2037 Shewanella denitrificans OS217 hypothetical protein YP_563042.1 2416379 R 318161 CDS YP_563043.1 91793392 4018530 complement(2417260..2417799) 1 NC_007954.1 hypothetical protein 2417799 4018530 Sden_2038 Shewanella denitrificans OS217 hypothetical protein YP_563043.1 2417260 R 318161 CDS YP_563044.1 91793393 4018531 2418072..2421257 1 NC_007954.1 hypothetical protein 2421257 4018531 Sden_2039 Shewanella denitrificans OS217 hypothetical protein YP_563044.1 2418072 D 318161 CDS YP_563045.1 91793394 4018532 complement(2421352..2421786) 1 NC_007954.1 hypothetical protein 2421786 4018532 Sden_2040 Shewanella denitrificans OS217 hypothetical protein YP_563045.1 2421352 R 318161 CDS YP_563046.1 91793395 4018533 complement(2421902..2422525) 1 NC_007954.1 2OG-Fe(II) oxygenase 2422525 4018533 Sden_2041 Shewanella denitrificans OS217 2OG-Fe(II) oxygenase YP_563046.1 2421902 R 318161 CDS YP_563047.1 91793396 4018534 complement(2422664..2424400) 1 NC_007954.1 sulphate transporter 2424400 4018534 Sden_2042 Shewanella denitrificans OS217 sulphate transporter YP_563047.1 2422664 R 318161 CDS YP_563048.1 91793397 4018535 2424698..2425918 1 NC_007954.1 Bcr/CflA subfamily drug resistance transporter 2425918 4018535 Sden_2043 Shewanella denitrificans OS217 Bcr/CflA subfamily drug resistance transporter YP_563048.1 2424698 D 318161 CDS YP_563049.1 91793398 4018536 2426251..2428206 1 NC_007954.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2428206 4018536 Sden_2044 Shewanella denitrificans OS217 acetyl-CoA synthetase YP_563049.1 2426251 D 318161 CDS YP_563050.1 91793399 4018537 complement(2428308..2429546) 1 NC_007954.1 nucleoside recognition 2429546 4018537 Sden_2045 Shewanella denitrificans OS217 nucleoside recognition YP_563050.1 2428308 R 318161 CDS YP_563051.1 91793400 4018538 2429660..2431177 1 NC_007954.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2431177 yebU 4018538 yebU Shewanella denitrificans OS217 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_563051.1 2429660 D 318161 CDS YP_563052.1 91793401 4018539 complement(2431740..2432381) 1 NC_007954.1 hypothetical protein 2432381 4018539 Sden_2047 Shewanella denitrificans OS217 hypothetical protein YP_563052.1 2431740 R 318161 CDS YP_563053.1 91793402 4018540 complement(2432838..2433626) 1 NC_007954.1 TatD-related deoxyribonuclease 2433626 4018540 Sden_2048 Shewanella denitrificans OS217 TatD-related deoxyribonuclease YP_563053.1 2432838 R 318161 CDS YP_563054.1 91793403 4018541 complement(2433673..2433999) 1 NC_007954.1 type IV pilus assembly PilZ 2433999 4018541 Sden_2049 Shewanella denitrificans OS217 type IV pilus assembly PilZ YP_563054.1 2433673 R 318161 CDS YP_563055.1 91793404 4018542 complement(2434009..2434974) 1 NC_007954.1 DNA polymerase III, delta prime subunit 2434974 4018542 Sden_2050 Shewanella denitrificans OS217 DNA polymerase III, delta prime subunit YP_563055.1 2434009 R 318161 CDS YP_563056.1 91793405 4018543 complement(2435041..2435688) 1 NC_007954.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2435688 tmk 4018543 tmk Shewanella denitrificans OS217 thymidylate kinase YP_563056.1 2435041 R 318161 CDS YP_563057.1 91793406 4018544 complement(2435685..2437163) 1 NC_007954.1 aminodeoxychorismate lyase 2437163 4018544 Sden_2052 Shewanella denitrificans OS217 aminodeoxychorismate lyase YP_563057.1 2435685 R 318161 CDS YP_563058.1 91793407 4018545 complement(2437171..2438055) 1 NC_007954.1 aminotransferase, class IV 2438055 4018545 Sden_2053 Shewanella denitrificans OS217 aminotransferase, class IV YP_563058.1 2437171 R 318161 CDS YP_563059.1 91793408 4018546 complement(2438177..2438815) 1 NC_007954.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2438815 4018546 Sden_2054 Shewanella denitrificans OS217 uridine kinase YP_563059.1 2438177 R 318161 CDS YP_563060.1 91793409 4018547 complement(2438824..2439954) 1 NC_007954.1 ATP-binding Mrp/Nbp35 family protein 2439954 4018547 Sden_2055 Shewanella denitrificans OS217 ATP-binding Mrp/Nbp35 family protein YP_563060.1 2438824 R 318161 CDS YP_563061.1 91793410 4018548 2440103..2442172 1 NC_007954.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2442172 metG 4018548 metG Shewanella denitrificans OS217 methionyl-tRNA synthetase YP_563061.1 2440103 D 318161 CDS YP_563062.1 91793411 4018549 2443158..2443985 1 NC_007954.1 hypothetical protein 2443985 4018549 Sden_2057 Shewanella denitrificans OS217 hypothetical protein YP_563062.1 2443158 D 318161 CDS YP_563063.1 91793412 4018550 complement(2444118..2445320) 1 NC_007954.1 transposase, mutator type 2445320 4018550 Sden_2058 Shewanella denitrificans OS217 transposase, mutator type YP_563063.1 2444118 R 318161 CDS YP_563064.1 91793413 4018551 2445910..2446650 1 NC_007954.1 hypothetical protein 2446650 4018551 Sden_2059 Shewanella denitrificans OS217 hypothetical protein YP_563064.1 2445910 D 318161 CDS YP_563065.1 91793414 4018552 complement(2446872..2447504) 1 NC_007954.1 hypothetical protein 2447504 4018552 Sden_2060 Shewanella denitrificans OS217 hypothetical protein YP_563065.1 2446872 R 318161 CDS YP_563066.1 91793415 4018553 complement(2448680..2449129) 1 NC_007954.1 hypothetical protein 2449129 4018553 Sden_2061 Shewanella denitrificans OS217 hypothetical protein YP_563066.1 2448680 R 318161 CDS YP_563067.1 91793416 4018554 2449266..2450468 1 NC_007954.1 transposase, IS4 2450468 4018554 Sden_2062 Shewanella denitrificans OS217 transposase, IS4 YP_563067.1 2449266 D 318161 CDS YP_563068.1 91793417 4018555 2450629..2451384 1 NC_007954.1 hypothetical protein 2451384 4018555 Sden_2063 Shewanella denitrificans OS217 hypothetical protein YP_563068.1 2450629 D 318161 CDS YP_563069.1 91793418 4018556 complement(2451439..2451759) 1 NC_007954.1 hypothetical protein 2451759 4018556 Sden_2064 Shewanella denitrificans OS217 hypothetical protein YP_563069.1 2451439 R 318161 CDS YP_563070.1 91793419 4018557 2452243..2452866 1 NC_007954.1 hypothetical protein 2452866 4018557 Sden_2065 Shewanella denitrificans OS217 hypothetical protein YP_563070.1 2452243 D 318161 CDS YP_563071.1 91793420 4018558 complement(2452903..2453385) 1 NC_007954.1 GCN5-related N-acetyltransferase 2453385 4018558 Sden_2066 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563071.1 2452903 R 318161 CDS YP_563072.1 91793421 4018559 2453818..2454318 1 NC_007954.1 hypothetical protein 2454318 4018559 Sden_2067 Shewanella denitrificans OS217 hypothetical protein YP_563072.1 2453818 D 318161 CDS YP_563073.1 91793422 4018560 2454345..2455373 1 NC_007954.1 integrase catalytic subunit 2455373 4018560 Sden_2068 Shewanella denitrificans OS217 integrase catalytic subunit YP_563073.1 2454345 D 318161 CDS YP_563074.1 91793423 4018561 complement(2455669..2456052) 1 NC_007954.1 hypothetical protein 2456052 4018561 Sden_2069 Shewanella denitrificans OS217 hypothetical protein YP_563074.1 2455669 R 318161 CDS YP_563075.1 91793424 4018562 complement(2456923..2458320) 1 NC_007954.1 glycoside hydrolase family protein 2458320 4018562 Sden_2070 Shewanella denitrificans OS217 glycoside hydrolase family protein YP_563075.1 2456923 R 318161 CDS YP_563076.1 91793425 4018563 complement(2458783..2459028) 1 NC_007954.1 hypothetical protein 2459028 4018563 Sden_2071 Shewanella denitrificans OS217 hypothetical protein YP_563076.1 2458783 R 318161 CDS YP_563077.1 91793426 4018564 2459220..2459654 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2459654 4018564 Sden_2072 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_563077.1 2459220 D 318161 CDS YP_563078.1 91793427 4018565 complement(2459750..2460520) 1 NC_007954.1 hypothetical protein 2460520 4018565 Sden_2073 Shewanella denitrificans OS217 hypothetical protein YP_563078.1 2459750 R 318161 CDS YP_563079.1 91793428 4018566 2460738..2461097 1 NC_007954.1 hypothetical protein 2461097 4018566 Sden_2074 Shewanella denitrificans OS217 hypothetical protein YP_563079.1 2460738 D 318161 CDS YP_563080.1 91793429 4018567 2461588..2463255 1 NC_007954.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2463255 asnB 4018567 asnB Shewanella denitrificans OS217 asparagine synthetase B YP_563080.1 2461588 D 318161 CDS YP_563081.1 91793430 4018568 complement(2463485..2464135) 1 NC_007954.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2464135 4018568 Sden_2076 Shewanella denitrificans OS217 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_563081.1 2463485 R 318161 CDS YP_563082.1 91793431 4018569 complement(2464152..2465978) 1 NC_007954.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2465978 4018569 Sden_2077 Shewanella denitrificans OS217 phosphogluconate dehydratase YP_563082.1 2464152 R 318161 CDS YP_563083.1 91793432 4018570 complement(2465990..2466688) 1 NC_007954.1 6-phosphogluconolactonase 2466688 4018570 Sden_2078 Shewanella denitrificans OS217 6-phosphogluconolactonase YP_563083.1 2465990 R 318161 CDS YP_563084.1 91793433 4018571 complement(2466697..2468169) 1 NC_007954.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2468169 4018571 Sden_2079 Shewanella denitrificans OS217 glucose-6-phosphate 1-dehydrogenase YP_563084.1 2466697 R 318161 CDS YP_563085.1 91793434 4018572 2468490..2469350 1 NC_007954.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2469350 4018572 Sden_2080 Shewanella denitrificans OS217 DNA-binding transcriptional regulator HexR YP_563085.1 2468490 D 318161 CDS YP_563086.1 91793435 4018573 2469629..2471068 1 NC_007954.1 pyruvate kinase 2471068 4018573 Sden_2081 Shewanella denitrificans OS217 pyruvate kinase YP_563086.1 2469629 D 318161 CDS YP_563087.1 91793436 4018574 2471830..2473620 1 NC_007954.1 hypothetical protein 2473620 4018574 Sden_2082 Shewanella denitrificans OS217 hypothetical protein YP_563087.1 2471830 D 318161 CDS YP_563088.1 91793437 4018575 2473633..2475375 1 NC_007954.1 hypothetical protein 2475375 4018575 Sden_2083 Shewanella denitrificans OS217 hypothetical protein YP_563088.1 2473633 D 318161 CDS YP_563089.1 91793438 4018576 complement(2475799..2476404) 1 NC_007954.1 hypothetical protein 2476404 4018576 Sden_2084 Shewanella denitrificans OS217 hypothetical protein YP_563089.1 2475799 R 318161 CDS YP_563090.1 91793439 4018577 2477671..2478942 1 NC_007954.1 esterase 2478942 4018577 Sden_2085 Shewanella denitrificans OS217 esterase YP_563090.1 2477671 D 318161 CDS YP_563091.1 91793440 4018578 complement(2479032..2480042) 1 NC_007954.1 twin-arginine translocation pathway signal 2480042 4018578 Sden_2086 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_563091.1 2479032 R 318161 CDS YP_563092.1 91793441 4018579 complement(2480068..2480958) 1 NC_007954.1 hypothetical protein 2480958 4018579 Sden_2087 Shewanella denitrificans OS217 hypothetical protein YP_563092.1 2480068 R 318161 CDS YP_563093.1 91793442 4018580 2481475..2482575 1 NC_007954.1 esterase 2482575 4018580 Sden_2088 Shewanella denitrificans OS217 esterase YP_563093.1 2481475 D 318161 CDS YP_563094.1 91793443 4018581 2483087..2484937 1 NC_007954.1 type III restriction enzyme, res subunit 2484937 4018581 Sden_2089 Shewanella denitrificans OS217 type III restriction enzyme, res subunit YP_563094.1 2483087 D 318161 CDS YP_563095.1 91793444 4018582 2485108..2485368 1 NC_007954.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2485368 grxA 4018582 grxA Shewanella denitrificans OS217 glutaredoxin YP_563095.1 2485108 D 318161 CDS YP_563096.1 91793445 4018583 complement(2485482..2486087) 1 NC_007954.1 alkyl hydroperoxide reductase 2486087 4018583 Sden_2091 Shewanella denitrificans OS217 alkyl hydroperoxide reductase YP_563096.1 2485482 R 318161 CDS YP_563097.1 91793446 4018584 2486362..2487699 1 NC_007954.1 Na+/H+ antiporter NhaC 2487699 4018584 Sden_2092 Shewanella denitrificans OS217 Na+/H+ antiporter NhaC YP_563097.1 2486362 D 318161 CDS YP_563098.1 91793447 4018585 complement(2487863..2488489) 1 NC_007954.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2488489 upp 4018585 upp Shewanella denitrificans OS217 uracil phosphoribosyltransferase YP_563098.1 2487863 R 318161 CDS YP_563099.1 91793448 4018586 2488730..2489767 1 NC_007954.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2489767 4018586 Sden_2094 Shewanella denitrificans OS217 phosphoribosylaminoimidazole synthetase YP_563099.1 2488730 D 318161 CDS YP_563100.1 91793449 4018587 2489768..2490409 1 NC_007954.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2490409 purN 4018587 purN Shewanella denitrificans OS217 phosphoribosylglycinamide formyltransferase YP_563100.1 2489768 D 318161 CDS YP_563101.1 91793450 4018588 complement(2490486..2491460) 1 NC_007954.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2491460 cysB 4018588 cysB Shewanella denitrificans OS217 transcriptional regulator CysB YP_563101.1 2490486 R 318161 CDS YP_563102.1 91793451 4018589 2491832..2492611 1 NC_007954.1 hypothetical protein 2492611 4018589 Sden_2097 Shewanella denitrificans OS217 hypothetical protein YP_563102.1 2491832 D 318161 CDS YP_563103.1 91793452 4018590 complement(2492792..2493277) 1 NC_007954.1 CreA 2493277 4018590 Sden_2098 Shewanella denitrificans OS217 CreA YP_563103.1 2492792 R 318161 CDS YP_563104.1 91793453 4018591 complement(2493350..2494720) 1 NC_007954.1 chaperone 2494720 4018591 Sden_2099 Shewanella denitrificans OS217 chaperone YP_563104.1 2493350 R 318161 CDS YP_563105.1 91793454 4018592 complement(2494885..2495865) 1 NC_007954.1 hypothetical protein 2495865 4018592 Sden_2100 Shewanella denitrificans OS217 hypothetical protein YP_563105.1 2494885 R 318161 CDS YP_563106.1 91793455 4018593 2496104..2496832 1 NC_007954.1 glutathione S-transferase-like protein 2496832 4018593 Sden_2101 Shewanella denitrificans OS217 glutathione S-transferase-like protein YP_563106.1 2496104 D 318161 CDS YP_563107.1 91793456 4018594 2497457..2500243 1 NC_007954.1 amidohydrolase 3 2500243 4018594 Sden_2102 Shewanella denitrificans OS217 amidohydrolase 3 YP_563107.1 2497457 D 318161 CDS YP_563108.1 91793457 4018595 complement(2500696..2501025) 1 NC_007954.1 hypothetical protein 2501025 4018595 Sden_2103 Shewanella denitrificans OS217 hypothetical protein YP_563108.1 2500696 R 318161 CDS YP_563109.1 91793458 4018596 2501440..2502159 1 NC_007954.1 hypothetical protein 2502159 4018596 Sden_2104 Shewanella denitrificans OS217 hypothetical protein YP_563109.1 2501440 D 318161 CDS YP_563110.1 91793459 4018597 2502311..2502886 1 NC_007954.1 phosphoglycerate mutase 2502886 4018597 Sden_2105 Shewanella denitrificans OS217 phosphoglycerate mutase YP_563110.1 2502311 D 318161 CDS YP_563111.1 91793460 4018598 2502929..2503249 1 NC_007954.1 hypothetical protein 2503249 4018598 Sden_2106 Shewanella denitrificans OS217 hypothetical protein YP_563111.1 2502929 D 318161 CDS YP_563112.1 91793461 4018599 2503521..2503970 1 NC_007954.1 thioesterase superfamily protein 2503970 4018599 Sden_2107 Shewanella denitrificans OS217 thioesterase superfamily protein YP_563112.1 2503521 D 318161 CDS YP_563113.1 91793462 4018600 2504240..2504884 1 NC_007954.1 hypothetical protein 2504884 4018600 Sden_2108 Shewanella denitrificans OS217 hypothetical protein YP_563113.1 2504240 D 318161 CDS YP_563114.1 91793463 4018601 2504878..2505729 1 NC_007954.1 aldose 1-epimerase 2505729 4018601 Sden_2109 Shewanella denitrificans OS217 aldose 1-epimerase YP_563114.1 2504878 D 318161 CDS YP_563115.1 91793464 4018602 2505844..2509512 1 NC_007954.1 hypothetical protein 2509512 4018602 Sden_2110 Shewanella denitrificans OS217 hypothetical protein YP_563115.1 2505844 D 318161 CDS YP_563116.1 91793465 4018603 2509522..2509722 1 NC_007954.1 hypothetical protein 2509722 4018603 Sden_2111 Shewanella denitrificans OS217 hypothetical protein YP_563116.1 2509522 D 318161 CDS YP_563117.1 91793466 4018604 2509737..2510057 1 NC_007954.1 hypothetical protein 2510057 4018604 Sden_2112 Shewanella denitrificans OS217 hypothetical protein YP_563117.1 2509737 D 318161 CDS YP_563118.1 91793467 4018605 2510103..2510900 1 NC_007954.1 hypothetical protein 2510900 4018605 Sden_2113 Shewanella denitrificans OS217 hypothetical protein YP_563118.1 2510103 D 318161 CDS YP_563119.1 91793468 4018606 complement(2511037..2511303) 1 NC_007954.1 hypothetical protein 2511303 4018606 Sden_2114 Shewanella denitrificans OS217 hypothetical protein YP_563119.1 2511037 R 318161 CDS YP_563120.1 91793469 4018607 complement(2511321..2513597) 1 NC_007954.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2513597 4018607 Sden_2115 Shewanella denitrificans OS217 acyl-CoA dehydrogenase YP_563120.1 2511321 R 318161 CDS YP_563121.1 91793470 4018608 complement(2513621..2514265) 1 NC_007954.1 regulatory protein, TetR 2514265 4018608 Sden_2116 Shewanella denitrificans OS217 regulatory protein, TetR YP_563121.1 2513621 R 318161 CDS YP_563122.1 91793471 4018609 2514456..2516294 1 NC_007954.1 peptidyl-dipeptidase A 2516294 4018609 Sden_2117 Shewanella denitrificans OS217 peptidyl-dipeptidase A YP_563122.1 2514456 D 318161 CDS YP_563123.1 91793472 4018610 2516697..2517227 1 NC_007954.1 hypothetical protein 2517227 4018610 Sden_2118 Shewanella denitrificans OS217 hypothetical protein YP_563123.1 2516697 D 318161 CDS YP_563124.1 91793473 4018611 2517241..2517717 1 NC_007954.1 metal-binding protein 2517717 4018611 Sden_2119 Shewanella denitrificans OS217 metal-binding protein YP_563124.1 2517241 D 318161 CDS YP_563125.1 91793474 4018612 complement(2517774..2519936) 1 NC_007954.1 GGDEF domain-containing protein 2519936 4018612 Sden_2120 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563125.1 2517774 R 318161 CDS YP_563126.1 91793475 4018613 complement(2520102..2520434) 1 NC_007954.1 hypothetical protein 2520434 4018613 Sden_2121 Shewanella denitrificans OS217 hypothetical protein YP_563126.1 2520102 R 318161 CDS YP_563127.1 91793476 4018614 2520809..2522527 1 NC_007954.1 acetolactate synthase 3 catalytic subunit 2522527 4018614 Sden_2122 Shewanella denitrificans OS217 acetolactate synthase 3 catalytic subunit YP_563127.1 2520809 D 318161 CDS YP_563128.1 91793477 4018615 2522527..2523021 1 NC_007954.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2523021 ilvH 4018615 ilvH Shewanella denitrificans OS217 acetolactate synthase 3 regulatory subunit YP_563128.1 2522527 D 318161 CDS YP_563129.1 91793478 4018616 complement(2523119..2523538) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2523538 4018616 Sden_2124 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_563129.1 2523119 R 318161 CDS YP_563130.1 91793479 4018617 2523691..2524143 1 NC_007954.1 redox-sensitive transcriptional activator SoxR 2524143 4018617 Sden_2125 Shewanella denitrificans OS217 redox-sensitive transcriptional activator SoxR YP_563130.1 2523691 D 318161 CDS YP_563131.1 91793480 4018618 complement(2524327..2524779) 1 NC_007954.1 heat shock protein Hsp20 2524779 4018618 Sden_2126 Shewanella denitrificans OS217 heat shock protein Hsp20 YP_563131.1 2524327 R 318161 CDS YP_563132.1 91793481 4018619 2525612..2526064 1 NC_007954.1 hypothetical protein 2526064 4018619 Sden_2127 Shewanella denitrificans OS217 hypothetical protein YP_563132.1 2525612 D 318161 CDS YP_563133.1 91793482 4018620 complement(2526272..2526847) 1 NC_007954.1 hypothetical protein 2526847 4018620 Sden_2128 Shewanella denitrificans OS217 hypothetical protein YP_563133.1 2526272 R 318161 CDS YP_563134.1 91793483 4018621 complement(2526929..2527525) 1 NC_007954.1 cytochrome B561 2527525 4018621 Sden_2129 Shewanella denitrificans OS217 cytochrome B561 YP_563134.1 2526929 R 318161 CDS YP_563135.1 91793484 4018622 complement(2527785..2528648) 1 NC_007954.1 metalloprotease; heat shock protein HtpX 2528648 4018622 Sden_2130 Shewanella denitrificans OS217 heat shock protein HtpX YP_563135.1 2527785 R 318161 CDS YP_563136.1 91793485 4018623 2528857..2529564 1 NC_007954.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2529564 4018623 Sden_2131 Shewanella denitrificans OS217 peptidase E YP_563136.1 2528857 D 318161 CDS YP_563137.1 91793486 4018624 2529823..2531007 1 NC_007954.1 DegT/DnrJ/EryC1/StrS aminotransferase 2531007 4018624 Sden_2132 Shewanella denitrificans OS217 DegT/DnrJ/EryC1/StrS aminotransferase YP_563137.1 2529823 D 318161 CDS YP_563138.1 91793487 4018625 2531082..2532152 1 NC_007954.1 iron-containing alcohol dehydrogenase 2532152 4018625 Sden_2133 Shewanella denitrificans OS217 iron-containing alcohol dehydrogenase YP_563138.1 2531082 D 318161 CDS YP_563139.1 91793488 4018626 2532280..2533017 1 NC_007954.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2533017 4018626 Sden_2134 Shewanella denitrificans OS217 3-deoxy-manno-octulosonate cytidylyltransferase YP_563139.1 2532280 D 318161 CDS YP_563140.1 91793489 4018627 2533180..2533482 1 NC_007954.1 hypothetical protein 2533482 4018627 Sden_2135 Shewanella denitrificans OS217 hypothetical protein YP_563140.1 2533180 D 318161 CDS YP_563141.1 91793490 4018628 2534423..2537032 1 NC_007954.1 chitinase 2537032 4018628 Sden_2136 Shewanella denitrificans OS217 chitinase YP_563141.1 2534423 D 318161 CDS YP_563142.1 91793491 4018629 complement(2537177..2538892) 1 NC_007954.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2538892 ushA 4018629 ushA Shewanella denitrificans OS217 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_563142.1 2537177 R 318161 CDS YP_563143.1 91793492 4018630 complement(2539270..2539974) 1 NC_007954.1 carboxylesterase 2539974 4018630 Sden_2138 Shewanella denitrificans OS217 carboxylesterase YP_563143.1 2539270 R 318161 CDS YP_563144.1 91793493 4018631 complement(2540037..2540270) 1 NC_007954.1 hypothetical protein 2540270 4018631 Sden_2139 Shewanella denitrificans OS217 hypothetical protein YP_563144.1 2540037 R 318161 CDS YP_563145.1 91793494 4018632 complement(2540423..2540905) 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 2540905 4018632 Sden_2140 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_563145.1 2540423 R 318161 CDS YP_563146.1 91793495 4018633 complement(2540998..2542311) 1 NC_007954.1 lytic murein transglycosylase 2542311 4018633 Sden_2141 Shewanella denitrificans OS217 lytic murein transglycosylase YP_563146.1 2540998 R 318161 CDS YP_563147.1 91793496 4018634 2542399..2542770 1 NC_007954.1 hypothetical protein 2542770 4018634 Sden_2142 Shewanella denitrificans OS217 hypothetical protein YP_563147.1 2542399 D 318161 CDS YP_563148.1 91793497 4018635 2542904..2543551 1 NC_007954.1 hypothetical protein 2543551 4018635 Sden_2143 Shewanella denitrificans OS217 hypothetical protein YP_563148.1 2542904 D 318161 CDS YP_563149.1 91793498 4018636 complement(2543577..2544518) 1 NC_007954.1 CheW-like protein 2544518 4018636 Sden_2144 Shewanella denitrificans OS217 CheW-like protein YP_563149.1 2543577 R 318161 CDS YP_563150.1 91793499 4018637 2545283..2545465 1 NC_007954.1 hypothetical protein 2545465 4018637 Sden_2145 Shewanella denitrificans OS217 hypothetical protein YP_563150.1 2545283 D 318161 CDS YP_563151.1 91793500 4018638 complement(2545710..2546729) 1 NC_007954.1 hypothetical protein 2546729 4018638 Sden_2146 Shewanella denitrificans OS217 hypothetical protein YP_563151.1 2545710 R 318161 CDS YP_563152.1 91793501 4018639 2547024..2547431 1 NC_007954.1 hypothetical protein 2547431 4018639 Sden_2147 Shewanella denitrificans OS217 hypothetical protein YP_563152.1 2547024 D 318161 CDS YP_563153.1 91793502 4018640 complement(2547428..2548204) 1 NC_007954.1 hypothetical protein 2548204 4018640 Sden_2148 Shewanella denitrificans OS217 hypothetical protein YP_563153.1 2547428 R 318161 CDS YP_563154.1 91793503 4018641 2548294..2548743 1 NC_007954.1 hypothetical protein 2548743 4018641 Sden_2149 Shewanella denitrificans OS217 hypothetical protein YP_563154.1 2548294 D 318161 CDS YP_563155.1 91793504 4018642 complement(2549005..2549820) 1 NC_007954.1 hypothetical protein 2549820 4018642 Sden_2150 Shewanella denitrificans OS217 hypothetical protein YP_563155.1 2549005 R 318161 CDS YP_563156.1 91793505 4018643 complement(2549823..2550323) 1 NC_007954.1 periplasmic protein-like protein 2550323 4018643 Sden_2151 Shewanella denitrificans OS217 periplasmic protein-like protein YP_563156.1 2549823 R 318161 CDS YP_563157.1 91793506 4018644 complement(2550384..2550959) 1 NC_007954.1 PepSY-associated TM helix 2550959 4018644 Sden_2152 Shewanella denitrificans OS217 PepSY-associated TM helix YP_563157.1 2550384 R 318161 CDS YP_563158.1 91793507 4018645 complement(2550960..2552306) 1 NC_007954.1 TPR repeat-containing protein 2552306 4018645 Sden_2153 Shewanella denitrificans OS217 TPR repeat-containing protein YP_563158.1 2550960 R 318161 CDS YP_563159.1 91793508 4018646 complement(2552415..2553026) 1 NC_007954.1 hypothetical protein 2553026 4018646 Sden_2154 Shewanella denitrificans OS217 hypothetical protein YP_563159.1 2552415 R 318161 CDS YP_563160.1 91793509 4018647 complement(2553068..2553472) 1 NC_007954.1 biopolymer transport protein ExbD/TolR 2553472 4018647 Sden_2155 Shewanella denitrificans OS217 biopolymer transport protein ExbD/TolR YP_563160.1 2553068 R 318161 CDS YP_563161.1 91793510 4018648 complement(2553462..2553998) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 2553998 4018648 Sden_2156 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_563161.1 2553462 R 318161 CDS YP_563162.1 91793511 4018649 complement(2553988..2555454) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 2555454 4018649 Sden_2157 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_563162.1 2553988 R 318161 CDS YP_563163.1 91793512 4018650 complement(2555454..2556206) 1 NC_007954.1 hypothetical protein 2556206 4018650 Sden_2158 Shewanella denitrificans OS217 hypothetical protein YP_563163.1 2555454 R 318161 CDS YP_563164.1 91793513 4018651 complement(2556353..2558407) 1 NC_007954.1 TonB-dependent receptor 2558407 4018651 Sden_2159 Shewanella denitrificans OS217 TonB-dependent receptor YP_563164.1 2556353 R 318161 CDS YP_563165.1 91793514 4018652 complement(2558647..2559441) 1 NC_007954.1 hypothetical protein 2559441 4018652 Sden_2160 Shewanella denitrificans OS217 hypothetical protein YP_563165.1 2558647 R 318161 CDS YP_563166.1 91793515 4018653 complement(2559678..2560607) 1 NC_007954.1 regulatory protein, LysR 2560607 4018653 Sden_2161 Shewanella denitrificans OS217 regulatory protein, LysR YP_563166.1 2559678 R 318161 CDS YP_563167.1 91793516 4018654 2560854..2562014 1 NC_007954.1 homogentisate 1,2-dioxygenase 2562014 4018654 Sden_2162 Shewanella denitrificans OS217 homogentisate 1,2-dioxygenase YP_563167.1 2560854 D 318161 CDS YP_563168.1 91793517 4018655 2562082..2563122 1 NC_007954.1 4-hydroxyphenylpyruvate dioxygenase 2563122 4018655 Sden_2163 Shewanella denitrificans OS217 4-hydroxyphenylpyruvate dioxygenase YP_563168.1 2562082 D 318161 CDS YP_563169.1 91793518 4018656 2563283..2563960 1 NC_007954.1 lysine exporter protein LysE/YggA 2563960 4018656 Sden_2164 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_563169.1 2563283 D 318161 CDS YP_563170.1 91793519 4018657 complement(2564306..2565139) 1 NC_007954.1 hypothetical protein 2565139 4018657 Sden_2165 Shewanella denitrificans OS217 hypothetical protein YP_563170.1 2564306 R 318161 CDS YP_563171.1 91793520 4018658 complement(2565732..2566322) 1 NC_007954.1 hypothetical protein 2566322 4018658 Sden_2166 Shewanella denitrificans OS217 hypothetical protein YP_563171.1 2565732 R 318161 CDS YP_563172.1 91793521 4018659 complement(2566900..2567379) 1 NC_007954.1 hypothetical protein 2567379 4018659 Sden_2167 Shewanella denitrificans OS217 hypothetical protein YP_563172.1 2566900 R 318161 CDS YP_563173.1 91793522 4018660 complement(2567867..2568895) 1 NC_007954.1 integrase catalytic subunit 2568895 4018660 Sden_2168 Shewanella denitrificans OS217 integrase catalytic subunit YP_563173.1 2567867 R 318161 CDS YP_563174.1 91793523 4018661 complement(2568922..2569422) 1 NC_007954.1 hypothetical protein 2569422 4018661 Sden_2169 Shewanella denitrificans OS217 hypothetical protein YP_563174.1 2568922 R 318161 CDS YP_563175.1 91793524 4018662 2570284..2571270 1 NC_007954.1 helix-turn-helix, AraC type 2571270 4018662 Sden_2170 Shewanella denitrificans OS217 helix-turn-helix, AraC type YP_563175.1 2570284 D 318161 CDS YP_563176.1 91793525 4018663 2571533..2572954 1 NC_007954.1 peptidase S41 2572954 4018663 Sden_2171 Shewanella denitrificans OS217 peptidase S41 YP_563176.1 2571533 D 318161 CDS YP_563177.1 91793526 4018664 complement(2573537..2575600) 1 NC_007954.1 TonB-dependent receptor, plug 2575600 4018664 Sden_2172 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_563177.1 2573537 R 318161 CDS YP_563178.1 91793527 4018665 2575654..2576097 1 NC_007954.1 regulatory protein, MerR 2576097 4018665 Sden_2173 Shewanella denitrificans OS217 regulatory protein, MerR YP_563178.1 2575654 D 318161 CDS YP_563179.1 91793528 4018666 complement(2576307..2576537) 1 NC_007954.1 hypothetical protein 2576537 4018666 Sden_2174 Shewanella denitrificans OS217 hypothetical protein YP_563179.1 2576307 R 318161 CDS YP_563180.1 91793529 4018667 2577224..2578312 1 NC_007954.1 hypothetical protein 2578312 4018667 Sden_2175 Shewanella denitrificans OS217 hypothetical protein YP_563180.1 2577224 D 318161 CDS YP_563181.1 91793530 4018668 complement(2578421..2579623) 1 NC_007954.1 transposase, mutator type 2579623 4018668 Sden_2176 Shewanella denitrificans OS217 transposase, mutator type YP_563181.1 2578421 R 318161 CDS YP_563182.1 91793531 4018669 complement(2579989..2580900) 1 NC_007954.1 hypothetical protein 2580900 4018669 Sden_2177 Shewanella denitrificans OS217 hypothetical protein YP_563182.1 2579989 R 318161 CDS YP_563183.1 91793532 4018670 complement(2580979..2581857) 1 NC_007954.1 WD-40-like beta propeller repeat-containing protein 2581857 4018670 Sden_2178 Shewanella denitrificans OS217 WD-40-like beta propeller repeat-containing protein YP_563183.1 2580979 R 318161 CDS YP_563184.1 91793533 4018671 complement(2583802..2584728) 1 NC_007954.1 auxin efflux carrier 2584728 4018671 Sden_2179 Shewanella denitrificans OS217 auxin efflux carrier YP_563184.1 2583802 R 318161 CDS YP_563185.1 91793534 4018672 complement(2584838..2585710) 1 NC_007954.1 succinyl-CoA synthetase subunit alpha 2585710 4018672 Sden_2180 Shewanella denitrificans OS217 succinyl-CoA synthetase subunit alpha YP_563185.1 2584838 R 318161 CDS YP_563186.1 91793535 4018673 complement(2585710..2586876) 1 NC_007954.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2586876 sucC 4018673 sucC Shewanella denitrificans OS217 succinyl-CoA synthetase subunit beta YP_563186.1 2585710 R 318161 CDS YP_563187.1 91793536 4018674 complement(2586952..2588142) 1 NC_007954.1 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 2588142 4018674 Sden_2182 Shewanella denitrificans OS217 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_563187.1 2586952 R 318161 CDS YP_563188.1 91793537 4018675 complement(2588172..2590994) 1 NC_007954.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2590994 sucA 4018675 sucA Shewanella denitrificans OS217 2-oxoglutarate dehydrogenase E1 component YP_563188.1 2588172 R 318161 CDS YP_563189.1 91793538 4018676 complement(2591205..2591912) 1 NC_007954.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2591912 sdhB 4018676 sdhB Shewanella denitrificans OS217 succinate dehydrogenase iron-sulfur subunit YP_563189.1 2591205 R 318161 CDS YP_563190.1 91793539 4018677 complement(2591929..2593695) 1 NC_007954.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2593695 sdhA 4018677 sdhA Shewanella denitrificans OS217 succinate dehydrogenase flavoprotein subunit YP_563190.1 2591929 R 318161 CDS YP_563191.1 91793540 4018678 complement(2593695..2594042) 1 NC_007954.1 succinate dehydrogenase, cytochrome b subunit 2594042 4018678 Sden_2186 Shewanella denitrificans OS217 succinate dehydrogenase, cytochrome b subunit YP_563191.1 2593695 R 318161 CDS YP_563192.1 91793541 4018679 complement(2594036..2594431) 1 NC_007954.1 succinate dehydrogenase, cytochrome b subunit 2594431 4018679 Sden_2187 Shewanella denitrificans OS217 succinate dehydrogenase, cytochrome b subunit YP_563192.1 2594036 R 318161 CDS YP_563193.1 91793542 4018681 2594836..2596173 1 NC_007954.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2596173 gltA 4018681 gltA Shewanella denitrificans OS217 type II citrate synthase YP_563193.1 2594836 D 318161 CDS YP_563194.1 91793543 4018682 2596325..2597731 1 NC_007954.1 hypothetical protein 2597731 4018682 Sden_2190 Shewanella denitrificans OS217 hypothetical protein YP_563194.1 2596325 D 318161 CDS YP_563195.1 91793544 4018683 2597745..2598545 1 NC_007954.1 band 7 protein 2598545 4018683 Sden_2191 Shewanella denitrificans OS217 band 7 protein YP_563195.1 2597745 D 318161 CDS YP_563196.1 91793545 4018684 2598981..2600039 1 NC_007954.1 secretion protein HlyD 2600039 4018684 Sden_2192 Shewanella denitrificans OS217 secretion protein HlyD YP_563196.1 2598981 D 318161 CDS YP_563197.1 91793546 4018685 2600052..2603339 1 NC_007954.1 acriflavin resistance protein 2603339 4018685 Sden_2193 Shewanella denitrificans OS217 acriflavin resistance protein YP_563197.1 2600052 D 318161 CDS YP_563198.1 91793547 4018686 2603336..2606428 1 NC_007954.1 acriflavin resistance protein 2606428 4018686 Sden_2194 Shewanella denitrificans OS217 acriflavin resistance protein YP_563198.1 2603336 D 318161 CDS YP_563199.1 91793548 4018687 2606432..2607301 1 NC_007954.1 beta-lactamase-like protein 2607301 4018687 Sden_2195 Shewanella denitrificans OS217 beta-lactamase-like protein YP_563199.1 2606432 D 318161 CDS YP_563200.1 91793549 4018688 complement(2607370..2608104) 1 NC_007954.1 hypothetical protein 2608104 4018688 Sden_2196 Shewanella denitrificans OS217 hypothetical protein YP_563200.1 2607370 R 318161 CDS YP_563201.1 91793550 4018689 complement(2608316..2608486) 1 NC_007954.1 hypothetical protein 2608486 4018689 Sden_2197 Shewanella denitrificans OS217 hypothetical protein YP_563201.1 2608316 R 318161 CDS YP_563202.1 91793551 4018690 complement(2608499..2609494) 1 NC_007954.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2609494 lpxK 4018690 lpxK Shewanella denitrificans OS217 tetraacyldisaccharide 4'-kinase YP_563202.1 2608499 R 318161 CDS YP_563203.1 91793552 4018691 complement(2609495..2611297) 1 NC_007954.1 Lipid A export ATP-binding/permease protein MsbA 2611297 4018691 Sden_2199 Shewanella denitrificans OS217 Lipid A export ATP-binding/permease protein MsbA YP_563203.1 2609495 R 318161 CDS YP_563204.1 91793553 4018692 complement(2611337..2613958) 1 NC_007954.1 DNA internalization-related competence protein ComEC/Rec2 2613958 4018692 Sden_2200 Shewanella denitrificans OS217 DNA internalization-related competence protein ComEC/Rec2 YP_563204.1 2611337 R 318161 CDS YP_563205.1 91793554 4018693 2613991..2614494 1 NC_007954.1 hypothetical protein 2614494 4018693 Sden_2201 Shewanella denitrificans OS217 hypothetical protein YP_563205.1 2613991 D 318161 CDS YP_563206.1 91793555 4018694 complement(2614535..2615332) 1 NC_007954.1 amino acid ABC transporter periplasmic protein 2615332 4018694 Sden_2202 Shewanella denitrificans OS217 amino acid ABC transporter periplasmic protein YP_563206.1 2614535 R 318161 CDS YP_563207.1 91793556 4018695 complement(2615601..2616410) 1 NC_007954.1 tRNA--hydroxylase 2616410 4018695 Sden_2203 Shewanella denitrificans OS217 tRNA--hydroxylase YP_563207.1 2615601 R 318161 CDS YP_563208.1 91793557 4018696 2616618..2617325 1 NC_007954.1 regulatory protein, TetR 2617325 4018696 Sden_2204 Shewanella denitrificans OS217 regulatory protein, TetR YP_563208.1 2616618 D 318161 CDS YP_563209.1 91793558 4018697 2617312..2618679 1 NC_007954.1 membrane-fusion protein 2618679 4018697 Sden_2205 Shewanella denitrificans OS217 membrane-fusion protein YP_563209.1 2617312 D 318161 CDS YP_563210.1 91793559 4018698 2618676..2621867 1 NC_007954.1 acriflavin resistance protein 2621867 4018698 Sden_2206 Shewanella denitrificans OS217 acriflavin resistance protein YP_563210.1 2618676 D 318161 CDS YP_563211.1 91793560 4018699 complement(2621957..2622310) 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 2622310 4018699 Sden_2207 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_563211.1 2621957 R 318161 CDS YP_563212.1 91793561 4018700 2622581..2623669 1 NC_007954.1 zinc carboxypeptidase-related protein 2623669 4018700 Sden_2208 Shewanella denitrificans OS217 zinc carboxypeptidase-related protein YP_563212.1 2622581 D 318161 CDS YP_563213.1 91793562 4018701 complement(2624100..2625218) 1 NC_007954.1 hypothetical protein 2625218 4018701 Sden_2209 Shewanella denitrificans OS217 hypothetical protein YP_563213.1 2624100 R 318161 CDS YP_563214.1 91793563 4018702 2625502..2627154 1 NC_007954.1 FAD dependent oxidoreductase 2627154 4018702 Sden_2210 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_563214.1 2625502 D 318161 CDS YP_563215.1 91793564 4018704 complement(2627639..2627971) 1 NC_007954.1 hypothetical protein 2627971 4018704 Sden_2212 Shewanella denitrificans OS217 hypothetical protein YP_563215.1 2627639 R 318161 CDS YP_563216.1 91793565 4018705 complement(2628623..2629189) 1 NC_007954.1 hypothetical protein 2629189 4018705 Sden_2213 Shewanella denitrificans OS217 hypothetical protein YP_563216.1 2628623 R 318161 CDS YP_563217.1 91793566 4018706 complement(2629509..2630111) 1 NC_007954.1 hypothetical protein 2630111 4018706 Sden_2214 Shewanella denitrificans OS217 hypothetical protein YP_563217.1 2629509 R 318161 CDS YP_563218.1 91793567 4018707 complement(2630687..2631229) 1 NC_007954.1 NosL 2631229 4018707 Sden_2215 Shewanella denitrificans OS217 NosL YP_563218.1 2630687 R 318161 CDS YP_563219.1 91793568 4018708 complement(2631369..2632187) 1 NC_007954.1 nitrous oxide metabolic protein 2632187 4018708 Sden_2216 Shewanella denitrificans OS217 nitrous oxide metabolic protein YP_563219.1 2631369 R 318161 CDS YP_563220.1 91793569 4018709 complement(2632184..2633167) 1 NC_007954.1 ABC transporter related 2633167 4018709 Sden_2217 Shewanella denitrificans OS217 ABC transporter related YP_563220.1 2632184 R 318161 CDS YP_563221.1 91793570 4018710 complement(2633164..2634615) 1 NC_007954.1 periplasmic copper-binding 2634615 4018710 Sden_2218 Shewanella denitrificans OS217 periplasmic copper-binding YP_563221.1 2633164 R 318161 CDS YP_563222.1 91793571 4018711 complement(2634821..2636707) 1 NC_007954.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 2636707 4018711 Sden_2219 Shewanella denitrificans OS217 nitrous-oxide reductase YP_563222.1 2634821 R 318161 CDS YP_563223.1 91793572 4018712 complement(2636787..2638937) 1 NC_007954.1 FMN-binding 2638937 4018712 Sden_2220 Shewanella denitrificans OS217 FMN-binding YP_563223.1 2636787 R 318161 CDS YP_563224.1 91793573 4018713 complement(2639271..2639558) 1 NC_007954.1 hypothetical protein 2639558 4018713 Sden_2221 Shewanella denitrificans OS217 hypothetical protein YP_563224.1 2639271 R 318161 CDS YP_563225.1 91793574 4018714 complement(2639635..2640162) 1 NC_007954.1 hypothetical protein 2640162 4018714 Sden_2222 Shewanella denitrificans OS217 hypothetical protein YP_563225.1 2639635 R 318161 CDS YP_563226.1 91793575 4018715 complement(2640372..2642648) 1 NC_007954.1 twin-arginine translocation pathway signal 2642648 4018715 Sden_2223 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_563226.1 2640372 R 318161 CDS YP_563227.1 91793576 4018716 complement(2642651..2643103) 1 NC_007954.1 (2Fe-2S)-binding 2643103 4018716 Sden_2224 Shewanella denitrificans OS217 (2Fe-2S)-binding YP_563227.1 2642651 R 318161 CDS YP_563228.1 91793577 4018717 complement(2643215..2643922) 1 NC_007954.1 hypothetical protein 2643922 4018717 Sden_2225 Shewanella denitrificans OS217 hypothetical protein YP_563228.1 2643215 R 318161 CDS YP_563229.1 91793578 4018718 complement(2643913..2644962) 1 NC_007954.1 hypothetical protein 2644962 4018718 Sden_2226 Shewanella denitrificans OS217 hypothetical protein YP_563229.1 2643913 R 318161 CDS YP_563230.1 91793579 4018719 2645211..2646500 1 NC_007954.1 alpha/beta hydrolase fold 2646500 4018719 Sden_2227 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_563230.1 2645211 D 318161 CDS YP_563231.1 91793580 4018720 complement(2646613..2649879) 1 NC_007954.1 SNF2-related 2649879 4018720 Sden_2228 Shewanella denitrificans OS217 SNF2-related YP_563231.1 2646613 R 318161 CDS YP_563232.1 91793581 4018721 complement(2650060..2651208) 1 NC_007954.1 porin 2651208 4018721 Sden_2229 Shewanella denitrificans OS217 porin YP_563232.1 2650060 R 318161 CDS YP_563233.1 91793582 4018722 complement(2651541..2652581) 1 NC_007954.1 cation diffusion facilitator family transporter 2652581 4018722 Sden_2230 Shewanella denitrificans OS217 cation diffusion facilitator family transporter YP_563233.1 2651541 R 318161 CDS YP_563234.1 91793583 4018723 2652658..2652933 1 NC_007954.1 hypothetical protein 2652933 4018723 Sden_2231 Shewanella denitrificans OS217 hypothetical protein YP_563234.1 2652658 D 318161 CDS YP_563235.1 91793584 4018724 2653065..2653658 1 NC_007954.1 lysine exporter protein LysE/YggA 2653658 4018724 Sden_2232 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_563235.1 2653065 D 318161 CDS YP_563236.1 91793585 4018725 2653666..2654289 1 NC_007954.1 hypothetical protein 2654289 4018725 Sden_2233 Shewanella denitrificans OS217 hypothetical protein YP_563236.1 2653666 D 318161 CDS YP_563237.1 91793586 4018726 complement(2654373..2655125) 1 NC_007954.1 hypothetical protein 2655125 4018726 Sden_2234 Shewanella denitrificans OS217 hypothetical protein YP_563237.1 2654373 R 318161 CDS YP_563238.1 91793587 4018727 2655357..2656295 1 NC_007954.1 hypothetical protein 2656295 4018727 Sden_2235 Shewanella denitrificans OS217 hypothetical protein YP_563238.1 2655357 D 318161 CDS YP_563239.1 91793588 4018728 complement(2656286..2656765) 1 NC_007954.1 hypothetical protein 2656765 4018728 Sden_2236 Shewanella denitrificans OS217 hypothetical protein YP_563239.1 2656286 R 318161 CDS YP_563240.1 91793589 4018729 complement(2656946..2657266) 1 NC_007954.1 antibiotic biosynthesis monooxygenase 2657266 4018729 Sden_2237 Shewanella denitrificans OS217 antibiotic biosynthesis monooxygenase YP_563240.1 2656946 R 318161 CDS YP_563241.1 91793590 4018730 complement(2657328..2658113) 1 NC_007954.1 methyltransferase type 12 2658113 4018730 Sden_2238 Shewanella denitrificans OS217 methyltransferase type 12 YP_563241.1 2657328 R 318161 CDS YP_563242.1 91793591 4018731 complement(2658235..2660181) 1 NC_007954.1 chemotaxis sensory transducer 2660181 4018731 Sden_2239 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_563242.1 2658235 R 318161 CDS YP_563243.1 91793592 4018732 complement(2660425..2661993) 1 NC_007954.1 ABC transporter related 2661993 4018732 Sden_2240 Shewanella denitrificans OS217 ABC transporter related YP_563243.1 2660425 R 318161 CDS YP_563244.1 91793593 4018733 complement(2662326..2663255) 1 NC_007954.1 LysR, substrate-binding 2663255 4018733 Sden_2241 Shewanella denitrificans OS217 LysR, substrate-binding YP_563244.1 2662326 R 318161 CDS YP_563245.1 91793594 4018734 2663382..2664326 1 NC_007954.1 alcohol dehydrogenase GroES-like protein 2664326 4018734 Sden_2242 Shewanella denitrificans OS217 alcohol dehydrogenase GroES-like protein YP_563245.1 2663382 D 318161 CDS YP_563246.1 91793595 4018735 2664587..2664985 1 NC_007954.1 hypothetical protein 2664985 4018735 Sden_2243 Shewanella denitrificans OS217 hypothetical protein YP_563246.1 2664587 D 318161 CDS YP_563247.1 91793596 4018736 2665287..2665694 1 NC_007954.1 regulatory protein, MerR 2665694 4018736 Sden_2244 Shewanella denitrificans OS217 regulatory protein, MerR YP_563247.1 2665287 D 318161 CDS YP_563248.1 91793597 4018737 2665915..2667084 1 NC_007954.1 acyl-CoA dehydrogenase-like protein 2667084 4018737 Sden_2245 Shewanella denitrificans OS217 acyl-CoA dehydrogenase-like protein YP_563248.1 2665915 D 318161 CDS YP_563249.1 91793598 4018738 2667096..2668754 1 NC_007954.1 propionyl-CoA carboxylase 2668754 4018738 Sden_2246 Shewanella denitrificans OS217 propionyl-CoA carboxylase YP_563249.1 2667096 D 318161 CDS YP_563250.1 91793599 4018739 2668801..2669619 1 NC_007954.1 enoyl-CoA hydratase/isomerase 2669619 4018739 Sden_2247 Shewanella denitrificans OS217 enoyl-CoA hydratase/isomerase YP_563250.1 2668801 D 318161 CDS YP_563251.1 91793600 4018740 2669619..2671712 1 NC_007954.1 carbamoyl-phosphate synthase L chain, ATP-binding 2671712 4018740 Sden_2248 Shewanella denitrificans OS217 carbamoyl-phosphate synthase L chain, ATP-binding YP_563251.1 2669619 D 318161 CDS YP_563252.1 91793601 4018741 2671713..2671868 1 NC_007954.1 3-methylcrotonyl-CoA carboxylase alpha subunit 2671868 4018741 Sden_2249 Shewanella denitrificans OS217 3-methylcrotonyl-CoA carboxylase alpha subunit YP_563252.1 2671713 D 318161 CDS YP_563253.1 91793602 4018742 2671869..2672756 1 NC_007954.1 hydroxymethylglutaryl-CoA lyase 2672756 4018742 Sden_2250 Shewanella denitrificans OS217 hydroxymethylglutaryl-CoA lyase YP_563253.1 2671869 D 318161 CDS YP_563254.1 91793603 4018743 2672853..2673566 1 NC_007954.1 3-oxoacid CoA-transferase, subunit A 2673566 4018743 Sden_2251 Shewanella denitrificans OS217 3-oxoacid CoA-transferase, subunit A YP_563254.1 2672853 D 318161 CDS YP_563255.1 91793604 4018744 2673578..2674234 1 NC_007954.1 3-oxoacid CoA-transferase, subunit B 2674234 4018744 Sden_2252 Shewanella denitrificans OS217 3-oxoacid CoA-transferase, subunit B YP_563255.1 2673578 D 318161 CDS YP_563256.1 91793605 4018745 2675074..2675649 1 NC_007954.1 hypothetical protein 2675649 4018745 Sden_2253 Shewanella denitrificans OS217 hypothetical protein YP_563256.1 2675074 D 318161 CDS YP_563257.1 91793606 4018746 2676068..2677270 1 NC_007954.1 transposase, IS4 2677270 4018746 Sden_2254 Shewanella denitrificans OS217 transposase, IS4 YP_563257.1 2676068 D 318161 CDS YP_563258.1 91793607 4018747 2677350..2677697 1 NC_007954.1 hypothetical protein 2677697 4018747 Sden_2255 Shewanella denitrificans OS217 hypothetical protein YP_563258.1 2677350 D 318161 CDS YP_563259.1 91793608 4018748 complement(2678882..2678995) 1 NC_007954.1 hypothetical protein 2678995 4018748 Sden_2256 Shewanella denitrificans OS217 hypothetical protein YP_563259.1 2678882 R 318161 CDS YP_563260.1 91793609 4018749 complement(2679596..2679769) 1 NC_007954.1 hypothetical protein 2679769 4018749 Sden_2257 Shewanella denitrificans OS217 hypothetical protein YP_563260.1 2679596 R 318161 CDS YP_563261.1 91793610 4018750 complement(2680187..2681512) 1 NC_007954.1 Aerolysin/hemolysin/leukocidin toxin 2681512 4018750 Sden_2258 Shewanella denitrificans OS217 Aerolysin/hemolysin/leukocidin toxin YP_563261.1 2680187 R 318161 CDS YP_563262.1 91793611 4018751 complement(2682010..2682177) 1 NC_007954.1 hypothetical protein 2682177 4018751 Sden_2259 Shewanella denitrificans OS217 hypothetical protein YP_563262.1 2682010 R 318161 CDS YP_563263.1 91793612 4018752 complement(2682155..2682859) 1 NC_007954.1 lipoprotein 2682859 4018752 Sden_2260 Shewanella denitrificans OS217 lipoprotein YP_563263.1 2682155 R 318161 CDS YP_563264.1 91793613 4018753 2683199..2683711 1 NC_007954.1 hypothetical protein 2683711 4018753 Sden_2261 Shewanella denitrificans OS217 hypothetical protein YP_563264.1 2683199 D 318161 CDS YP_563265.1 91793614 4018754 complement(2684102..2685043) 1 NC_007954.1 integrase catalytic subunit 2685043 4018754 Sden_2262 Shewanella denitrificans OS217 integrase catalytic subunit YP_563265.1 2684102 R 318161 CDS YP_563266.1 91793615 4018755 complement(2685466..2686290) 1 NC_007954.1 hypothetical protein 2686290 4018755 Sden_2263 Shewanella denitrificans OS217 hypothetical protein YP_563266.1 2685466 R 318161 CDS YP_563267.1 91793616 4018756 2686653..2688035 1 NC_007954.1 hypothetical protein 2688035 4018756 Sden_2264 Shewanella denitrificans OS217 hypothetical protein YP_563267.1 2686653 D 318161 CDS YP_563268.1 91793617 4018757 2688633..2689874 1 NC_007954.1 hypothetical protein 2689874 4018757 Sden_2265 Shewanella denitrificans OS217 hypothetical protein YP_563268.1 2688633 D 318161 CDS YP_563269.1 91793618 4018758 2689861..2691729 1 NC_007954.1 TPR repeat-containing protein 2691729 4018758 Sden_2266 Shewanella denitrificans OS217 TPR repeat-containing protein YP_563269.1 2689861 D 318161 CDS YP_563270.1 91793619 4018759 2691891..2692337 1 NC_007954.1 hypothetical protein 2692337 4018759 Sden_2267 Shewanella denitrificans OS217 hypothetical protein YP_563270.1 2691891 D 318161 CDS YP_563271.1 91793620 4018760 complement(2692446..2692925) 1 NC_007954.1 regulatory protein, MarR 2692925 4018760 Sden_2268 Shewanella denitrificans OS217 regulatory protein, MarR YP_563271.1 2692446 R 318161 CDS YP_563272.1 91793621 4018761 2693192..2693914 1 NC_007954.1 methyltransferase type 11 2693914 4018761 Sden_2269 Shewanella denitrificans OS217 methyltransferase type 11 YP_563272.1 2693192 D 318161 CDS YP_563273.1 91793622 4018762 2693999..2694430 1 NC_007954.1 hypothetical protein 2694430 4018762 Sden_2270 Shewanella denitrificans OS217 hypothetical protein YP_563273.1 2693999 D 318161 CDS YP_563274.1 91793623 4018763 2694514..2695101 1 NC_007954.1 GCN5-related N-acetyltransferase 2695101 4018763 Sden_2271 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563274.1 2694514 D 318161 CDS YP_563275.1 91793624 4018764 complement(2695240..2698068) 1 NC_007954.1 endonuclease/exonuclease/phosphatase 2698068 4018764 Sden_2272 Shewanella denitrificans OS217 endonuclease/exonuclease/phosphatase YP_563275.1 2695240 R 318161 CDS YP_563276.1 91793625 4018765 complement(2698338..2699288) 1 NC_007954.1 hypothetical protein 2699288 4018765 Sden_2273 Shewanella denitrificans OS217 hypothetical protein YP_563276.1 2698338 R 318161 CDS YP_563277.1 91793626 4018766 complement(2699328..2699678) 1 NC_007954.1 hypothetical protein 2699678 4018766 Sden_2274 Shewanella denitrificans OS217 hypothetical protein YP_563277.1 2699328 R 318161 CDS YP_563278.1 91793627 4018767 complement(2699715..2700356) 1 NC_007954.1 YceI 2700356 4018767 Sden_2275 Shewanella denitrificans OS217 YceI YP_563278.1 2699715 R 318161 CDS YP_563279.1 91793628 4018768 complement(2700413..2700880) 1 NC_007954.1 hypothetical protein 2700880 4018768 Sden_2276 Shewanella denitrificans OS217 hypothetical protein YP_563279.1 2700413 R 318161 CDS YP_563280.1 91793629 4018769 complement(2700884..2701522) 1 NC_007954.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2701522 4018769 Sden_2277 Shewanella denitrificans OS217 pyridoxamine 5'-phosphate oxidase YP_563280.1 2700884 R 318161 CDS YP_563281.1 91793630 4018770 complement(2701635..2702567) 1 NC_007954.1 catalyzes the formation of putrescine from agmatine; agmatinase 2702567 4018770 Sden_2278 Shewanella denitrificans OS217 agmatinase YP_563281.1 2701635 R 318161 CDS YP_563282.1 91793631 4018771 complement(2702597..2703532) 1 NC_007954.1 adenosylmethionine decarboxylase 2703532 4018771 Sden_2279 Shewanella denitrificans OS217 adenosylmethionine decarboxylase YP_563282.1 2702597 R 318161 CDS YP_563283.1 91793632 4018772 complement(2703707..2705617) 1 NC_007954.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2705617 4018772 Sden_2280 Shewanella denitrificans OS217 arginine decarboxylase YP_563283.1 2703707 R 318161 CDS YP_563284.1 91793633 4018773 2706409..2707242 1 NC_007954.1 hypothetical protein 2707242 4018773 Sden_2281 Shewanella denitrificans OS217 hypothetical protein YP_563284.1 2706409 D 318161 CDS YP_563285.1 91793634 4018774 2707294..2708025 1 NC_007954.1 hypothetical protein 2708025 4018774 Sden_2282 Shewanella denitrificans OS217 hypothetical protein YP_563285.1 2707294 D 318161 CDS YP_563286.1 91793635 4018775 2708108..2708941 1 NC_007954.1 hypothetical protein 2708941 4018775 Sden_2283 Shewanella denitrificans OS217 hypothetical protein YP_563286.1 2708108 D 318161 CDS YP_563287.1 91793636 4018776 2708938..2709834 1 NC_007954.1 ABC transporter related 2709834 4018776 Sden_2284 Shewanella denitrificans OS217 ABC transporter related YP_563287.1 2708938 D 318161 CDS YP_563288.1 91793637 4018777 complement(2710110..2710319) 1 NC_007954.1 cold-shock protein, DNA-binding 2710319 4018777 Sden_2285 Shewanella denitrificans OS217 cold-shock protein, DNA-binding YP_563288.1 2710110 R 318161 CDS YP_563289.1 91793638 4018778 complement(2710683..2711531) 1 NC_007954.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2711531 rrmA 4018778 rrmA Shewanella denitrificans OS217 23S rRNA methyltransferase A YP_563289.1 2710683 R 318161 CDS YP_563290.1 91793639 4018779 2711732..2713144 1 NC_007954.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2713144 sbcB 4018779 sbcB Shewanella denitrificans OS217 exonuclease I YP_563290.1 2711732 D 318161 CDS YP_563291.1 91793640 4018780 2713197..2714090 1 NC_007954.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2714090 4018780 Sden_2288 Shewanella denitrificans OS217 cytidine deaminase YP_563291.1 2713197 D 318161 CDS YP_563292.1 91793641 4018781 complement(2714189..2715061) 1 NC_007954.1 2-hydroxy-3-oxopropionate reductase 2715061 4018781 Sden_2289 Shewanella denitrificans OS217 2-hydroxy-3-oxopropionate reductase YP_563292.1 2714189 R 318161 CDS YP_563293.1 91793642 4018782 complement(2715079..2715564) 1 NC_007954.1 thioesterase superfamily protein 2715564 4018782 Sden_2290 Shewanella denitrificans OS217 thioesterase superfamily protein YP_563293.1 2715079 R 318161 CDS YP_563294.1 91793643 4018783 complement(2715705..2716949) 1 NC_007954.1 beta-ketoacyl synthase 2716949 4018783 Sden_2291 Shewanella denitrificans OS217 beta-ketoacyl synthase YP_563294.1 2715705 R 318161 CDS YP_563295.1 91793644 4018784 complement(2717168..2717401) 1 NC_007954.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2717401 acpP 4018784 acpP Shewanella denitrificans OS217 acyl carrier protein YP_563295.1 2717168 R 318161 CDS YP_563296.1 91793645 4018785 complement(2717564..2718310) 1 NC_007954.1 3-oxoacyl-ACP reductase 2718310 4018785 Sden_2293 Shewanella denitrificans OS217 3-oxoacyl-ACP reductase YP_563296.1 2717564 R 318161 CDS YP_563297.1 91793646 4018786 complement(2718320..2719246) 1 NC_007954.1 malonyl CoA-ACP transacylase 2719246 4018786 Sden_2294 Shewanella denitrificans OS217 malonyl CoA-ACP transacylase YP_563297.1 2718320 R 318161 CDS YP_563298.1 91793647 4018787 complement(2719389..2720348) 1 NC_007954.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2720348 4018787 Sden_2295 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_563298.1 2719389 R 318161 CDS YP_563299.1 91793648 4018788 complement(2720357..2721388) 1 NC_007954.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2721388 4018788 Sden_2296 Shewanella denitrificans OS217 glycerol-3-phosphate acyltransferase PlsX YP_563299.1 2720357 R 318161 CDS YP_563300.1 91793649 4018789 complement(2721403..2721573) 1 NC_007954.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2721573 rpmF 4018789 rpmF Shewanella denitrificans OS217 50S ribosomal protein L32 YP_563300.1 2721403 R 318161 CDS YP_563301.1 91793650 4018790 complement(2721591..2722115) 1 NC_007954.1 hypothetical protein 2722115 4018790 Sden_2298 Shewanella denitrificans OS217 hypothetical protein YP_563301.1 2721591 R 318161 CDS YP_563302.1 91793651 4018791 2722354..2722974 1 NC_007954.1 maf protein 2722974 4018791 Sden_2299 Shewanella denitrificans OS217 maf protein YP_563302.1 2722354 D 318161 CDS YP_563303.1 91793652 4018792 complement(2723095..2723742) 1 NC_007954.1 HAD family hydrolase 2723742 4018792 Sden_2300 Shewanella denitrificans OS217 HAD family hydrolase YP_563303.1 2723095 R 318161 CDS YP_563304.1 91793653 4018793 complement(2723744..2724700) 1 NC_007954.1 pseudouridine synthase, RluD 2724700 4018793 Sden_2301 Shewanella denitrificans OS217 pseudouridine synthase, RluD YP_563304.1 2723744 R 318161 CDS YP_563305.1 91793654 4018794 2725306..2728614 1 NC_007954.1 ribonuclease 2728614 4018794 Sden_2302 Shewanella denitrificans OS217 ribonuclease YP_563305.1 2725306 D 318161 CDS YP_563306.1 91793655 4018795 2728793..2730352 1 NC_007954.1 sulphate transporter 2730352 4018795 Sden_2303 Shewanella denitrificans OS217 sulphate transporter YP_563306.1 2728793 D 318161 CDS YP_563307.1 91793656 4018796 complement(2730463..2731368) 1 NC_007954.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2731368 4018796 Sden_2304 Shewanella denitrificans OS217 bifunctional methionine sulfoxide reductase B/A protein YP_563307.1 2730463 R 318161 CDS YP_563308.1 91793657 4018797 2731578..2732417 1 NC_007954.1 2OG-Fe(II) oxygenase 2732417 4018797 Sden_2305 Shewanella denitrificans OS217 2OG-Fe(II) oxygenase YP_563308.1 2731578 D 318161 CDS YP_563309.1 91793658 4018798 2732566..2733507 1 NC_007954.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2733507 rbgA 4018798 rbgA Shewanella denitrificans OS217 ribosomal biogenesis GTPase YP_563309.1 2732566 D 318161 CDS YP_563310.1 91793659 4018799 complement(2733608..2734093) 1 NC_007954.1 low molecular weight phosphotyrosine protein phosphatase 2734093 4018799 Sden_2307 Shewanella denitrificans OS217 low molecular weight phosphotyrosine protein phosphatase YP_563310.1 2733608 R 318161 CDS YP_563311.1 91793660 4018800 2734253..2734633 1 NC_007954.1 diacylglycerol kinase 2734633 4018800 Sden_2308 Shewanella denitrificans OS217 diacylglycerol kinase YP_563311.1 2734253 D 318161 CDS YP_563312.1 91793661 4018801 complement(2734677..2735516) 1 NC_007954.1 regulatory protein, LysR 2735516 4018801 Sden_2309 Shewanella denitrificans OS217 regulatory protein, LysR YP_563312.1 2734677 R 318161 CDS YP_563313.1 91793662 4018802 2735625..2736065 1 NC_007954.1 hypothetical protein 2736065 4018802 Sden_2310 Shewanella denitrificans OS217 hypothetical protein YP_563313.1 2735625 D 318161 CDS YP_563314.1 91793663 4018803 2736623..2737495 1 NC_007954.1 hypothetical protein 2737495 4018803 Sden_2311 Shewanella denitrificans OS217 hypothetical protein YP_563314.1 2736623 D 318161 CDS YP_563315.1 91793664 4018804 2737680..2738705 1 NC_007954.1 GGDEF domain-containing protein 2738705 4018804 Sden_2312 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563315.1 2737680 D 318161 CDS YP_563316.1 91793665 4018805 2738911..2740098 1 NC_007954.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2740098 4018805 Sden_2313 Shewanella denitrificans OS217 cystathionine beta-lyase YP_563316.1 2738911 D 318161 CDS YP_563317.1 91793666 4018806 2740374..2740619 1 NC_007954.1 hypothetical protein 2740619 4018806 Sden_2314 Shewanella denitrificans OS217 hypothetical protein YP_563317.1 2740374 D 318161 CDS YP_563318.1 91793667 4018807 complement(2740716..2741264) 1 NC_007954.1 nitroreductase 2741264 4018807 Sden_2315 Shewanella denitrificans OS217 nitroreductase YP_563318.1 2740716 R 318161 CDS YP_563319.1 91793668 4018808 complement(2741351..2741941) 1 NC_007954.1 DoxX 2741941 4018808 Sden_2316 Shewanella denitrificans OS217 DoxX YP_563319.1 2741351 R 318161 CDS YP_563320.1 91793669 4018809 complement(2742145..2742996) 1 NC_007954.1 hypothetical protein 2742996 4018809 Sden_2317 Shewanella denitrificans OS217 hypothetical protein YP_563320.1 2742145 R 318161 CDS YP_563321.1 91793670 4018810 complement(2743076..2744146) 1 NC_007954.1 aminoglycoside phosphotransferase 2744146 4018810 Sden_2318 Shewanella denitrificans OS217 aminoglycoside phosphotransferase YP_563321.1 2743076 R 318161 CDS YP_563322.1 91793671 4018811 complement(2744149..2744829) 1 NC_007954.1 nicotinamide mononucleotide transporter 2744829 4018811 Sden_2319 Shewanella denitrificans OS217 nicotinamide mononucleotide transporter YP_563322.1 2744149 R 318161 CDS YP_563323.1 91793672 4018812 complement(2744867..2745163) 1 NC_007954.1 hypothetical protein 2745163 4018812 Sden_2320 Shewanella denitrificans OS217 hypothetical protein YP_563323.1 2744867 R 318161 CDS YP_563324.1 91793673 4018813 complement(2745197..2747431) 1 NC_007954.1 TonB-dependent receptor 2747431 4018813 Sden_2321 Shewanella denitrificans OS217 TonB-dependent receptor YP_563324.1 2745197 R 318161 CDS YP_563325.1 91793674 4018815 complement(2747658..2748068) 1 NC_007954.1 hypothetical protein 2748068 4018815 Sden_2322 Shewanella denitrificans OS217 hypothetical protein YP_563325.1 2747658 R 318161 CDS YP_563326.1 91793675 4018816 complement(2748196..2748639) 1 NC_007954.1 thioesterase superfamily protein 2748639 4018816 Sden_2323 Shewanella denitrificans OS217 thioesterase superfamily protein YP_563326.1 2748196 R 318161 CDS YP_563327.1 91793676 4018817 complement(2748632..2749174) 1 NC_007954.1 phenylacetic acid degradation-related protein 2749174 4018817 Sden_2324 Shewanella denitrificans OS217 phenylacetic acid degradation-related protein YP_563327.1 2748632 R 318161 CDS YP_563328.1 91793677 4018818 complement(2749224..2749577) 1 NC_007954.1 histidine triad (HIT) protein 2749577 4018818 Sden_2325 Shewanella denitrificans OS217 histidine triad (HIT) protein YP_563328.1 2749224 R 318161 CDS YP_563329.1 91793678 4018819 2749757..2751532 1 NC_007954.1 peptidase M61 2751532 4018819 Sden_2326 Shewanella denitrificans OS217 peptidase M61 YP_563329.1 2749757 D 318161 CDS YP_563330.1 91793679 4018820 complement(2751679..2752311) 1 NC_007954.1 regulatory protein, LuxR 2752311 4018820 Sden_2327 Shewanella denitrificans OS217 regulatory protein, LuxR YP_563330.1 2751679 R 318161 CDS YP_563331.1 91793680 4018821 complement(2752850..2755537) 1 NC_007954.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2755537 4018821 Sden_2328 Shewanella denitrificans OS217 DNA topoisomerase I YP_563331.1 2752850 R 318161 CDS YP_563332.1 91793681 4018822 2755885..2757219 1 NC_007954.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2757219 4018822 Sden_2329 Shewanella denitrificans OS217 succinylarginine dihydrolase YP_563332.1 2755885 D 318161 CDS YP_563333.1 91793682 4018823 complement(2757293..2759749) 1 NC_007954.1 Ig-like, group 1 2759749 4018823 Sden_2330 Shewanella denitrificans OS217 Ig-like, group 1 YP_563333.1 2757293 R 318161 CDS YP_563334.1 91793683 4018824 2759975..2761291 1 NC_007954.1 sodium:dicarboxylate symporter 2761291 4018824 Sden_2331 Shewanella denitrificans OS217 sodium:dicarboxylate symporter YP_563334.1 2759975 D 318161 CDS YP_563335.1 91793684 4018825 complement(2761388..2762080) 1 NC_007954.1 2OG-Fe(II) oxygenase 2762080 4018825 Sden_2332 Shewanella denitrificans OS217 2OG-Fe(II) oxygenase YP_563335.1 2761388 R 318161 CDS YP_563336.1 91793685 4018826 2762213..2763493 1 NC_007954.1 hypothetical protein 2763493 4018826 Sden_2333 Shewanella denitrificans OS217 hypothetical protein YP_563336.1 2762213 D 318161 CDS YP_563337.1 91793686 4018827 complement(2763611..2764558) 1 NC_007954.1 magnesium and cobalt transport protein CorA 2764558 4018827 Sden_2334 Shewanella denitrificans OS217 magnesium and cobalt transport protein CorA YP_563337.1 2763611 R 318161 CDS YP_563338.1 91793687 4018828 complement(2764763..2765788) 1 NC_007954.1 nucleoid-associated protein NdpA 2765788 4018828 Sden_2335 Shewanella denitrificans OS217 nucleoid-associated protein NdpA YP_563338.1 2764763 R 318161 CDS YP_563339.1 91793688 4018829 2765865..2766077 1 NC_007954.1 hypothetical protein 2766077 4018829 Sden_2336 Shewanella denitrificans OS217 hypothetical protein YP_563339.1 2765865 D 318161 CDS YP_563340.1 91793689 4018830 2766148..2767962 1 NC_007954.1 sulfatase 2767962 4018830 Sden_2337 Shewanella denitrificans OS217 sulfatase YP_563340.1 2766148 D 318161 CDS YP_563341.1 91793690 4018832 complement(2768302..2770140) 1 NC_007954.1 sigma-54 factor, interaction region 2770140 4018832 Sden_2338 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563341.1 2768302 R 318161 CDS YP_563342.1 91793691 4018833 2770374..2771894 1 NC_007954.1 aldehyde dehydrogenase 2771894 4018833 Sden_2339 Shewanella denitrificans OS217 aldehyde dehydrogenase YP_563342.1 2770374 D 318161 CDS YP_563343.1 91793692 4018834 complement(2772009..2773052) 1 NC_007954.1 chromosome segregation ATPase 2773052 4018834 Sden_2340 Shewanella denitrificans OS217 chromosome segregation ATPase YP_563343.1 2772009 R 318161 CDS YP_563344.1 91793693 4018835 complement(2773240..2774667) 1 NC_007954.1 endonuclease/exonuclease/phosphatase 2774667 4018835 Sden_2341 Shewanella denitrificans OS217 endonuclease/exonuclease/phosphatase YP_563344.1 2773240 R 318161 CDS YP_563345.1 91793694 4018836 2774895..2777996 1 NC_007954.1 ATP-binding region, ATPase-like protein 2777996 4018836 Sden_2342 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_563345.1 2774895 D 318161 CDS YP_563346.1 91793695 4018837 2777998..2779320 1 NC_007954.1 response regulator receiver 2779320 4018837 Sden_2343 Shewanella denitrificans OS217 response regulator receiver YP_563346.1 2777998 D 318161 CDS YP_563347.1 91793696 4018838 complement(2779297..2779908) 1 NC_007954.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 2779908 4018838 Sden_2344 Shewanella denitrificans OS217 sulfite oxidase subunit YedZ YP_563347.1 2779297 R 318161 CDS YP_563348.1 91793697 4018839 complement(2779908..2780951) 1 NC_007954.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 2780951 4018839 Sden_2345 Shewanella denitrificans OS217 sulfite oxidase subunit YedY YP_563348.1 2779908 R 318161 CDS YP_563349.1 91793698 4018840 2781220..2782788 1 NC_007954.1 hypothetical protein 2782788 4018840 Sden_2346 Shewanella denitrificans OS217 hypothetical protein YP_563349.1 2781220 D 318161 CDS YP_563350.1 91793699 4018841 2782875..2784797 1 NC_007954.1 lytic transglycosylase, catalytic 2784797 4018841 Sden_2347 Shewanella denitrificans OS217 lytic transglycosylase, catalytic YP_563350.1 2782875 D 318161 CDS YP_563351.1 91793700 4018842 2784931..2785878 1 NC_007954.1 ATPase 2785878 4018842 Sden_2348 Shewanella denitrificans OS217 ATPase YP_563351.1 2784931 D 318161 CDS YP_563352.1 91793701 4018843 2785930..2787183 1 NC_007954.1 hypothetical protein 2787183 4018843 Sden_2349 Shewanella denitrificans OS217 hypothetical protein YP_563352.1 2785930 D 318161 CDS YP_563353.1 91793702 4018844 2787173..2789365 1 NC_007954.1 transglutaminase-like protein 2789365 4018844 Sden_2350 Shewanella denitrificans OS217 transglutaminase-like protein YP_563353.1 2787173 D 318161 CDS YP_563354.1 91793703 4018845 2789466..2793593 1 NC_007954.1 exodeoxyribonuclease V, gamma subunit 2793593 4018845 Sden_2351 Shewanella denitrificans OS217 exodeoxyribonuclease V, gamma subunit YP_563354.1 2789466 D 318161 CDS YP_563355.1 91793704 4018846 2793586..2797653 1 NC_007954.1 exodeoxyribonuclease V, beta subunit 2797653 4018846 Sden_2352 Shewanella denitrificans OS217 exodeoxyribonuclease V, beta subunit YP_563355.1 2793586 D 318161 CDS YP_563356.1 91793705 4018847 2797650..2799953 1 NC_007954.1 exodeoxyribonuclease V, alpha subunit 2799953 4018847 Sden_2353 Shewanella denitrificans OS217 exodeoxyribonuclease V, alpha subunit YP_563356.1 2797650 D 318161 CDS YP_563357.1 91793706 4018848 2800113..2801120 1 NC_007954.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2801120 ddl 4018848 ddl Shewanella denitrificans OS217 D-alanyl-alanine synthetase A YP_563357.1 2800113 D 318161 CDS YP_563358.1 91793707 4018849 2801416..2801721 1 NC_007954.1 hypothetical protein 2801721 4018849 Sden_2355 Shewanella denitrificans OS217 hypothetical protein YP_563358.1 2801416 D 318161 CDS YP_563359.1 91793708 4018850 2801829..2803553 1 NC_007954.1 PepSY-associated TM helix 2803553 4018850 Sden_2356 Shewanella denitrificans OS217 PepSY-associated TM helix YP_563359.1 2801829 D 318161 CDS YP_563360.1 91793709 4018851 2803555..2803881 1 NC_007954.1 hypothetical protein 2803881 4018851 Sden_2357 Shewanella denitrificans OS217 hypothetical protein YP_563360.1 2803555 D 318161 CDS YP_563361.1 91793710 4018852 2805202..2807769 1 NC_007954.1 peptidase M1, membrane alanine aminopeptidase 2807769 4018852 Sden_2358 Shewanella denitrificans OS217 peptidase M1, membrane alanine aminopeptidase YP_563361.1 2805202 D 318161 CDS YP_563362.1 91793711 4018853 complement(2809286..2810203) 1 NC_007954.1 hypothetical protein 2810203 4018853 Sden_2359 Shewanella denitrificans OS217 hypothetical protein YP_563362.1 2809286 R 318161 CDS YP_563363.1 91793712 4018854 complement(2810299..2811519) 1 NC_007954.1 hypothetical protein 2811519 4018854 Sden_2360 Shewanella denitrificans OS217 hypothetical protein YP_563363.1 2810299 R 318161 CDS YP_563364.1 91793713 4018855 2811591..2811959 1 NC_007954.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2811959 folX 4018855 folX Shewanella denitrificans OS217 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_563364.1 2811591 D 318161 CDS YP_563365.1 91793714 4018856 2812051..2812944 1 NC_007954.1 hypothetical protein 2812944 4018856 Sden_2362 Shewanella denitrificans OS217 hypothetical protein YP_563365.1 2812051 D 318161 CDS YP_563366.1 91793715 4018857 2813040..2813789 1 NC_007954.1 lysine exporter protein LysE/YggA 2813789 4018857 Sden_2363 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_563366.1 2813040 D 318161 CDS YP_563367.1 91793716 4018858 complement(2813842..2814756) 1 NC_007954.1 regulatory protein, LysR 2814756 4018858 Sden_2364 Shewanella denitrificans OS217 regulatory protein, LysR YP_563367.1 2813842 R 318161 CDS YP_563368.1 91793717 4018859 2814951..2815463 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 2815463 4018859 Sden_2365 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_563368.1 2814951 D 318161 CDS YP_563369.1 91793718 4018860 complement(2815608..2818091) 1 NC_007954.1 hypothetical protein 2818091 4018860 Sden_2366 Shewanella denitrificans OS217 hypothetical protein YP_563369.1 2815608 R 318161 CDS YP_563370.1 91793719 4018861 complement(2818091..2818840) 1 NC_007954.1 ABC transporter related 2818840 4018861 Sden_2367 Shewanella denitrificans OS217 ABC transporter related YP_563370.1 2818091 R 318161 CDS YP_563371.1 91793720 4018862 2818890..2819456 1 NC_007954.1 arylesterase 2819456 4018862 Sden_2368 Shewanella denitrificans OS217 arylesterase YP_563371.1 2818890 D 318161 CDS YP_563372.1 91793721 4018863 2819652..2820719 1 NC_007954.1 hypothetical protein 2820719 4018863 Sden_2369 Shewanella denitrificans OS217 hypothetical protein YP_563372.1 2819652 D 318161 CDS YP_563373.1 91793722 4018868 complement(2823055..2823297) 1 NC_007954.1 hypothetical protein 2823297 4018868 Sden_2370 Shewanella denitrificans OS217 hypothetical protein YP_563373.1 2823055 R 318161 CDS YP_563374.1 91793723 4018869 2823566..2825245 1 NC_007954.1 alkaline phosphatase 2825245 4018869 Sden_2371 Shewanella denitrificans OS217 alkaline phosphatase YP_563374.1 2823566 D 318161 CDS YP_563375.1 91793724 4018870 2825558..2826028 1 NC_007954.1 hypothetical protein 2826028 4018870 Sden_2372 Shewanella denitrificans OS217 hypothetical protein YP_563375.1 2825558 D 318161 CDS YP_563376.1 91793725 4018871 2826194..2826400 1 NC_007954.1 hypothetical protein 2826400 4018871 Sden_2373 Shewanella denitrificans OS217 hypothetical protein YP_563376.1 2826194 D 318161 CDS YP_563377.1 91793726 4018872 complement(2826465..2827994) 1 NC_007954.1 MATE efflux family protein 2827994 4018872 Sden_2374 Shewanella denitrificans OS217 MATE efflux family protein YP_563377.1 2826465 R 318161 CDS YP_563378.1 91793727 4018873 complement(2828032..2828862) 1 NC_007954.1 Ion transport protein 2828862 4018873 Sden_2375 Shewanella denitrificans OS217 Ion transport protein YP_563378.1 2828032 R 318161 CDS YP_563379.1 91793728 4018874 2829061..2829606 1 NC_007954.1 ErfK/YbiS/YcfS/YnhG 2829606 4018874 Sden_2376 Shewanella denitrificans OS217 ErfK/YbiS/YcfS/YnhG YP_563379.1 2829061 D 318161 CDS YP_563380.1 91793729 4018875 2829659..2830222 1 NC_007954.1 hypothetical protein 2830222 4018875 Sden_2377 Shewanella denitrificans OS217 hypothetical protein YP_563380.1 2829659 D 318161 CDS YP_563381.1 91793730 4018876 complement(2830260..2831108) 1 NC_007954.1 peptidase M23B 2831108 4018876 Sden_2378 Shewanella denitrificans OS217 peptidase M23B YP_563381.1 2830260 R 318161 CDS YP_563382.1 91793731 4018877 complement(2831197..2832084) 1 NC_007954.1 hypothetical protein 2832084 4018877 Sden_2379 Shewanella denitrificans OS217 hypothetical protein YP_563382.1 2831197 R 318161 CDS YP_563383.1 91793732 4018878 complement(2833280..2833612) 1 NC_007954.1 hypothetical protein 2833612 4018878 Sden_2380 Shewanella denitrificans OS217 hypothetical protein YP_563383.1 2833280 R 318161 CDS YP_563384.1 91793733 4018879 complement(2833696..2836461) 1 NC_007954.1 DNA polymerase III, subunits gamma and tau 2836461 4018879 Sden_2381 Shewanella denitrificans OS217 DNA polymerase III, subunits gamma and tau YP_563384.1 2833696 R 318161 CDS YP_563385.1 91793734 4018880 complement(2836602..2837159) 1 NC_007954.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2837159 4018880 Sden_2382 Shewanella denitrificans OS217 adenine phosphoribosyltransferase YP_563385.1 2836602 R 318161 CDS YP_563386.1 91793735 4018881 complement(2837329..2837709) 1 NC_007954.1 hypothetical protein 2837709 4018881 Sden_2383 Shewanella denitrificans OS217 hypothetical protein YP_563386.1 2837329 R 318161 CDS YP_563387.1 91793736 4018882 complement(2837802..2837921) 1 NC_007954.1 hypothetical protein 2837921 4018882 Sden_2384 Shewanella denitrificans OS217 hypothetical protein YP_563387.1 2837802 R 318161 CDS YP_563388.1 91793737 4018883 complement(2838124..2838867) 1 NC_007954.1 hypothetical protein 2838867 4018883 Sden_2385 Shewanella denitrificans OS217 hypothetical protein YP_563388.1 2838124 R 318161 CDS YP_563389.1 91793738 4018884 complement(2838864..2839733) 1 NC_007954.1 hypothetical protein 2839733 4018884 Sden_2386 Shewanella denitrificans OS217 hypothetical protein YP_563389.1 2838864 R 318161 CDS YP_563390.1 91793739 4018885 complement(2839860..2840222) 1 NC_007954.1 hypothetical protein 2840222 4018885 Sden_2387 Shewanella denitrificans OS217 hypothetical protein YP_563390.1 2839860 R 318161 CDS YP_563391.1 91793740 4018886 2840516..2841475 1 NC_007954.1 dihydrouridine synthase, DuS 2841475 4018886 Sden_2388 Shewanella denitrificans OS217 dihydrouridine synthase, DuS YP_563391.1 2840516 D 318161 CDS YP_563392.1 91793741 4018887 2841613..2842038 1 NC_007954.1 hypothetical protein 2842038 4018887 Sden_2389 Shewanella denitrificans OS217 hypothetical protein YP_563392.1 2841613 D 318161 CDS YP_563393.1 91793742 4018888 complement(2842195..2842626) 1 NC_007954.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2842626 ndk 4018888 ndk Shewanella denitrificans OS217 nucleoside diphosphate kinase YP_563393.1 2842195 R 318161 CDS YP_563394.1 91793743 4018889 2842969..2843370 1 NC_007954.1 cupin 2, barrel 2843370 4018889 Sden_2391 Shewanella denitrificans OS217 cupin 2, barrel YP_563394.1 2842969 D 318161 CDS YP_563395.1 91793744 4018890 complement(2844863..2845840) 1 NC_007954.1 hypothetical protein 2845840 4018890 Sden_2392 Shewanella denitrificans OS217 hypothetical protein YP_563395.1 2844863 R 318161 CDS YP_563396.1 91793745 4018891 complement(2846203..2846919) 1 NC_007954.1 hypothetical protein 2846919 4018891 Sden_2393 Shewanella denitrificans OS217 hypothetical protein YP_563396.1 2846203 R 318161 CDS YP_563397.1 91793746 4018892 complement(2847065..2847379) 1 NC_007954.1 hypothetical protein 2847379 4018892 Sden_2394 Shewanella denitrificans OS217 hypothetical protein YP_563397.1 2847065 R 318161 CDS YP_563398.1 91793747 4018893 complement(2847681..2848109) 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 2848109 4018893 Sden_2395 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_563398.1 2847681 R 318161 CDS YP_563399.1 91793748 4018894 complement(2848180..2849436) 1 NC_007954.1 transporter 2849436 4018894 Sden_2396 Shewanella denitrificans OS217 transporter YP_563399.1 2848180 R 318161 CDS YP_563400.1 91793749 4018895 complement(2849505..2850182) 1 NC_007954.1 regulatory protein, TetR 2850182 4018895 Sden_2397 Shewanella denitrificans OS217 regulatory protein, TetR YP_563400.1 2849505 R 318161 CDS YP_563401.1 91793750 4018896 complement(2850398..2851321) 1 NC_007954.1 S6 modification enzyme RimK 2851321 4018896 Sden_2398 Shewanella denitrificans OS217 S6 modification enzyme RimK YP_563401.1 2850398 R 318161 CDS YP_563402.1 91793751 4018897 2851770..2853023 1 NC_007954.1 metal-dependent phosphohydrolase 2853023 4018897 Sden_2399 Shewanella denitrificans OS217 metal-dependent phosphohydrolase YP_563402.1 2851770 D 318161 CDS YP_563403.1 91793752 4018898 complement(2853097..2855103) 1 NC_007954.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2855103 4018898 Sden_2400 Shewanella denitrificans OS217 DNA topoisomerase III YP_563403.1 2853097 R 318161 CDS YP_563404.1 91793753 4018899 complement(2855200..2856849) 1 NC_007954.1 peptidase M28 2856849 4018899 Sden_2401 Shewanella denitrificans OS217 peptidase M28 YP_563404.1 2855200 R 318161 CDS YP_563405.1 91793754 4018900 complement(2856926..2857150) 1 NC_007954.1 hypothetical protein 2857150 4018900 Sden_2402 Shewanella denitrificans OS217 hypothetical protein YP_563405.1 2856926 R 318161 CDS YP_563406.1 91793755 4018901 2857254..2858105 1 NC_007954.1 hypothetical protein 2858105 4018901 Sden_2403 Shewanella denitrificans OS217 hypothetical protein YP_563406.1 2857254 D 318161 CDS YP_563407.1 91793756 4018902 2858561..2861179 1 NC_007954.1 TonB-dependent receptor 2861179 4018902 Sden_2404 Shewanella denitrificans OS217 TonB-dependent receptor YP_563407.1 2858561 D 318161 CDS YP_563408.1 91793757 4018903 2861627..2863159 1 NC_007954.1 hypothetical protein 2863159 4018903 Sden_2405 Shewanella denitrificans OS217 hypothetical protein YP_563408.1 2861627 D 318161 CDS YP_563409.1 91793758 4018904 2863542..2865824 1 NC_007954.1 formate acetyltransferase 2865824 4018904 Sden_2406 Shewanella denitrificans OS217 formate acetyltransferase YP_563409.1 2863542 D 318161 CDS YP_563410.1 91793759 4018905 2865913..2866650 1 NC_007954.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2866650 pflA 4018905 pflA Shewanella denitrificans OS217 pyruvate formate lyase-activating enzyme 1 YP_563410.1 2865913 D 318161 CDS YP_563411.1 91793760 4018906 complement(2866705..2867148) 1 NC_007954.1 hypothetical protein 2867148 4018906 Sden_2408 Shewanella denitrificans OS217 hypothetical protein YP_563411.1 2866705 R 318161 CDS YP_563412.1 91793761 4018907 2867286..2868527 1 NC_007954.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2868527 4018907 Sden_2409 Shewanella denitrificans OS217 acetate kinase YP_563412.1 2867286 D 318161 CDS YP_563413.1 91793762 4018908 2868611..2870791 1 NC_007954.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2870791 4018908 Sden_2410 Shewanella denitrificans OS217 phosphate acetyltransferase YP_563413.1 2868611 D 318161 CDS YP_563414.1 91793763 4018909 2871365..2871790 1 NC_007954.1 hypothetical protein 2871790 4018909 Sden_2411 Shewanella denitrificans OS217 hypothetical protein YP_563414.1 2871365 D 318161 CDS YP_563415.1 91793764 4018910 2872451..2873047 1 NC_007954.1 hypothetical protein 2873047 4018910 Sden_2412 Shewanella denitrificans OS217 hypothetical protein YP_563415.1 2872451 D 318161 CDS YP_563416.1 91793765 4018911 complement(2873143..2874813) 1 NC_007954.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2874813 4018911 Sden_2413 Shewanella denitrificans OS217 glutaminyl-tRNA synthetase YP_563416.1 2873143 R 318161 CDS YP_563417.1 91793766 4018912 complement(2874968..2877286) 1 NC_007954.1 ferrous iron transport protein B 2877286 4018912 Sden_2414 Shewanella denitrificans OS217 ferrous iron transport protein B YP_563417.1 2874968 R 318161 CDS YP_563418.1 91793767 4018913 complement(2877279..2877518) 1 NC_007954.1 hypothetical protein 2877518 4018913 Sden_2415 Shewanella denitrificans OS217 hypothetical protein YP_563418.1 2877279 R 318161 CDS YP_563419.1 91793768 4018914 complement(2877757..2878308) 1 NC_007954.1 GCN5-related N-acetyltransferase 2878308 4018914 Sden_2416 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563419.1 2877757 R 318161 CDS YP_563420.1 91793769 4018915 complement(2878373..2878651) 1 NC_007954.1 PpiC-type peptidyl-prolyl cis-trans isomerase 2878651 4018915 Sden_2417 Shewanella denitrificans OS217 PpiC-type peptidyl-prolyl cis-trans isomerase YP_563420.1 2878373 R 318161 CDS YP_563421.1 91793770 4018916 complement(2878729..2880552) 1 NC_007954.1 hypothetical protein 2880552 4018916 Sden_2418 Shewanella denitrificans OS217 hypothetical protein YP_563421.1 2878729 R 318161 CDS YP_563422.1 91793771 4018917 2880618..2881127 1 NC_007954.1 GGDEF domain-containing protein 2881127 4018917 Sden_2419 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563422.1 2880618 D 318161 CDS YP_563423.1 91793772 4018918 complement(2881243..2882490) 1 NC_007954.1 tetratricopeptide region 2882490 4018918 Sden_2420 Shewanella denitrificans OS217 tetratricopeptide region YP_563423.1 2881243 R 318161 CDS YP_563424.1 91793773 4018919 complement(2882490..2883113) 1 NC_007954.1 TonB-like protein 2883113 4018919 Sden_2421 Shewanella denitrificans OS217 TonB-like protein YP_563424.1 2882490 R 318161 CDS YP_563425.1 91793774 4018920 complement(2883115..2883519) 1 NC_007954.1 biopolymer transport protein ExbD/TolR 2883519 4018920 Sden_2422 Shewanella denitrificans OS217 biopolymer transport protein ExbD/TolR YP_563425.1 2883115 R 318161 CDS YP_563426.1 91793775 4018921 complement(2883533..2884060) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 2884060 4018921 Sden_2423 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_563426.1 2883533 R 318161 CDS YP_563427.1 91793776 4018922 complement(2884060..2885412) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 2885412 4018922 Sden_2424 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_563427.1 2884060 R 318161 CDS YP_563428.1 91793777 4018923 complement(2885412..2886194) 1 NC_007954.1 hypothetical protein 2886194 4018923 Sden_2425 Shewanella denitrificans OS217 hypothetical protein YP_563428.1 2885412 R 318161 CDS YP_563429.1 91793778 4018924 complement(2886851..2886961) 1 NC_007954.1 transposase 2886961 4018924 Sden_2426 Shewanella denitrificans OS217 transposase YP_563429.1 2886851 R 318161 CDS YP_563430.1 91793779 4018925 complement(2887182..2890082) 1 NC_007954.1 TonB-dependent receptor, plug 2890082 4018925 Sden_2427 Shewanella denitrificans OS217 TonB-dependent receptor, plug YP_563430.1 2887182 R 318161 CDS YP_563431.1 91793780 4018926 complement(2890399..2892864) 1 NC_007954.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2892864 4018926 Sden_2428 Shewanella denitrificans OS217 DNA polymerase II YP_563431.1 2890399 R 318161 CDS YP_563432.1 91793781 4018927 2893152..2895227 1 NC_007954.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2895227 dinG 4018927 dinG Shewanella denitrificans OS217 ATP-dependent DNA helicase DinG YP_563432.1 2893152 D 318161 CDS YP_563433.1 91793782 4018928 2895243..2896013 1 NC_007954.1 hypothetical protein 2896013 4018928 Sden_2430 Shewanella denitrificans OS217 hypothetical protein YP_563433.1 2895243 D 318161 CDS YP_563434.1 91793783 4018929 2896010..2896672 1 NC_007954.1 primosomal replication protein N'' 2896672 4018929 Sden_2431 Shewanella denitrificans OS217 primosomal replication protein N'' YP_563434.1 2896010 D 318161 CDS YP_563435.1 91793784 4018930 2896682..2897386 1 NC_007954.1 hypothetical protein 2897386 4018930 Sden_2432 Shewanella denitrificans OS217 hypothetical protein YP_563435.1 2896682 D 318161 CDS YP_563436.1 91793785 4018931 2897679..2898023 1 NC_007954.1 hypothetical protein 2898023 4018931 Sden_2433 Shewanella denitrificans OS217 hypothetical protein YP_563436.1 2897679 D 318161 CDS YP_563437.1 91793786 4018933 2898669..2900333 1 NC_007954.1 pyridoxal-dependent decarboxylase 2900333 4018933 Sden_2434 Shewanella denitrificans OS217 pyridoxal-dependent decarboxylase YP_563437.1 2898669 D 318161 CDS YP_563438.1 91793787 4018934 complement(2900473..2901648) 1 NC_007954.1 chemotaxis sensory transducer 2901648 4018934 Sden_2435 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_563438.1 2900473 R 318161 CDS YP_563439.1 91793788 4018935 complement(2901927..2902799) 1 NC_007954.1 pseudouridine synthase, Rsu 2902799 4018935 Sden_2436 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_563439.1 2901927 R 318161 CDS YP_563440.1 91793789 4018936 complement(2903628..2905700) 1 NC_007954.1 YD repeat-containing protein 2905700 4018936 Sden_2437 Shewanella denitrificans OS217 YD repeat-containing protein YP_563440.1 2903628 R 318161 CDS YP_563441.1 91793790 4018937 complement(2905861..2906349) 1 NC_007954.1 serum amyloid A protein 2906349 4018937 Sden_2438 Shewanella denitrificans OS217 serum amyloid A protein YP_563441.1 2905861 R 318161 CDS YP_563442.1 91793791 4018938 complement(2906349..2907473) 1 NC_007954.1 transposase, IS4 2907473 4018938 Sden_2439 Shewanella denitrificans OS217 transposase, IS4 YP_563442.1 2906349 R 318161 CDS YP_563443.1 91793792 4018939 complement(2907851..2908318) 1 NC_007954.1 hypothetical protein 2908318 4018939 Sden_2440 Shewanella denitrificans OS217 hypothetical protein YP_563443.1 2907851 R 318161 CDS YP_563444.1 91793793 4018940 complement(2908328..2909026) 1 NC_007954.1 hypothetical protein 2909026 4018940 Sden_2441 Shewanella denitrificans OS217 hypothetical protein YP_563444.1 2908328 R 318161 CDS YP_563445.1 91793794 4018941 complement(2909400..2909669) 1 NC_007954.1 hypothetical protein 2909669 4018941 Sden_2442 Shewanella denitrificans OS217 hypothetical protein YP_563445.1 2909400 R 318161 CDS YP_563446.1 91793795 4018942 complement(2909680..2912463) 1 NC_007954.1 YD repeat-containing protein 2912463 4018942 Sden_2443 Shewanella denitrificans OS217 YD repeat-containing protein YP_563446.1 2909680 R 318161 CDS YP_563447.1 91793796 4018943 complement(2912549..2914534) 1 NC_007954.1 Rhs family protein-like protein 2914534 4018943 Sden_2444 Shewanella denitrificans OS217 Rhs family protein-like protein YP_563447.1 2912549 R 318161 CDS YP_563448.1 91793797 4018944 complement(2914576..2916156) 1 NC_007954.1 YD repeat-containing protein 2916156 4018944 Sden_2445 Shewanella denitrificans OS217 YD repeat-containing protein YP_563448.1 2914576 R 318161 CDS YP_563449.1 91793798 4018945 complement(2916618..2917238) 1 NC_007954.1 chromosome segregation and condensation protein ScpB 2917238 4018945 Sden_2446 Shewanella denitrificans OS217 chromosome segregation and condensation protein ScpB YP_563449.1 2916618 R 318161 CDS YP_563450.1 91793799 4018946 complement(2917242..2918030) 1 NC_007954.1 chromosome segregation and condensation protein ScpA 2918030 4018946 Sden_2447 Shewanella denitrificans OS217 chromosome segregation and condensation protein ScpA YP_563450.1 2917242 R 318161 CDS YP_563451.1 91793800 4018947 complement(2918253..2918873) 1 NC_007954.1 Sua5/YciO/YrdC/YwlC 2918873 4018947 Sden_2448 Shewanella denitrificans OS217 Sua5/YciO/YrdC/YwlC YP_563451.1 2918253 R 318161 CDS YP_563452.1 91793801 4018948 complement(2918870..2919730) 1 NC_007954.1 PHP-like protein 2919730 4018948 Sden_2449 Shewanella denitrificans OS217 PHP-like protein YP_563452.1 2918870 R 318161 CDS YP_563453.1 91793802 4018949 2920212..2921852 1 NC_007954.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2921852 4018949 Sden_2450 Shewanella denitrificans OS217 anthranilate synthase component I YP_563453.1 2920212 D 318161 CDS YP_563454.1 91793803 4018950 2921849..2922571 1 NC_007954.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2922571 4018950 Sden_2451 Shewanella denitrificans OS217 anthranilate synthase component II YP_563454.1 2921849 D 318161 CDS YP_563455.1 91793804 4018951 2922565..2923650 1 NC_007954.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2923650 trpD 4018951 trpD Shewanella denitrificans OS217 anthranilate phosphoribosyltransferase YP_563455.1 2922565 D 318161 CDS YP_563456.1 91793805 4018952 2923653..2925188 1 NC_007954.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2925188 4018952 Sden_2453 Shewanella denitrificans OS217 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_563456.1 2923653 D 318161 CDS YP_563457.1 91793806 4018953 2925250..2926455 1 NC_007954.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2926455 4018953 Sden_2454 Shewanella denitrificans OS217 tryptophan synthase subunit beta YP_563457.1 2925250 D 318161 CDS YP_563458.1 91793807 4018954 2926448..2927293 1 NC_007954.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2927293 trpA 4018954 trpA Shewanella denitrificans OS217 tryptophan synthase subunit alpha YP_563458.1 2926448 D 318161 CDS YP_563459.1 91793808 4018955 complement(2927449..2928336) 1 NC_007954.1 transposase, IS4 2928336 4018955 Sden_2456 Shewanella denitrificans OS217 transposase, IS4 YP_563459.1 2927449 R 318161 CDS YP_563460.1 91793809 4018956 complement(2929251..2930297) 1 NC_007954.1 Sel1 2930297 4018956 Sden_2457 Shewanella denitrificans OS217 Sel1 YP_563460.1 2929251 R 318161 CDS YP_563461.1 91793810 4018957 complement(2930376..2930723) 1 NC_007954.1 hypothetical protein 2930723 4018957 Sden_2458 Shewanella denitrificans OS217 hypothetical protein YP_563461.1 2930376 R 318161 CDS YP_563462.1 91793811 4018958 complement(2931040..2932491) 1 NC_007954.1 anion transporter 2932491 4018958 Sden_2459 Shewanella denitrificans OS217 anion transporter YP_563462.1 2931040 R 318161 CDS YP_563463.1 91793812 4018959 complement(2933575..2934243) 1 NC_007954.1 hypothetical protein 2934243 4018959 Sden_2460 Shewanella denitrificans OS217 hypothetical protein YP_563463.1 2933575 R 318161 CDS YP_563464.1 91793813 4018960 complement(2934240..2935028) 1 NC_007954.1 hypothetical protein 2935028 4018960 Sden_2461 Shewanella denitrificans OS217 hypothetical protein YP_563464.1 2934240 R 318161 CDS YP_563465.1 91793814 4018961 2935285..2936199 1 NC_007954.1 peptidase S26A, signal peptidase I 2936199 4018961 Sden_2462 Shewanella denitrificans OS217 peptidase S26A, signal peptidase I YP_563465.1 2935285 D 318161 CDS YP_563466.1 91793815 4018962 2936395..2937645 1 NC_007954.1 hypothetical protein 2937645 4018962 Sden_2463 Shewanella denitrificans OS217 hypothetical protein YP_563466.1 2936395 D 318161 CDS YP_563467.1 91793816 4018964 2938391..2940190 1 NC_007954.1 ATP-dependent protease 2940190 4018964 Sden_2464 Shewanella denitrificans OS217 ATP-dependent protease YP_563467.1 2938391 D 318161 CDS YP_563468.1 91793817 4018965 2940263..2940778 1 NC_007954.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2940778 4018965 Sden_2465 Shewanella denitrificans OS217 3-hydroxydecanoyl-ACP dehydratase YP_563468.1 2940263 D 318161 CDS YP_563469.1 91793818 4018966 complement(2940977..2941153) 1 NC_007954.1 ribosome modulation factor 2941153 4018966 Sden_2466 Shewanella denitrificans OS217 ribosome modulation factor YP_563469.1 2940977 R 318161 CDS YP_563470.1 91793819 4018967 complement(2941336..2943210) 1 NC_007954.1 hypothetical protein 2943210 4018967 Sden_2467 Shewanella denitrificans OS217 hypothetical protein YP_563470.1 2941336 R 318161 CDS YP_563471.1 91793820 4018968 complement(2943237..2945159) 1 NC_007954.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 2945159 4018968 Sden_2468 Shewanella denitrificans OS217 ABC transporter ATPase component YP_563471.1 2943237 R 318161 CDS YP_563472.1 91793821 4018969 complement(2945161..2945397) 1 NC_007954.1 glutaredoxin 2 2945397 4018969 Sden_2469 Shewanella denitrificans OS217 glutaredoxin 2 YP_563472.1 2945161 R 318161 CDS YP_563473.1 91793822 4018970 complement(2945387..2947522) 1 NC_007954.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2947522 rlmL 4018970 rlmL Shewanella denitrificans OS217 23S rRNA m(2)G2445 methyltransferase YP_563473.1 2945387 R 318161 CDS YP_563474.1 91793823 4018971 complement(2947684..2948697) 1 NC_007954.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 2948697 4018971 Sden_2471 Shewanella denitrificans OS217 periplasmic protease YP_563474.1 2947684 R 318161 CDS YP_563475.1 91793824 4018972 complement(2948811..2951330) 1 NC_007954.1 hypothetical protein 2951330 4018972 Sden_2472 Shewanella denitrificans OS217 hypothetical protein YP_563475.1 2948811 R 318161 CDS YP_563476.1 91793825 4018973 2951590..2952327 1 NC_007954.1 short chain dehydrogenase 2952327 4018973 Sden_2473 Shewanella denitrificans OS217 short chain dehydrogenase YP_563476.1 2951590 D 318161 CDS YP_563477.1 91793826 4018974 complement(2952513..2952926) 1 NC_007954.1 competence protein ComEA helix-hairpin-helix region 2952926 4018974 Sden_2474 Shewanella denitrificans OS217 competence protein ComEA helix-hairpin-helix region YP_563477.1 2952513 R 318161 CDS YP_563478.1 91793827 4018975 complement(2953106..2954299) 1 NC_007954.1 hypothetical protein 2954299 4018975 Sden_2475 Shewanella denitrificans OS217 hypothetical protein YP_563478.1 2953106 R 318161 CDS YP_563479.1 91793828 4018976 complement(2954381..2954545) 1 NC_007954.1 hypothetical protein 2954545 4018976 Sden_2476 Shewanella denitrificans OS217 hypothetical protein YP_563479.1 2954381 R 318161 CDS YP_563480.1 91793829 4018977 complement(2954566..2956014) 1 NC_007954.1 hypothetical protein 2956014 4018977 Sden_2477 Shewanella denitrificans OS217 hypothetical protein YP_563480.1 2954566 R 318161 CDS YP_563481.1 91793830 4018978 complement(2956186..2956581) 1 NC_007954.1 hypothetical protein 2956581 4018978 Sden_2478 Shewanella denitrificans OS217 hypothetical protein YP_563481.1 2956186 R 318161 CDS YP_563482.1 91793831 4018979 complement(2956568..2956807) 1 NC_007954.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2956807 pspB 4018979 pspB Shewanella denitrificans OS217 phage shock protein B YP_563482.1 2956568 R 318161 CDS YP_563483.1 91793832 4018980 complement(2956824..2957507) 1 NC_007954.1 PspA/IM30 2957507 4018980 Sden_2480 Shewanella denitrificans OS217 PspA/IM30 YP_563483.1 2956824 R 318161 CDS YP_563484.1 91793833 4018981 2957684..2958790 1 NC_007954.1 sigma-54 factor, interaction region 2958790 4018981 Sden_2481 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563484.1 2957684 D 318161 CDS YP_563485.1 91793834 4018982 2958924..2960672 1 NC_007954.1 extracellular solute-binding protein 2960672 4018982 Sden_2482 Shewanella denitrificans OS217 extracellular solute-binding protein YP_563485.1 2958924 D 318161 CDS YP_563486.1 91793835 4018983 2960672..2961703 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 2961703 4018983 Sden_2483 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_563486.1 2960672 D 318161 CDS YP_563487.1 91793836 4018984 2961690..2962580 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 2962580 4018984 Sden_2484 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_563487.1 2961690 D 318161 CDS YP_563488.1 91793837 4018985 2962584..2963594 1 NC_007954.1 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein 2963594 4018985 Sden_2485 Shewanella denitrificans OS217 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein YP_563488.1 2962584 D 318161 CDS YP_563489.1 91793838 4018986 2963575..2964360 1 NC_007954.1 ABC transporter related 2964360 4018986 Sden_2486 Shewanella denitrificans OS217 ABC transporter related YP_563489.1 2963575 D 318161 CDS YP_563490.1 91793839 4018987 2964466..2965668 1 NC_007954.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2965668 4018987 Sden_2487 Shewanella denitrificans OS217 trans-2-enoyl-CoA reductase YP_563490.1 2964466 D 318161 CDS YP_563491.1 91793840 4018988 complement(2965915..2966337) 1 NC_007954.1 GCN5-related N-acetyltransferase 2966337 4018988 Sden_2488 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563491.1 2965915 R 318161 CDS YP_563492.1 91793841 4018989 complement(2967046..2967939) 1 NC_007954.1 transcription activator, effector binding 2967939 4018989 Sden_2489 Shewanella denitrificans OS217 transcription activator, effector binding YP_563492.1 2967046 R 318161 CDS YP_563493.1 91793842 4018990 complement(2967977..2968567) 1 NC_007954.1 pentapeptide repeat-containing protein 2968567 4018990 Sden_2490 Shewanella denitrificans OS217 pentapeptide repeat-containing protein YP_563493.1 2967977 R 318161 CDS YP_563494.1 91793843 4018991 complement(2968670..2970547) 1 NC_007954.1 PpiC-type peptidyl-prolyl cis-trans isomerase 2970547 4018991 Sden_2491 Shewanella denitrificans OS217 PpiC-type peptidyl-prolyl cis-trans isomerase YP_563494.1 2968670 R 318161 CDS YP_563495.1 91793844 4018992 complement(2970743..2971015) 1 NC_007954.1 histone-like DNA-binding protein 2971015 4018992 Sden_2492 Shewanella denitrificans OS217 histone-like DNA-binding protein YP_563495.1 2970743 R 318161 CDS YP_563496.1 91793845 4018993 complement(2971278..2973629) 1 NC_007954.1 ATP-dependent protease La 2973629 4018993 Sden_2493 Shewanella denitrificans OS217 ATP-dependent protease La YP_563496.1 2971278 R 318161 CDS YP_563497.1 91793846 4018994 complement(2973761..2975041) 1 NC_007954.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2975041 clpX 4018994 clpX Shewanella denitrificans OS217 ATP-dependent protease ATP-binding subunit ClpX YP_563497.1 2973761 R 318161 CDS YP_563498.1 91793847 4018995 complement(2975144..2975755) 1 NC_007954.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2975755 clpP 4018995 clpP Shewanella denitrificans OS217 ATP-dependent Clp protease proteolytic subunit YP_563498.1 2975144 R 318161 CDS YP_563499.1 91793848 4018996 complement(2975847..2977151) 1 NC_007954.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2977151 tig 4018996 tig Shewanella denitrificans OS217 trigger factor YP_563499.1 2975847 R 318161 CDS YP_563500.1 91793849 4019000 2978349..2979209 1 NC_007954.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2979209 4019000 Sden_2497 Shewanella denitrificans OS217 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_563500.1 2978349 D 318161 CDS YP_563501.1 91793850 4019001 complement(2979361..2980740) 1 NC_007954.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2980740 cysS 4019001 cysS Shewanella denitrificans OS217 cysteinyl-tRNA synthetase YP_563501.1 2979361 R 318161 CDS YP_563502.1 91793851 4019002 2980895..2981389 1 NC_007954.1 peptidyl-prolyl cis-trans isomerase, cyclophilin type 2981389 4019002 Sden_2499 Shewanella denitrificans OS217 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_563502.1 2980895 D 318161 CDS YP_563503.1 91793852 4019003 2981409..2982149 1 NC_007954.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2982149 4019003 Sden_2500 Shewanella denitrificans OS217 UDP-2,3-diacylglucosamine hydrolase YP_563503.1 2981409 D 318161 CDS YP_563504.1 91793853 4019004 complement(2982192..2983040) 1 NC_007954.1 dienelactone hydrolase family protein 2983040 4019004 Sden_2501 Shewanella denitrificans OS217 dienelactone hydrolase family protein YP_563504.1 2982192 R 318161 CDS YP_563505.1 91793854 4019005 complement(2983139..2985007) 1 NC_007954.1 hypothetical protein 2985007 4019005 Sden_2502 Shewanella denitrificans OS217 hypothetical protein YP_563505.1 2983139 R 318161 CDS YP_563506.1 91793855 4019006 complement(2985319..2987553) 1 NC_007954.1 TonB-dependent haem/haemoglobin receptor 2987553 4019006 Sden_2503 Shewanella denitrificans OS217 TonB-dependent haem/haemoglobin receptor YP_563506.1 2985319 R 318161 CDS YP_563507.1 91793856 4019007 complement(2987836..2989107) 1 NC_007954.1 peptidase M23B 2989107 4019007 Sden_2504 Shewanella denitrificans OS217 peptidase M23B YP_563507.1 2987836 R 318161 CDS YP_563508.1 91793857 4019008 complement(2989291..2993088) 1 NC_007954.1 SMC protein-like protein 2993088 4019008 Sden_2505 Shewanella denitrificans OS217 SMC protein-like protein YP_563508.1 2989291 R 318161 CDS YP_563509.1 91793858 4019009 complement(2993085..2994356) 1 NC_007954.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 2994356 4019009 Sden_2506 Shewanella denitrificans OS217 exonuclease subunit SbcD YP_563509.1 2993085 R 318161 CDS YP_563510.1 91793859 4019010 complement(2994406..2995167) 1 NC_007954.1 hypothetical protein 2995167 4019010 Sden_2507 Shewanella denitrificans OS217 hypothetical protein YP_563510.1 2994406 R 318161 CDS YP_563511.1 91793860 4019011 complement(2995247..2996206) 1 NC_007954.1 permeases-like protein 2996206 4019011 Sden_2508 Shewanella denitrificans OS217 permeases-like protein YP_563511.1 2995247 R 318161 CDS YP_563512.1 91793861 4019012 complement(2996355..2996741) 1 NC_007954.1 hypothetical protein 2996741 4019012 Sden_2509 Shewanella denitrificans OS217 hypothetical protein YP_563512.1 2996355 R 318161 CDS YP_563513.1 91793862 4019013 complement(2996751..2996981) 1 NC_007954.1 RNA-binding S4 2996981 4019013 Sden_2510 Shewanella denitrificans OS217 RNA-binding S4 YP_563513.1 2996751 R 318161 CDS YP_563514.1 91793863 4019014 complement(2997054..2997911) 1 NC_007954.1 NAD-dependent epimerase/dehydratase 2997911 4019014 Sden_2511 Shewanella denitrificans OS217 NAD-dependent epimerase/dehydratase YP_563514.1 2997054 R 318161 CDS YP_563515.1 91793864 4019015 complement(2998047..2999267) 1 NC_007954.1 hypothetical protein 2999267 4019015 Sden_2512 Shewanella denitrificans OS217 hypothetical protein YP_563515.1 2998047 R 318161 CDS YP_563516.1 91793865 4019016 complement(2999450..3000070) 1 NC_007954.1 hypothetical protein 3000070 4019016 Sden_2513 Shewanella denitrificans OS217 hypothetical protein YP_563516.1 2999450 R 318161 CDS YP_563517.1 91793866 4019017 complement(3000135..3002147) 1 NC_007954.1 DNA ligase, NAD-dependent 3002147 4019017 Sden_2514 Shewanella denitrificans OS217 DNA ligase, NAD-dependent YP_563517.1 3000135 R 318161 CDS YP_563518.1 91793867 4019018 complement(3002206..3003216) 1 NC_007954.1 cell division protein ZipA 3003216 4019018 Sden_2515 Shewanella denitrificans OS217 cell division protein ZipA YP_563518.1 3002206 R 318161 CDS YP_563519.1 91793868 4019019 complement(3003236..3006652) 1 NC_007954.1 chromosome segregation protein SMC 3006652 4019019 Sden_2516 Shewanella denitrificans OS217 chromosome segregation protein SMC YP_563519.1 3003236 R 318161 CDS YP_563520.1 91793869 4019020 3006818..3007591 1 NC_007954.1 role in sulfur assimilation; sulfate transport protein CysZ 3007591 4019020 Sden_2517 Shewanella denitrificans OS217 sulfate transport protein CysZ YP_563520.1 3006818 D 318161 CDS YP_563521.1 91793870 4019021 complement(3007707..3008930) 1 NC_007954.1 GGDEF domain-containing protein 3008930 4019021 Sden_2518 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563521.1 3007707 R 318161 CDS YP_563522.1 91793871 4019022 complement(3008955..3010079) 1 NC_007954.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3010079 4019022 Sden_2519 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_563522.1 3008955 R 318161 CDS YP_563523.1 91793872 4019023 3010475..3011443 1 NC_007954.1 cysteine synthase A 3011443 4019023 Sden_2520 Shewanella denitrificans OS217 cysteine synthase A YP_563523.1 3010475 D 318161 CDS YP_563524.1 91793873 4019024 complement(3011546..3012718) 1 NC_007954.1 methionine gamma-lyase 3012718 4019024 Sden_2521 Shewanella denitrificans OS217 methionine gamma-lyase YP_563524.1 3011546 R 318161 CDS YP_563525.1 91793874 4019025 complement(3012950..3014185) 1 NC_007954.1 AFG1-like ATPase 3014185 4019025 Sden_2522 Shewanella denitrificans OS217 AFG1-like ATPase YP_563525.1 3012950 R 318161 CDS YP_563526.1 91793875 4019026 3014360..3015031 1 NC_007954.1 thioredoxin-like protein 3015031 4019026 Sden_2523 Shewanella denitrificans OS217 thioredoxin-like protein YP_563526.1 3014360 D 318161 CDS YP_563527.1 91793876 4019027 3015228..3015920 1 NC_007954.1 pseudouridylate synthase 3015920 4019027 Sden_2524 Shewanella denitrificans OS217 pseudouridylate synthase YP_563527.1 3015228 D 318161 CDS YP_563528.1 91793877 4019028 complement(3016034..3017257) 1 NC_007954.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3017257 4019028 Sden_2525 Shewanella denitrificans OS217 serine/threonine transporter SstT YP_563528.1 3016034 R 318161 CDS YP_563529.1 91793878 4019029 complement(3017428..3018252) 1 NC_007954.1 hypothetical protein 3018252 4019029 Sden_2526 Shewanella denitrificans OS217 hypothetical protein YP_563529.1 3017428 R 318161 CDS YP_563530.1 91793879 4019030 complement(3018380..3019273) 1 NC_007954.1 CheW-like protein 3019273 4019030 Sden_2527 Shewanella denitrificans OS217 CheW-like protein YP_563530.1 3018380 R 318161 CDS YP_563531.1 91793880 4019031 complement(3019540..3020010) 1 NC_007954.1 Dual specificity protein phosphatase 3020010 4019031 Sden_2528 Shewanella denitrificans OS217 Dual specificity protein phosphatase YP_563531.1 3019540 R 318161 CDS YP_563532.1 91793881 4019032 complement(3020105..3021385) 1 NC_007954.1 DEAD/DEAH box helicase-like protein 3021385 4019032 Sden_2529 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_563532.1 3020105 R 318161 CDS YP_563533.1 91793882 4019033 complement(3021557..3022132) 1 NC_007954.1 methylated-DNA--protein-cysteine methyltransferase 3022132 4019033 Sden_2530 Shewanella denitrificans OS217 methylated-DNA--protein-cysteine methyltransferase YP_563533.1 3021557 R 318161 CDS YP_563534.1 91793883 4019034 complement(3022129..3023766) 1 NC_007954.1 Ada, metal-binding 3023766 4019034 Sden_2531 Shewanella denitrificans OS217 Ada, metal-binding YP_563534.1 3022129 R 318161 CDS YP_563535.1 91793884 4019035 3023968..3025797 1 NC_007954.1 ABC transporter related 3025797 4019035 Sden_2532 Shewanella denitrificans OS217 ABC transporter related YP_563535.1 3023968 D 318161 CDS YP_563536.1 91793885 4019042 3027216..3028637 1 NC_007954.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3028637 gltX 4019042 gltX Shewanella denitrificans OS217 glutamyl-tRNA synthetase YP_563536.1 3027216 D 318161 CDS YP_563537.1 91793886 4019051 3031409..3031771 1 NC_007954.1 hypothetical protein 3031771 4019051 Sden_2534 Shewanella denitrificans OS217 hypothetical protein YP_563537.1 3031409 D 318161 CDS YP_563538.1 91793887 4019053 complement(3033785..3034363) 1 NC_007954.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3034363 4019053 Sden_2536 Shewanella denitrificans OS217 thymidine kinase YP_563538.1 3033785 R 318161 CDS YP_563539.1 91793888 4019054 complement(3034481..3036055) 1 NC_007954.1 Na+/H+ antiporter NhaC 3036055 4019054 Sden_2537 Shewanella denitrificans OS217 Na+/H+ antiporter NhaC YP_563539.1 3034481 R 318161 CDS YP_563540.1 91793889 4019055 complement(3036408..3037331) 1 NC_007954.1 electron transfer flavoprotein, alpha subunit 3037331 4019055 Sden_2538 Shewanella denitrificans OS217 electron transfer flavoprotein, alpha subunit YP_563540.1 3036408 R 318161 CDS YP_563541.1 91793890 4019056 complement(3037333..3038082) 1 NC_007954.1 electron transfer flavoprotein beta-subunit 3038082 4019056 Sden_2539 Shewanella denitrificans OS217 electron transfer flavoprotein beta-subunit YP_563541.1 3037333 R 318161 CDS YP_563542.1 91793891 4019057 3038971..3039378 1 NC_007954.1 histone-like nucleoid-structuring protein H-NS 3039378 4019057 Sden_2540 Shewanella denitrificans OS217 histone-like nucleoid-structuring protein H-NS YP_563542.1 3038971 D 318161 CDS YP_563543.1 91793892 4019058 3039537..3039929 1 NC_007954.1 lipoprotein 3039929 4019058 Sden_2541 Shewanella denitrificans OS217 lipoprotein YP_563543.1 3039537 D 318161 CDS YP_563544.1 91793893 4019059 3039957..3040754 1 NC_007954.1 hypothetical protein 3040754 4019059 Sden_2542 Shewanella denitrificans OS217 hypothetical protein YP_563544.1 3039957 D 318161 CDS YP_563545.1 91793894 4019060 3040741..3041355 1 NC_007954.1 acetyltransferase 3041355 4019060 Sden_2543 Shewanella denitrificans OS217 acetyltransferase YP_563545.1 3040741 D 318161 CDS YP_563546.1 91793895 4019061 3041469..3043184 1 NC_007954.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3043184 4019061 Sden_2544 Shewanella denitrificans OS217 prolyl-tRNA synthetase YP_563546.1 3041469 D 318161 CDS YP_563547.1 91793896 4019062 complement(3043355..3044719) 1 NC_007954.1 ATP-binding region, ATPase-like protein 3044719 4019062 Sden_2545 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_563547.1 3043355 R 318161 CDS YP_563548.1 91793897 4019063 complement(3044726..3046273) 1 NC_007954.1 metal-dependent phosphohydrolase 3046273 4019063 Sden_2546 Shewanella denitrificans OS217 metal-dependent phosphohydrolase YP_563548.1 3044726 R 318161 CDS YP_563549.1 91793898 4019064 3046573..3047700 1 NC_007954.1 patatin 3047700 4019064 Sden_2547 Shewanella denitrificans OS217 patatin YP_563549.1 3046573 D 318161 CDS YP_563550.1 91793899 4019065 3047818..3048393 1 NC_007954.1 dTDP-4-dehydrorhamnose 3,5-epimerase 3048393 4019065 Sden_2548 Shewanella denitrificans OS217 dTDP-4-dehydrorhamnose 3,5-epimerase YP_563550.1 3047818 D 318161 CDS YP_563551.1 91793900 4019066 3048390..3049268 1 NC_007954.1 dTDP-4-dehydrorhamnose reductase 3049268 4019066 Sden_2549 Shewanella denitrificans OS217 dTDP-4-dehydrorhamnose reductase YP_563551.1 3048390 D 318161 CDS YP_563552.1 91793901 4019067 3049489..3049650 1 NC_007954.1 hypothetical protein 3049650 4019067 Sden_2550 Shewanella denitrificans OS217 hypothetical protein YP_563552.1 3049489 D 318161 CDS YP_563553.1 91793902 4019068 complement(3049933..3051309) 1 NC_007954.1 magnesium transporter 3051309 4019068 Sden_2551 Shewanella denitrificans OS217 magnesium transporter YP_563553.1 3049933 R 318161 CDS YP_563554.1 91793903 4019069 3051460..3051945 1 NC_007954.1 glutathione peroxidase 3051945 4019069 Sden_2552 Shewanella denitrificans OS217 glutathione peroxidase YP_563554.1 3051460 D 318161 CDS YP_563555.1 91793904 4019070 complement(3052749..3053720) 1 NC_007954.1 phosphate binding protein 3053720 4019070 Sden_2553 Shewanella denitrificans OS217 phosphate binding protein YP_563555.1 3052749 R 318161 CDS YP_563556.1 91793905 4019071 complement(3053934..3055784) 1 NC_007954.1 peptidase M61 3055784 4019071 Sden_2554 Shewanella denitrificans OS217 peptidase M61 YP_563556.1 3053934 R 318161 CDS YP_563557.1 91793906 4019072 3055878..3058088 1 NC_007954.1 TPR repeat-containing protein 3058088 4019072 Sden_2555 Shewanella denitrificans OS217 TPR repeat-containing protein YP_563557.1 3055878 D 318161 CDS YP_563558.1 91793907 4019073 3058295..3059851 1 NC_007954.1 GGDEF domain-containing protein 3059851 4019073 Sden_2556 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563558.1 3058295 D 318161 CDS YP_563559.1 91793908 4019074 3059911..3061266 1 NC_007954.1 hypothetical protein 3061266 4019074 Sden_2557 Shewanella denitrificans OS217 hypothetical protein YP_563559.1 3059911 D 318161 CDS YP_563560.1 91793909 4019075 3061326..3062084 1 NC_007954.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3062084 xni 4019075 xni Shewanella denitrificans OS217 exonuclease IX YP_563560.1 3061326 D 318161 CDS YP_563561.1 91793910 4019076 3062138..3062566 1 NC_007954.1 hypothetical protein 3062566 4019076 Sden_2559 Shewanella denitrificans OS217 hypothetical protein YP_563561.1 3062138 D 318161 CDS YP_563562.1 91793911 4019077 complement(3062662..3065631) 1 NC_007954.1 peptidase S9, prolyl oligopeptidase active site region 3065631 4019077 Sden_2560 Shewanella denitrificans OS217 peptidase S9, prolyl oligopeptidase active site region YP_563562.1 3062662 R 318161 CDS YP_563563.1 91793912 4019078 3065895..3066905 1 NC_007954.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3066905 4019078 Sden_2561 Shewanella denitrificans OS217 isocitrate dehydrogenase YP_563563.1 3065895 D 318161 CDS YP_563564.1 91793913 4019079 complement(3066986..3068089) 1 NC_007954.1 RNA 2'-O-ribose methyltransferase 3068089 4019079 Sden_2562 Shewanella denitrificans OS217 RNA 2'-O-ribose methyltransferase YP_563564.1 3066986 R 318161 CDS YP_563565.1 91793914 4019080 complement(3068176..3068577) 1 NC_007954.1 hypothetical protein 3068577 4019080 Sden_2563 Shewanella denitrificans OS217 hypothetical protein YP_563565.1 3068176 R 318161 CDS YP_563566.1 91793915 4019081 complement(3068619..3069335) 1 NC_007954.1 hypothetical protein 3069335 4019081 Sden_2564 Shewanella denitrificans OS217 hypothetical protein YP_563566.1 3068619 R 318161 CDS YP_563567.1 91793916 4019082 complement(3069390..3070301) 1 NC_007954.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3070301 4019082 Sden_2565 Shewanella denitrificans OS217 DNA-binding transcriptional activator GcvA YP_563567.1 3069390 R 318161 CDS YP_563568.1 91793917 4019083 complement(3070460..3071920) 1 NC_007954.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3071920 4019083 Sden_2566 Shewanella denitrificans OS217 thiamine biosynthesis protein ThiI YP_563568.1 3070460 R 318161 CDS YP_563569.1 91793918 4019084 complement(3072174..3073130) 1 NC_007954.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3073130 motB 4019084 motB Shewanella denitrificans OS217 flagellar motor protein MotB YP_563569.1 3072174 R 318161 CDS YP_563570.1 91793919 4019085 complement(3073133..3073900) 1 NC_007954.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3073900 4019085 Sden_2568 Shewanella denitrificans OS217 flagellar motor protein PomA YP_563570.1 3073133 R 318161 CDS YP_563571.1 91793920 4019086 3074314..3074550 1 NC_007954.1 exodeoxyribonuclease VII, small subunit 3074550 4019086 Sden_2569 Shewanella denitrificans OS217 exodeoxyribonuclease VII, small subunit YP_563571.1 3074314 D 318161 CDS YP_563572.1 91793921 4019087 3074551..3075432 1 NC_007954.1 polyprenyl synthetase 3075432 4019087 Sden_2570 Shewanella denitrificans OS217 polyprenyl synthetase YP_563572.1 3074551 D 318161 CDS YP_563573.1 91793922 4019088 3075452..3077320 1 NC_007954.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3077320 4019088 Sden_2571 Shewanella denitrificans OS217 1-deoxy-D-xylulose-5-phosphate synthase YP_563573.1 3075452 D 318161 CDS YP_563574.1 91793923 4019089 complement(3077461..3078066) 1 NC_007954.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3078066 4019089 Sden_2572 Shewanella denitrificans OS217 heat shock protein GrpE YP_563574.1 3077461 R 318161 CDS YP_563575.1 91793924 4019090 3078115..3079044 1 NC_007954.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3079044 ppnK 4019090 ppnK Shewanella denitrificans OS217 inorganic polyphosphate/ATP-NAD kinase YP_563575.1 3078115 D 318161 CDS YP_563576.1 91793925 4019091 3079143..3080816 1 NC_007954.1 L-lactate permease 3080816 4019091 Sden_2574 Shewanella denitrificans OS217 L-lactate permease YP_563576.1 3079143 D 318161 CDS YP_563577.1 91793926 4019092 complement(3080822..3081916) 1 NC_007954.1 cobalamin synthesis protein, P47K 3081916 4019092 Sden_2575 Shewanella denitrificans OS217 cobalamin synthesis protein, P47K YP_563577.1 3080822 R 318161 CDS YP_563578.1 91793927 4019093 complement(3081998..3083266) 1 NC_007954.1 DEAD/DEAH box helicase-like protein 3083266 4019093 Sden_2576 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_563578.1 3081998 R 318161 CDS YP_563579.1 91793928 4019094 complement(3083341..3086484) 1 NC_007954.1 GGDEF domain-containing protein 3086484 4019094 Sden_2577 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563579.1 3083341 R 318161 CDS YP_563580.1 91793929 4019095 3086882..3088030 1 NC_007954.1 iron-containing alcohol dehydrogenase 3088030 4019095 Sden_2578 Shewanella denitrificans OS217 iron-containing alcohol dehydrogenase YP_563580.1 3086882 D 318161 CDS YP_563581.1 91793930 4019096 3088270..3088656 1 NC_007954.1 hypothetical protein 3088656 4019096 Sden_2579 Shewanella denitrificans OS217 hypothetical protein YP_563581.1 3088270 D 318161 CDS YP_563582.1 91793931 4019097 complement(3088732..3089343) 1 NC_007954.1 hypothetical protein 3089343 4019097 Sden_2580 Shewanella denitrificans OS217 hypothetical protein YP_563582.1 3088732 R 318161 CDS YP_563583.1 91793932 4019098 complement(3089452..3090162) 1 NC_007954.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3090162 4019098 Sden_2581 Shewanella denitrificans OS217 transcriptional regulator PhoU YP_563583.1 3089452 R 318161 CDS YP_563584.1 91793933 4019099 complement(3090224..3091042) 1 NC_007954.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3091042 4019099 Sden_2582 Shewanella denitrificans OS217 phosphate transporter ATP-binding protein YP_563584.1 3090224 R 318161 CDS YP_563585.1 91793934 4019100 complement(3091073..3092731) 1 NC_007954.1 phosphate ABC transporter permease 3092731 4019100 Sden_2583 Shewanella denitrificans OS217 phosphate ABC transporter permease YP_563585.1 3091073 R 318161 CDS YP_563586.1 91793935 4019101 complement(3092816..3095071) 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 3095071 4019101 Sden_2584 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_563586.1 3092816 R 318161 CDS YP_563587.1 91793936 4019102 3095335..3095841 1 NC_007954.1 amino acid-binding ACT 3095841 4019102 Sden_2585 Shewanella denitrificans OS217 amino acid-binding ACT YP_563587.1 3095335 D 318161 CDS YP_563588.1 91793937 4019103 3095958..3096779 1 NC_007954.1 hypothetical protein 3096779 4019103 Sden_2586 Shewanella denitrificans OS217 hypothetical protein YP_563588.1 3095958 D 318161 CDS YP_563589.1 91793938 4019104 complement(3096817..3098682) 1 NC_007954.1 GGDEF domain-containing protein 3098682 4019104 Sden_2587 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563589.1 3096817 R 318161 CDS YP_563590.1 91793939 4019105 complement(3098775..3099719) 1 NC_007954.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3099719 4019105 Sden_2588 Shewanella denitrificans OS217 homoserine O-succinyltransferase YP_563590.1 3098775 R 318161 CDS YP_563591.1 91793940 4019106 complement(3099952..3100596) 1 NC_007954.1 receptor for colicin S4; outer membrane protein W 3100596 4019106 Sden_2589 Shewanella denitrificans OS217 outer membrane protein W YP_563591.1 3099952 R 318161 CDS YP_563592.1 91793941 4019107 complement(3100828..3101433) 1 NC_007954.1 hypothetical protein 3101433 4019107 Sden_2590 Shewanella denitrificans OS217 hypothetical protein YP_563592.1 3100828 R 318161 CDS YP_563593.1 91793942 4019108 complement(3101492..3102142) 1 NC_007954.1 maleylacetoacetate isomerase 3102142 4019108 Sden_2591 Shewanella denitrificans OS217 maleylacetoacetate isomerase YP_563593.1 3101492 R 318161 CDS YP_563594.1 91793943 4019109 complement(3102250..3103236) 1 NC_007954.1 fumarylacetoacetate (FAA) hydrolase 3103236 4019109 Sden_2592 Shewanella denitrificans OS217 fumarylacetoacetate (FAA) hydrolase YP_563594.1 3102250 R 318161 CDS YP_563595.1 91793944 4019110 complement(3103469..3105007) 1 NC_007954.1 sigma-54 factor, interaction region 3105007 4019110 Sden_2593 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563595.1 3103469 R 318161 CDS YP_563596.1 91793945 4019111 complement(3105235..3105573) 1 NC_007954.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 3105573 phhB 4019111 phhB Shewanella denitrificans OS217 pterin-4-alpha-carbinolamine dehydratase YP_563596.1 3105235 R 318161 CDS YP_563597.1 91793946 4019112 complement(3105635..3106426) 1 NC_007954.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 3106426 phhA 4019112 phhA Shewanella denitrificans OS217 phenylalanine 4-monooxygenase YP_563597.1 3105635 R 318161 CDS YP_563598.1 91793947 4019113 3106737..3107642 1 NC_007954.1 UTP-glucose-1-phosphate uridylyltransferase 3107642 4019113 Sden_2596 Shewanella denitrificans OS217 UTP-glucose-1-phosphate uridylyltransferase YP_563598.1 3106737 D 318161 CDS YP_563599.1 91793948 4019114 3107644..3108660 1 NC_007954.1 UDP-glucose 4-epimerase 3108660 4019114 Sden_2597 Shewanella denitrificans OS217 UDP-glucose 4-epimerase YP_563599.1 3107644 D 318161 CDS YP_563600.1 91793949 4019115 3108712..3109197 1 NC_007954.1 ferredoxin-type protein NapF 3109197 4019115 Sden_2598 Shewanella denitrificans OS217 ferredoxin-type protein NapF YP_563600.1 3108712 D 318161 CDS YP_563601.1 91793950 4019116 complement(3109234..3109893) 1 NC_007954.1 hypothetical protein 3109893 4019116 Sden_2599 Shewanella denitrificans OS217 hypothetical protein YP_563601.1 3109234 R 318161 CDS YP_563602.1 91793951 4019117 complement(3110037..3110831) 1 NC_007954.1 hypothetical protein 3110831 4019117 Sden_2600 Shewanella denitrificans OS217 hypothetical protein YP_563602.1 3110037 R 318161 CDS YP_563603.1 91793952 4019118 3111044..3111571 1 NC_007954.1 hypothetical protein 3111571 4019118 Sden_2601 Shewanella denitrificans OS217 hypothetical protein YP_563603.1 3111044 D 318161 CDS YP_563604.1 91793953 4019119 complement(3111796..3112380) 1 NC_007954.1 hypothetical protein 3112380 4019119 Sden_2602 Shewanella denitrificans OS217 hypothetical protein YP_563604.1 3111796 R 318161 CDS YP_563605.1 91793954 4019120 complement(3113124..3114026) 1 NC_007954.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 3114026 4019120 Sden_2603 Shewanella denitrificans OS217 fructokinase YP_563605.1 3113124 R 318161 CDS YP_563606.1 91793955 4019121 complement(3114385..3116469) 1 NC_007954.1 glycoside hydrolase family protein 3116469 4019121 Sden_2604 Shewanella denitrificans OS217 glycoside hydrolase family protein YP_563606.1 3114385 R 318161 CDS YP_563607.1 91793956 4019122 complement(3116619..3119219) 1 NC_007954.1 Beta-glucosidase 3119219 4019122 Sden_2605 Shewanella denitrificans OS217 Beta-glucosidase YP_563607.1 3116619 R 318161 CDS YP_563608.1 91793957 4019123 complement(3119223..3120530) 1 NC_007954.1 glucose/galactose transporter 3120530 4019123 Sden_2606 Shewanella denitrificans OS217 glucose/galactose transporter YP_563608.1 3119223 R 318161 CDS YP_563609.1 91793958 4019124 3120885..3122216 1 NC_007954.1 Beta-glucosidase 3122216 4019124 Sden_2607 Shewanella denitrificans OS217 Beta-glucosidase YP_563609.1 3120885 D 318161 CDS YP_563610.1 91793959 4019125 3122307..3123635 1 NC_007954.1 sugar (glycoside-Pentoside-hexuronide) transporter 3123635 4019125 Sden_2608 Shewanella denitrificans OS217 sugar (glycoside-Pentoside-hexuronide) transporter YP_563610.1 3122307 D 318161 CDS YP_563611.1 91793960 4019126 3123689..3124717 1 NC_007954.1 periplasmic binding protein/LacI transcriptional regulator 3124717 4019126 Sden_2609 Shewanella denitrificans OS217 periplasmic binding protein/LacI transcriptional regulator YP_563611.1 3123689 D 318161 CDS YP_563612.1 91793961 4019127 3125198..3128170 1 NC_007954.1 TonB-dependent receptor 3128170 4019127 Sden_2610 Shewanella denitrificans OS217 TonB-dependent receptor YP_563612.1 3125198 D 318161 CDS YP_563613.1 91793962 4019128 complement(3128310..3129125) 1 NC_007954.1 3'(2'),5'-bisphosphate nucleotidase 3129125 4019128 Sden_2611 Shewanella denitrificans OS217 3'(2'),5'-bisphosphate nucleotidase YP_563613.1 3128310 R 318161 CDS YP_563614.1 91793963 4019129 3129514..3130092 1 NC_007954.1 pesticin domain-containing protein 3130092 4019129 Sden_2612 Shewanella denitrificans OS217 pesticin domain-containing protein YP_563614.1 3129514 D 318161 CDS YP_563615.1 91793964 4019130 complement(3130240..3130773) 1 NC_007954.1 hypothetical protein 3130773 4019130 Sden_2613 Shewanella denitrificans OS217 hypothetical protein YP_563615.1 3130240 R 318161 CDS YP_563616.1 91793965 4019131 complement(3130836..3132785) 1 NC_007954.1 potassium efflux system protein 3132785 4019131 Sden_2614 Shewanella denitrificans OS217 potassium efflux system protein YP_563616.1 3130836 R 318161 CDS YP_563617.1 91793966 4019132 3133033..3133917 1 NC_007954.1 GGDEF domain-containing protein 3133917 4019132 Sden_2615 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563617.1 3133033 D 318161 CDS YP_563618.1 91793967 4019133 3134500..3135600 1 NC_007954.1 peptidyl-Lys metalloendopeptidase 3135600 4019133 Sden_2616 Shewanella denitrificans OS217 peptidyl-Lys metalloendopeptidase YP_563618.1 3134500 D 318161 CDS YP_563619.1 91793968 4019134 3135757..3136269 1 NC_007954.1 hypothetical protein 3136269 4019134 Sden_2617 Shewanella denitrificans OS217 hypothetical protein YP_563619.1 3135757 D 318161 CDS YP_563620.1 91793969 4019135 complement(3136432..3136848) 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 3136848 4019135 Sden_2618 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_563620.1 3136432 R 318161 CDS YP_563621.1 91793970 4019136 complement(3137002..3137517) 1 NC_007954.1 GCN5-related N-acetyltransferase 3137517 4019136 Sden_2619 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563621.1 3137002 R 318161 CDS YP_563622.1 91793971 4019137 complement(3137665..3138006) 1 NC_007954.1 hypothetical protein 3138006 4019137 Sden_2620 Shewanella denitrificans OS217 hypothetical protein YP_563622.1 3137665 R 318161 CDS YP_563623.1 91793972 4019138 complement(3138185..3138583) 1 NC_007954.1 hypothetical protein 3138583 4019138 Sden_2621 Shewanella denitrificans OS217 hypothetical protein YP_563623.1 3138185 R 318161 CDS YP_563624.1 91793973 4019139 3138975..3140273 1 NC_007954.1 peptidase M23B 3140273 4019139 Sden_2622 Shewanella denitrificans OS217 peptidase M23B YP_563624.1 3138975 D 318161 CDS YP_563625.1 91793974 4019140 complement(3140435..3140962) 1 NC_007954.1 GCN5-related N-acetyltransferase 3140962 4019140 Sden_2623 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563625.1 3140435 R 318161 CDS YP_563626.1 91793975 4019141 complement(3141319..3141762) 1 NC_007954.1 hypothetical protein 3141762 4019141 Sden_2624 Shewanella denitrificans OS217 hypothetical protein YP_563626.1 3141319 R 318161 CDS YP_563627.1 91793976 4019142 complement(3142421..3143557) 1 NC_007954.1 4'-phosphopantetheinyl transferase 3143557 4019142 Sden_2625 Shewanella denitrificans OS217 4'-phosphopantetheinyl transferase YP_563627.1 3142421 R 318161 CDS YP_563628.1 91793977 4019143 3143850..3144860 1 NC_007954.1 transcriptional regulator 3144860 4019143 Sden_2626 Shewanella denitrificans OS217 transcriptional regulator YP_563628.1 3143850 D 318161 CDS YP_563629.1 91793978 4019144 3144841..3152835 1 NC_007954.1 beta-ketoacyl synthase 3152835 4019144 Sden_2627 Shewanella denitrificans OS217 beta-ketoacyl synthase YP_563629.1 3144841 D 318161 CDS YP_563630.1 91793979 4019145 3152832..3155057 1 NC_007954.1 omega-3 polyunsaturated fatty acid synthase PfaB 3155057 4019145 Sden_2628 Shewanella denitrificans OS217 omega-3 polyunsaturated fatty acid synthase PfaB YP_563630.1 3152832 D 318161 CDS YP_563631.1 91793980 4019146 3155054..3160993 1 NC_007954.1 3-hydroxyacyl-ACP dehydratase 3160993 4019146 Sden_2629 Shewanella denitrificans OS217 3-hydroxyacyl-ACP dehydratase YP_563631.1 3155054 D 318161 CDS YP_563632.1 91793981 4019147 3161018..3162646 1 NC_007954.1 hypothetical protein 3162646 4019147 Sden_2630 Shewanella denitrificans OS217 hypothetical protein YP_563632.1 3161018 D 318161 CDS YP_563633.1 91793982 4019148 3162720..3162977 1 NC_007954.1 hypothetical protein 3162977 4019148 Sden_2631 Shewanella denitrificans OS217 hypothetical protein YP_563633.1 3162720 D 318161 CDS YP_563634.1 91793983 4019149 complement(3163213..3163503) 1 NC_007954.1 hypothetical protein 3163503 4019149 Sden_2632 Shewanella denitrificans OS217 hypothetical protein YP_563634.1 3163213 R 318161 CDS YP_563635.1 91793984 4019150 3163667..3163930 1 NC_007954.1 hypothetical protein 3163930 4019150 Sden_2633 Shewanella denitrificans OS217 hypothetical protein YP_563635.1 3163667 D 318161 CDS YP_563636.1 91793985 4019151 3163943..3164656 1 NC_007954.1 sigma-70, region 4 type 2 3164656 4019151 Sden_2634 Shewanella denitrificans OS217 sigma-70, region 4 type 2 YP_563636.1 3163943 D 318161 CDS YP_563637.1 91793986 4019152 3164713..3164967 1 NC_007954.1 hypothetical protein 3164967 4019152 Sden_2635 Shewanella denitrificans OS217 hypothetical protein YP_563637.1 3164713 D 318161 CDS YP_563638.1 91793987 4019153 3165324..3166064 1 NC_007954.1 hypothetical protein 3166064 4019153 Sden_2636 Shewanella denitrificans OS217 hypothetical protein YP_563638.1 3165324 D 318161 CDS YP_563639.1 91793988 4019154 complement(3166047..3166718) 1 NC_007954.1 fumarylacetoacetate (FAA) hydrolase 3166718 4019154 Sden_2637 Shewanella denitrificans OS217 fumarylacetoacetate (FAA) hydrolase YP_563639.1 3166047 R 318161 CDS YP_563640.1 91793989 4019155 3166995..3169022 1 NC_007954.1 chemotaxis sensory transducer 3169022 4019155 Sden_2638 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_563640.1 3166995 D 318161 CDS YP_563641.1 91793990 4019156 complement(3169164..3170174) 1 NC_007954.1 succinylglutamate desuccinylase/aspartoacylase 3170174 4019156 Sden_2639 Shewanella denitrificans OS217 succinylglutamate desuccinylase/aspartoacylase YP_563641.1 3169164 R 318161 CDS YP_563642.1 91793991 4019157 complement(3170174..3171079) 1 NC_007954.1 S6 modification enzyme RimK 3171079 4019157 Sden_2640 Shewanella denitrificans OS217 S6 modification enzyme RimK YP_563642.1 3170174 R 318161 CDS YP_563643.1 91793992 4019158 complement(3171081..3171512) 1 NC_007954.1 hypothetical protein 3171512 4019158 Sden_2641 Shewanella denitrificans OS217 hypothetical protein YP_563643.1 3171081 R 318161 CDS YP_563644.1 91793993 4019159 3172025..3172711 1 NC_007954.1 hypothetical protein 3172711 4019159 Sden_2642 Shewanella denitrificans OS217 hypothetical protein YP_563644.1 3172025 D 318161 CDS YP_563645.1 91793994 4019160 3172971..3174365 1 NC_007954.1 Fmu (Sun) 3174365 4019160 Sden_2643 Shewanella denitrificans OS217 Fmu (Sun) YP_563645.1 3172971 D 318161 CDS YP_563646.1 91793995 4019161 complement(3174525..3175535) 1 NC_007954.1 UDP-glucose 4-epimerase 3175535 4019161 Sden_2644 Shewanella denitrificans OS217 UDP-glucose 4-epimerase YP_563646.1 3174525 R 318161 CDS YP_563647.1 91793996 4019162 complement(3175532..3177481) 1 NC_007954.1 polysaccharide biosynthesis protein CapD 3177481 4019162 Sden_2645 Shewanella denitrificans OS217 polysaccharide biosynthesis protein CapD YP_563647.1 3175532 R 318161 CDS YP_563648.1 91793997 4019163 complement(3177641..3178819) 1 NC_007954.1 DegT/DnrJ/EryC1/StrS aminotransferase 3178819 4019163 Sden_2646 Shewanella denitrificans OS217 DegT/DnrJ/EryC1/StrS aminotransferase YP_563648.1 3177641 R 318161 CDS YP_563649.1 91793998 4019164 complement(3178865..3179506) 1 NC_007954.1 acetyltransferase 3179506 4019164 Sden_2647 Shewanella denitrificans OS217 acetyltransferase YP_563649.1 3178865 R 318161 CDS YP_563650.1 91793999 4019165 complement(3179496..3180098) 1 NC_007954.1 UDP-phosphate galactosephosphotransferase 3180098 4019165 Sden_2648 Shewanella denitrificans OS217 UDP-phosphate galactosephosphotransferase YP_563650.1 3179496 R 318161 CDS YP_563651.1 91794000 4019166 complement(3180091..3181236) 1 NC_007954.1 glycosyl transferase, group 1 3181236 4019166 Sden_2649 Shewanella denitrificans OS217 glycosyl transferase, group 1 YP_563651.1 3180091 R 318161 CDS YP_563652.1 91794001 4019167 complement(3181366..3182439) 1 NC_007954.1 glycosyl transferase, group 1 3182439 4019167 Sden_2650 Shewanella denitrificans OS217 glycosyl transferase, group 1 YP_563652.1 3181366 R 318161 CDS YP_563653.1 91794002 4019168 complement(3182468..3183742) 1 NC_007954.1 hypothetical protein 3183742 4019168 Sden_2651 Shewanella denitrificans OS217 hypothetical protein YP_563653.1 3182468 R 318161 CDS YP_563654.1 91794003 4019169 complement(3183745..3184617) 1 NC_007954.1 glycosyl transferase family protein 3184617 4019169 Sden_2652 Shewanella denitrificans OS217 glycosyl transferase family protein YP_563654.1 3183745 R 318161 CDS YP_563655.1 91794004 4019170 complement(3184640..3185869) 1 NC_007954.1 hypothetical protein 3185869 4019170 Sden_2653 Shewanella denitrificans OS217 hypothetical protein YP_563655.1 3184640 R 318161 CDS YP_563656.1 91794005 4019171 complement(3185907..3187040) 1 NC_007954.1 DegT/DnrJ/EryC1/StrS aminotransferase 3187040 4019171 Sden_2654 Shewanella denitrificans OS217 DegT/DnrJ/EryC1/StrS aminotransferase YP_563656.1 3185907 R 318161 CDS YP_563657.1 91794006 4019172 complement(3187044..3187472) 1 NC_007954.1 hypothetical protein 3187472 4019172 Sden_2655 Shewanella denitrificans OS217 hypothetical protein YP_563657.1 3187044 R 318161 CDS YP_563658.1 91794007 4019173 complement(3187472..3188572) 1 NC_007954.1 NAD-dependent epimerase/dehydratase 3188572 4019173 Sden_2656 Shewanella denitrificans OS217 NAD-dependent epimerase/dehydratase YP_563658.1 3187472 R 318161 CDS YP_563659.1 91794008 4019174 complement(3188577..3189347) 1 NC_007954.1 nucleotidyl transferase 3189347 4019174 Sden_2657 Shewanella denitrificans OS217 nucleotidyl transferase YP_563659.1 3188577 R 318161 CDS YP_563660.1 91794009 4019175 complement(3189382..3190485) 1 NC_007954.1 DegT/DnrJ/EryC1/StrS aminotransferase 3190485 4019175 Sden_2658 Shewanella denitrificans OS217 DegT/DnrJ/EryC1/StrS aminotransferase YP_563660.1 3189382 R 318161 CDS YP_563661.1 91794010 4019176 complement(3190485..3191399) 1 NC_007954.1 WxcM-like protein 3191399 4019176 Sden_2659 Shewanella denitrificans OS217 WxcM-like protein YP_563661.1 3190485 R 318161 CDS YP_563662.1 91794011 4019177 complement(3191413..3191952) 1 NC_007954.1 dTDP-4-dehydrorhamnose 3,5-epimerase 3191952 4019177 Sden_2660 Shewanella denitrificans OS217 dTDP-4-dehydrorhamnose 3,5-epimerase YP_563662.1 3191413 R 318161 CDS YP_563663.1 91794012 4019178 complement(3191953..3192828) 1 NC_007954.1 dTDP-4-dehydrorhamnose reductase 3192828 4019178 Sden_2661 Shewanella denitrificans OS217 dTDP-4-dehydrorhamnose reductase YP_563663.1 3191953 R 318161 CDS YP_563664.1 91794013 4019179 complement(3192830..3193699) 1 NC_007954.1 glucose-1-phosphate thymidylyltransferase 3193699 4019179 Sden_2662 Shewanella denitrificans OS217 glucose-1-phosphate thymidylyltransferase YP_563664.1 3192830 R 318161 CDS YP_563665.1 91794014 4019180 complement(3193784..3194872) 1 NC_007954.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase 3194872 4019180 Sden_2663 Shewanella denitrificans OS217 dTDP-glucose 4,6 dehydratase YP_563665.1 3193784 R 318161 CDS YP_563666.1 91794015 4019181 complement(3194869..3196326) 1 NC_007954.1 hypothetical protein 3196326 4019181 Sden_2664 Shewanella denitrificans OS217 hypothetical protein YP_563666.1 3194869 R 318161 CDS YP_563667.1 91794016 4019182 complement(3196336..3197382) 1 NC_007954.1 hypothetical protein 3197382 4019182 Sden_2665 Shewanella denitrificans OS217 hypothetical protein YP_563667.1 3196336 R 318161 CDS YP_563668.1 91794017 4019183 complement(3197407..3198129) 1 NC_007954.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 3198129 4019183 Sden_2666 Shewanella denitrificans OS217 3-deoxy-manno-octulosonate cytidylyltransferase YP_563668.1 3197407 R 318161 CDS YP_563669.1 91794018 4019184 complement(3198139..3198810) 1 NC_007954.1 haloacid dehalogenase-like hydrolase 3198810 4019184 Sden_2667 Shewanella denitrificans OS217 haloacid dehalogenase-like hydrolase YP_563669.1 3198139 R 318161 CDS YP_563670.1 91794019 4019185 complement(3198794..3200413) 1 NC_007954.1 pyruvate carboxyltransferase 3200413 4019185 Sden_2668 Shewanella denitrificans OS217 pyruvate carboxyltransferase YP_563670.1 3198794 R 318161 CDS YP_563671.1 91794020 4019186 complement(3200713..3201687) 1 NC_007954.1 lipopolysaccharide biosynthesis 3201687 4019186 Sden_2669 Shewanella denitrificans OS217 lipopolysaccharide biosynthesis YP_563671.1 3200713 R 318161 CDS YP_563672.1 91794021 4019187 complement(3201788..3202183) 1 NC_007954.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 3202183 4019187 Sden_2670 Shewanella denitrificans OS217 hypothetical protein YP_563672.1 3201788 R 318161 CDS YP_563673.1 91794022 4019188 complement(3202272..3205031) 1 NC_007954.1 polysaccharide export protein 3205031 4019188 Sden_2671 Shewanella denitrificans OS217 polysaccharide export protein YP_563673.1 3202272 R 318161 CDS YP_563674.1 91794023 4019189 complement(3205850..3206350) 1 NC_007954.1 transcriptional activator RfaH 3206350 4019189 Sden_2672 Shewanella denitrificans OS217 transcriptional activator RfaH YP_563674.1 3205850 R 318161 CDS YP_563675.1 91794024 4019190 complement(3206624..3207049) 1 NC_007954.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3207049 4019190 Sden_2673 Shewanella denitrificans OS217 Holliday junction resolvase-like protein YP_563675.1 3206624 R 318161 CDS YP_563676.1 91794025 4019191 complement(3207207..3207761) 1 NC_007954.1 hypothetical protein 3207761 4019191 Sden_2674 Shewanella denitrificans OS217 hypothetical protein YP_563676.1 3207207 R 318161 CDS YP_563677.1 91794026 4019192 complement(3207786..3208151) 1 NC_007954.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 3208151 4019192 Sden_2675 Shewanella denitrificans OS217 translation initiation factor Sui1 YP_563677.1 3207786 R 318161 CDS YP_563678.1 91794027 4019193 3208452..3209009 1 NC_007954.1 hypothetical protein 3209009 4019193 Sden_2676 Shewanella denitrificans OS217 hypothetical protein YP_563678.1 3208452 D 318161 CDS YP_563679.1 91794028 4019194 complement(3209041..3209556) 1 NC_007954.1 GCN5-related N-acetyltransferase 3209556 4019194 Sden_2677 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563679.1 3209041 R 318161 CDS YP_563680.1 91794029 4019195 complement(3209556..3210572) 1 NC_007954.1 ferrochelatase 3210572 4019195 Sden_2678 Shewanella denitrificans OS217 ferrochelatase YP_563680.1 3209556 R 318161 CDS YP_563681.1 91794030 4019196 complement(3210682..3211260) 1 NC_007954.1 glutathione peroxidase 3211260 4019196 Sden_2679 Shewanella denitrificans OS217 glutathione peroxidase YP_563681.1 3210682 R 318161 CDS YP_563682.1 91794031 4019197 complement(3211623..3212735) 1 NC_007954.1 twitching motility protein 3212735 4019197 Sden_2680 Shewanella denitrificans OS217 twitching motility protein YP_563682.1 3211623 R 318161 CDS YP_563683.1 91794032 4019198 complement(3212747..3213796) 1 NC_007954.1 twitching motility protein 3213796 4019198 Sden_2681 Shewanella denitrificans OS217 twitching motility protein YP_563683.1 3212747 R 318161 CDS YP_563684.1 91794033 4019199 3213819..3214526 1 NC_007954.1 hypothetical protein 3214526 4019199 Sden_2682 Shewanella denitrificans OS217 hypothetical protein YP_563684.1 3213819 D 318161 CDS YP_563685.1 91794034 4019200 3214654..3215472 1 NC_007954.1 pyrroline-5-carboxylate reductase 3215472 4019200 Sden_2683 Shewanella denitrificans OS217 pyrroline-5-carboxylate reductase YP_563685.1 3214654 D 318161 CDS YP_563686.1 91794035 4019201 3215647..3216201 1 NC_007954.1 protein of unknown function YGGT 3216201 4019201 Sden_2684 Shewanella denitrificans OS217 protein of unknown function YGGT YP_563686.1 3215647 D 318161 CDS YP_563687.1 91794036 4019202 3216376..3216825 1 NC_007954.1 hypothetical protein 3216825 4019202 Sden_2685 Shewanella denitrificans OS217 hypothetical protein YP_563687.1 3216376 D 318161 CDS YP_563688.1 91794037 4019203 3217005..3217607 1 NC_007954.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3217607 4019203 Sden_2686 Shewanella denitrificans OS217 deoxyribonucleotide triphosphate pyrophosphatase YP_563688.1 3217005 D 318161 CDS YP_563689.1 91794038 4019204 3217617..3218819 1 NC_007954.1 oxygen-independent coproporphyrinogen III oxidase 3218819 4019204 Sden_2687 Shewanella denitrificans OS217 oxygen-independent coproporphyrinogen III oxidase YP_563689.1 3217617 D 318161 CDS YP_563690.1 91794039 4019205 complement(3218887..3220185) 1 NC_007954.1 ATP-binding region, ATPase-like protein 3220185 4019205 Sden_2688 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_563690.1 3218887 R 318161 CDS YP_563691.1 91794040 4019206 complement(3220311..3221000) 1 NC_007954.1 phosphate regulon transcriptional regulatory protein phoB 3221000 4019206 Sden_2689 Shewanella denitrificans OS217 phosphate regulon transcriptional regulatory protein phoB YP_563691.1 3220311 R 318161 CDS YP_563692.1 91794041 4019207 complement(3221187..3222140) 1 NC_007954.1 porin 3222140 4019207 Sden_2690 Shewanella denitrificans OS217 porin YP_563692.1 3221187 R 318161 CDS YP_563693.1 91794042 4019208 3222511..3223422 1 NC_007954.1 Required for efficient pilin antigenic variation; recombination associated protein 3223422 rdgC 4019208 rdgC Shewanella denitrificans OS217 recombination associated protein YP_563693.1 3222511 D 318161 CDS YP_563694.1 91794043 4019209 3223712..3225586 1 NC_007954.1 hypothetical protein 3225586 4019209 Sden_2692 Shewanella denitrificans OS217 hypothetical protein YP_563694.1 3223712 D 318161 CDS YP_563695.1 91794044 4019210 complement(3226177..3227118) 1 NC_007954.1 LysR, substrate-binding 3227118 4019210 Sden_2693 Shewanella denitrificans OS217 LysR, substrate-binding YP_563695.1 3226177 R 318161 CDS YP_563696.1 91794045 4019211 complement(3227526..3228350) 1 NC_007954.1 hypothetical protein 3228350 4019211 Sden_2694 Shewanella denitrificans OS217 hypothetical protein YP_563696.1 3227526 R 318161 CDS YP_563697.1 91794046 4019212 complement(3228686..3229600) 1 NC_007954.1 catalyzes the formation of glutamate from glutamine; glutaminase 3229600 4019212 Sden_2695 Shewanella denitrificans OS217 glutaminase YP_563697.1 3228686 R 318161 CDS YP_563698.1 91794047 4019213 complement(3229609..3229935) 1 NC_007954.1 hypothetical protein 3229935 4019213 Sden_2696 Shewanella denitrificans OS217 hypothetical protein YP_563698.1 3229609 R 318161 CDS YP_563699.1 91794048 4019214 complement(3229989..3230705) 1 NC_007954.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3230705 trmB 4019214 trmB Shewanella denitrificans OS217 tRNA (guanine-N(7)-)-methyltransferase YP_563699.1 3229989 R 318161 CDS YP_563700.1 91794049 4019215 3230888..3231961 1 NC_007954.1 A/G-specific adenine glycosylase 3231961 4019215 Sden_2698 Shewanella denitrificans OS217 A/G-specific adenine glycosylase YP_563700.1 3230888 D 318161 CDS YP_563701.1 91794050 4019216 3231993..3232268 1 NC_007954.1 hypothetical protein 3232268 4019216 Sden_2699 Shewanella denitrificans OS217 hypothetical protein YP_563701.1 3231993 D 318161 CDS YP_563702.1 91794051 4019219 3232815..3233702 1 NC_007954.1 transposase, IS4 3233702 4019219 Sden_2700 Shewanella denitrificans OS217 transposase, IS4 YP_563702.1 3232815 D 318161 CDS YP_563703.1 91794052 4019220 complement(3233836..3234546) 1 NC_007954.1 SapC 3234546 4019220 Sden_2701 Shewanella denitrificans OS217 SapC YP_563703.1 3233836 R 318161 CDS YP_563704.1 91794053 4019221 complement(3234877..3236178) 1 NC_007954.1 glucose/galactose transporter 3236178 4019221 Sden_2702 Shewanella denitrificans OS217 glucose/galactose transporter YP_563704.1 3234877 R 318161 CDS YP_563705.1 91794054 4019222 complement(3236413..3237615) 1 NC_007954.1 hypothetical protein 3237615 4019222 Sden_2703 Shewanella denitrificans OS217 hypothetical protein YP_563705.1 3236413 R 318161 CDS YP_563706.1 91794055 4019223 complement(3237645..3238808) 1 NC_007954.1 N-acetylglucosamine-6-phosphate deacetylase 3238808 4019223 Sden_2704 Shewanella denitrificans OS217 N-acetylglucosamine-6-phosphate deacetylase YP_563706.1 3237645 R 318161 CDS YP_563707.1 91794056 4019224 complement(3238848..3239849) 1 NC_007954.1 glutamine-fructose-6-phosphate transaminase (isomerizing) 3239849 4019224 Sden_2705 Shewanella denitrificans OS217 glutamine-fructose-6-phosphate transaminase (isomerizing) YP_563707.1 3238848 R 318161 CDS YP_563708.1 91794057 4019225 complement(3239914..3240813) 1 NC_007954.1 ATPase, BadF/BadG/BcrA/BcrD type 3240813 4019225 Sden_2706 Shewanella denitrificans OS217 ATPase, BadF/BadG/BcrA/BcrD type YP_563708.1 3239914 R 318161 CDS YP_563709.1 91794058 4019226 complement(3241941..3243488) 1 NC_007954.1 tryptophan halogenase 3243488 4019226 Sden_2707 Shewanella denitrificans OS217 tryptophan halogenase YP_563709.1 3241941 R 318161 CDS YP_563710.1 91794059 4019227 complement(3243546..3246194) 1 NC_007954.1 TonB-dependent receptor 3246194 4019227 Sden_2708 Shewanella denitrificans OS217 TonB-dependent receptor YP_563710.1 3243546 R 318161 CDS YP_563711.1 91794060 4019228 3246554..3247597 1 NC_007954.1 periplasmic binding protein/LacI transcriptional regulator 3247597 4019228 Sden_2709 Shewanella denitrificans OS217 periplasmic binding protein/LacI transcriptional regulator YP_563711.1 3246554 D 318161 CDS YP_563712.1 91794061 4019229 complement(3247613..3248899) 1 NC_007954.1 NADH dehydrogenase 3248899 4019229 Sden_2710 Shewanella denitrificans OS217 NADH dehydrogenase YP_563712.1 3247613 R 318161 CDS YP_563713.1 91794062 4019230 complement(3248973..3249311) 1 NC_007954.1 nitrogen regulatory protein P-II 3249311 4019230 Sden_2711 Shewanella denitrificans OS217 nitrogen regulatory protein P-II YP_563713.1 3248973 R 318161 CDS YP_563714.1 91794063 4019231 3249558..3250070 1 NC_007954.1 type IV pilus biogenesis protein 3250070 4019231 Sden_2712 Shewanella denitrificans OS217 type IV pilus biogenesis protein YP_563714.1 3249558 D 318161 CDS YP_563715.1 91794064 4019232 3250200..3250718 1 NC_007954.1 type IV pilus biogenesis protein 3250718 4019232 Sden_2713 Shewanella denitrificans OS217 type IV pilus biogenesis protein YP_563715.1 3250200 D 318161 CDS YP_563716.1 91794065 4019233 complement(3250842..3251132) 1 NC_007954.1 hypothetical protein 3251132 4019233 Sden_2714 Shewanella denitrificans OS217 hypothetical protein YP_563716.1 3250842 R 318161 CDS YP_563717.1 91794066 4019234 complement(3251132..3251521) 1 NC_007954.1 methylation 3251521 4019234 Sden_2715 Shewanella denitrificans OS217 methylation YP_563717.1 3251132 R 318161 CDS YP_563718.1 91794067 4019235 complement(3251526..3255098) 1 NC_007954.1 type IV pilin biogenesis protein 3255098 4019235 Sden_2716 Shewanella denitrificans OS217 type IV pilin biogenesis protein YP_563718.1 3251526 R 318161 CDS YP_563719.1 91794068 4019236 complement(3255108..3255536) 1 NC_007954.1 type IV pilus assembly protein PilX 3255536 4019236 Sden_2717 Shewanella denitrificans OS217 type IV pilus assembly protein PilX YP_563719.1 3255108 R 318161 CDS YP_563720.1 91794069 4019237 complement(3255599..3256570) 1 NC_007954.1 type IV pilus assembly protein PilW 3256570 4019237 Sden_2718 Shewanella denitrificans OS217 type IV pilus assembly protein PilW YP_563720.1 3255599 R 318161 CDS YP_563721.1 91794070 4019238 complement(3256571..3257125) 1 NC_007954.1 methylation 3257125 4019238 Sden_2719 Shewanella denitrificans OS217 methylation YP_563721.1 3256571 R 318161 CDS YP_563722.1 91794071 4019239 complement(3257662..3258621) 1 NC_007954.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3258621 ispH 4019239 ispH Shewanella denitrificans OS217 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_563722.1 3257662 R 318161 CDS YP_563723.1 91794072 4019240 complement(3258626..3259051) 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 3259051 4019240 Sden_2721 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_563723.1 3258626 R 318161 CDS YP_563724.1 91794073 4019241 complement(3259202..3259750) 1 NC_007954.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3259750 lspA 4019241 lspA Shewanella denitrificans OS217 lipoprotein signal peptidase YP_563724.1 3259202 R 318161 CDS YP_563725.1 91794074 4019242 complement(3259737..3262568) 1 NC_007954.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 3262568 ileS 4019242 ileS Shewanella denitrificans OS217 isoleucyl-tRNA synthetase YP_563725.1 3259737 R 318161 CDS YP_563726.1 91794075 4019243 complement(3262592..3263527) 1 NC_007954.1 riboflavin biosynthesis protein RibF 3263527 4019243 Sden_2724 Shewanella denitrificans OS217 riboflavin biosynthesis protein RibF YP_563726.1 3262592 R 318161 CDS YP_563727.1 91794076 4019244 complement(3263601..3265160) 1 NC_007954.1 integral membrane protein MviN 3265160 4019244 Sden_2725 Shewanella denitrificans OS217 integral membrane protein MviN YP_563727.1 3263601 R 318161 CDS YP_563728.1 91794077 4019245 3265422..3265688 1 NC_007954.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3265688 rpsT 4019245 rpsT Shewanella denitrificans OS217 30S ribosomal protein S20 YP_563728.1 3265422 D 318161 CDS YP_563729.1 91794078 4019246 complement(3265845..3266141) 1 NC_007954.1 regulatory protein, ArsR 3266141 4019246 Sden_2727 Shewanella denitrificans OS217 regulatory protein, ArsR YP_563729.1 3265845 R 318161 CDS YP_563730.1 91794079 4019247 3266288..3267733 1 NC_007954.1 peptidase M28 3267733 4019247 Sden_2728 Shewanella denitrificans OS217 peptidase M28 YP_563730.1 3266288 D 318161 CDS YP_563731.1 91794080 4019248 complement(3267849..3268625) 1 NC_007954.1 hypothetical protein 3268625 4019248 Sden_2729 Shewanella denitrificans OS217 hypothetical protein YP_563731.1 3267849 R 318161 CDS YP_563732.1 91794081 4019249 complement(3268724..3270238) 1 NC_007954.1 amino acid carrier protein 3270238 4019249 Sden_2730 Shewanella denitrificans OS217 amino acid carrier protein YP_563732.1 3268724 R 318161 CDS YP_563733.1 91794082 4019250 3270590..3272956 1 NC_007954.1 phosphoketolase 3272956 4019250 Sden_2731 Shewanella denitrificans OS217 phosphoketolase YP_563733.1 3270590 D 318161 CDS YP_563734.1 91794083 4019251 3273232..3274353 1 NC_007954.1 OmpA/MotB 3274353 4019251 Sden_2732 Shewanella denitrificans OS217 OmpA/MotB YP_563734.1 3273232 D 318161 CDS YP_563735.1 91794084 4019252 3274874..3276007 1 NC_007954.1 OmpA/MotB 3276007 4019252 Sden_2733 Shewanella denitrificans OS217 OmpA/MotB YP_563735.1 3274874 D 318161 CDS YP_563736.1 91794085 4019253 3276329..3277282 1 NC_007954.1 transaldolase B 3277282 4019253 Sden_2734 Shewanella denitrificans OS217 transaldolase B YP_563736.1 3276329 D 318161 CDS YP_563737.1 91794086 4019254 3277299..3278936 1 NC_007954.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3278936 pgi 4019254 pgi Shewanella denitrificans OS217 glucose-6-phosphate isomerase YP_563737.1 3277299 D 318161 CDS YP_563738.1 91794087 4019255 3279124..3279303 1 NC_007954.1 hypothetical protein 3279303 4019255 Sden_2736 Shewanella denitrificans OS217 hypothetical protein YP_563738.1 3279124 D 318161 CDS YP_563739.1 91794088 4019256 complement(3279463..3280008) 1 NC_007954.1 hemerythrin HHE cation binding region 3280008 4019256 Sden_2737 Shewanella denitrificans OS217 hemerythrin HHE cation binding region YP_563739.1 3279463 R 318161 CDS YP_563740.1 91794089 4019257 complement(3280188..3281468) 1 NC_007954.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3281468 4019257 Sden_2738 Shewanella denitrificans OS217 threonine synthase YP_563740.1 3280188 R 318161 CDS YP_563741.1 91794090 4019258 complement(3281574..3282560) 1 NC_007954.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3282560 4019258 Sden_2739 Shewanella denitrificans OS217 homoserine kinase YP_563741.1 3281574 R 318161 CDS YP_563742.1 91794091 4019259 complement(3282563..3285040) 1 NC_007954.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homeserine dehydrogenase I 3285040 thrA 4019259 thrA Shewanella denitrificans OS217 bifunctional aspartokinase I/homeserine dehydrogenase I YP_563742.1 3282563 R 318161 CDS YP_563743.1 91794092 4019260 3285755..3286237 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 3286237 4019260 Sden_2741 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_563743.1 3285755 D 318161 CDS YP_563744.1 91794093 4019261 3286497..3286871 1 NC_007954.1 hypothetical protein 3286871 4019261 Sden_2742 Shewanella denitrificans OS217 hypothetical protein YP_563744.1 3286497 D 318161 CDS YP_563745.1 91794094 4019262 complement(3286963..3287238) 1 NC_007954.1 Trp repressor 3287238 4019262 Sden_2743 Shewanella denitrificans OS217 Trp repressor YP_563745.1 3286963 R 318161 CDS YP_563746.1 91794095 4019263 3287506..3287955 1 NC_007954.1 cytochrome c, class II 3287955 4019263 Sden_2744 Shewanella denitrificans OS217 cytochrome c, class II YP_563746.1 3287506 D 318161 CDS YP_563747.1 91794096 4019264 complement(3288025..3288720) 1 NC_007954.1 cytochrome B561 3288720 4019264 Sden_2745 Shewanella denitrificans OS217 cytochrome B561 YP_563747.1 3288025 R 318161 CDS YP_563748.1 91794097 4019265 3289067..3289420 1 NC_007954.1 ribosomal subunit interface protein 3289420 4019265 Sden_2746 Shewanella denitrificans OS217 ribosomal subunit interface protein YP_563748.1 3289067 D 318161 CDS YP_563749.1 91794098 4019266 3289700..3291688 1 NC_007954.1 chorismate mutase 3291688 4019266 Sden_2747 Shewanella denitrificans OS217 chorismate mutase YP_563749.1 3289700 D 318161 CDS YP_563750.1 91794099 4019267 complement(3291792..3292127) 1 NC_007954.1 hypothetical protein 3292127 4019267 Sden_2748 Shewanella denitrificans OS217 hypothetical protein YP_563750.1 3291792 R 318161 CDS YP_563751.1 91794100 4019268 complement(3292244..3293398) 1 NC_007954.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 3293398 tyrA 4019268 tyrA Shewanella denitrificans OS217 bifunctional chorismate mutase/prephenate dehydrogenase YP_563751.1 3292244 R 318161 CDS YP_563752.1 91794101 4019269 complement(3293399..3294490) 1 NC_007954.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3294490 4019269 Sden_2750 Shewanella denitrificans OS217 phospho-2-dehydro-3-deoxyheptonate aldolase YP_563752.1 3293399 R 318161 CDS YP_563753.1 91794102 4019270 complement(3294684..3295037) 1 NC_007954.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3295037 rplS 4019270 rplS Shewanella denitrificans OS217 50S ribosomal protein L19 YP_563753.1 3294684 R 318161 CDS YP_563754.1 91794103 4019271 complement(3295072..3295818) 1 NC_007954.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3295818 trmD 4019271 trmD Shewanella denitrificans OS217 tRNA (guanine-N(1)-)-methyltransferase YP_563754.1 3295072 R 318161 CDS YP_563755.1 91794104 4019272 complement(3295834..3296364) 1 NC_007954.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3296364 rimM 4019272 rimM Shewanella denitrificans OS217 16S rRNA-processing protein RimM YP_563755.1 3295834 R 318161 CDS YP_563756.1 91794105 4019273 complement(3296386..3296637) 1 NC_007954.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3296637 rpsP 4019273 rpsP Shewanella denitrificans OS217 30S ribosomal protein S16 YP_563756.1 3296386 R 318161 CDS YP_563757.1 91794106 4019274 complement(3296928..3298301) 1 NC_007954.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 3298301 4019274 Sden_2755 Shewanella denitrificans OS217 signal recognition particle protein YP_563757.1 3296928 R 318161 CDS YP_563758.1 91794107 4019275 3298631..3299419 1 NC_007954.1 cytochrome c assembly protein 3299419 4019275 Sden_2756 Shewanella denitrificans OS217 cytochrome c assembly protein YP_563758.1 3298631 D 318161 CDS YP_563759.1 91794108 4019276 3299548..3300834 1 NC_007954.1 hypothetical protein 3300834 4019276 Sden_2757 Shewanella denitrificans OS217 hypothetical protein YP_563759.1 3299548 D 318161 CDS YP_563760.1 91794109 4019277 complement(3302415..3302927) 1 NC_007954.1 hypothetical protein 3302927 4019277 Sden_2758 Shewanella denitrificans OS217 hypothetical protein YP_563760.1 3302415 R 318161 CDS YP_563761.1 91794110 4019278 complement(3302939..3303415) 1 NC_007954.1 hypothetical protein 3303415 4019278 Sden_2759 Shewanella denitrificans OS217 hypothetical protein YP_563761.1 3302939 R 318161 CDS YP_563762.1 91794111 4019279 complement(3303537..3303977) 1 NC_007954.1 GCN5-related N-acetyltransferase 3303977 4019279 Sden_2760 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563762.1 3303537 R 318161 CDS YP_563763.1 91794112 4019280 complement(3304113..3304646) 1 NC_007954.1 hypothetical protein 3304646 4019280 Sden_2761 Shewanella denitrificans OS217 hypothetical protein YP_563763.1 3304113 R 318161 CDS YP_563764.1 91794113 4019281 complement(3304803..3305183) 1 NC_007954.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3305183 acpS 4019281 acpS Shewanella denitrificans OS217 4'-phosphopantetheinyl transferase YP_563764.1 3304803 R 318161 CDS YP_563765.1 91794114 4019282 complement(3305183..3305920) 1 NC_007954.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3305920 4019282 Sden_2763 Shewanella denitrificans OS217 pyridoxine 5'-phosphate synthase YP_563765.1 3305183 R 318161 CDS YP_563766.1 91794115 4019283 complement(3305995..3306717) 1 NC_007954.1 DNA repair protein RecO 3306717 4019283 Sden_2764 Shewanella denitrificans OS217 DNA repair protein RecO YP_563766.1 3305995 R 318161 CDS YP_563767.1 91794116 4019284 complement(3306781..3307785) 1 NC_007954.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3307785 era 4019284 era Shewanella denitrificans OS217 GTP-binding protein Era YP_563767.1 3306781 R 318161 CDS YP_563768.1 91794117 4019285 complement(3307782..3308462) 1 NC_007954.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3308462 rnc 4019285 rnc Shewanella denitrificans OS217 ribonuclease III YP_563768.1 3307782 R 318161 CDS YP_563769.1 91794118 4019286 complement(3308462..3309376) 1 NC_007954.1 peptidase S26A, signal peptidase I 3309376 4019286 Sden_2767 Shewanella denitrificans OS217 peptidase S26A, signal peptidase I YP_563769.1 3308462 R 318161 CDS YP_563770.1 91794119 4019287 complement(3309658..3311448) 1 NC_007954.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3311448 4019287 Sden_2768 Shewanella denitrificans OS217 GTP-binding protein LepA YP_563770.1 3309658 R 318161 CDS YP_563771.1 91794120 4019288 complement(3311576..3312109) 1 NC_007954.1 positive regulator of sigma(E), RseC/MucC 3312109 4019288 Sden_2769 Shewanella denitrificans OS217 positive regulator of sigma(E), RseC/MucC YP_563771.1 3311576 R 318161 CDS YP_563772.1 91794121 4019289 complement(3312106..3313038) 1 NC_007954.1 MucB/RseB 3313038 4019289 Sden_2770 Shewanella denitrificans OS217 MucB/RseB YP_563772.1 3312106 R 318161 CDS YP_563773.1 91794122 4019290 complement(3313142..3313762) 1 NC_007954.1 sigma-E factor negative regulatory protein 3313762 4019290 Sden_2771 Shewanella denitrificans OS217 sigma-E factor negative regulatory protein YP_563773.1 3313142 R 318161 CDS YP_563774.1 91794123 4019291 complement(3313787..3314365) 1 NC_007954.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 3314365 algU 4019291 algU Shewanella denitrificans OS217 RNA polymerase sigma factor AlgU YP_563774.1 3313787 R 318161 CDS YP_563775.1 91794124 4019292 3314579..3316192 1 NC_007954.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3316192 4019292 Sden_2773 Shewanella denitrificans OS217 L-aspartate oxidase YP_563775.1 3314579 D 318161 CDS YP_563776.1 91794125 4019293 complement(3316207..3316656) 1 NC_007954.1 hypothetical protein 3316656 4019293 Sden_2774 Shewanella denitrificans OS217 hypothetical protein YP_563776.1 3316207 R 318161 CDS YP_563777.1 91794126 4019294 complement(3316755..3317003) 1 NC_007954.1 hypothetical protein 3317003 4019294 Sden_2775 Shewanella denitrificans OS217 hypothetical protein YP_563777.1 3316755 R 318161 CDS YP_563778.1 91794127 4019295 complement(3317090..3318004) 1 NC_007954.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 3318004 nhaR 4019295 nhaR Shewanella denitrificans OS217 transcriptional activator NhaR YP_563778.1 3317090 R 318161 CDS YP_563779.1 91794128 4019296 complement(3318028..3318408) 1 NC_007954.1 hypothetical protein 3318408 4019296 Sden_2777 Shewanella denitrificans OS217 hypothetical protein YP_563779.1 3318028 R 318161 CDS YP_563780.1 91794129 4019297 complement(3318389..3319585) 1 NC_007954.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 3319585 nhaA 4019297 nhaA Shewanella denitrificans OS217 pH-dependent sodium/proton antiporter YP_563780.1 3318389 R 318161 CDS YP_563781.1 91794130 4019298 complement(3319716..3320510) 1 NC_007954.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3320510 thyA 4019298 thyA Shewanella denitrificans OS217 thymidylate synthase YP_563781.1 3319716 R 318161 CDS YP_563782.1 91794131 4019299 complement(3320606..3321400) 1 NC_007954.1 hypothetical protein 3321400 4019299 Sden_2780 Shewanella denitrificans OS217 hypothetical protein YP_563782.1 3320606 R 318161 CDS YP_563783.1 91794132 4019300 complement(3321527..3323851) 1 NC_007954.1 phosphoenolpyruvate-protein phosphotransferase 3323851 4019300 Sden_2781 Shewanella denitrificans OS217 phosphoenolpyruvate-protein phosphotransferase YP_563783.1 3321527 R 318161 CDS YP_563784.1 91794133 4019301 complement(3323880..3324398) 1 NC_007954.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3324398 4019301 Sden_2782 Shewanella denitrificans OS217 dinucleoside polyphosphate hydrolase YP_563784.1 3323880 R 318161 CDS YP_563785.1 91794134 4019302 3325133..3325801 1 NC_007954.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3325801 4019302 Sden_2783 Shewanella denitrificans OS217 DNA mismatch repair protein YP_563785.1 3325133 D 318161 CDS YP_563786.1 91794135 4019303 3326089..3327117 1 NC_007954.1 adenylate cyclase-related protein 3327117 4019303 Sden_2784 Shewanella denitrificans OS217 adenylate cyclase-related protein YP_563786.1 3326089 D 318161 CDS YP_563787.1 91794136 4019304 3327235..3328212 1 NC_007954.1 hypothetical protein 3328212 4019304 Sden_2785 Shewanella denitrificans OS217 hypothetical protein YP_563787.1 3327235 D 318161 CDS YP_563788.1 91794137 4019305 3328753..3329211 1 NC_007954.1 Appr-1-p processing 3329211 4019305 Sden_2786 Shewanella denitrificans OS217 Appr-1-p processing YP_563788.1 3328753 D 318161 CDS YP_563789.1 91794138 4019306 3329222..3330082 1 NC_007954.1 hypothetical protein 3330082 4019306 Sden_2787 Shewanella denitrificans OS217 hypothetical protein YP_563789.1 3329222 D 318161 CDS YP_563790.1 91794139 4019307 complement(3330805..3331710) 1 NC_007954.1 LysR, substrate-binding 3331710 4019307 Sden_2788 Shewanella denitrificans OS217 LysR, substrate-binding YP_563790.1 3330805 R 318161 CDS YP_563791.1 91794140 4019308 complement(3331957..3332319) 1 NC_007954.1 hypothetical protein 3332319 4019308 Sden_2789 Shewanella denitrificans OS217 hypothetical protein YP_563791.1 3331957 R 318161 CDS YP_563792.1 91794141 4019309 3333056..3337504 1 NC_007954.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3337504 gltB 4019309 gltB Shewanella denitrificans OS217 glutamate synthase subunit alpha YP_563792.1 3333056 D 318161 CDS YP_563793.1 91794142 4019310 3337509..3338966 1 NC_007954.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3338966 gltD 4019310 gltD Shewanella denitrificans OS217 glutamate synthase subunit beta YP_563793.1 3337509 D 318161 CDS YP_563794.1 91794143 4019311 3339123..3339968 1 NC_007954.1 methyltransferase type 11 3339968 4019311 Sden_2792 Shewanella denitrificans OS217 methyltransferase type 11 YP_563794.1 3339123 D 318161 CDS YP_563795.1 91794144 4019312 complement(3340099..3340704) 1 NC_007954.1 hypothetical protein 3340704 4019312 Sden_2793 Shewanella denitrificans OS217 hypothetical protein YP_563795.1 3340099 R 318161 CDS YP_563796.1 91794145 4019313 complement(3340923..3341579) 1 NC_007954.1 nitroreductase 3341579 4019313 Sden_2794 Shewanella denitrificans OS217 nitroreductase YP_563796.1 3340923 R 318161 CDS YP_563797.1 91794146 4019314 complement(3341769..3342071) 1 NC_007954.1 antibiotic biosynthesis monooxygenase 3342071 4019314 Sden_2795 Shewanella denitrificans OS217 antibiotic biosynthesis monooxygenase YP_563797.1 3341769 R 318161 CDS YP_563798.1 91794147 4019315 3342224..3342754 1 NC_007954.1 thiol-disulphide oxidoreductase DCC 3342754 4019315 Sden_2796 Shewanella denitrificans OS217 thiol-disulphide oxidoreductase DCC YP_563798.1 3342224 D 318161 CDS YP_563799.1 91794148 4019316 3342920..3344011 1 NC_007954.1 acyltransferase 3 3344011 4019316 Sden_2797 Shewanella denitrificans OS217 acyltransferase 3 YP_563799.1 3342920 D 318161 CDS YP_563800.1 91794149 4019317 complement(3344124..3344654) 1 NC_007954.1 GCN5-related N-acetyltransferase 3344654 4019317 Sden_2798 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_563800.1 3344124 R 318161 CDS YP_563801.1 91794150 4019318 complement(3344698..3345921) 1 NC_007954.1 major facilitator transporter 3345921 4019318 Sden_2799 Shewanella denitrificans OS217 major facilitator transporter YP_563801.1 3344698 R 318161 CDS YP_563802.1 91794151 4019319 3346024..3346908 1 NC_007954.1 LysR, substrate-binding 3346908 4019319 Sden_2800 Shewanella denitrificans OS217 LysR, substrate-binding YP_563802.1 3346024 D 318161 CDS YP_563803.1 91794152 4019320 3347237..3347929 1 NC_007954.1 methylthioadenosine nucleosidase 3347929 4019320 Sden_2801 Shewanella denitrificans OS217 methylthioadenosine nucleosidase YP_563803.1 3347237 D 318161 CDS YP_563804.1 91794153 4019321 3348158..3349156 1 NC_007954.1 CobD-related protein 3349156 4019321 Sden_2802 Shewanella denitrificans OS217 CobD-related protein YP_563804.1 3348158 D 318161 CDS YP_563805.1 91794154 4019322 3349252..3349641 1 NC_007954.1 hypothetical protein 3349641 4019322 Sden_2803 Shewanella denitrificans OS217 hypothetical protein YP_563805.1 3349252 D 318161 CDS YP_563806.1 91794155 4019323 3349643..3350269 1 NC_007954.1 hypothetical protein 3350269 4019323 Sden_2804 Shewanella denitrificans OS217 hypothetical protein YP_563806.1 3349643 D 318161 CDS YP_563807.1 91794156 4019324 3350271..3350744 1 NC_007954.1 hypothetical protein 3350744 4019324 Sden_2805 Shewanella denitrificans OS217 hypothetical protein YP_563807.1 3350271 D 318161 CDS YP_563808.1 91794157 4019325 complement(3351267..3352280) 1 NC_007954.1 transposase IS116/IS110/IS902 3352280 4019325 Sden_2806 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_563808.1 3351267 R 318161 CDS YP_563809.1 91794158 4019326 complement(3353197..3354429) 1 NC_007954.1 hypothetical protein 3354429 4019326 Sden_2807 Shewanella denitrificans OS217 hypothetical protein YP_563809.1 3353197 R 318161 CDS YP_563810.1 91794159 4019327 complement(3355097..3355498) 1 NC_007954.1 hypothetical protein 3355498 4019327 Sden_2808 Shewanella denitrificans OS217 hypothetical protein YP_563810.1 3355097 R 318161 CDS YP_563811.1 91794160 4019328 complement(3355950..3356654) 1 NC_007954.1 hypothetical protein 3356654 4019328 Sden_2809 Shewanella denitrificans OS217 hypothetical protein YP_563811.1 3355950 R 318161 CDS YP_563812.1 91794161 4019329 complement(3357494..3358690) 1 NC_007954.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3358690 4019329 Sden_2810 Shewanella denitrificans OS217 tyrosyl-tRNA synthetase YP_563812.1 3357494 R 318161 CDS YP_563813.1 91794162 4019330 3358906..3360324 1 NC_007954.1 peptidase M23B 3360324 4019330 Sden_2811 Shewanella denitrificans OS217 peptidase M23B YP_563813.1 3358906 D 318161 CDS YP_563814.1 91794163 4019331 3360333..3361445 1 NC_007954.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3361445 anmK 4019331 anmK Shewanella denitrificans OS217 anhydro-N-acetylmuramic acid kinase YP_563814.1 3360333 D 318161 CDS YP_563815.1 91794164 4019332 3361507..3361893 1 NC_007954.1 hypothetical protein 3361893 4019332 Sden_2813 Shewanella denitrificans OS217 hypothetical protein YP_563815.1 3361507 D 318161 CDS YP_563816.1 91794165 4019333 3361969..3362460 1 NC_007954.1 hypothetical protein 3362460 4019333 Sden_2814 Shewanella denitrificans OS217 hypothetical protein YP_563816.1 3361969 D 318161 CDS YP_563817.1 91794166 4019334 complement(3362568..3362918) 1 NC_007954.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3362918 4019334 Sden_2815 Shewanella denitrificans OS217 iron-sulfur cluster insertion protein ErpA YP_563817.1 3362568 R 318161 CDS YP_563818.1 91794167 4019335 complement(3362921..3363712) 1 NC_007954.1 hypothetical protein 3363712 4019335 Sden_2816 Shewanella denitrificans OS217 hypothetical protein YP_563818.1 3362921 R 318161 CDS YP_563819.1 91794168 4019336 3363831..3365555 1 NC_007954.1 Cl- channel, voltage gated 3365555 4019336 Sden_2817 Shewanella denitrificans OS217 Cl- channel, voltage gated YP_563819.1 3363831 D 318161 CDS YP_563820.1 91794169 4019337 3365695..3366714 1 NC_007954.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3366714 4019337 Sden_2818 Shewanella denitrificans OS217 aspartate carbamoyltransferase YP_563820.1 3365695 D 318161 CDS YP_563821.1 91794170 4019338 3366774..3368075 1 NC_007954.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3368075 4019338 Sden_2819 Shewanella denitrificans OS217 glutamate-1-semialdehyde aminotransferase YP_563821.1 3366774 D 318161 CDS YP_563822.1 91794171 4019339 3368318..3369565 1 NC_007954.1 citrate transporter 3369565 4019339 Sden_2820 Shewanella denitrificans OS217 citrate transporter YP_563822.1 3368318 D 318161 CDS YP_563823.1 91794172 4019340 complement(3369634..3370896) 1 NC_007954.1 general secretion pathway protein B 3370896 4019340 Sden_2821 Shewanella denitrificans OS217 general secretion pathway protein B YP_563823.1 3369634 R 318161 CDS YP_563824.1 91794173 4019341 complement(3370896..3372614) 1 NC_007954.1 peptidoglycan binding domain-containing protein 3372614 4019341 Sden_2822 Shewanella denitrificans OS217 peptidoglycan binding domain-containing protein YP_563824.1 3370896 R 318161 CDS YP_563825.1 91794174 4019342 3372756..3373997 1 NC_007954.1 polynucleotide adenylyltransferase region 3373997 4019342 Sden_2823 Shewanella denitrificans OS217 polynucleotide adenylyltransferase region YP_563825.1 3372756 D 318161 CDS YP_563826.1 91794175 4019343 3374261..3374527 1 NC_007954.1 major outer membrane lipoprotein 3374527 4019343 Sden_2824 Shewanella denitrificans OS217 major outer membrane lipoprotein YP_563826.1 3374261 D 318161 CDS YP_563827.1 91794176 4019344 complement(3374863..3375687) 1 NC_007954.1 methyltransferase type 11 3375687 4019344 Sden_2825 Shewanella denitrificans OS217 methyltransferase type 11 YP_563827.1 3374863 R 318161 CDS YP_563828.1 91794177 4019345 complement(3375861..3376661) 1 NC_007954.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 3376661 4019345 Sden_2826 Shewanella denitrificans OS217 UDP pyrophosphate phosphatase YP_563828.1 3375861 R 318161 CDS YP_563829.1 91794178 4019346 complement(3376795..3377295) 1 NC_007954.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3377295 4019346 Sden_2827 Shewanella denitrificans OS217 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_563829.1 3376795 R 318161 CDS YP_563830.1 91794179 4019347 complement(3377356..3377709) 1 NC_007954.1 dihydroneopterin aldolase 3377709 4019347 Sden_2828 Shewanella denitrificans OS217 dihydroneopterin aldolase YP_563830.1 3377356 R 318161 CDS YP_563831.1 91794180 4019348 3377955..3378569 1 NC_007954.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3378569 4019348 Sden_2829 Shewanella denitrificans OS217 glycerol-3-phosphate acyltransferase PlsY YP_563831.1 3377955 D 318161 CDS YP_563832.1 91794181 4019349 complement(3378682..3379698) 1 NC_007954.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 3379698 4019349 Sden_2830 Shewanella denitrificans OS217 DNA-binding/iron metalloprotein/AP endonuclease YP_563832.1 3378682 R 318161 CDS YP_563833.1 91794182 4019350 3379972..3380187 1 NC_007954.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3380187 rpsU 4019350 rpsU Shewanella denitrificans OS217 30S ribosomal protein S21 YP_563833.1 3379972 D 318161 CDS YP_563834.1 91794183 4019351 3380195..3380638 1 NC_007954.1 hypothetical protein 3380638 4019351 Sden_2832 Shewanella denitrificans OS217 hypothetical protein YP_563834.1 3380195 D 318161 CDS YP_563835.1 91794184 4019352 3380733..3382457 1 NC_007954.1 DNA primase 3382457 4019352 Sden_2833 Shewanella denitrificans OS217 DNA primase YP_563835.1 3380733 D 318161 CDS YP_563836.1 91794185 4019353 3382604..3384457 1 NC_007954.1 RNA polymerase sigma factor RpoD-like protein 3384457 4019353 Sden_2834 Shewanella denitrificans OS217 RNA polymerase sigma factor RpoD-like protein YP_563836.1 3382604 D 318161 CDS YP_563837.1 91794186 4019355 3385001..3385360 1 NC_007954.1 hypothetical protein 3385360 4019355 Sden_2835 Shewanella denitrificans OS217 hypothetical protein YP_563837.1 3385001 D 318161 CDS YP_563838.1 91794187 4019356 3385711..3386052 1 NC_007954.1 hypothetical protein 3386052 4019356 Sden_2836 Shewanella denitrificans OS217 hypothetical protein YP_563838.1 3385711 D 318161 CDS YP_563839.1 91794188 4019357 complement(3386176..3387387) 1 NC_007954.1 NnrS 3387387 4019357 Sden_2837 Shewanella denitrificans OS217 NnrS YP_563839.1 3386176 R 318161 CDS YP_563840.1 91794189 4019358 complement(3387615..3389108) 1 NC_007954.1 deoxyribodipyrimidine photolyase 3389108 4019358 Sden_2838 Shewanella denitrificans OS217 deoxyribodipyrimidine photolyase YP_563840.1 3387615 R 318161 CDS YP_563841.1 91794190 4019359 complement(3389098..3390060) 1 NC_007954.1 hypothetical protein 3390060 4019359 Sden_2839 Shewanella denitrificans OS217 hypothetical protein YP_563841.1 3389098 R 318161 CDS YP_563842.1 91794191 4019360 complement(3390259..3391194) 1 NC_007954.1 hypothetical protein 3391194 4019360 Sden_2840 Shewanella denitrificans OS217 hypothetical protein YP_563842.1 3390259 R 318161 CDS YP_563843.1 91794192 4019361 3391412..3391888 1 NC_007954.1 hypothetical protein 3391888 4019361 Sden_2841 Shewanella denitrificans OS217 hypothetical protein YP_563843.1 3391412 D 318161 CDS YP_563844.1 91794193 4019362 complement(3392065..3392340) 1 NC_007954.1 hypothetical protein 3392340 4019362 Sden_2842 Shewanella denitrificans OS217 hypothetical protein YP_563844.1 3392065 R 318161 CDS YP_563845.1 91794194 4019363 complement(3392649..3393572) 1 NC_007954.1 polysaccharide deacetylase 3393572 4019363 Sden_2843 Shewanella denitrificans OS217 polysaccharide deacetylase YP_563845.1 3392649 R 318161 CDS YP_563846.1 91794195 4019364 complement(3393672..3394427) 1 NC_007954.1 ThiJ/PfpI 3394427 4019364 Sden_2844 Shewanella denitrificans OS217 ThiJ/PfpI YP_563846.1 3393672 R 318161 CDS YP_563847.1 91794196 4019365 complement(3394568..3395134) 1 NC_007954.1 hypothetical protein 3395134 4019365 Sden_2845 Shewanella denitrificans OS217 hypothetical protein YP_563847.1 3394568 R 318161 CDS YP_563848.1 91794197 4019366 complement(3395201..3396559) 1 NC_007954.1 ATP-binding region, ATPase-like protein 3396559 4019366 Sden_2846 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_563848.1 3395201 R 318161 CDS YP_563849.1 91794198 4019367 complement(3396556..3398046) 1 NC_007954.1 sigma-54 factor, interaction region 3398046 4019367 Sden_2847 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563849.1 3396556 R 318161 CDS YP_563850.1 91794199 4019368 complement(3398196..3399404) 1 NC_007954.1 hypothetical protein 3399404 4019368 Sden_2848 Shewanella denitrificans OS217 hypothetical protein YP_563850.1 3398196 R 318161 CDS YP_563851.1 91794200 4019369 complement(3399414..3400724) 1 NC_007954.1 hypothetical protein 3400724 4019369 Sden_2849 Shewanella denitrificans OS217 hypothetical protein YP_563851.1 3399414 R 318161 CDS YP_563852.1 91794201 4019370 complement(3400735..3401457) 1 NC_007954.1 ABC transporter related 3401457 4019370 Sden_2850 Shewanella denitrificans OS217 ABC transporter related YP_563852.1 3400735 R 318161 CDS YP_563853.1 91794202 4019371 complement(3401470..3401715) 1 NC_007954.1 hypothetical protein 3401715 4019371 Sden_2851 Shewanella denitrificans OS217 hypothetical protein YP_563853.1 3401470 R 318161 CDS YP_563854.1 91794203 4019372 complement(3401722..3402981) 1 NC_007954.1 secretion protein HlyD 3402981 4019372 Sden_2852 Shewanella denitrificans OS217 secretion protein HlyD YP_563854.1 3401722 R 318161 CDS YP_563855.1 91794204 4019373 complement(3403256..3404140) 1 NC_007954.1 periplasmic binding protein 3404140 4019373 Sden_2853 Shewanella denitrificans OS217 periplasmic binding protein YP_563855.1 3403256 R 318161 CDS YP_563856.1 91794205 4019374 3404308..3404850 1 NC_007954.1 isochorismatase hydrolase 3404850 4019374 Sden_2854 Shewanella denitrificans OS217 isochorismatase hydrolase YP_563856.1 3404308 D 318161 CDS YP_563857.1 91794206 4019375 complement(3404906..3405379) 1 NC_007954.1 ribosomal-protein-alanine acetyltransferase 3405379 4019375 Sden_2855 Shewanella denitrificans OS217 ribosomal-protein-alanine acetyltransferase YP_563857.1 3404906 R 318161 CDS YP_563858.1 91794207 4019376 complement(3405424..3405774) 1 NC_007954.1 hypothetical protein 3405774 4019376 Sden_2856 Shewanella denitrificans OS217 hypothetical protein YP_563858.1 3405424 R 318161 CDS YP_563859.1 91794208 4019377 3406093..3406536 1 NC_007954.1 ABC-type phosphate transport system, periplasmic component 3406536 4019377 Sden_2857 Shewanella denitrificans OS217 ABC-type phosphate transport system, periplasmic component YP_563859.1 3406093 D 318161 CDS YP_563860.1 91794209 4019378 3406554..3407747 1 NC_007954.1 hypothetical protein 3407747 4019378 Sden_2858 Shewanella denitrificans OS217 hypothetical protein YP_563860.1 3406554 D 318161 CDS YP_563861.1 91794210 4019382 complement(3414359..3415165) 1 NC_007954.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 3415165 4019382 Sden_2859 Shewanella denitrificans OS217 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_563861.1 3414359 R 318161 CDS YP_563862.1 91794211 4019383 3415258..3415710 1 NC_007954.1 hypothetical protein 3415710 4019383 Sden_2860 Shewanella denitrificans OS217 hypothetical protein YP_563862.1 3415258 D 318161 CDS YP_563863.1 91794212 4019384 complement(3415861..3418449) 1 NC_007954.1 ATPase AAA-2 3418449 4019384 Sden_2861 Shewanella denitrificans OS217 ATPase AAA-2 YP_563863.1 3415861 R 318161 CDS YP_563864.1 91794213 4019385 complement(3418632..3419417) 1 NC_007954.1 hypothetical protein 3419417 4019385 Sden_2862 Shewanella denitrificans OS217 hypothetical protein YP_563864.1 3418632 R 318161 CDS YP_563865.1 91794214 4019386 complement(3419700..3420674) 1 NC_007954.1 pseudouridine synthase, RluD 3420674 4019386 Sden_2863 Shewanella denitrificans OS217 pseudouridine synthase, RluD YP_563865.1 3419700 R 318161 CDS YP_563866.1 91794215 4019387 3420799..3421560 1 NC_007954.1 lipoprotein 3421560 4019387 Sden_2864 Shewanella denitrificans OS217 lipoprotein YP_563866.1 3420799 D 318161 CDS YP_563867.1 91794216 4019390 3422632..3423222 1 NC_007954.1 hypothetical protein 3423222 4019390 Sden_2865 Shewanella denitrificans OS217 hypothetical protein YP_563867.1 3422632 D 318161 CDS YP_563868.1 91794217 4019391 3423300..3423761 1 NC_007954.1 DNA polymerase III chi subunit, HolC 3423761 4019391 Sden_2866 Shewanella denitrificans OS217 DNA polymerase III chi subunit, HolC YP_563868.1 3423300 D 318161 CDS YP_563869.1 91794218 4019392 3423795..3426701 1 NC_007954.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3426701 valS 4019392 valS Shewanella denitrificans OS217 valyl-tRNA synthetase YP_563869.1 3423795 D 318161 CDS YP_563870.1 91794219 4019393 complement(3426783..3428405) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 3428405 4019393 Sden_2868 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_563870.1 3426783 R 318161 CDS YP_563871.1 91794220 4019394 complement(3428844..3429512) 1 NC_007954.1 hypothetical protein 3429512 4019394 Sden_2869 Shewanella denitrificans OS217 hypothetical protein YP_563871.1 3428844 R 318161 CDS YP_563872.1 91794221 4019395 3430475..3430942 1 NC_007954.1 hypothetical protein 3430942 4019395 Sden_2870 Shewanella denitrificans OS217 hypothetical protein YP_563872.1 3430475 D 318161 CDS YP_563873.1 91794222 4019396 3431089..3431946 1 NC_007954.1 hypothetical protein 3431946 4019396 Sden_2871 Shewanella denitrificans OS217 hypothetical protein YP_563873.1 3431089 D 318161 CDS YP_563874.1 91794223 4019397 3432567..3435197 1 NC_007954.1 hypothetical protein 3435197 4019397 Sden_2872 Shewanella denitrificans OS217 hypothetical protein YP_563874.1 3432567 D 318161 CDS YP_563875.1 91794224 4019398 3435293..3435742 1 NC_007954.1 hypothetical protein 3435742 4019398 Sden_2873 Shewanella denitrificans OS217 hypothetical protein YP_563875.1 3435293 D 318161 CDS YP_563876.1 91794225 4019399 3435844..3436182 1 NC_007954.1 metal-binding protein 3436182 4019399 Sden_2874 Shewanella denitrificans OS217 metal-binding protein YP_563876.1 3435844 D 318161 CDS YP_563877.1 91794226 4019400 3436310..3437863 1 NC_007954.1 major facilitator transporter 3437863 4019400 Sden_2875 Shewanella denitrificans OS217 major facilitator transporter YP_563877.1 3436310 D 318161 CDS YP_563878.1 91794227 4019401 complement(3437860..3438564) 1 NC_007954.1 pseudouridine synthase, Rsu 3438564 4019401 Sden_2876 Shewanella denitrificans OS217 pseudouridine synthase, Rsu YP_563878.1 3437860 R 318161 CDS YP_563879.1 91794228 4019402 3438684..3441308 1 NC_007954.1 protein-P-II uridylyltransferase 3441308 4019402 Sden_2877 Shewanella denitrificans OS217 protein-P-II uridylyltransferase YP_563879.1 3438684 D 318161 CDS YP_563880.1 91794229 4019403 3441354..3441836 1 NC_007954.1 hypothetical protein 3441836 4019403 Sden_2878 Shewanella denitrificans OS217 hypothetical protein YP_563880.1 3441354 D 318161 CDS YP_563881.1 91794230 4019404 3441904..3442158 1 NC_007954.1 hypothetical protein 3442158 4019404 Sden_2879 Shewanella denitrificans OS217 hypothetical protein YP_563881.1 3441904 D 318161 CDS YP_563882.1 91794231 4019405 complement(3442310..3442630) 1 NC_007954.1 hypothetical protein 3442630 4019405 Sden_2880 Shewanella denitrificans OS217 hypothetical protein YP_563882.1 3442310 R 318161 CDS YP_563883.1 91794232 4019406 complement(3442743..3443702) 1 NC_007954.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 3443702 4019406 Sden_2881 Shewanella denitrificans OS217 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_563883.1 3442743 R 318161 CDS YP_563884.1 91794233 4019407 complement(3443758..3444537) 1 NC_007954.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 3444537 djlA 4019407 djlA Shewanella denitrificans OS217 Dna-J like membrane chaperone protein YP_563884.1 3443758 R 318161 CDS YP_563885.1 91794234 4019408 complement(3444556..3445275) 1 NC_007954.1 nucleotidyl transferase 3445275 4019408 Sden_2883 Shewanella denitrificans OS217 nucleotidyl transferase YP_563885.1 3444556 R 318161 CDS YP_563886.1 91794235 4019409 complement(3445272..3446411) 1 NC_007954.1 aminoglycoside phosphotransferase 3446411 4019409 Sden_2884 Shewanella denitrificans OS217 aminoglycoside phosphotransferase YP_563886.1 3445272 R 318161 CDS YP_563887.1 91794236 4019410 3446555..3448855 1 NC_007954.1 organic solvent tolerance protein 3448855 4019410 Sden_2885 Shewanella denitrificans OS217 organic solvent tolerance protein YP_563887.1 3446555 D 318161 CDS YP_563888.1 91794237 4019411 3449000..3450304 1 NC_007954.1 PpiC-type peptidyl-prolyl cis-trans isomerase 3450304 4019411 Sden_2886 Shewanella denitrificans OS217 PpiC-type peptidyl-prolyl cis-trans isomerase YP_563888.1 3449000 D 318161 CDS YP_563889.1 91794238 4019412 3450314..3451300 1 NC_007954.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3451300 pdxA 4019412 pdxA Shewanella denitrificans OS217 4-hydroxythreonine-4-phosphate dehydrogenase YP_563889.1 3450314 D 318161 CDS YP_563890.1 91794239 4019413 3451307..3452110 1 NC_007954.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3452110 ksgA 4019413 ksgA Shewanella denitrificans OS217 dimethyladenosine transferase YP_563890.1 3451307 D 318161 CDS YP_563891.1 91794240 4019414 3452187..3452567 1 NC_007954.1 protein associated with Co2+ and Mg2+ efflux; ApaG 3452567 apaG 4019414 apaG Shewanella denitrificans OS217 ApaG YP_563891.1 3452187 D 318161 CDS YP_563892.1 91794241 4019415 3452567..3453388 1 NC_007954.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3453388 apaH 4019415 apaH Shewanella denitrificans OS217 diadenosine tetraphosphatase YP_563892.1 3452567 D 318161 CDS YP_563893.1 91794242 4019416 3453510..3455531 1 NC_007954.1 chemotaxis sensory transducer 3455531 4019416 Sden_2891 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_563893.1 3453510 D 318161 CDS YP_563894.1 91794243 4019417 complement(3455643..3456290) 1 NC_007954.1 NADH-flavin reductase 3456290 4019417 Sden_2892 Shewanella denitrificans OS217 NADH-flavin reductase YP_563894.1 3455643 R 318161 CDS YP_563895.1 91794244 4019418 3456420..3457316 1 NC_007954.1 LysR, substrate-binding 3457316 4019418 Sden_2893 Shewanella denitrificans OS217 LysR, substrate-binding YP_563895.1 3456420 D 318161 CDS YP_563896.1 91794245 4019419 complement(3457374..3458312) 1 NC_007954.1 Dyp-type peroxidase 3458312 4019419 Sden_2894 Shewanella denitrificans OS217 Dyp-type peroxidase YP_563896.1 3457374 R 318161 CDS YP_563897.1 91794246 4019421 complement(3458914..3459675) 1 NC_007954.1 oxidoreductase FAD/NAD(P)-binding 3459675 4019421 Sden_2896 Shewanella denitrificans OS217 oxidoreductase FAD/NAD(P)-binding YP_563897.1 3458914 R 318161 CDS YP_563898.1 91794247 4019422 complement(3459835..3460461) 1 NC_007954.1 hypothetical protein 3460461 4019422 Sden_2897 Shewanella denitrificans OS217 hypothetical protein YP_563898.1 3459835 R 318161 CDS YP_563899.1 91794248 4019423 3460804..3461019 1 NC_007954.1 hypothetical protein 3461019 4019423 Sden_2898 Shewanella denitrificans OS217 hypothetical protein YP_563899.1 3460804 D 318161 CDS YP_563900.1 91794249 4019424 complement(3461181..3462986) 1 NC_007954.1 ABC transporter related 3462986 4019424 Sden_2899 Shewanella denitrificans OS217 ABC transporter related YP_563900.1 3461181 R 318161 CDS YP_563901.1 91794250 4019425 3463315..3463491 1 NC_007954.1 hypothetical protein 3463491 4019425 Sden_2900 Shewanella denitrificans OS217 hypothetical protein YP_563901.1 3463315 D 318161 CDS YP_563902.1 91794251 4019426 complement(3463578..3464633) 1 NC_007954.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3464633 4019426 Sden_2901 Shewanella denitrificans OS217 phospho-2-dehydro-3-deoxyheptonate aldolase YP_563902.1 3463578 R 318161 CDS YP_563903.1 91794252 4019427 complement(3464912..3466042) 1 NC_007954.1 tetratricopeptide TPR_2 3466042 4019427 Sden_2902 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_563903.1 3464912 R 318161 CDS YP_563904.1 91794253 4019428 complement(3466317..3466718) 1 NC_007954.1 hypothetical protein 3466718 4019428 Sden_2903 Shewanella denitrificans OS217 hypothetical protein YP_563904.1 3466317 R 318161 CDS YP_563905.1 91794254 4019429 complement(3466811..3468061) 1 NC_007954.1 Rh-like protein/ammonium transporter 3468061 4019429 Sden_2904 Shewanella denitrificans OS217 Rh-like protein/ammonium transporter YP_563905.1 3466811 R 318161 CDS YP_563906.1 91794255 4019430 complement(3468071..3468409) 1 NC_007954.1 nitrogen regulatory protein P-II 3468409 4019430 Sden_2905 Shewanella denitrificans OS217 nitrogen regulatory protein P-II YP_563906.1 3468071 R 318161 CDS YP_563907.1 91794256 4019431 complement(3468765..3471386) 1 NC_007954.1 endonuclease/exonuclease/phosphatase 3471386 4019431 Sden_2906 Shewanella denitrificans OS217 endonuclease/exonuclease/phosphatase YP_563907.1 3468765 R 318161 CDS YP_563908.1 91794257 4019432 complement(3471933..3472304) 1 NC_007954.1 hypothetical protein 3472304 4019432 Sden_2907 Shewanella denitrificans OS217 hypothetical protein YP_563908.1 3471933 R 318161 CDS YP_563909.1 91794258 4019433 3472511..3473476 1 NC_007954.1 Mg2+ transporter protein, CorA-like protein 3473476 4019433 Sden_2908 Shewanella denitrificans OS217 Mg2+ transporter protein, CorA-like protein YP_563909.1 3472511 D 318161 CDS YP_563910.1 91794259 4019434 complement(3473594..3474364) 1 NC_007954.1 peptidylprolyl isomerase, FKBP-type 3474364 4019434 Sden_2909 Shewanella denitrificans OS217 peptidylprolyl isomerase, FKBP-type YP_563910.1 3473594 R 318161 CDS YP_563911.1 91794260 4019435 3474552..3475508 1 NC_007954.1 WD-40 repeat-containing protein 3475508 4019435 Sden_2910 Shewanella denitrificans OS217 WD-40 repeat-containing protein YP_563911.1 3474552 D 318161 CDS YP_563912.1 91794261 4019436 3475533..3475745 1 NC_007954.1 SlyX 3475745 4019436 Sden_2911 Shewanella denitrificans OS217 SlyX YP_563912.1 3475533 D 318161 CDS YP_563913.1 91794262 4019437 3475876..3476382 1 NC_007954.1 peptide deformylase 3476382 4019437 Sden_2912 Shewanella denitrificans OS217 peptide deformylase YP_563913.1 3475876 D 318161 CDS YP_563914.1 91794263 4019438 3476379..3477740 1 NC_007954.1 tetratricopeptide TPR_2 3477740 4019438 Sden_2913 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_563914.1 3476379 D 318161 CDS YP_563915.1 91794264 4019439 3477807..3478412 1 NC_007954.1 hypothetical protein 3478412 4019439 Sden_2914 Shewanella denitrificans OS217 hypothetical protein YP_563915.1 3477807 D 318161 CDS YP_563916.1 91794265 4019440 3478492..3481128 1 NC_007954.1 peptidase M1, membrane alanine aminopeptidase 3481128 4019440 Sden_2915 Shewanella denitrificans OS217 peptidase M1, membrane alanine aminopeptidase YP_563916.1 3478492 D 318161 CDS YP_563917.1 91794266 4019441 complement(3481298..3481753) 1 NC_007954.1 hypothetical protein 3481753 4019441 Sden_2916 Shewanella denitrificans OS217 hypothetical protein YP_563917.1 3481298 R 318161 CDS YP_563918.1 91794267 4019442 complement(3482201..3483061) 1 NC_007954.1 hypothetical protein 3483061 4019442 Sden_2917 Shewanella denitrificans OS217 hypothetical protein YP_563918.1 3482201 R 318161 CDS YP_563919.1 91794268 4019443 complement(3484456..3485826) 1 NC_007954.1 hypothetical protein 3485826 4019443 Sden_2918 Shewanella denitrificans OS217 hypothetical protein YP_563919.1 3484456 R 318161 CDS YP_563920.1 91794269 4019444 3486348..3488162 1 NC_007954.1 transcriptional regulatory protein-like protein 3488162 4019444 Sden_2919 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_563920.1 3486348 D 318161 CDS YP_563921.1 91794270 4019445 complement(3488244..3489899) 1 NC_007954.1 hypothetical protein 3489899 4019445 Sden_2920 Shewanella denitrificans OS217 hypothetical protein YP_563921.1 3488244 R 318161 CDS YP_563922.1 91794271 4019446 complement(3490090..3490476) 1 NC_007954.1 hypothetical protein 3490476 4019446 Sden_2921 Shewanella denitrificans OS217 hypothetical protein YP_563922.1 3490090 R 318161 CDS YP_563923.1 91794272 4019447 complement(3490554..3491036) 1 NC_007954.1 dihydrofolate reductase 3491036 4019447 Sden_2922 Shewanella denitrificans OS217 dihydrofolate reductase YP_563923.1 3490554 R 318161 CDS YP_563924.1 91794273 4019448 complement(3491060..3491527) 1 NC_007954.1 hypothetical protein 3491527 4019448 Sden_2923 Shewanella denitrificans OS217 hypothetical protein YP_563924.1 3491060 R 318161 CDS YP_563925.1 91794274 4019449 complement(3491527..3492288) 1 NC_007954.1 hypothetical protein 3492288 4019449 Sden_2924 Shewanella denitrificans OS217 hypothetical protein YP_563925.1 3491527 R 318161 CDS YP_563926.1 91794275 4019450 complement(3492313..3493479) 1 NC_007954.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3493479 obgE 4019450 obgE Shewanella denitrificans OS217 GTPase ObgE YP_563926.1 3492313 R 318161 CDS YP_563927.1 91794276 4019451 complement(3493721..3493975) 1 NC_007954.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3493975 rpmA 4019451 rpmA Shewanella denitrificans OS217 50S ribosomal protein L27 YP_563927.1 3493721 R 318161 CDS YP_563928.1 91794277 4019452 complement(3493992..3494303) 1 NC_007954.1 50S ribosomal protein L21 3494303 rplU 4019452 rplU Shewanella denitrificans OS217 50S ribosomal protein L21 YP_563928.1 3493992 R 318161 CDS YP_563929.1 91794278 4019453 3494663..3495634 1 NC_007954.1 trans-hexaprenyltranstransferase 3495634 4019453 Sden_2928 Shewanella denitrificans OS217 trans-hexaprenyltranstransferase YP_563929.1 3494663 D 318161 CDS YP_563930.1 91794279 4019454 complement(3495757..3496416) 1 NC_007954.1 uracil-DNA glycosylase 3496416 4019454 Sden_2929 Shewanella denitrificans OS217 uracil-DNA glycosylase YP_563930.1 3495757 R 318161 CDS YP_563931.1 91794280 4019455 complement(3496489..3497106) 1 NC_007954.1 lysine exporter protein LysE/YggA 3497106 4019455 Sden_2930 Shewanella denitrificans OS217 lysine exporter protein LysE/YggA YP_563931.1 3496489 R 318161 CDS YP_563932.1 91794281 4019456 complement(3497247..3499859) 1 NC_007954.1 TonB-dependent receptor 3499859 4019456 Sden_2931 Shewanella denitrificans OS217 TonB-dependent receptor YP_563932.1 3497247 R 318161 CDS YP_563933.1 91794282 4019457 3500240..3501727 1 NC_007954.1 sigma-54 factor, interaction region 3501727 4019457 Sden_2932 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563933.1 3500240 D 318161 CDS YP_563934.1 91794283 4019458 3501927..3503411 1 NC_007954.1 4Fe-4S ferredoxin, iron-sulfur binding 3503411 4019458 Sden_2933 Shewanella denitrificans OS217 4Fe-4S ferredoxin, iron-sulfur binding YP_563934.1 3501927 D 318161 CDS YP_563935.1 91794284 4019459 3503649..3505256 1 NC_007954.1 AMP-dependent synthetase and ligase 3505256 4019459 Sden_2934 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_563935.1 3503649 D 318161 CDS YP_563936.1 91794285 4019460 complement(3506344..3506826) 1 NC_007954.1 isoprenylcysteine carboxyl methyltransferase 3506826 4019460 Sden_2935 Shewanella denitrificans OS217 isoprenylcysteine carboxyl methyltransferase YP_563936.1 3506344 R 318161 CDS YP_563937.1 91794286 4019461 complement(3506867..3508648) 1 NC_007954.1 ABC transporter, ATP-binding/permease protein 3508648 4019461 Sden_2936 Shewanella denitrificans OS217 ABC transporter, ATP-binding/permease protein YP_563937.1 3506867 R 318161 CDS YP_563938.1 91794287 4019462 3508810..3509961 1 NC_007954.1 rRNA (guanine-N(2)-)-methyltransferase 3509961 4019462 Sden_2937 Shewanella denitrificans OS217 rRNA (guanine-N(2)-)-methyltransferase YP_563938.1 3508810 D 318161 CDS YP_563939.1 91794288 4019463 3510244..3511137 1 NC_007954.1 universal stress protein 3511137 4019463 Sden_2938 Shewanella denitrificans OS217 universal stress protein YP_563939.1 3510244 D 318161 CDS YP_563940.1 91794289 4019464 3511339..3514119 1 NC_007954.1 ATPase, E1-E2 type 3514119 4019464 Sden_2939 Shewanella denitrificans OS217 ATPase, E1-E2 type YP_563940.1 3511339 D 318161 CDS YP_563941.1 91794290 4019465 3514335..3516467 1 NC_007954.1 prolyl oligopeptidase 3516467 4019465 Sden_2940 Shewanella denitrificans OS217 prolyl oligopeptidase YP_563941.1 3514335 D 318161 CDS YP_563942.1 91794291 4019466 complement(3516551..3516943) 1 NC_007954.1 hypothetical protein 3516943 4019466 Sden_2941 Shewanella denitrificans OS217 hypothetical protein YP_563942.1 3516551 R 318161 CDS YP_563943.1 91794292 4019467 3517350..3518051 1 NC_007954.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3518051 4019467 Sden_2942 Shewanella denitrificans OS217 tRNA guanosine-2'-O-methyltransferase YP_563943.1 3517350 D 318161 CDS YP_563944.1 91794293 4019468 3518110..3519150 1 NC_007954.1 aminoglycoside phosphotransferase 3519150 4019468 Sden_2943 Shewanella denitrificans OS217 aminoglycoside phosphotransferase YP_563944.1 3518110 D 318161 CDS YP_563945.1 91794294 4019469 3520217..3520891 1 NC_007954.1 hypothetical protein 3520891 4019469 Sden_2944 Shewanella denitrificans OS217 hypothetical protein YP_563945.1 3520217 D 318161 CDS YP_563946.1 91794295 4019470 complement(3521212..3521589) 1 NC_007954.1 hypothetical protein 3521589 4019470 Sden_2945 Shewanella denitrificans OS217 hypothetical protein YP_563946.1 3521212 R 318161 CDS YP_563947.1 91794296 4019471 complement(3521824..3522252) 1 NC_007954.1 rod shape-determining-related protein 3522252 4019471 Sden_2946 Shewanella denitrificans OS217 rod shape-determining-related protein YP_563947.1 3521824 R 318161 CDS YP_563948.1 91794297 4019472 complement(3522364..3523206) 1 NC_007954.1 hypothetical protein 3523206 4019472 Sden_2947 Shewanella denitrificans OS217 hypothetical protein YP_563948.1 3522364 R 318161 CDS YP_563949.1 91794298 4019473 complement(3525711..3526028) 1 NC_007954.1 hypothetical protein 3526028 4019473 Sden_2948 Shewanella denitrificans OS217 hypothetical protein YP_563949.1 3525711 R 318161 CDS YP_563950.1 91794299 4019474 complement(3526639..3528051) 1 NC_007954.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 3528051 4019474 Sden_2949 Shewanella denitrificans OS217 ATP-dependent RNA helicase DbpA YP_563950.1 3526639 R 318161 CDS YP_563951.1 91794300 4019475 complement(3528184..3529050) 1 NC_007954.1 Pirin-like protein 3529050 4019475 Sden_2950 Shewanella denitrificans OS217 Pirin-like protein YP_563951.1 3528184 R 318161 CDS YP_563952.1 91794301 4019476 complement(3529303..3531372) 1 NC_007954.1 hypothetical protein 3531372 4019476 Sden_2951 Shewanella denitrificans OS217 hypothetical protein YP_563952.1 3529303 R 318161 CDS YP_563953.1 91794302 4019477 complement(3531527..3532786) 1 NC_007954.1 DEAD/DEAH box helicase-like protein 3532786 4019477 Sden_2952 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_563953.1 3531527 R 318161 CDS YP_563954.1 91794303 4019478 complement(3532853..3533317) 1 NC_007954.1 hypothetical protein 3533317 4019478 Sden_2953 Shewanella denitrificans OS217 hypothetical protein YP_563954.1 3532853 R 318161 CDS YP_563955.1 91794304 4019479 3534254..3534988 1 NC_007954.1 hypothetical protein 3534988 4019479 Sden_2954 Shewanella denitrificans OS217 hypothetical protein YP_563955.1 3534254 D 318161 CDS YP_563956.1 91794305 4019480 3535132..3536625 1 NC_007954.1 chemotaxis sensory transducer 3536625 4019480 Sden_2955 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_563956.1 3535132 D 318161 CDS YP_563957.1 91794306 4019481 3536804..3537760 1 NC_007954.1 glycine cleavage T protein (aminomethyl transferase) 3537760 4019481 Sden_2956 Shewanella denitrificans OS217 glycine cleavage T protein (aminomethyl transferase) YP_563957.1 3536804 D 318161 CDS YP_563958.1 91794307 4019482 complement(3538187..3538852) 1 NC_007954.1 hypothetical protein 3538852 4019482 Sden_2957 Shewanella denitrificans OS217 hypothetical protein YP_563958.1 3538187 R 318161 CDS YP_563959.1 91794308 4019483 complement(3539567..3541660) 1 NC_007954.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3541660 4019483 Sden_2958 Shewanella denitrificans OS217 elongation factor G YP_563959.1 3539567 R 318161 CDS YP_563960.1 91794309 4019484 complement(3541966..3542844) 1 NC_007954.1 GGDEF domain-containing protein 3542844 4019484 Sden_2959 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563960.1 3541966 R 318161 CDS YP_563961.1 91794310 4019485 complement(3542841..3544043) 1 NC_007954.1 transposase, IS4 3544043 4019485 Sden_2960 Shewanella denitrificans OS217 transposase, IS4 YP_563961.1 3542841 R 318161 CDS YP_563962.1 91794311 4019486 complement(3544142..3544756) 1 NC_007954.1 GGDEF domain-containing protein 3544756 4019486 Sden_2961 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_563962.1 3544142 R 318161 CDS YP_563963.1 91794312 4019487 complement(3545051..3549604) 1 NC_007954.1 carbamoyl-phosphate synthase L chain, ATP-binding 3549604 4019487 Sden_2962 Shewanella denitrificans OS217 carbamoyl-phosphate synthase L chain, ATP-binding YP_563963.1 3545051 R 318161 CDS YP_563964.1 91794313 4019488 3549729..3550640 1 NC_007954.1 LysR, substrate-binding 3550640 4019488 Sden_2963 Shewanella denitrificans OS217 LysR, substrate-binding YP_563964.1 3549729 D 318161 CDS YP_563965.1 91794314 4019489 complement(3550705..3551436) 1 NC_007954.1 hypothetical protein 3551436 4019489 Sden_2964 Shewanella denitrificans OS217 hypothetical protein YP_563965.1 3550705 R 318161 CDS YP_563966.1 91794315 4019490 complement(3551648..3552055) 1 NC_007954.1 hypothetical protein 3552055 4019490 Sden_2965 Shewanella denitrificans OS217 hypothetical protein YP_563966.1 3551648 R 318161 CDS YP_563967.1 91794316 4019491 complement(3552075..3552788) 1 NC_007954.1 hypothetical protein 3552788 4019491 Sden_2966 Shewanella denitrificans OS217 hypothetical protein YP_563967.1 3552075 R 318161 CDS YP_563968.1 91794317 4019492 complement(3552798..3553481) 1 NC_007954.1 peptidase C39, bacteriocin processing 3553481 4019492 Sden_2967 Shewanella denitrificans OS217 peptidase C39, bacteriocin processing YP_563968.1 3552798 R 318161 CDS YP_563969.1 91794318 4019493 complement(3553535..3554602) 1 NC_007954.1 hypothetical protein 3554602 4019493 Sden_2968 Shewanella denitrificans OS217 hypothetical protein YP_563969.1 3553535 R 318161 CDS YP_563970.1 91794319 4019494 complement(3554629..3555273) 1 NC_007954.1 hypothetical protein 3555273 4019494 Sden_2969 Shewanella denitrificans OS217 hypothetical protein YP_563970.1 3554629 R 318161 CDS YP_563971.1 91794320 4019495 complement(3555499..3556836) 1 NC_007954.1 sigma-54 factor, interaction region 3556836 4019495 Sden_2970 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_563971.1 3555499 R 318161 CDS YP_563972.1 91794321 4019496 3557253..3558452 1 NC_007954.1 hypothetical protein 3558452 4019496 Sden_2971 Shewanella denitrificans OS217 hypothetical protein YP_563972.1 3557253 D 318161 CDS YP_563973.1 91794322 4019497 3558483..3559142 1 NC_007954.1 hypothetical protein 3559142 4019497 Sden_2972 Shewanella denitrificans OS217 hypothetical protein YP_563973.1 3558483 D 318161 CDS YP_563974.1 91794323 4019498 3559158..3559967 1 NC_007954.1 deoxyribonuclease I 3559967 4019498 Sden_2973 Shewanella denitrificans OS217 deoxyribonuclease I YP_563974.1 3559158 D 318161 CDS YP_563975.1 91794324 4019499 3559981..3560715 1 NC_007954.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3560715 4019499 Sden_2974 Shewanella denitrificans OS217 16S ribosomal RNA methyltransferase RsmE YP_563975.1 3559981 D 318161 CDS YP_563976.1 91794325 4019500 3560751..3561710 1 NC_007954.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3561710 4019500 Sden_2975 Shewanella denitrificans OS217 glutathione synthetase YP_563976.1 3560751 D 318161 CDS YP_563977.1 91794326 4019501 3561713..3563098 1 NC_007954.1 alkaline phosphatase 3563098 4019501 Sden_2976 Shewanella denitrificans OS217 alkaline phosphatase YP_563977.1 3561713 D 318161 CDS YP_563978.1 91794327 4019502 3563215..3564252 1 NC_007954.1 rRNA (guanine-N(2)-)-methyltransferase 3564252 4019502 Sden_2977 Shewanella denitrificans OS217 rRNA (guanine-N(2)-)-methyltransferase YP_563978.1 3563215 D 318161 CDS YP_563979.1 91794328 4019503 3564540..3566207 1 NC_007954.1 hypothetical protein 3566207 4019503 Sden_2978 Shewanella denitrificans OS217 hypothetical protein YP_563979.1 3564540 D 318161 CDS YP_563980.1 91794329 4019504 3566305..3566700 1 NC_007954.1 hypothetical protein 3566700 4019504 Sden_2979 Shewanella denitrificans OS217 hypothetical protein YP_563980.1 3566305 D 318161 CDS YP_563981.1 91794330 4019505 3566790..3567971 1 NC_007954.1 peptidase M50 3567971 4019505 Sden_2980 Shewanella denitrificans OS217 peptidase M50 YP_563981.1 3566790 D 318161 CDS YP_563982.1 91794331 4019506 3568145..3569032 1 NC_007954.1 transposase, IS4 3569032 4019506 Sden_2981 Shewanella denitrificans OS217 transposase, IS4 YP_563982.1 3568145 D 318161 CDS YP_563983.1 91794332 4019507 complement(3569045..3570394) 1 NC_007954.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 3570394 4019507 Sden_2982 Shewanella denitrificans OS217 aspartate kinase III YP_563983.1 3569045 R 318161 CDS YP_563984.1 91794333 4019508 complement(3570824..3571261) 1 NC_007954.1 hypothetical protein 3571261 4019508 Sden_2983 Shewanella denitrificans OS217 hypothetical protein YP_563984.1 3570824 R 318161 CDS YP_563985.1 91794334 4019509 3571927..3572643 1 NC_007954.1 two-component response regulator 3572643 4019509 Sden_2984 Shewanella denitrificans OS217 two-component response regulator YP_563985.1 3571927 D 318161 CDS YP_563986.1 91794335 4019510 complement(3572762..3575089) 1 NC_007954.1 peptidase S9B, dipeptidylpeptidase IV-like protein 3575089 4019510 Sden_2985 Shewanella denitrificans OS217 peptidase S9B, dipeptidylpeptidase IV-like protein YP_563986.1 3572762 R 318161 CDS YP_563987.1 91794336 4019511 3575611..3576603 1 NC_007954.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3576603 4019511 Sden_2986 Shewanella denitrificans OS217 fructose-1,6-bisphosphatase YP_563987.1 3575611 D 318161 CDS YP_563988.1 91794337 4019512 complement(3576694..3577947) 1 NC_007954.1 sodium:dicarboxylate symporter 3577947 4019512 Sden_2987 Shewanella denitrificans OS217 sodium:dicarboxylate symporter YP_563988.1 3576694 R 318161 CDS YP_563989.1 91794338 4019513 complement(3578130..3579038) 1 NC_007954.1 hypothetical protein 3579038 4019513 Sden_2988 Shewanella denitrificans OS217 hypothetical protein YP_563989.1 3578130 R 318161 CDS YP_563990.1 91794339 4019514 complement(3579026..3580246) 1 NC_007954.1 hypothetical protein 3580246 4019514 Sden_2989 Shewanella denitrificans OS217 hypothetical protein YP_563990.1 3579026 R 318161 CDS YP_563991.1 91794340 4019515 complement(3580243..3580890) 1 NC_007954.1 hypothetical protein 3580890 4019515 Sden_2990 Shewanella denitrificans OS217 hypothetical protein YP_563991.1 3580243 R 318161 CDS YP_563992.1 91794341 4019516 complement(3580890..3584579) 1 NC_007954.1 hypothetical protein 3584579 4019516 Sden_2991 Shewanella denitrificans OS217 hypothetical protein YP_563992.1 3580890 R 318161 CDS YP_563993.1 91794342 4019517 complement(3585019..3585597) 1 NC_007954.1 hypothetical protein 3585597 4019517 Sden_2992 Shewanella denitrificans OS217 hypothetical protein YP_563993.1 3585019 R 318161 CDS YP_563994.1 91794343 4019518 complement(3585779..3586231) 1 NC_007954.1 hypothetical protein 3586231 4019518 Sden_2993 Shewanella denitrificans OS217 hypothetical protein YP_563994.1 3585779 R 318161 CDS YP_563995.1 91794344 4019519 complement(3586625..3587653) 1 NC_007954.1 hypothetical protein 3587653 4019519 Sden_2994 Shewanella denitrificans OS217 hypothetical protein YP_563995.1 3586625 R 318161 CDS YP_563996.1 91794345 4019520 complement(3587802..3590555) 1 NC_007954.1 hypothetical protein 3590555 4019520 Sden_2995 Shewanella denitrificans OS217 hypothetical protein YP_563996.1 3587802 R 318161 CDS YP_563997.1 91794346 4019521 complement(3590552..3591988) 1 NC_007954.1 AAA ATPase, central region 3591988 4019521 Sden_2996 Shewanella denitrificans OS217 AAA ATPase, central region YP_563997.1 3590552 R 318161 CDS YP_563998.1 91794347 4019522 complement(3592090..3597723) 1 NC_007954.1 hypothetical protein 3597723 4019522 Sden_2997 Shewanella denitrificans OS217 hypothetical protein YP_563998.1 3592090 R 318161 CDS YP_563999.1 91794348 4019523 complement(3597713..3600433) 1 NC_007954.1 hypothetical protein 3600433 4019523 Sden_2998 Shewanella denitrificans OS217 hypothetical protein YP_563999.1 3597713 R 318161 CDS YP_564000.1 91794349 4019524 complement(3600423..3601340) 1 NC_007954.1 hypothetical protein 3601340 4019524 Sden_2999 Shewanella denitrificans OS217 hypothetical protein YP_564000.1 3600423 R 318161 CDS YP_564001.1 91794350 4019525 complement(3601333..3605574) 1 NC_007954.1 hypothetical protein 3605574 4019525 Sden_3000 Shewanella denitrificans OS217 hypothetical protein YP_564001.1 3601333 R 318161 CDS YP_564002.1 91794351 4019526 complement(3605564..3606001) 1 NC_007954.1 GPW/gp25 3606001 4019526 Sden_3001 Shewanella denitrificans OS217 GPW/gp25 YP_564002.1 3605564 R 318161 CDS YP_564003.1 91794352 4019527 complement(3606135..3606434) 1 NC_007954.1 PAAR 3606434 4019527 Sden_3002 Shewanella denitrificans OS217 PAAR YP_564003.1 3606135 R 318161 CDS YP_564004.1 91794353 4019528 complement(3606445..3608241) 1 NC_007954.1 Rhs element Vgr protein 3608241 4019528 Sden_3003 Shewanella denitrificans OS217 Rhs element Vgr protein YP_564004.1 3606445 R 318161 CDS YP_564005.1 91794354 4019529 complement(3608270..3608911) 1 NC_007954.1 hypothetical protein 3608911 4019529 Sden_3004 Shewanella denitrificans OS217 hypothetical protein YP_564005.1 3608270 R 318161 CDS YP_564006.1 91794355 4019530 complement(3609094..3609567) 1 NC_007954.1 hypothetical protein 3609567 4019530 Sden_3005 Shewanella denitrificans OS217 hypothetical protein YP_564006.1 3609094 R 318161 CDS YP_564007.1 91794356 4019531 complement(3609678..3610151) 1 NC_007954.1 hypothetical protein 3610151 4019531 Sden_3006 Shewanella denitrificans OS217 hypothetical protein YP_564007.1 3609678 R 318161 CDS YP_564008.1 91794357 4019532 complement(3610204..3611757) 1 NC_007954.1 hypothetical protein 3611757 4019532 Sden_3007 Shewanella denitrificans OS217 hypothetical protein YP_564008.1 3610204 R 318161 CDS YP_564009.1 91794358 4019533 complement(3611775..3612668) 1 NC_007954.1 hypothetical protein 3612668 4019533 Sden_3008 Shewanella denitrificans OS217 hypothetical protein YP_564009.1 3611775 R 318161 CDS YP_564010.1 91794359 4019534 complement(3612671..3613243) 1 NC_007954.1 hypothetical protein 3613243 4019534 Sden_3009 Shewanella denitrificans OS217 hypothetical protein YP_564010.1 3612671 R 318161 CDS YP_564011.1 91794360 4019535 complement(3613992..3615611) 1 NC_007954.1 chemotaxis sensory transducer 3615611 4019535 Sden_3010 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564011.1 3613992 R 318161 CDS YP_564012.1 91794361 4019536 complement(3615965..3617560) 1 NC_007954.1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3617560 4019536 Sden_3011 Shewanella denitrificans OS217 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_564012.1 3615965 R 318161 CDS YP_564013.1 91794362 4019537 complement(3617843..3618412) 1 NC_007954.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3618412 4019537 Sden_3012 Shewanella denitrificans OS217 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_564013.1 3617843 R 318161 CDS YP_564014.1 91794363 4019538 complement(3618581..3619450) 1 NC_007954.1 transcription activator, effector binding 3619450 4019538 Sden_3013 Shewanella denitrificans OS217 transcription activator, effector binding YP_564014.1 3618581 R 318161 CDS YP_564015.1 91794364 4019539 3619756..3620448 1 NC_007954.1 hypothetical protein 3620448 4019539 Sden_3014 Shewanella denitrificans OS217 hypothetical protein YP_564015.1 3619756 D 318161 CDS YP_564016.1 91794365 4019540 3620792..3623125 1 NC_007954.1 peptidase M4, thermolysin 3623125 4019540 Sden_3015 Shewanella denitrificans OS217 peptidase M4, thermolysin YP_564016.1 3620792 D 318161 CDS YP_564017.1 91794366 4019541 complement(3623279..3624349) 1 NC_007954.1 ACP S-malonyltransferase 3624349 4019541 Sden_3016 Shewanella denitrificans OS217 ACP S-malonyltransferase YP_564017.1 3623279 R 318161 CDS YP_564018.1 91794367 4019542 complement(3624346..3626631) 1 NC_007954.1 transketolase 3626631 4019542 Sden_3017 Shewanella denitrificans OS217 transketolase YP_564018.1 3624346 R 318161 CDS YP_564019.1 91794368 4019543 complement(3626858..3628033) 1 NC_007954.1 acyl-CoA dehydrogenase-like protein 3628033 4019543 Sden_3018 Shewanella denitrificans OS217 acyl-CoA dehydrogenase-like protein YP_564019.1 3626858 R 318161 CDS YP_564020.1 91794369 4019544 3628332..3629174 1 NC_007954.1 regulatory protein, LysR 3629174 4019544 Sden_3019 Shewanella denitrificans OS217 regulatory protein, LysR YP_564020.1 3628332 D 318161 CDS YP_564021.1 91794370 4019545 3629372..3629662 1 NC_007954.1 transposase IS3/IS911 3629662 4019545 Sden_3020 Shewanella denitrificans OS217 transposase IS3/IS911 YP_564021.1 3629372 D 318161 CDS YP_564022.1 91794371 4019546 3629722..3630531 1 NC_007954.1 integrase catalytic subunit 3630531 4019546 Sden_3021 Shewanella denitrificans OS217 integrase catalytic subunit YP_564022.1 3629722 D 318161 CDS YP_564023.1 91794372 4019547 complement(3630890..3631288) 1 NC_007954.1 glutathione-dependent formaldehyde-activating, GFA 3631288 4019547 Sden_3022 Shewanella denitrificans OS217 glutathione-dependent formaldehyde-activating, GFA YP_564023.1 3630890 R 318161 CDS YP_564024.1 91794373 4019548 complement(3631466..3631807) 1 NC_007954.1 cupin 2, barrel 3631807 4019548 Sden_3023 Shewanella denitrificans OS217 cupin 2, barrel YP_564024.1 3631466 R 318161 CDS YP_564025.1 91794374 4019549 complement(3631817..3632335) 1 NC_007954.1 GCN5-related N-acetyltransferase 3632335 4019549 Sden_3024 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_564025.1 3631817 R 318161 CDS YP_564026.1 91794375 4019550 complement(3632411..3633490) 1 NC_007954.1 hypothetical protein 3633490 4019550 Sden_3025 Shewanella denitrificans OS217 hypothetical protein YP_564026.1 3632411 R 318161 CDS YP_564027.1 91794376 4019551 3633814..3635304 1 NC_007954.1 DEAD/DEAH box helicase-like protein 3635304 4019551 Sden_3026 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_564027.1 3633814 D 318161 CDS YP_564028.1 91794377 4019552 complement(3636127..3636525) 1 NC_007954.1 hypothetical protein 3636525 4019552 Sden_3027 Shewanella denitrificans OS217 hypothetical protein YP_564028.1 3636127 R 318161 CDS YP_564029.1 91794378 4019553 complement(3637273..3638082) 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 3638082 4019553 Sden_3028 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_564029.1 3637273 R 318161 CDS YP_564030.1 91794379 4019554 complement(3638079..3638936) 1 NC_007954.1 binding-protein-dependent transport systems inner membrane component 3638936 4019554 Sden_3029 Shewanella denitrificans OS217 binding-protein-dependent transport systems inner membrane component YP_564030.1 3638079 R 318161 CDS YP_564031.1 91794380 4019555 complement(3638981..3640153) 1 NC_007954.1 spermidine/putrescine ABC transporter ATP-binding subunit 3640153 4019555 Sden_3030 Shewanella denitrificans OS217 spermidine/putrescine ABC transporter ATP-binding subunit YP_564031.1 3638981 R 318161 CDS YP_564032.1 91794381 4019556 complement(3640285..3641385) 1 NC_007954.1 extracellular solute-binding protein 3641385 4019556 Sden_3031 Shewanella denitrificans OS217 extracellular solute-binding protein YP_564032.1 3640285 R 318161 CDS YP_564033.1 91794382 4019557 complement(3641703..3643058) 1 NC_007954.1 glutamate--ammonia ligase 3643058 4019557 Sden_3032 Shewanella denitrificans OS217 glutamate--ammonia ligase YP_564033.1 3641703 R 318161 CDS YP_564034.1 91794383 4019558 complement(3643061..3643825) 1 NC_007954.1 peptidase C26 3643825 4019558 Sden_3033 Shewanella denitrificans OS217 peptidase C26 YP_564034.1 3643061 R 318161 CDS YP_564035.1 91794384 4019559 complement(3644010..3645509) 1 NC_007954.1 aldehyde dehydrogenase 3645509 4019559 Sden_3034 Shewanella denitrificans OS217 aldehyde dehydrogenase YP_564035.1 3644010 R 318161 CDS YP_564036.1 91794385 4019560 3646034..3646378 1 NC_007954.1 hypothetical protein 3646378 4019560 Sden_3035 Shewanella denitrificans OS217 hypothetical protein YP_564036.1 3646034 D 318161 CDS YP_564037.1 91794386 4019561 complement(3646428..3647651) 1 NC_007954.1 amidohydrolase 3647651 4019561 Sden_3036 Shewanella denitrificans OS217 amidohydrolase YP_564037.1 3646428 R 318161 CDS YP_564038.1 91794387 4019562 3647983..3648945 1 NC_007954.1 GGDEF domain-containing protein 3648945 4019562 Sden_3037 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564038.1 3647983 D 318161 CDS YP_564039.1 91794388 4019564 3649459..3649743 1 NC_007954.1 heat shock protein DnaJ-like protein 3649743 4019564 Sden_3038 Shewanella denitrificans OS217 heat shock protein DnaJ-like protein YP_564039.1 3649459 D 318161 CDS YP_564040.1 91794389 4019565 3649751..3650287 1 NC_007954.1 hypothetical protein 3650287 4019565 Sden_3039 Shewanella denitrificans OS217 hypothetical protein YP_564040.1 3649751 D 318161 CDS YP_564041.1 91794390 4019566 3650287..3651045 1 NC_007954.1 hypothetical protein 3651045 4019566 Sden_3040 Shewanella denitrificans OS217 hypothetical protein YP_564041.1 3650287 D 318161 CDS YP_564042.1 91794391 4019567 3651056..3651946 1 NC_007954.1 hypothetical protein 3651946 4019567 Sden_3041 Shewanella denitrificans OS217 hypothetical protein YP_564042.1 3651056 D 318161 CDS YP_564043.1 91794392 4019568 complement(3652186..3652929) 1 NC_007954.1 spermidine synthase 3652929 4019568 Sden_3042 Shewanella denitrificans OS217 spermidine synthase YP_564043.1 3652186 R 318161 CDS YP_564044.1 91794393 4019569 3653069..3653605 1 NC_007954.1 hypothetical protein 3653605 4019569 Sden_3043 Shewanella denitrificans OS217 hypothetical protein YP_564044.1 3653069 D 318161 CDS YP_564045.1 91794394 4019570 complement(3653719..3654186) 1 NC_007954.1 hypothetical protein 3654186 4019570 Sden_3044 Shewanella denitrificans OS217 hypothetical protein YP_564045.1 3653719 R 318161 CDS YP_564046.1 91794395 4019571 complement(3654208..3656319) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 3656319 4019571 Sden_3045 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_564046.1 3654208 R 318161 CDS YP_564047.1 91794396 4019572 complement(3656813..3657550) 1 NC_007954.1 dienelactone hydrolase 3657550 4019572 Sden_3046 Shewanella denitrificans OS217 dienelactone hydrolase YP_564047.1 3656813 R 318161 CDS YP_564048.1 91794397 4019573 complement(3657645..3658637) 1 NC_007954.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 3658637 4019573 Sden_3047 Shewanella denitrificans OS217 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_564048.1 3657645 R 318161 CDS YP_564049.1 91794398 4019574 3659143..3659820 1 NC_007954.1 pseudouridylate synthase 3659820 4019574 Sden_3048 Shewanella denitrificans OS217 pseudouridylate synthase YP_564049.1 3659143 D 318161 CDS YP_564050.1 91794399 4019575 3660056..3660517 1 NC_007954.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3660517 4019575 Sden_3049 Shewanella denitrificans OS217 DNA-binding transcriptional regulator AsnC YP_564050.1 3660056 D 318161 CDS YP_564051.1 91794400 4019576 3661140..3664802 1 NC_007954.1 protease-associated PA 3664802 4019576 Sden_3050 Shewanella denitrificans OS217 protease-associated PA YP_564051.1 3661140 D 318161 CDS YP_564052.1 91794401 4019577 complement(3664905..3665597) 1 NC_007954.1 hypothetical protein 3665597 4019577 Sden_3051 Shewanella denitrificans OS217 hypothetical protein YP_564052.1 3664905 R 318161 CDS YP_564053.1 91794402 4019578 complement(3665747..3667294) 1 NC_007954.1 carotenoid oxygenase 3667294 4019578 Sden_3052 Shewanella denitrificans OS217 carotenoid oxygenase YP_564053.1 3665747 R 318161 CDS YP_564054.1 91794403 4019579 complement(3667319..3667774) 1 NC_007954.1 hypothetical protein 3667774 4019579 Sden_3053 Shewanella denitrificans OS217 hypothetical protein YP_564054.1 3667319 R 318161 CDS YP_564055.1 91794404 4019580 3667955..3669103 1 NC_007954.1 histidine kinase, dimerisation and phosphoacceptor region 3669103 4019580 Sden_3054 Shewanella denitrificans OS217 histidine kinase, dimerisation and phosphoacceptor region YP_564055.1 3667955 D 318161 CDS YP_564056.1 91794405 4019581 3669176..3669835 1 NC_007954.1 response regulator receiver 3669835 4019581 Sden_3055 Shewanella denitrificans OS217 response regulator receiver YP_564056.1 3669176 D 318161 CDS YP_564057.1 91794406 4019582 complement(3669828..3670643) 1 NC_007954.1 hydratase/decarboxylase family protein 3670643 4019582 Sden_3056 Shewanella denitrificans OS217 hydratase/decarboxylase family protein YP_564057.1 3669828 R 318161 CDS YP_564058.1 91794407 4019583 complement(3670681..3671259) 1 NC_007954.1 hypothetical protein 3671259 4019583 Sden_3057 Shewanella denitrificans OS217 hypothetical protein YP_564058.1 3670681 R 318161 CDS YP_564059.1 91794408 4019584 complement(3671343..3672041) 1 NC_007954.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 3672041 fre 4019584 fre Shewanella denitrificans OS217 FMN reductase YP_564059.1 3671343 R 318161 CDS YP_564060.1 91794409 4019585 complement(3672117..3673598) 1 NC_007954.1 carboxylyase-like protein 3673598 4019585 Sden_3059 Shewanella denitrificans OS217 carboxylyase-like protein YP_564060.1 3672117 R 318161 CDS YP_564061.1 91794410 4019586 3673737..3674525 1 NC_007954.1 hypothetical protein 3674525 4019586 Sden_3060 Shewanella denitrificans OS217 hypothetical protein YP_564061.1 3673737 D 318161 CDS YP_564062.1 91794411 4019587 complement(3674528..3675937) 1 NC_007954.1 GGDEF domain-containing protein 3675937 4019587 Sden_3061 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564062.1 3674528 R 318161 CDS YP_564063.1 91794412 4019588 complement(3675942..3676934) 1 NC_007954.1 hypothetical protein 3676934 4019588 Sden_3062 Shewanella denitrificans OS217 hypothetical protein YP_564063.1 3675942 R 318161 CDS YP_564064.1 91794413 4019589 3677554..3678657 1 NC_007954.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3678657 4019589 Sden_3063 Shewanella denitrificans OS217 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_564064.1 3677554 D 318161 CDS YP_564065.1 91794414 4019590 3678896..3681034 1 NC_007954.1 TonB-dependent siderophore receptor 3681034 4019590 Sden_3064 Shewanella denitrificans OS217 TonB-dependent siderophore receptor YP_564065.1 3678896 D 318161 CDS YP_564066.1 91794415 4019591 3681133..3682233 1 NC_007954.1 PepSY-associated TM helix 3682233 4019591 Sden_3065 Shewanella denitrificans OS217 PepSY-associated TM helix YP_564066.1 3681133 D 318161 CDS YP_564067.1 91794416 4019592 3682626..3684092 1 NC_007954.1 chemotaxis sensory transducer 3684092 4019592 Sden_3066 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564067.1 3682626 D 318161 CDS YP_564068.1 91794417 4019593 complement(3684281..3685624) 1 NC_007954.1 peptidase U62, modulator of DNA gyrase 3685624 4019593 Sden_3067 Shewanella denitrificans OS217 peptidase U62, modulator of DNA gyrase YP_564068.1 3684281 R 318161 CDS YP_564069.1 91794418 4019594 3685829..3686362 1 NC_007954.1 hypothetical protein 3686362 4019594 Sden_3068 Shewanella denitrificans OS217 hypothetical protein YP_564069.1 3685829 D 318161 CDS YP_564070.1 91794419 4019595 3686388..3688880 1 NC_007954.1 hypothetical protein 3688880 4019595 Sden_3069 Shewanella denitrificans OS217 hypothetical protein YP_564070.1 3686388 D 318161 CDS YP_564071.1 91794420 4019596 complement(3688977..3689924) 1 NC_007954.1 band 7 protein 3689924 4019596 Sden_3070 Shewanella denitrificans OS217 band 7 protein YP_564071.1 3688977 R 318161 CDS YP_564072.1 91794421 4019597 complement(3689927..3690871) 1 NC_007954.1 band 7 protein 3690871 4019597 Sden_3071 Shewanella denitrificans OS217 band 7 protein YP_564072.1 3689927 R 318161 CDS YP_564073.1 91794422 4019598 complement(3690884..3691363) 1 NC_007954.1 hypothetical protein 3691363 4019598 Sden_3072 Shewanella denitrificans OS217 hypothetical protein YP_564073.1 3690884 R 318161 CDS YP_564074.1 91794423 4019599 3691625..3692380 1 NC_007954.1 hypothetical protein 3692380 4019599 Sden_3073 Shewanella denitrificans OS217 hypothetical protein YP_564074.1 3691625 D 318161 CDS YP_564075.1 91794424 4019600 complement(3692470..3693228) 1 NC_007954.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 3693228 4019600 Sden_3074 Shewanella denitrificans OS217 uridine phosphorylase YP_564075.1 3692470 R 318161 CDS YP_564076.1 91794425 4019601 complement(3693619..3694794) 1 NC_007954.1 diaminopimelate decarboxylase 3694794 4019601 Sden_3075 Shewanella denitrificans OS217 diaminopimelate decarboxylase YP_564076.1 3693619 R 318161 CDS YP_564077.1 91794426 4019602 complement(3695020..3695898) 1 NC_007954.1 radical SAM family protein 3695898 4019602 Sden_3076 Shewanella denitrificans OS217 radical SAM family protein YP_564077.1 3695020 R 318161 CDS YP_564078.1 91794427 4019603 complement(3695895..3696359) 1 NC_007954.1 GCN5-related N-acetyltransferase 3696359 4019603 Sden_3077 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_564078.1 3695895 R 318161 CDS YP_564079.1 91794428 4019604 complement(3696440..3697051) 1 NC_007954.1 regulatory protein, TetR 3697051 4019604 Sden_3078 Shewanella denitrificans OS217 regulatory protein, TetR YP_564079.1 3696440 R 318161 CDS YP_564080.1 91794429 4019605 3697276..3698532 1 NC_007954.1 secretion protein HlyD 3698532 4019605 Sden_3079 Shewanella denitrificans OS217 secretion protein HlyD YP_564080.1 3697276 D 318161 CDS YP_564081.1 91794430 4019606 3698545..3701781 1 NC_007954.1 hydrophobe/amphiphile efflux-1 HAE1 3701781 4019606 Sden_3080 Shewanella denitrificans OS217 hydrophobe/amphiphile efflux-1 HAE1 YP_564081.1 3698545 D 318161 CDS YP_564082.1 91794431 4019607 3701774..3703264 1 NC_007954.1 RND efflux system, outer membrane lipoprotein, NodT 3703264 4019607 Sden_3081 Shewanella denitrificans OS217 RND efflux system, outer membrane lipoprotein, NodT YP_564082.1 3701774 D 318161 CDS YP_564083.1 91794432 4019608 complement(3703659..3704510) 1 NC_007954.1 hypothetical protein 3704510 4019608 Sden_3082 Shewanella denitrificans OS217 hypothetical protein YP_564083.1 3703659 R 318161 CDS YP_564084.1 91794433 4019609 complement(3704625..3705332) 1 NC_007954.1 hypothetical protein 3705332 4019609 Sden_3083 Shewanella denitrificans OS217 hypothetical protein YP_564084.1 3704625 R 318161 CDS YP_564085.1 91794434 4019610 complement(3706018..3706995) 1 NC_007954.1 hypothetical protein 3706995 4019610 Sden_3084 Shewanella denitrificans OS217 hypothetical protein YP_564085.1 3706018 R 318161 CDS YP_564086.1 91794435 4019611 complement(3707595..3708065) 1 NC_007954.1 hypothetical protein 3708065 4019611 Sden_3085 Shewanella denitrificans OS217 hypothetical protein YP_564086.1 3707595 R 318161 CDS YP_564087.1 91794436 4019612 complement(3708227..3708724) 1 NC_007954.1 GCN5-related N-acetyltransferase 3708724 4019612 Sden_3086 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_564087.1 3708227 R 318161 CDS YP_564088.1 91794437 4019613 complement(3709051..3710028) 1 NC_007954.1 hypothetical protein 3710028 4019613 Sden_3087 Shewanella denitrificans OS217 hypothetical protein YP_564088.1 3709051 R 318161 CDS YP_564089.1 91794438 4019614 complement(3710110..3711345) 1 NC_007954.1 acetyl-CoA hydrolase 3711345 4019614 Sden_3088 Shewanella denitrificans OS217 acetyl-CoA hydrolase YP_564089.1 3710110 R 318161 CDS YP_564090.1 91794439 4019616 complement(3711786..3713204) 1 NC_007954.1 hypothetical protein 3713204 4019616 Sden_3090 Shewanella denitrificans OS217 hypothetical protein YP_564090.1 3711786 R 318161 CDS YP_564091.1 91794440 4019617 complement(3713419..3713676) 1 NC_007954.1 hypothetical protein 3713676 4019617 Sden_3091 Shewanella denitrificans OS217 hypothetical protein YP_564091.1 3713419 R 318161 CDS YP_564092.1 91794441 4019618 complement(3713796..3714272) 1 NC_007954.1 phenylacetic acid degradation-related protein 3714272 4019618 Sden_3092 Shewanella denitrificans OS217 phenylacetic acid degradation-related protein YP_564092.1 3713796 R 318161 CDS YP_564093.1 91794442 4019619 complement(3714385..3716892) 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 3716892 4019619 Sden_3093 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_564093.1 3714385 R 318161 CDS YP_564094.1 91794443 4019620 3717304..3717732 1 NC_007954.1 curlin associated 3717732 4019620 Sden_3094 Shewanella denitrificans OS217 curlin associated YP_564094.1 3717304 D 318161 CDS YP_564095.1 91794444 4019621 3717756..3719252 1 NC_007954.1 curlin associated 3719252 4019621 Sden_3095 Shewanella denitrificans OS217 curlin associated YP_564095.1 3717756 D 318161 CDS YP_564096.1 91794445 4019622 complement(3719358..3720026) 1 NC_007954.1 regulatory protein, LuxR 3720026 4019622 Sden_3096 Shewanella denitrificans OS217 regulatory protein, LuxR YP_564096.1 3719358 R 318161 CDS YP_564097.1 91794446 4019623 3720563..3721792 1 NC_007954.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3721792 4019623 Sden_3097 Shewanella denitrificans OS217 D-3-phosphoglycerate dehydrogenase YP_564097.1 3720563 D 318161 CDS YP_564098.1 91794447 4019624 complement(3721894..3724926) 1 NC_007954.1 hypothetical protein 3724926 4019624 Sden_3098 Shewanella denitrificans OS217 hypothetical protein YP_564098.1 3721894 R 318161 CDS YP_564099.1 91794448 4019625 3725227..3726540 1 NC_007954.1 hypothetical protein 3726540 4019625 Sden_3099 Shewanella denitrificans OS217 hypothetical protein YP_564099.1 3725227 D 318161 CDS YP_564100.1 91794449 4019626 3726560..3728518 1 NC_007954.1 chemotaxis sensory transducer 3728518 4019626 Sden_3100 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564100.1 3726560 D 318161 CDS YP_564101.1 91794450 4019627 complement(3728633..3729769) 1 NC_007954.1 patatin 3729769 4019627 Sden_3101 Shewanella denitrificans OS217 patatin YP_564101.1 3728633 R 318161 CDS YP_564102.1 91794451 4019628 complement(3729915..3731657) 1 NC_007954.1 GGDEF domain-containing protein 3731657 4019628 Sden_3102 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564102.1 3729915 R 318161 CDS YP_564103.1 91794452 4019629 3732027..3734459 1 NC_007954.1 peptidase S16, lon-like protein 3734459 4019629 Sden_3103 Shewanella denitrificans OS217 peptidase S16, lon-like protein YP_564103.1 3732027 D 318161 CDS YP_564104.1 91794453 4019630 complement(3734575..3735765) 1 NC_007954.1 methyltransferase type 12 3735765 4019630 Sden_3104 Shewanella denitrificans OS217 methyltransferase type 12 YP_564104.1 3734575 R 318161 CDS YP_564105.1 91794454 4019631 complement(3735838..3737013) 1 NC_007954.1 methyltransferase type 12 3737013 4019631 Sden_3105 Shewanella denitrificans OS217 methyltransferase type 12 YP_564105.1 3735838 R 318161 CDS YP_564106.1 91794455 4019632 complement(3737022..3737750) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 3737750 4019632 Sden_3106 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_564106.1 3737022 R 318161 CDS YP_564107.1 91794456 4019633 complement(3737750..3738889) 1 NC_007954.1 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein 3738889 4019633 Sden_3107 Shewanella denitrificans OS217 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein YP_564107.1 3737750 R 318161 CDS YP_564108.1 91794457 4019634 complement(3738889..3739134) 1 NC_007954.1 hypothetical protein 3739134 4019634 Sden_3108 Shewanella denitrificans OS217 hypothetical protein YP_564108.1 3738889 R 318161 CDS YP_564109.1 91794458 4019635 complement(3739127..3739696) 1 NC_007954.1 acetyltransferase 3739696 4019635 Sden_3109 Shewanella denitrificans OS217 acetyltransferase YP_564109.1 3739127 R 318161 CDS YP_564110.1 91794459 4019636 complement(3739707..3740480) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 3740480 4019636 Sden_3110 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_564110.1 3739707 R 318161 CDS YP_564111.1 91794460 4019637 complement(3740480..3740713) 1 NC_007954.1 hypothetical protein 3740713 4019637 Sden_3111 Shewanella denitrificans OS217 hypothetical protein YP_564111.1 3740480 R 318161 CDS YP_564112.1 91794461 4019638 complement(3740829..3741569) 1 NC_007954.1 acylneuraminate cytidylyltransferase 3741569 4019638 Sden_3112 Shewanella denitrificans OS217 acylneuraminate cytidylyltransferase YP_564112.1 3740829 R 318161 CDS YP_564113.1 91794462 4019639 complement(3741566..3742645) 1 NC_007954.1 N-acetylneuraminic acid synthase-like protein 3742645 4019639 Sden_3113 Shewanella denitrificans OS217 N-acetylneuraminic acid synthase-like protein YP_564113.1 3741566 R 318161 CDS YP_564114.1 91794463 4019640 complement(3742648..3743751) 1 NC_007954.1 Rieske (2Fe-2S) region 3743751 4019640 Sden_3114 Shewanella denitrificans OS217 Rieske (2Fe-2S) region YP_564114.1 3742648 R 318161 CDS YP_564115.1 91794464 4019641 complement(3743748..3744449) 1 NC_007954.1 spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein 3744449 4019641 Sden_3115 Shewanella denitrificans OS217 spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein YP_564115.1 3743748 R 318161 CDS YP_564116.1 91794465 4019642 complement(3744520..3745407) 1 NC_007954.1 transposase, IS4 3745407 4019642 Sden_3116 Shewanella denitrificans OS217 transposase, IS4 YP_564116.1 3744520 R 318161 CDS YP_564117.1 91794466 4019643 complement(3745466..3745801) 1 NC_007954.1 hypothetical protein 3745801 4019643 Sden_3117 Shewanella denitrificans OS217 hypothetical protein YP_564117.1 3745466 R 318161 CDS YP_564118.1 91794467 4019644 complement(3745791..3746543) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 3746543 4019644 Sden_3118 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_564118.1 3745791 R 318161 CDS YP_564119.1 91794468 4019645 complement(3746552..3747640) 1 NC_007954.1 3-oxoacyl-ACP synthase 3747640 4019645 Sden_3119 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_564119.1 3746552 R 318161 CDS YP_564120.1 91794469 4019646 3747776..3748825 1 NC_007954.1 3-oxoacyl-ACP synthase 3748825 4019646 Sden_3120 Shewanella denitrificans OS217 3-oxoacyl-ACP synthase YP_564120.1 3747776 D 318161 CDS YP_564121.1 91794470 4019647 complement(3748918..3749499) 1 NC_007954.1 GCN5-related N-acetyltransferase 3749499 4019647 Sden_3121 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_564121.1 3748918 R 318161 CDS YP_564122.1 91794471 4019648 complement(3749645..3751165) 1 NC_007954.1 hypothetical protein 3751165 4019648 Sden_3122 Shewanella denitrificans OS217 hypothetical protein YP_564122.1 3749645 R 318161 CDS YP_564123.1 91794472 4019649 3751491..3752630 1 NC_007954.1 hypothetical protein 3752630 4019649 Sden_3123 Shewanella denitrificans OS217 hypothetical protein YP_564123.1 3751491 D 318161 CDS YP_564124.1 91794473 4019650 complement(3752955..3755330) 1 NC_007954.1 TonB-dependent receptor 3755330 4019650 Sden_3124 Shewanella denitrificans OS217 TonB-dependent receptor YP_564124.1 3752955 R 318161 CDS YP_564125.1 91794474 4019651 3755469..3755936 1 NC_007954.1 hypothetical protein 3755936 4019651 Sden_3125 Shewanella denitrificans OS217 hypothetical protein YP_564125.1 3755469 D 318161 CDS YP_564126.1 91794475 4019652 3755937..3756497 1 NC_007954.1 hypothetical protein 3756497 4019652 Sden_3126 Shewanella denitrificans OS217 hypothetical protein YP_564126.1 3755937 D 318161 CDS YP_564127.1 91794476 4019653 complement(3756582..3758084) 1 NC_007954.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3758084 lysS 4019653 lysS Shewanella denitrificans OS217 lysyl-tRNA synthetase YP_564127.1 3756582 R 318161 CDS YP_564128.1 91794477 4019654 complement(3758144..3759202) 1 NC_007954.1 peptide chain release factor 2 3759202 4019654 Sden_3128 Shewanella denitrificans OS217 peptide chain release factor 2 YP_564128.1 3758144 R 318161 CDS YP_564129.1 91794478 4019655 3759583..3761289 1 NC_007954.1 amidohydrolase 3 3761289 4019655 Sden_3129 Shewanella denitrificans OS217 amidohydrolase 3 YP_564129.1 3759583 D 318161 CDS YP_564130.1 91794479 4019656 complement(3761839..3762096) 1 NC_007954.1 hypothetical protein 3762096 4019656 Sden_3130 Shewanella denitrificans OS217 hypothetical protein YP_564130.1 3761839 R 318161 CDS YP_564131.1 91794480 4019658 complement(3762630..3763541) 1 NC_007954.1 hypothetical protein 3763541 4019658 Sden_3132 Shewanella denitrificans OS217 hypothetical protein YP_564131.1 3762630 R 318161 CDS YP_564132.1 91794481 4019659 complement(3763554..3764294) 1 NC_007954.1 hypothetical protein 3764294 4019659 Sden_3133 Shewanella denitrificans OS217 hypothetical protein YP_564132.1 3763554 R 318161 CDS YP_564133.1 91794482 4019660 complement(3764336..3765319) 1 NC_007954.1 hypothetical protein 3765319 4019660 Sden_3134 Shewanella denitrificans OS217 hypothetical protein YP_564133.1 3764336 R 318161 CDS YP_564134.1 91794483 4019661 complement(3765599..3766225) 1 NC_007954.1 hypothetical protein 3766225 4019661 Sden_3135 Shewanella denitrificans OS217 hypothetical protein YP_564134.1 3765599 R 318161 CDS YP_564135.1 91794484 4019662 complement(3766529..3767965) 1 NC_007954.1 AAA ATPase, central region 3767965 4019662 Sden_3136 Shewanella denitrificans OS217 AAA ATPase, central region YP_564135.1 3766529 R 318161 CDS YP_564136.1 91794485 4019663 3768194..3769045 1 NC_007954.1 peptidoglycan-binding LysM 3769045 4019663 Sden_3137 Shewanella denitrificans OS217 peptidoglycan-binding LysM YP_564136.1 3768194 D 318161 CDS YP_564137.1 91794486 4019664 complement(3769118..3769573) 1 NC_007954.1 hypothetical protein 3769573 4019664 Sden_3138 Shewanella denitrificans OS217 hypothetical protein YP_564137.1 3769118 R 318161 CDS YP_564138.1 91794487 4019665 complement(3769800..3770498) 1 NC_007954.1 hypothetical protein 3770498 4019665 Sden_3139 Shewanella denitrificans OS217 hypothetical protein YP_564138.1 3769800 R 318161 CDS YP_564139.1 91794488 4019666 complement(3770710..3771564) 1 NC_007954.1 chitinase 3771564 4019666 Sden_3140 Shewanella denitrificans OS217 chitinase YP_564139.1 3770710 R 318161 CDS YP_564140.1 91794489 4019667 complement(3771675..3772301) 1 NC_007954.1 hypothetical protein 3772301 4019667 Sden_3141 Shewanella denitrificans OS217 hypothetical protein YP_564140.1 3771675 R 318161 CDS YP_564141.1 91794490 4019668 complement(3772371..3772856) 1 NC_007954.1 hypothetical protein 3772856 4019668 Sden_3142 Shewanella denitrificans OS217 hypothetical protein YP_564141.1 3772371 R 318161 CDS YP_564142.1 91794491 4019669 complement(3773537..3775096) 1 NC_007954.1 hypothetical protein 3775096 4019669 Sden_3143 Shewanella denitrificans OS217 hypothetical protein YP_564142.1 3773537 R 318161 CDS YP_564143.1 91794492 4019670 complement(3775099..3775830) 1 NC_007954.1 hypothetical protein 3775830 4019670 Sden_3144 Shewanella denitrificans OS217 hypothetical protein YP_564143.1 3775099 R 318161 CDS YP_564144.1 91794493 4019671 complement(3775858..3776862) 1 NC_007954.1 hypothetical protein 3776862 4019671 Sden_3145 Shewanella denitrificans OS217 hypothetical protein YP_564144.1 3775858 R 318161 CDS YP_564145.1 91794494 4019672 complement(3776906..3777262) 1 NC_007954.1 hypothetical protein 3777262 4019672 Sden_3146 Shewanella denitrificans OS217 hypothetical protein YP_564145.1 3776906 R 318161 CDS YP_564146.1 91794495 4019673 complement(3777341..3777826) 1 NC_007954.1 hypothetical protein 3777826 4019673 Sden_3147 Shewanella denitrificans OS217 hypothetical protein YP_564146.1 3777341 R 318161 CDS YP_564147.1 91794496 4019674 complement(3778161..3778427) 1 NC_007954.1 RebB protein 3778427 4019674 Sden_3148 Shewanella denitrificans OS217 RebB protein YP_564147.1 3778161 R 318161 CDS YP_564148.1 91794497 4019675 complement(3778530..3778796) 1 NC_007954.1 RebB protein 3778796 4019675 Sden_3149 Shewanella denitrificans OS217 RebB protein YP_564148.1 3778530 R 318161 CDS YP_564149.1 91794498 4019676 complement(3778821..3779099) 1 NC_007954.1 RebB protein 3779099 4019676 Sden_3150 Shewanella denitrificans OS217 RebB protein YP_564149.1 3778821 R 318161 CDS YP_564150.1 91794499 4019677 complement(3779154..3779450) 1 NC_007954.1 RebB protein 3779450 4019677 Sden_3151 Shewanella denitrificans OS217 RebB protein YP_564150.1 3779154 R 318161 CDS YP_564151.1 91794500 4019678 complement(3779643..3780965) 1 NC_007954.1 sigma-54 factor, interaction region 3780965 4019678 Sden_3152 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_564151.1 3779643 R 318161 CDS YP_564152.1 91794501 4019679 complement(3781109..3782368) 1 NC_007954.1 hypothetical protein 3782368 4019679 Sden_3153 Shewanella denitrificans OS217 hypothetical protein YP_564152.1 3781109 R 318161 CDS YP_564153.1 91794502 4019680 complement(3782703..3783416) 1 NC_007954.1 Beta-lactamase 3783416 4019680 Sden_3154 Shewanella denitrificans OS217 Beta-lactamase YP_564153.1 3782703 R 318161 CDS YP_564154.1 91794503 4019681 complement(3783615..3784850) 1 NC_007954.1 SAM-dependent methyltransferase 3784850 4019681 Sden_3155 Shewanella denitrificans OS217 SAM-dependent methyltransferase YP_564154.1 3783615 R 318161 CDS YP_564155.1 91794504 4019682 3785204..3786937 1 NC_007954.1 FAD linked oxidase-like protein 3786937 4019682 Sden_3156 Shewanella denitrificans OS217 FAD linked oxidase-like protein YP_564155.1 3785204 D 318161 CDS YP_564156.1 91794505 4019683 complement(3787019..3787963) 1 NC_007954.1 hypothetical protein 3787963 4019683 Sden_3157 Shewanella denitrificans OS217 hypothetical protein YP_564156.1 3787019 R 318161 CDS YP_564157.1 91794506 4019684 complement(3787963..3788649) 1 NC_007954.1 hypothetical protein 3788649 4019684 Sden_3158 Shewanella denitrificans OS217 hypothetical protein YP_564157.1 3787963 R 318161 CDS YP_564158.1 91794507 4019685 complement(3788978..3789862) 1 NC_007954.1 regulatory protein, LysR 3789862 4019685 Sden_3159 Shewanella denitrificans OS217 regulatory protein, LysR YP_564158.1 3788978 R 318161 CDS YP_564159.1 91794508 4019686 complement(3789946..3791097) 1 NC_007954.1 chromate transporter 3791097 4019686 Sden_3160 Shewanella denitrificans OS217 chromate transporter YP_564159.1 3789946 R 318161 CDS YP_564160.1 91794509 4019687 complement(3791228..3791704) 1 NC_007954.1 regulatory protein, MarR 3791704 4019687 Sden_3161 Shewanella denitrificans OS217 regulatory protein, MarR YP_564160.1 3791228 R 318161 CDS YP_564161.1 91794510 4019688 3791907..3792086 1 NC_007954.1 hypothetical protein 3792086 4019688 Sden_3162 Shewanella denitrificans OS217 hypothetical protein YP_564161.1 3791907 D 318161 CDS YP_564162.1 91794511 4019689 complement(3792247..3793005) 1 NC_007954.1 hypothetical protein 3793005 4019689 Sden_3163 Shewanella denitrificans OS217 hypothetical protein YP_564162.1 3792247 R 318161 CDS YP_564163.1 91794512 4019690 complement(3793109..3795415) 1 NC_007954.1 penicillin-binding protein 1B 3795415 4019690 Sden_3164 Shewanella denitrificans OS217 penicillin-binding protein 1B YP_564163.1 3793109 R 318161 CDS YP_564164.1 91794513 4019691 complement(3795429..3797981) 1 NC_007954.1 ATP-dependent helicase HrpB 3797981 4019691 Sden_3165 Shewanella denitrificans OS217 ATP-dependent helicase HrpB YP_564164.1 3795429 R 318161 CDS YP_564165.1 91794514 4019692 complement(3798080..3800347) 1 NC_007954.1 GGDEF domain-containing protein 3800347 4019692 Sden_3166 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564165.1 3798080 R 318161 CDS YP_564166.1 91794515 4019693 3800702..3801340 1 NC_007954.1 2',5' RNA ligase 3801340 4019693 Sden_3167 Shewanella denitrificans OS217 2',5' RNA ligase YP_564166.1 3800702 D 318161 CDS YP_564167.1 91794516 4019694 complement(3801436..3802713) 1 NC_007954.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 3802713 4019694 Sden_3168 Shewanella denitrificans OS217 aminopeptidase B YP_564167.1 3801436 R 318161 CDS YP_564168.1 91794517 4019695 3802858..3803574 1 NC_007954.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3803574 4019695 Sden_3169 Shewanella denitrificans OS217 sugar fermentation stimulation protein A YP_564168.1 3802858 D 318161 CDS YP_564169.1 91794518 4019696 3803692..3804135 1 NC_007954.1 RNA polymerase-binding, DksA 3804135 4019696 Sden_3170 Shewanella denitrificans OS217 RNA polymerase-binding, DksA YP_564169.1 3803692 D 318161 CDS YP_564170.1 91794519 4019697 3804230..3805093 1 NC_007954.1 glutamate--tRNA ligase 3805093 4019697 Sden_3171 Shewanella denitrificans OS217 glutamate--tRNA ligase YP_564170.1 3804230 D 318161 CDS YP_564171.1 91794520 4019698 3805298..3806647 1 NC_007954.1 poly(A) polymerase 3806647 4019698 Sden_3172 Shewanella denitrificans OS217 poly(A) polymerase YP_564171.1 3805298 D 318161 CDS YP_564172.1 91794521 4019699 3806650..3807132 1 NC_007954.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3807132 4019699 Sden_3173 Shewanella denitrificans OS217 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_564172.1 3806650 D 318161 CDS YP_564173.1 91794522 4019700 3807204..3807998 1 NC_007954.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3807998 panB 4019700 panB Shewanella denitrificans OS217 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_564173.1 3807204 D 318161 CDS YP_564174.1 91794523 4019701 3808067..3808912 1 NC_007954.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3808912 panC 4019701 panC Shewanella denitrificans OS217 pantoate--beta-alanine ligase YP_564174.1 3808067 D 318161 CDS YP_564175.1 91794524 4019702 3809160..3809675 1 NC_007954.1 hypothetical protein 3809675 4019702 Sden_3176 Shewanella denitrificans OS217 hypothetical protein YP_564175.1 3809160 D 318161 CDS YP_564176.1 91794525 4019703 complement(3809694..3809891) 1 NC_007954.1 hypothetical protein 3809891 4019703 Sden_3177 Shewanella denitrificans OS217 hypothetical protein YP_564176.1 3809694 R 318161 CDS YP_564177.1 91794526 4019704 3810007..3811959 1 NC_007954.1 ABC transporter related 3811959 4019704 Sden_3178 Shewanella denitrificans OS217 ABC transporter related YP_564177.1 3810007 D 318161 CDS YP_564178.1 91794527 4019705 3812204..3812647 1 NC_007954.1 hypothetical protein 3812647 4019705 Sden_3179 Shewanella denitrificans OS217 hypothetical protein YP_564178.1 3812204 D 318161 CDS YP_564179.1 91794528 4019706 complement(3812624..3813031) 1 NC_007954.1 histidine triad (HIT) protein 3813031 4019706 Sden_3180 Shewanella denitrificans OS217 histidine triad (HIT) protein YP_564179.1 3812624 R 318161 CDS YP_564180.1 91794529 4019707 3813319..3813798 1 NC_007954.1 regulatory protein, MarR 3813798 4019707 Sden_3181 Shewanella denitrificans OS217 regulatory protein, MarR YP_564180.1 3813319 D 318161 CDS YP_564181.1 91794530 4019708 complement(3814077..3815291) 1 NC_007954.1 major facilitator transporter 3815291 4019708 Sden_3182 Shewanella denitrificans OS217 major facilitator transporter YP_564181.1 3814077 R 318161 CDS YP_564182.1 91794531 4019709 complement(3815360..3816352) 1 NC_007954.1 aldo/keto reductase 3816352 4019709 Sden_3183 Shewanella denitrificans OS217 aldo/keto reductase YP_564182.1 3815360 R 318161 CDS YP_564183.1 91794532 4019710 complement(3816692..3818284) 1 NC_007954.1 glucose-methanol-choline oxidoreductase 3818284 4019710 Sden_3184 Shewanella denitrificans OS217 glucose-methanol-choline oxidoreductase YP_564183.1 3816692 R 318161 CDS YP_564184.1 91794533 4019711 complement(3818391..3818894) 1 NC_007954.1 twin-arginine translocation pathway signal 3818894 4019711 Sden_3185 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_564184.1 3818391 R 318161 CDS YP_564185.1 91794534 4019712 3818998..3819969 1 NC_007954.1 alpha/beta hydrolase fold 3819969 4019712 Sden_3186 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_564185.1 3818998 D 318161 CDS YP_564186.1 91794535 4019713 3819969..3820211 1 NC_007954.1 hypothetical protein 3820211 4019713 Sden_3187 Shewanella denitrificans OS217 hypothetical protein YP_564186.1 3819969 D 318161 CDS YP_564187.1 91794536 4019714 3820279..3821151 1 NC_007954.1 phosphoribulokinase 3821151 4019714 Sden_3188 Shewanella denitrificans OS217 phosphoribulokinase YP_564187.1 3820279 D 318161 CDS YP_564188.1 91794537 4019715 complement(3821205..3822002) 1 NC_007954.1 Sel1-like protein 3822002 4019715 Sden_3189 Shewanella denitrificans OS217 Sel1-like protein YP_564188.1 3821205 R 318161 CDS YP_564189.1 91794538 4019716 3822316..3822951 1 NC_007954.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3822951 4019716 Sden_3190 Shewanella denitrificans OS217 cAMP-regulatory protein YP_564189.1 3822316 D 318161 CDS YP_564190.1 91794539 4019717 complement(3823031..3824491) 1 NC_007954.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 3824491 astD 4019717 astD Shewanella denitrificans OS217 succinylglutamic semialdehyde dehydrogenase YP_564190.1 3823031 R 318161 CDS YP_564191.1 91794540 4019718 complement(3824501..3825520) 1 NC_007954.1 arginine N-succinyltransferase 3825520 4019718 Sden_3192 Shewanella denitrificans OS217 arginine N-succinyltransferase YP_564191.1 3824501 R 318161 CDS YP_564192.1 91794541 4019719 complement(3825624..3826841) 1 NC_007954.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3826841 argD 4019719 argD Shewanella denitrificans OS217 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_564192.1 3825624 R 318161 CDS YP_564193.1 91794542 4019720 complement(3827177..3828319) 1 NC_007954.1 hypothetical protein 3828319 4019720 Sden_3194 Shewanella denitrificans OS217 hypothetical protein YP_564193.1 3827177 R 318161 CDS YP_564194.1 91794543 4019721 complement(3828467..3830953) 1 NC_007954.1 peptidase S9, prolyl oligopeptidase active site region 3830953 4019721 Sden_3195 Shewanella denitrificans OS217 peptidase S9, prolyl oligopeptidase active site region YP_564194.1 3828467 R 318161 CDS YP_564195.1 91794544 4019722 complement(3830971..3831543) 1 NC_007954.1 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase 3831543 4019722 Sden_3196 Shewanella denitrificans OS217 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase YP_564195.1 3830971 R 318161 CDS YP_564196.1 91794545 4019723 complement(3831637..3832095) 1 NC_007954.1 ClpXP protease specificity-enhancing factor 3832095 4019723 Sden_3197 Shewanella denitrificans OS217 ClpXP protease specificity-enhancing factor YP_564196.1 3831637 R 318161 CDS YP_564197.1 91794546 4019724 complement(3832095..3832724) 1 NC_007954.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3832724 sspA 4019724 sspA Shewanella denitrificans OS217 stringent starvation protein A YP_564197.1 3832095 R 318161 CDS YP_564198.1 91794547 4019725 complement(3832819..3833514) 1 NC_007954.1 cytochrome c1 3833514 4019725 Sden_3199 Shewanella denitrificans OS217 cytochrome c1 YP_564198.1 3832819 R 318161 CDS YP_564199.1 91794548 4019726 complement(3833514..3834728) 1 NC_007954.1 cytochrome b/b6-like protein 3834728 4019726 Sden_3200 Shewanella denitrificans OS217 cytochrome b/b6-like protein YP_564199.1 3833514 R 318161 CDS YP_564200.1 91794549 4019727 complement(3834728..3835318) 1 NC_007954.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit 3835318 4019727 Sden_3201 Shewanella denitrificans OS217 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_564200.1 3834728 R 318161 CDS YP_564201.1 91794550 4019728 complement(3835770..3836666) 1 NC_007954.1 HflC protein 3836666 4019728 Sden_3202 Shewanella denitrificans OS217 HflC protein YP_564201.1 3835770 R 318161 CDS YP_564202.1 91794551 4019729 complement(3836670..3837830) 1 NC_007954.1 HflK protein 3837830 4019729 Sden_3203 Shewanella denitrificans OS217 HflK protein YP_564202.1 3836670 R 318161 CDS YP_564203.1 91794552 4019730 complement(3837863..3839170) 1 NC_007954.1 GTP-binding protein, HSR1-related 3839170 4019730 Sden_3204 Shewanella denitrificans OS217 GTP-binding protein, HSR1-related YP_564203.1 3837863 R 318161 CDS YP_564204.1 91794553 4019731 complement(3839194..3839463) 1 NC_007954.1 host factor Hfq 3839463 4019731 Sden_3205 Shewanella denitrificans OS217 host factor Hfq YP_564204.1 3839194 R 318161 CDS YP_564205.1 91794554 4019732 complement(3839547..3840446) 1 NC_007954.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3840446 miaA 4019732 miaA Shewanella denitrificans OS217 tRNA delta(2)-isopentenylpyrophosphate transferase YP_564205.1 3839547 R 318161 CDS YP_564206.1 91794555 4019733 complement(3840466..3842463) 1 NC_007954.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3842463 mutL 4019733 mutL Shewanella denitrificans OS217 DNA mismatch repair protein YP_564206.1 3840466 R 318161 CDS YP_564207.1 91794556 4019734 complement(3842470..3843837) 1 NC_007954.1 N-acetylmuramoyl-L-alanine amidase 3843837 4019734 Sden_3208 Shewanella denitrificans OS217 N-acetylmuramoyl-L-alanine amidase YP_564207.1 3842470 R 318161 CDS YP_564208.1 91794557 4019735 complement(3843840..3844313) 1 NC_007954.1 hypothetical protein 3844313 4019735 Sden_3209 Shewanella denitrificans OS217 hypothetical protein YP_564208.1 3843840 R 318161 CDS YP_564209.1 91794558 4019736 complement(3844443..3844898) 1 NC_007954.1 hypothetical protein 3844898 4019736 Sden_3210 Shewanella denitrificans OS217 hypothetical protein YP_564209.1 3844443 R 318161 CDS YP_564210.1 91794559 4019737 3845154..3845876 1 NC_007954.1 hypothetical protein 3845876 4019737 Sden_3211 Shewanella denitrificans OS217 hypothetical protein YP_564210.1 3845154 D 318161 CDS YP_564211.1 91794560 4019741 complement(3847172..3847717) 1 NC_007954.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3847717 4019741 Sden_3212 Shewanella denitrificans OS217 oligoribonuclease YP_564211.1 3847172 R 318161 CDS YP_564212.1 91794561 4019742 3847826..3848887 1 NC_007954.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3848887 4019742 Sden_3213 Shewanella denitrificans OS217 ribosome-associated GTPase YP_564212.1 3847826 D 318161 CDS YP_564213.1 91794562 4019743 3848920..3849789 1 NC_007954.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3849789 psd 4019743 psd Shewanella denitrificans OS217 phosphatidylserine decarboxylase YP_564213.1 3848920 D 318161 CDS YP_564214.1 91794563 4019744 3849953..3850675 1 NC_007954.1 glycerophosphoryl diester phosphodiesterase 3850675 4019744 Sden_3215 Shewanella denitrificans OS217 glycerophosphoryl diester phosphodiesterase YP_564214.1 3849953 D 318161 CDS YP_564215.1 91794564 4019745 complement(3850751..3851086) 1 NC_007954.1 hypothetical protein 3851086 4019745 Sden_3216 Shewanella denitrificans OS217 hypothetical protein YP_564215.1 3850751 R 318161 CDS YP_564216.1 91794565 4019746 3851274..3851465 1 NC_007954.1 BFD-like (2Fe-2S)-binding region 3851465 4019746 Sden_3217 Shewanella denitrificans OS217 BFD-like (2Fe-2S)-binding region YP_564216.1 3851274 D 318161 CDS YP_564217.1 91794566 4019747 complement(3851689..3854001) 1 NC_007954.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3854001 4019747 Sden_3218 Shewanella denitrificans OS217 DNA topoisomerase IV subunit A YP_564217.1 3851689 R 318161 CDS YP_564218.1 91794567 4019748 complement(3853994..3855154) 1 NC_007954.1 L-sorbosone dehydrogenase 3855154 4019748 Sden_3219 Shewanella denitrificans OS217 L-sorbosone dehydrogenase YP_564218.1 3853994 R 318161 CDS YP_564219.1 91794568 4019749 complement(3855291..3857177) 1 NC_007954.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3857177 4019749 Sden_3220 Shewanella denitrificans OS217 DNA topoisomerase IV subunit B YP_564219.1 3855291 R 318161 CDS YP_564220.1 91794569 4019750 complement(3857223..3857798) 1 NC_007954.1 hypothetical protein 3857798 4019750 Sden_3221 Shewanella denitrificans OS217 hypothetical protein YP_564220.1 3857223 R 318161 CDS YP_564221.1 91794570 4019751 complement(3857920..3858759) 1 NC_007954.1 metallophosphoesterase 3858759 4019751 Sden_3222 Shewanella denitrificans OS217 metallophosphoesterase YP_564221.1 3857920 R 318161 CDS YP_564222.1 91794571 4019752 complement(3858787..3859254) 1 NC_007954.1 hypothetical protein 3859254 4019752 Sden_3223 Shewanella denitrificans OS217 hypothetical protein YP_564222.1 3858787 R 318161 CDS YP_564223.1 91794572 4019753 complement(3859298..3859921) 1 NC_007954.1 nucleoside diphosphate pyrophosphatase 3859921 4019753 Sden_3224 Shewanella denitrificans OS217 nucleoside diphosphate pyrophosphatase YP_564223.1 3859298 R 318161 CDS YP_564224.1 91794573 4019754 3860278..3861576 1 NC_007954.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3861576 tolC 4019754 tolC Shewanella denitrificans OS217 outer membrane channel protein YP_564224.1 3860278 D 318161 CDS YP_564225.1 91794574 4019755 complement(3861878..3862621) 1 NC_007954.1 hypothetical protein 3862621 4019755 Sden_3226 Shewanella denitrificans OS217 hypothetical protein YP_564225.1 3861878 R 318161 CDS YP_564226.1 91794575 4019756 complement(3862687..3863658) 1 NC_007954.1 hypothetical protein 3863658 4019756 Sden_3227 Shewanella denitrificans OS217 hypothetical protein YP_564226.1 3862687 R 318161 CDS YP_564227.1 91794576 4019757 complement(3863671..3864162) 1 NC_007954.1 hypothetical protein 3864162 4019757 Sden_3228 Shewanella denitrificans OS217 hypothetical protein YP_564227.1 3863671 R 318161 CDS YP_564228.1 91794577 4019758 3864198..3864935 1 NC_007954.1 enoyl-CoA hydratase/isomerase 3864935 4019758 Sden_3229 Shewanella denitrificans OS217 enoyl-CoA hydratase/isomerase YP_564228.1 3864198 D 318161 CDS YP_564229.1 91794578 4019759 complement(3865014..3865214) 1 NC_007954.1 hypothetical protein 3865214 4019759 Sden_3230 Shewanella denitrificans OS217 hypothetical protein YP_564229.1 3865014 R 318161 CDS YP_564230.1 91794579 4019760 complement(3865419..3865736) 1 NC_007954.1 hypothetical protein 3865736 4019760 Sden_3231 Shewanella denitrificans OS217 hypothetical protein YP_564230.1 3865419 R 318161 CDS YP_564231.1 91794580 4019761 complement(3866061..3867044) 1 NC_007954.1 tRNA-dihydrouridine synthase A 3867044 4019761 Sden_3232 Shewanella denitrificans OS217 tRNA-dihydrouridine synthase A YP_564231.1 3866061 R 318161 CDS YP_564232.1 91794581 4019762 3867209..3868279 1 NC_007954.1 phage integrase 3868279 4019762 Sden_3233 Shewanella denitrificans OS217 phage integrase YP_564232.1 3867209 D 318161 CDS YP_564233.1 91794582 4019763 3868297..3868869 1 NC_007954.1 hypothetical protein 3868869 4019763 Sden_3234 Shewanella denitrificans OS217 hypothetical protein YP_564233.1 3868297 D 318161 CDS YP_564234.1 91794583 4019764 complement(3868870..3870126) 1 NC_007954.1 DNA-directed DNA polymerase 3870126 4019764 Sden_3235 Shewanella denitrificans OS217 DNA-directed DNA polymerase YP_564234.1 3868870 R 318161 CDS YP_564235.1 91794584 4019765 complement(3870127..3870534) 1 NC_007954.1 peptidase S24, S26A and S26B 3870534 4019765 Sden_3236 Shewanella denitrificans OS217 peptidase S24, S26A and S26B YP_564235.1 3870127 R 318161 CDS YP_564236.1 91794585 4019766 complement(3870627..3870839) 1 NC_007954.1 hypothetical protein 3870839 4019766 Sden_3237 Shewanella denitrificans OS217 hypothetical protein YP_564236.1 3870627 R 318161 CDS YP_564237.1 91794586 4019767 complement(3870865..3872646) 1 NC_007954.1 hypothetical protein 3872646 4019767 Sden_3238 Shewanella denitrificans OS217 hypothetical protein YP_564237.1 3870865 R 318161 CDS YP_564238.1 91794587 4019768 complement(3872650..3872949) 1 NC_007954.1 hypothetical protein 3872949 4019768 Sden_3239 Shewanella denitrificans OS217 hypothetical protein YP_564238.1 3872650 R 318161 CDS YP_564239.1 91794588 4019769 complement(3872942..3873946) 1 NC_007954.1 hypothetical protein 3873946 4019769 Sden_3240 Shewanella denitrificans OS217 hypothetical protein YP_564239.1 3872942 R 318161 CDS YP_564240.1 91794589 4019770 complement(3873971..3876376) 1 NC_007954.1 hypothetical protein 3876376 4019770 Sden_3241 Shewanella denitrificans OS217 hypothetical protein YP_564240.1 3873971 R 318161 CDS YP_564241.1 91794590 4019771 complement(3876387..3876677) 1 NC_007954.1 hypothetical protein 3876677 4019771 Sden_3242 Shewanella denitrificans OS217 hypothetical protein YP_564241.1 3876387 R 318161 CDS YP_564242.1 91794591 4019772 complement(3876785..3881044) 1 NC_007954.1 Phage tail tape measure protein TP901, core region 3881044 4019772 Sden_3243 Shewanella denitrificans OS217 Phage tail tape measure protein TP901, core region YP_564242.1 3876785 R 318161 CDS YP_564243.1 91794592 4019773 complement(3881135..3881854) 1 NC_007954.1 hypothetical protein 3881854 4019773 Sden_3244 Shewanella denitrificans OS217 hypothetical protein YP_564243.1 3881135 R 318161 CDS YP_564244.1 91794593 4019774 complement(3881851..3882276) 1 NC_007954.1 hypothetical protein 3882276 4019774 Sden_3245 Shewanella denitrificans OS217 hypothetical protein YP_564244.1 3881851 R 318161 CDS YP_564245.1 91794594 4019775 complement(3882296..3882853) 1 NC_007954.1 hypothetical protein 3882853 4019775 Sden_3246 Shewanella denitrificans OS217 hypothetical protein YP_564245.1 3882296 R 318161 CDS YP_564246.1 91794595 4019776 complement(3882857..3883189) 1 NC_007954.1 hypothetical protein 3883189 4019776 Sden_3247 Shewanella denitrificans OS217 hypothetical protein YP_564246.1 3882857 R 318161 CDS YP_564247.1 91794596 4019777 complement(3883182..3883502) 1 NC_007954.1 Gifsy-2 prophage; RecA/RadA recombinase 3883502 4019777 Sden_3248 Shewanella denitrificans OS217 Gifsy-2 prophage; RecA/RadA recombinase YP_564247.1 3883182 R 318161 CDS YP_564248.1 91794597 4019778 complement(3883568..3885571) 1 NC_007954.1 peptidase S14, ClpP 3885571 4019778 Sden_3249 Shewanella denitrificans OS217 peptidase S14, ClpP YP_564248.1 3883568 R 318161 CDS YP_564249.1 91794598 4019779 complement(3885564..3887138) 1 NC_007954.1 phage portal protein, lambda 3887138 4019779 Sden_3250 Shewanella denitrificans OS217 phage portal protein, lambda YP_564249.1 3885564 R 318161 CDS YP_564250.1 91794599 4019780 complement(3887253..3887459) 1 NC_007954.1 hypothetical protein 3887459 4019780 Sden_3251 Shewanella denitrificans OS217 hypothetical protein YP_564250.1 3887253 R 318161 CDS YP_564251.1 91794600 4019781 complement(3887488..3889392) 1 NC_007954.1 phage terminase GpA 3889392 4019781 Sden_3252 Shewanella denitrificans OS217 phage terminase GpA YP_564251.1 3887488 R 318161 CDS YP_564252.1 91794601 4019782 complement(3889445..3889975) 1 NC_007954.1 phage DNA packaging Nu1 3889975 4019782 Sden_3253 Shewanella denitrificans OS217 phage DNA packaging Nu1 YP_564252.1 3889445 R 318161 CDS YP_564253.1 91794602 4019783 complement(3889975..3890349) 1 NC_007954.1 hypothetical protein 3890349 4019783 Sden_3254 Shewanella denitrificans OS217 hypothetical protein YP_564253.1 3889975 R 318161 CDS YP_564254.1 91794603 4019784 complement(3890364..3890801) 1 NC_007954.1 hypothetical protein 3890801 4019784 Sden_3255 Shewanella denitrificans OS217 hypothetical protein YP_564254.1 3890364 R 318161 CDS YP_564255.1 91794604 4019785 complement(3890791..3891270) 1 NC_007954.1 glycoside hydrolase family protein 3891270 4019785 Sden_3256 Shewanella denitrificans OS217 glycoside hydrolase family protein YP_564255.1 3890791 R 318161 CDS YP_564256.1 91794605 4019786 complement(3891267..3891614) 1 NC_007954.1 hypothetical protein 3891614 4019786 Sden_3257 Shewanella denitrificans OS217 hypothetical protein YP_564256.1 3891267 R 318161 CDS YP_564257.1 91794606 4019787 complement(3892165..3892809) 1 NC_007954.1 hypothetical protein 3892809 4019787 Sden_3258 Shewanella denitrificans OS217 hypothetical protein YP_564257.1 3892165 R 318161 CDS YP_564258.1 91794607 4019788 complement(3892858..3893217) 1 NC_007954.1 hypothetical protein 3893217 4019788 Sden_3259 Shewanella denitrificans OS217 hypothetical protein YP_564258.1 3892858 R 318161 CDS YP_564259.1 91794608 4019789 complement(3893204..3893434) 1 NC_007954.1 transciptional regulator 3893434 4019789 Sden_3260 Shewanella denitrificans OS217 transciptional regulator YP_564259.1 3893204 R 318161 CDS YP_564260.1 91794609 4019809 complement(3893477..3894730) 1 NC_007954.1 phage integrase 3894730 4019809 Sden_3261 Shewanella denitrificans OS217 phage integrase YP_564260.1 3893477 R 318161 CDS YP_564261.1 91794610 4019810 complement(3894944..3895609) 1 NC_007954.1 replication P 3895609 4019810 Sden_3262 Shewanella denitrificans OS217 replication P YP_564261.1 3894944 R 318161 CDS YP_564262.1 91794611 4019811 complement(3895606..3896490) 1 NC_007954.1 hypothetical protein 3896490 4019811 Sden_3263 Shewanella denitrificans OS217 hypothetical protein YP_564262.1 3895606 R 318161 CDS YP_564263.1 91794612 4019812 complement(3897013..3897255) 1 NC_007954.1 hypothetical protein 3897255 4019812 Sden_3264 Shewanella denitrificans OS217 hypothetical protein YP_564263.1 3897013 R 318161 CDS YP_564264.1 91794613 4019813 complement(3897265..3897906) 1 NC_007954.1 hypothetical protein 3897906 4019813 Sden_3265 Shewanella denitrificans OS217 hypothetical protein YP_564264.1 3897265 R 318161 CDS YP_564265.1 91794614 4019814 complement(3898002..3898607) 1 NC_007954.1 hypothetical protein 3898607 4019814 Sden_3266 Shewanella denitrificans OS217 hypothetical protein YP_564265.1 3898002 R 318161 CDS YP_564266.1 91794615 4019815 complement(3898639..3898842) 1 NC_007954.1 hypothetical protein 3898842 4019815 Sden_3267 Shewanella denitrificans OS217 hypothetical protein YP_564266.1 3898639 R 318161 CDS YP_564267.1 91794616 4019816 3898948..3899637 1 NC_007954.1 transciptional regulator 3899637 4019816 Sden_3268 Shewanella denitrificans OS217 transciptional regulator YP_564267.1 3898948 D 318161 CDS YP_564268.1 91794617 4019817 3899904..3901796 1 NC_007954.1 N-6 DNA methylase 3901796 4019817 Sden_3269 Shewanella denitrificans OS217 N-6 DNA methylase YP_564268.1 3899904 D 318161 CDS YP_564269.1 91794618 4019818 3901799..3902776 1 NC_007954.1 hypothetical protein 3902776 4019818 Sden_3270 Shewanella denitrificans OS217 hypothetical protein YP_564269.1 3901799 D 318161 CDS YP_564270.1 91794619 4019819 complement(3903329..3904180) 1 NC_007954.1 hypothetical protein 3904180 4019819 Sden_3271 Shewanella denitrificans OS217 hypothetical protein YP_564270.1 3903329 R 318161 CDS YP_564271.1 91794620 4019820 3904785..3905117 1 NC_007954.1 hypothetical protein 3905117 4019820 Sden_3272 Shewanella denitrificans OS217 hypothetical protein YP_564271.1 3904785 D 318161 CDS YP_564272.1 91794621 4019821 3905321..3905572 1 NC_007954.1 hypothetical protein 3905572 4019821 Sden_3273 Shewanella denitrificans OS217 hypothetical protein YP_564272.1 3905321 D 318161 CDS YP_564273.1 91794622 4019822 3905597..3905944 1 NC_007954.1 hypothetical protein 3905944 4019822 Sden_3274 Shewanella denitrificans OS217 hypothetical protein YP_564273.1 3905597 D 318161 CDS YP_564274.1 91794623 4019823 3905941..3906264 1 NC_007954.1 GP46 3906264 4019823 Sden_3275 Shewanella denitrificans OS217 GP46 YP_564274.1 3905941 D 318161 CDS YP_564275.1 91794624 4019824 3906261..3906527 1 NC_007954.1 hypothetical protein 3906527 4019824 Sden_3276 Shewanella denitrificans OS217 hypothetical protein YP_564275.1 3906261 D 318161 CDS YP_564276.1 91794625 4019825 3906524..3906784 1 NC_007954.1 hypothetical protein 3906784 4019825 Sden_3277 Shewanella denitrificans OS217 hypothetical protein YP_564276.1 3906524 D 318161 CDS YP_564277.1 91794626 4019826 3906781..3907032 1 NC_007954.1 hypothetical protein 3907032 4019826 Sden_3278 Shewanella denitrificans OS217 hypothetical protein YP_564277.1 3906781 D 318161 CDS YP_564278.1 91794627 4019827 3907099..3907434 1 NC_007954.1 hypothetical protein 3907434 4019827 Sden_3279 Shewanella denitrificans OS217 hypothetical protein YP_564278.1 3907099 D 318161 CDS YP_564279.1 91794628 4019828 complement(3907472..3908257) 1 NC_007954.1 hypothetical protein 3908257 4019828 Sden_3280 Shewanella denitrificans OS217 hypothetical protein YP_564279.1 3907472 R 318161 CDS YP_564280.1 91794629 4019829 complement(3908450..3908992) 1 NC_007954.1 yfeABCD locus regulator 3908992 4019829 Sden_3281 Shewanella denitrificans OS217 yfeABCD locus regulator YP_564280.1 3908450 R 318161 CDS YP_564281.1 91794630 4019830 complement(3909649..3909819) 1 NC_007954.1 hypothetical protein 3909819 4019830 Sden_3282 Shewanella denitrificans OS217 hypothetical protein YP_564281.1 3909649 R 318161 CDS YP_564282.1 91794631 4019831 complement(3909855..3910220) 1 NC_007954.1 hypothetical protein 3910220 4019831 Sden_3283 Shewanella denitrificans OS217 hypothetical protein YP_564282.1 3909855 R 318161 CDS YP_564283.1 91794632 4019832 3910444..3910860 1 NC_007954.1 peptidyl-tRNA hydrolase domain protein 3910860 4019832 Sden_3284 Shewanella denitrificans OS217 peptidyl-tRNA hydrolase domain protein YP_564283.1 3910444 D 318161 CDS YP_564284.1 91794633 4019833 3910937..3911392 1 NC_007954.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3911392 4019833 Sden_3285 Shewanella denitrificans OS217 3-dehydroquinate dehydratase YP_564284.1 3910937 D 318161 CDS YP_564285.1 91794634 4019834 3911538..3912545 1 NC_007954.1 hypothetical protein 3912545 4019834 Sden_3286 Shewanella denitrificans OS217 hypothetical protein YP_564285.1 3911538 D 318161 CDS YP_564286.1 91794635 4019835 complement(3912621..3914378) 1 NC_007954.1 twin-arginine translocation pathway signal 3914378 4019835 Sden_3287 Shewanella denitrificans OS217 twin-arginine translocation pathway signal YP_564286.1 3912621 R 318161 CDS YP_564287.1 91794636 4019836 3914677..3915105 1 NC_007954.1 CBS domain-containing protein 3915105 4019836 Sden_3288 Shewanella denitrificans OS217 CBS domain-containing protein YP_564287.1 3914677 D 318161 CDS YP_564288.1 91794637 4019837 complement(3915188..3916816) 1 NC_007954.1 endonuclease I 3916816 4019837 Sden_3289 Shewanella denitrificans OS217 endonuclease I YP_564288.1 3915188 R 318161 CDS YP_564289.1 91794638 4019838 3917296..3919116 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 3919116 4019838 Sden_3290 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_564289.1 3917296 D 318161 CDS YP_564290.1 91794639 4019839 complement(3919235..3920434) 1 NC_007954.1 hypothetical protein 3920434 4019839 Sden_3291 Shewanella denitrificans OS217 hypothetical protein YP_564290.1 3919235 R 318161 CDS YP_564291.1 91794640 4019840 complement(3920461..3921933) 1 NC_007954.1 RNA-metabolising metallo-beta-lactamase 3921933 4019840 Sden_3292 Shewanella denitrificans OS217 RNA-metabolising metallo-beta-lactamase YP_564291.1 3920461 R 318161 CDS YP_564292.1 91794641 4019841 3922323..3923486 1 NC_007954.1 chemotaxis sensory transducer 3923486 4019841 Sden_3293 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564292.1 3922323 D 318161 CDS YP_564293.1 91794642 4019842 3923534..3923896 1 NC_007954.1 response regulator receiver 3923896 4019842 Sden_3294 Shewanella denitrificans OS217 response regulator receiver YP_564293.1 3923534 D 318161 CDS YP_564294.1 91794643 4019843 3923928..3924242 1 NC_007954.1 Sulfate transporter/antisigma-factor antagonist STAS 3924242 4019843 Sden_3295 Shewanella denitrificans OS217 Sulfate transporter/antisigma-factor antagonist STAS YP_564294.1 3923928 D 318161 CDS YP_564295.1 91794644 4019844 3924286..3926487 1 NC_007954.1 CheW-like protein 3926487 4019844 Sden_3296 Shewanella denitrificans OS217 CheW-like protein YP_564295.1 3924286 D 318161 CDS YP_564296.1 91794645 4019845 3926520..3928151 1 NC_007954.1 chemotaxis sensory transducer 3928151 4019845 Sden_3297 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564296.1 3926520 D 318161 CDS YP_564297.1 91794646 4019846 3928161..3928724 1 NC_007954.1 CheW-like protein 3928724 4019846 Sden_3298 Shewanella denitrificans OS217 CheW-like protein YP_564297.1 3928161 D 318161 CDS YP_564298.1 91794647 4019847 3928777..3929604 1 NC_007954.1 protein-glutamate O-methyltransferase 3929604 4019847 Sden_3299 Shewanella denitrificans OS217 protein-glutamate O-methyltransferase YP_564298.1 3928777 D 318161 CDS YP_564299.1 91794648 4019848 3929601..3930113 1 NC_007954.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 3930113 4019848 Sden_3300 Shewanella denitrificans OS217 chemoreceptor glutamine deamidase CheD YP_564299.1 3929601 D 318161 CDS YP_564300.1 91794649 4019849 3930110..3931186 1 NC_007954.1 protein-glutamate methylesterase 3931186 4019849 Sden_3301 Shewanella denitrificans OS217 protein-glutamate methylesterase YP_564300.1 3930110 D 318161 CDS YP_564301.1 91794650 4019850 complement(3931209..3931703) 1 NC_007954.1 peptidyl-prolyl cis-trans isomerase, cyclophilin type 3931703 4019850 Sden_3302 Shewanella denitrificans OS217 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_564301.1 3931209 R 318161 CDS YP_564302.1 91794651 4019851 complement(3931857..3933407) 1 NC_007954.1 amino acid/peptide transporter 3933407 4019851 Sden_3303 Shewanella denitrificans OS217 amino acid/peptide transporter YP_564302.1 3931857 R 318161 CDS YP_564303.1 91794652 4019852 3933561..3935303 1 NC_007954.1 transcriptional regulatory protein-like protein 3935303 4019852 Sden_3304 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_564303.1 3933561 D 318161 CDS YP_564304.1 91794653 4019853 complement(3935451..3936242) 1 NC_007954.1 hypothetical protein 3936242 4019853 Sden_3305 Shewanella denitrificans OS217 hypothetical protein YP_564304.1 3935451 R 318161 CDS YP_564305.1 91794654 4019854 3936622..3938757 1 NC_007954.1 peptidyl-dipeptidase Dcp 3938757 4019854 Sden_3306 Shewanella denitrificans OS217 peptidyl-dipeptidase Dcp YP_564305.1 3936622 D 318161 CDS YP_564306.1 91794655 4019855 3939048..3939908 1 NC_007954.1 extracellular solute-binding protein 3939908 4019855 Sden_3307 Shewanella denitrificans OS217 extracellular solute-binding protein YP_564306.1 3939048 D 318161 CDS YP_564307.1 91794656 4019856 3940047..3940325 1 NC_007954.1 PpiC-type peptidyl-prolyl cis-trans isomerase 3940325 4019856 Sden_3308 Shewanella denitrificans OS217 PpiC-type peptidyl-prolyl cis-trans isomerase YP_564307.1 3940047 D 318161 CDS YP_564308.1 91794657 4019857 complement(3940765..3941046) 1 NC_007954.1 hypothetical protein 3941046 4019857 Sden_3309 Shewanella denitrificans OS217 hypothetical protein YP_564308.1 3940765 R 318161 CDS YP_564309.1 91794658 4019858 complement(3941176..3941673) 1 NC_007954.1 hypothetical protein 3941673 4019858 Sden_3310 Shewanella denitrificans OS217 hypothetical protein YP_564309.1 3941176 R 318161 CDS YP_564310.1 91794659 4019859 complement(3942093..3943136) 1 NC_007954.1 transposase IS116/IS110/IS902 3943136 4019859 Sden_3311 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_564310.1 3942093 R 318161 CDS YP_564311.1 91794660 4019860 complement(3943196..3943588) 1 NC_007954.1 hypothetical protein 3943588 4019860 Sden_3312 Shewanella denitrificans OS217 hypothetical protein YP_564311.1 3943196 R 318161 CDS YP_564312.1 91794661 4019861 complement(3944411..3945106) 1 NC_007954.1 single-strand binding protein 3945106 4019861 Sden_3313 Shewanella denitrificans OS217 single-strand binding protein YP_564312.1 3944411 R 318161 CDS YP_564313.1 91794662 4019862 complement(3945195..3946562) 1 NC_007954.1 major facilitator transporter 3946562 4019862 Sden_3314 Shewanella denitrificans OS217 major facilitator transporter YP_564313.1 3945195 R 318161 CDS YP_564314.1 91794663 4019863 3946820..3949756 1 NC_007954.1 excinuclease ABC, A subunit 3949756 4019863 Sden_3315 Shewanella denitrificans OS217 excinuclease ABC, A subunit YP_564314.1 3946820 D 318161 CDS YP_564315.1 91794664 4019864 3949803..3950828 1 NC_007954.1 peptidase M28 3950828 4019864 Sden_3316 Shewanella denitrificans OS217 peptidase M28 YP_564315.1 3949803 D 318161 CDS YP_564316.1 91794665 4019865 3951048..3952883 1 NC_007954.1 DEAD/DEAH box helicase-like protein 3952883 4019865 Sden_3317 Shewanella denitrificans OS217 DEAD/DEAH box helicase-like protein YP_564316.1 3951048 D 318161 CDS YP_564317.1 91794666 4019866 complement(3953076..3954446) 1 NC_007954.1 Integrins alpha chain 3954446 4019866 Sden_3318 Shewanella denitrificans OS217 Integrins alpha chain YP_564317.1 3953076 R 318161 CDS YP_564318.1 91794667 4019867 3954575..3956650 1 NC_007954.1 transcriptional regulatory protein-like protein 3956650 4019867 Sden_3319 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_564318.1 3954575 D 318161 CDS YP_564319.1 91794668 4019868 3956651..3957664 1 NC_007954.1 hypothetical protein 3957664 4019868 Sden_3320 Shewanella denitrificans OS217 hypothetical protein YP_564319.1 3956651 D 318161 CDS YP_564320.1 91794669 4019869 complement(3957809..3958420) 1 NC_007954.1 hypothetical protein 3958420 4019869 Sden_3321 Shewanella denitrificans OS217 hypothetical protein YP_564320.1 3957809 R 318161 CDS YP_564321.1 91794670 4019870 complement(3958704..3959240) 1 NC_007954.1 Alpha/beta hydrolase fold-3 3959240 4019870 Sden_3322 Shewanella denitrificans OS217 Alpha/beta hydrolase fold-3 YP_564321.1 3958704 R 318161 CDS YP_564322.1 91794671 4019871 complement(3959543..3960520) 1 NC_007954.1 hypothetical protein 3960520 4019871 Sden_3323 Shewanella denitrificans OS217 hypothetical protein YP_564322.1 3959543 R 318161 CDS YP_564323.1 91794672 4019872 complement(3960705..3961211) 1 NC_007954.1 hypothetical protein 3961211 4019872 Sden_3324 Shewanella denitrificans OS217 hypothetical protein YP_564323.1 3960705 R 318161 CDS YP_564324.1 91794673 4019873 3961524..3962726 1 NC_007954.1 transposase, IS4 3962726 4019873 Sden_3325 Shewanella denitrificans OS217 transposase, IS4 YP_564324.1 3961524 D 318161 CDS YP_564325.1 91794674 4019874 complement(3963175..3963429) 1 NC_007954.1 hypothetical protein 3963429 4019874 Sden_3326 Shewanella denitrificans OS217 hypothetical protein YP_564325.1 3963175 R 318161 CDS YP_564326.1 91794675 4019875 complement(3963607..3965055) 1 NC_007954.1 peptidase U62, modulator of DNA gyrase 3965055 4019875 Sden_3327 Shewanella denitrificans OS217 peptidase U62, modulator of DNA gyrase YP_564326.1 3963607 R 318161 CDS YP_564327.1 91794676 4019876 complement(3965093..3965932) 1 NC_007954.1 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3965932 4019876 Sden_3328 Shewanella denitrificans OS217 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_564327.1 3965093 R 318161 CDS YP_564328.1 91794677 4019877 complement(3965942..3970201) 1 NC_007954.1 hypothetical protein 3970201 4019877 Sden_3329 Shewanella denitrificans OS217 hypothetical protein YP_564328.1 3965942 R 318161 CDS YP_564329.1 91794678 4019878 complement(3970201..3971691) 1 NC_007954.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3971691 4019878 Sden_3330 Shewanella denitrificans OS217 ribonuclease G YP_564329.1 3970201 R 318161 CDS YP_564330.1 91794679 4019879 complement(3971749..3972345) 1 NC_007954.1 maf protein 3972345 4019879 Sden_3331 Shewanella denitrificans OS217 maf protein YP_564330.1 3971749 R 318161 CDS YP_564331.1 91794680 4019880 complement(3972348..3972839) 1 NC_007954.1 rod shape-determining protein MreD 3972839 4019880 Sden_3332 Shewanella denitrificans OS217 rod shape-determining protein MreD YP_564331.1 3972348 R 318161 CDS YP_564332.1 91794681 4019881 complement(3972832..3973716) 1 NC_007954.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3973716 4019881 Sden_3333 Shewanella denitrificans OS217 rod shape-determining protein MreC YP_564332.1 3972832 R 318161 CDS YP_564333.1 91794682 4019882 complement(3973773..3974819) 1 NC_007954.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3974819 4019882 Sden_3334 Shewanella denitrificans OS217 rod shape-determining protein MreB YP_564333.1 3973773 R 318161 CDS YP_564334.1 91794683 4019883 complement(3975037..3979698) 1 NC_007954.1 hypothetical protein 3979698 4019883 Sden_3335 Shewanella denitrificans OS217 hypothetical protein YP_564334.1 3975037 R 318161 CDS YP_564335.1 91794684 4019884 complement(3979688..3980137) 1 NC_007954.1 MSHA biogenesis protein MshP 3980137 4019884 Sden_3336 Shewanella denitrificans OS217 MSHA biogenesis protein MshP YP_564335.1 3979688 R 318161 CDS YP_564336.1 91794685 4019885 complement(3980127..3980963) 1 NC_007954.1 MSHA biogenesis protein MshO precursor 3980963 4019885 Sden_3337 Shewanella denitrificans OS217 MSHA biogenesis protein MshO precursor YP_564336.1 3980127 R 318161 CDS YP_564337.1 91794686 4019886 complement(3980963..3981517) 1 NC_007954.1 MSHA pilin protein MshD 3981517 4019886 Sden_3338 Shewanella denitrificans OS217 MSHA pilin protein MshD YP_564337.1 3980963 R 318161 CDS YP_564338.1 91794687 4019887 complement(3981507..3981980) 1 NC_007954.1 methylation 3981980 4019887 Sden_3339 Shewanella denitrificans OS217 methylation YP_564338.1 3981507 R 318161 CDS YP_564339.1 91794688 4019888 complement(3982161..3982679) 1 NC_007954.1 methylation 3982679 4019888 Sden_3340 Shewanella denitrificans OS217 methylation YP_564339.1 3982161 R 318161 CDS YP_564340.1 91794689 4019889 complement(3982830..3983447) 1 NC_007954.1 methylation 3983447 4019889 Sden_3341 Shewanella denitrificans OS217 methylation YP_564340.1 3982830 R 318161 CDS YP_564341.1 91794690 4019890 complement(3983601..3984131) 1 NC_007954.1 hypothetical protein 3984131 4019890 Sden_3342 Shewanella denitrificans OS217 hypothetical protein YP_564341.1 3983601 R 318161 CDS YP_564342.1 91794691 4019891 complement(3984158..3985375) 1 NC_007954.1 type II secretion system protein 3985375 4019891 Sden_3343 Shewanella denitrificans OS217 type II secretion system protein YP_564342.1 3984158 R 318161 CDS YP_564343.1 91794692 4019892 complement(3985378..3987138) 1 NC_007954.1 type II secretion system protein E 3987138 4019892 Sden_3344 Shewanella denitrificans OS217 type II secretion system protein E YP_564343.1 3985378 R 318161 CDS YP_564344.1 91794693 4019893 complement(3987135..3988394) 1 NC_007954.1 tetratricopeptide TPR_2 3988394 4019893 Sden_3345 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_564344.1 3987135 R 318161 CDS YP_564345.1 91794694 4019894 complement(3988391..3989305) 1 NC_007954.1 MSHA biogenesis protein MshM 3989305 4019894 Sden_3346 Shewanella denitrificans OS217 MSHA biogenesis protein MshM YP_564345.1 3988391 R 318161 CDS YP_564346.1 91794695 4019895 complement(3989317..3990966) 1 NC_007954.1 type II and III secretion system protein 3990966 4019895 Sden_3347 Shewanella denitrificans OS217 type II and III secretion system protein YP_564346.1 3989317 R 318161 CDS YP_564347.1 91794696 4019896 complement(3990982..3991305) 1 NC_007954.1 MSHA biogenesis protein MshK 3991305 4019896 Sden_3348 Shewanella denitrificans OS217 MSHA biogenesis protein MshK YP_564347.1 3990982 R 318161 CDS YP_564348.1 91794697 4019897 complement(3991286..3991942) 1 NC_007954.1 MSHA biogenesis protein MshJ 3991942 4019897 Sden_3349 Shewanella denitrificans OS217 MSHA biogenesis protein MshJ YP_564348.1 3991286 R 318161 CDS YP_564349.1 91794698 4019898 complement(3991939..3992547) 1 NC_007954.1 hypothetical protein 3992547 4019898 Sden_3350 Shewanella denitrificans OS217 hypothetical protein YP_564349.1 3991939 R 318161 CDS YP_564350.1 91794699 4019899 complement(3992547..3993425) 1 NC_007954.1 biogenesis protein MshI 3993425 4019899 Sden_3351 Shewanella denitrificans OS217 biogenesis protein MshI YP_564350.1 3992547 R 318161 CDS YP_564351.1 91794700 4019900 complement(3993595..3995568) 1 NC_007954.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3995568 4019900 Sden_3352 Shewanella denitrificans OS217 regulatory protein CsrD YP_564351.1 3993595 R 318161 CDS YP_564352.1 91794701 4019901 complement(3995712..3996950) 1 NC_007954.1 malate dehydrogenase 3996950 4019901 Sden_3353 Shewanella denitrificans OS217 malate dehydrogenase YP_564352.1 3995712 R 318161 CDS YP_564353.1 91794702 4019902 complement(3997359..3997571) 1 NC_007954.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3997571 rpmE 4019902 rpmE Shewanella denitrificans OS217 50S ribosomal protein L31 YP_564353.1 3997359 R 318161 CDS YP_564354.1 91794703 4019903 complement(3997762..3998685) 1 NC_007954.1 hypothetical protein 3998685 4019903 Sden_3355 Shewanella denitrificans OS217 hypothetical protein YP_564354.1 3997762 R 318161 CDS YP_564355.1 91794704 4019904 3998818..4001022 1 NC_007954.1 primosomal protein N' 4001022 4019904 Sden_3356 Shewanella denitrificans OS217 primosomal protein N' YP_564355.1 3998818 D 318161 CDS YP_564356.1 91794705 4019905 4001131..4002876 1 NC_007954.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4002876 argS 4019905 argS Shewanella denitrificans OS217 arginyl-tRNA synthetase YP_564356.1 4001131 D 318161 CDS YP_564357.1 91794706 4019906 4002879..4003475 1 NC_007954.1 sporulation related 4003475 4019906 Sden_3358 Shewanella denitrificans OS217 sporulation related YP_564357.1 4002879 D 318161 CDS YP_564358.1 91794707 4019907 complement(4003910..4004956) 1 NC_007954.1 divergent AAA region 4004956 4019907 Sden_3359 Shewanella denitrificans OS217 divergent AAA region YP_564358.1 4003910 R 318161 CDS YP_564359.1 91794708 4019908 complement(4005405..4006418) 1 NC_007954.1 transposase IS116/IS110/IS902 4006418 4019908 Sden_3360 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_564359.1 4005405 R 318161 CDS YP_564360.1 91794709 4019909 4007499..4008023 1 NC_007954.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4008023 4019909 Sden_3361 Shewanella denitrificans OS217 ATP-dependent protease peptidase subunit YP_564360.1 4007499 D 318161 CDS YP_564361.1 91794710 4019910 4008044..4009369 1 NC_007954.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4009369 hslU 4019910 hslU Shewanella denitrificans OS217 ATP-dependent protease ATP-binding subunit HslU YP_564361.1 4008044 D 318161 CDS YP_564362.1 91794711 4019911 4009560..4009943 1 NC_007954.1 hypothetical protein 4009943 4019911 Sden_3363 Shewanella denitrificans OS217 hypothetical protein YP_564362.1 4009560 D 318161 CDS YP_564363.1 91794712 4019912 4010287..4010538 1 NC_007954.1 hypothetical protein 4010538 4019912 Sden_3364 Shewanella denitrificans OS217 hypothetical protein YP_564363.1 4010287 D 318161 CDS YP_564364.1 91794713 4019913 complement(4010620..4011150) 1 NC_007954.1 hypothetical protein 4011150 4019913 Sden_3365 Shewanella denitrificans OS217 hypothetical protein YP_564364.1 4010620 R 318161 CDS YP_564365.1 91794714 4019914 complement(4011147..4011674) 1 NC_007954.1 hypothetical protein 4011674 4019914 Sden_3366 Shewanella denitrificans OS217 hypothetical protein YP_564365.1 4011147 R 318161 CDS YP_564366.1 91794715 4019915 complement(4011726..4012238) 1 NC_007954.1 hypothetical protein 4012238 4019915 Sden_3367 Shewanella denitrificans OS217 hypothetical protein YP_564366.1 4011726 R 318161 CDS YP_564367.1 91794716 4019916 complement(4012285..4013565) 1 NC_007954.1 cyclopropane-fatty-acyl-phospholipid synthase 4013565 4019916 Sden_3368 Shewanella denitrificans OS217 cyclopropane-fatty-acyl-phospholipid synthase YP_564367.1 4012285 R 318161 CDS YP_564368.1 91794717 4019917 complement(4013609..4014433) 1 NC_007954.1 hypothetical protein 4014433 4019917 Sden_3369 Shewanella denitrificans OS217 hypothetical protein YP_564368.1 4013609 R 318161 CDS YP_564369.1 91794718 4019918 complement(4014433..4015686) 1 NC_007954.1 amine oxidase 4015686 4019918 Sden_3370 Shewanella denitrificans OS217 amine oxidase YP_564369.1 4014433 R 318161 CDS YP_564370.1 91794719 4019919 complement(4015683..4016402) 1 NC_007954.1 short-chain dehydrogenase/reductase SDR 4016402 4019919 Sden_3371 Shewanella denitrificans OS217 short-chain dehydrogenase/reductase SDR YP_564370.1 4015683 R 318161 CDS YP_564371.1 91794720 4019920 complement(4016403..4016834) 1 NC_007954.1 hypothetical protein 4016834 4019920 Sden_3372 Shewanella denitrificans OS217 hypothetical protein YP_564371.1 4016403 R 318161 CDS YP_564372.1 91794721 4019921 complement(4017046..4017720) 1 NC_007954.1 anti-sigma factor ChrR 4017720 4019921 Sden_3373 Shewanella denitrificans OS217 anti-sigma factor ChrR YP_564372.1 4017046 R 318161 CDS YP_564373.1 91794722 4019922 complement(4017704..4018330) 1 NC_007954.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 4018330 4019922 Sden_3374 Shewanella denitrificans OS217 RNA polymerase sigma factor YP_564373.1 4017704 R 318161 CDS YP_564374.1 91794723 4019923 complement(4018412..4019110) 1 NC_007954.1 hypothetical protein 4019110 4019923 Sden_3375 Shewanella denitrificans OS217 hypothetical protein YP_564374.1 4018412 R 318161 CDS YP_564375.1 91794724 4019924 4019316..4020758 1 NC_007954.1 GGDEF domain-containing protein 4020758 4019924 Sden_3376 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564375.1 4019316 D 318161 CDS YP_564376.1 91794725 4019925 complement(4020846..4023443) 1 NC_007954.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 4023443 4019925 Sden_3377 Shewanella denitrificans OS217 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_564376.1 4020846 R 318161 CDS YP_564377.1 91794726 4019926 4023877..4024554 1 NC_007954.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 4024554 4019926 Sden_3378 Shewanella denitrificans OS217 2-deoxyglucose-6-phosphatase YP_564377.1 4023877 D 318161 CDS YP_564378.1 91794727 4019927 complement(4024965..4027178) 1 NC_007954.1 patatin 4027178 4019927 Sden_3379 Shewanella denitrificans OS217 patatin YP_564378.1 4024965 R 318161 CDS YP_564379.1 91794728 4019928 complement(4027364..4031803) 1 NC_007954.1 GGDEF domain-containing protein 4031803 4019928 Sden_3380 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564379.1 4027364 R 318161 CDS YP_564380.1 91794729 4019929 complement(4031969..4033399) 1 NC_007954.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4033399 4019929 Sden_3381 Shewanella denitrificans OS217 dihydrolipoamide dehydrogenase YP_564380.1 4031969 R 318161 CDS YP_564381.1 91794730 4019930 complement(4033637..4035535) 1 NC_007954.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 4035535 aceF 4019930 aceF Shewanella denitrificans OS217 dihydrolipoamide acetyltransferase YP_564381.1 4033637 R 318161 CDS YP_564382.1 91794731 4019931 complement(4035549..4038209) 1 NC_007954.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4038209 aceE 4019931 aceE Shewanella denitrificans OS217 pyruvate dehydrogenase subunit E1 YP_564382.1 4035549 R 318161 CDS YP_564383.1 91794732 4019932 complement(4038311..4039063) 1 NC_007954.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 4039063 pdhR 4019932 pdhR Shewanella denitrificans OS217 transcriptional regulator PdhR YP_564383.1 4038311 R 318161 CDS YP_564384.1 91794733 4019933 complement(4039404..4040387) 1 NC_007954.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 4040387 4019933 Sden_3385 Shewanella denitrificans OS217 regulatory protein AmpE YP_564384.1 4039404 R 318161 CDS YP_564385.1 91794734 4019934 complement(4040468..4041049) 1 NC_007954.1 N-acetyl-anhydromuranmyl-L-alanine amidase 4041049 4019934 Sden_3386 Shewanella denitrificans OS217 N-acetyl-anhydromuranmyl-L-alanine amidase YP_564385.1 4040468 R 318161 CDS YP_564386.1 91794735 4019935 4041393..4042268 1 NC_007954.1 nicotinate-nucleotide pyrophosphorylase 4042268 4019935 Sden_3387 Shewanella denitrificans OS217 nicotinate-nucleotide pyrophosphorylase YP_564386.1 4041393 D 318161 CDS YP_564387.1 91794736 4019936 4043125..4043541 1 NC_007954.1 methylation 4043541 4019936 Sden_3388 Shewanella denitrificans OS217 methylation YP_564387.1 4043125 D 318161 CDS YP_564388.1 91794737 4019937 4043609..4045318 1 NC_007954.1 type II secretion system protein E 4045318 4019937 Sden_3389 Shewanella denitrificans OS217 type II secretion system protein E YP_564388.1 4043609 D 318161 CDS YP_564389.1 91794738 4019938 4045495..4046763 1 NC_007954.1 type II secretion system protein 4046763 4019938 Sden_3390 Shewanella denitrificans OS217 type II secretion system protein YP_564389.1 4045495 D 318161 CDS YP_564390.1 91794739 4019939 4046921..4047838 1 NC_007954.1 prepilin peptidase 4047838 4019939 Sden_3391 Shewanella denitrificans OS217 prepilin peptidase YP_564390.1 4046921 D 318161 CDS YP_564391.1 91794740 4019940 4047838..4048458 1 NC_007954.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4048458 coaE 4019940 coaE Shewanella denitrificans OS217 dephospho-CoA kinase YP_564391.1 4047838 D 318161 CDS YP_564392.1 91794741 4019941 4048468..4049211 1 NC_007954.1 hypothetical protein 4049211 4019941 Sden_3393 Shewanella denitrificans OS217 hypothetical protein YP_564392.1 4048468 D 318161 CDS YP_564393.1 91794742 4019942 4049249..4049473 1 NC_007954.1 hypothetical protein 4049473 4019942 Sden_3394 Shewanella denitrificans OS217 hypothetical protein YP_564393.1 4049249 D 318161 CDS YP_564394.1 91794743 4019943 4049482..4049877 1 NC_007954.1 mutator mutT protein 4049877 4019943 Sden_3395 Shewanella denitrificans OS217 mutator mutT protein YP_564394.1 4049482 D 318161 CDS YP_564395.1 91794744 4019944 4050197..4052584 1 NC_007954.1 GGDEF domain-containing protein 4052584 4019944 Sden_3396 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564395.1 4050197 D 318161 CDS YP_564396.1 91794745 4019945 4052724..4053275 1 NC_007954.1 acetyltransferase 4053275 4019945 Sden_3397 Shewanella denitrificans OS217 acetyltransferase YP_564396.1 4052724 D 318161 CDS YP_564397.1 91794746 4019946 4053322..4054650 1 NC_007954.1 FAD dependent oxidoreductase 4054650 4019946 Sden_3398 Shewanella denitrificans OS217 FAD dependent oxidoreductase YP_564397.1 4053322 D 318161 CDS YP_564398.1 91794747 4019947 4055123..4056010 1 NC_007954.1 transposase, IS4 4056010 4019947 Sden_3399 Shewanella denitrificans OS217 transposase, IS4 YP_564398.1 4055123 D 318161 CDS YP_564399.1 91794748 4019948 complement(4056046..4056594) 1 NC_007954.1 hypothetical protein 4056594 4019948 Sden_3400 Shewanella denitrificans OS217 hypothetical protein YP_564399.1 4056046 R 318161 CDS YP_564400.1 91794749 4019949 complement(4056594..4057097) 1 NC_007954.1 hypothetical protein 4057097 4019949 Sden_3401 Shewanella denitrificans OS217 hypothetical protein YP_564400.1 4056594 R 318161 CDS YP_564401.1 91794750 4019950 complement(4057248..4057805) 1 NC_007954.1 hypothetical protein 4057805 4019950 Sden_3402 Shewanella denitrificans OS217 hypothetical protein YP_564401.1 4057248 R 318161 CDS YP_564402.1 91794751 4019952 4059468..4059893 1 NC_007954.1 transposase 4059893 4019952 Sden_3404 Shewanella denitrificans OS217 transposase YP_564402.1 4059468 D 318161 CDS YP_564403.1 91794752 4019953 complement(4060933..4062408) 1 NC_007954.1 Na+/H+ antiporter NhaC 4062408 4019953 Sden_3405 Shewanella denitrificans OS217 Na+/H+ antiporter NhaC YP_564403.1 4060933 R 318161 CDS YP_564404.1 91794753 4019954 complement(4062857..4064155) 1 NC_007954.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4064155 4019954 Sden_3406 Shewanella denitrificans OS217 phosphoribosylamine--glycine ligase YP_564404.1 4062857 R 318161 CDS YP_564405.1 91794754 4019955 complement(4064357..4065961) 1 NC_007954.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4065961 purH 4019955 purH Shewanella denitrificans OS217 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_564405.1 4064357 R 318161 CDS YP_564406.1 91794755 4019956 4066256..4066771 1 NC_007954.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 4066771 zntR 4019956 zntR Shewanella denitrificans OS217 zinc-responsive transcriptional regulator YP_564406.1 4066256 D 318161 CDS YP_564407.1 91794756 4019957 4066774..4068303 1 NC_007954.1 permease 4068303 4019957 Sden_3409 Shewanella denitrificans OS217 permease YP_564407.1 4066774 D 318161 CDS YP_564408.1 91794757 4019958 4069073..4069369 1 NC_007954.1 redox protein regulator of disulfide bond formation-like protein 4069369 4019958 Sden_3410 Shewanella denitrificans OS217 redox protein regulator of disulfide bond formation-like protein YP_564408.1 4069073 D 318161 CDS YP_564409.1 91794758 4019959 complement(4069289..4070842) 1 NC_007954.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4070842 4019959 Sden_3411 Shewanella denitrificans OS217 threonine dehydratase YP_564409.1 4069289 R 318161 CDS YP_564410.1 91794759 4019960 complement(4070844..4072703) 1 NC_007954.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4072703 4019960 Sden_3412 Shewanella denitrificans OS217 dihydroxy-acid dehydratase YP_564410.1 4070844 R 318161 CDS YP_564411.1 91794760 4019961 complement(4072804..4073085) 1 NC_007954.1 acetolactate synthase 2 regulatory subunit 4073085 ilvM 4019961 ilvM Shewanella denitrificans OS217 acetolactate synthase 2 regulatory subunit YP_564411.1 4072804 R 318161 CDS YP_564412.1 91794761 4019962 complement(4073082..4074755) 1 NC_007954.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4074755 4019962 Sden_3414 Shewanella denitrificans OS217 acetolactate synthase 2 catalytic subunit YP_564412.1 4073082 R 318161 CDS YP_564413.1 91794762 4019963 complement(4075136..4076614) 1 NC_007954.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4076614 4019963 Sden_3415 Shewanella denitrificans OS217 ketol-acid reductoisomerase YP_564413.1 4075136 R 318161 CDS YP_564414.1 91794763 4019964 4076858..4077739 1 NC_007954.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4077739 4019964 Sden_3416 Shewanella denitrificans OS217 DNA-binding transcriptional regulator IlvY YP_564414.1 4076858 D 318161 CDS YP_564415.1 91794764 4019965 complement(4077749..4079056) 1 NC_007954.1 hypothetical protein 4079056 4019965 Sden_3417 Shewanella denitrificans OS217 hypothetical protein YP_564415.1 4077749 R 318161 CDS YP_564416.1 91794765 4019966 complement(4079478..4079768) 1 NC_007954.1 hypothetical protein 4079768 4019966 Sden_3418 Shewanella denitrificans OS217 hypothetical protein YP_564416.1 4079478 R 318161 CDS YP_564417.1 91794766 4019967 complement(4079765..4080949) 1 NC_007954.1 KAP P-loop 4080949 4019967 Sden_3419 Shewanella denitrificans OS217 KAP P-loop YP_564417.1 4079765 R 318161 CDS YP_564418.1 91794767 4019968 complement(4081055..4082275) 1 NC_007954.1 hypothetical protein 4082275 4019968 Sden_3420 Shewanella denitrificans OS217 hypothetical protein YP_564418.1 4081055 R 318161 CDS YP_564419.1 91794768 4019969 4082799..4084319 1 NC_007954.1 Mg chelatase-related protein 4084319 4019969 Sden_3421 Shewanella denitrificans OS217 Mg chelatase-related protein YP_564419.1 4082799 D 318161 CDS YP_564420.1 91794769 4019970 4084396..4085295 1 NC_007954.1 acyltransferase 4085295 4019970 Sden_3422 Shewanella denitrificans OS217 acyltransferase YP_564420.1 4084396 D 318161 CDS YP_564421.1 91794770 4019971 4085301..4086242 1 NC_007954.1 acyltransferase 4086242 4019971 Sden_3423 Shewanella denitrificans OS217 acyltransferase YP_564421.1 4085301 D 318161 CDS YP_564422.1 91794771 4019972 4086333..4090841 1 NC_007954.1 GGDEF domain-containing protein 4090841 4019972 Sden_3424 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564422.1 4086333 D 318161 CDS YP_564423.1 91794772 4019973 4090848..4091558 1 NC_007954.1 hypothetical protein 4091558 4019973 Sden_3425 Shewanella denitrificans OS217 hypothetical protein YP_564423.1 4090848 D 318161 CDS YP_564424.1 91794773 4019974 4091634..4092443 1 NC_007954.1 hypothetical protein 4092443 4019974 Sden_3426 Shewanella denitrificans OS217 hypothetical protein YP_564424.1 4091634 D 318161 CDS YP_564425.1 91794774 4019975 complement(4092521..4093201) 1 NC_007954.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4093201 4019975 Sden_3427 Shewanella denitrificans OS217 nucleotidase YP_564425.1 4092521 R 318161 CDS YP_564426.1 91794775 4019976 complement(4093257..4094705) 1 NC_007954.1 major facilitator transporter 4094705 4019976 Sden_3428 Shewanella denitrificans OS217 major facilitator transporter YP_564426.1 4093257 R 318161 CDS YP_564427.1 91794776 4019977 complement(4095162..4096250) 1 NC_007954.1 secretion protein HlyD 4096250 4019977 Sden_3429 Shewanella denitrificans OS217 secretion protein HlyD YP_564427.1 4095162 R 318161 CDS YP_564428.1 91794777 4019978 complement(4096254..4099367) 1 NC_007954.1 acriflavin resistance protein 4099367 4019978 Sden_3430 Shewanella denitrificans OS217 acriflavin resistance protein YP_564428.1 4096254 R 318161 CDS YP_564429.1 91794778 4019979 complement(4099683..4100891) 1 NC_007954.1 aminoglycoside phosphotransferase 4100891 4019979 Sden_3431 Shewanella denitrificans OS217 aminoglycoside phosphotransferase YP_564429.1 4099683 R 318161 CDS YP_564430.1 91794779 4019980 complement(4100991..4102454) 1 NC_007954.1 hypothetical protein 4102454 4019980 Sden_3432 Shewanella denitrificans OS217 hypothetical protein YP_564430.1 4100991 R 318161 CDS YP_564431.1 91794780 4019981 4102682..4103305 1 NC_007954.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4103305 gmk 4019981 gmk Shewanella denitrificans OS217 guanylate kinase YP_564431.1 4102682 D 318161 CDS YP_564432.1 91794781 4019982 4103367..4103645 1 NC_007954.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4103645 rpoZ 4019982 rpoZ Shewanella denitrificans OS217 DNA-directed RNA polymerase subunit omega YP_564432.1 4103367 D 318161 CDS YP_564433.1 91794782 4019983 4103673..4105778 1 NC_007954.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4105778 4019983 Sden_3435 Shewanella denitrificans OS217 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_564433.1 4103673 D 318161 CDS YP_564434.1 91794783 4019984 4105824..4106207 1 NC_007954.1 YjgF-like protein 4106207 4019984 Sden_3436 Shewanella denitrificans OS217 YjgF-like protein YP_564434.1 4105824 D 318161 CDS YP_564435.1 91794784 4019985 4106540..4108207 1 NC_007954.1 AMP-dependent synthetase and ligase 4108207 4019985 Sden_3437 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_564435.1 4106540 D 318161 CDS YP_564436.1 91794785 4019986 4108357..4109289 1 NC_007954.1 K+-dependent Na+/Ca+ exchanger related-protein 4109289 4019986 Sden_3438 Shewanella denitrificans OS217 K+-dependent Na+/Ca+ exchanger related-protein YP_564436.1 4108357 D 318161 CDS YP_564437.1 91794786 4019987 complement(4109385..4111742) 1 NC_007954.1 hypothetical protein 4111742 4019987 Sden_3439 Shewanella denitrificans OS217 hypothetical protein YP_564437.1 4109385 R 318161 CDS YP_564438.1 91794787 4019988 complement(4111964..4112359) 1 NC_007954.1 hypothetical protein 4112359 4019988 Sden_3440 Shewanella denitrificans OS217 hypothetical protein YP_564438.1 4111964 R 318161 CDS YP_564439.1 91794788 4019989 4112463..4113731 1 NC_007954.1 hypothetical protein 4113731 4019989 Sden_3441 Shewanella denitrificans OS217 hypothetical protein YP_564439.1 4112463 D 318161 CDS YP_564440.1 91794789 4019990 4113939..4115591 1 NC_007954.1 hypothetical protein 4115591 4019990 Sden_3442 Shewanella denitrificans OS217 hypothetical protein YP_564440.1 4113939 D 318161 CDS YP_564441.1 91794790 4019991 complement(4115653..4116564) 1 NC_007954.1 hypothetical protein 4116564 4019991 Sden_3443 Shewanella denitrificans OS217 hypothetical protein YP_564441.1 4115653 R 318161 CDS YP_564442.1 91794791 4019992 complement(4116676..4117428) 1 NC_007954.1 cyclic nucleotide-binding 4117428 4019992 Sden_3444 Shewanella denitrificans OS217 cyclic nucleotide-binding YP_564442.1 4116676 R 318161 CDS YP_564443.1 91794792 4019993 4117736..4118752 1 NC_007954.1 transposase IS116/IS110/IS902 4118752 4019993 Sden_3445 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_564443.1 4117736 D 318161 CDS YP_564444.1 91794793 4020000 complement(4126009..4126587) 1 NC_007954.1 thioesterase 4126587 4020000 Sden_3446 Shewanella denitrificans OS217 thioesterase YP_564444.1 4126009 R 318161 CDS YP_564445.1 91794794 4020001 complement(4126617..4127054) 1 NC_007954.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4127054 4020001 Sden_3447 Shewanella denitrificans OS217 D-tyrosyl-tRNA(Tyr) deacylase YP_564445.1 4126617 R 318161 CDS YP_564446.1 91794795 4020002 complement(4127109..4128050) 1 NC_007954.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4128050 rbn 4020002 rbn Shewanella denitrificans OS217 ribonuclease BN YP_564446.1 4127109 R 318161 CDS YP_564447.1 91794796 4020003 4128145..4128372 1 NC_007954.1 hypothetical protein 4128372 4020003 Sden_3449 Shewanella denitrificans OS217 hypothetical protein YP_564447.1 4128145 D 318161 CDS YP_564448.1 91794797 4020004 4128389..4129036 1 NC_007954.1 hypothetical protein 4129036 4020004 Sden_3450 Shewanella denitrificans OS217 hypothetical protein YP_564448.1 4128389 D 318161 CDS YP_564449.1 91794798 4020005 4129251..4130432 1 NC_007954.1 hypothetical protein 4130432 4020005 Sden_3451 Shewanella denitrificans OS217 hypothetical protein YP_564449.1 4129251 D 318161 CDS YP_564450.1 91794799 4020006 4130429..4131574 1 NC_007954.1 aminotransferase, class V 4131574 4020006 Sden_3452 Shewanella denitrificans OS217 aminotransferase, class V YP_564450.1 4130429 D 318161 CDS YP_564451.1 91794800 4020007 complement(4131543..4132766) 1 NC_007954.1 sodium:dicarboxylate symporter 4132766 4020007 Sden_3453 Shewanella denitrificans OS217 sodium:dicarboxylate symporter YP_564451.1 4131543 R 318161 CDS YP_564452.1 91794801 4020008 complement(4133135..4134544) 1 NC_007954.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4134544 glnA 4020008 glnA Shewanella denitrificans OS217 glutamine synthetase YP_564452.1 4133135 R 318161 CDS YP_564453.1 91794802 4020009 4135179..4136990 1 NC_007954.1 GTP-binding protein TypA 4136990 4020009 Sden_3455 Shewanella denitrificans OS217 GTP-binding protein TypA YP_564453.1 4135179 D 318161 CDS YP_564454.1 91794803 4020010 4137147..4137701 1 NC_007954.1 hypothetical protein 4137701 4020010 Sden_3456 Shewanella denitrificans OS217 hypothetical protein YP_564454.1 4137147 D 318161 CDS YP_564455.1 91794804 4020011 4137880..4138917 1 NC_007954.1 ATP-binding region, ATPase-like protein 4138917 4020011 Sden_3457 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_564455.1 4137880 D 318161 CDS YP_564456.1 91794805 4020012 4138983..4140383 1 NC_007954.1 nitrogen regulation protein NR(I) 4140383 4020012 Sden_3458 Shewanella denitrificans OS217 nitrogen regulation protein NR(I) YP_564456.1 4138983 D 318161 CDS YP_564457.1 91794806 4020013 complement(4140425..4141312) 1 NC_007954.1 cation diffusion facilitator family transporter 4141312 4020013 Sden_3459 Shewanella denitrificans OS217 cation diffusion facilitator family transporter YP_564457.1 4140425 R 318161 CDS YP_564458.1 91794807 4020014 complement(4141375..4141920) 1 NC_007954.1 spheroplast protein y precursor 4141920 4020014 Sden_3460 Shewanella denitrificans OS217 spheroplast protein y precursor YP_564458.1 4141375 R 318161 CDS YP_564459.1 91794808 4020015 4142197..4142877 1 NC_007954.1 response regulator receiver 4142877 4020015 Sden_3461 Shewanella denitrificans OS217 response regulator receiver YP_564459.1 4142197 D 318161 CDS YP_564460.1 91794809 4020016 4142874..4144289 1 NC_007954.1 ATP-binding region, ATPase-like protein 4144289 4020016 Sden_3462 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_564460.1 4142874 D 318161 CDS YP_564461.1 91794810 4020017 4144328..4144660 1 NC_007954.1 hypothetical protein 4144660 4020017 Sden_3463 Shewanella denitrificans OS217 hypothetical protein YP_564461.1 4144328 D 318161 CDS YP_564462.1 91794811 4020018 complement(4145015..4148071) 1 NC_007954.1 cation/multidrug efflux pump-like protein 4148071 4020018 Sden_3464 Shewanella denitrificans OS217 cation/multidrug efflux pump-like protein YP_564462.1 4145015 R 318161 CDS YP_564463.1 91794812 4020019 complement(4148073..4148714) 1 NC_007954.1 hypothetical protein 4148714 4020019 Sden_3465 Shewanella denitrificans OS217 hypothetical protein YP_564463.1 4148073 R 318161 CDS YP_564464.1 91794813 4020020 complement(4148717..4149874) 1 NC_007954.1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4149874 4020020 Sden_3466 Shewanella denitrificans OS217 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_564464.1 4148717 R 318161 CDS YP_564465.1 91794814 4020021 complement(4150285..4151508) 1 NC_007954.1 hypothetical protein 4151508 4020021 Sden_3467 Shewanella denitrificans OS217 hypothetical protein YP_564465.1 4150285 R 318161 CDS YP_564466.1 91794815 4020022 complement(4151505..4152782) 1 NC_007954.1 hypothetical protein 4152782 4020022 Sden_3468 Shewanella denitrificans OS217 hypothetical protein YP_564466.1 4151505 R 318161 CDS YP_564467.1 91794816 4020023 complement(4152775..4154064) 1 NC_007954.1 hypothetical protein 4154064 4020023 Sden_3469 Shewanella denitrificans OS217 hypothetical protein YP_564467.1 4152775 R 318161 CDS YP_564468.1 91794817 4020024 complement(4154078..4154362) 1 NC_007954.1 ferredoxin 4154362 4020024 Sden_3470 Shewanella denitrificans OS217 ferredoxin YP_564468.1 4154078 R 318161 CDS YP_564469.1 91794818 4020025 complement(4154385..4155644) 1 NC_007954.1 major facilitator transporter 4155644 4020025 Sden_3471 Shewanella denitrificans OS217 major facilitator transporter YP_564469.1 4154385 R 318161 CDS YP_564470.1 91794819 4020026 complement(4155674..4156423) 1 NC_007954.1 hypothetical protein 4156423 4020026 Sden_3472 Shewanella denitrificans OS217 hypothetical protein YP_564470.1 4155674 R 318161 CDS YP_564471.1 91794820 4020027 4157388..4158197 1 NC_007954.1 TPR repeat-containing protein 4158197 4020027 Sden_3473 Shewanella denitrificans OS217 TPR repeat-containing protein YP_564471.1 4157388 D 318161 CDS YP_564472.1 91794821 4020028 4158500..4159564 1 NC_007954.1 histidine kinase, dimerisation and phosphoacceptor region 4159564 4020028 Sden_3474 Shewanella denitrificans OS217 histidine kinase, dimerisation and phosphoacceptor region YP_564472.1 4158500 D 318161 CDS YP_564473.1 91794822 4020029 4159561..4160184 1 NC_007954.1 response regulator receiver 4160184 4020029 Sden_3475 Shewanella denitrificans OS217 response regulator receiver YP_564473.1 4159561 D 318161 CDS YP_564474.1 91794823 4020030 4161629..4163704 1 NC_007954.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4163704 4020030 Sden_3476 Shewanella denitrificans OS217 ATP-dependent DNA helicase RecG YP_564474.1 4161629 D 318161 CDS YP_564475.1 91794824 4020031 4163852..4164778 1 NC_007954.1 hypothetical protein 4164778 4020031 Sden_3477 Shewanella denitrificans OS217 hypothetical protein YP_564475.1 4163852 D 318161 CDS YP_564476.1 91794825 4020032 complement(4164861..4165454) 1 NC_007954.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 4165454 4020032 Sden_3478 Shewanella denitrificans OS217 azoreductase YP_564476.1 4164861 R 318161 CDS YP_564477.1 91794826 4020033 complement(4165664..4166143) 1 NC_007954.1 hypothetical protein 4166143 4020033 Sden_3479 Shewanella denitrificans OS217 hypothetical protein YP_564477.1 4165664 R 318161 CDS YP_564478.1 91794827 4020034 complement(4166217..4166855) 1 NC_007954.1 electron transport protein SCO1/SenC 4166855 4020034 Sden_3480 Shewanella denitrificans OS217 electron transport protein SCO1/SenC YP_564478.1 4166217 R 318161 CDS YP_564479.1 91794828 4020035 complement(4166897..4167853) 1 NC_007954.1 hypothetical protein 4167853 4020035 Sden_3481 Shewanella denitrificans OS217 hypothetical protein YP_564479.1 4166897 R 318161 CDS YP_564480.1 91794829 4020036 complement(4167942..4169117) 1 NC_007954.1 nitrite reductase, copper containing 4169117 4020036 Sden_3482 Shewanella denitrificans OS217 nitrite reductase, copper containing YP_564480.1 4167942 R 318161 CDS YP_564481.1 91794830 4020037 complement(4169389..4170453) 1 NC_007954.1 WD-40 repeat-containing protein 4170453 4020037 Sden_3483 Shewanella denitrificans OS217 WD-40 repeat-containing protein YP_564481.1 4169389 R 318161 CDS YP_564482.1 91794831 4020038 4170591..4171052 1 NC_007954.1 RNA methyltransferase TrmH, group 2 4171052 4020038 Sden_3484 Shewanella denitrificans OS217 RNA methyltransferase TrmH, group 2 YP_564482.1 4170591 D 318161 CDS YP_564483.1 91794832 4020039 complement(4171187..4172695) 1 NC_007954.1 peptidase M16-like protein 4172695 4020039 Sden_3485 Shewanella denitrificans OS217 peptidase M16-like protein YP_564483.1 4171187 R 318161 CDS YP_564484.1 91794833 4020040 complement(4172695..4174020) 1 NC_007954.1 peptidase M16-like protein 4174020 4020040 Sden_3486 Shewanella denitrificans OS217 peptidase M16-like protein YP_564484.1 4172695 R 318161 CDS YP_564485.1 91794834 4020041 complement(4174220..4175527) 1 NC_007954.1 peptidase M20D, amidohydrolase 4175527 4020041 Sden_3487 Shewanella denitrificans OS217 peptidase M20D, amidohydrolase YP_564485.1 4174220 R 318161 CDS YP_564486.1 91794835 4020042 complement(4176396..4177181) 1 NC_007954.1 hypothetical protein 4177181 4020042 Sden_3488 Shewanella denitrificans OS217 hypothetical protein YP_564486.1 4176396 R 318161 CDS YP_564487.1 91794836 4020043 4177902..4178834 1 NC_007954.1 transposase, IS4 4178834 4020043 Sden_3489 Shewanella denitrificans OS217 transposase, IS4 YP_564487.1 4177902 D 318161 CDS YP_564488.1 91794837 4020044 4179902..4180213 1 NC_007954.1 glycine betaine/choline/proline transport system permease protein 4180213 4020044 Sden_3490 Shewanella denitrificans OS217 glycine betaine/choline/proline transport system permease protein YP_564488.1 4179902 D 318161 CDS YP_564489.1 91794838 4020045 4180210..4181061 1 NC_007954.1 integrase catalytic subunit 4181061 4020045 Sden_3491 Shewanella denitrificans OS217 integrase catalytic subunit YP_564489.1 4180210 D 318161 CDS YP_564490.1 91794839 4020046 complement(4181222..4181677) 1 NC_007954.1 hypothetical protein 4181677 4020046 Sden_3492 Shewanella denitrificans OS217 hypothetical protein YP_564490.1 4181222 R 318161 CDS YP_564491.1 91794840 4020047 complement(4181705..4182322) 1 NC_007954.1 hypothetical protein 4182322 4020047 Sden_3493 Shewanella denitrificans OS217 hypothetical protein YP_564491.1 4181705 R 318161 CDS YP_564492.1 91794841 4020048 complement(4182504..4183712) 1 NC_007954.1 Bcr/CflA subfamily drug resistance transporter 4183712 4020048 Sden_3494 Shewanella denitrificans OS217 Bcr/CflA subfamily drug resistance transporter YP_564492.1 4182504 R 318161 CDS YP_564493.1 91794842 4020049 4183825..4184793 1 NC_007954.1 regulatory protein, LysR 4184793 4020049 Sden_3495 Shewanella denitrificans OS217 regulatory protein, LysR YP_564493.1 4183825 D 318161 CDS YP_564494.1 91794843 4020050 4184992..4185285 1 NC_007954.1 hypothetical protein 4185285 4020050 Sden_3496 Shewanella denitrificans OS217 hypothetical protein YP_564494.1 4184992 D 318161 CDS YP_564495.1 91794844 4020051 complement(4185358..4186068) 1 NC_007954.1 hypothetical protein 4186068 4020051 Sden_3497 Shewanella denitrificans OS217 hypothetical protein YP_564495.1 4185358 R 318161 CDS YP_564496.1 91794845 4020052 4186320..4186898 1 NC_007954.1 hypothetical protein 4186898 4020052 Sden_3498 Shewanella denitrificans OS217 hypothetical protein YP_564496.1 4186320 D 318161 CDS YP_564497.1 91794846 4020053 4187040..4187489 1 NC_007954.1 hypothetical protein 4187489 4020053 Sden_3499 Shewanella denitrificans OS217 hypothetical protein YP_564497.1 4187040 D 318161 CDS YP_564498.1 91794847 4020054 complement(4187520..4188788) 1 NC_007954.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4188788 4020054 Sden_3500 Shewanella denitrificans OS217 inner membrane protein YjeH YP_564498.1 4187520 R 318161 CDS YP_564499.1 91794848 4020055 complement(4188974..4189798) 1 NC_007954.1 hypothetical protein 4189798 4020055 Sden_3501 Shewanella denitrificans OS217 hypothetical protein YP_564499.1 4188974 R 318161 CDS YP_564500.1 91794849 4020056 complement(4190065..4190919) 1 NC_007954.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4190919 4020056 Sden_3502 Shewanella denitrificans OS217 RNA polymerase factor sigma-32 YP_564500.1 4190065 R 318161 CDS YP_564501.1 91794850 4020057 complement(4191200..4192165) 1 NC_007954.1 hypothetical protein 4192165 4020057 Sden_3503 Shewanella denitrificans OS217 hypothetical protein YP_564501.1 4191200 R 318161 CDS YP_564502.1 91794851 4020058 complement(4192162..4192848) 1 NC_007954.1 ABC transporter related 4192848 4020058 Sden_3504 Shewanella denitrificans OS217 ABC transporter related YP_564502.1 4192162 R 318161 CDS YP_564503.1 91794852 4020059 complement(4192852..4194315) 1 NC_007954.1 signal recognition particle-docking protein FtsY 4194315 4020059 Sden_3505 Shewanella denitrificans OS217 signal recognition particle-docking protein FtsY YP_564503.1 4192852 R 318161 CDS YP_564504.1 91794853 4020060 4194549..4195124 1 NC_007954.1 hypothetical protein 4195124 4020060 Sden_3506 Shewanella denitrificans OS217 hypothetical protein YP_564504.1 4194549 D 318161 CDS YP_564505.1 91794854 4020061 4195422..4195907 1 NC_007954.1 hypothetical protein 4195907 4020061 Sden_3507 Shewanella denitrificans OS217 hypothetical protein YP_564505.1 4195422 D 318161 CDS YP_564506.1 91794855 4020062 4196019..4197401 1 NC_007954.1 secretion protein HlyD 4197401 4020062 Sden_3508 Shewanella denitrificans OS217 secretion protein HlyD YP_564506.1 4196019 D 318161 CDS YP_564507.1 91794856 4020063 4197413..4200541 1 NC_007954.1 heavy metal efflux pump CzcA 4200541 4020063 Sden_3509 Shewanella denitrificans OS217 heavy metal efflux pump CzcA YP_564507.1 4197413 D 318161 CDS YP_564508.1 91794857 4020064 complement(4200639..4200911) 1 NC_007954.1 hypothetical protein 4200911 4020064 Sden_3510 Shewanella denitrificans OS217 hypothetical protein YP_564508.1 4200639 R 318161 CDS YP_564509.1 91794858 4020065 complement(4200966..4201562) 1 NC_007954.1 glutathione S-transferase-like protein 4201562 4020065 Sden_3511 Shewanella denitrificans OS217 glutathione S-transferase-like protein YP_564509.1 4200966 R 318161 CDS YP_564510.1 91794859 4020066 complement(4201784..4202566) 1 NC_007954.1 glyoxalase/bleomycin resistance protein/dioxygenase 4202566 4020066 Sden_3512 Shewanella denitrificans OS217 glyoxalase/bleomycin resistance protein/dioxygenase YP_564510.1 4201784 R 318161 CDS YP_564511.1 91794860 4020067 complement(4202672..4203925) 1 NC_007954.1 aromatic amino acid transport protein 4203925 4020067 Sden_3513 Shewanella denitrificans OS217 aromatic amino acid transport protein YP_564511.1 4202672 R 318161 CDS YP_564512.1 91794861 4020068 complement(4203925..4206348) 1 NC_007954.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4206348 4020068 Sden_3514 Shewanella denitrificans OS217 glycerol-3-phosphate acyltransferase YP_564512.1 4203925 R 318161 CDS YP_564513.1 91794862 4020069 4206652..4207269 1 NC_007954.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4207269 4020069 Sden_3515 Shewanella denitrificans OS217 LexA repressor YP_564513.1 4206652 D 318161 CDS YP_564514.1 91794863 4020070 4207266..4207772 1 NC_007954.1 hypothetical protein 4207772 4020070 Sden_3516 Shewanella denitrificans OS217 hypothetical protein YP_564514.1 4207266 D 318161 CDS YP_564515.1 91794864 4020071 4208164..4209699 1 NC_007954.1 cytochrome c oxidase, subunit II 4209699 4020071 Sden_3517 Shewanella denitrificans OS217 cytochrome c oxidase, subunit II YP_564515.1 4208164 D 318161 CDS YP_564516.1 91794865 4020072 4209709..4211316 1 NC_007954.1 cytochrome-c oxidase 4211316 4020072 Sden_3518 Shewanella denitrificans OS217 cytochrome-c oxidase YP_564516.1 4209709 D 318161 CDS YP_564517.1 91794866 4020073 4211318..4211881 1 NC_007954.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4211881 4020073 Sden_3519 Shewanella denitrificans OS217 cytochrome C oxidase assembly protein YP_564517.1 4211318 D 318161 CDS YP_564518.1 91794867 4020074 4211878..4212753 1 NC_007954.1 cytochrome c oxidase, subunit III 4212753 4020074 Sden_3520 Shewanella denitrificans OS217 cytochrome c oxidase, subunit III YP_564518.1 4211878 D 318161 CDS YP_564519.1 91794868 4020075 4212975..4213766 1 NC_007954.1 hypothetical protein 4213766 4020075 Sden_3521 Shewanella denitrificans OS217 hypothetical protein YP_564519.1 4212975 D 318161 CDS YP_564520.1 91794869 4020076 4213794..4214384 1 NC_007954.1 hypothetical protein 4214384 4020076 Sden_3522 Shewanella denitrificans OS217 hypothetical protein YP_564520.1 4213794 D 318161 CDS YP_564521.1 91794870 4020077 4214384..4215364 1 NC_007954.1 cytochrome oxidase assembly 4215364 4020077 Sden_3523 Shewanella denitrificans OS217 cytochrome oxidase assembly YP_564521.1 4214384 D 318161 CDS YP_564522.1 91794871 4020078 4215378..4216283 1 NC_007954.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4216283 4020078 Sden_3524 Shewanella denitrificans OS217 protoheme IX farnesyltransferase YP_564522.1 4215378 D 318161 CDS YP_564523.1 91794872 4020079 4216288..4216941 1 NC_007954.1 electron transport protein SCO1/SenC 4216941 4020079 Sden_3525 Shewanella denitrificans OS217 electron transport protein SCO1/SenC YP_564523.1 4216288 D 318161 CDS YP_564524.1 91794873 4020080 complement(4217129..4218871) 1 NC_007954.1 KAP P-loop 4218871 4020080 Sden_3526 Shewanella denitrificans OS217 KAP P-loop YP_564524.1 4217129 R 318161 CDS YP_564525.1 91794874 4020081 4219735..4221045 1 NC_007954.1 MATE efflux family protein 4221045 4020081 Sden_3527 Shewanella denitrificans OS217 MATE efflux family protein YP_564525.1 4219735 D 318161 CDS YP_564526.1 91794875 4020082 complement(4221140..4221718) 1 NC_007954.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 4221718 4020082 Sden_3528 Shewanella denitrificans OS217 DNA uptake protein YP_564526.1 4221140 R 318161 CDS YP_564527.1 91794876 4020083 complement(4221853..4222734) 1 NC_007954.1 competence protein ComF 4222734 4020083 Sden_3529 Shewanella denitrificans OS217 competence protein ComF YP_564527.1 4221853 R 318161 CDS YP_564528.1 91794877 4020084 4222778..4223560 1 NC_007954.1 bioH protein 4223560 4020084 Sden_3530 Shewanella denitrificans OS217 bioH protein YP_564528.1 4222778 D 318161 CDS YP_564529.1 91794878 4020085 4223753..4224157 1 NC_007954.1 hypothetical protein 4224157 4020085 Sden_3531 Shewanella denitrificans OS217 hypothetical protein YP_564529.1 4223753 D 318161 CDS YP_564530.1 91794879 4020086 4225156..4236312 1 NC_007954.1 amino acid adenylation 4236312 4020086 Sden_3532 Shewanella denitrificans OS217 amino acid adenylation YP_564530.1 4225156 D 318161 CDS YP_564531.1 91794880 4020087 4236322..4238187 1 NC_007954.1 asparagine synthase, glutamine-hydrolyzing 4238187 4020087 Sden_3533 Shewanella denitrificans OS217 asparagine synthase, glutamine-hydrolyzing YP_564531.1 4236322 D 318161 CDS YP_564532.1 91794881 4020088 4238234..4245607 1 NC_007954.1 amino acid adenylation 4245607 4020088 Sden_3534 Shewanella denitrificans OS217 amino acid adenylation YP_564532.1 4238234 D 318161 CDS YP_564533.1 91794882 4020089 4245839..4246939 1 NC_007954.1 major facilitator transporter 4246939 4020089 Sden_3535 Shewanella denitrificans OS217 major facilitator transporter YP_564533.1 4245839 D 318161 CDS YP_564534.1 91794883 4020090 complement(4247162..4248382) 1 NC_007954.1 lipoprotein 4248382 4020090 Sden_3536 Shewanella denitrificans OS217 lipoprotein YP_564534.1 4247162 R 318161 CDS YP_564535.1 91794884 4020091 complement(4248700..4249167) 1 NC_007954.1 hypothetical protein 4249167 4020091 Sden_3537 Shewanella denitrificans OS217 hypothetical protein YP_564535.1 4248700 R 318161 CDS YP_564536.1 91794885 4020092 4249487..4250209 1 NC_007954.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4250209 ompR 4020092 ompR Shewanella denitrificans OS217 osmolarity response regulator YP_564536.1 4249487 D 318161 CDS YP_564537.1 91794886 4020093 4250232..4251548 1 NC_007954.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4251548 envZ 4020093 envZ Shewanella denitrificans OS217 osmolarity sensor protein YP_564537.1 4250232 D 318161 CDS YP_564538.1 91794887 4020094 4251760..4253766 1 NC_007954.1 chemotaxis sensory transducer 4253766 4020094 Sden_3540 Shewanella denitrificans OS217 chemotaxis sensory transducer YP_564538.1 4251760 D 318161 CDS YP_564539.1 91794888 4020095 complement(4253868..4254341) 1 NC_007954.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 4254341 4020095 Sden_3541 Shewanella denitrificans OS217 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_564539.1 4253868 R 318161 CDS YP_564540.1 91794889 4020096 complement(4254538..4255029) 1 NC_007954.1 orphan protein 4255029 4020096 Sden_3542 Shewanella denitrificans OS217 orphan protein YP_564540.1 4254538 R 318161 CDS YP_564541.1 91794890 4020097 complement(4255095..4256039) 1 NC_007954.1 copper resistance D 4256039 4020097 Sden_3543 Shewanella denitrificans OS217 copper resistance D YP_564541.1 4255095 R 318161 CDS YP_564542.1 91794891 4020098 complement(4256057..4256506) 1 NC_007954.1 copper resistance protein CopC 4256506 4020098 Sden_3544 Shewanella denitrificans OS217 copper resistance protein CopC YP_564542.1 4256057 R 318161 CDS YP_564543.1 91794892 4020099 complement(4256571..4257284) 1 NC_007954.1 copper resistance B precursor 4257284 4020099 Sden_3545 Shewanella denitrificans OS217 copper resistance B precursor YP_564543.1 4256571 R 318161 CDS YP_564544.1 91794893 4020100 complement(4257296..4259290) 1 NC_007954.1 copper-resistance protein CopA 4259290 4020100 Sden_3546 Shewanella denitrificans OS217 copper-resistance protein CopA YP_564544.1 4257296 R 318161 CDS YP_564545.1 91794894 4020101 complement(4259287..4259865) 1 NC_007954.1 hypothetical protein 4259865 4020101 Sden_3547 Shewanella denitrificans OS217 hypothetical protein YP_564545.1 4259287 R 318161 CDS YP_564546.1 91794895 4020102 complement(4260009..4260458) 1 NC_007954.1 hypothetical protein 4260458 4020102 Sden_3548 Shewanella denitrificans OS217 hypothetical protein YP_564546.1 4260009 R 318161 CDS YP_564547.1 91794896 4020103 4260601..4260840 1 NC_007954.1 hypothetical protein 4260840 4020103 Sden_3549 Shewanella denitrificans OS217 hypothetical protein YP_564547.1 4260601 D 318161 CDS YP_564548.1 91794897 4020104 complement(4260894..4262138) 1 NC_007954.1 major facilitator transporter 4262138 4020104 Sden_3550 Shewanella denitrificans OS217 major facilitator transporter YP_564548.1 4260894 R 318161 CDS YP_564549.1 91794898 4020105 complement(4262144..4263154) 1 NC_007954.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 4263154 4020105 Sden_3551 Shewanella denitrificans OS217 glyceraldehyde-3-phosphate dehydrogenase YP_564549.1 4262144 R 318161 CDS YP_564550.1 91794899 4020106 complement(4263253..4264170) 1 NC_007954.1 low molecular weight phosphotyrosine protein phosphatase 4264170 4020106 Sden_3552 Shewanella denitrificans OS217 low molecular weight phosphotyrosine protein phosphatase YP_564550.1 4263253 R 318161 CDS YP_564551.1 91794900 4020107 complement(4264400..4264660) 1 NC_007954.1 hypothetical protein 4264660 4020107 Sden_3553 Shewanella denitrificans OS217 hypothetical protein YP_564551.1 4264400 R 318161 CDS YP_564552.1 91794901 4020108 complement(4265130..4265897) 1 NC_007954.1 hypothetical protein 4265897 4020108 Sden_3554 Shewanella denitrificans OS217 hypothetical protein YP_564552.1 4265130 R 318161 CDS YP_564553.1 91794902 4020109 complement(4266579..4266794) 1 NC_007954.1 hypothetical protein 4266794 4020109 Sden_3555 Shewanella denitrificans OS217 hypothetical protein YP_564553.1 4266579 R 318161 CDS YP_564554.1 91794903 4020110 complement(4266834..4267292) 1 NC_007954.1 hypothetical protein 4267292 4020110 Sden_3556 Shewanella denitrificans OS217 hypothetical protein YP_564554.1 4266834 R 318161 CDS YP_564555.1 91794904 4020111 complement(4267348..4267812) 1 NC_007954.1 GCN5-related N-acetyltransferase 4267812 4020111 Sden_3557 Shewanella denitrificans OS217 GCN5-related N-acetyltransferase YP_564555.1 4267348 R 318161 CDS YP_564556.1 91794905 4020112 complement(4267937..4268548) 1 NC_007954.1 hypothetical protein 4268548 4020112 Sden_3558 Shewanella denitrificans OS217 hypothetical protein YP_564556.1 4267937 R 318161 CDS YP_564557.1 91794906 4020113 complement(4268586..4269242) 1 NC_007954.1 hypothetical protein 4269242 4020113 Sden_3559 Shewanella denitrificans OS217 hypothetical protein YP_564557.1 4268586 R 318161 CDS YP_564558.1 91794907 4020114 complement(4269412..4269735) 1 NC_007954.1 hypothetical protein 4269735 4020114 Sden_3560 Shewanella denitrificans OS217 hypothetical protein YP_564558.1 4269412 R 318161 CDS YP_564559.1 91794908 4020115 4269907..4270401 1 NC_007954.1 hypothetical protein 4270401 4020115 Sden_3561 Shewanella denitrificans OS217 hypothetical protein YP_564559.1 4269907 D 318161 CDS YP_564560.1 91794909 4020116 complement(4270430..4272478) 1 NC_007954.1 sulfatase 4272478 4020116 Sden_3562 Shewanella denitrificans OS217 sulfatase YP_564560.1 4270430 R 318161 CDS YP_564561.1 91794910 4020117 4272993..4273199 1 NC_007954.1 hypothetical protein 4273199 4020117 Sden_3563 Shewanella denitrificans OS217 hypothetical protein YP_564561.1 4272993 D 318161 CDS YP_564562.1 91794911 4020121 complement(4280078..4280557) 1 NC_007954.1 cytochrome C biogenesis protein 4280557 4020121 Sden_3564 Shewanella denitrificans OS217 cytochrome C biogenesis protein YP_564562.1 4280078 R 318161 CDS YP_564563.1 91794912 4020122 complement(4280558..4281112) 1 NC_007954.1 periplasmic protein thiol 4281112 4020122 Sden_3565 Shewanella denitrificans OS217 periplasmic protein thiol YP_564563.1 4280558 R 318161 CDS YP_564564.1 91794913 4020123 complement(4281123..4283105) 1 NC_007954.1 cytochrome c-type biogenesis protein CcmF 4283105 4020123 Sden_3566 Shewanella denitrificans OS217 cytochrome c-type biogenesis protein CcmF YP_564564.1 4281123 R 318161 CDS YP_564565.1 91794914 4020124 4283477..4284688 1 NC_007954.1 tetratricopeptide region 4284688 4020124 Sden_3567 Shewanella denitrificans OS217 tetratricopeptide region YP_564565.1 4283477 D 318161 CDS YP_564566.1 91794915 4020125 complement(4284769..4285062) 1 NC_007954.1 cytochrome c, class I 4285062 4020125 Sden_3568 Shewanella denitrificans OS217 cytochrome c, class I YP_564566.1 4284769 R 318161 CDS YP_564567.1 91794916 4020126 4285358..4286041 1 NC_007954.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4286041 4020126 Sden_3569 Shewanella denitrificans OS217 cytochrome c biogenesis protein CcmA YP_564567.1 4285358 D 318161 CDS YP_564568.1 91794917 4020127 4286050..4286736 1 NC_007954.1 heme exporter protein CcmB 4286736 4020127 Sden_3570 Shewanella denitrificans OS217 heme exporter protein CcmB YP_564568.1 4286050 D 318161 CDS YP_564569.1 91794918 4020128 4286738..4287484 1 NC_007954.1 heme exporter protein CcmC 4287484 4020128 Sden_3571 Shewanella denitrificans OS217 heme exporter protein CcmC YP_564569.1 4286738 D 318161 CDS YP_564570.1 91794919 4020129 4287484..4287693 1 NC_007954.1 Heme exporter protein D (CcmD) 4287693 4020129 Sden_3572 Shewanella denitrificans OS217 Heme exporter protein D (CcmD) YP_564570.1 4287484 D 318161 CDS YP_564571.1 91794920 4020130 4287696..4288187 1 NC_007954.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4288187 4020130 Sden_3573 Shewanella denitrificans OS217 cytochrome c-type biogenesis protein CcmE YP_564571.1 4287696 D 318161 CDS YP_564572.1 91794921 4020131 complement(4289496..4290104) 1 NC_007954.1 hypothetical protein 4290104 4020131 Sden_3574 Shewanella denitrificans OS217 hypothetical protein YP_564572.1 4289496 R 318161 CDS YP_564573.1 91794922 4020132 complement(4290118..4290807) 1 NC_007954.1 hypothetical protein 4290807 4020132 Sden_3575 Shewanella denitrificans OS217 hypothetical protein YP_564573.1 4290118 R 318161 CDS YP_564574.1 91794923 4020133 4291252..4291785 1 NC_007954.1 hypothetical protein 4291785 4020133 Sden_3576 Shewanella denitrificans OS217 hypothetical protein YP_564574.1 4291252 D 318161 CDS YP_564575.1 91794924 4020134 4291876..4292364 1 NC_007954.1 hypothetical protein 4292364 4020134 Sden_3577 Shewanella denitrificans OS217 hypothetical protein YP_564575.1 4291876 D 318161 CDS YP_564576.1 91794925 4020135 4292366..4293529 1 NC_007954.1 hypothetical protein 4293529 4020135 Sden_3578 Shewanella denitrificans OS217 hypothetical protein YP_564576.1 4292366 D 318161 CDS YP_564577.1 91794926 4020136 4293532..4294182 1 NC_007954.1 hypothetical protein 4294182 4020136 Sden_3579 Shewanella denitrificans OS217 hypothetical protein YP_564577.1 4293532 D 318161 CDS YP_564578.1 91794927 4020137 complement(4294280..4295320) 1 NC_007954.1 integrase catalytic subunit 4295320 4020137 Sden_3580 Shewanella denitrificans OS217 integrase catalytic subunit YP_564578.1 4294280 R 318161 CDS YP_564579.1 91794928 4020138 complement(4295495..4296355) 1 NC_007954.1 hypothetical protein 4296355 4020138 Sden_3581 Shewanella denitrificans OS217 hypothetical protein YP_564579.1 4295495 R 318161 CDS YP_564580.1 91794929 4020139 complement(4296412..4296669) 1 NC_007954.1 hypothetical protein 4296669 4020139 Sden_3582 Shewanella denitrificans OS217 hypothetical protein YP_564580.1 4296412 R 318161 CDS YP_564581.1 91794930 4020140 complement(4296858..4297118) 1 NC_007954.1 hypothetical protein 4297118 4020140 Sden_3583 Shewanella denitrificans OS217 hypothetical protein YP_564581.1 4296858 R 318161 CDS YP_564582.1 91794931 4020141 complement(4297233..4297673) 1 NC_007954.1 hypothetical protein 4297673 4020141 Sden_3584 Shewanella denitrificans OS217 hypothetical protein YP_564582.1 4297233 R 318161 CDS YP_564583.1 91794932 4020142 complement(4297670..4298539) 1 NC_007954.1 hypothetical protein 4298539 4020142 Sden_3585 Shewanella denitrificans OS217 hypothetical protein YP_564583.1 4297670 R 318161 CDS YP_564584.1 91794933 4020143 complement(4298552..4299793) 1 NC_007954.1 hypothetical protein 4299793 4020143 Sden_3586 Shewanella denitrificans OS217 hypothetical protein YP_564584.1 4298552 R 318161 CDS YP_564585.1 91794934 4020144 complement(4299801..4301528) 1 NC_007954.1 hypothetical protein 4301528 4020144 Sden_3587 Shewanella denitrificans OS217 hypothetical protein YP_564585.1 4299801 R 318161 CDS YP_564586.1 91794935 4020145 complement(4301503..4302066) 1 NC_007954.1 phage integrase 4302066 4020145 Sden_3588 Shewanella denitrificans OS217 phage integrase YP_564586.1 4301503 R 318161 CDS YP_564587.1 91794936 4020146 complement(4302091..4303032) 1 NC_007954.1 integrase catalytic subunit 4303032 4020146 Sden_3589 Shewanella denitrificans OS217 integrase catalytic subunit YP_564587.1 4302091 R 318161 CDS YP_564588.1 91794937 4020147 complement(4303092..4303952) 1 NC_007954.1 transposase 4303952 4020147 Sden_3590 Shewanella denitrificans OS217 transposase YP_564588.1 4303092 R 318161 CDS YP_564589.1 91794938 4020148 complement(4304131..4305579) 1 NC_007954.1 hypothetical protein 4305579 4020148 Sden_3591 Shewanella denitrificans OS217 hypothetical protein YP_564589.1 4304131 R 318161 CDS YP_564590.1 91794939 4020149 complement(4305944..4307302) 1 NC_007954.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4307302 4020149 Sden_3592 Shewanella denitrificans OS217 glutathione reductase YP_564590.1 4305944 R 318161 CDS YP_564591.1 91794940 4020150 complement(4307513..4308082) 1 NC_007954.1 hypothetical protein 4308082 4020150 Sden_3593 Shewanella denitrificans OS217 hypothetical protein YP_564591.1 4307513 R 318161 CDS YP_564592.1 91794941 4020151 complement(4308247..4308987) 1 NC_007954.1 hypothetical protein 4308987 4020151 Sden_3594 Shewanella denitrificans OS217 hypothetical protein YP_564592.1 4308247 R 318161 CDS YP_564593.1 91794942 4020152 4309481..4311520 1 NC_007954.1 oligopeptidase A 4311520 4020152 Sden_3595 Shewanella denitrificans OS217 oligopeptidase A YP_564593.1 4309481 D 318161 CDS YP_564594.1 91794943 4020153 4311822..4312484 1 NC_007954.1 type IV pilus assembly PilZ 4312484 4020153 Sden_3596 Shewanella denitrificans OS217 type IV pilus assembly PilZ YP_564594.1 4311822 D 318161 CDS YP_564595.1 91794944 4020154 4312602..4313183 1 NC_007954.1 hypothetical protein 4313183 4020154 Sden_3597 Shewanella denitrificans OS217 hypothetical protein YP_564595.1 4312602 D 318161 CDS YP_564596.1 91794945 4020155 4313183..4313416 1 NC_007954.1 helix-turn-helix type 3 4313416 4020155 Sden_3598 Shewanella denitrificans OS217 helix-turn-helix type 3 YP_564596.1 4313183 D 318161 CDS YP_564597.1 91794946 4020156 4313467..4314312 1 NC_007954.1 hypothetical protein 4314312 4020156 Sden_3599 Shewanella denitrificans OS217 hypothetical protein YP_564597.1 4313467 D 318161 CDS YP_564598.1 91794947 4020157 4314453..4314983 1 NC_007954.1 hypothetical protein 4314983 4020157 Sden_3600 Shewanella denitrificans OS217 hypothetical protein YP_564598.1 4314453 D 318161 CDS YP_564599.1 91794948 4020158 4315314..4316474 1 NC_007954.1 secretion protein HlyD 4316474 4020158 Sden_3601 Shewanella denitrificans OS217 secretion protein HlyD YP_564599.1 4315314 D 318161 CDS YP_564600.1 91794949 4020159 4316539..4319679 1 NC_007954.1 hydrophobe/amphiphile efflux-1 HAE1 4319679 4020159 Sden_3602 Shewanella denitrificans OS217 hydrophobe/amphiphile efflux-1 HAE1 YP_564600.1 4316539 D 318161 CDS YP_564601.1 91794950 4020160 complement(4319763..4321475) 1 NC_007954.1 GGDEF domain-containing protein 4321475 4020160 Sden_3603 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564601.1 4319763 R 318161 CDS YP_564602.1 91794951 4020161 complement(4321503..4321937) 1 NC_007954.1 response regulator receiver 4321937 4020161 Sden_3604 Shewanella denitrificans OS217 response regulator receiver YP_564602.1 4321503 R 318161 CDS YP_564603.1 91794952 4020162 complement(4321930..4324551) 1 NC_007954.1 ATP-binding region, ATPase-like protein 4324551 4020162 Sden_3605 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_564603.1 4321930 R 318161 CDS YP_564604.1 91794953 4020163 4325015..4325545 1 NC_007954.1 hypothetical protein 4325545 4020163 Sden_3606 Shewanella denitrificans OS217 hypothetical protein YP_564604.1 4325015 D 318161 CDS YP_564605.1 91794954 4020164 4325592..4326572 1 NC_007954.1 lytic transglycosylase, catalytic 4326572 4020164 Sden_3607 Shewanella denitrificans OS217 lytic transglycosylase, catalytic YP_564605.1 4325592 D 318161 CDS YP_564606.1 91794955 4020165 4326556..4327974 1 NC_007954.1 peptidase M28 4327974 4020165 Sden_3608 Shewanella denitrificans OS217 peptidase M28 YP_564606.1 4326556 D 318161 CDS YP_564607.1 91794956 4020166 complement(4328066..4328944) 1 NC_007954.1 hypothetical protein 4328944 4020166 Sden_3609 Shewanella denitrificans OS217 hypothetical protein YP_564607.1 4328066 R 318161 CDS YP_564608.1 91794957 4020167 4329091..4329837 1 NC_007954.1 hypothetical protein 4329837 4020167 Sden_3610 Shewanella denitrificans OS217 hypothetical protein YP_564608.1 4329091 D 318161 CDS YP_564609.1 91794958 4020168 complement(4330139..4331185) 1 NC_007954.1 glycosyl transferase family protein 4331185 4020168 Sden_3611 Shewanella denitrificans OS217 glycosyl transferase family protein YP_564609.1 4330139 R 318161 CDS YP_564610.1 91794959 4020169 4331294..4332043 1 NC_007954.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4332043 4020169 Sden_3612 Shewanella denitrificans OS217 3-deoxy-D-manno-octulosonic-acid kinase YP_564610.1 4331294 D 318161 CDS YP_564611.1 91794960 4020170 complement(4332062..4333381) 1 NC_007954.1 three-deoxy-D-manno-octulosonic-acid transferase-like protein 4333381 4020170 Sden_3613 Shewanella denitrificans OS217 three-deoxy-D-manno-octulosonic-acid transferase-like protein YP_564611.1 4332062 R 318161 CDS YP_564612.1 91794961 4020171 4333664..4334311 1 NC_007954.1 regulatory protein, TetR 4334311 4020171 Sden_3614 Shewanella denitrificans OS217 regulatory protein, TetR YP_564612.1 4333664 D 318161 CDS YP_564613.1 91794962 4020172 4334489..4335682 1 NC_007954.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4335682 4020172 Sden_3615 Shewanella denitrificans OS217 2-amino-3-ketobutyrate coenzyme A ligase YP_564613.1 4334489 D 318161 CDS YP_564614.1 91794963 4020173 4335707..4336735 1 NC_007954.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4336735 tdh 4020173 tdh Shewanella denitrificans OS217 L-threonine 3-dehydrogenase YP_564614.1 4335707 D 318161 CDS YP_564615.1 91794964 4020174 4336827..4337135 1 NC_007954.1 rhodanese-like protein 4337135 4020174 Sden_3617 Shewanella denitrificans OS217 rhodanese-like protein YP_564615.1 4336827 D 318161 CDS YP_564616.1 91794965 4020175 4337132..4337974 1 NC_007954.1 rhomboid-like protein 4337974 4020175 Sden_3618 Shewanella denitrificans OS217 rhomboid-like protein YP_564616.1 4337132 D 318161 CDS YP_564617.1 91794966 4020176 complement(4338002..4338667) 1 NC_007954.1 isoprenoid biosynthesis protein with amidotransferase-like domain 4338667 4020176 Sden_3619 Shewanella denitrificans OS217 isoprenoid biosynthesis protein with amidotransferase-like domain YP_564617.1 4338002 R 318161 CDS YP_564618.1 91794967 4020177 4339054..4341819 1 NC_007954.1 DNA polymerase I 4341819 4020177 Sden_3620 Shewanella denitrificans OS217 DNA polymerase I YP_564618.1 4339054 D 318161 CDS YP_564619.1 91794968 4020178 complement(4342391..4343050) 1 NC_007954.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4343050 engB 4020178 engB Shewanella denitrificans OS217 ribosome biogenesis GTP-binding protein YsxC YP_564619.1 4342391 R 318161 CDS YP_564620.1 91794969 4020179 4343305..4343925 1 NC_007954.1 cytochrome c, class I 4343925 4020179 Sden_3622 Shewanella denitrificans OS217 cytochrome c, class I YP_564620.1 4343305 D 318161 CDS YP_564621.1 91794970 4020180 4344712..4345383 1 NC_007954.1 hypothetical protein 4345383 4020180 Sden_3623 Shewanella denitrificans OS217 hypothetical protein YP_564621.1 4344712 D 318161 CDS YP_564622.1 91794971 4020181 4345439..4345987 1 NC_007954.1 hypothetical protein 4345987 4020181 Sden_3624 Shewanella denitrificans OS217 hypothetical protein YP_564622.1 4345439 D 318161 CDS YP_564623.1 91794972 4020182 4346061..4346528 1 NC_007954.1 hypothetical protein 4346528 4020182 Sden_3625 Shewanella denitrificans OS217 hypothetical protein YP_564623.1 4346061 D 318161 CDS YP_564624.1 91794973 4020183 4346726..4348066 1 NC_007954.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4348066 4020183 Sden_3626 Shewanella denitrificans OS217 coproporphyrinogen III oxidase YP_564624.1 4346726 D 318161 CDS YP_564625.1 91794974 4020184 complement(4348154..4349149) 1 NC_007954.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 4349149 4020184 Sden_3627 Shewanella denitrificans OS217 adenosine deaminase YP_564625.1 4348154 R 318161 CDS YP_564626.1 91794975 4020185 4349346..4351145 1 NC_007954.1 hypothetical protein 4351145 4020185 Sden_3628 Shewanella denitrificans OS217 hypothetical protein YP_564626.1 4349346 D 318161 CDS YP_564627.1 91794976 4020186 complement(4351124..4351411) 1 NC_007954.1 hypothetical protein 4351411 4020186 Sden_3629 Shewanella denitrificans OS217 hypothetical protein YP_564627.1 4351124 R 318161 CDS YP_564628.1 91794977 4020187 complement(4351423..4351869) 1 NC_007954.1 type IV pilus assembly PilZ 4351869 4020187 Sden_3630 Shewanella denitrificans OS217 type IV pilus assembly PilZ YP_564628.1 4351423 R 318161 CDS YP_564629.1 91794978 4020188 complement(4351887..4352879) 1 NC_007954.1 OmpA/MotB 4352879 4020188 Sden_3631 Shewanella denitrificans OS217 OmpA/MotB YP_564629.1 4351887 R 318161 CDS YP_564630.1 91794979 4020189 complement(4352879..4353736) 1 NC_007954.1 MotA/TolQ/ExbB proton channel 4353736 4020189 Sden_3632 Shewanella denitrificans OS217 MotA/TolQ/ExbB proton channel YP_564630.1 4352879 R 318161 CDS YP_564631.1 91794980 4020190 complement(4353770..4354480) 1 NC_007954.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 4354480 fliA 4020190 fliA Shewanella denitrificans OS217 flagellar biosynthesis sigma factor YP_564631.1 4353770 R 318161 CDS YP_564632.1 91794981 4020191 complement(4354491..4354946) 1 NC_007954.1 flagellar basal body-associated protein FliL 4354946 4020191 Sden_3634 Shewanella denitrificans OS217 flagellar basal body-associated protein FliL YP_564632.1 4354491 R 318161 CDS YP_564633.1 91794982 4020192 complement(4354962..4356278) 1 NC_007954.1 flagellar hook-length control protein 4356278 4020192 Sden_3635 Shewanella denitrificans OS217 flagellar hook-length control protein YP_564633.1 4354962 R 318161 CDS YP_564634.1 91794983 4020193 complement(4356268..4356606) 1 NC_007954.1 hypothetical protein 4356606 4020193 Sden_3636 Shewanella denitrificans OS217 hypothetical protein YP_564634.1 4356268 R 318161 CDS YP_564635.1 91794984 4020194 complement(4356653..4357033) 1 NC_007954.1 flagellar protein FliS 4357033 4020194 Sden_3637 Shewanella denitrificans OS217 flagellar protein FliS YP_564635.1 4356653 R 318161 CDS YP_564636.1 91794985 4020195 complement(4357056..4358402) 1 NC_007954.1 flagellar hook-associated 2-like protein 4358402 4020195 Sden_3638 Shewanella denitrificans OS217 flagellar hook-associated 2-like protein YP_564636.1 4357056 R 318161 CDS YP_564637.1 91794986 4020196 complement(4358870..4359670) 1 NC_007954.1 flagellin-like protein 4359670 4020196 Sden_3639 Shewanella denitrificans OS217 flagellin-like protein YP_564637.1 4358870 R 318161 CDS YP_564638.1 91794987 4020197 complement(4359904..4360923) 1 NC_007954.1 hypothetical protein 4360923 4020197 Sden_3640 Shewanella denitrificans OS217 hypothetical protein YP_564638.1 4359904 R 318161 CDS YP_564639.1 91794988 4020198 complement(4360968..4361885) 1 NC_007954.1 flagellin-like protein 4361885 4020198 Sden_3641 Shewanella denitrificans OS217 flagellin-like protein YP_564639.1 4360968 R 318161 CDS YP_564640.1 91794989 4020199 complement(4361913..4363286) 1 NC_007954.1 flagellar hook-associated protein 4363286 4020199 Sden_3642 Shewanella denitrificans OS217 flagellar hook-associated protein YP_564640.1 4361913 R 318161 CDS YP_564641.1 91794990 4020200 complement(4363283..4363702) 1 NC_007954.1 FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase 4363702 flgJ 4020200 flgJ Shewanella denitrificans OS217 peptidoglycan hydrolase YP_564641.1 4363283 R 318161 CDS YP_564642.1 91794991 4020201 complement(4363702..4364817) 1 NC_007954.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4364817 flgI 4020201 flgI Shewanella denitrificans OS217 flagellar basal body P-ring protein YP_564642.1 4363702 R 318161 CDS YP_564643.1 91794992 4020202 complement(4364832..4365491) 1 NC_007954.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4365491 flgH 4020202 flgH Shewanella denitrificans OS217 flagellar basal body L-ring protein YP_564643.1 4364832 R 318161 CDS YP_564644.1 91794993 4020203 complement(4365503..4366288) 1 NC_007954.1 flagellar basal-body rod FlgG 4366288 4020203 Sden_3646 Shewanella denitrificans OS217 flagellar basal-body rod FlgG YP_564644.1 4365503 R 318161 CDS YP_564645.1 91794994 4020204 complement(4366300..4367034) 1 NC_007954.1 flagellar basal-body rod FlgF 4367034 4020204 Sden_3647 Shewanella denitrificans OS217 flagellar basal-body rod FlgF YP_564645.1 4366300 R 318161 CDS YP_564646.1 91794995 4020205 complement(4367046..4368254) 1 NC_007954.1 the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE 4368254 flgE 4020205 flgE Shewanella denitrificans OS217 flagellar hook protein FlgE YP_564646.1 4367046 R 318161 CDS YP_564647.1 91794996 4020206 complement(4368276..4368938) 1 NC_007954.1 flagellar hook capping protein 4368938 4020206 Sden_3649 Shewanella denitrificans OS217 flagellar hook capping protein YP_564647.1 4368276 R 318161 CDS YP_564648.1 91794997 4020207 complement(4368941..4369360) 1 NC_007954.1 flagellar basal-body rod protein FlgC 4369360 4020207 Sden_3650 Shewanella denitrificans OS217 flagellar basal-body rod protein FlgC YP_564648.1 4368941 R 318161 CDS YP_564649.1 91794998 4020208 complement(4369369..4369719) 1 NC_007954.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB 4369719 flgB 4020208 flgB Shewanella denitrificans OS217 flagellar basal body rod protein FlgB YP_564649.1 4369369 R 318161 CDS YP_564650.1 91794999 4020209 4369924..4370592 1 NC_007954.1 flageller protein FlgA 4370592 4020209 Sden_3652 Shewanella denitrificans OS217 flageller protein FlgA YP_564650.1 4369924 D 318161 CDS YP_564651.1 91795000 4020210 4370708..4370989 1 NC_007954.1 hypothetical protein 4370989 4020210 Sden_3653 Shewanella denitrificans OS217 hypothetical protein YP_564651.1 4370708 D 318161 CDS YP_564652.1 91795001 4020211 4370982..4371446 1 NC_007954.1 hypothetical protein 4371446 4020211 Sden_3654 Shewanella denitrificans OS217 hypothetical protein YP_564652.1 4370982 D 318161 CDS YP_564653.1 91795002 4020212 complement(4371611..4372033) 1 NC_007954.1 hypothetical protein 4372033 4020212 Sden_3655 Shewanella denitrificans OS217 hypothetical protein YP_564653.1 4371611 R 318161 CDS YP_564654.1 91795003 4020213 complement(4372011..4373348) 1 NC_007954.1 ATPase FliI/YscN 4373348 4020213 Sden_3656 Shewanella denitrificans OS217 ATPase FliI/YscN YP_564654.1 4372011 R 318161 CDS YP_564655.1 91795004 4020214 complement(4373338..4374045) 1 NC_007954.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 4374045 fliH 4020214 fliH Shewanella denitrificans OS217 flagellar assembly protein H YP_564655.1 4373338 R 318161 CDS YP_564656.1 91795005 4020215 complement(4374045..4375061) 1 NC_007954.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 4375061 fliG 4020215 fliG Shewanella denitrificans OS217 flagellar motor switch protein G YP_564656.1 4374045 R 318161 CDS YP_564657.1 91795006 4020216 complement(4375051..4376748) 1 NC_007954.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 4376748 fliF 4020216 fliF Shewanella denitrificans OS217 flagellar MS-ring protein YP_564657.1 4375051 R 318161 CDS YP_564658.1 91795007 4020217 complement(4376761..4377099) 1 NC_007954.1 flagellar hook-basal body complex protein (FliE) 4377099 4020217 Sden_3660 Shewanella denitrificans OS217 flagellar hook-basal body complex protein (FliE) YP_564658.1 4376761 R 318161 CDS YP_564659.1 91795008 4020218 complement(4377148..4378452) 1 NC_007954.1 sigma-54 factor, interaction region 4378452 4020218 Sden_3661 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_564659.1 4377148 R 318161 CDS YP_564660.1 91795009 4020219 4379304..4380185 1 NC_007954.1 hypothetical protein 4380185 4020219 Sden_3662 Shewanella denitrificans OS217 hypothetical protein YP_564660.1 4379304 D 318161 CDS YP_564661.1 91795010 4020220 4380163..4380531 1 NC_007954.1 surface presentation of antigens (SPOA) protein 4380531 4020220 Sden_3663 Shewanella denitrificans OS217 surface presentation of antigens (SPOA) protein YP_564661.1 4380163 D 318161 CDS YP_564662.1 91795011 4020221 4380531..4381262 1 NC_007954.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4381262 fliP 4020221 fliP Shewanella denitrificans OS217 flagellar biosynthesis protein FliP YP_564662.1 4380531 D 318161 CDS YP_564663.1 91795012 4020222 4381268..4381537 1 NC_007954.1 export protein FliQ 4381537 4020222 Sden_3665 Shewanella denitrificans OS217 export protein FliQ YP_564663.1 4381268 D 318161 CDS YP_564664.1 91795013 4020223 4381539..4382318 1 NC_007954.1 flagellar biosynthetic protein FliR 4382318 4020223 Sden_3666 Shewanella denitrificans OS217 flagellar biosynthetic protein FliR YP_564664.1 4381539 D 318161 CDS YP_564665.1 91795014 4020224 4382315..4383445 1 NC_007954.1 flagellar biosynthetic protein FlhB 4383445 4020224 Sden_3667 Shewanella denitrificans OS217 flagellar biosynthetic protein FlhB YP_564665.1 4382315 D 318161 CDS YP_564666.1 91795015 4020225 4383459..4385540 1 NC_007954.1 flagellar biosynthesis protein FlhA 4385540 4020225 Sden_3668 Shewanella denitrificans OS217 flagellar biosynthesis protein FlhA YP_564666.1 4383459 D 318161 CDS YP_564667.1 91795016 4020226 4385575..4386564 1 NC_007954.1 alpha/beta hydrolase fold 4386564 4020226 Sden_3669 Shewanella denitrificans OS217 alpha/beta hydrolase fold YP_564667.1 4385575 D 318161 CDS YP_564668.1 91795017 4020227 complement(4386539..4388941) 1 NC_007954.1 GGDEF domain-containing protein 4388941 4020227 Sden_3670 Shewanella denitrificans OS217 GGDEF domain-containing protein YP_564668.1 4386539 R 318161 CDS YP_564669.1 91795018 4020228 4389310..4391052 1 NC_007954.1 peptidase S8/S53 subtilisin kexin sedolisin 4391052 4020228 Sden_3671 Shewanella denitrificans OS217 peptidase S8/S53 subtilisin kexin sedolisin YP_564669.1 4389310 D 318161 CDS YP_564670.1 91795019 4020229 complement(4391290..4392015) 1 NC_007954.1 hypothetical protein 4392015 4020229 Sden_3672 Shewanella denitrificans OS217 hypothetical protein YP_564670.1 4391290 R 318161 CDS YP_564671.1 91795020 4020230 complement(4392559..4393149) 1 NC_007954.1 hypothetical protein 4393149 4020230 Sden_3673 Shewanella denitrificans OS217 hypothetical protein YP_564671.1 4392559 R 318161 CDS YP_564672.1 91795021 4020231 complement(4393158..4393742) 1 NC_007954.1 hypothetical protein 4393742 4020231 Sden_3674 Shewanella denitrificans OS217 hypothetical protein YP_564672.1 4393158 R 318161 CDS YP_564673.1 91795022 4020232 4393759..4394190 1 NC_007954.1 hypothetical protein 4394190 4020232 Sden_3675 Shewanella denitrificans OS217 hypothetical protein YP_564673.1 4393759 D 318161 CDS YP_564674.1 91795023 4020235 complement(4397123..4397329) 1 NC_007954.1 hypothetical protein 4397329 4020235 Sden_3678 Shewanella denitrificans OS217 hypothetical protein YP_564674.1 4397123 R 318161 CDS YP_564675.1 91795024 4020236 complement(4397555..4397860) 1 NC_007954.1 hypothetical protein 4397860 4020236 Sden_3679 Shewanella denitrificans OS217 hypothetical protein YP_564675.1 4397555 R 318161 CDS YP_564676.1 91795025 4020237 complement(4397836..4398813) 1 NC_007954.1 hypothetical protein 4398813 4020237 Sden_3680 Shewanella denitrificans OS217 hypothetical protein YP_564676.1 4397836 R 318161 CDS YP_564677.1 91795026 4020238 4398882..4399583 1 NC_007954.1 transposase IS116/IS110/IS902 4399583 4020238 Sden_3681 Shewanella denitrificans OS217 transposase IS116/IS110/IS902 YP_564677.1 4398882 D 318161 CDS YP_564678.1 91795027 4020239 complement(4400059..4400649) 1 NC_007954.1 hypothetical protein 4400649 4020239 Sden_3682 Shewanella denitrificans OS217 hypothetical protein YP_564678.1 4400059 R 318161 CDS YP_564679.1 91795028 4020240 complement(4400658..4416368) 1 NC_007954.1 peptidoglycan-binding LysM 4416368 4020240 Sden_3683 Shewanella denitrificans OS217 peptidoglycan-binding LysM YP_564679.1 4400658 R 318161 CDS YP_564680.1 91795029 4020241 complement(4416453..4417859) 1 NC_007954.1 triple helix repeat-containing collagen 4417859 4020241 Sden_3684 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_564680.1 4416453 R 318161 CDS YP_564681.1 91795030 4020242 complement(4417856..4419337) 1 NC_007954.1 triple helix repeat-containing collagen 4419337 4020242 Sden_3685 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_564681.1 4417856 R 318161 CDS YP_564682.1 91795031 4020243 complement(4419337..4421100) 1 NC_007954.1 triple helix repeat-containing collagen 4421100 4020243 Sden_3686 Shewanella denitrificans OS217 triple helix repeat-containing collagen YP_564682.1 4419337 R 318161 CDS YP_564683.1 91795032 4020244 complement(4421209..4422354) 1 NC_007954.1 tetratricopeptide TPR_2 4422354 4020244 Sden_3687 Shewanella denitrificans OS217 tetratricopeptide TPR_2 YP_564683.1 4421209 R 318161 CDS YP_564684.1 91795033 4020245 complement(4422792..4423325) 1 NC_007954.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 4423325 mogA 4020245 mogA Shewanella denitrificans OS217 molybdenum cofactor biosynthesis protein MogA YP_564684.1 4422792 R 318161 CDS YP_564685.1 91795034 4020246 complement(4423415..4423954) 1 NC_007954.1 NLP/P60 family lipoprotein 4423954 4020246 Sden_3689 Shewanella denitrificans OS217 NLP/P60 family lipoprotein YP_564685.1 4423415 R 318161 CDS YP_564686.1 91795035 4020247 complement(4424145..4424576) 1 NC_007954.1 regulatory protein, MerR 4424576 4020247 Sden_3690 Shewanella denitrificans OS217 regulatory protein, MerR YP_564686.1 4424145 R 318161 CDS YP_564687.1 91795036 4020248 complement(4424576..4426957) 1 NC_007954.1 heavy metal translocating P-type ATPase 4426957 4020248 Sden_3691 Shewanella denitrificans OS217 heavy metal translocating P-type ATPase YP_564687.1 4424576 R 318161 CDS YP_564688.1 91795037 4020249 4427459..4427719 1 NC_007954.1 hypothetical protein 4427719 4020249 Sden_3692 Shewanella denitrificans OS217 hypothetical protein YP_564688.1 4427459 D 318161 CDS YP_564689.1 91795038 4020250 complement(4428019..4428972) 1 NC_007954.1 hypothetical protein 4428972 4020250 Sden_3693 Shewanella denitrificans OS217 hypothetical protein YP_564689.1 4428019 R 318161 CDS YP_564690.1 91795039 4020251 complement(4429105..4430301) 1 NC_007954.1 HI0933-like protein 4430301 4020251 Sden_3694 Shewanella denitrificans OS217 HI0933-like protein YP_564690.1 4429105 R 318161 CDS YP_564691.1 91795040 4020252 complement(4430682..4431701) 1 NC_007954.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4431701 gpsA 4020252 gpsA Shewanella denitrificans OS217 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_564691.1 4430682 R 318161 CDS YP_564692.1 91795041 4020253 complement(4431706..4432200) 1 NC_007954.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4432200 4020253 Sden_3696 Shewanella denitrificans OS217 preprotein translocase subunit SecB YP_564692.1 4431706 R 318161 CDS YP_564693.1 91795042 4020254 complement(4432337..4432771) 1 NC_007954.1 rhodanese-like protein 4432771 4020254 Sden_3697 Shewanella denitrificans OS217 rhodanese-like protein YP_564693.1 4432337 R 318161 CDS YP_564694.1 91795043 4020255 4433061..4434605 1 NC_007954.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4434605 4020255 Sden_3698 Shewanella denitrificans OS217 phosphoglyceromutase YP_564694.1 4433061 D 318161 CDS YP_564695.1 91795044 4020256 4434616..4435755 1 NC_007954.1 peptidase M23B 4435755 4020256 Sden_3699 Shewanella denitrificans OS217 peptidase M23B YP_564695.1 4434616 D 318161 CDS YP_564696.1 91795045 4020257 4435795..4437000 1 NC_007954.1 carboxyl-terminal protease 4437000 4020257 Sden_3700 Shewanella denitrificans OS217 carboxyl-terminal protease YP_564696.1 4435795 D 318161 CDS YP_564697.1 91795046 4020258 4437042..4437779 1 NC_007954.1 hypothetical protein 4437779 4020258 Sden_3701 Shewanella denitrificans OS217 hypothetical protein YP_564697.1 4437042 D 318161 CDS YP_564698.1 91795047 4020259 complement(4437754..4438209) 1 NC_007954.1 hypothetical protein 4438209 4020259 Sden_3702 Shewanella denitrificans OS217 hypothetical protein YP_564698.1 4437754 R 318161 CDS YP_564699.1 91795048 4020260 complement(4438240..4438491) 1 NC_007954.1 hypothetical protein 4438491 4020260 Sden_3703 Shewanella denitrificans OS217 hypothetical protein YP_564699.1 4438240 R 318161 CDS YP_564700.1 91795049 4020266 complement(4445382..4446809) 1 NC_007954.1 4Fe-4S ferredoxin, iron-sulfur binding 4446809 4020266 Sden_3704 Shewanella denitrificans OS217 4Fe-4S ferredoxin, iron-sulfur binding YP_564700.1 4445382 R 318161 CDS YP_564701.1 91795050 4020267 4447098..4447397 1 NC_007954.1 hypothetical protein 4447397 4020267 Sden_3705 Shewanella denitrificans OS217 hypothetical protein YP_564701.1 4447098 D 318161 CDS YP_564702.1 91795051 4020268 4447778..4447978 1 NC_007954.1 hypothetical protein 4447978 4020268 Sden_3706 Shewanella denitrificans OS217 hypothetical protein YP_564702.1 4447778 D 318161 CDS YP_564703.1 91795052 4020269 complement(4447996..4448541) 1 NC_007954.1 transport-associated 4448541 4020269 Sden_3707 Shewanella denitrificans OS217 transport-associated YP_564703.1 4447996 R 318161 CDS YP_564704.1 91795053 4020270 complement(4448745..4449224) 1 NC_007954.1 hypothetical protein 4449224 4020270 Sden_3708 Shewanella denitrificans OS217 hypothetical protein YP_564704.1 4448745 R 318161 CDS YP_564705.1 91795054 4020271 4449504..4450877 1 NC_007954.1 sigma-54 factor, interaction region 4450877 4020271 Sden_3709 Shewanella denitrificans OS217 sigma-54 factor, interaction region YP_564705.1 4449504 D 318161 CDS YP_564706.1 91795055 4020272 complement(4450881..4452524) 1 NC_007954.1 hypothetical protein 4452524 4020272 Sden_3710 Shewanella denitrificans OS217 hypothetical protein YP_564706.1 4450881 R 318161 CDS YP_564707.1 91795056 4020273 complement(4452585..4452779) 1 NC_007954.1 hypothetical protein 4452779 4020273 Sden_3711 Shewanella denitrificans OS217 hypothetical protein YP_564707.1 4452585 R 318161 CDS YP_564708.1 91795057 4020274 complement(4452802..4452978) 1 NC_007954.1 hypothetical protein 4452978 4020274 Sden_3712 Shewanella denitrificans OS217 hypothetical protein YP_564708.1 4452802 R 318161 CDS YP_564709.1 91795058 4020275 complement(4453205..4454980) 1 NC_007954.1 protein kinase 4454980 4020275 Sden_3713 Shewanella denitrificans OS217 protein kinase YP_564709.1 4453205 R 318161 CDS YP_564710.1 91795059 4020276 complement(4454990..4456465) 1 NC_007954.1 nitrate transporter 4456465 4020276 Sden_3714 Shewanella denitrificans OS217 nitrate transporter YP_564710.1 4454990 R 318161 CDS YP_564711.1 91795060 4020277 complement(4456602..4456934) 1 NC_007954.1 nitrite reductase (NAD(P)H) large subunit, NirD 4456934 4020277 Sden_3715 Shewanella denitrificans OS217 nitrite reductase (NAD(P)H) large subunit, NirD YP_564711.1 4456602 R 318161 CDS YP_564712.1 91795061 4020278 complement(4456943..4459528) 1 NC_007954.1 nitrite reductase (NAD(P)H) large subunit, NirB 4459528 4020278 Sden_3716 Shewanella denitrificans OS217 nitrite reductase (NAD(P)H) large subunit, NirB YP_564712.1 4456943 R 318161 CDS YP_564713.1 91795062 4020279 complement(4459584..4460450) 1 NC_007954.1 uroporphyrin-III C-methyltransferase 4460450 4020279 Sden_3717 Shewanella denitrificans OS217 uroporphyrin-III C-methyltransferase YP_564713.1 4459584 R 318161 CDS YP_564714.1 91795063 4020280 4460872..4463562 1 NC_007954.1 molybdopterin oxidoreductase 4463562 4020280 Sden_3718 Shewanella denitrificans OS217 molybdopterin oxidoreductase YP_564714.1 4460872 D 318161 CDS YP_564715.1 91795064 4020281 4463643..4464500 1 NC_007954.1 esterase 4464500 4020281 Sden_3719 Shewanella denitrificans OS217 esterase YP_564715.1 4463643 D 318161 CDS YP_564716.1 91795065 4020282 4464828..4466030 1 NC_007954.1 transposase, mutator type 4466030 4020282 Sden_3720 Shewanella denitrificans OS217 transposase, mutator type YP_564716.1 4464828 D 318161 CDS YP_564717.1 91795066 4020283 complement(4466019..4466330) 1 NC_007954.1 transciptional regulator 4466330 4020283 Sden_3721 Shewanella denitrificans OS217 transciptional regulator YP_564717.1 4466019 R 318161 CDS YP_564718.1 91795067 4020284 4466677..4470039 1 NC_007954.1 ATP-binding region, ATPase-like protein 4470039 4020284 Sden_3722 Shewanella denitrificans OS217 ATP-binding region, ATPase-like protein YP_564718.1 4466677 D 318161 CDS YP_564719.1 91795068 4020285 4470032..4471048 1 NC_007954.1 response regulator receiver 4471048 4020285 Sden_3723 Shewanella denitrificans OS217 response regulator receiver YP_564719.1 4470032 D 318161 CDS YP_564720.1 91795069 4020286 4471252..4471521 1 NC_007954.1 hypothetical protein 4471521 4020286 Sden_3724 Shewanella denitrificans OS217 hypothetical protein YP_564720.1 4471252 D 318161 CDS YP_564721.1 91795070 4020287 4471884..4474970 1 NC_007954.1 protein kinase 4474970 4020287 Sden_3725 Shewanella denitrificans OS217 protein kinase YP_564721.1 4471884 D 318161 CDS YP_564722.1 91795071 4020288 4475019..4475975 1 NC_007954.1 forkhead-associated 4475975 4020288 Sden_3726 Shewanella denitrificans OS217 forkhead-associated YP_564722.1 4475019 D 318161 CDS YP_564723.1 91795072 4020289 complement(4476080..4476448) 1 NC_007954.1 hypothetical protein 4476448 4020289 Sden_3727 Shewanella denitrificans OS217 hypothetical protein YP_564723.1 4476080 R 318161 CDS YP_564724.1 91795073 4020290 complement(4476626..4485895) 1 NC_007954.1 cadherin 4485895 4020290 Sden_3728 Shewanella denitrificans OS217 cadherin YP_564724.1 4476626 R 318161 CDS YP_564725.1 91795074 4020291 complement(4486161..4486757) 1 NC_007954.1 phage tail Collar 4486757 4020291 Sden_3729 Shewanella denitrificans OS217 phage tail Collar YP_564725.1 4486161 R 318161 CDS YP_564726.1 91795075 4020292 complement(4487003..4488091) 1 NC_007954.1 hypothetical protein 4488091 4020292 Sden_3730 Shewanella denitrificans OS217 hypothetical protein YP_564726.1 4487003 R 318161 CDS YP_564727.1 91795076 4020293 complement(4488349..4488690) 1 NC_007954.1 hypothetical protein 4488690 4020293 Sden_3731 Shewanella denitrificans OS217 hypothetical protein YP_564727.1 4488349 R 318161 CDS YP_564728.1 91795077 4020294 complement(4488693..4489808) 1 NC_007954.1 hypothetical protein 4489808 4020294 Sden_3732 Shewanella denitrificans OS217 hypothetical protein YP_564728.1 4488693 R 318161 CDS YP_564729.1 91795078 4020295 complement(4489805..4496941) 1 NC_007954.1 amino acid adenylation 4496941 4020295 Sden_3733 Shewanella denitrificans OS217 amino acid adenylation YP_564729.1 4489805 R 318161 CDS YP_564730.1 91795079 4020296 complement(4496944..4497186) 1 NC_007954.1 hypothetical protein 4497186 4020296 Sden_3734 Shewanella denitrificans OS217 hypothetical protein YP_564730.1 4496944 R 318161 CDS YP_564731.1 91795080 4020297 complement(4497223..4499499) 1 NC_007954.1 penicillin amidase 4499499 4020297 Sden_3735 Shewanella denitrificans OS217 penicillin amidase YP_564731.1 4497223 R 318161 CDS YP_564732.1 91795081 4020298 complement(4499499..4500983) 1 NC_007954.1 AMP-dependent synthetase and ligase 4500983 4020298 Sden_3736 Shewanella denitrificans OS217 AMP-dependent synthetase and ligase YP_564732.1 4499499 R 318161 CDS YP_564733.1 91795082 4020299 complement(4500984..4504028) 1 NC_007954.1 acriflavin resistance protein 4504028 4020299 Sden_3737 Shewanella denitrificans OS217 acriflavin resistance protein YP_564733.1 4500984 R 318161 CDS YP_564734.1 91795083 4020300 complement(4504028..4505110) 1 NC_007954.1 secretion protein HlyD 4505110 4020300 Sden_3738 Shewanella denitrificans OS217 secretion protein HlyD YP_564734.1 4504028 R 318161 CDS YP_564735.1 91795084 4020301 complement(4505092..4506171) 1 NC_007954.1 hypothetical protein 4506171 4020301 Sden_3739 Shewanella denitrificans OS217 hypothetical protein YP_564735.1 4505092 R 318161 CDS YP_564736.1 91795085 4020302 complement(4506244..4506960) 1 NC_007954.1 TENA/THI-4 protein 4506960 4020302 Sden_3740 Shewanella denitrificans OS217 TENA/THI-4 protein YP_564736.1 4506244 R 318161 CDS YP_564737.1 91795086 4020303 complement(4506960..4507508) 1 NC_007954.1 hypothetical protein 4507508 4020303 Sden_3741 Shewanella denitrificans OS217 hypothetical protein YP_564737.1 4506960 R 318161 CDS YP_564738.1 91795087 4020304 complement(4507521..4508126) 1 NC_007954.1 negative transcriptional regulator 4508126 4020304 Sden_3742 Shewanella denitrificans OS217 negative transcriptional regulator YP_564738.1 4507521 R 318161 CDS YP_564739.1 91795088 4020305 complement(4508656..4510485) 1 NC_007954.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4510485 4020305 Sden_3743 Shewanella denitrificans OS217 glucosamine--fructose-6-phosphate aminotransferase YP_564739.1 4508656 R 318161 CDS YP_564740.1 91795089 4020306 complement(4510540..4511310) 1 NC_007954.1 regulatory protein, DeoR 4511310 4020306 Sden_3744 Shewanella denitrificans OS217 regulatory protein, DeoR YP_564740.1 4510540 R 318161 CDS YP_564741.1 91795090 4020307 complement(4511528..4512154) 1 NC_007954.1 isochorismatase hydrolase 4512154 4020307 Sden_3745 Shewanella denitrificans OS217 isochorismatase hydrolase YP_564741.1 4511528 R 318161 CDS YP_564742.1 91795091 4020308 complement(4512218..4513081) 1 NC_007954.1 Pirin-like protein 4513081 4020308 Sden_3746 Shewanella denitrificans OS217 Pirin-like protein YP_564742.1 4512218 R 318161 CDS YP_564743.1 91795092 4020309 4513203..4514108 1 NC_007954.1 LysR, substrate-binding 4514108 4020309 Sden_3747 Shewanella denitrificans OS217 LysR, substrate-binding YP_564743.1 4513203 D 318161 CDS YP_564744.1 91795093 4020310 complement(4514212..4515576) 1 NC_007954.1 UDP-N-acetylglucosamine pyrophosphorylase 4515576 4020310 Sden_3748 Shewanella denitrificans OS217 UDP-N-acetylglucosamine pyrophosphorylase YP_564744.1 4514212 R 318161 CDS YP_564745.1 91795094 4020311 complement(4516371..4516985) 1 NC_007954.1 regulatory protein, LuxR 4516985 4020311 Sden_3749 Shewanella denitrificans OS217 regulatory protein, LuxR YP_564745.1 4516371 R 318161 CDS YP_564746.1 91795095 4020312 complement(4517306..4519582) 1 NC_007954.1 transcriptional regulatory protein-like protein 4519582 4020312 Sden_3750 Shewanella denitrificans OS217 transcriptional regulatory protein-like protein YP_564746.1 4517306 R 318161 CDS YP_564747.1 91795096 4020313 complement(4519846..4520274) 1 NC_007954.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4520274 atpC 4020313 atpC Shewanella denitrificans OS217 F0F1 ATP synthase subunit epsilon YP_564747.1 4519846 R 318161 CDS YP_564748.1 91795097 4020314 complement(4520310..4521701) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4521701 4020314 Sden_3752 Shewanella denitrificans OS217 F0F1 ATP synthase subunit beta YP_564748.1 4520310 R 318161 CDS YP_564749.1 91795098 4020315 complement(4521738..4522598) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4522598 4020315 Sden_3753 Shewanella denitrificans OS217 F0F1 ATP synthase subunit gamma YP_564749.1 4521738 R 318161 CDS YP_564750.1 91795099 4020316 complement(4522649..4524190) 1 NC_007954.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4524190 4020316 Sden_3754 Shewanella denitrificans OS217 F0F1 ATP synthase subunit alpha YP_564750.1 4522649 R 318161 CDS YP_564751.1 91795100 4020317 complement(4524205..4524738) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4524738 4020317 Sden_3755 Shewanella denitrificans OS217 F0F1 ATP synthase subunit delta YP_564751.1 4524205 R 318161 CDS YP_564752.1 91795101 4020318 complement(4524753..4525223) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4525223 4020318 Sden_3756 Shewanella denitrificans OS217 F0F1 ATP synthase subunit B YP_564752.1 4524753 R 318161 CDS YP_564753.1 91795102 4020319 complement(4525261..4525512) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4525512 4020319 Sden_3757 Shewanella denitrificans OS217 F0F1 ATP synthase subunit C YP_564753.1 4525261 R 318161 CDS YP_564754.1 91795103 4020320 complement(4525579..4526373) 1 NC_007954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4526373 4020320 Sden_3758 Shewanella denitrificans OS217 F0F1 ATP synthase subunit A YP_564754.1 4525579 R 318161 CDS YP_564755.1 91795104 4020321 complement(4526386..4526769) 1 NC_007954.1 ATP synthase I chain 4526769 4020321 Sden_3759 Shewanella denitrificans OS217 ATP synthase I chain YP_564755.1 4526386 R 318161 CDS YP_564756.1 91795105 4020322 complement(4526991..4527875) 1 NC_007954.1 parB-like partition proteins 4527875 4020322 Sden_3760 Shewanella denitrificans OS217 parB-like partition proteins YP_564756.1 4526991 R 318161 CDS YP_564757.1 91795106 4020323 complement(4527885..4528670) 1 NC_007954.1 cobyrinic acid a,c-diamide synthase 4528670 4020323 Sden_3761 Shewanella denitrificans OS217 cobyrinic acid a,c-diamide synthase YP_564757.1 4527885 R 318161 CDS YP_564758.1 91795107 4020324 complement(4528747..4529373) 1 NC_007954.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4529373 gidB 4020324 gidB Shewanella denitrificans OS217 16S rRNA methyltransferase GidB YP_564758.1 4528747 R 318161 CDS YP_564759.1 91795108 4020325 complement(4529486..4531375) 1 NC_007954.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4531375 4020325 Sden_3763 Shewanella denitrificans OS217 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_564759.1 4529486 R 318161 CDS YP_564760.1 91795109 4020326 complement(4531829..4532272) 1 NC_007954.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4532272 4020326 Sden_3764 Shewanella denitrificans OS217 flavodoxin YP_564760.1 4531829 R 318161 CDS YP_564761.1 91795110 4020327 4532438..4532992 1 NC_007954.1 sodium:alanine symporter 4532992 4020327 Sden_3765 Shewanella denitrificans OS217 sodium:alanine symporter YP_564761.1 4532438 D 318161 CDS YP_564762.1 91795111 4020328 complement(4533279..4534118) 1 NC_007954.1 carboxylesterase 4534118 4020328 Sden_3766 Shewanella denitrificans OS217 carboxylesterase YP_564762.1 4533279 R 318161 CDS YP_564763.1 91795112 4020329 complement(4534181..4535311) 1 NC_007954.1 zinc-binding alcohol dehydrogenase 4535311 4020329 Sden_3767 Shewanella denitrificans OS217 zinc-binding alcohol dehydrogenase YP_564763.1 4534181 R 318161 CDS YP_564764.1 91795113 4020330 4535444..4536316 1 NC_007954.1 LysR, substrate-binding 4536316 4020330 Sden_3768 Shewanella denitrificans OS217 LysR, substrate-binding YP_564764.1 4535444 D 318161 CDS YP_564765.1 91795114 4020331 complement(4536374..4537201) 1 NC_007954.1 hypothetical protein 4537201 4020331 Sden_3769 Shewanella denitrificans OS217 hypothetical protein YP_564765.1 4536374 R 318161 CDS YP_564766.1 91795115 4020332 complement(4537223..4538131) 1 NC_007954.1 S6 modification enzyme RimK 4538131 4020332 Sden_3770 Shewanella denitrificans OS217 S6 modification enzyme RimK YP_564766.1 4537223 R 318161 CDS YP_564767.1 91795116 4020333 4538318..4540114 1 NC_007954.1 asparagine synthase, glutamine-hydrolyzing 4540114 4020333 Sden_3771 Shewanella denitrificans OS217 asparagine synthase, glutamine-hydrolyzing YP_564767.1 4538318 D 318161 CDS YP_564768.1 91795117 4020334 complement(4540222..4540818) 1 NC_007954.1 hypothetical protein 4540818 4020334 Sden_3772 Shewanella denitrificans OS217 hypothetical protein YP_564768.1 4540222 R 318161 CDS YP_564769.1 91795118 4020335 complement(4540987..4541601) 1 NC_007954.1 DNA polymerase III, epsilon subunit 4541601 4020335 Sden_3773 Shewanella denitrificans OS217 DNA polymerase III, epsilon subunit YP_564769.1 4540987 R 318161 CDS YP_564770.1 91795119 4020336 complement(4541643..4543043) 1 NC_007954.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4543043 trmE 4020336 trmE Shewanella denitrificans OS217 tRNA modification GTPase TrmE YP_564770.1 4541643 R 318161 CDS YP_564771.1 91795120 4020337 complement(4543095..4544720) 1 NC_007954.1 60 kDa inner membrane insertion protein 4544720 4020337 Sden_3775 Shewanella denitrificans OS217 60 kDa inner membrane insertion protein YP_564771.1 4543095 R 318161 CDS YP_564772.1 91795121 4020338 complement(4544724..4544978) 1 NC_007954.1 hypothetical protein 4544978 4020338 Sden_3776 Shewanella denitrificans OS217 hypothetical protein YP_564772.1 4544724 R 318161 CDS YP_564773.1 91795122 4020339 complement(4544945..4545301) 1 NC_007954.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4545301 rnpA 4020339 rnpA Shewanella denitrificans OS217 ribonuclease P YP_564773.1 4544945 R 318161 CDS YP_564774.1 91795123 4020340 complement(4545314..4545451) 1 NC_007954.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4545451 rpmH 4020340 rpmH Shewanella denitrificans OS217 50S ribosomal protein L34 YP_564774.1 4545314 R 318161 CDS