-- dump date 20140620_063022 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 326297000001 SEQ_END SEQ_END NC_008700.1 4306142 4306142 DR NC_008700.1; contig end 4306142..4306142 Shewanella amazonensis SB2B YP_925883.1 CDS Sama_0001 NC_008700.1 70 510 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(70..510) Shewanella amazonensis SB2B 4606043 YP_925884.1 CDS Sama_0002 NC_008700.1 657 1571 D KEGG: vpa:VP2298 hypothetical protein; hypothetical protein 657..1571 Shewanella amazonensis SB2B 4602259 YP_925885.1 CDS Sama_0003 NC_008700.1 1522 2367 R KEGG: sdn:Sden_3766 carboxylesterase; carboxylesterase complement(1522..2367) Shewanella amazonensis SB2B 4602260 YP_925886.1 CDS Sama_0004 NC_008700.1 2377 3510 R KEGG: sdn:Sden_3767 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(2377..3510) Shewanella amazonensis SB2B 4602261 YP_925887.1 CDS Sama_0005 NC_008700.1 3686 4558 D KEGG: sdn:Sden_3768 LysR, substrate-binding; LysR, substrate-binding 3686..4558 Shewanella amazonensis SB2B 4602262 YP_925888.1 CDS Sama_0006 NC_008700.1 4686 5186 D KEGG: son:SO0302 hypothetical protein; hypothetical protein 4686..5186 Shewanella amazonensis SB2B 4602263 YP_925889.1 CDS Sama_0007 NC_008700.1 5295 6401 D KEGG: mxa:MXAN_3389 oxidoreductase, FAD/FMN-binding; FAD/FMN-binding oxidoreductase 5295..6401 Shewanella amazonensis SB2B 4602264 YP_925890.1 CDS trmE NC_008700.1 6502 7863 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(6502..7863) Shewanella amazonensis SB2B 4602265 YP_925891.1 CDS Sama_0009 NC_008700.1 7951 9576 R KEGG: son:SO0004 inner membrane protein, 60 kDa; inner membrane protein, 60 kDa complement(7951..9576) Shewanella amazonensis SB2B 4602266 YP_925892.1 CDS Sama_0010 NC_008700.1 9581 9835 R KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein complement(9581..9835) Shewanella amazonensis SB2B 4602267 YP_925893.1 CDS rnpA NC_008700.1 9802 10158 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(9802..10158) Shewanella amazonensis SB2B 4602268 YP_925894.1 CDS rpmH NC_008700.1 10175 10312 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(10175..10312) Shewanella amazonensis SB2B 4602269 YP_925895.1 CDS dnaA NC_008700.1 10775 12148 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 10775..12148 Shewanella amazonensis SB2B 4602270 YP_925896.1 CDS Sama_0014 NC_008700.1 12168 13268 D KEGG: son:SO0009 DNA polymerase III, beta subunit; DNA-directed DNA polymerase 12168..13268 Shewanella amazonensis SB2B 4602271 YP_925897.1 CDS recF NC_008700.1 13296 14378 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 13296..14378 Shewanella amazonensis SB2B 4602272 YP_925898.1 CDS Sama_0016 NC_008700.1 14471 16888 D KEGG: son:SO0011 DNA gyrase subunit B; DNA topoisomerase 14471..16888 Shewanella amazonensis SB2B 4602273 YP_925899.1 CDS Sama_0017 NC_008700.1 16992 17393 R KEGG: son:SO0464 MutT/nudix family protein; MutT/nudix family protein complement(16992..17393) Shewanella amazonensis SB2B 4602274 YP_925900.1 CDS Sama_0018 NC_008700.1 17393 18046 R KEGG: pha:PSHAa1441 pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (pyroglutamyl-peptidase I) (PGP-I) (pyrase); pyroglutamyl-peptidase I complement(17393..18046) Shewanella amazonensis SB2B 4602275 YP_925901.1 CDS Sama_0019 NC_008700.1 18058 19041 R KEGG: rso:RSc2167 probable transmembrane protein; putative transmembrane protein complement(18058..19041) Shewanella amazonensis SB2B 4602276 YP_925902.1 CDS Sama_0020 NC_008700.1 19038 19778 R KEGG: bur:Bcep18194_B2013 protein of unknown function DUF969; hypothetical protein complement(19038..19778) Shewanella amazonensis SB2B 4602277 YP_925903.1 CDS Sama_0021 NC_008700.1 19768 20493 R KEGG: hit:NTHI2036 hypothetical protein; hypothetical protein complement(19768..20493) Shewanella amazonensis SB2B 4602278 YP_925904.1 CDS Sama_0022 NC_008700.1 20486 21418 R KEGG: sbo:SBO_0571 putative carboxylase; Urea carboxylase complement(20486..21418) Shewanella amazonensis SB2B 4602279 YP_925905.1 CDS Sama_0023 NC_008700.1 21420 22082 R KEGG: bxe:Bxe_A0195 conserved hypothetical protein 370; hypothetical protein complement(21420..22082) Shewanella amazonensis SB2B 4602280 YP_925906.1 CDS Sama_0024 NC_008700.1 22337 23392 D KEGG: son:SO0013 hypothetical protein; putative signal transduction protein 22337..23392 Shewanella amazonensis SB2B 4602281 YP_925907.1 CDS glyS NC_008700.1 23457 25526 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(23457..25526) Shewanella amazonensis SB2B 4602282 YP_925908.1 CDS glyQ NC_008700.1 25552 26457 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(25552..26457) Shewanella amazonensis SB2B 4602283 YP_925909.1 CDS Sama_0027 NC_008700.1 26565 27134 D KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I 26565..27134 Shewanella amazonensis SB2B 4602284 YP_925910.1 CDS Sama_0028 NC_008700.1 27239 30427 R KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase complement(27239..30427) Shewanella amazonensis SB2B 4602285 YP_925911.1 CDS Sama_0029 NC_008700.1 30571 30870 R KEGG: sdn:Sden_0013 SirA-like protein; redox protein regulator of disulfide bond formation complement(30571..30870) Shewanella amazonensis SB2B 4602286 YP_925912.1 CDS Sama_0030 NC_008700.1 31147 33129 D KEGG: son:SO4466 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 31147..33129 Shewanella amazonensis SB2B 4602287 YP_925913.1 CDS fadA NC_008700.1 33194 34357 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(33194..34357) Shewanella amazonensis SB2B 4602288 YP_925914.1 CDS fadB NC_008700.1 34377 36527 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(34377..36527) Shewanella amazonensis SB2B 4602289 YP_925915.1 CDS Sama_0033 NC_008700.1 36808 38127 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 36808..38127 Shewanella amazonensis SB2B 4602290 YP_925916.1 CDS Sama_0034 NC_008700.1 38130 38750 D KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 38130..38750 Shewanella amazonensis SB2B 4602291 YP_925917.1 CDS Sama_0035 NC_008700.1 38875 40332 D KEGG: shm:Shewmr7_0019 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 38875..40332 Shewanella amazonensis SB2B 4602292 YP_925918.1 CDS Sama_0036 NC_008700.1 40332 40865 D KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 40332..40865 Shewanella amazonensis SB2B 4602293 YP_925919.1 CDS Sama_0037 NC_008700.1 40878 41186 R KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(40878..41186) Shewanella amazonensis SB2B 4602294 YP_925920.1 CDS Sama_0038 NC_008700.1 41376 41927 D KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 41376..41927 Shewanella amazonensis SB2B 4602295 YP_925921.1 CDS Sama_0039 NC_008700.1 41933 43375 R KEGG: son:SO0028 potassium uptake protein TrkH; potassium uptake protein TrkH complement(41933..43375) Shewanella amazonensis SB2B 4602296 YP_925922.1 CDS trkA NC_008700.1 43378 44787 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(43378..44787) Shewanella amazonensis SB2B 4602297 YP_925923.1 CDS Sama_0041 NC_008700.1 44805 46088 R KEGG: sdn:Sden_0022 sun protein; sun protein complement(44805..46088) Shewanella amazonensis SB2B 4602298 YP_925924.1 CDS Sama_0042 NC_008700.1 46088 47050 R KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(46088..47050) Shewanella amazonensis SB2B 4602299 YP_925925.1 CDS def NC_008700.1 47066 47569 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(47066..47569) Shewanella amazonensis SB2B 4602300 YP_925926.1 CDS Sama_0044 NC_008700.1 47757 48797 D KEGG: son:SO0033 LysM domain protein; LysM domain-containing protein 47757..48797 Shewanella amazonensis SB2B 4602301 YP_925927.1 CDS Sama_0045 NC_008700.1 48882 49898 D KEGG: son:SO0034 DNA processing protein DprA, putative; DNA processing protein DprA 48882..49898 Shewanella amazonensis SB2B 4602302 YP_925928.1 CDS Sama_0046 NC_008700.1 49901 50380 D KEGG: shm:Shewmr7_0030 protein of unknown function DUF494; hypothetical protein 49901..50380 Shewanella amazonensis SB2B 4602303 YP_925929.1 CDS Sama_0047 NC_008700.1 50462 50728 R KEGG: cps:CPS_2237 microbial collagenase; hypothetical protein complement(50462..50728) Shewanella amazonensis SB2B 4602304 YP_925930.1 CDS Sama_0048 NC_008700.1 51290 51853 D KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; topoisomerase DNA-binding C4 zinc finger domain-containing protein 51290..51853 Shewanella amazonensis SB2B 4602305 YP_925931.1 CDS Sama_0049 NC_008700.1 51951 52523 D KEGG: sdn:Sden_0029 SUA5/YciO/YrdC-like protein; SUA5/YciO/YrdC-like protein 51951..52523 Shewanella amazonensis SB2B 4602306 YP_925932.1 CDS Sama_0050 NC_008700.1 52537 53451 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 52537..53451 Shewanella amazonensis SB2B 4602307 YP_925933.1 CDS Sama_0051 NC_008700.1 53477 53908 R KEGG: sdn:Sden_0031 globin; globin complement(53477..53908) Shewanella amazonensis SB2B 4602308 YP_925934.1 CDS Sama_0052 NC_008700.1 54060 54896 D KEGG: sdn:Sden_0034 shikimate 5-dehydrogenase; shikimate dehydrogenase 54060..54896 Shewanella amazonensis SB2B 4602309 YP_925935.1 CDS Sama_0053 NC_008700.1 54899 55156 D KEGG: son:SO0041 hypothetical protein; hypothetical protein 54899..55156 Shewanella amazonensis SB2B 4602310 YP_925936.1 CDS Sama_0054 NC_008700.1 55153 55701 R KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase complement(55153..55701) Shewanella amazonensis SB2B 4602311 YP_925937.1 CDS Sama_0055 NC_008700.1 61309 61560 D KEGG: son:SO0044 hypothetical protein; hypothetical protein 61309..61560 Shewanella amazonensis SB2B 4605905 YP_925938.1 CDS Sama_0056 NC_008700.1 61576 62031 D KEGG: son:SO0045 Rrf2 family protein; Rrf2 family protein 61576..62031 Shewanella amazonensis SB2B 4602313 YP_925939.1 CDS Sama_0057 NC_008700.1 62006 62758 R KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ; hypothetical protein complement(62006..62758) Shewanella amazonensis SB2B 4602314 YP_925940.1 CDS Sama_0058 NC_008700.1 62780 63976 R KEGG: son:SO0047 carboxyl-terminal protease, putative; C-terminal processing peptidase complement(62780..63976) Shewanella amazonensis SB2B 4602315 YP_925941.1 CDS Sama_0059 NC_008700.1 64007 65143 R KEGG: son:SO0048 peptidase, M23/M37 family; M24/M37 family peptidase complement(64007..65143) Shewanella amazonensis SB2B 4602316 YP_925942.1 CDS Sama_0060 NC_008700.1 65149 66690 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(65149..66690) Shewanella amazonensis SB2B 4602317 YP_925943.1 CDS Sama_0061 NC_008700.1 66964 67356 D KEGG: sdn:Sden_3697 rhodanese-like protein; rhodanese-like protein 66964..67356 Shewanella amazonensis SB2B 4602318 YP_925944.1 CDS Sama_0062 NC_008700.1 67576 68055 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 67576..68055 Shewanella amazonensis SB2B 4602319 YP_925945.1 CDS gpsA NC_008700.1 68062 69081 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 68062..69081 Shewanella amazonensis SB2B 4602320 YP_925946.1 CDS Sama_0064 NC_008700.1 69152 70345 D KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein 69152..70345 Shewanella amazonensis SB2B 4602321 YP_925947.1 CDS Sama_0065 NC_008700.1 70912 71829 D KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 70912..71829 Shewanella amazonensis SB2B 4602322 YP_925948.1 CDS Sama_0066 NC_008700.1 71844 72794 D KEGG: sde:Sde_0403 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein 71844..72794 Shewanella amazonensis SB2B 4602323 YP_925949.1 CDS Sama_0067 NC_008700.1 72794 75859 D KEGG: hch:HCH_00809 signal transduction histidine kinase; signal transduction histidine kinase-like protein 72794..75859 Shewanella amazonensis SB2B 4602324 YP_925950.1 CDS mogA NC_008700.1 75976 76506 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 75976..76506 Shewanella amazonensis SB2B 4602325 YP_925951.1 CDS Sama_0069 NC_008700.1 76553 76999 D KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 family lipoprotein 76553..76999 Shewanella amazonensis SB2B 4602326 YP_925952.1 CDS Sama_0070 NC_008700.1 77043 77630 R KEGG: mlo:mlr8324 hypothetical protein; hypothetical protein complement(77043..77630) Shewanella amazonensis SB2B 4602327 YP_925953.1 CDS Sama_0071 NC_008700.1 77654 77893 R KEGG: son:SO0079 hypothetical protein; hypothetical protein complement(77654..77893) Shewanella amazonensis SB2B 4602328 YP_925954.1 CDS pbpG NC_008700.1 77895 78806 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(77895..78806) Shewanella amazonensis SB2B 4602329 YP_925955.1 CDS Sama_0073 NC_008700.1 78895 79329 R KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(78895..79329) Shewanella amazonensis SB2B 4602330 YP_925956.1 CDS Sama_0074 NC_008700.1 79435 80115 R KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD-superfamily hydrolase complement(79435..80115) Shewanella amazonensis SB2B 4602331 YP_925957.1 CDS Sama_0075 NC_008700.1 80333 81535 D KEGG: sdn:Sden_0079 hypothetical protein; hypothetical protein 80333..81535 Shewanella amazonensis SB2B 4602332 YP_925958.1 CDS Sama_0076 NC_008700.1 81833 82699 D KEGG: sdn:Sden_3013 transcription activator, effector binding; transcription activator, effector binding 81833..82699 Shewanella amazonensis SB2B 4602333 YP_925959.1 CDS Sama_0077 NC_008700.1 82839 84014 R KEGG: ppr:PBPRA1786 hypothetical transcriptional regulator; MerR family transcriptional regulator complement(82839..84014) Shewanella amazonensis SB2B 4602334 YP_925960.1 CDS Sama_0078 NC_008700.1 84659 86656 D KEGG: ccr:CC3723 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 84659..86656 Shewanella amazonensis SB2B 4602335 YP_925961.1 CDS Sama_0079 NC_008700.1 86728 87702 R KEGG: bur:Bcep18194_A4870 putative esterase; putative esterase complement(86728..87702) Shewanella amazonensis SB2B 4602336 YP_925962.1 CDS Sama_0080 NC_008700.1 87909 89147 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(87909..89147) Shewanella amazonensis SB2B 4602337 YP_925963.1 CDS Sama_0081 NC_008700.1 89362 90066 D KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 89362..90066 Shewanella amazonensis SB2B 4602338 YP_925964.1 CDS Sama_0082 NC_008700.1 90316 92769 D KEGG: sdn:Sden_3670 GGDEF domain protein; diguanylate cyclase 90316..92769 Shewanella amazonensis SB2B 4602339 YP_925965.1 CDS Sama_0083 NC_008700.1 92823 93776 R KEGG: she:Shewmr4_3914 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(92823..93776) Shewanella amazonensis SB2B 4602340 YP_925966.1 CDS Sama_0084 NC_008700.1 93820 95679 R KEGG: son:SO4732 hypothetical protein; hypothetical protein complement(93820..95679) Shewanella amazonensis SB2B 4602341 YP_925967.1 CDS Sama_0085 NC_008700.1 95910 96908 D catalyzes the formation of inosine from adenosine; adenosine deaminase 95910..96908 Shewanella amazonensis SB2B 4602342 YP_925968.1 CDS Sama_0086 NC_008700.1 96995 98335 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(96995..98335) Shewanella amazonensis SB2B 4602343 YP_925969.1 CDS Sama_0087 NC_008700.1 98474 99745 D KEGG: pat:Patl_4277 amidohydrolase; amidohydrolase 98474..99745 Shewanella amazonensis SB2B 4602344 YP_925970.1 CDS Sama_0088 NC_008700.1 99802 100269 R KEGG: son:SO4729 hypothetical protein; hypothetical protein complement(99802..100269) Shewanella amazonensis SB2B 4602345 YP_925971.1 CDS Sama_0089 NC_008700.1 100286 100822 R KEGG: son:SO4728 hypothetical protein; hypothetical protein complement(100286..100822) Shewanella amazonensis SB2B 4602346 YP_925972.1 CDS Sama_0090 NC_008700.1 100859 101539 R KEGG: son:SO4727 hypothetical protein; hypothetical protein complement(100859..101539) Shewanella amazonensis SB2B 4602347 YP_925973.1 CDS Sama_0091 NC_008700.1 102313 102933 R KEGG: sdn:Sden_3622 cytochrome c, class I; cytochrome c, class I complement(102313..102933) Shewanella amazonensis SB2B 4602348 YP_925974.1 CDS engB NC_008700.1 103103 103756 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 103103..103756 Shewanella amazonensis SB2B 4602349 YP_925975.1 CDS Sama_0093 NC_008700.1 104678 107449 R KEGG: son:SO4669 DNA polymerase I; DNA-directed DNA polymerase complement(104678..107449) Shewanella amazonensis SB2B 4602350 YP_925976.1 CDS Sama_0094 NC_008700.1 107836 108489 D KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 107836..108489 Shewanella amazonensis SB2B 4602351 YP_925977.1 CDS Sama_0095 NC_008700.1 108523 109353 R KEGG: son:SO4671 glpG protein; glpG protein complement(108523..109353) Shewanella amazonensis SB2B 4602352 YP_925978.1 CDS Sama_0096 NC_008700.1 109353 109664 R KEGG: son:SO4672 glpE protein; glpE protein complement(109353..109664) Shewanella amazonensis SB2B 4602353 YP_925979.1 CDS tdh NC_008700.1 109791 110816 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(109791..110816) Shewanella amazonensis SB2B 4602354 YP_925980.1 CDS Sama_0098 NC_008700.1 110838 112031 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(110838..112031) Shewanella amazonensis SB2B 4602355 YP_925981.1 CDS Sama_0099 NC_008700.1 112290 112925 R KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(112290..112925) Shewanella amazonensis SB2B 4602356 YP_925982.1 CDS Sama_0100 NC_008700.1 113051 114313 D KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid (KDO) transferase 113051..114313 Shewanella amazonensis SB2B 4602357 YP_925983.1 CDS Sama_0101 NC_008700.1 114298 115050 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(114298..115050) Shewanella amazonensis SB2B 4602358 YP_925984.1 CDS Sama_0102 NC_008700.1 115093 116145 D KEGG: shm:Shewmr7_3988 glycosyl transferase, family 9; glycosyl transferase family protein 115093..116145 Shewanella amazonensis SB2B 4602359 YP_925985.1 CDS Sama_0103 NC_008700.1 116150 117250 D KEGG: pha:PSHAa2321 hypothetical protein; hypothetical protein 116150..117250 Shewanella amazonensis SB2B 4602360 YP_925986.1 CDS Sama_0104 NC_008700.1 117247 118344 D KEGG: son:SO4679 glycosyl transferase, group 1 family protein; glycoside hydrolase 117247..118344 Shewanella amazonensis SB2B 4602361 YP_925987.1 CDS Sama_0105 NC_008700.1 118400 119377 R KEGG: vch:VC0229 hypothetical protein; hypothetical protein complement(118400..119377) Shewanella amazonensis SB2B 4602362 YP_925988.1 CDS Sama_0106 NC_008700.1 119428 120150 R KEGG: vch:VC0230 hypothetical protein; hypothetical protein complement(119428..120150) Shewanella amazonensis SB2B 4602363 YP_925989.1 CDS Sama_0107 NC_008700.1 120147 121730 R KEGG: vch:VC0231 hypothetical protein; hypothetical protein complement(120147..121730) Shewanella amazonensis SB2B 4602364 YP_925990.1 CDS Sama_0108 NC_008700.1 121738 122112 R KEGG: vch:VC0232 hypothetical protein; hypothetical protein complement(121738..122112) Shewanella amazonensis SB2B 4602365 YP_925991.1 CDS Sama_0109 NC_008700.1 122136 123344 R KEGG: son:SO4681 glycosyl transferase, group 1 family protein; glycoside hydrolase complement(122136..123344) Shewanella amazonensis SB2B 4602366 YP_925992.1 CDS Sama_0110 NC_008700.1 123549 124118 D KEGG: son:SO4684 phosphopantetheine adenylyltransferase; pantetheine-phosphate adenylyltransferase 123549..124118 Shewanella amazonensis SB2B 4602367 YP_925993.1 CDS Sama_0111 NC_008700.1 124137 125621 D KEGG: sdn:Sden_0209 hypothetical protein; hypothetical protein 124137..125621 Shewanella amazonensis SB2B 4602368 YP_925994.1 CDS Sama_0112 NC_008700.1 125758 126489 D KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 125758..126489 Shewanella amazonensis SB2B 4602369 YP_925995.1 CDS Sama_0113 NC_008700.1 126486 127163 D KEGG: son:SO4689 hypothetical protein; hypothetical protein 126486..127163 Shewanella amazonensis SB2B 4602370 YP_925996.1 CDS Sama_0114 NC_008700.1 127172 128935 D KEGG: son:SO4690 hypothetical protein; hypothetical protein 127172..128935 Shewanella amazonensis SB2B 4602371 YP_925997.1 CDS Sama_0115 NC_008700.1 129110 130114 D KEGG: bce:BC0671 sphingomyelin phosphodiesterase; phospholipase C 129110..130114 Shewanella amazonensis SB2B 4602372 YP_925998.1 CDS Sama_0116 NC_008700.1 130181 131071 R KEGG: rfr:Rfer_3745 protein of unknown function DUF6, transmembrane; hypothetical protein complement(130181..131071) Shewanella amazonensis SB2B 4602373 YP_925999.1 CDS Sama_0117 NC_008700.1 131236 132051 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(131236..132051) Shewanella amazonensis SB2B 4602374 YP_926000.1 CDS Sama_0118 NC_008700.1 132080 132517 R KEGG: son:SO4725 hypothetical protein; hypothetical protein complement(132080..132517) Shewanella amazonensis SB2B 4602375 YP_926001.1 CDS Sama_0119 NC_008700.1 132579 133562 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(132579..133562) Shewanella amazonensis SB2B 4602376 YP_926002.1 CDS Sama_0120 NC_008700.1 133572 135371 R KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA complement(133572..135371) Shewanella amazonensis SB2B 4602377 YP_926003.1 CDS Sama_0121 NC_008700.1 135388 135978 R KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein complement(135388..135978) Shewanella amazonensis SB2B 4602378 YP_926004.1 CDS Sama_0122 NC_008700.1 135962 136654 R KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein complement(135962..136654) Shewanella amazonensis SB2B 4602379 YP_926005.1 CDS Sama_0123 NC_008700.1 136654 137361 R KEGG: son:SO4720 ABC transporter, permease protein; ABC transporter permease complement(136654..137361) Shewanella amazonensis SB2B 4602380 YP_926006.1 CDS Sama_0124 NC_008700.1 137358 138170 R KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; putative sulfate transport system substrate-binding protein complement(137358..138170) Shewanella amazonensis SB2B 4602381 YP_926007.1 CDS Sama_0125 NC_008700.1 138447 139829 D KEGG: son:SO4718 sigma-54 dependent response regulator; response regulator receiver protein 138447..139829 Shewanella amazonensis SB2B 4602382 YP_926008.1 CDS Sama_0126 NC_008700.1 139832 141958 D KEGG: son:SO4717 sensor histidine kinase; sensor histidine kinase 139832..141958 Shewanella amazonensis SB2B 4602383 YP_926009.1 CDS Sama_0127 NC_008700.1 142808 143269 R KEGG: son:SO4716 acetyltransferase, GNAT family; acetyltransferase complement(142808..143269) Shewanella amazonensis SB2B 4602384 YP_926010.1 CDS Sama_0128 NC_008700.1 143351 144010 R KEGG: son:SO4715 hypothetical protein; hypothetical protein complement(143351..144010) Shewanella amazonensis SB2B 4602385 YP_926011.1 CDS Sama_0129 NC_008700.1 144286 145017 D KEGG: son:SO4714 hypothetical protein; hypothetical protein 144286..145017 Shewanella amazonensis SB2B 4602386 YP_926012.1 CDS Sama_0130 NC_008700.1 145079 146437 R KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; menaquinone-specific isochorismate synthase complement(145079..146437) Shewanella amazonensis SB2B 4602387 YP_926013.1 CDS Sama_0131 NC_008700.1 146791 148878 D KEGG: nha:Nham_3500 TonB-dependent receptor; TonB-dependent receptor 146791..148878 Shewanella amazonensis SB2B 4602388 YP_926014.1 CDS Sama_0132 NC_008700.1 148875 150365 D KEGG: shm:Shewmr7_3959 ABC transporter related; ABC transporter-like protein 148875..150365 Shewanella amazonensis SB2B 4602389 YP_926015.1 CDS Sama_0133 NC_008700.1 150362 151033 D KEGG: pca:Pcar_2395 hypothetical protein; hypothetical protein 150362..151033 Shewanella amazonensis SB2B 4602390 YP_926016.1 CDS Sama_0134 NC_008700.1 151023 151580 D KEGG: pca:Pcar_2394 hypothetical protein; hypothetical protein 151023..151580 Shewanella amazonensis SB2B 4602391 YP_926017.1 CDS Sama_0135 NC_008700.1 151580 152323 D KEGG: pca:Pcar_2393 hypothetical protein; hypothetical protein 151580..152323 Shewanella amazonensis SB2B 4602392 YP_926018.1 CDS Sama_0136 NC_008700.1 152768 153964 D KEGG: son:SO4711 HD domain protein; putative metal dependent phosphohydrolase 152768..153964 Shewanella amazonensis SB2B 4602393 YP_926019.1 CDS Sama_0137 NC_008700.1 153990 154754 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(153990..154754) Shewanella amazonensis SB2B 4602394 YP_926020.1 CDS Sama_0138 NC_008700.1 154760 156001 R KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdopterin biosynthesis MoeA protein complement(154760..156001) Shewanella amazonensis SB2B 4602395 YP_926021.1 CDS Sama_0139 NC_008700.1 156138 157208 R KEGG: sdn:Sden_3429 secretion protein HlyD; secretion protein HlyD complement(156138..157208) Shewanella amazonensis SB2B 4602396 YP_926022.1 CDS Sama_0140 NC_008700.1 157205 160285 R KEGG: sdn:Sden_3430 acriflavin resistance protein; acriflavin resistance protein complement(157205..160285) Shewanella amazonensis SB2B 4602397 YP_926023.1 CDS Sama_0141 NC_008700.1 160498 161025 D KEGG: son:SO0139 ferritin; ferritin 160498..161025 Shewanella amazonensis SB2B 4602398 YP_926024.1 CDS Sama_0142 NC_008700.1 161067 164276 R KEGG: son:SO0141 sensory box protein; sensory box protein complement(161067..164276) Shewanella amazonensis SB2B 4602399 YP_926025.1 CDS Sama_0143 NC_008700.1 164603 165271 R KEGG: son:SO0142 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(164603..165271) Shewanella amazonensis SB2B 4602400 YP_926026.1 CDS Sama_0144 NC_008700.1 165836 167947 D KEGG: son:SO0144 protease II; oligopeptidase B 165836..167947 Shewanella amazonensis SB2B 4602401 YP_926027.1 CDS Sama_0145 NC_008700.1 167944 168264 D KEGG: son:SO0145 hypothetical URI domain endonuclease; endonuclease 167944..168264 Shewanella amazonensis SB2B 4602402 YP_926028.1 CDS Sama_0146 NC_008700.1 168261 168920 D KEGG: cps:CPS_1865 DNA-binding response regulator; response regulator receiver protein 168261..168920 Shewanella amazonensis SB2B 4602403 YP_926029.1 CDS Sama_0147 NC_008700.1 168917 170131 D KEGG: cps:CPS_1866 sensor histidine kinase; signal transduction histidine kinase-like protein 168917..170131 Shewanella amazonensis SB2B 4602404 YP_926030.1 CDS Sama_0148 NC_008700.1 170186 170986 D KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; hypothetical protein 170186..170986 Shewanella amazonensis SB2B 4602405 YP_926031.1 CDS Sama_0149 NC_008700.1 171444 172322 D KEGG: sdn:Sden_0116 hypothetical protein; hypothetical protein 171444..172322 Shewanella amazonensis SB2B 4602406 YP_926032.1 CDS Sama_0150 NC_008700.1 172620 173411 D KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 172620..173411 Shewanella amazonensis SB2B 4602407 YP_926033.1 CDS Sama_0151 NC_008700.1 173735 178651 D KEGG: son:SO4539 serine protease, subtilase family; serine protease 173735..178651 Shewanella amazonensis SB2B 4602408 YP_926034.1 CDS Sama_0152 NC_008700.1 178728 179651 D KEGG: pha:PSHAa0851 MltA-interacting MipA ; signal peptide; hypothetical protein 178728..179651 Shewanella amazonensis SB2B 4602409 YP_926035.1 CDS Sama_0153 NC_008700.1 179654 180034 D KEGG: cps:CPS_1424 hypothetical protein; hypothetical protein 179654..180034 Shewanella amazonensis SB2B 4602410 YP_926036.1 CDS Sama_0154 NC_008700.1 180034 180747 D KEGG: sde:Sde_0550 two component transcriptional regulator, winged helix family; response regulator receiver protein 180034..180747 Shewanella amazonensis SB2B 4602411 YP_926037.1 CDS Sama_0155 NC_008700.1 180750 181979 D KEGG: pae:PA1158 probable two-component sensor; signal transduction histidine kinase-like protein 180750..181979 Shewanella amazonensis SB2B 4602412 YP_926038.1 CDS Sama_0156 NC_008700.1 182293 185619 D KEGG: cpf:CPF_1301 glycosyl hydrolase, family 31/fibronectin type III domain protein; glycosyl hydrolase family protein 182293..185619 Shewanella amazonensis SB2B 4602413 YP_926039.1 CDS Sama_0157 NC_008700.1 185703 186641 R KEGG: mxa:MXAN_7313 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(185703..186641) Shewanella amazonensis SB2B 4602414 YP_926040.1 CDS Sama_0158 NC_008700.1 186759 187667 D KEGG: mxa:MXAN_7312 transcriptional regulator, LysR family; LysR family transcriptional regulator 186759..187667 Shewanella amazonensis SB2B 4602415 YP_926041.1 CDS Sama_0159 NC_008700.1 187894 188409 D KEGG: cvi:CV4280 hypothetical protein; hypothetical protein 187894..188409 Shewanella amazonensis SB2B 4602416 YP_926042.1 CDS Sama_0160 NC_008700.1 188547 190193 D KEGG: cps:CPS_3206 glutamate synthase domain protein; glutamate synthase domain-containing protein 188547..190193 Shewanella amazonensis SB2B 4602417 YP_926043.1 CDS Sama_0161 NC_008700.1 190244 192076 R KEGG: son:SO0152 hypothetical carboxypeptidase; carboxypeptidase complement(190244..192076) Shewanella amazonensis SB2B 4602418 YP_926044.1 CDS Sama_0162 NC_008700.1 192484 192888 R KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(192484..192888) Shewanella amazonensis SB2B 4602419 YP_926045.1 CDS Sama_0163 NC_008700.1 193206 193613 R KEGG: hch:HCH_05473 hypothetical protein; hypothetical protein complement(193206..193613) Shewanella amazonensis SB2B 4602420 YP_926046.1 CDS Sama_0165 NC_008700.1 193980 195521 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(193980..195521) Shewanella amazonensis SB2B 4606033 YP_926047.1 CDS hslO NC_008700.1 195721 196605 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(195721..196605) Shewanella amazonensis SB2B 4602422 YP_926048.1 CDS Sama_0167 NC_008700.1 196621 197025 R KEGG: son:SO0164 heat shock protein 15; heat shock protein 15 complement(196621..197025) Shewanella amazonensis SB2B 4602423 YP_926049.1 CDS Sama_0168 NC_008700.1 197297 198220 D KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 197297..198220 Shewanella amazonensis SB2B 4602424 YP_926050.1 CDS Sama_0169 NC_008700.1 198247 200358 D KEGG: sdn:Sden_0121 type II and III secretion system protein; type II and III secretion system protein 198247..200358 Shewanella amazonensis SB2B 4602425 YP_926051.1 CDS Sama_0170 NC_008700.1 200369 201931 D KEGG: son:SO0167 general secretion pathway protein E; general secretion pathway protein E 200369..201931 Shewanella amazonensis SB2B 4602426 YP_926052.1 CDS Sama_0171 NC_008700.1 201935 203158 D KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 201935..203158 Shewanella amazonensis SB2B 4602427 YP_926053.1 CDS Sama_0172 NC_008700.1 203196 203627 D KEGG: son:SO0169 general secretion pathway protein G; general secretion pathway protein G 203196..203627 Shewanella amazonensis SB2B 4602428 YP_926054.1 CDS Sama_0173 NC_008700.1 203640 204209 D KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 203640..204209 Shewanella amazonensis SB2B 4602429 YP_926055.1 CDS Sama_0174 NC_008700.1 204232 204597 D KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 204232..204597 Shewanella amazonensis SB2B 4602430 YP_926056.1 CDS Sama_0175 NC_008700.1 204578 205357 D KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 204578..205357 Shewanella amazonensis SB2B 4602431 YP_926057.1 CDS Sama_0176 NC_008700.1 205357 206331 D KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 205357..206331 Shewanella amazonensis SB2B 4602432 YP_926058.1 CDS Sama_0177 NC_008700.1 206384 207580 D KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 206384..207580 Shewanella amazonensis SB2B 4602433 YP_926059.1 CDS Sama_0178 NC_008700.1 207582 208058 D KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway protein M 207582..208058 Shewanella amazonensis SB2B 4602434 YP_926060.1 CDS Sama_0179 NC_008700.1 208078 208833 D KEGG: son:SO0176 general secretion pathway protein N; general secretion pathway protein N 208078..208833 Shewanella amazonensis SB2B 4602435 YP_926061.1 CDS Sama_0180 NC_008700.1 208875 209603 R hypothetical protein complement(208875..209603) Shewanella amazonensis SB2B 4602436 YP_926062.1 CDS Sama_0181 NC_008700.1 209665 210438 R hypothetical protein complement(209665..210438) Shewanella amazonensis SB2B 4602437 YP_926063.1 CDS Sama_0182 NC_008700.1 210514 211221 R KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; HAD family hydrolase complement(210514..211221) Shewanella amazonensis SB2B 4602438 YP_926064.1 CDS nudE NC_008700.1 211253 211804 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 211253..211804 Shewanella amazonensis SB2B 4602439 YP_926065.1 CDS Sama_0184 NC_008700.1 211849 212661 D KEGG: son:SO0191 cysQ protein; cysQ protein 211849..212661 Shewanella amazonensis SB2B 4602440 YP_926066.1 CDS Sama_0185 NC_008700.1 212648 213085 D KEGG: cvi:CV0908 probable acetyltransferase; putative acetyltransferase 212648..213085 Shewanella amazonensis SB2B 4602441 YP_926067.1 CDS Sama_0186 NC_008700.1 213204 213869 D KEGG: son:SO0193 transcriptional regulator, TetR family; TetR family transcriptional regulator 213204..213869 Shewanella amazonensis SB2B 4602442 YP_926068.1 CDS Sama_0187 NC_008700.1 213866 215722 D KEGG: son:SO0194 acyltransferase family protein; acyltransferase family protein 213866..215722 Shewanella amazonensis SB2B 4602443 YP_926069.1 CDS Sama_0188 NC_008700.1 215823 217106 D KEGG: sdn:Sden_0226 hypothetical protein; hypothetical protein 215823..217106 Shewanella amazonensis SB2B 4602444 YP_926070.1 CDS Sama_0189 NC_008700.1 217155 218258 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(217155..218258) Shewanella amazonensis SB2B 4602445 YP_926071.1 CDS Sama_0190 NC_008700.1 218255 219313 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(218255..219313) Shewanella amazonensis SB2B 4602446 YP_926072.1 CDS Sama_0191 NC_008700.1 219402 220520 R KEGG: sdn:Sden_0229 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase complement(219402..220520) Shewanella amazonensis SB2B 4602447 YP_926073.1 CDS Sama_0192 NC_008700.1 220651 221265 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 220651..221265 Shewanella amazonensis SB2B 4602448 YP_926074.1 CDS Sama_0193 NC_008700.1 221311 222408 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(221311..222408) Shewanella amazonensis SB2B 4602449 YP_926075.1 CDS Sama_0194 NC_008700.1 222531 223331 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 222531..223331 Shewanella amazonensis SB2B 4602450 YP_926076.1 CDS Sama_0195 NC_008700.1 223340 223795 R KEGG: sdn:Sden_0233 RNA-binding protein; RNA-binding protein complement(223340..223795) Shewanella amazonensis SB2B 4602451 YP_926077.1 CDS murB NC_008700.1 229927 230940 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 229927..230940 Shewanella amazonensis SB2B 4605911 YP_926078.1 CDS Sama_0197 NC_008700.1 230961 231914 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 230961..231914 Shewanella amazonensis SB2B 4602453 YP_926079.1 CDS Sama_0198 NC_008700.1 231976 232923 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(231976..232923) Shewanella amazonensis SB2B 4602454 YP_926080.1 CDS Sama_0199 NC_008700.1 233618 234802 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 233618..234802 Shewanella amazonensis SB2B 4605915 YP_926081.1 CDS secE NC_008700.1 235047 235418 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 235047..235418 Shewanella amazonensis SB2B 4602456 YP_926082.1 CDS Sama_0201 NC_008700.1 235423 235974 D KEGG: son:SO0219 transcription antitermination protein NusG; transcription antitermination protein NusG 235423..235974 Shewanella amazonensis SB2B 4602457 YP_926083.1 CDS rplK NC_008700.1 236098 236526 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 236098..236526 Shewanella amazonensis SB2B 4602458 YP_926084.1 CDS Sama_0203 NC_008700.1 236531 237232 D KEGG: son:SO0221 50S ribosomal protein L1; 50S ribosomal protein L1 236531..237232 Shewanella amazonensis SB2B 4602459 YP_926085.1 CDS rplJ NC_008700.1 237486 237986 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 237486..237986 Shewanella amazonensis SB2B 4602460 YP_926086.1 CDS rplL NC_008700.1 238041 238412 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 238041..238412 Shewanella amazonensis SB2B 4602461 YP_926087.1 CDS rpoB NC_008700.1 238654 242682 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 238654..242682 Shewanella amazonensis SB2B 4602462 YP_926088.1 CDS Sama_0207 NC_008700.1 242768 246982 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 242768..246982 Shewanella amazonensis SB2B 4602463 YP_926089.1 CDS rpsL NC_008700.1 247158 247532 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 247158..247532 Shewanella amazonensis SB2B 4602464 YP_926090.1 CDS Sama_0209 NC_008700.1 247612 248082 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 247612..248082 Shewanella amazonensis SB2B 4602465 YP_926091.1 CDS Sama_0210 NC_008700.1 248164 250260 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 248164..250260 Shewanella amazonensis SB2B 4602466 YP_926092.1 CDS Sama_0211 NC_008700.1 250344 251528 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 250344..251528 Shewanella amazonensis SB2B 4602467 YP_926093.1 CDS rpsJ NC_008700.1 251892 252203 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 251892..252203 Shewanella amazonensis SB2B 4602468 YP_926094.1 CDS rplC NC_008700.1 252232 252870 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 252232..252870 Shewanella amazonensis SB2B 4602469 YP_926095.1 CDS rplD NC_008700.1 252888 253493 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 252888..253493 Shewanella amazonensis SB2B 4602470 YP_926096.1 CDS rplW NC_008700.1 253490 253792 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 253490..253792 Shewanella amazonensis SB2B 4602471 YP_926097.1 CDS rplB NC_008700.1 253804 254628 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 253804..254628 Shewanella amazonensis SB2B 4602472 YP_926098.1 CDS rpsS NC_008700.1 254644 254922 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 254644..254922 Shewanella amazonensis SB2B 4602473 YP_926099.1 CDS rplV NC_008700.1 254938 255270 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 254938..255270 Shewanella amazonensis SB2B 4602474 YP_926100.1 CDS rpsC NC_008700.1 255284 255976 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 255284..255976 Shewanella amazonensis SB2B 4602475 YP_926101.1 CDS rplP NC_008700.1 255988 256398 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 255988..256398 Shewanella amazonensis SB2B 4602476 YP_926102.1 CDS Sama_0221 NC_008700.1 256398 256589 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 256398..256589 Shewanella amazonensis SB2B 4602477 YP_926103.1 CDS Sama_0222 NC_008700.1 256589 256837 D KEGG: son:SO0240 30S ribosomal subunit protein S17; 30S ribosomal protein S17 256589..256837 Shewanella amazonensis SB2B 4602478 YP_926104.1 CDS rplN NC_008700.1 257010 257378 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 257010..257378 Shewanella amazonensis SB2B 4602479 YP_926105.1 CDS rplX NC_008700.1 257390 257704 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 257390..257704 Shewanella amazonensis SB2B 4602480 YP_926106.1 CDS rplE NC_008700.1 257717 258256 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 257717..258256 Shewanella amazonensis SB2B 4602481 YP_926107.1 CDS rpsN NC_008700.1 258268 258573 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 258268..258573 Shewanella amazonensis SB2B 4602482 YP_926108.1 CDS rpsH NC_008700.1 258598 258993 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 258598..258993 Shewanella amazonensis SB2B 4602483 YP_926109.1 CDS rplF NC_008700.1 259004 259537 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 259004..259537 Shewanella amazonensis SB2B 4602484 YP_926110.1 CDS rplR NC_008700.1 259547 259897 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 259547..259897 Shewanella amazonensis SB2B 4602485 YP_926111.1 CDS rpsE NC_008700.1 259911 260417 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 259911..260417 Shewanella amazonensis SB2B 4602486 YP_926112.1 CDS Sama_0231 NC_008700.1 260424 260603 D KEGG: son:SO0249 50S ribosomal protein L30; 50S ribosomal protein L30 260424..260603 Shewanella amazonensis SB2B 4602487 YP_926113.1 CDS rplO NC_008700.1 260606 261040 D late assembly protein; 50S ribosomal protein L15 260606..261040 Shewanella amazonensis SB2B 4602488 YP_926114.1 CDS secY NC_008700.1 261048 262388 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 261048..262388 Shewanella amazonensis SB2B 4602489 YP_926115.1 CDS rpmJ NC_008700.1 262410 262523 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 262410..262523 Shewanella amazonensis SB2B 4602490 YP_926116.1 CDS rpsM NC_008700.1 262638 262994 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 262638..262994 Shewanella amazonensis SB2B 4602491 YP_926117.1 CDS Sama_0236 NC_008700.1 263009 263401 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 263009..263401 Shewanella amazonensis SB2B 4602492 YP_926118.1 CDS rpsD NC_008700.1 263433 264053 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 263433..264053 Shewanella amazonensis SB2B 4602493 YP_926119.1 CDS Sama_0238 NC_008700.1 264078 265067 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 264078..265067 Shewanella amazonensis SB2B 4602494 YP_926120.1 CDS rplQ NC_008700.1 265107 265502 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 265107..265502 Shewanella amazonensis SB2B 4602495 YP_926121.1 CDS Sama_0240 NC_008700.1 265558 266529 R KEGG: vch:VCA0212 hypothetical protein; hypothetical protein complement(265558..266529) Shewanella amazonensis SB2B 4602496 YP_926122.1 CDS Sama_0241 NC_008700.1 266611 267099 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(266611..267099) Shewanella amazonensis SB2B 4602497 YP_926123.1 CDS Sama_0242 NC_008700.1 267096 267296 R KEGG: son:SO0260 heme exporter protein CcmD; heme exporter protein CcmD complement(267096..267296) Shewanella amazonensis SB2B 4602498 YP_926124.1 CDS Sama_0243 NC_008700.1 267296 268042 R KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC complement(267296..268042) Shewanella amazonensis SB2B 4602499 YP_926125.1 CDS Sama_0244 NC_008700.1 268044 268730 R KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB complement(268044..268730) Shewanella amazonensis SB2B 4602500 YP_926126.1 CDS Sama_0245 NC_008700.1 268742 269395 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(268742..269395) Shewanella amazonensis SB2B 4602501 YP_926127.1 CDS Sama_0246 NC_008700.1 269706 269999 D KEGG: son:SO0264 cytochrome c; cytochrome c 269706..269999 Shewanella amazonensis SB2B 4602502 YP_926128.1 CDS Sama_0247 NC_008700.1 270148 271401 R KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; cytochrome c-type biogenesis protein CcmH complement(270148..271401) Shewanella amazonensis SB2B 4602503 YP_926129.1 CDS Sama_0248 NC_008700.1 271790 273766 D KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 271790..273766 Shewanella amazonensis SB2B 4602504 YP_926130.1 CDS Sama_0249 NC_008700.1 273781 274368 D KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; thiol:disulfide interchange protein DsbE 273781..274368 Shewanella amazonensis SB2B 4602505 YP_926131.1 CDS Sama_0250 NC_008700.1 274365 274868 D KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome c-type biogenesis protein CcmH 274365..274868 Shewanella amazonensis SB2B 4602506 YP_926132.1 CDS Sama_0251 NC_008700.1 274865 275446 D KEGG: son:SO0269 thioredoxin, putative; thioredoxin 274865..275446 Shewanella amazonensis SB2B 4602507 YP_926133.1 CDS Sama_0252 NC_008700.1 288026 289300 D KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 288026..289300 Shewanella amazonensis SB2B 4605923 YP_926134.1 CDS Sama_0253 NC_008700.1 289318 289854 R KEGG: son:SO0273 hypothetical protein; hypothetical protein complement(289318..289854) Shewanella amazonensis SB2B 4602509 YP_926135.1 CDS Sama_0254 NC_008700.1 289851 292514 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(289851..292514) Shewanella amazonensis SB2B 4602510 YP_926136.1 CDS Sama_0255 NC_008700.1 292656 293807 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(292656..293807) Shewanella amazonensis SB2B 4602511 YP_926137.1 CDS argC NC_008700.1 294064 295059 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 294064..295059 Shewanella amazonensis SB2B 4602512 YP_926138.1 CDS Sama_0257 NC_008700.1 295075 295863 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 295075..295863 Shewanella amazonensis SB2B 4602513 YP_926139.1 CDS Sama_0258 NC_008700.1 295867 296772 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 295867..296772 Shewanella amazonensis SB2B 4602514 YP_926140.1 CDS Sama_0259 NC_008700.1 296823 298046 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 296823..298046 Shewanella amazonensis SB2B 4602515 YP_926141.1 CDS Sama_0260 NC_008700.1 298127 299497 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 298127..299497 Shewanella amazonensis SB2B 4602516 YP_926142.1 CDS Sama_0261 NC_008700.1 299560 301215 R KEGG: she:Shewmr4_3617 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(299560..301215) Shewanella amazonensis SB2B 4602517 YP_926143.1 CDS Sama_0262 NC_008700.1 301630 302355 R specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase complement(301630..302355) Shewanella amazonensis SB2B 4602518 YP_926144.1 CDS Sama_0263 NC_008700.1 302424 302807 R KEGG: sdn:Sden_3436 YjgF-like protein; zinc carboxypeptidase-like protein complement(302424..302807) Shewanella amazonensis SB2B 4602519 YP_926145.1 CDS Sama_0264 NC_008700.1 302833 304932 R KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(302833..304932) Shewanella amazonensis SB2B 4602520 YP_926146.1 CDS rpoZ NC_008700.1 304957 305235 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(304957..305235) Shewanella amazonensis SB2B 4602521 YP_926147.1 CDS gmk NC_008700.1 305313 305936 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(305313..305936) Shewanella amazonensis SB2B 4602522 YP_926148.1 CDS Sama_0267 NC_008700.1 306124 307608 D KEGG: son:SO0362 hypothetical protein; hypothetical protein 306124..307608 Shewanella amazonensis SB2B 4602523 YP_926149.1 CDS Sama_0268 NC_008700.1 307694 308560 D KEGG: son:SO0363 hypothetical protein; hypothetical protein 307694..308560 Shewanella amazonensis SB2B 4602524 YP_926150.1 CDS Sama_0269 NC_008700.1 308553 309617 D KEGG: son:SO0364 hypothetical protein; hypothetical protein 308553..309617 Shewanella amazonensis SB2B 4602525 YP_926151.1 CDS Sama_0270 NC_008700.1 309700 310467 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 309700..310467 Shewanella amazonensis SB2B 4602526 YP_926152.1 CDS Sama_0271 NC_008700.1 310551 312026 D KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; hypothetical protein 310551..312026 Shewanella amazonensis SB2B 4602527 YP_926153.1 CDS Sama_0272 NC_008700.1 312099 314450 R KEGG: vfi:VF1123 hypothetical protein; hypothetical protein complement(312099..314450) Shewanella amazonensis SB2B 4602528 YP_926154.1 CDS Sama_0273 NC_008700.1 314648 315343 R KEGG: son:SO0366 hypothetical protein; hypothetical protein complement(314648..315343) Shewanella amazonensis SB2B 4602529 YP_926155.1 CDS Sama_0274 NC_008700.1 315340 316263 R KEGG: vpa:VPA0175 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(315340..316263) Shewanella amazonensis SB2B 4602530 YP_926156.1 CDS Sama_0275 NC_008700.1 316580 317083 D KEGG: sdn:Sden_2365 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 316580..317083 Shewanella amazonensis SB2B 4602531 YP_926157.1 CDS Sama_0276 NC_008700.1 318764 321673 D KEGG: vvy:VV0561 RNA polymerase sigma factor RpoD; DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein 318764..321673 Shewanella amazonensis SB2B 4602532 YP_926158.1 CDS Sama_0277 NC_008700.1 321736 323187 D KEGG: rfr:Rfer_3071 hypothetical protein; hypothetical protein 321736..323187 Shewanella amazonensis SB2B 4602533 YP_926159.1 CDS Sama_0278 NC_008700.1 323201 326056 D KEGG: rfr:Rfer_3072 endonuclease; endonuclease 323201..326056 Shewanella amazonensis SB2B 4602534 YP_926160.1 CDS Sama_0279 NC_008700.1 326037 327053 D KEGG: rfr:Rfer_3073 hypothetical protein; hypothetical protein 326037..327053 Shewanella amazonensis SB2B 4602535 YP_926161.1 CDS Sama_0280 NC_008700.1 327046 328854 D KEGG: rfr:Rfer_3074 hypothetical protein; hypothetical protein 327046..328854 Shewanella amazonensis SB2B 4602536 YP_926162.1 CDS Sama_0281 NC_008700.1 328984 330546 D KEGG: eba:ebA6339 modification methylase (cytosine-specific methyltransferase; modification methylase 328984..330546 Shewanella amazonensis SB2B 4602537 YP_926163.1 CDS Sama_0282 NC_008700.1 330536 331021 D KEGG: ret:RHE_PF00110 probable DNA mismatch endonuclease protein; putative DNA mismatch endonuclease protein 330536..331021 Shewanella amazonensis SB2B 4602538 YP_926164.1 CDS Sama_0283 NC_008700.1 331047 331655 R KEGG: pha:PSHAa0301 hypothetical protein; hypothetical protein complement(331047..331655) Shewanella amazonensis SB2B 4602539 YP_926165.1 CDS Sama_0284 NC_008700.1 331946 333379 D KEGG: noc:Noc_2711 sodium/alanine symporter; sodium/alanine symporter 331946..333379 Shewanella amazonensis SB2B 4602540 YP_926166.1 CDS Sama_0285 NC_008700.1 333460 334149 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 333460..334149 Shewanella amazonensis SB2B 4602541 YP_926167.1 CDS Sama_0286 NC_008700.1 334406 337336 D KEGG: pat:Patl_1940 TonB-dependent receptor; TonB-dependent receptor 334406..337336 Shewanella amazonensis SB2B 4602542 YP_926168.1 CDS Sama_0287 NC_008700.1 337389 341714 D KEGG: pat:Patl_1941 alpha-1,6-glucosidases, pullulanase-type; alpha-1,6-glucosidase, pullulanase-type 337389..341714 Shewanella amazonensis SB2B 4602543 YP_926169.1 CDS Sama_0288 NC_008700.1 341766 343988 R KEGG: pat:Patl_0116 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase complement(341766..343988) Shewanella amazonensis SB2B 4602544 YP_926170.1 CDS Sama_0289 NC_008700.1 343985 346240 R KEGG: pat:Patl_0117 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase complement(343985..346240) Shewanella amazonensis SB2B 4602545 YP_926171.1 CDS Sama_0290 NC_008700.1 346298 347485 R KEGG: pat:Patl_0118 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase complement(346298..347485) Shewanella amazonensis SB2B 4602546 YP_926172.1 CDS Sama_0291 NC_008700.1 347482 348495 R KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; carbohydrate kinase complement(347482..348495) Shewanella amazonensis SB2B 4602547 YP_926173.1 CDS Sama_0292 NC_008700.1 348492 349661 R KEGG: pat:Patl_0119 glucose/galactose transporter; glucose/galactose transporter complement(348492..349661) Shewanella amazonensis SB2B 4602548 YP_926174.1 CDS Sama_0293 NC_008700.1 349772 352120 R KEGG: pat:Patl_0120 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase complement(349772..352120) Shewanella amazonensis SB2B 4602549 YP_926175.1 CDS Sama_0294 NC_008700.1 352411 353418 D KEGG: pat:Patl_0121 transcriptional regulator, LacI family; LacI family transcriptional regulator 352411..353418 Shewanella amazonensis SB2B 4602550 YP_926176.1 CDS Sama_0295 NC_008700.1 353746 356640 D KEGG: pat:Patl_0122 TonB-dependent receptor; TonB-dependent receptor 353746..356640 Shewanella amazonensis SB2B 4602551 YP_926177.1 CDS Sama_0296 NC_008700.1 356690 359554 D KEGG: pat:Patl_0123 coagulation factor 5/8 type-like; coagulation factor 5/8 type protein 356690..359554 Shewanella amazonensis SB2B 4602552 YP_926178.1 CDS Sama_0297 NC_008700.1 359770 360816 D KEGG: bth:BT3862 endo-alpha-mannosidase; endo-alpha-mannosidase 359770..360816 Shewanella amazonensis SB2B 4602553 YP_926179.1 CDS Sama_0298 NC_008700.1 360831 361814 D KEGG: pat:Patl_0124 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 360831..361814 Shewanella amazonensis SB2B 4602554 YP_926180.1 CDS Sama_0299 NC_008700.1 361818 362783 D KEGG: pat:Patl_0125 twin-arginine translocation pathway signal; asparaginase 361818..362783 Shewanella amazonensis SB2B 4602555 YP_926181.1 CDS Sama_0300 NC_008700.1 362780 364558 D KEGG: pat:Patl_0126 glycoside hydrolase, family 85; glycoside hydrolase 362780..364558 Shewanella amazonensis SB2B 4602556 YP_926182.1 CDS Sama_0301 NC_008700.1 364555 365352 D KEGG: pat:Patl_0127 CutC; CutC protein 364555..365352 Shewanella amazonensis SB2B 4602557 YP_926183.1 CDS Sama_0302 NC_008700.1 365361 367952 D KEGG: pat:Patl_0128 glycoside hydrolase family 2, sugar binding; glycoside hydrolase 365361..367952 Shewanella amazonensis SB2B 4602558 YP_926184.1 CDS Sama_0303 NC_008700.1 367949 369739 D KEGG: pat:Patl_0129 Na+/solute symporter; Na+/solute symporter 367949..369739 Shewanella amazonensis SB2B 4602559 YP_926185.1 CDS Sama_0304 NC_008700.1 369739 372060 D KEGG: pat:Patl_0130 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 369739..372060 Shewanella amazonensis SB2B 4602560 YP_926186.1 CDS Sama_0305 NC_008700.1 373058 373450 D KEGG: pha:PSHAa2108 hypothetical protein; hypothetical protein 373058..373450 Shewanella amazonensis SB2B 4602561 YP_926187.1 CDS Sama_0306 NC_008700.1 373545 373943 D KEGG: pha:PSHAa2108 hypothetical protein; hypothetical protein 373545..373943 Shewanella amazonensis SB2B 4602562 YP_926188.1 CDS Sama_0307 NC_008700.1 374308 374574 D hypothetical protein 374308..374574 Shewanella amazonensis SB2B 4602563 YP_926189.1 CDS Sama_0308 NC_008700.1 374607 375368 R KEGG: hch:HCH_00937 predicted phosphoesterases, related to the Icc protein; phosphoesterase, related to the Icc protein complement(374607..375368) Shewanella amazonensis SB2B 4602564 YP_926190.1 CDS Sama_0309 NC_008700.1 375449 375751 R KEGG: rfe:RF_0935 hypothetical protein; hypothetical protein complement(375449..375751) Shewanella amazonensis SB2B 4602565 YP_926191.1 CDS Sama_0310 NC_008700.1 375859 376374 R KEGG: ana:all3160 hypothetical protein; hypothetical protein complement(375859..376374) Shewanella amazonensis SB2B 4602566 YP_926192.1 CDS Sama_0311 NC_008700.1 376741 377334 R KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein complement(376741..377334) Shewanella amazonensis SB2B 4602567 YP_926193.1 CDS Sama_0312 NC_008700.1 377512 378216 R KEGG: ddi:DDB0204614 hypothetical protein; hypothetical protein complement(377512..378216) Shewanella amazonensis SB2B 4602568 YP_926194.1 CDS Sama_0313 NC_008700.1 378604 379386 R KEGG: noc:Noc_0649 DNA topoisomerase I; DNA topoisomerase I complement(378604..379386) Shewanella amazonensis SB2B 4602569 YP_926195.1 CDS Sama_0314 NC_008700.1 379556 379834 R hypothetical protein complement(379556..379834) Shewanella amazonensis SB2B 4602570 YP_926196.1 CDS Sama_0315 NC_008700.1 380381 380974 R KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein complement(380381..380974) Shewanella amazonensis SB2B 4602571 YP_926197.1 CDS Sama_0316 NC_008700.1 381108 381935 R KEGG: nha:Nham_0324 hypothetical protein; hypothetical protein complement(381108..381935) Shewanella amazonensis SB2B 4602572 YP_926198.1 CDS Sama_0317 NC_008700.1 383200 384138 R KEGG: pha:PSHAa2104 hypothetical protein; hypothetical protein complement(383200..384138) Shewanella amazonensis SB2B 4602573 YP_926199.1 CDS Sama_0318 NC_008700.1 384813 386360 R KEGG: sdn:Sden_0317 phage integrase; hypothetical protein complement(384813..386360) Shewanella amazonensis SB2B 4602574 YP_926200.1 CDS Sama_0319 NC_008700.1 386521 387450 R KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein complement(386521..387450) Shewanella amazonensis SB2B 4602575 YP_926201.1 CDS rph NC_008700.1 387592 388305 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 387592..388305 Shewanella amazonensis SB2B 4602576 YP_926202.1 CDS pyrE NC_008700.1 388412 389053 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 388412..389053 Shewanella amazonensis SB2B 4602577 YP_926203.1 CDS folE NC_008700.1 389155 389805 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(389155..389805) Shewanella amazonensis SB2B 4602578 YP_926204.1 CDS Sama_0323 NC_008700.1 389988 391937 R KEGG: son:SO4252 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein complement(389988..391937) Shewanella amazonensis SB2B 4602579 YP_926205.1 CDS slmA NC_008700.1 392054 392647 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(392054..392647) Shewanella amazonensis SB2B 4602580 YP_926206.1 CDS dut NC_008700.1 392676 393134 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(392676..393134) Shewanella amazonensis SB2B 4602581 YP_926207.1 CDS Sama_0326 NC_008700.1 393131 394384 R KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase complement(393131..394384) Shewanella amazonensis SB2B 4602582 YP_926208.1 CDS radC NC_008700.1 394468 395145 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 394468..395145 Shewanella amazonensis SB2B 4602583 YP_926209.1 CDS rpmB NC_008700.1 395265 395501 D required for 70S ribosome assembly; 50S ribosomal protein L28 395265..395501 Shewanella amazonensis SB2B 4602584 YP_926210.1 CDS rpmG NC_008700.1 395508 395681 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 395508..395681 Shewanella amazonensis SB2B 4602585 YP_926211.1 CDS Sama_0330 NC_008700.1 395962 397284 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 395962..397284 Shewanella amazonensis SB2B 4602586 YP_926212.1 CDS Sama_0331 NC_008700.1 397426 397959 D KEGG: son:SO4244 hypothetical protein; hypothetical protein 397426..397959 Shewanella amazonensis SB2B 4602587 YP_926213.1 CDS Sama_0332 NC_008700.1 398114 398995 R KEGG: son:SO4243 rarD protein; rarD protein complement(398114..398995) Shewanella amazonensis SB2B 4602588 YP_926214.1 CDS Sama_0333 NC_008700.1 399235 401058 D KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 399235..401058 Shewanella amazonensis SB2B 4602589 YP_926215.1 CDS Sama_0334 NC_008700.1 401045 402787 R KEGG: sdn:Sden_0333 tetratricopeptide TPR_2; hypothetical protein complement(401045..402787) Shewanella amazonensis SB2B 4602590 YP_926216.1 CDS Sama_0335 NC_008700.1 403271 404839 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 403271..404839 Shewanella amazonensis SB2B 4602591 YP_926217.1 CDS Sama_0336 NC_008700.1 404914 406008 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 404914..406008 Shewanella amazonensis SB2B 4602592 YP_926218.1 CDS Sama_0337 NC_008700.1 406008 407420 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 406008..407420 Shewanella amazonensis SB2B 4602593 YP_926219.1 CDS leuD NC_008700.1 407423 408028 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 407423..408028 Shewanella amazonensis SB2B 4602594 YP_926220.1 CDS Sama_0339 NC_008700.1 408539 409897 D KEGG: sdn:Sden_0340 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 408539..409897 Shewanella amazonensis SB2B 4602595 YP_926221.1 CDS Sama_0340 NC_008700.1 410025 410489 D KEGG: sdn:Sden_0341 hypothetical protein; hypothetical protein 410025..410489 Shewanella amazonensis SB2B 4602596 YP_926222.1 CDS Sama_0341 NC_008700.1 410502 411989 D KEGG: son:SO4230 glycerol kinase; glycerol kinase 410502..411989 Shewanella amazonensis SB2B 4602597 YP_926223.1 CDS Sama_0342 NC_008700.1 412014 412310 R KEGG: son:SO4229 hypothetical protein; hypothetical protein complement(412014..412310) Shewanella amazonensis SB2B 4602598 YP_926224.1 CDS Sama_0343 NC_008700.1 412338 413378 R KEGG: sdn:Sden_0344 ferredoxin; ferredoxin complement(412338..413378) Shewanella amazonensis SB2B 4602599 YP_926225.1 CDS Sama_0344 NC_008700.1 413375 414091 R KEGG: sdn:Sden_0345 PepSY-associated TM helix; PepSY-associated TM helix family protein complement(413375..414091) Shewanella amazonensis SB2B 4602600 YP_926226.1 CDS Sama_0345 NC_008700.1 414446 414904 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 414446..414904 Shewanella amazonensis SB2B 4602601 YP_926227.1 CDS mraW NC_008700.1 414936 415877 D KEGG: sdn:Sden_0347 methyltransferase; S-adenosyl-methyltransferase MraW 414936..415877 Shewanella amazonensis SB2B 4602602 YP_926228.1 CDS Sama_0347 NC_008700.1 415888 416199 D KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL 415888..416199 Shewanella amazonensis SB2B 4602603 YP_926229.1 CDS Sama_0348 NC_008700.1 416196 417932 D KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 416196..417932 Shewanella amazonensis SB2B 4602604 YP_926230.1 CDS murE NC_008700.1 417929 419392 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 417929..419392 Shewanella amazonensis SB2B 4602605 YP_926231.1 CDS Sama_0350 NC_008700.1 419389 420756 D KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 419389..420756 Shewanella amazonensis SB2B 4602606 YP_926232.1 CDS mraY NC_008700.1 420757 421839 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 420757..421839 Shewanella amazonensis SB2B 4602607 YP_926233.1 CDS murD NC_008700.1 421842 423173 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 421842..423173 Shewanella amazonensis SB2B 4602608 YP_926234.1 CDS Sama_0353 NC_008700.1 423163 424371 D KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 423163..424371 Shewanella amazonensis SB2B 4602609 YP_926235.1 CDS murG NC_008700.1 424372 425454 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 424372..425454 Shewanella amazonensis SB2B 4602610 YP_926236.1 CDS murC NC_008700.1 425464 426918 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 425464..426918 Shewanella amazonensis SB2B 4602611 YP_926237.1 CDS Sama_0356 NC_008700.1 427031 427855 D KEGG: sdn:Sden_0357 cell division protein FtsQ; cell division protein FtsQ 427031..427855 Shewanella amazonensis SB2B 4602612 YP_926238.1 CDS Sama_0357 NC_008700.1 427859 429094 D KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA 427859..429094 Shewanella amazonensis SB2B 4602613 YP_926239.1 CDS Sama_0358 NC_008700.1 429123 430307 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 429123..430307 Shewanella amazonensis SB2B 4602614 YP_926240.1 CDS lpxC NC_008700.1 430462 431382 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 430462..431382 Shewanella amazonensis SB2B 4602615 YP_926241.1 CDS Sama_0360 NC_008700.1 431399 431851 R KEGG: sdn:Sden_0361 hypothetical protein; hypothetical protein complement(431399..431851) Shewanella amazonensis SB2B 4602616 YP_926242.1 CDS Sama_0361 NC_008700.1 431879 432778 D KEGG: sdn:Sden_0362 peptidase M23B; peptidase M23B 431879..432778 Shewanella amazonensis SB2B 4602617 YP_926243.1 CDS Sama_0362 NC_008700.1 432836 435562 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 432836..435562 Shewanella amazonensis SB2B 4602618 YP_926244.1 CDS Sama_0363 NC_008700.1 441876 442271 R KEGG: sdn:Sden_3395 mutator MutT protein; mutator MutT protein complement(441876..442271) Shewanella amazonensis SB2B 4605931 YP_926245.1 CDS Sama_0364 NC_008700.1 442313 442528 R KEGG: son:SO0411 hypothetical protein; hypothetical protein complement(442313..442528) Shewanella amazonensis SB2B 4602620 YP_926246.1 CDS Sama_0365 NC_008700.1 442590 443324 R KEGG: son:SO0412 hypothetical protein; hypothetical protein complement(442590..443324) Shewanella amazonensis SB2B 4602621 YP_926247.1 CDS coaE NC_008700.1 443317 443934 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(443317..443934) Shewanella amazonensis SB2B 4602622 YP_926248.1 CDS Sama_0367 NC_008700.1 443934 444848 R KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase complement(443934..444848) Shewanella amazonensis SB2B 4602623 YP_926249.1 CDS Sama_0368 NC_008700.1 444884 446143 R KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type IV pilus biogenesis protein PilC complement(444884..446143) Shewanella amazonensis SB2B 4602624 YP_926250.1 CDS Sama_0369 NC_008700.1 446213 447919 R KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV pilus biogenesis protein PilB complement(446213..447919) Shewanella amazonensis SB2B 4602625 YP_926251.1 CDS Sama_0370 NC_008700.1 447973 448446 R KEGG: pat:Patl_3344 prepilin-type cleavage/methylation; prepilin-type cleavage/methylation protein complement(447973..448446) Shewanella amazonensis SB2B 4602626 YP_926252.1 CDS Sama_0371 NC_008700.1 450088 450945 R KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide diphosphorylase complement(450088..450945) Shewanella amazonensis SB2B 4602627 YP_926253.1 CDS Sama_0372 NC_008700.1 451281 451853 D KEGG: sdn:Sden_3386 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 451281..451853 Shewanella amazonensis SB2B 4602628 YP_926254.1 CDS Sama_0373 NC_008700.1 451931 452791 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 451931..452791 Shewanella amazonensis SB2B 4602629 YP_926255.1 CDS pdhR NC_008700.1 452998 453750 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 452998..453750 Shewanella amazonensis SB2B 4602630 YP_926256.1 CDS aceE NC_008700.1 453823 456519 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 453823..456519 Shewanella amazonensis SB2B 4602631 YP_926257.1 CDS aceF NC_008700.1 456531 458459 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 456531..458459 Shewanella amazonensis SB2B 4602632 YP_926258.1 CDS Sama_0377 NC_008700.1 458630 460060 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 458630..460060 Shewanella amazonensis SB2B 4602633 YP_926259.1 CDS Sama_0378 NC_008700.1 460211 464686 D KEGG: son:SO0427 sensory box protein; sensory box protein 460211..464686 Shewanella amazonensis SB2B 4602634 YP_926260.1 CDS Sama_0379 NC_008700.1 464790 466994 D KEGG: son:SO0428 hypothetical protein; hypothetical protein 464790..466994 Shewanella amazonensis SB2B 4602635 YP_926261.1 CDS Sama_0380 NC_008700.1 467111 469171 D KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 467111..469171 Shewanella amazonensis SB2B 4602636 YP_926262.1 CDS Sama_0381 NC_008700.1 469245 469910 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(469245..469910) Shewanella amazonensis SB2B 4602637 YP_926263.1 CDS Sama_0382 NC_008700.1 470282 472879 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 470282..472879 Shewanella amazonensis SB2B 4602638 YP_926264.1 CDS Sama_0383 NC_008700.1 474348 475742 R KEGG: vch:VC1407 ATP-dependent RNA helicase RhlE; ATP-dependent RNA helicase RhlE complement(474348..475742) Shewanella amazonensis SB2B 4602639 YP_926265.1 CDS Sama_0384 NC_008700.1 476412 477074 R KEGG: sdn:Sden_0778 hypothetical protein; hypothetical protein complement(476412..477074) Shewanella amazonensis SB2B 4602640 YP_926266.1 CDS Sama_0385 NC_008700.1 477268 477888 R KEGG: rfr:Rfer_3267 glutathione S-transferase-like; glutathione S-transferase-like protein complement(477268..477888) Shewanella amazonensis SB2B 4602641 YP_926267.1 CDS Sama_0386 NC_008700.1 478075 478539 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(478075..478539) Shewanella amazonensis SB2B 4602642 YP_926268.1 CDS hemE NC_008700.1 478996 480060 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 478996..480060 Shewanella amazonensis SB2B 4602643 YP_926269.1 CDS Sama_0388 NC_008700.1 480564 483077 D KEGG: son:SO0437 sensory box protein; putative diguanylate phosphodiesterase 480564..483077 Shewanella amazonensis SB2B 4602644 YP_926270.1 CDS Sama_0389 NC_008700.1 483150 483962 D KEGG: son:SO0438 short chain dehydrogenase; short chain dehydrogenase 483150..483962 Shewanella amazonensis SB2B 4602645 YP_926271.1 CDS Sama_0390 NC_008700.1 484031 484270 R KEGG: son:SO0440 hypothetical protein; hypothetical protein complement(484031..484270) Shewanella amazonensis SB2B 4602646 YP_926272.1 CDS Sama_0391 NC_008700.1 484927 485916 D hypothetical protein 484927..485916 Shewanella amazonensis SB2B 4602647 YP_926273.1 CDS Sama_0393 NC_008700.1 486460 489684 R KEGG: son:SO0440 hypothetical protein; hypothetical protein complement(486460..489684) Shewanella amazonensis SB2B 4606034 YP_926274.1 CDS Sama_0394 NC_008700.1 489862 491157 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(489862..491157) Shewanella amazonensis SB2B 4602649 YP_926275.1 CDS purH NC_008700.1 491215 492804 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(491215..492804) Shewanella amazonensis SB2B 4602650 YP_926276.1 CDS zntR NC_008700.1 493097 493630 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 493097..493630 Shewanella amazonensis SB2B 4602651 YP_926277.1 CDS Sama_0397 NC_008700.1 493621 495093 D KEGG: son:SO0444 hypothetical protein; hypothetical protein 493621..495093 Shewanella amazonensis SB2B 4602652 YP_926278.1 CDS Sama_0398 NC_008700.1 495289 497262 D KEGG: pha:PSHAa1953 peptidase; peptidase 495289..497262 Shewanella amazonensis SB2B 4602653 YP_926279.1 CDS Sama_0399 NC_008700.1 497294 497620 D hypothetical protein 497294..497620 Shewanella amazonensis SB2B 4602654 YP_926280.1 CDS Sama_0400 NC_008700.1 497645 498667 R KEGG: vpa:VP0375 putative lipoprotein; putative lipoprotein complement(497645..498667) Shewanella amazonensis SB2B 4602655 YP_926281.1 CDS Sama_0401 NC_008700.1 498804 499745 R KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(498804..499745) Shewanella amazonensis SB2B 4602656 YP_926282.1 CDS Sama_0402 NC_008700.1 499845 500891 D KEGG: son:SO0524 HlyD family secretion protein; HlyD family secretion protein 499845..500891 Shewanella amazonensis SB2B 4602657 YP_926283.1 CDS Sama_0403 NC_008700.1 500902 502491 D KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA subfamily drug resistance transporter 500902..502491 Shewanella amazonensis SB2B 4602658 YP_926284.1 CDS Sama_0404 NC_008700.1 502603 503061 D KEGG: son:SO0526 acetyltransferase, GNAT family; acetyltransferase 502603..503061 Shewanella amazonensis SB2B 4602659 YP_926285.1 CDS Sama_0405 NC_008700.1 503066 503383 D KEGG: son:SO0527 hypothetical protein; hypothetical protein 503066..503383 Shewanella amazonensis SB2B 4602660 YP_926286.1 CDS Sama_0406 NC_008700.1 503482 503736 R KEGG: cps:CPS_4118 hypothetical protein; hypothetical protein complement(503482..503736) Shewanella amazonensis SB2B 4602661 YP_926287.1 CDS Sama_0407 NC_008700.1 503863 504747 D KEGG: son:SO0528 hypothetical protein; hypothetical protein 503863..504747 Shewanella amazonensis SB2B 4602662 YP_926288.1 CDS Sama_0408 NC_008700.1 504775 505623 R KEGG: pca:Pcar_0306 hypothetical protein; hypothetical protein complement(504775..505623) Shewanella amazonensis SB2B 4602663 YP_926289.1 CDS Sama_0409 NC_008700.1 505765 506538 R KEGG: yps:YPTB3403 hypothetical protein; hypothetical protein complement(505765..506538) Shewanella amazonensis SB2B 4602664 YP_926290.1 CDS Sama_0410 NC_008700.1 506845 508020 D KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; ornithine decarboxylase 506845..508020 Shewanella amazonensis SB2B 4602665 YP_926291.1 CDS Sama_0411 NC_008700.1 508106 508321 R KEGG: son:SO4134 hypothetical protein; hypothetical protein complement(508106..508321) Shewanella amazonensis SB2B 4602666 YP_926292.1 CDS Sama_0412 NC_008700.1 508759 509517 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 508759..509517 Shewanella amazonensis SB2B 4602667 YP_926293.1 CDS Sama_0413 NC_008700.1 509575 510327 R KEGG: son:SO4131 hypothetical protein; hypothetical protein complement(509575..510327) Shewanella amazonensis SB2B 4602668 YP_926294.1 CDS Sama_0414 NC_008700.1 510724 511191 D KEGG: sdn:Sden_3072 protein of unknown function DUF107; hypothetical protein 510724..511191 Shewanella amazonensis SB2B 4602669 YP_926295.1 CDS Sama_0415 NC_008700.1 511210 512124 D KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 511210..512124 Shewanella amazonensis SB2B 4602670 YP_926296.1 CDS Sama_0416 NC_008700.1 512137 513069 D KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 512137..513069 Shewanella amazonensis SB2B 4602671 YP_926297.1 CDS Sama_0417 NC_008700.1 513399 514343 D KEGG: mes:Meso_0624 homocysteine S-methyltransferase; homocysteine S-methyltransferase 513399..514343 Shewanella amazonensis SB2B 4602672 YP_926298.1 CDS Sama_0418 NC_008700.1 514689 515582 R KEGG: bja:blr0877 two-component response regulator; putative transcriptional regulator CadC complement(514689..515582) Shewanella amazonensis SB2B 4602673 YP_926299.1 CDS uvrD NC_008700.1 515732 517897 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 515732..517897 Shewanella amazonensis SB2B 4602674 YP_926300.1 CDS ubiA NC_008700.1 517977 518849 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 517977..518849 Shewanella amazonensis SB2B 4602675 YP_926301.1 CDS Sama_0421 NC_008700.1 518800 519885 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(518800..519885) Shewanella amazonensis SB2B 4602676 YP_926302.1 CDS Sama_0422 NC_008700.1 519998 520576 R KEGG: son:SO0474 hypothetical protein; hypothetical protein complement(519998..520576) Shewanella amazonensis SB2B 4602677 YP_926303.1 CDS Sama_0423 NC_008700.1 520672 520962 D KEGG: xcv:XCV4020 putative mitomycin resistance protein; putative mitomycin resistance protein 520672..520962 Shewanella amazonensis SB2B 4602678 YP_926304.1 CDS Sama_0424 NC_008700.1 520976 521746 R KEGG: vvy:VV1499 hypothetical protein; hypothetical protein complement(520976..521746) Shewanella amazonensis SB2B 4602679 YP_926305.1 CDS fre NC_008700.1 521851 522549 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(521851..522549) Shewanella amazonensis SB2B 4602680 YP_926306.1 CDS Sama_0426 NC_008700.1 522664 524145 R KEGG: sdn:Sden_3059 carboxylyase-related protein; carboxylyase-like protein complement(522664..524145) Shewanella amazonensis SB2B 4602681 YP_926307.1 CDS Sama_0427 NC_008700.1 524243 524767 D KEGG: son:SO0508 hypothetical protein; hypothetical protein 524243..524767 Shewanella amazonensis SB2B 4602682 YP_926308.1 CDS Sama_0428 NC_008700.1 524819 527146 R KEGG: sdn:Sden_3015 peptidase M4, thermolysin; peptidase M4, thermolysin complement(524819..527146) Shewanella amazonensis SB2B 4602683 YP_926309.1 CDS Sama_0429 NC_008700.1 527429 527809 R KEGG: son:SO4164 hypothetical protein; hypothetical protein complement(527429..527809) Shewanella amazonensis SB2B 4602684 YP_926310.1 CDS Sama_0430 NC_008700.1 527928 531152 D KEGG: son:SO1699 transcriptional regulator; putative transcriptional regulator CadC 527928..531152 Shewanella amazonensis SB2B 4602685 YP_926311.1 CDS Sama_0431 NC_008700.1 531285 531632 D KEGG: son:SO1698 hypothetical protein; hypothetical protein 531285..531632 Shewanella amazonensis SB2B 4602686 YP_926312.1 CDS Sama_0432 NC_008700.1 531879 532790 D KEGG: son:SO1695 sensory box/GGDEF family protein; response regulator receiver protein 531879..532790 Shewanella amazonensis SB2B 4602687 YP_926313.1 CDS Sama_0433 NC_008700.1 532806 533057 D hypothetical protein 532806..533057 Shewanella amazonensis SB2B 4602688 YP_926314.1 CDS Sama_0434 NC_008700.1 533075 534367 R KEGG: pha:PSHAb0513 putative secreted hydrolase; putative secreted hydrolase complement(533075..534367) Shewanella amazonensis SB2B 4602689 YP_926315.1 CDS Sama_0435 NC_008700.1 534501 535082 R KEGG: vpa:VP1371 putative phosphoglycerate mutase family protein; putative phosphoglycerate mutase family protein complement(534501..535082) Shewanella amazonensis SB2B 4602690 YP_926316.1 CDS Sama_0436 NC_008700.1 535310 535879 D KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein 535310..535879 Shewanella amazonensis SB2B 4602691 YP_926317.1 CDS Sama_0437 NC_008700.1 535989 536702 D KEGG: pae:PA1157 probable two-component response regulator; response regulator receiver protein 535989..536702 Shewanella amazonensis SB2B 4602692 YP_926318.1 CDS Sama_0438 NC_008700.1 536704 538971 D KEGG: pha:PSHAa0111 hypothetical protein; signal transduction histidine kinase-like protein 536704..538971 Shewanella amazonensis SB2B 4602693 YP_926319.1 CDS Sama_0439 NC_008700.1 539199 542654 D KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; subtilisin-like serine protease-like protein 539199..542654 Shewanella amazonensis SB2B 4602694 YP_926320.1 CDS hslU NC_008700.1 542817 544142 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(542817..544142) Shewanella amazonensis SB2B 4602695 YP_926321.1 CDS Sama_0441 NC_008700.1 544152 544676 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(544152..544676) Shewanella amazonensis SB2B 4602696 YP_926322.1 CDS Sama_0442 NC_008700.1 544882 545439 R KEGG: sdn:Sden_3358 sporulation related; sporulation-like protein complement(544882..545439) Shewanella amazonensis SB2B 4602697 YP_926323.1 CDS argS NC_008700.1 545443 547188 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(545443..547188) Shewanella amazonensis SB2B 4602698 YP_926324.1 CDS Sama_0444 NC_008700.1 547676 549523 R KEGG: vvu:VV21346 autotransporter adhesin; hypothetical protein complement(547676..549523) Shewanella amazonensis SB2B 4602699 YP_926325.1 CDS Sama_0445 NC_008700.1 549686 551893 R KEGG: she:Shewmr4_3495 primosomal protein N'; primosomal protein N' complement(549686..551893) Shewanella amazonensis SB2B 4602700 YP_926326.1 CDS Sama_0446 NC_008700.1 552004 552729 D KEGG: sdn:Sden_3355 hypothetical protein; hypothetical protein 552004..552729 Shewanella amazonensis SB2B 4602701 YP_926327.1 CDS rpmE NC_008700.1 552877 553089 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 552877..553089 Shewanella amazonensis SB2B 4602702 YP_926328.1 CDS Sama_0448 NC_008700.1 553592 554839 D KEGG: sdn:Sden_3353 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); malate dehydrogenase 553592..554839 Shewanella amazonensis SB2B 4602703 YP_926329.1 CDS Sama_0449 NC_008700.1 554989 556896 D regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 554989..556896 Shewanella amazonensis SB2B 4602704 YP_926330.1 CDS Sama_0450 NC_008700.1 557067 557936 D KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 557067..557936 Shewanella amazonensis SB2B 4602705 YP_926331.1 CDS Sama_0451 NC_008700.1 557933 558535 D KEGG: sdn:Sden_3350 hypothetical protein; hypothetical protein 557933..558535 Shewanella amazonensis SB2B 4602706 YP_926332.1 CDS Sama_0452 NC_008700.1 558532 559185 D KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 558532..559185 Shewanella amazonensis SB2B 4602707 YP_926333.1 CDS Sama_0453 NC_008700.1 559169 559465 D KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 559169..559465 Shewanella amazonensis SB2B 4602708 YP_926334.1 CDS Sama_0454 NC_008700.1 559471 561156 D KEGG: son:SO4112 MSHA biogenesis protein MshL; MSHA biogenesis protein MshL 559471..561156 Shewanella amazonensis SB2B 4602709 YP_926335.1 CDS Sama_0455 NC_008700.1 561158 562060 D KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 561158..562060 Shewanella amazonensis SB2B 4602710 YP_926336.1 CDS Sama_0456 NC_008700.1 562057 563256 D KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; MSHA biogenesis protein MshN 562057..563256 Shewanella amazonensis SB2B 4602711 YP_926337.1 CDS Sama_0457 NC_008700.1 563253 565016 D KEGG: son:SO4109 MSHA biogenesis protein MshE; MSHA biogenesis protein MshE 563253..565016 Shewanella amazonensis SB2B 4602712 YP_926338.1 CDS Sama_0458 NC_008700.1 565019 566239 D KEGG: son:SO4108 MSHA biogenesis protein MshG; MSHA biogenesis protein MshG 565019..566239 Shewanella amazonensis SB2B 4602713 YP_926339.1 CDS Sama_0459 NC_008700.1 566243 566734 D KEGG: son:SO4107 hypothetical protein; hypothetical protein 566243..566734 Shewanella amazonensis SB2B 4602714 YP_926340.1 CDS Sama_0460 NC_008700.1 566805 567410 D KEGG: son:SO4106 MSHA pilin protein MshB; MSHA pilin protein MshB 566805..567410 Shewanella amazonensis SB2B 4602715 YP_926341.1 CDS Sama_0461 NC_008700.1 567449 567967 D KEGG: son:SO4105 MSHA pilin protein MshA; MSHA pilin protein MshA 567449..567967 Shewanella amazonensis SB2B 4602716 YP_926342.1 CDS Sama_0462 NC_008700.1 568086 568577 D KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC 568086..568577 Shewanella amazonensis SB2B 4602717 YP_926343.1 CDS Sama_0463 NC_008700.1 568567 569094 D KEGG: son:SO4103 MSHA pilin protein MshD; MSHA pilin protein MshD 568567..569094 Shewanella amazonensis SB2B 4602718 YP_926344.1 CDS Sama_0464 NC_008700.1 569094 569942 D KEGG: sdn:Sden_3337 MSHA biogenesis protein MshO precursor; MSHA biogenesis protein MshO 569094..569942 Shewanella amazonensis SB2B 4602719 YP_926345.1 CDS Sama_0465 NC_008700.1 569932 570351 D KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 569932..570351 Shewanella amazonensis SB2B 4602720 YP_926346.1 CDS Sama_0466 NC_008700.1 570455 572968 D KEGG: she:Shewmr4_3473 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 570455..572968 Shewanella amazonensis SB2B 4602721 YP_926347.2 CDS Sama_0467 NC_008700.1 573182 574231 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 573182..574231 Shewanella amazonensis SB2B 4602722 YP_926348.1 CDS Sama_0468 NC_008700.1 574277 575206 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 574277..575206 Shewanella amazonensis SB2B 4602723 YP_926349.1 CDS Sama_0469 NC_008700.1 575203 575691 D KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 575203..575691 Shewanella amazonensis SB2B 4602724 YP_926350.1 CDS Sama_0470 NC_008700.1 575697 576281 D KEGG: sdn:Sden_3331 maf protein; maf protein 575697..576281 Shewanella amazonensis SB2B 4602725 YP_926351.1 CDS Sama_0471 NC_008700.1 576329 577837 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 576329..577837 Shewanella amazonensis SB2B 4602726 YP_926352.1 CDS Sama_0472 NC_008700.1 577837 582384 D KEGG: son:SO4093 hypothetical protein; membrane protein 577837..582384 Shewanella amazonensis SB2B 4602727 YP_926353.1 CDS Sama_0473 NC_008700.1 582308 583150 D KEGG: son:SO4092 hydrolase, carbon-nitrogen family; carbon-nitrogen family hydrolase 582308..583150 Shewanella amazonensis SB2B 4602728 YP_926354.1 CDS Sama_0474 NC_008700.1 583184 584632 D KEGG: son:SO4091 TldD protein; TldD protein 583184..584632 Shewanella amazonensis SB2B 4602729 YP_926355.1 CDS Sama_0475 NC_008700.1 585205 586251 R KEGG: vpa:VPA1416 putative oxidoreductase; putative oxidoreductase complement(585205..586251) Shewanella amazonensis SB2B 4602730 YP_926356.1 CDS Sama_0476 NC_008700.1 586362 586952 R KEGG: sdn:Sden_1388 regulatory protein, TetR; TetR family transcriptional regulator complement(586362..586952) Shewanella amazonensis SB2B 4602731 YP_926357.1 CDS Sama_0477 NC_008700.1 587413 588966 D KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein 587413..588966 Shewanella amazonensis SB2B 4602732 YP_926358.1 CDS Sama_0478 NC_008700.1 588963 589931 D KEGG: son:SO4089 HlyD family secretion protein; HlyD family secretion protein 588963..589931 Shewanella amazonensis SB2B 4602733 YP_926359.1 CDS Sama_0479 NC_008700.1 589935 591062 D KEGG: son:SO4088 conserved hypothetical protein; hypothetical protein 589935..591062 Shewanella amazonensis SB2B 4602734 YP_926360.1 CDS Sama_0480 NC_008700.1 591059 592219 D KEGG: son:SO4087 conserved hypothetical protein; hypothetical protein 591059..592219 Shewanella amazonensis SB2B 4602735 YP_926361.1 CDS Sama_0481 NC_008700.1 592271 592819 R KEGG: sdn:Sden_3068 protein of unknown function DUF615; hypothetical protein complement(592271..592819) Shewanella amazonensis SB2B 4602736 YP_926362.1 CDS Sama_0482 NC_008700.1 592968 594329 D KEGG: son:SO4078 PmbA protein; PmbA protein 592968..594329 Shewanella amazonensis SB2B 4602737 YP_926363.1 CDS Sama_0483 NC_008700.1 594438 595316 R KEGG: son:SO4075 hypothetical protein; hypothetical protein complement(594438..595316) Shewanella amazonensis SB2B 4602738 YP_926364.1 CDS Sama_0484 NC_008700.1 595488 595727 D KEGG: son:SO4073 hypothetical protein; hypothetical protein 595488..595727 Shewanella amazonensis SB2B 4602739 YP_926365.1 CDS rimO NC_008700.1 595731 597212 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(595731..597212) Shewanella amazonensis SB2B 4602740 YP_926366.1 CDS Sama_0486 NC_008700.1 597397 598104 D KEGG: son:SO4070 hypothetical protein; hypothetical protein 597397..598104 Shewanella amazonensis SB2B 4602741 YP_926367.1 CDS Sama_0487 NC_008700.1 598185 598682 R KEGG: xcv:XCV3915 N-acetyltransferase; N-acetyltransferase complement(598185..598682) Shewanella amazonensis SB2B 4602742 YP_926368.1 CDS Sama_0488 NC_008700.1 598963 599883 D KEGG: gvi:gll0899 metalloprotease MEP1 homolog; hypothetical protein 598963..599883 Shewanella amazonensis SB2B 4602743 YP_926369.1 CDS Sama_0489 NC_008700.1 599939 600397 R KEGG: sdn:Sden_0976 UspA; hypothetical protein complement(599939..600397) Shewanella amazonensis SB2B 4602744 YP_926370.1 CDS Sama_0490 NC_008700.1 600712 602559 R KEGG: ava:Ava_3197 Zn-dependent protease with chaperone function-like; Zn-dependent protease with chaperone function complement(600712..602559) Shewanella amazonensis SB2B 4602745 YP_926371.1 CDS Sama_0491 NC_008700.1 602790 603893 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(602790..603893) Shewanella amazonensis SB2B 4602746 YP_926372.1 CDS Sama_0492 NC_008700.1 604192 605688 R KEGG: pat:Patl_4147 sodium/proline symporter; sodium/proline symporter complement(604192..605688) Shewanella amazonensis SB2B 4602747 YP_926373.1 CDS Sama_0493 NC_008700.1 606322 606675 D KEGG: hch:HCH_04651 predicted transcriptional regulator; transcriptional regulator 606322..606675 Shewanella amazonensis SB2B 4602748 YP_926374.1 CDS Sama_0494 NC_008700.1 606705 607718 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 606705..607718 Shewanella amazonensis SB2B 4602749 YP_926375.1 CDS Sama_0495 NC_008700.1 607723 608934 D KEGG: son:SO0539 transporter, putative; transporter 607723..608934 Shewanella amazonensis SB2B 4602750 YP_926376.1 CDS Sama_0496 NC_008700.1 608979 611282 D KEGG: ilo:IL2267 signaling protein (CheY,EAL,GGDEF domain proteins); putative diguanylate phosphodiesterase 608979..611282 Shewanella amazonensis SB2B 4602751 YP_926377.1 CDS Sama_0497 NC_008700.1 611362 612816 D KEGG: son:SO0541 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 611362..612816 Shewanella amazonensis SB2B 4602752 YP_926378.1 CDS Sama_0498 NC_008700.1 612880 613830 D KEGG: son:SO4040 integral membrane domain protein; integral membrane domain-containing protein 612880..613830 Shewanella amazonensis SB2B 4602753 YP_926379.1 CDS Sama_0499 NC_008700.1 613827 614441 D KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD superfamily hydrolase 613827..614441 Shewanella amazonensis SB2B 4602754 YP_926380.1 CDS Sama_0500 NC_008700.1 614413 614751 R KEGG: son:SO4035 hypothetical protein; hypothetical protein complement(614413..614751) Shewanella amazonensis SB2B 4602755 YP_926381.1 CDS Sama_0501 NC_008700.1 614837 615427 D KEGG: son:SO0112 hypothetical protein; hypothetical protein 614837..615427 Shewanella amazonensis SB2B 4602756 YP_926382.1 CDS Sama_0502 NC_008700.1 615538 617202 R KEGG: sdn:Sden_2371 alkaline phosphatase; alkaline phosphatase complement(615538..617202) Shewanella amazonensis SB2B 4602757 YP_926383.1 CDS Sama_0503 NC_008700.1 617349 617810 R KEGG: sdn:Sden_0479 conserved hypothetical protein 22; hypothetical protein complement(617349..617810) Shewanella amazonensis SB2B 4602758 YP_926384.1 CDS Sama_0504 NC_008700.1 617948 619003 D KEGG: sdn:Sden_0480 hypothetical protein; hypothetical protein 617948..619003 Shewanella amazonensis SB2B 4602759 YP_926385.1 CDS Sama_0505 NC_008700.1 619137 619712 D KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 619137..619712 Shewanella amazonensis SB2B 4602760 YP_926386.1 CDS Sama_0506 NC_008700.1 619784 620713 D KEGG: sdn:Sden_0482 pseudouridine synthase; pseudouridine synthase 619784..620713 Shewanella amazonensis SB2B 4602761 YP_926387.1 CDS Sama_0507 NC_008700.1 620919 621968 D KEGG: son:SO4178 hypothetical protein; hypothetical protein 620919..621968 Shewanella amazonensis SB2B 4602762 YP_926388.1 CDS Sama_0508 NC_008700.1 622053 623924 R KEGG: son:SO4176 hypothetical protein; hypothetical protein complement(622053..623924) Shewanella amazonensis SB2B 4602763 YP_926389.1 CDS Sama_0509 NC_008700.1 624129 625034 D KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein; NAD dependent epimerase/dehydratase family protein 624129..625034 Shewanella amazonensis SB2B 4602764 YP_926390.1 CDS Sama_0510 NC_008700.1 625127 626077 R KEGG: eca:ECA0652 hypothetical protein; hypothetical protein complement(625127..626077) Shewanella amazonensis SB2B 4602765 YP_926391.1 CDS Sama_0511 NC_008700.1 626443 628404 D KEGG: vvu:VV20989 alkyl sulfatase; alkyl sulfatase 626443..628404 Shewanella amazonensis SB2B 4602766 YP_926392.1 CDS Sama_0512 NC_008700.1 628459 630372 R KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; ATP-dependent RNA helicase DeaD complement(628459..630372) Shewanella amazonensis SB2B 4602767 YP_926393.1 CDS Sama_0513 NC_008700.1 630575 631600 R KEGG: sdn:Sden_3316 peptidase M28; peptidase M28 complement(630575..631600) Shewanella amazonensis SB2B 4602768 YP_926394.1 CDS Sama_0514 NC_008700.1 631612 634440 R KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(631612..634440) Shewanella amazonensis SB2B 4602769 YP_926395.1 CDS Sama_0515 NC_008700.1 634698 636065 D KEGG: son:SO4029 transporter, putative; transporter 634698..636065 Shewanella amazonensis SB2B 4602770 YP_926396.1 CDS Sama_0516 NC_008700.1 636101 636805 D KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 636101..636805 Shewanella amazonensis SB2B 4602771 YP_926397.1 CDS Sama_0517 NC_008700.1 636932 637732 R KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; D-beta-hydroxybutyrate dehydrogenase complement(636932..637732) Shewanella amazonensis SB2B 4602772 YP_926398.1 CDS Sama_0518 NC_008700.1 637904 638665 D KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit; 3-oxoacid CoA-transferase 637904..638665 Shewanella amazonensis SB2B 4602773 YP_926399.1 CDS Sama_0519 NC_008700.1 638675 639340 D KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit; 3-oxoacid CoA-transferase 638675..639340 Shewanella amazonensis SB2B 4602774 YP_926400.1 CDS Sama_0520 NC_008700.1 639484 640431 D KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; putative polyhydroxyalkanoate depolymerase 639484..640431 Shewanella amazonensis SB2B 4602775 YP_926401.1 CDS Sama_0521 NC_008700.1 640698 642974 D KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor 640698..642974 Shewanella amazonensis SB2B 4602776 YP_926402.1 CDS Sama_0522 NC_008700.1 643103 643774 D KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; response regulator receiver protein 643103..643774 Shewanella amazonensis SB2B 4602777 YP_926403.1 CDS Sama_0523 NC_008700.1 643905 647444 R KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; sensory box sensor histidine kinase/response regulator complement(643905..647444) Shewanella amazonensis SB2B 4602778 YP_926404.1 CDS Sama_0524 NC_008700.1 647574 648740 D KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator family transporter 647574..648740 Shewanella amazonensis SB2B 4602779 YP_926405.1 CDS Sama_0525 NC_008700.1 648743 649699 D KEGG: cps:CPS_0941 putative lipase; putative lipase 648743..649699 Shewanella amazonensis SB2B 4602780 YP_926406.1 CDS Sama_0526 NC_008700.1 649686 650492 R KEGG: hch:HCH_02925 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein complement(649686..650492) Shewanella amazonensis SB2B 4602781 YP_926407.1 CDS Sama_0527 NC_008700.1 650682 651740 R KEGG: son:SO4047 cytochrome c family protein; cytochrome c family protein complement(650682..651740) Shewanella amazonensis SB2B 4602782 YP_926408.1 CDS Sama_0528 NC_008700.1 651752 652366 R KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein complement(651752..652366) Shewanella amazonensis SB2B 4602783 YP_926409.1 CDS Sama_0529 NC_008700.1 652541 653227 D KEGG: neu:NE1275 hypothetical protein; hypothetical protein 652541..653227 Shewanella amazonensis SB2B 4602784 YP_926410.1 CDS Sama_0530 NC_008700.1 653396 654574 D KEGG: dar:Daro_3621 GGDEF; response regulator receiver protein 653396..654574 Shewanella amazonensis SB2B 4602785 YP_926411.1 CDS Sama_0531 NC_008700.1 654762 655235 D KEGG: shm:Shewmr7_0993 YbaK/EbsC protein; YbaK/EbsC protein 654762..655235 Shewanella amazonensis SB2B 4602786 YP_926412.1 CDS Sama_0532 NC_008700.1 655435 657006 D KEGG: son:SO3404 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 655435..657006 Shewanella amazonensis SB2B 4602787 YP_926413.1 CDS Sama_0533 NC_008700.1 657261 658262 D KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; zinc-containing alcohol dehydrogenase 657261..658262 Shewanella amazonensis SB2B 4602788 YP_926414.1 CDS Sama_0534 NC_008700.1 658509 658931 D KEGG: son:SO0691 hypothetical protein; hypothetical protein 658509..658931 Shewanella amazonensis SB2B 4602789 YP_926415.1 CDS Sama_0535 NC_008700.1 659093 660118 R KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase complement(659093..660118) Shewanella amazonensis SB2B 4602790 YP_926416.1 CDS Sama_0536 NC_008700.1 660214 661362 R KEGG: son:SO0694 galactokinase; galactokinase complement(660214..661362) Shewanella amazonensis SB2B 4602791 YP_926417.1 CDS Sama_0537 NC_008700.1 661514 663121 R KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; glutathione-regulated potassium-efflux system protein KefC complement(661514..663121) Shewanella amazonensis SB2B 4602792 YP_926418.1 CDS dipZ NC_008700.1 663245 665068 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(663245..665068) Shewanella amazonensis SB2B 4602793 YP_926419.1 CDS Sama_0539 NC_008700.1 665065 665397 R KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; periplasmic divalent cation tolerance protein CutA complement(665065..665397) Shewanella amazonensis SB2B 4602794 YP_926420.1 CDS Sama_0540 NC_008700.1 665610 666200 D KEGG: sdn:Sden_0418 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 665610..666200 Shewanella amazonensis SB2B 4602795 YP_926421.1 CDS Sama_0541 NC_008700.1 666263 668083 R KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase complement(666263..668083) Shewanella amazonensis SB2B 4602796 YP_926422.1 CDS Sama_0542 NC_008700.1 668288 668632 D KEGG: son:SO0581 hypothetical protein; hypothetical protein 668288..668632 Shewanella amazonensis SB2B 4602797 YP_926423.1 CDS Sama_0543 NC_008700.1 668701 669357 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 668701..669357 Shewanella amazonensis SB2B 4602798 YP_926424.1 CDS Sama_0544 NC_008700.1 669483 670568 R KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin complement(669483..670568) Shewanella amazonensis SB2B 4602799 YP_926425.1 CDS Sama_0545 NC_008700.1 670954 672021 R KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin complement(670954..672021) Shewanella amazonensis SB2B 4602800 YP_926426.1 CDS Sama_0546 NC_008700.1 672326 673159 D KEGG: son:SO3895 HesA/MoeB/ThiF family protein; HesA/MoeB/ThiF family protein 672326..673159 Shewanella amazonensis SB2B 4602801 YP_926427.1 CDS Sama_0547 NC_008700.1 673156 674799 R KEGG: son:SO3894 sensor histidine kinase; sensor histidine kinase complement(673156..674799) Shewanella amazonensis SB2B 4602802 YP_926428.1 CDS Sama_0548 NC_008700.1 674969 675589 D KEGG: sdn:Sden_0544 hypothetical protein; hypothetical protein 674969..675589 Shewanella amazonensis SB2B 4602803 YP_926429.1 CDS Sama_0549 NC_008700.1 675686 675814 R KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein complement(675686..675814) Shewanella amazonensis SB2B 4602804 YP_926430.1 CDS Sama_0550 NC_008700.1 676060 677616 D KEGG: son:SO3890 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 676060..677616 Shewanella amazonensis SB2B 4602805 YP_926431.1 CDS Sama_0551 NC_008700.1 677767 678540 D KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; hypothetical protein 677767..678540 Shewanella amazonensis SB2B 4602806 YP_926432.1 CDS Sama_0552 NC_008700.1 678644 680590 D KEGG: sdn:Sden_2239 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 678644..680590 Shewanella amazonensis SB2B 4602807 YP_926433.1 CDS Sama_0554 NC_008700.1 682208 684316 R KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; putative transcriptional regulator CadC complement(682208..684316) Shewanella amazonensis SB2B 4606035 YP_926434.1 CDS Sama_0555 NC_008700.1 684514 688713 R KEGG: pat:Patl_1035 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(684514..688713) Shewanella amazonensis SB2B 4602809 YP_926435.1 CDS Sama_0556 NC_008700.1 688759 692544 R KEGG: son:SO3800 serine protease, subtilase family; hypothetical protein complement(688759..692544) Shewanella amazonensis SB2B 4602810 YP_926436.1 CDS Sama_0558 NC_008700.1 693651 694433 D KEGG: nmu:Nmul_A1650 protein of unknown function DUF81; hypothetical protein 693651..694433 Shewanella amazonensis SB2B 4606036 YP_926437.1 CDS Sama_0559 NC_008700.1 694555 695007 R hypothetical protein complement(694555..695007) Shewanella amazonensis SB2B 4602812 YP_926438.1 CDS Sama_0560 NC_008700.1 695465 696634 R KEGG: cps:CPS_2647 hypothetical protein; hypothetical protein complement(695465..696634) Shewanella amazonensis SB2B 4602813 YP_926439.1 CDS Sama_0561 NC_008700.1 696656 697687 R KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; carbohydrate kinase complement(696656..697687) Shewanella amazonensis SB2B 4602814 YP_926440.1 CDS Sama_0562 NC_008700.1 697684 698925 R KEGG: pat:Patl_0119 glucose/galactose transporter; glucose/galactose transporter complement(697684..698925) Shewanella amazonensis SB2B 4602815 YP_926441.1 CDS Sama_0563 NC_008700.1 698929 701478 R KEGG: cps:CPS_2650 alpha-1,2-mannosidase family protein; alpha-1,2-mannosidase family protein complement(698929..701478) Shewanella amazonensis SB2B 4602816 YP_926442.1 CDS Sama_0564 NC_008700.1 701524 703878 R KEGG: cps:CPS_2651 alpha-1,2-mannosidase family protein; alpha-1,2-mannosidase family protein complement(701524..703878) Shewanella amazonensis SB2B 4602817 YP_926443.1 CDS Sama_0565 NC_008700.1 704038 705057 D KEGG: cps:CPS_2652 transcriptional regulator, LacI family; LacI family transcriptional regulator 704038..705057 Shewanella amazonensis SB2B 4602818 YP_926444.1 CDS Sama_0566 NC_008700.1 705114 706226 R KEGG: son:SO0823 hypothetical protein; hypothetical protein complement(705114..706226) Shewanella amazonensis SB2B 4602819 YP_926445.1 CDS Sama_0567 NC_008700.1 706314 706658 R hypothetical protein complement(706314..706658) Shewanella amazonensis SB2B 4602820 YP_926446.1 CDS Sama_0568 NC_008700.1 706662 708332 R KEGG: son:SO0826 hypothetical protein; hypothetical protein complement(706662..708332) Shewanella amazonensis SB2B 4602821 YP_926447.1 CDS Sama_0569 NC_008700.1 708577 709539 R KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase complement(708577..709539) Shewanella amazonensis SB2B 4602822 YP_926448.1 CDS Sama_0570 NC_008700.1 709781 710185 D KEGG: nmu:Nmul_A1955 hypothetical protein; hypothetical protein 709781..710185 Shewanella amazonensis SB2B 4602823 YP_926449.1 CDS Sama_0571 NC_008700.1 710172 711323 D KEGG: cps:CPS_0951 hypothetical protein; hypothetical protein 710172..711323 Shewanella amazonensis SB2B 4602824 YP_926450.1 CDS Sama_0572 NC_008700.1 711328 713802 D KEGG: pat:Patl_0060 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 711328..713802 Shewanella amazonensis SB2B 4602825 YP_926451.1 CDS Sama_0573 NC_008700.1 713799 715277 R KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase complement(713799..715277) Shewanella amazonensis SB2B 4602826 YP_926452.1 CDS Sama_0574 NC_008700.1 715316 716266 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(715316..716266) Shewanella amazonensis SB2B 4602827 YP_926453.1 CDS Sama_0575 NC_008700.1 716297 717028 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(716297..717028) Shewanella amazonensis SB2B 4602828 YP_926454.1 CDS Sama_0576 NC_008700.1 717046 717774 R KEGG: son:SO0833 endonuclease I; deoxyribonuclease I complement(717046..717774) Shewanella amazonensis SB2B 4602829 YP_926455.1 CDS Sama_0577 NC_008700.1 717920 718474 R KEGG: son:SO0834 sprT protein, putative; sprT protein complement(717920..718474) Shewanella amazonensis SB2B 4602830 YP_926456.1 CDS Sama_0578 NC_008700.1 718547 719704 R KEGG: son:SO0835 hypothetical protein; hypothetical protein complement(718547..719704) Shewanella amazonensis SB2B 4602831 YP_926457.1 CDS Sama_0579 NC_008700.1 719846 720757 R KEGG: son:SO0839 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(719846..720757) Shewanella amazonensis SB2B 4602832 YP_926458.1 CDS Sama_0580 NC_008700.1 720879 725432 D KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; acetyl-CoA carboxylase multifunctional carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase 720879..725432 Shewanella amazonensis SB2B 4602833 YP_926459.1 CDS Sama_0581 NC_008700.1 725723 726970 D KEGG: pat:Patl_0484 hypothetical protein; hypothetical protein 725723..726970 Shewanella amazonensis SB2B 4602834 YP_926460.1 CDS Sama_0582 NC_008700.1 726973 727401 D KEGG: dar:Daro_2871 hypothetical protein; hypothetical protein 726973..727401 Shewanella amazonensis SB2B 4602835 YP_926461.1 CDS Sama_0583 NC_008700.1 727391 728977 D KEGG: pat:Patl_0006 diguanylate cyclase; diguanylate cyclase 727391..728977 Shewanella amazonensis SB2B 4602836 YP_926462.1 CDS Sama_0584 NC_008700.1 729256 731346 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 729256..731346 Shewanella amazonensis SB2B 4602837 YP_926463.1 CDS Sama_0585 NC_008700.1 731480 732361 D KEGG: sdn:Sden_3443 hypothetical protein; hypothetical protein 731480..732361 Shewanella amazonensis SB2B 4602838 YP_926464.1 CDS Sama_0586 NC_008700.1 732315 733223 R KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(732315..733223) Shewanella amazonensis SB2B 4602839 YP_926465.1 CDS Sama_0587 NC_008700.1 733548 734306 R KEGG: sdn:Sden_0640 PepSY-associated TM helix; PepSY-associated TM helix family protein complement(733548..734306) Shewanella amazonensis SB2B 4602840 YP_926466.1 CDS Sama_0588 NC_008700.1 734310 734819 R KEGG: sdn:Sden_0639 FMN-binding; FMN-binding protein complement(734310..734819) Shewanella amazonensis SB2B 4602841 YP_926467.1 CDS Sama_0589 NC_008700.1 734874 736049 R KEGG: sdn:Sden_0638 phosphate-selective porin O and P; phosphate-selective porin O and P complement(734874..736049) Shewanella amazonensis SB2B 4602842 YP_926468.1 CDS Sama_0590 NC_008700.1 736305 738518 R KEGG: pha:PSHAa2478 putative TonB-dependent receptor protein; putative TonB-dependent receptor protein complement(736305..738518) Shewanella amazonensis SB2B 4602843 YP_926469.1 CDS Sama_0591 NC_008700.1 738742 739443 D KEGG: son:SO4011 hypothetical protein; hypothetical protein 738742..739443 Shewanella amazonensis SB2B 4602844 YP_926470.1 CDS Sama_0592 NC_008700.1 739679 743359 D KEGG: son:SO4008 hypothetical protein; hypothetical protein 739679..743359 Shewanella amazonensis SB2B 4602845 YP_926471.1 CDS Sama_0593 NC_008700.1 743359 744024 D KEGG: sdn:Sden_2990 hypothetical protein; hypothetical protein 743359..744024 Shewanella amazonensis SB2B 4602846 YP_926472.1 CDS Sama_0594 NC_008700.1 744021 745241 D KEGG: son:SO4006 hypothetical protein; hypothetical protein 744021..745241 Shewanella amazonensis SB2B 4602847 YP_926473.1 CDS Sama_0595 NC_008700.1 745648 746892 D KEGG: she:Shewmr4_0642 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 745648..746892 Shewanella amazonensis SB2B 4602848 YP_926474.1 CDS Sama_0596 NC_008700.1 747054 747500 D KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 747054..747500 Shewanella amazonensis SB2B 4602849 YP_926475.1 CDS Sama_0597 NC_008700.1 747954 748385 R KEGG: shm:Shewmr7_3377 hypothetical protein; hypothetical protein complement(747954..748385) Shewanella amazonensis SB2B 4602850 YP_926476.1 CDS Sama_0598 NC_008700.1 748603 749136 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(748603..749136) Shewanella amazonensis SB2B 4602851 YP_926477.1 CDS Sama_0599 NC_008700.1 749259 750221 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(749259..750221) Shewanella amazonensis SB2B 4602852 YP_926478.1 CDS Sama_0600 NC_008700.1 750359 752665 D KEGG: son:SO3990 dipeptidyl peptidase IV; dipeptidyl peptidase IV 750359..752665 Shewanella amazonensis SB2B 4602853 YP_926479.1 CDS Sama_0601 NC_008700.1 752820 753536 R KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator complement(752820..753536) Shewanella amazonensis SB2B 4602854 YP_926480.1 CDS Sama_0602 NC_008700.1 754093 754584 D KEGG: son:SO3987 hypothetical protein; hypothetical protein 754093..754584 Shewanella amazonensis SB2B 4602855 YP_926481.1 CDS Sama_0603 NC_008700.1 754982 756340 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 754982..756340 Shewanella amazonensis SB2B 4602856 YP_926482.1 CDS Sama_0604 NC_008700.1 756340 757443 D KEGG: son:SO3985 hypothetical protein; hypothetical protein 756340..757443 Shewanella amazonensis SB2B 4602857 YP_926483.1 CDS Sama_0605 NC_008700.1 757502 757963 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(757502..757963) Shewanella amazonensis SB2B 4602858 YP_926484.1 CDS Sama_0606 NC_008700.1 758042 758719 R KEGG: sdn:Sden_3048 pseudouridylate synthase; pseudouridylate synthase complement(758042..758719) Shewanella amazonensis SB2B 4602859 YP_926485.1 CDS Sama_0607 NC_008700.1 758871 761060 D KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; putative transcriptional regulator CadC 758871..761060 Shewanella amazonensis SB2B 4602860 YP_926486.1 CDS Sama_0608 NC_008700.1 761846 762133 R KEGG: son:SO0973 hypothetical protein; hypothetical protein complement(761846..762133) Shewanella amazonensis SB2B 4602861 YP_926487.1 CDS Sama_0609 NC_008700.1 762136 762660 R KEGG: son:SO0972 hypothetical protein; hypothetical protein complement(762136..762660) Shewanella amazonensis SB2B 4602862 YP_926488.1 CDS Sama_0610 NC_008700.1 762657 763067 R KEGG: son:SO0971 hypothetical protein; hypothetical protein complement(762657..763067) Shewanella amazonensis SB2B 4602863 YP_926489.1 CDS Sama_0611 NC_008700.1 763431 765212 D KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; fumarate reductase flavoprotein subunit 763431..765212 Shewanella amazonensis SB2B 4602864 YP_926490.1 CDS Sama_0612 NC_008700.1 765389 766378 D KEGG: son:SO0968 D-lactate dehydrogenase; D-lactate dehydrogenase 765389..766378 Shewanella amazonensis SB2B 4602865 YP_926491.1 CDS Sama_0613 NC_008700.1 766446 767180 D KEGG: sdn:Sden_3046 dienelactone hydrolase; dienelactone hydrolase 766446..767180 Shewanella amazonensis SB2B 4602866 YP_926492.1 CDS Sama_0614 NC_008700.1 767252 767887 R KEGG: sdn:Sden_3043 hypothetical protein; hypothetical protein complement(767252..767887) Shewanella amazonensis SB2B 4602867 YP_926493.1 CDS Sama_0615 NC_008700.1 767982 768728 D KEGG: son:SO0960 hypothetical spermidine synthase; putative spermidine synthase 767982..768728 Shewanella amazonensis SB2B 4602868 YP_926494.1 CDS Sama_0616 NC_008700.1 768849 770375 D KEGG: son:SO0959 cytosol aminopeptidase; leucyl aminopeptidase 768849..770375 Shewanella amazonensis SB2B 4602869 YP_926495.1 CDS Sama_0617 NC_008700.1 770595 771164 D KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase subunit C 770595..771164 Shewanella amazonensis SB2B 4602870 YP_926496.1 CDS Sama_0618 NC_008700.1 771262 772824 D KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; alkyl hydroperoxide reductase subunit F 771262..772824 Shewanella amazonensis SB2B 4602871 YP_926497.1 CDS Sama_0619 NC_008700.1 772953 774089 D KEGG: syf:Synpcc7942_2096 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 772953..774089 Shewanella amazonensis SB2B 4602872 YP_926498.1 CDS Sama_0620 NC_008700.1 774196 775281 D KEGG: sdn:Sden_0607 hypothetical protein; hypothetical protein 774196..775281 Shewanella amazonensis SB2B 4602873 YP_926499.1 CDS Sama_0621 NC_008700.1 775291 775698 D KEGG: sdn:Sden_0606 hypothetical protein; hypothetical protein 775291..775698 Shewanella amazonensis SB2B 4602874 YP_926500.1 CDS Sama_0622 NC_008700.1 775744 777363 D KEGG: sdn:Sden_3010 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 775744..777363 Shewanella amazonensis SB2B 4602875 YP_926501.1 CDS Sama_0623 NC_008700.1 777448 777702 D KEGG: vpa:VP1367 putative transcriptional regulator, LysR family; hypothetical protein 777448..777702 Shewanella amazonensis SB2B 4602876 YP_926502.1 CDS Sama_0624 NC_008700.1 777849 778052 D hypothetical protein 777849..778052 Shewanella amazonensis SB2B 4602877 YP_926503.1 CDS Sama_0625 NC_008700.1 778135 778323 R KEGG: son:SO0974 hypothetical protein; hypothetical protein complement(778135..778323) Shewanella amazonensis SB2B 4602878 YP_926504.1 CDS Sama_0626 NC_008700.1 778448 779833 R KEGG: son:SO0975 hypothetical protein; hypothetical protein complement(778448..779833) Shewanella amazonensis SB2B 4602879 YP_926505.1 CDS Sama_0627 NC_008700.1 780003 780449 R hypothetical protein complement(780003..780449) Shewanella amazonensis SB2B 4602880 YP_926506.1 CDS Sama_0628 NC_008700.1 780753 781187 D KEGG: son:SO0977 transcriptional regulator, MarR family; MarR family transcriptional regulator 780753..781187 Shewanella amazonensis SB2B 4602881 YP_926507.1 CDS Sama_0629 NC_008700.1 781189 782403 D KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 781189..782403 Shewanella amazonensis SB2B 4602882 YP_926508.1 CDS rumB NC_008700.1 782438 783592 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 782438..783592 Shewanella amazonensis SB2B 4602883 YP_926509.1 CDS Sama_0631 NC_008700.1 783561 784757 R KEGG: son:SO0981 sensor histidine kinase; signal transduction histidine kinase-like protein complement(783561..784757) Shewanella amazonensis SB2B 4602884 YP_926510.1 CDS Sama_0632 NC_008700.1 784754 785461 R KEGG: cps:CPS_3172 DNA-binding response regulator; response regulator receiver protein complement(784754..785461) Shewanella amazonensis SB2B 4602885 YP_926511.1 CDS Sama_0633 NC_008700.1 785446 785829 R hypothetical protein complement(785446..785829) Shewanella amazonensis SB2B 4602886 YP_926512.1 CDS Sama_0634 NC_008700.1 785838 786674 R KEGG: sde:Sde_0548 PAS/PAC sensor signal transduction histidine kinase; outer membrane protein V-like protein complement(785838..786674) Shewanella amazonensis SB2B 4602887 YP_926513.1 CDS Sama_0635 NC_008700.1 787020 792071 D KEGG: son:SO4539 serine protease, subtilase family; serine protease 787020..792071 Shewanella amazonensis SB2B 4602888 YP_926514.1 CDS Sama_0636 NC_008700.1 792246 793391 D KEGG: sdn:Sden_3160 chromate transporter; chromate transporter 792246..793391 Shewanella amazonensis SB2B 4602889 YP_926515.1 CDS Sama_0637 NC_008700.1 793459 794064 R KEGG: son:SO1060 hypothetical protein; hypothetical protein complement(793459..794064) Shewanella amazonensis SB2B 4602890 YP_926516.1 CDS Sama_0638 NC_008700.1 794055 795434 R KEGG: son:SO1061 TPR domain protein; hypothetical protein complement(794055..795434) Shewanella amazonensis SB2B 4602891 YP_926517.1 CDS Sama_0639 NC_008700.1 795431 795955 R KEGG: son:SO1062 polypeptide deformylase; peptide deformylase complement(795431..795955) Shewanella amazonensis SB2B 4602892 YP_926518.1 CDS Sama_0640 NC_008700.1 795983 796207 R KEGG: son:SO1063 SlyX protein; SlyX protein complement(795983..796207) Shewanella amazonensis SB2B 4602893 YP_926519.1 CDS Sama_0641 NC_008700.1 796210 797187 R KEGG: son:SO1064 hypothetical WD domain protein; hypothetical protein complement(796210..797187) Shewanella amazonensis SB2B 4602894 YP_926520.1 CDS Sama_0642 NC_008700.1 797333 798097 D KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 797333..798097 Shewanella amazonensis SB2B 4602895 YP_926521.1 CDS Sama_0643 NC_008700.1 798239 799675 D KEGG: vvy:VVA0728 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 798239..799675 Shewanella amazonensis SB2B 4602896 YP_926522.1 CDS Sama_0644 NC_008700.1 799759 800724 R KEGG: son:SO3984 magnesium transporter, putative; magnesium transporter complement(799759..800724) Shewanella amazonensis SB2B 4602897 YP_926523.1 CDS Sama_0645 NC_008700.1 800875 801249 D KEGG: son:SO3983 hypothetical protein; hypothetical protein 800875..801249 Shewanella amazonensis SB2B 4602898 YP_926524.1 CDS Sama_0646 NC_008700.1 801294 801923 R KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; response regulator receiver protein complement(801294..801923) Shewanella amazonensis SB2B 4602899 YP_926525.1 CDS Sama_0647 NC_008700.1 801916 803628 R KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ complement(801916..803628) Shewanella amazonensis SB2B 4602900 YP_926526.1 CDS nrfA NC_008700.1 803874 805277 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 803874..805277 Shewanella amazonensis SB2B 4602901 YP_926527.1 CDS Sama_0649 NC_008700.1 805358 805897 R KEGG: son:SO0762 isochorismatase family protein; isochorismatase family protein complement(805358..805897) Shewanella amazonensis SB2B 4602902 YP_926528.1 CDS Sama_0650 NC_008700.1 806138 806476 D KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 806138..806476 Shewanella amazonensis SB2B 4602903 YP_926529.1 CDS Sama_0651 NC_008700.1 806488 807738 D KEGG: sdn:Sden_2904 Rh-like protein/ammonium transporter; Rh-like protein/ammonium transporter 806488..807738 Shewanella amazonensis SB2B 4602904 YP_926530.1 CDS Sama_0652 NC_008700.1 807898 808248 D KEGG: sdn:Sden_2903 hypothetical protein; hypothetical protein 807898..808248 Shewanella amazonensis SB2B 4602905 YP_926531.1 CDS Sama_0653 NC_008700.1 808329 809489 D KEGG: son:SO0757 TPR domain protein; hypothetical protein 808329..809489 Shewanella amazonensis SB2B 4602906 YP_926532.1 CDS Sama_0654 NC_008700.1 809748 811064 D KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; putative methyl-accepting chemotaxis sensory transducer 809748..811064 Shewanella amazonensis SB2B 4602907 YP_926533.1 CDS Sama_0655 NC_008700.1 811146 812402 R KEGG: son:SO1700 hypothetical protein; hypothetical protein complement(811146..812402) Shewanella amazonensis SB2B 4602908 YP_926534.1 CDS Sama_0656 NC_008700.1 812413 813270 R KEGG: son:SO1701 hypothetical protein; hypothetical protein complement(812413..813270) Shewanella amazonensis SB2B 4602909 YP_926535.1 CDS Sama_0657 NC_008700.1 813803 814861 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 813803..814861 Shewanella amazonensis SB2B 4602910 YP_926536.1 CDS Sama_0658 NC_008700.1 814903 815079 R KEGG: son:SO0755 hypothetical protein; hypothetical protein complement(814903..815079) Shewanella amazonensis SB2B 4602911 YP_926537.1 CDS Sama_0659 NC_008700.1 815502 817286 D KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 815502..817286 Shewanella amazonensis SB2B 4602912 YP_926538.1 CDS Sama_0660 NC_008700.1 817355 817615 D KEGG: son:SO0753 hypothetical protein; hypothetical protein 817355..817615 Shewanella amazonensis SB2B 4602913 YP_926539.1 CDS Sama_0661 NC_008700.1 817622 817813 R KEGG: son:SO0752 hypothetical protein; hypothetical protein complement(817622..817813) Shewanella amazonensis SB2B 4602914 YP_926540.1 CDS Sama_0662 NC_008700.1 818050 818658 D KEGG: son:SO0748 hypothetical protein; hypothetical protein 818050..818658 Shewanella amazonensis SB2B 4602915 YP_926541.1 CDS Sama_0663 NC_008700.1 818702 819484 D KEGG: son:SO0747 ferredoxin--NADP reductase; ferredoxin--NADP reductase 818702..819484 Shewanella amazonensis SB2B 4602916 YP_926542.1 CDS Sama_0664 NC_008700.1 819503 820105 D KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase family protein 819503..820105 Shewanella amazonensis SB2B 4602917 YP_926543.1 CDS Sama_0665 NC_008700.1 820102 820605 R KEGG: son:SO0745 hypothetical protein; hypothetical protein complement(820102..820605) Shewanella amazonensis SB2B 4602918 YP_926544.1 CDS Sama_0666 NC_008700.1 820843 821850 D KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; iron(III) ABC transporter periplasmic iron(III)-binding protein 820843..821850 Shewanella amazonensis SB2B 4602919 YP_926545.1 CDS Sama_0667 NC_008700.1 821910 823538 D KEGG: son:SO0743 iron(III) ABC transporter, permease protein; iron(III) ABC transporter permease 821910..823538 Shewanella amazonensis SB2B 4602920 YP_926546.1 CDS Sama_0668 NC_008700.1 823540 824565 D KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; iron(III) ABC transporter ATP-binding protein 823540..824565 Shewanella amazonensis SB2B 4602921 YP_926547.1 CDS Sama_0669 NC_008700.1 824619 826325 D KEGG: son:SO0741 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 824619..826325 Shewanella amazonensis SB2B 4602922 YP_926548.1 CDS Sama_0670 NC_008700.1 826433 827368 D KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; melanin biosynthesis protein TyrA 826433..827368 Shewanella amazonensis SB2B 4602923 YP_926549.1 CDS Sama_0671 NC_008700.1 827431 827895 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(827431..827895) Shewanella amazonensis SB2B 4602924 YP_926550.1 CDS Sama_0672 NC_008700.1 828182 829117 D oxidizes malate to oxaloacetate; malate dehydrogenase 828182..829117 Shewanella amazonensis SB2B 4602925 YP_926551.1 CDS Sama_0673 NC_008700.1 829291 830355 D KEGG: ppr:PBPRB1679 hypothetical multidrug resistance protein; multidrug resistance protein 829291..830355 Shewanella amazonensis SB2B 4602926 YP_926552.1 CDS Sama_0674 NC_008700.1 830358 831434 D KEGG: ppr:PBPRB1678 hypothetical periplasmic linker protein; linker protein 830358..831434 Shewanella amazonensis SB2B 4602927 YP_926553.1 CDS Sama_0675 NC_008700.1 831444 834530 D KEGG: ppr:PBPRB1677 putative transporter, AcrB/D/F family; AcrB/AcrD/AcrF family transporter 831444..834530 Shewanella amazonensis SB2B 4602928 YP_926554.1 CDS Sama_0676 NC_008700.1 834840 835175 D KEGG: tdn:Tmden_1847 hypothetical protein; hypothetical protein 834840..835175 Shewanella amazonensis SB2B 4602929 YP_926555.1 CDS Sama_0677 NC_008700.1 835288 837207 D KEGG: son:SO3797 peptidase, U32 family; U32 family peptidase 835288..837207 Shewanella amazonensis SB2B 4602930 YP_926556.1 CDS Sama_0678 NC_008700.1 837351 837728 D KEGG: son:SO3796 hypothetical protein; hypothetical protein 837351..837728 Shewanella amazonensis SB2B 4602931 YP_926557.1 CDS Sama_0679 NC_008700.1 838103 841132 D KEGG: son:SO1309 hypothetical TonB-dependent receptor; putative TonB-dependent receptor 838103..841132 Shewanella amazonensis SB2B 4602932 YP_926558.1 CDS Sama_0680 NC_008700.1 841258 842772 R KEGG: son:SO4705 transcriptional regulator, putative; XRE family transcriptional regulator complement(841258..842772) Shewanella amazonensis SB2B 4602933 YP_926559.1 CDS Sama_0681 NC_008700.1 842929 843501 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 842929..843501 Shewanella amazonensis SB2B 4602934 YP_926560.1 CDS Sama_0682 NC_008700.1 843635 844309 R KEGG: eca:ECA2791 putative glutathione S-transferase; putative glutathione S-transferase complement(843635..844309) Shewanella amazonensis SB2B 4602935 YP_926561.1 CDS Sama_0683 NC_008700.1 844362 844652 R KEGG: ppr:PBPRB1101 hypothetical protein; hypothetical protein complement(844362..844652) Shewanella amazonensis SB2B 4602936 YP_926562.1 CDS Sama_0684 NC_008700.1 844739 846538 R KEGG: son:SO1388 aminopeptidase P, putative; aminopeptidase P complement(844739..846538) Shewanella amazonensis SB2B 4602937 YP_926563.1 CDS Sama_0685 NC_008700.1 846844 848097 D KEGG: cps:CPS_1700 hypothetical protein; hypothetical protein 846844..848097 Shewanella amazonensis SB2B 4602938 YP_926564.1 CDS Sama_0686 NC_008700.1 848184 848972 D KEGG: son:SO1389 ROK family protein; ROK family protein 848184..848972 Shewanella amazonensis SB2B 4602939 YP_926565.1 CDS Sama_0687 NC_008700.1 849027 851735 R KEGG: ava:Ava_4314 ankyrin; hypothetical protein complement(849027..851735) Shewanella amazonensis SB2B 4602940 YP_926566.1 CDS Sama_0688 NC_008700.1 852263 853474 D KEGG: sdn:Sden_0888 peptidase M24; peptidase M24 852263..853474 Shewanella amazonensis SB2B 4602941 YP_926567.1 CDS Sama_0689 NC_008700.1 853533 854003 R KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidyl-prolyl cis-trans isomerase complement(853533..854003) Shewanella amazonensis SB2B 4602942 YP_926568.1 CDS Sama_0690 NC_008700.1 854104 854457 R KEGG: cps:CPS_0148 cold-shock DNA-binding domain family protein; cold shock DNA-binding domain-containing protein complement(854104..854457) Shewanella amazonensis SB2B 4602943 YP_926569.1 CDS Sama_0691 NC_008700.1 854454 855599 R KEGG: son:SO1396 hypothetical protein; hypothetical protein complement(854454..855599) Shewanella amazonensis SB2B 4602944 YP_926570.1 CDS Sama_0692 NC_008700.1 855694 856635 R KEGG: son:SO3758 hypothetical protein; hypothetical protein complement(855694..856635) Shewanella amazonensis SB2B 4602945 YP_926571.1 CDS Sama_0693 NC_008700.1 856788 857765 D KEGG: son:SO3757 RuBisCo operon transcriptional regulator; RuBisCo operon transcriptional regulator 856788..857765 Shewanella amazonensis SB2B 4602946 YP_926572.1 CDS Sama_0694 NC_008700.1 858008 858559 D KEGG: vpa:VP2004 hypothetical protein; hypothetical protein 858008..858559 Shewanella amazonensis SB2B 4602947 YP_926573.1 CDS Sama_0695 NC_008700.1 858948 859550 D KEGG: son:SO3588 gpr1/fun34/YaaH family protein; gpr1/fun34/YaaH family protein 858948..859550 Shewanella amazonensis SB2B 4602948 YP_926574.1 CDS Sama_0696 NC_008700.1 859635 860246 R KEGG: vch:VC2747 hypothetical protein; hypothetical protein complement(859635..860246) Shewanella amazonensis SB2B 4602949 YP_926575.1 CDS Sama_0697 NC_008700.1 860337 861791 R KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; outer membrane protein and related peptidoglycan-associated (LipO)protein complement(860337..861791) Shewanella amazonensis SB2B 4602950 YP_926576.1 CDS Sama_0698 NC_008700.1 861843 863288 R KEGG: nwi:Nwi_1814 OmpA/MotB; Outer membrane protein-related peptidoglycan-associated (lipo)protein complement(861843..863288) Shewanella amazonensis SB2B 4602951 YP_926577.1 CDS Sama_0699 NC_008700.1 863425 864027 D KEGG: ilo:IL0155 response regulator, LuxR family (CheY-HTH); response regulator receiver protein 863425..864027 Shewanella amazonensis SB2B 4602952 YP_926578.1 CDS Sama_0700 NC_008700.1 864152 864424 D KEGG: ilo:IL0910 Flp/Fap pilin homolog; Flp/Fap pilin-like protein 864152..864424 Shewanella amazonensis SB2B 4602953 YP_926579.1 CDS Sama_0701 NC_008700.1 864499 864813 D KEGG: bxe:Bxe_B2914 hypothetical protein; hypothetical protein 864499..864813 Shewanella amazonensis SB2B 4602954 YP_926580.1 CDS Sama_0702 NC_008700.1 864848 866221 D KEGG: ilo:IL0909 uncharacterized secreted protein; hypothetical protein 864848..866221 Shewanella amazonensis SB2B 4602955 YP_926581.1 CDS Sama_0703 NC_008700.1 866231 867118 D KEGG: bxe:Bxe_B2916 hypothetical protein; hypothetical protein 866231..867118 Shewanella amazonensis SB2B 4602956 YP_926582.1 CDS Sama_0704 NC_008700.1 867115 867789 D hypothetical protein 867115..867789 Shewanella amazonensis SB2B 4602957 YP_926583.1 CDS Sama_0705 NC_008700.1 867786 867980 D hypothetical protein 867786..867980 Shewanella amazonensis SB2B 4602958 YP_926584.1 CDS Sama_0706 NC_008700.1 868003 868899 D KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB; Flp pilus assembly protein CpaB-like protein 868003..868899 Shewanella amazonensis SB2B 4602959 YP_926585.1 CDS Sama_0707 NC_008700.1 868944 870215 D KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; putative type II and III secretion system outermembrane protein, secretin 868944..870215 Shewanella amazonensis SB2B 4602960 YP_926586.1 CDS Sama_0708 NC_008700.1 870224 871993 D KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E; type II/IV secretion system protein E 870224..871993 Shewanella amazonensis SB2B 4602961 YP_926587.1 CDS Sama_0709 NC_008700.1 871986 872837 D KEGG: bxe:Bxe_B2922 putative type II secretion system protein F; putative type II secretion system protein F 871986..872837 Shewanella amazonensis SB2B 4602962 YP_926588.1 CDS Sama_0710 NC_008700.1 872846 873709 D KEGG: bxe:Bxe_B2923 putative type II secretion system protein F; putative type II secretion system protein F 872846..873709 Shewanella amazonensis SB2B 4602963 YP_926589.1 CDS Sama_0711 NC_008700.1 873711 874055 D KEGG: bba:Bd0471 putative secreted protein; hypothetical protein 873711..874055 Shewanella amazonensis SB2B 4602964 YP_926590.1 CDS Sama_0712 NC_008700.1 874043 874528 D KEGG: mac:MA1970 hypothetical protein; hypothetical protein 874043..874528 Shewanella amazonensis SB2B 4602965 YP_926591.1 CDS Sama_0713 NC_008700.1 874525 875211 D KEGG: bxe:Bxe_B2925 hypothetical protein; hypothetical protein 874525..875211 Shewanella amazonensis SB2B 4602966 YP_926592.1 CDS Sama_0714 NC_008700.1 875229 879392 D KEGG: hwa:HQ3601A cell surface calcium-binding acidic-repeat protein; hypothetical protein 875229..879392 Shewanella amazonensis SB2B 4602967 YP_926593.1 CDS Sama_0715 NC_008700.1 879449 879919 D hypothetical protein 879449..879919 Shewanella amazonensis SB2B 4602968 YP_926594.1 CDS Sama_0716 NC_008700.1 879995 880399 D hypothetical protein 879995..880399 Shewanella amazonensis SB2B 4602969 YP_926595.1 CDS Sama_0717 NC_008700.1 880485 882251 D KEGG: ilo:IL0291 hypothetical protein; hypothetical protein 880485..882251 Shewanella amazonensis SB2B 4602970 YP_926596.1 CDS Sama_0718 NC_008700.1 882536 883927 D hypothetical protein 882536..883927 Shewanella amazonensis SB2B 4602971 YP_926597.1 CDS Sama_0719 NC_008700.1 884021 884701 D hypothetical protein 884021..884701 Shewanella amazonensis SB2B 4602972 YP_926598.1 CDS Sama_0720 NC_008700.1 884742 885197 D hypothetical protein 884742..885197 Shewanella amazonensis SB2B 4602973 YP_926599.1 CDS Sama_0721 NC_008700.1 885318 886166 D KEGG: sdn:Sden_0706 protein of unknown function DUF583; cell shape determination protein CcmA 885318..886166 Shewanella amazonensis SB2B 4602974 YP_926600.1 CDS Sama_0722 NC_008700.1 886334 887218 R KEGG: ilo:IL1305 UspA-related nucleotide-binding protein; hypothetical protein complement(886334..887218) Shewanella amazonensis SB2B 4602975 YP_926601.1 CDS Sama_0723 NC_008700.1 887421 888908 R KEGG: son:SO3754 hypothetical protein; hypothetical protein complement(887421..888908) Shewanella amazonensis SB2B 4602976 YP_926602.1 CDS Sama_0724 NC_008700.1 888905 890341 R KEGG: tfu:Tfu_2363 putative zinc proteinase; Zn-dependent peptidase-like protein complement(888905..890341) Shewanella amazonensis SB2B 4602977 YP_926603.1 CDS Sama_0725 NC_008700.1 890446 891270 D KEGG: son:SO3749 hypothetical protein; hypothetical protein 890446..891270 Shewanella amazonensis SB2B 4602978 YP_926604.1 CDS Sama_0726 NC_008700.1 891361 892275 R KEGG: sdn:Sden_0707 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG protein complement(891361..892275) Shewanella amazonensis SB2B 4602979 YP_926605.1 CDS Sama_0727 NC_008700.1 892404 893924 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(892404..893924) Shewanella amazonensis SB2B 4602980 YP_926606.1 CDS Sama_0728 NC_008700.1 894026 896302 R KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein complement(894026..896302) Shewanella amazonensis SB2B 4602981 YP_926607.1 CDS Sama_0729 NC_008700.1 896674 898392 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 896674..898392 Shewanella amazonensis SB2B 4602982 YP_926608.1 CDS Sama_0730 NC_008700.1 898426 899373 R KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase complement(898426..899373) Shewanella amazonensis SB2B 4602983 YP_926609.1 CDS Sama_0731 NC_008700.1 899468 900898 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 899468..900898 Shewanella amazonensis SB2B 4602984 YP_926610.1 CDS Sama_0732 NC_008700.1 900898 901779 D KEGG: son:SO3744 hypothetical protein; hypothetical protein 900898..901779 Shewanella amazonensis SB2B 4602985 YP_926611.1 CDS Sama_0733 NC_008700.1 901924 902412 D KEGG: son:SO3743 transcriptional regulator, TetR family; TetR family transcriptional regulator 901924..902412 Shewanella amazonensis SB2B 4602986 YP_926612.1 CDS Sama_0734 NC_008700.1 902466 902732 R KEGG: cps:CPS_4118 hypothetical protein; hypothetical protein complement(902466..902732) Shewanella amazonensis SB2B 4602987 YP_926613.1 CDS Sama_0735 NC_008700.1 903011 903628 D KEGG: hch:HCH_04210 hypothetical protein; hypothetical protein 903011..903628 Shewanella amazonensis SB2B 4602988 YP_926614.1 CDS Sama_0736 NC_008700.1 903625 904713 D KEGG: jan:Jann_3255 rhomboid-like protein; hypothetical protein 903625..904713 Shewanella amazonensis SB2B 4602989 YP_926615.1 CDS Sama_0737 NC_008700.1 904781 906094 R KEGG: sdn:Sden_0711 putative esterase; putative esterase complement(904781..906094) Shewanella amazonensis SB2B 4602990 YP_926616.1 CDS Sama_0738 NC_008700.1 906249 906671 D KEGG: son:SO0452 thioredoxin 2; thioredoxin 2 906249..906671 Shewanella amazonensis SB2B 4602991 YP_926617.1 CDS Sama_0739 NC_008700.1 906748 907623 D KEGG: son:SO1154 hypothetical protein; hypothetical protein 906748..907623 Shewanella amazonensis SB2B 4602992 YP_926618.1 CDS mtgA NC_008700.1 907739 908476 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 907739..908476 Shewanella amazonensis SB2B 4602993 YP_926619.1 CDS Sama_0741 NC_008700.1 908537 909067 R KEGG: pae:PA0085 hypothetical protein; hemolysin-coregulated protein complement(908537..909067) Shewanella amazonensis SB2B 4602994 YP_926620.1 CDS Sama_0742 NC_008700.1 909293 909634 D hypothetical protein 909293..909634 Shewanella amazonensis SB2B 4602995 YP_926621.1 CDS Sama_0743 NC_008700.1 909754 910173 D KEGG: pae:PA2706 hypothetical protein; hypothetical protein 909754..910173 Shewanella amazonensis SB2B 4602996 YP_926622.1 CDS Sama_0744 NC_008700.1 910321 915498 R KEGG: son:SO4539 serine protease, subtilase family; serine protease complement(910321..915498) Shewanella amazonensis SB2B 4602997 YP_926623.1 CDS Sama_0745 NC_008700.1 915907 918123 R KEGG: son:SO0725 catalase/peroxidase HPI; catalase complement(915907..918123) Shewanella amazonensis SB2B 4602998 YP_926624.1 CDS Sama_0746 NC_008700.1 918563 919456 D KEGG: mag:amb2742 permease of the drug/metabolite transporter superfamily; DMT family permease 918563..919456 Shewanella amazonensis SB2B 4602999 YP_926625.1 CDS Sama_0747 NC_008700.1 919576 923439 D KEGG: xcb:XC_1756 two-component system sensor protein; signal transduction histidine kinase-like protein 919576..923439 Shewanella amazonensis SB2B 4603000 YP_926626.1 CDS Sama_0748 NC_008700.1 923436 924374 D KEGG: pat:Patl_2089 diguanylate cyclase; response regulator receiver protein 923436..924374 Shewanella amazonensis SB2B 4603001 YP_926627.1 CDS Sama_0749 NC_008700.1 924455 924718 R KEGG: son:SO0721 hypothetical protein; hypothetical protein complement(924455..924718) Shewanella amazonensis SB2B 4603002 YP_926628.1 CDS Sama_0750 NC_008700.1 924874 925872 R KEGG: son:SO1771.2 hypothetical catalase; catalase-like protein complement(924874..925872) Shewanella amazonensis SB2B 4603003 YP_926629.1 CDS Sama_0751 NC_008700.1 926250 927581 D KEGG: vfi:VF0971 GTP-binding protein HflX; GTP-binding protein HflX 926250..927581 Shewanella amazonensis SB2B 4603004 YP_926630.1 CDS Sama_0752 NC_008700.1 927691 929094 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(927691..929094) Shewanella amazonensis SB2B 4603005 YP_926631.1 CDS Sama_0753 NC_008700.1 929596 931323 D KEGG: pfo:Pfl_2272 hypothetical protein; hypothetical protein 929596..931323 Shewanella amazonensis SB2B 4603006 YP_926632.1 CDS Sama_0754 NC_008700.1 931615 933336 R KEGG: ava:Ava_B0104 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS complement(931615..933336) Shewanella amazonensis SB2B 4603007 YP_926633.1 CDS Sama_0755 NC_008700.1 933520 935586 R KEGG: son:SO4537 peptidase, putative; peptidase complement(933520..935586) Shewanella amazonensis SB2B 4603008 YP_926634.1 CDS Sama_0756 NC_008700.1 935916 936875 R hypothetical protein complement(935916..936875) Shewanella amazonensis SB2B 4603009 YP_926635.1 CDS metH NC_008700.1 938190 941930 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(938190..941930) Shewanella amazonensis SB2B 4606037 YP_926636.1 CDS Sama_0759 NC_008700.1 942305 942931 D KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; alpha-ribazole-5'-phosphate phosphatase 942305..942931 Shewanella amazonensis SB2B 4603011 YP_926637.1 CDS Sama_0760 NC_008700.1 943264 944079 D KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; iron-compound ABC transporter ATP-binding protein 943264..944079 Shewanella amazonensis SB2B 4603012 YP_926638.1 CDS Sama_0761 NC_008700.1 944076 945119 D KEGG: son:SO1034 iron-compound ABC transporter, permease protein; iron-compound ABC transporter permease 944076..945119 Shewanella amazonensis SB2B 4603013 YP_926639.1 CDS cobT NC_008700.1 945129 946163 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 945129..946163 Shewanella amazonensis SB2B 4603014 YP_926640.1 CDS Sama_0763 NC_008700.1 946177 946959 D KEGG: son:SO1036 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 946177..946959 Shewanella amazonensis SB2B 4603015 YP_926641.1 CDS Sama_0764 NC_008700.1 946956 947501 D KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobinamide kinase/cobinamide phosphate guanylyltransferase 946956..947501 Shewanella amazonensis SB2B 4603016 YP_926642.1 CDS Sama_0765 NC_008700.1 947505 949013 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 947505..949013 Shewanella amazonensis SB2B 4603017 YP_926643.1 CDS Sama_0766 NC_008700.1 949035 949634 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 949035..949634 Shewanella amazonensis SB2B 4603018 YP_926644.1 CDS Sama_0767 NC_008700.1 950251 951891 D KEGG: pae:PA2920 probable chemotaxis transducer; putative methyl-accepting chemotaxis sensory transducer 950251..951891 Shewanella amazonensis SB2B 4603019 YP_926645.1 CDS Sama_0768 NC_008700.1 951945 952535 R KEGG: son:SO1187 hypothetical protein; hypothetical protein complement(951945..952535) Shewanella amazonensis SB2B 4603020 YP_926646.1 CDS Sama_0769 NC_008700.1 952789 954165 D KEGG: sdn:Sden_0656 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 952789..954165 Shewanella amazonensis SB2B 4603021 YP_926647.1 CDS Sama_0770 NC_008700.1 954211 954852 D KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase 954211..954852 Shewanella amazonensis SB2B 4603022 YP_926648.1 CDS Sama_0771 NC_008700.1 954860 955390 D KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 954860..955390 Shewanella amazonensis SB2B 4603023 YP_926649.1 CDS Sama_0772 NC_008700.1 955486 956445 D KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 955486..956445 Shewanella amazonensis SB2B 4603024 YP_926650.1 CDS Sama_0773 NC_008700.1 956447 957217 D KEGG: sdn:Sden_0652 ABC-2; ABC-type polysaccharide/polyol phosphate export systems permease 956447..957217 Shewanella amazonensis SB2B 4603025 YP_926651.1 CDS Sama_0774 NC_008700.1 957265 957765 R KEGG: son:SO0868 hypothetical protein; hypothetical protein complement(957265..957765) Shewanella amazonensis SB2B 4603026 YP_926652.1 CDS panC NC_008700.1 957957 958802 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(957957..958802) Shewanella amazonensis SB2B 4603027 YP_926653.1 CDS panB NC_008700.1 958810 959649 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(958810..959649) Shewanella amazonensis SB2B 4603028 YP_926654.1 CDS Sama_0777 NC_008700.1 959663 960151 R KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase complement(959663..960151) Shewanella amazonensis SB2B 4603029 YP_926655.1 CDS Sama_0778 NC_008700.1 960154 961428 R KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); tRNA nucleotidyltransferase complement(960154..961428) Shewanella amazonensis SB2B 4603030 YP_926656.1 CDS Sama_0779 NC_008700.1 961689 962561 R KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamyl-tRNA synthetase complement(961689..962561) Shewanella amazonensis SB2B 4603031 YP_926657.1 CDS Sama_0780 NC_008700.1 962633 963076 R KEGG: son:SO0874 DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(962633..963076) Shewanella amazonensis SB2B 4603032 YP_926658.1 CDS Sama_0781 NC_008700.1 963235 963948 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(963235..963948) Shewanella amazonensis SB2B 4603033 YP_926659.1 CDS Sama_0782 NC_008700.1 964251 965534 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 964251..965534 Shewanella amazonensis SB2B 4603034 YP_926660.1 CDS Sama_0783 NC_008700.1 965648 967426 R KEGG: sdn:Sden_0809 GGDEF domain protein; diguanylate cyclase complement(965648..967426) Shewanella amazonensis SB2B 4603035 YP_926661.1 CDS Sama_0784 NC_008700.1 967398 967634 R KEGG: sdn:Sden_0807 hypothetical protein; hypothetical protein complement(967398..967634) Shewanella amazonensis SB2B 4603036 YP_926662.1 CDS Sama_0785 NC_008700.1 967645 968490 R KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase complement(967645..968490) Shewanella amazonensis SB2B 4603037 YP_926663.1 CDS Sama_0786 NC_008700.1 968560 969069 R KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase; acetyltransferase complement(968560..969069) Shewanella amazonensis SB2B 4603038 YP_926664.1 CDS Sama_0787 NC_008700.1 969066 970403 R KEGG: sdn:Sden_0804 peptidase A1, pepsin; peptidase A1, pepsin complement(969066..970403) Shewanella amazonensis SB2B 4603039 YP_926665.1 CDS Sama_0788 NC_008700.1 970492 971304 R KEGG: hch:HCH_03990 predicted transcriptional regulator; transcriptional regulator complement(970492..971304) Shewanella amazonensis SB2B 4603040 YP_926666.1 CDS Sama_0789 NC_008700.1 971562 972980 D KEGG: hch:HCH_01841 aspartate ammonia-lyase; aspartate ammonia-lyase 971562..972980 Shewanella amazonensis SB2B 4603041 YP_926667.1 CDS valS NC_008700.1 973085 975946 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(973085..975946) Shewanella amazonensis SB2B 4603042 YP_926668.1 CDS Sama_0791 NC_008700.1 975962 976417 R KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III subunit chi complement(975962..976417) Shewanella amazonensis SB2B 4603043 YP_926669.1 CDS Sama_0792 NC_008700.1 976548 977186 R KEGG: vfi:VFA0088 transcriptional regulator; TetR family transcriptional regulator complement(976548..977186) Shewanella amazonensis SB2B 4603044 YP_926670.1 CDS Sama_0793 NC_008700.1 977306 978382 D KEGG: vfi:VFA0087 outer membrane protein RomA; outer membrane protein RomA 977306..978382 Shewanella amazonensis SB2B 4603045 YP_926671.1 CDS Sama_0794 NC_008700.1 978676 979479 D KEGG: hypothetical protein; hypothetical protein 978676..979479 Shewanella amazonensis SB2B 4603046 YP_926672.1 CDS Sama_0795 NC_008700.1 979556 981064 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(979556..981064) Shewanella amazonensis SB2B 4603047 YP_926673.1 CDS Sama_0796 NC_008700.1 981287 982396 D KEGG: son:SO1369 hypothetical protein; hypothetical protein 981287..982396 Shewanella amazonensis SB2B 4603048 YP_926674.1 CDS Sama_0797 NC_008700.1 982393 983451 D KEGG: son:SO1370 hypothetical protein; hypothetical protein 982393..983451 Shewanella amazonensis SB2B 4603049 YP_926675.1 CDS Sama_0798 NC_008700.1 983611 984123 R KEGG: sdn:Sden_0876 conserved hypothetical proteinF; hypothetical protein complement(983611..984123) Shewanella amazonensis SB2B 4603050 YP_926676.1 CDS Sama_0799 NC_008700.1 984127 984378 R KEGG: son:SO1372 hypothetical protein; hypothetical protein complement(984127..984378) Shewanella amazonensis SB2B 4603051 YP_926677.1 CDS Sama_0800 NC_008700.1 984400 984750 R KEGG: son:SO1373 hypothetical protein; hypothetical protein complement(984400..984750) Shewanella amazonensis SB2B 4603052 YP_926678.1 CDS Sama_0801 NC_008700.1 984758 985237 R KEGG: son:SO1374 acetyltransferase, GNAT family; acetyltransferase complement(984758..985237) Shewanella amazonensis SB2B 4603053 YP_926679.1 CDS Sama_0802 NC_008700.1 985300 986781 R KEGG: son:SO1375 carboxypeptidase; carboxypeptidase Taq complement(985300..986781) Shewanella amazonensis SB2B 4603054 YP_926680.1 CDS Sama_0803 NC_008700.1 986935 987570 D KEGG: son:SO1376 hypothetical protein; hypothetical protein 986935..987570 Shewanella amazonensis SB2B 4603055 YP_926681.1 CDS Sama_0804 NC_008700.1 987597 989354 D KEGG: son:SO1377 hypothetical protein; hypothetical protein 987597..989354 Shewanella amazonensis SB2B 4603056 YP_926682.1 CDS Sama_0805 NC_008700.1 989464 990213 R KEGG: sdn:Sden_0883 hypothetical protein; hypothetical protein complement(989464..990213) Shewanella amazonensis SB2B 4603057 YP_926683.1 CDS Sama_0806 NC_008700.1 990255 990905 R KEGG: son:SO1380 hypothetical protein; hypothetical protein complement(990255..990905) Shewanella amazonensis SB2B 4603058 YP_926684.1 CDS Sama_0807 NC_008700.1 990955 991638 R KEGG: sdn:Sden_0885 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen complement(990955..991638) Shewanella amazonensis SB2B 4603059 YP_926685.1 CDS Sama_0808 NC_008700.1 991771 993069 R KEGG: sfr:Sfri_3068 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(991771..993069) Shewanella amazonensis SB2B 4603060 YP_926686.1 CDS Sama_0809 NC_008700.1 993354 994589 D KEGG: pha:PSHAa0134 hypothetical protein; putative diguanylate phosphodiesterase 993354..994589 Shewanella amazonensis SB2B 4603061 YP_926687.1 CDS Sama_0810 NC_008700.1 994884 995837 D KEGG: son:SO3386 hypothetical protein; hypothetical protein 994884..995837 Shewanella amazonensis SB2B 4603062 YP_926688.1 CDS Sama_0811 NC_008700.1 995865 997292 D KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 995865..997292 Shewanella amazonensis SB2B 4603063 YP_926689.1 CDS Sama_0812 NC_008700.1 997296 997799 D KEGG: son:SO3383 transcriptional regulator-related protein; transcriptional regulator-like protein 997296..997799 Shewanella amazonensis SB2B 4603064 YP_926690.1 CDS Sama_0813 NC_008700.1 997799 998560 D KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 997799..998560 Shewanella amazonensis SB2B 4603065 YP_926691.1 CDS Sama_0814 NC_008700.1 998630 999892 D KEGG: son:SO3381 hypothetical protein; hypothetical protein 998630..999892 Shewanella amazonensis SB2B 4603066 YP_926692.1 CDS Sama_0815 NC_008700.1 999889 1000683 D KEGG: son:SO3380 hypothetical protein; hypothetical protein 999889..1000683 Shewanella amazonensis SB2B 4603067 YP_926693.1 CDS Sama_0816 NC_008700.1 1000686 1001915 D KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1000686..1001915 Shewanella amazonensis SB2B 4603068 YP_926694.1 CDS Sama_0817 NC_008700.1 1001932 1002441 D KEGG: son:SO3378 hypothetical protein; hypothetical protein 1001932..1002441 Shewanella amazonensis SB2B 4603069 YP_926695.1 CDS Sama_0818 NC_008700.1 1002432 1002983 D KEGG: son:SO3377 hypothetical protein; hypothetical protein 1002432..1002983 Shewanella amazonensis SB2B 4603070 YP_926696.1 CDS Sama_0819 NC_008700.1 1002971 1003492 D KEGG: son:SO3376 hypothetical protein; hypothetical protein 1002971..1003492 Shewanella amazonensis SB2B 4603071 YP_926697.1 CDS Sama_0820 NC_008700.1 1003582 1004358 R KEGG: sdn:Sden_0757 lipoprotein, putative; putative lipoprotein complement(1003582..1004358) Shewanella amazonensis SB2B 4603072 YP_926698.1 CDS Sama_0821 NC_008700.1 1004610 1004948 D KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidyl-prolyl cis-trans isomerase FkbP 1004610..1004948 Shewanella amazonensis SB2B 4603073 YP_926699.1 CDS Sama_0822 NC_008700.1 1005145 1006518 D KEGG: pae:PA4470 fumarate hydratase; fumarate hydratase 1005145..1006518 Shewanella amazonensis SB2B 4603074 YP_926700.1 CDS Sama_0823 NC_008700.1 1006839 1008701 R KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 factor complement(1006839..1008701) Shewanella amazonensis SB2B 4605933 YP_926701.1 CDS Sama_0824 NC_008700.1 1008819 1010549 R KEGG: son:SO1286 DNA primase; DNA primase complement(1008819..1010549) Shewanella amazonensis SB2B 4603076 YP_926702.1 CDS Sama_0825 NC_008700.1 1010631 1011074 R KEGG: son:SO1287 hypothetical protein; hypothetical protein complement(1010631..1011074) Shewanella amazonensis SB2B 4603077 YP_926703.1 CDS rpsU NC_008700.1 1011081 1011296 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1011081..1011296) Shewanella amazonensis SB2B 4603078 YP_926704.1 CDS Sama_0827 NC_008700.1 1011529 1012542 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1011529..1012542 Shewanella amazonensis SB2B 4603079 YP_926705.1 CDS Sama_0828 NC_008700.1 1012668 1013255 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1012668..1013255) Shewanella amazonensis SB2B 4603080 YP_926706.1 CDS Sama_0829 NC_008700.1 1013521 1013880 D KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase 1013521..1013880 Shewanella amazonensis SB2B 4603081 YP_926707.1 CDS Sama_0830 NC_008700.1 1013883 1014386 D KEGG: sdn:Sden_2827 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1013883..1014386 Shewanella amazonensis SB2B 4603082 YP_926708.1 CDS Sama_0831 NC_008700.1 1014399 1015199 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1014399..1015199 Shewanella amazonensis SB2B 4603083 YP_926709.1 CDS Sama_0832 NC_008700.1 1015265 1016080 D KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A 1015265..1016080 Shewanella amazonensis SB2B 4603084 YP_926710.1 CDS Sama_0833 NC_008700.1 1016164 1016427 R KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein complement(1016164..1016427) Shewanella amazonensis SB2B 4603085 YP_926711.1 CDS Sama_0834 NC_008700.1 1016610 1017893 R KEGG: sdn:Sden_2823 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase complement(1016610..1017893) Shewanella amazonensis SB2B 4603086 YP_926712.1 CDS Sama_0835 NC_008700.1 1018134 1019975 D KEGG: sdn:Sden_2822 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1018134..1019975 Shewanella amazonensis SB2B 4603087 YP_926713.1 CDS Sama_0836 NC_008700.1 1019975 1021087 D KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B 1019975..1021087 Shewanella amazonensis SB2B 4603088 YP_926714.1 CDS Sama_0837 NC_008700.1 1021168 1022415 R KEGG: sdn:Sden_2820 citrate transporter; citrate transporter complement(1021168..1022415) Shewanella amazonensis SB2B 4603089 YP_926715.1 CDS Sama_0838 NC_008700.1 1022935 1023120 D hypothetical protein 1022935..1023120 Shewanella amazonensis SB2B 4603090 YP_926716.1 CDS Sama_0839 NC_008700.1 1023262 1024545 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1023262..1024545) Shewanella amazonensis SB2B 4603091 YP_926717.1 CDS Sama_0840 NC_008700.1 1024575 1025594 R Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase complement(1024575..1025594) Shewanella amazonensis SB2B 4603092 YP_926718.1 CDS Sama_0841 NC_008700.1 1025735 1027450 R KEGG: son:SO1302 chloride channel; chloride channel complement(1025735..1027450) Shewanella amazonensis SB2B 4603093 YP_926719.1 CDS Sama_0842 NC_008700.1 1027560 1028363 D KEGG: shm:Shewmr7_2972 hypothetical protein; hypothetical protein 1027560..1028363 Shewanella amazonensis SB2B 4603094 YP_926720.1 CDS Sama_0843 NC_008700.1 1028356 1028706 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1028356..1028706 Shewanella amazonensis SB2B 4603095 YP_926721.1 CDS Sama_0844 NC_008700.1 1028794 1029216 R KEGG: son:SO1305 hypothetical protein; hypothetical protein complement(1028794..1029216) Shewanella amazonensis SB2B 4603096 YP_926722.1 CDS Sama_0845 NC_008700.1 1029230 1029682 R KEGG: sdn:Sden_2813 hypothetical protein; hypothetical protein complement(1029230..1029682) Shewanella amazonensis SB2B 4603097 YP_926723.1 CDS Sama_0846 NC_008700.1 1029743 1032268 R KEGG: son:SO1310 hypothetical protein; hypothetical protein complement(1029743..1032268) Shewanella amazonensis SB2B 4603098 YP_926724.1 CDS Sama_0847 NC_008700.1 1032488 1034590 D KEGG: son:SO1312 TolB domain protein; periplasmic component of the Tol biopolymer transport system-like protein 1032488..1034590 Shewanella amazonensis SB2B 4603099 YP_926725.1 CDS anmK NC_008700.1 1034646 1035755 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1034646..1035755) Shewanella amazonensis SB2B 4603100 YP_926726.1 CDS Sama_0849 NC_008700.1 1035752 1037140 R KEGG: son:SO1314 peptidase, M23/M37 family; M24/M37 family peptidase complement(1035752..1037140) Shewanella amazonensis SB2B 4603101 YP_926727.1 CDS Sama_0850 NC_008700.1 1037269 1038468 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1037269..1038468 Shewanella amazonensis SB2B 4603102 YP_926728.1 CDS Sama_0851 NC_008700.1 1038566 1039039 R KEGG: son:SO1318 hypothetical protein; hypothetical protein complement(1038566..1039039) Shewanella amazonensis SB2B 4603103 YP_926729.1 CDS Sama_0852 NC_008700.1 1039043 1039666 R KEGG: son:SO1319 hypothetical protein; hypothetical protein complement(1039043..1039666) Shewanella amazonensis SB2B 4603104 YP_926730.1 CDS Sama_0853 NC_008700.1 1039663 1040052 R KEGG: son:SO1320 hypothetical protein; hypothetical protein complement(1039663..1040052) Shewanella amazonensis SB2B 4603105 YP_926731.1 CDS Sama_0854 NC_008700.1 1040123 1041112 R KEGG: son:SO1321 CobD-related protein; CobD-like protein complement(1040123..1041112) Shewanella amazonensis SB2B 4603106 YP_926732.1 CDS Sama_0855 NC_008700.1 1041113 1041868 R KEGG: sdn:Sden_2801 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase complement(1041113..1041868) Shewanella amazonensis SB2B 4603107 YP_926733.1 CDS gltD NC_008700.1 1041950 1043368 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1041950..1043368) Shewanella amazonensis SB2B 4603108 YP_926734.1 CDS gltB NC_008700.1 1043376 1047827 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(1043376..1047827) Shewanella amazonensis SB2B 4603109 YP_926735.1 CDS Sama_0858 NC_008700.1 1048333 1049286 D KEGG: son:SO1326 hypothetical protein; hypothetical protein 1048333..1049286 Shewanella amazonensis SB2B 4603110 YP_926736.1 CDS Sama_0859 NC_008700.1 1049465 1049830 D KEGG: sdn:Sden_2789 Hpt; hypothetical protein 1049465..1049830 Shewanella amazonensis SB2B 4603111 YP_926737.1 CDS Sama_0860 NC_008700.1 1050167 1051138 D KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator 1050167..1051138 Shewanella amazonensis SB2B 4603112 YP_926738.1 CDS Sama_0861 NC_008700.1 1051168 1052244 R KEGG: son:SO1329 adenylate cyclase-related protein; adenylate cyclase-like protein complement(1051168..1052244) Shewanella amazonensis SB2B 4603113 YP_926739.1 CDS Sama_0862 NC_008700.1 1052366 1053040 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1052366..1053040) Shewanella amazonensis SB2B 4603114 YP_926740.1 CDS Sama_0863 NC_008700.1 1053718 1054254 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1053718..1054254 Shewanella amazonensis SB2B 4603115 YP_926741.1 CDS Sama_0864 NC_008700.1 1054294 1056528 D KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1054294..1056528 Shewanella amazonensis SB2B 4603116 YP_926742.1 CDS Sama_0865 NC_008700.1 1056627 1057394 D KEGG: son:SO1333 hypothetical protein; hypothetical protein 1056627..1057394 Shewanella amazonensis SB2B 4603117 YP_926743.1 CDS Sama_0866 NC_008700.1 1057435 1058241 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1057435..1058241 Shewanella amazonensis SB2B 4603118 YP_926744.1 CDS thyA NC_008700.1 1058241 1059035 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1058241..1059035 Shewanella amazonensis SB2B 4603119 YP_926745.1 CDS nhaA NC_008700.1 1059157 1060332 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1059157..1060332 Shewanella amazonensis SB2B 4603120 YP_926746.1 CDS Sama_0869 NC_008700.1 1060329 1060712 D KEGG: son:SO1337 hypothetical protein; hypothetical protein 1060329..1060712 Shewanella amazonensis SB2B 4603121 YP_926747.1 CDS nhaR NC_008700.1 1060712 1061620 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1060712..1061620 Shewanella amazonensis SB2B 4603122 YP_926748.1 CDS Sama_0871 NC_008700.1 1061729 1061968 D KEGG: son:SO1339 hypothetical protein; hypothetical protein 1061729..1061968 Shewanella amazonensis SB2B 4603123 YP_926749.1 CDS Sama_0872 NC_008700.1 1061949 1062374 D KEGG: son:SO1340 hypothetical protein; hypothetical protein 1061949..1062374 Shewanella amazonensis SB2B 4603124 YP_926750.1 CDS Sama_0873 NC_008700.1 1062349 1063956 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1062349..1063956) Shewanella amazonensis SB2B 4603125 YP_926751.1 CDS Sama_0874 NC_008700.1 1064144 1064722 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1064144..1064722 Shewanella amazonensis SB2B 4603126 YP_926752.1 CDS Sama_0875 NC_008700.1 1064777 1065373 D KEGG: son:SO1343 sigma-E factor negative regulatory protein; sigma-E factor negative regulatory protein 1064777..1065373 Shewanella amazonensis SB2B 4603127 YP_926753.1 CDS Sama_0876 NC_008700.1 1065384 1066322 D KEGG: son:SO1344 sigma-E factor regulatory protein RseB; putative sigma E regulatory protein, MucB/RseB 1065384..1066322 Shewanella amazonensis SB2B 4603128 YP_926754.1 CDS Sama_0877 NC_008700.1 1066319 1066798 D KEGG: son:SO1345 sigma-E factor regulatory protein RseC; sigma-E factor regulatory protein RseC 1066319..1066798 Shewanella amazonensis SB2B 4603129 YP_926755.1 CDS Sama_0878 NC_008700.1 1066895 1068685 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1066895..1068685 Shewanella amazonensis SB2B 4603130 YP_926756.1 CDS Sama_0879 NC_008700.1 1068870 1069787 D KEGG: son:SO1347 signal peptidase I; Signal peptidase I 1068870..1069787 Shewanella amazonensis SB2B 4603131 YP_926757.1 CDS rnc NC_008700.1 1069793 1070473 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1069793..1070473 Shewanella amazonensis SB2B 4603132 YP_926758.1 CDS era NC_008700.1 1070470 1071468 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1070470..1071468 Shewanella amazonensis SB2B 4603133 YP_926759.1 CDS Sama_0882 NC_008700.1 1071482 1072156 D KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 1071482..1072156 Shewanella amazonensis SB2B 4603134 YP_926760.1 CDS Sama_0883 NC_008700.1 1072270 1073007 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1072270..1073007 Shewanella amazonensis SB2B 4603135 YP_926761.1 CDS acpS NC_008700.1 1073007 1073384 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1073007..1073384 Shewanella amazonensis SB2B 4603136 YP_926762.1 CDS Sama_0885 NC_008700.1 1073550 1074077 D KEGG: sdn:Sden_2761 protein of unknown function DUF962; hypothetical protein 1073550..1074077 Shewanella amazonensis SB2B 4603137 YP_926763.1 CDS Sama_0886 NC_008700.1 1074108 1075397 R KEGG: sdn:Sden_2757 protein of unknown function DUF21; hypothetical protein complement(1074108..1075397) Shewanella amazonensis SB2B 4603138 YP_926764.1 CDS Sama_0887 NC_008700.1 1075492 1076280 R KEGG: son:SO1355 hypothetical protein; hypothetical protein complement(1075492..1076280) Shewanella amazonensis SB2B 4603139 YP_926765.1 CDS Sama_0888 NC_008700.1 1076533 1077906 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1076533..1077906 Shewanella amazonensis SB2B 4603140 YP_926766.1 CDS rpsP NC_008700.1 1078064 1078315 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1078064..1078315 Shewanella amazonensis SB2B 4603141 YP_926767.1 CDS rimM NC_008700.1 1078336 1078866 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1078336..1078866 Shewanella amazonensis SB2B 4603142 YP_926768.1 CDS trmD NC_008700.1 1078882 1079634 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1078882..1079634 Shewanella amazonensis SB2B 4603143 YP_926769.1 CDS rplS NC_008700.1 1079662 1080015 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1079662..1080015 Shewanella amazonensis SB2B 4603144 YP_926770.1 CDS Sama_0893 NC_008700.1 1080314 1081405 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1080314..1081405 Shewanella amazonensis SB2B 4603145 YP_926771.1 CDS tyrA NC_008700.1 1081419 1082558 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1081419..1082558 Shewanella amazonensis SB2B 4603146 YP_926772.1 CDS Sama_0895 NC_008700.1 1082738 1084402 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1082738..1084402 Shewanella amazonensis SB2B 4603147 YP_926773.1 CDS Sama_0896 NC_008700.1 1084460 1085530 D KEGG: son:SO1364 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1084460..1085530 Shewanella amazonensis SB2B 4603148 YP_926774.1 CDS Sama_0897 NC_008700.1 1085678 1086052 D KEGG: sdn:Sden_2748 hypothetical protein; hypothetical protein 1085678..1086052 Shewanella amazonensis SB2B 4603149 YP_926775.1 CDS Sama_0898 NC_008700.1 1086123 1088102 R KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase; prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase complement(1086123..1088102) Shewanella amazonensis SB2B 4603150 YP_926776.1 CDS Sama_0899 NC_008700.1 1088371 1088727 R KEGG: son:SO3422 ribosomal subunit interface protein; ribosomal subunit interface protein complement(1088371..1088727) Shewanella amazonensis SB2B 4603151 YP_926777.1 CDS Sama_0900 NC_008700.1 1089018 1089686 D KEGG: son:SO3421 b-type cytochrome, putative; b-type cytochrome 1089018..1089686 Shewanella amazonensis SB2B 4603152 YP_926778.1 CDS Sama_0901 NC_008700.1 1089750 1090193 R KEGG: sdn:Sden_2744 cytochrome c, class II; cytochrome c, class II complement(1089750..1090193) Shewanella amazonensis SB2B 4603153 YP_926779.1 CDS Sama_0902 NC_008700.1 1090379 1090675 D KEGG: sdn:Sden_2743 Trp repressor; putative Trp operon repressor 1090379..1090675 Shewanella amazonensis SB2B 4603154 YP_926780.1 CDS Sama_0903 NC_008700.1 1090676 1091053 R KEGG: sdn:Sden_2742 hypothetical protein; hypothetical protein complement(1090676..1091053) Shewanella amazonensis SB2B 4603155 YP_926781.1 CDS Sama_0904 NC_008700.1 1091171 1091782 R KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidyl-prolyl cis-trans isomerase SlyD complement(1091171..1091782) Shewanella amazonensis SB2B 4603156 YP_926782.1 CDS thrA NC_008700.1 1092368 1094833 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1092368..1094833 Shewanella amazonensis SB2B 4603157 YP_926783.1 CDS Sama_0906 NC_008700.1 1094830 1095774 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1094830..1095774 Shewanella amazonensis SB2B 4603158 YP_926784.1 CDS Sama_0907 NC_008700.1 1095784 1097070 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1095784..1097070 Shewanella amazonensis SB2B 4603159 YP_926785.1 CDS Sama_0908 NC_008700.1 1097208 1099250 D KEGG: mag:amb3313 signal transduction histidine kinase; signal transduction histidine kinase-like protein 1097208..1099250 Shewanella amazonensis SB2B 4603160 YP_926786.1 CDS Sama_0909 NC_008700.1 1099255 1100349 D KEGG: dar:Daro_3172 response regulator receiver; response regulator receiver protein 1099255..1100349 Shewanella amazonensis SB2B 4603161 YP_926787.1 CDS Sama_0910 NC_008700.1 1100464 1101003 D KEGG: son:SO3549 hypothetical protein; hypothetical protein 1100464..1101003 Shewanella amazonensis SB2B 4603162 YP_926788.1 CDS Sama_0911 NC_008700.1 1101061 1101246 R KEGG: son:SO3548 hypothetical protein; hypothetical protein complement(1101061..1101246) Shewanella amazonensis SB2B 4603163 YP_926789.1 CDS pgi NC_008700.1 1101444 1103081 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1101444..1103081) Shewanella amazonensis SB2B 4603164 YP_926790.1 CDS Sama_0913 NC_008700.1 1103101 1104054 R KEGG: son:SO3546 transaldolase; transaldolase B complement(1103101..1104054) Shewanella amazonensis SB2B 4603165 YP_926791.1 CDS Sama_0914 NC_008700.1 1104264 1105370 R KEGG: sdn:Sden_2732 OmpA/MotB; OmpA/MotB protein complement(1104264..1105370) Shewanella amazonensis SB2B 4603166 YP_926792.1 CDS Sama_0915 NC_008700.1 1105589 1107955 R KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase complement(1105589..1107955) Shewanella amazonensis SB2B 4603167 YP_926793.1 CDS Sama_0916 NC_008700.1 1108397 1109839 D KEGG: son:SO3541 sodium:alanine symporter family protein; sodium:alanine symporter family protein 1108397..1109839 Shewanella amazonensis SB2B 4603168 YP_926794.1 CDS Sama_0917 NC_008700.1 1109937 1110710 D KEGG: vch:VC2355 hypothetical protein; hypothetical protein 1109937..1110710 Shewanella amazonensis SB2B 4603169 YP_926795.1 CDS Sama_0918 NC_008700.1 1110876 1111322 D KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1110876..1111322 Shewanella amazonensis SB2B 4603170 YP_926796.1 CDS Sama_0919 NC_008700.1 1111402 1112805 R KEGG: sdn:Sden_2728 peptidase M28; peptidase M28 complement(1111402..1112805) Shewanella amazonensis SB2B 4603171 YP_926797.1 CDS Sama_0920 NC_008700.1 1112941 1113237 D KEGG: son:SO3538 transcriptional regulator HlyU; transcriptional regulator HlyU 1112941..1113237 Shewanella amazonensis SB2B 4603172 YP_926798.1 CDS rpsT NC_008700.1 1113292 1113558 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1113292..1113558) Shewanella amazonensis SB2B 4603173 YP_926799.1 CDS Sama_0922 NC_008700.1 1113812 1115377 D KEGG: sdn:Sden_2725 integral membrane protein MviN; integral membrane protein MviN 1113812..1115377 Shewanella amazonensis SB2B 4603174 YP_926800.1 CDS Sama_0923 NC_008700.1 1115436 1116371 D KEGG: son:SO3533 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1115436..1116371 Shewanella amazonensis SB2B 4603175 YP_926801.1 CDS ileS NC_008700.1 1116414 1119236 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1116414..1119236 Shewanella amazonensis SB2B 4603176 YP_926802.1 CDS lspA NC_008700.1 1119245 1119751 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1119245..1119751 Shewanella amazonensis SB2B 4603177 YP_926803.1 CDS Sama_0926 NC_008700.1 1119755 1120174 D KEGG: sdn:Sden_2721 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1119755..1120174 Shewanella amazonensis SB2B 4603178 YP_926804.1 CDS ispH NC_008700.1 1120174 1121115 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1120174..1121115 Shewanella amazonensis SB2B 4603179 YP_926805.1 CDS Sama_0928 NC_008700.1 1121344 1121862 D KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus assembly protein PilV 1121344..1121862 Shewanella amazonensis SB2B 4603180 YP_926806.1 CDS Sama_0929 NC_008700.1 1121868 1122842 D KEGG: son:SO3527 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 1121868..1122842 Shewanella amazonensis SB2B 4603181 YP_926807.1 CDS Sama_0930 NC_008700.1 1122855 1123325 D KEGG: shm:Shewmr7_3033 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1122855..1123325 Shewanella amazonensis SB2B 4603182 YP_926808.1 CDS Sama_0931 NC_008700.1 1123322 1126927 D KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1123322..1126927 Shewanella amazonensis SB2B 4603183 YP_926809.1 CDS Sama_0932 NC_008700.1 1126945 1127343 D KEGG: son:SO3524 type IV pilus biogenesis protein PilE; type IV pilus biogenesis protein PilE 1126945..1127343 Shewanella amazonensis SB2B 4603184 YP_926810.1 CDS Sama_0933 NC_008700.1 1127703 1128194 R KEGG: she:Shewmr4_2947 methylation site containing protein; methylation site containing protein complement(1127703..1128194) Shewanella amazonensis SB2B 4603185 YP_926811.1 CDS Sama_0934 NC_008700.1 1128312 1128824 R KEGG: son:SO3520 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein complement(1128312..1128824) Shewanella amazonensis SB2B 4603186 YP_926812.1 CDS Sama_0935 NC_008700.1 1129044 1129382 D KEGG: sdn:Sden_2711 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1129044..1129382 Shewanella amazonensis SB2B 4603187 YP_926813.1 CDS Sama_0936 NC_008700.1 1129602 1130891 D KEGG: son:SO3517 NADH dehydrogenase; NADH dehydrogenase 1129602..1130891 Shewanella amazonensis SB2B 4603188 YP_926814.1 CDS Sama_0937 NC_008700.1 1130902 1131915 R KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1130902..1131915) Shewanella amazonensis SB2B 4603189 YP_926815.1 CDS Sama_0938 NC_008700.1 1132332 1134977 D KEGG: sdn:Sden_2708 TonB-dependent receptor; TonB-dependent receptor 1132332..1134977 Shewanella amazonensis SB2B 4603190 YP_926816.1 CDS Sama_0939 NC_008700.1 1135041 1136564 D KEGG: sdn:Sden_2707 tryptophan halogenase; tryptophan halogenase 1135041..1136564 Shewanella amazonensis SB2B 4603191 YP_926817.1 CDS Sama_0940 NC_008700.1 1136632 1137324 R KEGG: son:SO3512 hypothetical protein; hypothetical protein complement(1136632..1137324) Shewanella amazonensis SB2B 4603192 YP_926818.1 CDS Sama_0941 NC_008700.1 1138366 1139229 D KEGG: sde:Sde_2658 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1138366..1139229 Shewanella amazonensis SB2B 4603193 YP_926819.1 CDS Sama_0942 NC_008700.1 1139226 1140713 D KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 1139226..1140713 Shewanella amazonensis SB2B 4603194 YP_926820.1 CDS Sama_0943 NC_008700.1 1140745 1143399 D KEGG: son:SO3509 beta-hexosaminidase b precursor; beta-N-acetylhexosaminidase 1140745..1143399 Shewanella amazonensis SB2B 4603195 YP_926821.1 CDS Sama_0944 NC_008700.1 1143619 1144524 D KEGG: son:SO3507 hypothetical protein; hypothetical protein 1143619..1144524 Shewanella amazonensis SB2B 4603196 YP_926822.1 CDS Sama_0945 NC_008700.1 1144569 1145567 D KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine--fructose-6-phosphate transaminase (isomerizing) 1144569..1145567 Shewanella amazonensis SB2B 4603197 YP_926823.1 CDS Sama_0946 NC_008700.1 1145587 1146720 D KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1145587..1146720 Shewanella amazonensis SB2B 4603198 YP_926824.1 CDS Sama_0947 NC_008700.1 1146829 1147965 D KEGG: son:SO3504 hypothetical protein; hypothetical protein 1146829..1147965 Shewanella amazonensis SB2B 4603199 YP_926825.1 CDS Sama_0948 NC_008700.1 1148200 1149525 D KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1148200..1149525 Shewanella amazonensis SB2B 4603200 YP_926826.1 CDS Sama_0949 NC_008700.1 1150227 1150772 D KEGG: csa:Csal_1313 cytochrome b561; cytochrome b561 1150227..1150772 Shewanella amazonensis SB2B 4605935 YP_926827.1 CDS Sama_0950 NC_008700.1 1150775 1151347 D KEGG: son:SO3370 hypothetical protein; hypothetical protein 1150775..1151347 Shewanella amazonensis SB2B 4603202 YP_926828.1 CDS Sama_0951 NC_008700.1 1151517 1151993 D KEGG: son:SO1191 transcription elongation factor GreA; GreA/GreB family elongation factor 1151517..1151993 Shewanella amazonensis SB2B 4603203 YP_926829.1 CDS Sama_0952 NC_008700.1 1152075 1152374 R KEGG: son:SO1195 putative RNA-binding protein containing KH domain; RNA-binding protein complement(1152075..1152374) Shewanella amazonensis SB2B 4603204 YP_926830.1 CDS rrmJ NC_008700.1 1152464 1153093 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1152464..1153093 Shewanella amazonensis SB2B 4603205 YP_926831.1 CDS Sama_0954 NC_008700.1 1153139 1155091 D KEGG: son:SO1197 cell division protein FtsH; vesicle-fusing ATPase 1153139..1155091 Shewanella amazonensis SB2B 4603206 YP_926832.1 CDS Sama_0955 NC_008700.1 1155159 1155998 D KEGG: son:SO1198 dihydropteroate synthase; dihydropteroate synthase 1155159..1155998 Shewanella amazonensis SB2B 4603207 YP_926833.1 CDS glmM NC_008700.1 1156061 1157398 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1156061..1157398 Shewanella amazonensis SB2B 4603208 YP_926834.1 CDS Sama_0957 NC_008700.1 1157568 1158350 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1157568..1158350 Shewanella amazonensis SB2B 4603209 YP_926835.1 CDS secG NC_008700.1 1158352 1158678 D KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1158352..1158678 Shewanella amazonensis SB2B 4603210 YP_926836.1 CDS Sama_0959 NC_008700.1 1159104 1159559 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1159104..1159559 Shewanella amazonensis SB2B 4605937 YP_926837.1 CDS nusA NC_008700.1 1159587 1161086 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1159587..1161086 Shewanella amazonensis SB2B 4603212 YP_926838.1 CDS infB NC_008700.1 1161111 1163759 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1161111..1163759 Shewanella amazonensis SB2B 4603213 YP_926839.1 CDS rbfA NC_008700.1 1163813 1164226 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1163813..1164226 Shewanella amazonensis SB2B 4603214 YP_926840.1 CDS truB NC_008700.1 1164226 1165173 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1164226..1165173 Shewanella amazonensis SB2B 4603215 YP_926841.1 CDS rpsO NC_008700.1 1165272 1165541 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1165272..1165541 Shewanella amazonensis SB2B 4605938 YP_926842.1 CDS Sama_0965 NC_008700.1 1165609 1167651 R KEGG: son:SO1208 GGDEF domain protein protein; diguanylate cyclase complement(1165609..1167651) Shewanella amazonensis SB2B 4603217 YP_926843.1 CDS Sama_0966 NC_008700.1 1167839 1169938 D KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase/polyadenylase 1167839..1169938 Shewanella amazonensis SB2B 4603218 YP_926844.1 CDS Sama_0967 NC_008700.1 1170119 1171024 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1170119..1171024 Shewanella amazonensis SB2B 4603219 YP_926845.1 CDS prfC NC_008700.1 1171131 1172717 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1171131..1172717 Shewanella amazonensis SB2B 4603220 YP_926846.1 CDS Sama_0969 NC_008700.1 1172778 1173008 D hypothetical protein 1172778..1173008 Shewanella amazonensis SB2B 4603221 YP_926847.1 CDS Sama_0970 NC_008700.1 1173084 1173866 D KEGG: sdn:Sden_1022 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 1173084..1173866 Shewanella amazonensis SB2B 4603222 YP_926848.1 CDS Sama_0971 NC_008700.1 1174043 1175302 D KEGG: sdn:Sden_1023 nucleoside transporter; nucleoside transporter 1174043..1175302 Shewanella amazonensis SB2B 4603223 YP_926849.1 CDS Sama_0972 NC_008700.1 1175591 1176400 D KEGG: vfi:VF0719 putative sugar hydrolase; hypothetical protein 1175591..1176400 Shewanella amazonensis SB2B 4603224 YP_926850.1 CDS Sama_0973 NC_008700.1 1176746 1177519 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1176746..1177519 Shewanella amazonensis SB2B 4603225 YP_926851.1 CDS deoA NC_008700.1 1177666 1178997 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1177666..1178997 Shewanella amazonensis SB2B 4603226 YP_926852.1 CDS Sama_0975 NC_008700.1 1179009 1180232 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1179009..1180232 Shewanella amazonensis SB2B 4603227 YP_926853.1 CDS deoD NC_008700.1 1180325 1181035 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1180325..1181035 Shewanella amazonensis SB2B 4603228 YP_926854.1 CDS Sama_0977 NC_008700.1 1181164 1181988 R KEGG: son:SO1222 membrane protein; membrane protein complement(1181164..1181988) Shewanella amazonensis SB2B 4603229 YP_926855.1 CDS Sama_0978 NC_008700.1 1182031 1182981 D KEGG: son:SO1223 phosphoserine phosphatase; phosphoserine phosphatase 1182031..1182981 Shewanella amazonensis SB2B 4603230 YP_926856.1 CDS Sama_0979 NC_008700.1 1183073 1184050 D KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1183073..1184050 Shewanella amazonensis SB2B 4603231 YP_926857.1 CDS Sama_0980 NC_008700.1 1184060 1186438 R KEGG: son:SO1225 hypothetical protein; hypothetical protein complement(1184060..1186438) Shewanella amazonensis SB2B 4603232 YP_926858.1 CDS Sama_0981 NC_008700.1 1186543 1187907 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1186543..1187907 Shewanella amazonensis SB2B 4603233 YP_926859.1 CDS Sama_0982 NC_008700.1 1187940 1188311 R KEGG: son:SO1227 hypothetical protein; hypothetical protein complement(1187940..1188311) Shewanella amazonensis SB2B 4603234 YP_926860.1 CDS Sama_0983 NC_008700.1 1188516 1189226 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1188516..1189226 Shewanella amazonensis SB2B 4603235 YP_926861.1 CDS Sama_0984 NC_008700.1 1189216 1190253 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(1189216..1190253) Shewanella amazonensis SB2B 4603236 YP_926862.1 CDS Sama_0985 NC_008700.1 1190309 1193230 D KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; sensor histidine kinase/response regulator TorS 1190309..1193230 Shewanella amazonensis SB2B 4603237 YP_926863.1 CDS torD NC_008700.1 1193315 1194022 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(1193315..1194022) Shewanella amazonensis SB2B 4603238 YP_926864.1 CDS Sama_0987 NC_008700.1 1194019 1196508 R KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase complement(1194019..1196508) Shewanella amazonensis SB2B 4603239 YP_926865.1 CDS Sama_0988 NC_008700.1 1196523 1197698 R KEGG: son:SO1233 tetraheme cytochrome c; tetraheme cytochrome c complement(1196523..1197698) Shewanella amazonensis SB2B 4603240 YP_926866.1 CDS Sama_0989 NC_008700.1 1197717 1197881 R KEGG: son:SO1234 warning TorE protein; warning TorE protein complement(1197717..1197881) Shewanella amazonensis SB2B 4603241 YP_926867.1 CDS Sama_0990 NC_008700.1 1197993 1198415 R KEGG: son:SO1237 acetoin utilization protein AcuB, putative; acetoin utilization protein AcuB complement(1197993..1198415) Shewanella amazonensis SB2B 4603242 YP_926868.1 CDS Sama_0991 NC_008700.1 1198452 1200212 R KEGG: son:SO1238 acyltransferase family protein; acyltransferase family protein complement(1198452..1200212) Shewanella amazonensis SB2B 4603243 YP_926869.1 CDS Sama_0992 NC_008700.1 1200226 1201074 R KEGG: son:SO1239 hypothetical protein; hypothetical protein complement(1200226..1201074) Shewanella amazonensis SB2B 4603244 YP_926870.1 CDS Sama_0993 NC_008700.1 1201160 1204912 R KEGG: cps:CPS_2607 GGDEF domain protein protein; ligand-binding sensor domain-containing protein complement(1201160..1204912) Shewanella amazonensis SB2B 4603245 YP_926871.1 CDS Sama_0994 NC_008700.1 1205023 1206381 R KEGG: son:SO1245 hypothetical protein; hypothetical protein complement(1205023..1206381) Shewanella amazonensis SB2B 4603246 YP_926872.1 CDS Sama_0995 NC_008700.1 1206764 1208317 R KEGG: son:SO1385 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(1206764..1208317) Shewanella amazonensis SB2B 4603247 YP_926873.1 CDS Sama_0996 NC_008700.1 1208635 1209339 D KEGG: son:SO1247 hypothetical protein; hypothetical protein 1208635..1209339 Shewanella amazonensis SB2B 4603248 YP_926874.1 CDS Sama_0997 NC_008700.1 1209323 1210159 R KEGG: sdn:Sden_1038 peptidase U32; peptidase U32 complement(1209323..1210159) Shewanella amazonensis SB2B 4603249 YP_926875.1 CDS Sama_0998 NC_008700.1 1210171 1211172 R KEGG: son:SO1249 peptidase, U32 family; U32 family peptidase complement(1210171..1211172) Shewanella amazonensis SB2B 4603250 YP_926876.1 CDS Sama_0999 NC_008700.1 1211316 1211828 D KEGG: son:SO1250 hypothetical protein; hypothetical protein 1211316..1211828 Shewanella amazonensis SB2B 4603251 YP_926877.1 CDS Sama_1000 NC_008700.1 1211970 1213034 D KEGG: vvu:VV13195 multidrug resistance efflux pump; multidrug resistance efflux pump 1211970..1213034 Shewanella amazonensis SB2B 4603252 YP_926878.1 CDS Sama_1001 NC_008700.1 1213024 1214100 D KEGG: vvu:VV20703 permease of the major facilitator superfamily; major facilitator superfamily permease 1213024..1214100 Shewanella amazonensis SB2B 4603253 YP_926879.1 CDS Sama_1002 NC_008700.1 1214144 1214395 R KEGG: son:SO1251 ferredoxin, 4Fe-4S; ferredoxin, 4Fe-4S complement(1214144..1214395) Shewanella amazonensis SB2B 4603254 YP_926880.1 CDS Sama_1003 NC_008700.1 1214831 1215073 D hypothetical protein 1214831..1215073 Shewanella amazonensis SB2B 4603255 YP_926881.1 CDS Sama_1004 NC_008700.1 1215224 1216621 R KEGG: son:SO1252 peptidase, U32 family; U32 family peptidase complement(1215224..1216621) Shewanella amazonensis SB2B 4603256 YP_926882.1 CDS Sama_1005 NC_008700.1 1216848 1217690 D KEGG: sdn:Sden_1046 hypothetical protein; putative signal transduction protein 1216848..1217690 Shewanella amazonensis SB2B 4603257 YP_926883.1 CDS Sama_1006 NC_008700.1 1217777 1219261 D KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; cyclic nucleotide phosphodiesterase 1217777..1219261 Shewanella amazonensis SB2B 4603258 YP_926884.1 CDS Sama_1007 NC_008700.1 1219262 1219684 R KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(1219262..1219684) Shewanella amazonensis SB2B 4603259 YP_926885.1 CDS Sama_1008 NC_008700.1 1219712 1220491 R KEGG: sdn:Sden_1052 conserved hypothetical amino acid ABC transporter; amino acid ABC transporter complement(1219712..1220491) Shewanella amazonensis SB2B 4603260 YP_926886.1 CDS Sama_1009 NC_008700.1 1220995 1224441 D KEGG: sdn:Sden_2716 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1220995..1224441 Shewanella amazonensis SB2B 4603261 YP_926887.1 CDS Sama_1010 NC_008700.1 1224431 1224763 D hypothetical protein 1224431..1224763 Shewanella amazonensis SB2B 4603262 YP_926888.1 CDS Sama_1011 NC_008700.1 1224820 1225566 R KEGG: son:SO3481 hypothetical protein; hypothetical protein complement(1224820..1225566) Shewanella amazonensis SB2B 4603263 YP_926889.1 CDS Sama_1012 NC_008700.1 1225674 1226714 R KEGG: son:SO3480 hypothetical protein phosphatase; hypothetical protein complement(1225674..1226714) Shewanella amazonensis SB2B 4603264 YP_926890.1 CDS Sama_1013 NC_008700.1 1227104 1228771 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1227104..1228771) Shewanella amazonensis SB2B 4603265 YP_926891.1 CDS glyA NC_008700.1 1229015 1230268 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1229015..1230268 Shewanella amazonensis SB2B 4603266 YP_926892.1 CDS nrdR NC_008700.1 1230372 1230821 D KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1230372..1230821 Shewanella amazonensis SB2B 4603267 YP_926893.1 CDS Sama_1016 NC_008700.1 1230843 1231979 D KEGG: son:SO3469 riboflavin biosynthesis protein RibD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1230843..1231979 Shewanella amazonensis SB2B 4603268 YP_926894.1 CDS Sama_1017 NC_008700.1 1232017 1232670 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1232017..1232670 Shewanella amazonensis SB2B 4603269 YP_926895.1 CDS Sama_1018 NC_008700.1 1232782 1233888 D KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1232782..1233888 Shewanella amazonensis SB2B 4603270 YP_926896.1 CDS ribH NC_008700.1 1234022 1234498 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1234022..1234498 Shewanella amazonensis SB2B 4603271 YP_926897.1 CDS nusB NC_008700.1 1234514 1234918 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1234514..1234918 Shewanella amazonensis SB2B 4603272 YP_926898.1 CDS Sama_1021 NC_008700.1 1234973 1235974 D KEGG: son:SO3464 thiamin-monophosphate kinase; thiamine-phosphate kinase 1234973..1235974 Shewanella amazonensis SB2B 4603273 YP_926899.1 CDS Sama_1022 NC_008700.1 1235974 1236471 D KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1235974..1236471 Shewanella amazonensis SB2B 4603274 YP_926900.1 CDS Sama_1023 NC_008700.1 1236632 1238221 D KEGG: sdn:Sden_2190 protein of unknown function DUF107; membrane-bound serine protease 1236632..1238221 Shewanella amazonensis SB2B 4603275 YP_926901.1 CDS Sama_1024 NC_008700.1 1238214 1238996 D KEGG: cps:CPS_2685 SPFH domain/band 7 family domain protein; hypothetical protein 1238214..1238996 Shewanella amazonensis SB2B 4603276 YP_926902.1 CDS Sama_1025 NC_008700.1 1238998 1240815 R KEGG: sdn:Sden_1376 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate enzyme-like TPP binding region complement(1238998..1240815) Shewanella amazonensis SB2B 4603277 YP_926903.1 CDS Sama_1026 NC_008700.1 1241013 1242677 R KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein complement(1241013..1242677) Shewanella amazonensis SB2B 4603278 YP_926904.1 CDS Sama_1027 NC_008700.1 1242787 1243734 R KEGG: son:SO3461 transporter, putative; transporter complement(1242787..1243734) Shewanella amazonensis SB2B 4603279 YP_926905.1 CDS Sama_1028 NC_008700.1 1243869 1244771 D KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1243869..1244771 Shewanella amazonensis SB2B 4603280 YP_926906.1 CDS Sama_1029 NC_008700.1 1244768 1245010 R KEGG: son:SO3459 hypothetical protein; hypothetical protein complement(1244768..1245010) Shewanella amazonensis SB2B 4603281 YP_926907.1 CDS Sama_1030 NC_008700.1 1245033 1245638 R KEGG: son:SO3458 hypothetical protein; hypothetical protein complement(1245033..1245638) Shewanella amazonensis SB2B 4603282 YP_926908.1 CDS Sama_1031 NC_008700.1 1245628 1248453 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1245628..1248453) Shewanella amazonensis SB2B 4603283 YP_926909.1 CDS rumA NC_008700.1 1248548 1249879 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1248548..1249879 Shewanella amazonensis SB2B 4603284 YP_926910.1 CDS Sama_1033 NC_008700.1 1250012 1252216 D KEGG: son:SO3455 GTP pyrophosphokinase; GTP diphosphokinase 1250012..1252216 Shewanella amazonensis SB2B 4603285 YP_926911.1 CDS mazG NC_008700.1 1252330 1253157 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1252330..1253157 Shewanella amazonensis SB2B 4603286 YP_926912.1 CDS pyrG NC_008700.1 1253255 1254892 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1253255..1254892 Shewanella amazonensis SB2B 4603287 YP_926913.1 CDS eno NC_008700.1 1255111 1256406 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1255111..1256406 Shewanella amazonensis SB2B 4603288 YP_926914.1 CDS Sama_1037 NC_008700.1 1256588 1256905 D KEGG: son:SO3439 cell division protein FtsB; cell division protein FtsB 1256588..1256905 Shewanella amazonensis SB2B 4603289 YP_926915.1 CDS ispD NC_008700.1 1256902 1257618 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1256902..1257618 Shewanella amazonensis SB2B 4603290 YP_926916.1 CDS ispF NC_008700.1 1257628 1258110 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1257628..1258110 Shewanella amazonensis SB2B 4603291 YP_926917.1 CDS Sama_1040 NC_008700.1 1258107 1259189 D KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 1258107..1259189 Shewanella amazonensis SB2B 4603292 YP_926918.1 CDS surE NC_008700.1 1259170 1259916 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1259170..1259916 Shewanella amazonensis SB2B 4603293 YP_926919.1 CDS Sama_1042 NC_008700.1 1259913 1260548 D KEGG: sdn:Sden_1202 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1259913..1260548 Shewanella amazonensis SB2B 4603294 YP_926920.1 CDS Sama_1043 NC_008700.1 1260578 1261468 D KEGG: son:SO3433 lipoprotein NlpD; lipoprotein NlpD 1260578..1261468 Shewanella amazonensis SB2B 4603295 YP_926921.1 CDS Sama_1044 NC_008700.1 1261552 1262535 D KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase sigma-38 factor 1261552..1262535 Shewanella amazonensis SB2B 4603296 YP_926922.1 CDS Sama_1045 NC_008700.1 1262651 1265215 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1262651..1265215) Shewanella amazonensis SB2B 4603297 YP_926923.1 CDS recA NC_008700.1 1265502 1266569 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1265502..1266569 Shewanella amazonensis SB2B 4603298 YP_926924.1 CDS Sama_1047 NC_008700.1 1266581 1267018 D KEGG: son:SO3429 regulatory protein RecX; hypothetical protein 1266581..1267018 Shewanella amazonensis SB2B 4603299 YP_926925.1 CDS alaS NC_008700.1 1267153 1269855 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1267153..1269855 Shewanella amazonensis SB2B 4603300 YP_926926.1 CDS Sama_1049 NC_008700.1 1269889 1271100 D KEGG: son:SO3427 aspartokinase; aspartate kinase 1269889..1271100 Shewanella amazonensis SB2B 4603301 YP_926927.1 CDS Sama_1050 NC_008700.1 1271214 1271408 D KEGG: son:SO3426 carbon storage regulator; carbon storage regulator 1271214..1271408 Shewanella amazonensis SB2B 4603302 YP_926928.1 CDS Sama_1051 NC_008700.1 1272910 1273167 D KEGG: cps:CPS_1048 oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 1272910..1273167 Shewanella amazonensis SB2B 4605946 YP_926929.1 CDS Sama_1052 NC_008700.1 1273164 1274963 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1273164..1274963 Shewanella amazonensis SB2B 4603304 YP_926930.1 CDS Sama_1053 NC_008700.1 1274973 1276103 D KEGG: vpa:VP2543 oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase 1274973..1276103 Shewanella amazonensis SB2B 4603305 YP_926931.1 CDS Sama_1054 NC_008700.1 1276155 1276328 R KEGG: pat:Patl_3131 membrane protein; membrane protein complement(1276155..1276328) Shewanella amazonensis SB2B 4603306 YP_926932.1 CDS Sama_1055 NC_008700.1 1276475 1277728 R KEGG: sdn:Sden_1216 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1276475..1277728) Shewanella amazonensis SB2B 4603307 YP_926933.1 CDS Sama_1056 NC_008700.1 1277977 1278393 D KEGG: son:SO3561 hypothetical protein; hypothetical protein 1277977..1278393 Shewanella amazonensis SB2B 4603308 YP_926934.1 CDS Sama_1057 NC_008700.1 1278505 1281342 D KEGG: son:SO3560 peptidase, M16 family; M16 family peptidase 1278505..1281342 Shewanella amazonensis SB2B 4603309 YP_926935.1 CDS Sama_1058 NC_008700.1 1281529 1283109 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1281529..1283109 Shewanella amazonensis SB2B 4603310 YP_926936.1 CDS Sama_1059 NC_008700.1 1283094 1283510 D KEGG: son:SO3558 hypothetical protein; hypothetical protein 1283094..1283510 Shewanella amazonensis SB2B 4603311 YP_926937.1 CDS Sama_1060 NC_008700.1 1283617 1284228 D KEGG: son:SO3557 hypothetical protein; hypothetical protein 1283617..1284228 Shewanella amazonensis SB2B 4603312 YP_926938.1 CDS Sama_1061 NC_008700.1 1284363 1286669 R KEGG: son:SO1002 hypothetical protein; hypothetical protein complement(1284363..1286669) Shewanella amazonensis SB2B 4603313 YP_926939.1 CDS Sama_1062 NC_008700.1 1286707 1288023 R KEGG: sdn:Sden_1222 GGDEF domain protein; diguanylate cyclase complement(1286707..1288023) Shewanella amazonensis SB2B 4603314 YP_926940.1 CDS Sama_1063 NC_008700.1 1288065 1289150 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1288065..1289150) Shewanella amazonensis SB2B 4603315 YP_926941.1 CDS Sama_1064 NC_008700.1 1289153 1289644 R KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylaminoimidazole carboxylase complement(1289153..1289644) Shewanella amazonensis SB2B 4603316 YP_926942.1 CDS Sama_1065 NC_008700.1 1289796 1290938 R KEGG: rso:RSc0932 putative membrane-bound dehydrogenase oxidoreductase protein; putative membrane-bound dehydrogenase oxidoreductase protein complement(1289796..1290938) Shewanella amazonensis SB2B 4603317 YP_926943.1 CDS Sama_1066 NC_008700.1 1291055 1292437 R KEGG: vvy:VV3101 hypothetical protein; hypothetical protein complement(1291055..1292437) Shewanella amazonensis SB2B 4603318 YP_926944.1 CDS Sama_1067 NC_008700.1 1292550 1294268 R putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM complement(1292550..1294268) Shewanella amazonensis SB2B 4603319 YP_926945.1 CDS Sama_1068 NC_008700.1 1294521 1295117 D KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1294521..1295117 Shewanella amazonensis SB2B 4603320 YP_926946.1 CDS Sama_1069 NC_008700.1 1295107 1295865 D KEGG: son:SO3550 hypothetical protein; hypothetical protein 1295107..1295865 Shewanella amazonensis SB2B 4603321 YP_926947.1 CDS Sama_1070 NC_008700.1 1295905 1296750 D KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1295905..1296750 Shewanella amazonensis SB2B 4603322 YP_926948.1 CDS Sama_1071 NC_008700.1 1296772 1297956 R KEGG: son:SO1387 HD domain protein; response regulator receiver protein complement(1296772..1297956) Shewanella amazonensis SB2B 4603323 YP_926949.2 CDS rdgC NC_008700.1 1298478 1299389 R Required for efficient pilin antigenic variation; recombination associated protein complement(1298478..1299389) Shewanella amazonensis SB2B 4603324 YP_926950.1 CDS Sama_1073 NC_008700.1 1299682 1300608 D KEGG: sdn:Sden_2690 porin, gram-negative type; porin 1299682..1300608 Shewanella amazonensis SB2B 4603325 YP_926951.1 CDS Sama_1074 NC_008700.1 1300792 1301481 D KEGG: son:SO1558 phosphate regulon response regulator PhoB; response regulator receiver protein 1300792..1301481 Shewanella amazonensis SB2B 4603326 YP_926952.1 CDS Sama_1075 NC_008700.1 1301553 1302857 D KEGG: son:SO1559 phosphate regulon sensor protein PhoR; phosphate regulon sensor protein PhoR 1301553..1302857 Shewanella amazonensis SB2B 4603327 YP_926953.1 CDS Sama_1076 NC_008700.1 1303044 1304015 D KEGG: son:SO1560 phosphate-binding protein; phosphate-binding protein 1303044..1304015 Shewanella amazonensis SB2B 4603328 YP_926954.1 CDS Sama_1077 NC_008700.1 1304198 1305103 R KEGG: cps:CPS_1458 microbial collagenase; collagenase complement(1304198..1305103) Shewanella amazonensis SB2B 4603329 YP_926955.1 CDS Sama_1078 NC_008700.1 1305235 1307031 D KEGG: son:SO1561 peptidase, M1 family; M1 family peptidase 1305235..1307031 Shewanella amazonensis SB2B 4603330 YP_926956.1 CDS Sama_1079 NC_008700.1 1307198 1307464 D hypothetical protein 1307198..1307464 Shewanella amazonensis SB2B 4603331 YP_926957.1 CDS Sama_1080 NC_008700.1 1307678 1308172 R KEGG: bce:BC2114 glutathione peroxidase; glutathione peroxidase complement(1307678..1308172) Shewanella amazonensis SB2B 4603332 YP_926958.1 CDS Sama_1081 NC_008700.1 1308334 1309698 D KEGG: son:SO1565 magnesium transporter, putative; magnesium transporter 1308334..1309698 Shewanella amazonensis SB2B 4603333 YP_926959.1 CDS Sama_1082 NC_008700.1 1309695 1310219 D KEGG: son:SO1566 acetyltransferase, GNAT family; acetyltransferase 1309695..1310219 Shewanella amazonensis SB2B 4603334 YP_926960.1 CDS Sama_1083 NC_008700.1 1310191 1311063 R KEGG: son:SO1569 integral membrane domain protein; integral membrane domain-containing protein complement(1310191..1311063) Shewanella amazonensis SB2B 4603335 YP_926961.1 CDS Sama_1084 NC_008700.1 1311233 1312921 D KEGG: son:SO1570 GGDEF domain protein protein; diguanylate cyclase 1311233..1312921 Shewanella amazonensis SB2B 4603336 YP_926962.1 CDS Sama_1085 NC_008700.1 1313171 1313332 R KEGG: son:SO1572 hypothetical protein; hypothetical protein complement(1313171..1313332) Shewanella amazonensis SB2B 4603337 YP_926963.1 CDS Sama_1086 NC_008700.1 1313537 1314901 R KEGG: sdn:Sden_2643 Fmu (Sun); hypothetical protein complement(1313537..1314901) Shewanella amazonensis SB2B 4603338 YP_926964.1 CDS Sama_1087 NC_008700.1 1314986 1315654 R KEGG: son:SO1576 glutathione S-transferase family protein; glutathione S-transferase family protein complement(1314986..1315654) Shewanella amazonensis SB2B 4603339 YP_926965.1 CDS Sama_1088 NC_008700.1 1315666 1316295 R KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase family protein complement(1315666..1316295) Shewanella amazonensis SB2B 4603340 YP_926966.1 CDS Sama_1089 NC_008700.1 1316410 1316982 D KEGG: son:SO1578 transcriptional regulator, TetR family; TetR family transcriptional regulator 1316410..1316982 Shewanella amazonensis SB2B 4603341 YP_926967.1 CDS Sama_1090 NC_008700.1 1317002 1317673 R KEGG: sdn:Sden_2642 hypothetical protein; hypothetical protein complement(1317002..1317673) Shewanella amazonensis SB2B 4603342 YP_926968.1 CDS Sama_1091 NC_008700.1 1317774 1318340 D KEGG: son:SO1581 PhnA protein; PhnA protein 1317774..1318340 Shewanella amazonensis SB2B 4603343 YP_926969.1 CDS Sama_1092 NC_008700.1 1318543 1319559 D KEGG: son:SO1583 hypothetical protein; hypothetical protein 1318543..1319559 Shewanella amazonensis SB2B 4603344 YP_926970.1 CDS Sama_1093 NC_008700.1 1319569 1320177 D KEGG: sdn:Sden_2637 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1319569..1320177 Shewanella amazonensis SB2B 4603345 YP_926971.1 CDS Sama_1094 NC_008700.1 1320269 1321003 D KEGG: dvu:DVUA0150 bacterial extracellular solute-binding protein, family 3; hypothetical protein 1320269..1321003 Shewanella amazonensis SB2B 4603346 YP_926972.1 CDS Sama_1095 NC_008700.1 1321011 1321538 R KEGG: vfi:VF0983 hypothetical protein; hypothetical protein complement(1321011..1321538) Shewanella amazonensis SB2B 4603347 YP_926973.1 CDS Sama_1096 NC_008700.1 1321785 1322393 D KEGG: son:SO1589 hypothetical protein; hypothetical protein 1321785..1322393 Shewanella amazonensis SB2B 4603348 YP_926974.1 CDS Sama_1097 NC_008700.1 1322396 1322707 R KEGG: son:SO1588 hypothetical protein; hypothetical protein complement(1322396..1322707) Shewanella amazonensis SB2B 4603349 YP_926975.1 CDS Sama_1098 NC_008700.1 1322789 1323499 D hypothetical protein 1322789..1323499 Shewanella amazonensis SB2B 4603350 YP_926976.1 CDS Sama_1099 NC_008700.1 1323593 1324483 D KEGG: vvy:VVA1444 hypothetical protein; hypothetical protein 1323593..1324483 Shewanella amazonensis SB2B 4603351 YP_926977.1 CDS Sama_1100 NC_008700.1 1324483 1324902 D KEGG: son:SO3831 acetyltransferase, GNAT family; acetyltransferase 1324483..1324902 Shewanella amazonensis SB2B 4603352 YP_926978.1 CDS Sama_1101 NC_008700.1 1324974 1326563 D KEGG: son:SO2198 hypothetical aminopeptidase; aminopeptidase 1324974..1326563 Shewanella amazonensis SB2B 4603353 YP_926979.1 CDS Sama_1102 NC_008700.1 1326641 1335187 R KEGG: cps:CPS_2152 thrombospondin type 3 repeat family protein/Calx-beta domain protein; ATPase complement(1326641..1335187) Shewanella amazonensis SB2B 4603354 YP_926980.1 CDS Sama_1103 NC_008700.1 1335418 1336854 R KEGG: xcv:XCV0335 two-component system sensor protein; signal transduction histidine kinase-like protein complement(1335418..1336854) Shewanella amazonensis SB2B 4603355 YP_926981.1 CDS Sama_1104 NC_008700.1 1337018 1337686 R KEGG: hch:HCH_00064 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator receiver protein complement(1337018..1337686) Shewanella amazonensis SB2B 4603356 YP_926982.1 CDS Sama_1105 NC_008700.1 1337715 1341140 R KEGG: sde:Sde_0667 response regulator receiver domain protein (CheY-like); signal transduction histidine kinase-like protein complement(1337715..1341140) Shewanella amazonensis SB2B 4603357 YP_926983.1 CDS Sama_1106 NC_008700.1 1341377 1341832 R KEGG: vvy:VVA1430 histone acetyltransferase HPA2; histone acetyltransferase HPA2 complement(1341377..1341832) Shewanella amazonensis SB2B 4603358 YP_926984.1 CDS Sama_1107 NC_008700.1 1342217 1342816 D KEGG: vvy:VVA1671 fructose-2;6-bisphosphatase; fructose-2;6-bisphosphatase 1342217..1342816 Shewanella amazonensis SB2B 4603359 YP_926985.1 CDS Sama_1108 NC_008700.1 1342969 1344999 R KEGG: pha:PSHAa2848 alpha-glucosidase; alpha-glucosidase complement(1342969..1344999) Shewanella amazonensis SB2B 4603360 YP_926986.1 CDS Sama_1109 NC_008700.1 1345491 1345823 D KEGG: ilo:IL1490 hypothetical protein; hypothetical protein 1345491..1345823 Shewanella amazonensis SB2B 4603361 YP_926987.1 CDS Sama_1110 NC_008700.1 1345977 1346348 R hypothetical protein complement(1345977..1346348) Shewanella amazonensis SB2B 4603362 YP_926988.1 CDS Sama_1111 NC_008700.1 1347037 1348848 D KEGG: tko:TK1395 predicted ATP-dependent endonuclease, OLD family; ATP-dependent OLD family endonuclease 1347037..1348848 Shewanella amazonensis SB2B 4603363 YP_926989.1 CDS Sama_1112 NC_008700.1 1349680 1351293 R KEGG: ppr:PBPRA1457 omega-3 polyunsaturated fatty acid synthase PfaD; omega-3 polyunsaturated fatty acid synthase PfaD complement(1349680..1351293) Shewanella amazonensis SB2B 4603364 YP_926990.1 CDS Sama_1113 NC_008700.1 1351378 1357077 R KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; omega-3 polyunsaturated fatty acid synthase PfaC complement(1351378..1357077) Shewanella amazonensis SB2B 4603365 YP_926991.1 CDS Sama_1114 NC_008700.1 1357155 1359218 R KEGG: sdn:Sden_2628 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB complement(1357155..1359218) Shewanella amazonensis SB2B 4603366 YP_926992.1 CDS Sama_1115 NC_008700.1 1359215 1366843 R KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; erythronolide synthase complement(1359215..1366843) Shewanella amazonensis SB2B 4603367 YP_926993.1 CDS Sama_1116 NC_008700.1 1366840 1367658 R KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator complement(1366840..1367658) Shewanella amazonensis SB2B 4603368 YP_926994.1 CDS Sama_1117 NC_008700.1 1367949 1368308 D hypothetical protein 1367949..1368308 Shewanella amazonensis SB2B 4603369 YP_926995.1 CDS Sama_1118 NC_008700.1 1368423 1370471 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1368423..1370471 Shewanella amazonensis SB2B 4603370 YP_926996.1 CDS Sama_1119 NC_008700.1 1370733 1371587 D KEGG: sdn:Sden_2625 4'-phosphopantetheinyl transferase; phosphopantetheinyl transferase-like protein 1370733..1371587 Shewanella amazonensis SB2B 4603371 YP_926997.1 CDS queF NC_008700.1 1371697 1372587 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1371697..1372587) Shewanella amazonensis SB2B 4603372 YP_926998.1 CDS Sama_1121 NC_008700.1 1372614 1373261 D putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1372614..1373261 Shewanella amazonensis SB2B 4603373 YP_926999.1 CDS Sama_1122 NC_008700.1 1373362 1374135 R KEGG: sdn:Sden_1515 hypothetical protein; hypothetical protein complement(1373362..1374135) Shewanella amazonensis SB2B 4603374 YP_927000.1 CDS Sama_1123 NC_008700.1 1374135 1374443 R KEGG: son:SO1611 hypothetical protein; hypothetical protein complement(1374135..1374443) Shewanella amazonensis SB2B 4603375 YP_927001.1 CDS Sama_1124 NC_008700.1 1374588 1374944 D KEGG: son:SO1612 hypothetical protein; hypothetical protein 1374588..1374944 Shewanella amazonensis SB2B 4603376 YP_927002.1 CDS Sama_1125 NC_008700.1 1374946 1375176 R KEGG: son:SO1613 hypothetical protein; hypothetical protein complement(1374946..1375176) Shewanella amazonensis SB2B 4603377 YP_927003.1 CDS Sama_1126 NC_008700.1 1375311 1375952 D KEGG: son:SO1614 acetyltransferase, GNAT family; acetyltransferase 1375311..1375952 Shewanella amazonensis SB2B 4603378 YP_927004.1 CDS Sama_1127 NC_008700.1 1375942 1376256 D KEGG: pae:PA3216 hypothetical protein; hypothetical protein 1375942..1376256 Shewanella amazonensis SB2B 4603379 YP_927005.1 CDS Sama_1128 NC_008700.1 1378196 1378585 R KEGG: son:SO1617 hypothetical protein; hypothetical protein complement(1378196..1378585) Shewanella amazonensis SB2B 4603380 YP_927006.1 CDS Sama_1129 NC_008700.1 1378582 1379595 R KEGG: son:SO1618 hypothetical protein; hypothetical protein complement(1378582..1379595) Shewanella amazonensis SB2B 4603381 YP_927007.1 CDS Sama_1130 NC_008700.1 1379627 1380034 D KEGG: sdn:Sden_1545 protein of unknown function DUF446; hypothetical protein 1379627..1380034 Shewanella amazonensis SB2B 4603382 YP_927008.1 CDS Sama_1131 NC_008700.1 1380060 1380836 D KEGG: shm:Shewmr7_2717 pseudouridylate synthase; pseudouridylate synthase 1380060..1380836 Shewanella amazonensis SB2B 4603383 YP_927009.1 CDS Sama_1132 NC_008700.1 1381214 1381678 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1381214..1381678 Shewanella amazonensis SB2B 4603384 YP_927010.1 CDS Sama_1133 NC_008700.1 1381642 1383099 D KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system glucose-specific transporter subunit IIBC 1381642..1383099 Shewanella amazonensis SB2B 4603385 YP_927011.1 CDS purU NC_008700.1 1383259 1384104 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1383259..1384104 Shewanella amazonensis SB2B 4603386 YP_927012.1 CDS Sama_1135 NC_008700.1 1384145 1384492 R KEGG: sdn:Sden_1550 hypothetical protein; hypothetical protein complement(1384145..1384492) Shewanella amazonensis SB2B 4603387 YP_927013.1 CDS dapD NC_008700.1 1384757 1385581 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1384757..1385581) Shewanella amazonensis SB2B 4603388 YP_927014.1 CDS Sama_1137 NC_008700.1 1385608 1388178 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1385608..1388178) Shewanella amazonensis SB2B 4603389 YP_927015.1 CDS Sama_1138 NC_008700.1 1388187 1388987 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1388187..1388987) Shewanella amazonensis SB2B 4603390 YP_927016.1 CDS rpsB NC_008700.1 1389252 1390028 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1389252..1390028 Shewanella amazonensis SB2B 4603391 YP_927017.1 CDS tsf NC_008700.1 1390156 1391007 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1390156..1391007 Shewanella amazonensis SB2B 4603392 YP_927018.1 CDS pyrH NC_008700.1 1391076 1391801 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1391076..1391801 Shewanella amazonensis SB2B 4603393 YP_927019.1 CDS frr NC_008700.1 1391845 1392402 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1391845..1392402 Shewanella amazonensis SB2B 4603394 YP_927020.1 CDS Sama_1143 NC_008700.1 1392485 1393285 D KEGG: son:SO1633 undecaprenyl diphosphate synthase; di-trans,poly-cis-decaprenylcistransferase 1392485..1393285 Shewanella amazonensis SB2B 4603395 YP_927021.1 CDS Sama_1144 NC_008700.1 1393310 1394167 D KEGG: sdn:Sden_1559 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1393310..1394167 Shewanella amazonensis SB2B 4603396 YP_927022.1 CDS Sama_1145 NC_008700.1 1394170 1395357 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1394170..1395357 Shewanella amazonensis SB2B 4603397 YP_927023.1 CDS Sama_1146 NC_008700.1 1395382 1396752 D KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; membrane-associated zinc metalloprotease 1395382..1396752 Shewanella amazonensis SB2B 4603398 YP_927024.1 CDS Sama_1147 NC_008700.1 1396733 1399267 D KEGG: son:SO1637 bacterial surface antigen; surface antigen 1396733..1399267 Shewanella amazonensis SB2B 4603399 YP_927025.1 CDS Sama_1148 NC_008700.1 1399321 1399827 D KEGG: son:SO1638 outer membrane protein OmpH; outer membrane protein OmpH 1399321..1399827 Shewanella amazonensis SB2B 4603400 YP_927026.1 CDS lpxD NC_008700.1 1399831 1400856 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1399831..1400856 Shewanella amazonensis SB2B 4603401 YP_927027.1 CDS fabZ NC_008700.1 1400901 1401362 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1400901..1401362 Shewanella amazonensis SB2B 4603402 YP_927028.1 CDS Sama_1151 NC_008700.1 1401359 1402129 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1401359..1402129 Shewanella amazonensis SB2B 4603403 YP_927029.1 CDS lpxB NC_008700.1 1402156 1403337 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1402156..1403337 Shewanella amazonensis SB2B 4603404 YP_927030.1 CDS rnhB NC_008700.1 1403337 1403957 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1403337..1403957 Shewanella amazonensis SB2B 4603405 YP_927031.1 CDS dnaE NC_008700.1 1404117 1407590 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1404117..1407590 Shewanella amazonensis SB2B 4603406 YP_927032.1 CDS Sama_1155 NC_008700.1 1407601 1409094 D KEGG: son:SO1645 cell cycle protein MesJ; cell cycle protein MesJ 1407601..1409094 Shewanella amazonensis SB2B 4603407 YP_927033.1 CDS Sama_1156 NC_008700.1 1409156 1410265 R KEGG: vvu:VV11783 acetyltransferase; acetyltransferase complement(1409156..1410265) Shewanella amazonensis SB2B 4603408 YP_927034.1 CDS Sama_1157 NC_008700.1 1410321 1411772 D KEGG: vvu:VV11782 glutathione synthase; glutathione synthase 1410321..1411772 Shewanella amazonensis SB2B 4603409 YP_927035.1 CDS Sama_1158 NC_008700.1 1411827 1412738 R KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase complement(1411827..1412738) Shewanella amazonensis SB2B 4603410 YP_927036.1 CDS Sama_1159 NC_008700.1 1412896 1414842 D KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; glutathione-regulated potassium-efflux system protein KefB 1412896..1414842 Shewanella amazonensis SB2B 4603411 YP_927037.1 CDS Sama_1160 NC_008700.1 1414902 1416026 R KEGG: son:SO3155 hypothetical protein; hypothetical protein complement(1414902..1416026) Shewanella amazonensis SB2B 4603412 YP_927038.1 CDS Sama_1161 NC_008700.1 1416155 1417873 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1416155..1417873) Shewanella amazonensis SB2B 4603413 YP_927039.1 CDS Sama_1162 NC_008700.1 1417989 1419302 R KEGG: syn:sll1673 two-component response regulator; diguanylate cyclase complement(1417989..1419302) Shewanella amazonensis SB2B 4603414 YP_927040.1 CDS Sama_1163 NC_008700.1 1419322 1419936 R KEGG: sdn:Sden_2543 acetyltransferase, CysE/LacA/LpxA/NodL family; acetyltransferase complement(1419322..1419936) Shewanella amazonensis SB2B 4603415 YP_927041.1 CDS Sama_1164 NC_008700.1 1419926 1420663 R KEGG: sdn:Sden_2542 protein of unknown function UPF0066; hypothetical protein complement(1419926..1420663) Shewanella amazonensis SB2B 4603416 YP_927042.1 CDS Sama_1165 NC_008700.1 1420667 1421065 R KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein complement(1420667..1421065) Shewanella amazonensis SB2B 4603417 YP_927043.1 CDS Sama_1166 NC_008700.1 1421126 1422385 R KEGG: son:SO3149 hypothetical protein; hypothetical protein complement(1421126..1422385) Shewanella amazonensis SB2B 4603418 YP_927044.1 CDS Sama_1167 NC_008700.1 1422385 1425441 R KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains; amidohydrolase complement(1422385..1425441) Shewanella amazonensis SB2B 4603419 YP_927045.1 CDS Sama_1168 NC_008700.1 1425587 1425979 R KEGG: son:SO3146 DNA-binding protein, H-NS family; H-NS family DNA-binding protein complement(1425587..1425979) Shewanella amazonensis SB2B 4603420 YP_927046.1 CDS Sama_1169 NC_008700.1 1427006 1427755 D KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 1427006..1427755 Shewanella amazonensis SB2B 4603421 YP_927047.1 CDS Sama_1170 NC_008700.1 1427757 1428680 D KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1427757..1428680 Shewanella amazonensis SB2B 4603422 YP_927048.1 CDS Sama_1171 NC_008700.1 1429044 1430606 D KEGG: sdn:Sden_2537 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1429044..1430606 Shewanella amazonensis SB2B 4603423 YP_927049.1 CDS Sama_1172 NC_008700.1 1430689 1432845 R KEGG: son:SO3142 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp complement(1430689..1432845) Shewanella amazonensis SB2B 4603424 YP_927050.1 CDS Sama_1173 NC_008700.1 1432999 1433577 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1432999..1433577 Shewanella amazonensis SB2B 4603425 YP_927051.1 CDS Sama_1174 NC_008700.1 1433642 1435009 R KEGG: pae:PA5522 probable glutamine synthetase; glutamate--ammonia ligase complement(1433642..1435009) Shewanella amazonensis SB2B 4603426 YP_927052.1 CDS Sama_1175 NC_008700.1 1435364 1437340 D KEGG: sdn:Sden_1362 choline/carnitine/betaine transport; choline/carnitine/betaine transport 1435364..1437340 Shewanella amazonensis SB2B 4603427 YP_927053.1 CDS Sama_1176 NC_008700.1 1437410 1437766 D KEGG: son:SO1738 hypothetical protein; hypothetical protein 1437410..1437766 Shewanella amazonensis SB2B 4603428 YP_927054.1 CDS Sama_1177 NC_008700.1 1437930 1439450 D KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein; proton-dependent oligopeptide transporter (POT) family protein 1437930..1439450 Shewanella amazonensis SB2B 4603429 YP_927055.1 CDS Sama_1178 NC_008700.1 1439543 1440259 D KEGG: sdn:Sden_0822 beta-lactamase; beta-lactamase 1439543..1440259 Shewanella amazonensis SB2B 4603430 YP_927056.1 CDS Sama_1179 NC_008700.1 1440275 1440505 R KEGG: son:SO1739 hypothetical protein; hypothetical protein complement(1440275..1440505) Shewanella amazonensis SB2B 4603431 YP_927057.1 CDS Sama_1180 NC_008700.1 1440797 1443505 D KEGG: sdn:Sden_0686 hypothetical protein; hypothetical protein 1440797..1443505 Shewanella amazonensis SB2B 4603432 YP_927058.1 CDS Sama_1181 NC_008700.1 1443797 1445113 D KEGG: son:SO1741 hypothetical protein; hypothetical protein 1443797..1445113 Shewanella amazonensis SB2B 4603433 YP_927059.1 CDS Sama_1182 NC_008700.1 1445417 1446466 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1445417..1446466 Shewanella amazonensis SB2B 4603434 YP_927060.1 CDS Sama_1183 NC_008700.1 1446466 1447398 D KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta fold family hydrolase 1446466..1447398 Shewanella amazonensis SB2B 4603435 YP_927061.1 CDS Sama_1184 NC_008700.1 1447395 1449089 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1447395..1449089 Shewanella amazonensis SB2B 4603436 YP_927062.1 CDS Sama_1185 NC_008700.1 1449086 1450141 D KEGG: ppr:PBPRA1465 steroid dehydrogenase; steroid dehydrogenase 1449086..1450141 Shewanella amazonensis SB2B 4603437 YP_927063.1 CDS Sama_1186 NC_008700.1 1450270 1451466 R KEGG: son:SO4017 transglycosylase, Slt family; Slt family transglycosylase complement(1450270..1451466) Shewanella amazonensis SB2B 4603438 YP_927064.1 CDS Sama_1187 NC_008700.1 1451754 1452635 D KEGG: son:SO1750 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1451754..1452635 Shewanella amazonensis SB2B 4603439 YP_927065.1 CDS Sama_1188 NC_008700.1 1452647 1456207 D KEGG: son:SO1751 hypothetical protein; hypothetical protein 1452647..1456207 Shewanella amazonensis SB2B 4603440 YP_927066.1 CDS Sama_1189 NC_008700.1 1456456 1458213 D KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase family protein 1456456..1458213 Shewanella amazonensis SB2B 4603441 YP_927067.1 CDS Sama_1190 NC_008700.1 1458359 1458742 D KEGG: son:SO1756 glyoxalase family protein; glyoxalase family protein 1458359..1458742 Shewanella amazonensis SB2B 4603442 YP_927068.1 CDS Sama_1191 NC_008700.1 1458845 1459552 D KEGG: son:SO1758 hypothetical protein; hypothetical protein 1458845..1459552 Shewanella amazonensis SB2B 4603443 YP_927069.1 CDS Sama_1192 NC_008700.1 1459602 1462448 R KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor complement(1459602..1462448) Shewanella amazonensis SB2B 4603444 YP_927070.1 CDS Sama_1193 NC_008700.1 1462777 1463559 D KEGG: vfi:VFA1006 transcriptional regulator, GlpR family; GlpR family transcriptional regulator 1462777..1463559 Shewanella amazonensis SB2B 4603445 YP_927071.1 CDS Sama_1194 NC_008700.1 1463578 1464945 D KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; Gfo/Idh/MocA family oxidoreductase 1463578..1464945 Shewanella amazonensis SB2B 4603446 YP_927072.1 CDS Sama_1195 NC_008700.1 1464950 1466218 D KEGG: shm:Shewmr7_2601 tagatose-6-phosphate kinase; tagatose-6-phosphate kinase 1464950..1466218 Shewanella amazonensis SB2B 4603447 YP_927073.1 CDS Sama_1196 NC_008700.1 1466224 1467417 D KEGG: vvy:VVA1515 predicted phosphosugar isomerase; phosphosugar isomerase 1466224..1467417 Shewanella amazonensis SB2B 4603448 YP_927074.1 CDS Sama_1197 NC_008700.1 1467421 1468428 D KEGG: spt:SPA1630 putative ROK-family protein; putative ROK-family protein 1467421..1468428 Shewanella amazonensis SB2B 4603449 YP_927075.1 CDS Sama_1198 NC_008700.1 1468421 1469656 D KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1468421..1469656 Shewanella amazonensis SB2B 4603450 YP_927076.1 CDS Sama_1199 NC_008700.1 1469724 1471040 D KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1469724..1471040 Shewanella amazonensis SB2B 4603451 YP_927077.1 CDS Sama_1200 NC_008700.1 1471185 1472867 R KEGG: sdn:Sden_2434 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase complement(1471185..1472867) Shewanella amazonensis SB2B 4603452 YP_927078.1 CDS Sama_1201 NC_008700.1 1473553 1475010 D KEGG: sdn:Sden_3015 peptidase M4, thermolysin; peptidase M4, thermolysin 1473553..1475010 Shewanella amazonensis SB2B 4603453 YP_927079.1 CDS Sama_1202 NC_008700.1 1475050 1476024 R KEGG: vfi:VF2362 GGDEF family protein; diguanylate cyclase complement(1475050..1476024) Shewanella amazonensis SB2B 4603454 YP_927080.1 CDS Sama_1203 NC_008700.1 1476060 1476653 R KEGG: dar:Daro_1297 hypothetical protein; hypothetical protein complement(1476060..1476653) Shewanella amazonensis SB2B 4603455 YP_927081.1 CDS Sama_1204 NC_008700.1 1476653 1477207 R hypothetical protein complement(1476653..1477207) Shewanella amazonensis SB2B 4603456 YP_927082.1 CDS Sama_1205 NC_008700.1 1477415 1478506 R KEGG: sdn:Sden_2616 peptidyl-Lys metalloendopeptidase; peptidyl-Lys metalloendopeptidase complement(1477415..1478506) Shewanella amazonensis SB2B 4603457 YP_927083.1 CDS Sama_1206 NC_008700.1 1478828 1480909 R KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein MtrB complement(1478828..1480909) Shewanella amazonensis SB2B 4603458 YP_927084.1 CDS Sama_1207 NC_008700.1 1480922 1481902 R KEGG: son:SO1777 decaheme cytochrome c MtrA; decaheme cytochrome c MtrA complement(1480922..1481902) Shewanella amazonensis SB2B 4603459 YP_927085.1 CDS Sama_1208 NC_008700.1 1481971 1483941 R KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c complement(1481971..1483941) Shewanella amazonensis SB2B 4603460 YP_927086.1 CDS Sama_1209 NC_008700.1 1484259 1486448 R KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c complement(1484259..1486448) Shewanella amazonensis SB2B 4603461 YP_927087.1 CDS Sama_1210 NC_008700.1 1486776 1488959 R KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c complement(1486776..1488959) Shewanella amazonensis SB2B 4603462 YP_927088.1 CDS Sama_1211 NC_008700.1 1489054 1490973 R KEGG: son:SO1780 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF complement(1489054..1490973) Shewanella amazonensis SB2B 4603463 YP_927089.1 CDS Sama_1212 NC_008700.1 1491000 1493096 R KEGG: son:SO1781 outer membrane protein, putative; outer membrane protein complement(1491000..1493096) Shewanella amazonensis SB2B 4603464 YP_927090.1 CDS Sama_1213 NC_008700.1 1493107 1494063 R KEGG: son:SO1782 decaheme cytochrome c MtrD; decaheme cytochrome c MtrD complement(1493107..1494063) Shewanella amazonensis SB2B 4603465 YP_927091.1 CDS Sama_1214 NC_008700.1 1494459 1494713 D KEGG: son:SO1783 ferrous iron transport protein A; ferrous iron transport protein A 1494459..1494713 Shewanella amazonensis SB2B 4603466 YP_927092.1 CDS Sama_1215 NC_008700.1 1494706 1497000 D KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 1494706..1497000 Shewanella amazonensis SB2B 4603467 YP_927093.1 CDS Sama_1216 NC_008700.1 1497161 1498828 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1497161..1498828 Shewanella amazonensis SB2B 4603468 YP_927094.1 CDS Sama_1217 NC_008700.1 1498901 1499497 R KEGG: son:SO1787 hypothetical protein; hypothetical protein complement(1498901..1499497) Shewanella amazonensis SB2B 4603469 YP_927095.1 CDS Sama_1218 NC_008700.1 1499678 1500448 D KEGG: son:SO1788 tRNA-hydroxylase; tRNA-hydroxylase 1499678..1500448 Shewanella amazonensis SB2B 4603470 YP_927096.1 CDS Sama_1219 NC_008700.1 1500472 1501188 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1500472..1501188) Shewanella amazonensis SB2B 4603471 YP_927097.1 CDS Sama_1220 NC_008700.1 1501199 1501708 R KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase B complement(1501199..1501708) Shewanella amazonensis SB2B 4603472 YP_927098.1 CDS cysS NC_008700.1 1501835 1503214 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1501835..1503214 Shewanella amazonensis SB2B 4603473 YP_927099.1 CDS Sama_1222 NC_008700.1 1503327 1504181 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1503327..1504181) Shewanella amazonensis SB2B 4603474 YP_927100.1 CDS tig NC_008700.1 1504977 1506281 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1504977..1506281 Shewanella amazonensis SB2B 4605949 YP_927101.1 CDS clpP NC_008700.1 1506371 1506979 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1506371..1506979 Shewanella amazonensis SB2B 4603476 YP_927102.1 CDS clpX NC_008700.1 1507065 1508342 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1507065..1508342 Shewanella amazonensis SB2B 4603477 YP_927103.1 CDS Sama_1226 NC_008700.1 1508471 1510828 D KEGG: son:SO1796 ATP-dependent protease La; endopeptidase La 1508471..1510828 Shewanella amazonensis SB2B 4603478 YP_927104.1 CDS Sama_1227 NC_008700.1 1511088 1511360 D KEGG: son:SO1797 DNA-binding protein, HU family; HU family DNA-binding protein 1511088..1511360 Shewanella amazonensis SB2B 4603479 YP_927105.1 CDS Sama_1228 NC_008700.1 1511561 1513408 D KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; peptidyl-prolyl cis-trans isomerase D 1511561..1513408 Shewanella amazonensis SB2B 4603480 YP_927106.1 CDS Sama_1229 NC_008700.1 1513527 1514183 R KEGG: yps:YPTB2904 putative uracil-DNA glycosylase; putative uracil-DNA glycosylase complement(1513527..1514183) Shewanella amazonensis SB2B 4603481 YP_927107.1 CDS Sama_1230 NC_008700.1 1514278 1515480 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(1514278..1515480) Shewanella amazonensis SB2B 4603482 YP_927108.1 CDS Sama_1231 NC_008700.1 1515577 1516362 R KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; peptide ABC transporter ATP-binding protein complement(1515577..1516362) Shewanella amazonensis SB2B 4603483 YP_927109.1 CDS Sama_1232 NC_008700.1 1516343 1517350 R KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; peptide ABC transporter ATP-binding protein complement(1516343..1517350) Shewanella amazonensis SB2B 4603484 YP_927110.1 CDS Sama_1233 NC_008700.1 1517353 1518243 R KEGG: son:SO1803 peptide ABC transporter, permease protein; peptide ABC transporter permease complement(1517353..1518243) Shewanella amazonensis SB2B 4603485 YP_927111.1 CDS Sama_1234 NC_008700.1 1518230 1519261 R KEGG: son:SO1804 peptide ABC transporter, permease protein; peptide ABC transporter permease complement(1518230..1519261) Shewanella amazonensis SB2B 4603486 YP_927112.1 CDS Sama_1235 NC_008700.1 1519261 1520889 R KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; peptide ABC transporter substrate-binding protein complement(1519261..1520889) Shewanella amazonensis SB2B 4603487 YP_927113.1 CDS Sama_1236 NC_008700.1 1520960 1522033 R KEGG: son:SO1806 psp operon transcriptional activator; psp operon transcriptional activator complement(1520960..1522033) Shewanella amazonensis SB2B 4603488 YP_927114.1 CDS Sama_1237 NC_008700.1 1522209 1522892 D KEGG: son:SO1807 phage shock protein A; phage shock protein A 1522209..1522892 Shewanella amazonensis SB2B 4603489 YP_927115.1 CDS pspB NC_008700.1 1522917 1523156 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1522917..1523156 Shewanella amazonensis SB2B 4603490 YP_927116.1 CDS Sama_1239 NC_008700.1 1523143 1523538 D KEGG: son:SO1809 phage shock protein C; phage shock protein C 1523143..1523538 Shewanella amazonensis SB2B 4603491 YP_927117.1 CDS Sama_1240 NC_008700.1 1523627 1525048 D KEGG: son:SO1810 hypothetical ATPase; ATPase 1523627..1525048 Shewanella amazonensis SB2B 4603492 YP_927118.1 CDS Sama_1241 NC_008700.1 1525073 1526161 D KEGG: son:SO1811 hypothetical protein; hypothetical protein 1525073..1526161 Shewanella amazonensis SB2B 4603493 YP_927119.1 CDS Sama_1242 NC_008700.1 1526273 1527451 D KEGG: son:SO1812 methionine gamma-lyase; methionine gamma-lyase 1526273..1527451 Shewanella amazonensis SB2B 4603494 YP_927120.1 CDS Sama_1243 NC_008700.1 1527548 1527859 D KEGG: aci:ACIAD3064 putative DNA uptake protein and/or related DNA-binding protein; DNA uptake protein 1527548..1527859 Shewanella amazonensis SB2B 4603495 YP_927121.1 CDS Sama_1244 NC_008700.1 1528118 1528402 R KEGG: son:SO1814 hypothetical protein; hypothetical protein complement(1528118..1528402) Shewanella amazonensis SB2B 4605950 YP_927122.1 CDS Sama_1245 NC_008700.1 1528416 1529333 R KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase/AcuC/AphA family protein complement(1528416..1529333) Shewanella amazonensis SB2B 4603497 YP_927123.1 CDS Sama_1246 NC_008700.1 1529335 1530039 R KEGG: son:SO1816 hypothetical protein; hypothetical protein complement(1529335..1530039) Shewanella amazonensis SB2B 4603498 YP_927124.1 CDS Sama_1247 NC_008700.1 1530049 1530711 R KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' complement(1530049..1530711) Shewanella amazonensis SB2B 4603499 YP_927125.1 CDS Sama_1248 NC_008700.1 1530708 1531481 R KEGG: sdn:Sden_2430 protein of unknown function DUF81; hypothetical protein complement(1530708..1531481) Shewanella amazonensis SB2B 4603500 YP_927126.1 CDS dinG NC_008700.1 1531491 1533566 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(1531491..1533566) Shewanella amazonensis SB2B 4603501 YP_927127.1 CDS Sama_1250 NC_008700.1 1533668 1536073 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1533668..1536073 Shewanella amazonensis SB2B 4603502 YP_927128.1 CDS Sama_1251 NC_008700.1 1536292 1537500 D KEGG: son:SO1821 outer membrane porin, putative; outer membrane porin 1536292..1537500 Shewanella amazonensis SB2B 4603503 YP_927129.1 CDS Sama_1252 NC_008700.1 1537855 1540578 D KEGG: cps:CPS_3757 TonB-dependent receptor; TonB-dependent receptor 1537855..1540578 Shewanella amazonensis SB2B 4603504 YP_927130.1 CDS Sama_1253 NC_008700.1 1540648 1542429 D KEGG: ccr:CC2818 TPR domain protein; hypothetical protein 1540648..1542429 Shewanella amazonensis SB2B 4603505 YP_927131.1 CDS Sama_1254 NC_008700.1 1542695 1543477 D KEGG: sdn:Sden_2425 hypothetical protein; hypothetical protein 1542695..1543477 Shewanella amazonensis SB2B 4603506 YP_927132.1 CDS Sama_1255 NC_008700.1 1543477 1544832 D KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel family protein 1543477..1544832 Shewanella amazonensis SB2B 4603507 YP_927133.1 CDS Sama_1256 NC_008700.1 1544832 1545359 D KEGG: sdn:Sden_2423 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1544832..1545359 Shewanella amazonensis SB2B 4603508 YP_927134.1 CDS Sama_1257 NC_008700.1 1545373 1545777 D KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1545373..1545777 Shewanella amazonensis SB2B 4603509 YP_927135.1 CDS Sama_1258 NC_008700.1 1545780 1546400 D KEGG: sdn:Sden_2421 TonB-like protein; TonB-like protein 1545780..1546400 Shewanella amazonensis SB2B 4603510 YP_927136.1 CDS Sama_1259 NC_008700.1 1546403 1547653 D KEGG: son:SO1829 TPR domain protein; hypothetical protein 1546403..1547653 Shewanella amazonensis SB2B 4603511 YP_927137.1 CDS Sama_1260 NC_008700.1 1547696 1548205 R KEGG: son:SO1830 GGDEF domain protein protein; response regulator receiver protein complement(1547696..1548205) Shewanella amazonensis SB2B 4603512 YP_927138.1 CDS Sama_1261 NC_008700.1 1548284 1550113 D KEGG: son:SO1831 hypothetical protein; hypothetical protein 1548284..1550113 Shewanella amazonensis SB2B 4603513 YP_927139.1 CDS Sama_1262 NC_008700.1 1550238 1550516 D KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; peptidyl-prolyl cis-trans isomerase C 1550238..1550516 Shewanella amazonensis SB2B 4603514 YP_927140.1 CDS Sama_1263 NC_008700.1 1550643 1551185 D KEGG: son:SO1834 acetyltransferase, GNAT family; acetyltransferase 1550643..1551185 Shewanella amazonensis SB2B 4603515 YP_927141.1 CDS Sama_1264 NC_008700.1 1551255 1551485 D KEGG: sdn:Sden_2510 RNA-binding S4; RNA-binding protein S4 1551255..1551485 Shewanella amazonensis SB2B 4603516 YP_927142.1 CDS Sama_1265 NC_008700.1 1551497 1551898 D KEGG: sdn:Sden_2509 protein of unknown function DUF1260; hypothetical protein 1551497..1551898 Shewanella amazonensis SB2B 4603517 YP_927143.1 CDS Sama_1266 NC_008700.1 1552140 1552922 D KEGG: son:SO2846 hypothetical protein; hypothetical protein 1552140..1552922 Shewanella amazonensis SB2B 4603518 YP_927144.1 CDS Sama_1267 NC_008700.1 1553022 1554167 D KEGG: son:SO2844 exonuclease SbcD, putative; exonuclease SbcD 1553022..1554167 Shewanella amazonensis SB2B 4603519 YP_927145.1 CDS Sama_1268 NC_008700.1 1554164 1557226 D KEGG: son:SO2843 exonuclease SbcC, putative; exonuclease SbcC 1554164..1557226 Shewanella amazonensis SB2B 4603520 YP_927146.1 CDS Sama_1269 NC_008700.1 1557503 1558762 D KEGG: son:SO2842 peptidase, M23/M37 family; M24/M37 family peptidase 1557503..1558762 Shewanella amazonensis SB2B 4603521 YP_927147.1 CDS Sama_1270 NC_008700.1 1558878 1559306 R KEGG: son:SO2841 hypothetical protein; hypothetical protein complement(1558878..1559306) Shewanella amazonensis SB2B 4603522 YP_927148.1 CDS Sama_1271 NC_008700.1 1559653 1560150 R KEGG: son:SO2840 hypothetical protein; hypothetical protein complement(1559653..1560150) Shewanella amazonensis SB2B 4603523 YP_927149.1 CDS Sama_1272 NC_008700.1 1560147 1560584 R KEGG: son:SO2839 hypothetical protein; hypothetical protein complement(1560147..1560584) Shewanella amazonensis SB2B 4603524 YP_927150.1 CDS Sama_1273 NC_008700.1 1560665 1562035 R KEGG: sdn:Sden_1417 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase complement(1560665..1562035) Shewanella amazonensis SB2B 4603525 YP_927151.1 CDS Sama_1274 NC_008700.1 1562539 1563474 D KEGG: son:SO2836 hypothetical protein; hypothetical protein 1562539..1563474 Shewanella amazonensis SB2B 4603526 YP_927152.1 CDS Sama_1275 NC_008700.1 1563748 1565865 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1563748..1565865 Shewanella amazonensis SB2B 4603527 YP_927153.1 CDS nrdG NC_008700.1 1565906 1566403 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1565906..1566403 Shewanella amazonensis SB2B 4603528 YP_927154.1 CDS ribA NC_008700.1 1566656 1567273 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1566656..1567273 Shewanella amazonensis SB2B 4603529 YP_927155.1 CDS Sama_1278 NC_008700.1 1567327 1568151 D KEGG: sdn:Sden_1448 hypothetical protein; hypothetical protein 1567327..1568151 Shewanella amazonensis SB2B 4603530 YP_927156.1 CDS Sama_1279 NC_008700.1 1568223 1568858 R KEGG: rba:RB9658 hypothetical protein; hypothetical protein complement(1568223..1568858) Shewanella amazonensis SB2B 4603531 YP_927157.1 CDS Sama_1280 NC_008700.1 1568982 1570415 R KEGG: vvy:VV0693 carbon starvation protein; carbon starvation protein complement(1568982..1570415) Shewanella amazonensis SB2B 4603532 YP_927158.1 CDS Sama_1281 NC_008700.1 1570536 1571246 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(1570536..1571246) Shewanella amazonensis SB2B 4603533 YP_927159.1 CDS Sama_1282 NC_008700.1 1571243 1572952 R KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS complement(1571243..1572952) Shewanella amazonensis SB2B 4603534 YP_927160.1 CDS Sama_1283 NC_008700.1 1573081 1573323 D KEGG: ecp:ECP_1849 hypothetical protein YecH; hypothetical protein 1573081..1573323 Shewanella amazonensis SB2B 4603535 YP_927161.1 CDS Sama_1284 NC_008700.1 1573320 1573667 R KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein complement(1573320..1573667) Shewanella amazonensis SB2B 4603536 YP_927162.1 CDS Sama_1285 NC_008700.1 1573654 1574322 R KEGG: son:SO2808 hypothetical protein; hypothetical protein complement(1573654..1574322) Shewanella amazonensis SB2B 4603537 YP_927163.1 CDS Sama_1286 NC_008700.1 1574398 1574700 R KEGG: son:SO2807 hypothetical protein; hypothetical protein complement(1574398..1574700) Shewanella amazonensis SB2B 4603538 YP_927164.1 CDS Sama_1287 NC_008700.1 1574833 1575237 R KEGG: son:SO2806 hypothetical protein; hypothetical protein complement(1574833..1575237) Shewanella amazonensis SB2B 4603539 YP_927165.1 CDS Sama_1288 NC_008700.1 1575337 1576506 R KEGG: son:SO2805 putative uncharacterized protein involved in response to NO; hypothetical protein complement(1575337..1576506) Shewanella amazonensis SB2B 4603540 YP_927166.1 CDS Sama_1289 NC_008700.1 1576636 1577439 R KEGG: son:SO2260 extragenic suppressor protein SuhB; extragenic suppressor protein SuhB complement(1576636..1577439) Shewanella amazonensis SB2B 4603541 YP_927167.1 CDS Sama_1290 NC_008700.1 1577595 1578317 D KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1577595..1578317 Shewanella amazonensis SB2B 4603542 YP_927168.1 CDS Sama_1291 NC_008700.1 1578350 1579171 D KEGG: son:SO2262 serine acetyltransferase; Serine O-acetyltransferase 1578350..1579171 Shewanella amazonensis SB2B 4603543 YP_927169.1 CDS Sama_1292 NC_008700.1 1579364 1579825 D KEGG: son:SO2263 Rrf2 family protein; Rrf2 family protein 1579364..1579825 Shewanella amazonensis SB2B 4603544 YP_927170.1 CDS Sama_1293 NC_008700.1 1579903 1581117 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1579903..1581117 Shewanella amazonensis SB2B 4603545 YP_927171.1 CDS Sama_1294 NC_008700.1 1581148 1581531 D KEGG: son:SO2265 NifU family protein; scaffold protein 1581148..1581531 Shewanella amazonensis SB2B 4603546 YP_927172.1 CDS Sama_1295 NC_008700.1 1581544 1581867 D KEGG: son:SO2266 HesB/YadR/YfhF family protein; HesB/YadR/YfhF family protein 1581544..1581867 Shewanella amazonensis SB2B 4603547 YP_927173.1 CDS hscB NC_008700.1 1581877 1582401 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1581877..1582401 Shewanella amazonensis SB2B 4603548 YP_927174.1 CDS hscA NC_008700.1 1582456 1584315 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1582456..1584315 Shewanella amazonensis SB2B 4603549 YP_927175.1 CDS Sama_1298 NC_008700.1 1584324 1584659 D KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 1584324..1584659 Shewanella amazonensis SB2B 4603550 YP_927176.1 CDS Sama_1299 NC_008700.1 1584817 1585722 D KEGG: son:SO2270 ribosomal protein S6 modification protein; ribosomal protein S6 modification protein 1584817..1585722 Shewanella amazonensis SB2B 4603551 YP_927177.1 CDS Sama_1300 NC_008700.1 1585877 1586038 D KEGG: sfr:Sfri_2114 hypothetical protein; hypothetical protein 1585877..1586038 Shewanella amazonensis SB2B 4603552 YP_927178.1 CDS ndk NC_008700.1 1586191 1586622 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1586191..1586622 Shewanella amazonensis SB2B 4603553 YP_927179.1 CDS Sama_1302 NC_008700.1 1586764 1587117 R KEGG: son:SO2005 DksA-type zinc finger protein; TraR/DksA family transcriptional regulator complement(1586764..1587117) Shewanella amazonensis SB2B 4603554 YP_927180.1 CDS Sama_1303 NC_008700.1 1587305 1588273 R KEGG: son:SO2006 NifR3/Smm1 family protein; NifR3/Smm1 family protein complement(1587305..1588273) Shewanella amazonensis SB2B 4603555 YP_927181.1 CDS Sama_1304 NC_008700.1 1588539 1588982 D KEGG: son:SO2007 hypothetical protein; hypothetical protein 1588539..1588982 Shewanella amazonensis SB2B 4603556 YP_927182.1 CDS Sama_1305 NC_008700.1 1589045 1589881 D KEGG: sdn:Sden_2386 protein of unknown function DUF692; hypothetical protein 1589045..1589881 Shewanella amazonensis SB2B 4603557 YP_927183.1 CDS Sama_1306 NC_008700.1 1589878 1590636 D KEGG: sdn:Sden_2385 hypothetical protein; hypothetical protein 1589878..1590636 Shewanella amazonensis SB2B 4603558 YP_927184.1 CDS Sama_1307 NC_008700.1 1590741 1590860 D KEGG: sdn:Sden_2384 hypothetical protein; hypothetical protein 1590741..1590860 Shewanella amazonensis SB2B 4603559 YP_927185.1 CDS Sama_1308 NC_008700.1 1590950 1591321 D KEGG: son:SO2011 hypothetical protein; hypothetical protein 1590950..1591321 Shewanella amazonensis SB2B 4603560 YP_927186.1 CDS Sama_1309 NC_008700.1 1591486 1592031 D KEGG: sdn:Sden_2382 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 1591486..1592031 Shewanella amazonensis SB2B 4603561 YP_927187.1 CDS Sama_1310 NC_008700.1 1592157 1594886 D KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; DNA-directed DNA polymerase 1592157..1594886 Shewanella amazonensis SB2B 4603562 YP_927188.1 CDS Sama_1311 NC_008700.1 1595027 1595356 D KEGG: sdn:Sden_2380 conserved hypothetical protein 103; hypothetical protein 1595027..1595356 Shewanella amazonensis SB2B 4603563 YP_927189.1 CDS recR NC_008700.1 1595370 1595969 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1595370..1595969 Shewanella amazonensis SB2B 4603564 YP_927190.1 CDS Sama_1313 NC_008700.1 1596151 1598064 D molecular chaperone; heat shock protein 90 1596151..1598064 Shewanella amazonensis SB2B 4603565 YP_927191.1 CDS Sama_1314 NC_008700.1 1598135 1599010 D KEGG: son:SO2017 putative thioredoxin-like protein; putative thioredoxin-like protein 1598135..1599010 Shewanella amazonensis SB2B 4603566 YP_927192.1 CDS adk NC_008700.1 1599152 1599796 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1599152..1599796 Shewanella amazonensis SB2B 4603567 YP_927193.1 CDS hemH NC_008700.1 1599916 1600899 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1599916..1600899 Shewanella amazonensis SB2B 4603568 YP_927194.1 CDS Sama_1317 NC_008700.1 1601151 1602455 D KEGG: sdn:Sden_1431 inosine kinase; inosine kinase 1601151..1602455 Shewanella amazonensis SB2B 4603569 YP_927195.1 CDS Sama_1318 NC_008700.1 1602663 1603109 D KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1602663..1603109 Shewanella amazonensis SB2B 4603570 YP_927196.1 CDS Sama_1319 NC_008700.1 1603255 1604568 R KEGG: sdn:Sden_2331 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1603255..1604568) Shewanella amazonensis SB2B 4603571 YP_927197.1 CDS Sama_1320 NC_008700.1 1604790 1607255 D KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 1604790..1607255 Shewanella amazonensis SB2B 4603572 YP_927198.1 CDS Sama_1321 NC_008700.1 1607496 1608830 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(1607496..1608830) Shewanella amazonensis SB2B 4603573 YP_927199.1 CDS Sama_1322 NC_008700.1 1609167 1611785 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1609167..1611785 Shewanella amazonensis SB2B 4603574 YP_927200.1 CDS Sama_1323 NC_008700.1 1611884 1612657 R KEGG: son:SO2650 hypothetical protein; hypothetical protein complement(1611884..1612657) Shewanella amazonensis SB2B 4603575 YP_927201.1 CDS cysB NC_008700.1 1612876 1613850 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1612876..1613850 Shewanella amazonensis SB2B 4603576 YP_927202.1 CDS Sama_1325 NC_008700.1 1613908 1615284 R KEGG: son:SO2248 L-serine dehydratase 1; L-serine ammonia-lyase complement(1613908..1615284) Shewanella amazonensis SB2B 4603577 YP_927203.1 CDS Sama_1326 NC_008700.1 1615624 1616649 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1615624..1616649 Shewanella amazonensis SB2B 4603578 YP_927204.1 CDS Sama_1327 NC_008700.1 1616758 1617300 D KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein 1616758..1617300 Shewanella amazonensis SB2B 4603579 YP_927205.1 CDS Sama_1328 NC_008700.1 1617762 1618037 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1617762..1618037 Shewanella amazonensis SB2B 4603580 YP_927206.1 CDS Sama_1329 NC_008700.1 1618028 1619212 R KEGG: sdn:Sden_1673 hypothetical protein; hypothetical protein complement(1618028..1619212) Shewanella amazonensis SB2B 4603581 YP_927207.1 CDS Sama_1330 NC_008700.1 1619212 1622679 R KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor complement(1619212..1622679) Shewanella amazonensis SB2B 4603582 YP_927208.1 CDS Sama_1331 NC_008700.1 1622748 1623329 R KEGG: son:SO2256 hypothetical protein; hypothetical protein complement(1622748..1623329) Shewanella amazonensis SB2B 4603583 YP_927209.1 CDS Sama_1332 NC_008700.1 1623415 1624650 D KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; lipoprotein releasing system transmembrane protein LolE 1623415..1624650 Shewanella amazonensis SB2B 4603584 YP_927210.1 CDS Sama_1333 NC_008700.1 1624715 1625404 D KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; lipoprotein releasing system ATP-binding protein LolD 1624715..1625404 Shewanella amazonensis SB2B 4603585 YP_927211.1 CDS Sama_1334 NC_008700.1 1625401 1626663 D KEGG: sdn:Sden_1678 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1625401..1626663 Shewanella amazonensis SB2B 4603586 YP_927212.1 CDS Sama_1335 NC_008700.1 1626861 1627370 R KEGG: son:SO2804 hypothetical protein; hypothetical protein complement(1626861..1627370) Shewanella amazonensis SB2B 4603587 YP_927213.1 CDS Sama_1336 NC_008700.1 1627401 1629698 D KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1627401..1629698 Shewanella amazonensis SB2B 4603588 YP_927214.1 CDS Sama_1337 NC_008700.1 1629732 1631531 D KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; ABC transporter ATP-binding protein 1629732..1631531 Shewanella amazonensis SB2B 4603589 YP_927215.1 CDS lpxK NC_008700.1 1631534 1632583 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1631534..1632583 Shewanella amazonensis SB2B 4603590 YP_927216.1 CDS Sama_1339 NC_008700.1 1632573 1632758 D KEGG: son:SO2800 hypothetical protein; hypothetical protein 1632573..1632758 Shewanella amazonensis SB2B 4603591 YP_927217.1 CDS Sama_1340 NC_008700.1 1633021 1633770 D KEGG: sdn:Sden_2196 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 1633021..1633770 Shewanella amazonensis SB2B 4603592 YP_927218.1 CDS Sama_1341 NC_008700.1 1633771 1634241 R KEGG: pat:Patl_2623 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(1633771..1634241) Shewanella amazonensis SB2B 4603593 YP_927219.1 CDS Sama_1342 NC_008700.1 1634681 1635196 R KEGG: ilo:IL0786 phosphinothricin N-acetyltransferase, putative; phosphinothricin N-acetyltransferase complement(1634681..1635196) Shewanella amazonensis SB2B 4603594 YP_927220.1 CDS Sama_1343 NC_008700.1 1635729 1636145 R hypothetical protein complement(1635729..1636145) Shewanella amazonensis SB2B 4603595 YP_927221.1 CDS Sama_1344 NC_008700.1 1636239 1636631 R hypothetical protein complement(1636239..1636631) Shewanella amazonensis SB2B 4603596 YP_927222.1 CDS Sama_1345 NC_008700.1 1636724 1637206 R hypothetical protein complement(1636724..1637206) Shewanella amazonensis SB2B 4603597 YP_927223.1 CDS Sama_1346 NC_008700.1 1637278 1637688 R hypothetical protein complement(1637278..1637688) Shewanella amazonensis SB2B 4603598 YP_927224.1 CDS Sama_1347 NC_008700.1 1637911 1638360 R hypothetical protein complement(1637911..1638360) Shewanella amazonensis SB2B 4603599 YP_927225.1 CDS Sama_1348 NC_008700.1 1638456 1638986 R KEGG: lpp:lpp2955 hypothetical protein; hypothetical protein complement(1638456..1638986) Shewanella amazonensis SB2B 4603600 YP_927226.1 CDS Sama_1349 NC_008700.1 1639088 1639849 R KEGG: vch:VCA0356 hypothetical protein; hypothetical protein complement(1639088..1639849) Shewanella amazonensis SB2B 4603601 YP_927227.1 CDS Sama_1350 NC_008700.1 1639873 1640202 R hypothetical protein complement(1639873..1640202) Shewanella amazonensis SB2B 4603602 YP_927228.1 CDS Sama_1351 NC_008700.1 1640228 1641382 R KEGG: pab:PAB0087 related beta-lactamase precursor; beta-lactamase class C-like protein complement(1640228..1641382) Shewanella amazonensis SB2B 4603603 YP_927229.1 CDS Sama_1352 NC_008700.1 1641515 1641769 R hypothetical protein complement(1641515..1641769) Shewanella amazonensis SB2B 4603604 YP_927230.1 CDS Sama_1353 NC_008700.1 1641841 1642863 R KEGG: sit:TM1040_2021 hypothetical protein; hypothetical protein complement(1641841..1642863) Shewanella amazonensis SB2B 4603605 YP_927231.1 CDS Sama_1354 NC_008700.1 1642945 1643427 R hypothetical protein complement(1642945..1643427) Shewanella amazonensis SB2B 4603606 YP_927232.1 CDS Sama_1355 NC_008700.1 1643758 1644714 D KEGG: son:SO2037 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase 1643758..1644714 Shewanella amazonensis SB2B 4603607 YP_927233.1 CDS Sama_1356 NC_008700.1 1645192 1645848 R KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; 3-oxoacid CoA-transferase complement(1645192..1645848) Shewanella amazonensis SB2B 4603608 YP_927234.1 CDS Sama_1357 NC_008700.1 1645859 1646560 R KEGG: son:SO1892 acetate CoA-transferase, subunit A; 3-oxoacid CoA-transferase complement(1645859..1646560) Shewanella amazonensis SB2B 4603609 YP_927235.1 CDS Sama_1358 NC_008700.1 1646667 1647557 R KEGG: she:Shewmr4_2326 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(1646667..1647557) Shewanella amazonensis SB2B 4603610 YP_927236.1 CDS Sama_1359 NC_008700.1 1647559 1649580 R KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; 3-methylcrotonyl-CoA carboxylase subunit alpha complement(1647559..1649580) Shewanella amazonensis SB2B 4603611 YP_927237.1 CDS Sama_1360 NC_008700.1 1649591 1650421 R KEGG: sdn:Sden_2247 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1649591..1650421) Shewanella amazonensis SB2B 4603612 YP_927238.1 CDS Sama_1361 NC_008700.1 1650432 1652039 R KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; propionyl-CoA carboxylase complement(1650432..1652039) Shewanella amazonensis SB2B 4603613 YP_927239.1 CDS Sama_1362 NC_008700.1 1652157 1653326 R KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase complement(1652157..1653326) Shewanella amazonensis SB2B 4603614 YP_927240.1 CDS Sama_1363 NC_008700.1 1653411 1653815 R KEGG: son:SO1898 transcriptional regulator, putative; MerR family transcriptional regulator complement(1653411..1653815) Shewanella amazonensis SB2B 4603615 YP_927241.1 CDS Sama_1364 NC_008700.1 1654188 1656122 D KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; acyl-coenzyme A synthetase/AMP-(fatty) acid ligase 1654188..1656122 Shewanella amazonensis SB2B 4603616 YP_927242.1 CDS Sama_1365 NC_008700.1 1656305 1657840 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1656305..1657840 Shewanella amazonensis SB2B 4603617 YP_927243.1 CDS Sama_1366 NC_008700.1 1657990 1658955 R KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1657990..1658955) Shewanella amazonensis SB2B 4603618 YP_927244.1 CDS Sama_1367 NC_008700.1 1659088 1659984 D KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 1659088..1659984 Shewanella amazonensis SB2B 4603619 YP_927245.1 CDS Sama_1368 NC_008700.1 1660050 1660919 D KEGG: son:SO1912 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 1660050..1660919 Shewanella amazonensis SB2B 4603620 YP_927246.1 CDS Sama_1369 NC_008700.1 1660919 1661326 D KEGG: son:SO1913 hypothetical protein; hypothetical protein 1660919..1661326 Shewanella amazonensis SB2B 4603621 YP_927247.1 CDS Sama_1370 NC_008700.1 1661333 1661920 D KEGG: son:SO1672 hypothetical protein; hypothetical protein 1661333..1661920 Shewanella amazonensis SB2B 4603622 YP_927248.1 CDS Sama_1371 NC_008700.1 1662435 1663076 D receptor for colicin S4; outer membrane protein W 1662435..1663076 Shewanella amazonensis SB2B 4603623 YP_927249.1 CDS Sama_1372 NC_008700.1 1663163 1663987 R KEGG: son:SO1674 short chain dehydrogenase family protein; short chain dehydrogenase family protein complement(1663163..1663987) Shewanella amazonensis SB2B 4603624 YP_927250.1 CDS Sama_1373 NC_008700.1 1664025 1664435 D KEGG: son:SO1675 hypothetical protein; hypothetical protein 1664025..1664435 Shewanella amazonensis SB2B 4603625 YP_927251.1 CDS Sama_1374 NC_008700.1 1664497 1665447 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1664497..1665447 Shewanella amazonensis SB2B 4603626 YP_927252.1 CDS Sama_1375 NC_008700.1 1665719 1666897 D KEGG: son:SO1677 acetyl-CoA acetyltransferase; Acetyl-CoA C-acetyltransferase 1665719..1666897 Shewanella amazonensis SB2B 4603627 YP_927253.1 CDS Sama_1376 NC_008700.1 1667012 1668505 D KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1667012..1668505 Shewanella amazonensis SB2B 4603628 YP_927254.1 CDS Sama_1377 NC_008700.1 1668615 1669772 D KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; butyryl-CoA dehydrogenase 1668615..1669772 Shewanella amazonensis SB2B 4603629 YP_927255.1 CDS Sama_1378 NC_008700.1 1669826 1670599 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1669826..1670599 Shewanella amazonensis SB2B 4603630 YP_927256.1 CDS Sama_1379 NC_008700.1 1670638 1671744 D KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein 1670638..1671744 Shewanella amazonensis SB2B 4603631 YP_927257.1 CDS Sama_1380 NC_008700.1 1671828 1672733 D KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 1671828..1672733 Shewanella amazonensis SB2B 4603632 YP_927258.1 CDS fabG NC_008700.1 1672743 1673501 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1672743..1673501 Shewanella amazonensis SB2B 4603633 YP_927259.1 CDS Sama_1382 NC_008700.1 1673593 1673913 D KEGG: sdn:Sden_1936 hypothetical protein; hypothetical protein 1673593..1673913 Shewanella amazonensis SB2B 4603634 YP_927260.1 CDS Sama_1383 NC_008700.1 1673968 1676028 D KEGG: son:SO1686 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 1673968..1676028 Shewanella amazonensis SB2B 4603635 YP_927261.1 CDS Sama_1384 NC_008700.1 1676123 1676803 R KEGG: eca:ECA3190 streptogramin A acetyl transferase; streptogramin A acetyl transferase complement(1676123..1676803) Shewanella amazonensis SB2B 4603636 YP_927262.1 CDS Sama_1385 NC_008700.1 1676878 1677390 R KEGG: ppr:PBPRB1050 hypothetical protein; hypothetical protein complement(1676878..1677390) Shewanella amazonensis SB2B 4603637 YP_927263.1 CDS Sama_1386 NC_008700.1 1677573 1679168 D KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1677573..1679168 Shewanella amazonensis SB2B 4603638 YP_927264.1 CDS Sama_1387 NC_008700.1 1679345 1679725 D KEGG: pat:Patl_1937 hypothetical protein; hypothetical protein 1679345..1679725 Shewanella amazonensis SB2B 4603639 YP_927265.1 CDS Sama_1388 NC_008700.1 1679815 1680708 R KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1679815..1680708) Shewanella amazonensis SB2B 4603640 YP_927266.1 CDS Sama_1389 NC_008700.1 1680855 1681295 D KEGG: son:SO3319 hypothetical protein; hypothetical protein 1680855..1681295 Shewanella amazonensis SB2B 4603641 YP_927267.1 CDS Sama_1390 NC_008700.1 1681305 1682000 D KEGG: vpa:VPA0042 hypothetical protein; hypothetical protein 1681305..1682000 Shewanella amazonensis SB2B 4603642 YP_927268.1 CDS Sama_1391 NC_008700.1 1682171 1682764 D KEGG: vpa:VPA0465 putative NAD(P)H oxidoreductase; putative NAD(P)H oxidoreductase 1682171..1682764 Shewanella amazonensis SB2B 4603643 YP_927269.1 CDS Sama_1392 NC_008700.1 1682761 1684686 D KEGG: vpa:VPA0464 putative TrkA family protein; putative TrkA family protein 1682761..1684686 Shewanella amazonensis SB2B 4603644 YP_927270.1 CDS Sama_1393 NC_008700.1 1684735 1685295 R KEGG: son:SO1715 hypothetical protein; hypothetical protein complement(1684735..1685295) Shewanella amazonensis SB2B 4603645 YP_927271.1 CDS Sama_1394 NC_008700.1 1685437 1687578 R KEGG: pat:Patl_2402 TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(1685437..1687578) Shewanella amazonensis SB2B 4603646 YP_927272.1 CDS Sama_1395 NC_008700.1 1687831 1688274 D KEGG: vpa:VPA0219 hypothetical protein; hypothetical protein 1687831..1688274 Shewanella amazonensis SB2B 4603647 YP_927273.1 CDS Sama_1396 NC_008700.1 1688784 1691438 D KEGG: cps:CPS_3716 glycosyl hydrolase, family 16; glucan endo-1,3-beta-D-glucosidase 1688784..1691438 Shewanella amazonensis SB2B 4603648 YP_927274.1 CDS Sama_1397 NC_008700.1 1691528 1694554 D KEGG: sdn:Sden_2610 TonB-dependent receptor; TonB-dependent receptor 1691528..1694554 Shewanella amazonensis SB2B 4603649 YP_927275.1 CDS Sama_1398 NC_008700.1 1694638 1695435 R KEGG: vvu:VV12807 hypothetical protein; hypothetical protein complement(1694638..1695435) Shewanella amazonensis SB2B 4603650 YP_927276.1 CDS Sama_1399 NC_008700.1 1695646 1698549 R KEGG: sdn:Sden_2610 TonB-dependent receptor; TonB-dependent receptor complement(1695646..1698549) Shewanella amazonensis SB2B 4603651 YP_927277.1 CDS Sama_1400 NC_008700.1 1698830 1699828 R KEGG: sdn:Sden_2609 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1698830..1699828) Shewanella amazonensis SB2B 4603652 YP_927278.1 CDS Sama_1401 NC_008700.1 1699855 1701189 R KEGG: sdn:Sden_2608 sugar (glycoside-Pentoside-Hexuronide) transporter; sugar (glycoside-Pentoside-hexuronide) transporter complement(1699855..1701189) Shewanella amazonensis SB2B 4603653 YP_927279.1 CDS Sama_1402 NC_008700.1 1701207 1702565 R KEGG: sdn:Sden_2607 beta-glucosidase; Beta-glucosidase complement(1701207..1702565) Shewanella amazonensis SB2B 4603654 YP_927280.1 CDS Sama_1403 NC_008700.1 1702793 1704040 D KEGG: sdn:Sden_2027 glucose/galactose transporter; glucose/galactose transporter 1702793..1704040 Shewanella amazonensis SB2B 4603655 YP_927281.1 CDS Sama_1404 NC_008700.1 1704037 1706616 D KEGG: sdn:Sden_2605 beta-glucosidase; beta-glucosidase 1704037..1706616 Shewanella amazonensis SB2B 4603656 YP_927282.1 CDS Sama_1405 NC_008700.1 1706682 1707614 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1706682..1707614 Shewanella amazonensis SB2B 4603657 YP_927283.1 CDS Sama_1406 NC_008700.1 1707878 1708816 D KEGG: sdn:Sden_1682 protein of unknown function DUF6, transmembrane; hypothetical protein 1707878..1708816 Shewanella amazonensis SB2B 4603658 YP_927284.1 CDS Sama_1407 NC_008700.1 1708823 1709323 R KEGG: son:SO1722 ACT domain protein; ACT domain-containing protein complement(1708823..1709323) Shewanella amazonensis SB2B 4603659 YP_927285.1 CDS Sama_1408 NC_008700.1 1709536 1711791 D KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1709536..1711791 Shewanella amazonensis SB2B 4603660 YP_927286.1 CDS Sama_1409 NC_008700.1 1711855 1713507 D KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1711855..1713507 Shewanella amazonensis SB2B 4603661 YP_927287.1 CDS Sama_1410 NC_008700.1 1713543 1714361 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1713543..1714361 Shewanella amazonensis SB2B 4603662 YP_927288.1 CDS Sama_1411 NC_008700.1 1714385 1715095 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1714385..1715095 Shewanella amazonensis SB2B 4603663 YP_927289.1 CDS Sama_1412 NC_008700.1 1715337 1715909 D KEGG: son:SO1736 hypothetical protein; hypothetical protein 1715337..1715909 Shewanella amazonensis SB2B 4603664 YP_927290.1 CDS Sama_1413 NC_008700.1 1716051 1716452 R KEGG: son:SO0883 hypothetical protein; hypothetical protein complement(1716051..1716452) Shewanella amazonensis SB2B 4603665 YP_927291.1 CDS Sama_1414 NC_008700.1 1716490 1716903 R KEGG: rme:Rmet_5065 hypothetical protein; hypothetical protein complement(1716490..1716903) Shewanella amazonensis SB2B 4603666 YP_927292.1 CDS Sama_1415 NC_008700.1 1716968 1717834 R KEGG: sdn:Sden_2195 beta-lactamase-like protein; beta-lactamase-like protein complement(1716968..1717834) Shewanella amazonensis SB2B 4603667 YP_927293.1 CDS Sama_1416 NC_008700.1 1718572 1720320 D KEGG: vpa:VPA0991 hypothetical protein; hypothetical protein 1718572..1720320 Shewanella amazonensis SB2B 4603668 YP_927294.1 CDS Sama_1417 NC_008700.1 1720428 1722065 R KEGG: vpa:VPA0990 hypothetical protein; hypothetical protein complement(1720428..1722065) Shewanella amazonensis SB2B 4603669 YP_927295.1 CDS Sama_1418 NC_008700.1 1722268 1723611 R KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family; response regulator receiver protein complement(1722268..1723611) Shewanella amazonensis SB2B 4603670 YP_927296.1 CDS Sama_1419 NC_008700.1 1723751 1726810 R KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein complement(1723751..1726810) Shewanella amazonensis SB2B 4603671 YP_927297.1 CDS Sama_1420 NC_008700.1 1726807 1730052 R KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein complement(1726807..1730052) Shewanella amazonensis SB2B 4603672 YP_927298.1 CDS Sama_1421 NC_008700.1 1730065 1731129 R KEGG: son:SO1925 HlyD family secretion protein; HlyD family secretion protein complement(1730065..1731129) Shewanella amazonensis SB2B 4603673 YP_927299.1 CDS gltA NC_008700.1 1731406 1732692 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1731406..1732692) Shewanella amazonensis SB2B 4603674 YP_927300.1 CDS Sama_1423 NC_008700.1 1733105 1733500 D KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 1733105..1733500 Shewanella amazonensis SB2B 4603675 YP_927301.1 CDS Sama_1424 NC_008700.1 1733494 1733841 D KEGG: sdn:Sden_2186 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome subunit B 1733494..1733841 Shewanella amazonensis SB2B 4603676 YP_927302.1 CDS sdhA NC_008700.1 1733843 1735609 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1733843..1735609 Shewanella amazonensis SB2B 4603677 YP_927303.1 CDS sdhB NC_008700.1 1735622 1736329 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1735622..1736329 Shewanella amazonensis SB2B 4603678 YP_927304.1 CDS sucA NC_008700.1 1736522 1739344 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1736522..1739344 Shewanella amazonensis SB2B 4603679 YP_927305.1 CDS Sama_1428 NC_008700.1 1739373 1740575 D KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) 1739373..1740575 Shewanella amazonensis SB2B 4603680 YP_927306.1 CDS sucC NC_008700.1 1740653 1741819 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1740653..1741819 Shewanella amazonensis SB2B 4603681 YP_927307.1 CDS Sama_1430 NC_008700.1 1741819 1742691 D KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase alpha chain 1741819..1742691 Shewanella amazonensis SB2B 4603682 YP_927308.1 CDS Sama_1431 NC_008700.1 1742800 1743717 D KEGG: sdn:Sden_2179 auxin efflux carrier; auxin efflux carrier 1742800..1743717 Shewanella amazonensis SB2B 4603683 YP_927309.1 CDS Sama_1432 NC_008700.1 1743844 1744347 D KEGG: sdn:Sden_1591 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1743844..1744347 Shewanella amazonensis SB2B 4603684 YP_927310.1 CDS Sama_1433 NC_008700.1 1744664 1745074 D KEGG: son:SO1935 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 1744664..1745074 Shewanella amazonensis SB2B 4603685 YP_927311.1 CDS fur NC_008700.1 1745162 1745647 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(1745162..1745647) Shewanella amazonensis SB2B 4603686 YP_927312.1 CDS Sama_1435 NC_008700.1 1745846 1746592 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1745846..1746592 Shewanella amazonensis SB2B 4603687 YP_927313.1 CDS Sama_1436 NC_008700.1 1746650 1747036 D KEGG: son:SO1939 hypothetical protein; hypothetical protein 1746650..1747036 Shewanella amazonensis SB2B 4603688 YP_927314.1 CDS Sama_1437 NC_008700.1 1747044 1748354 R KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1747044..1748354) Shewanella amazonensis SB2B 4603689 YP_927315.1 CDS Sama_1438 NC_008700.1 1748465 1749529 D KEGG: son:SO2740 biotin synthase; biotin synthase 1748465..1749529 Shewanella amazonensis SB2B 4603690 YP_927316.1 CDS Sama_1439 NC_008700.1 1749546 1750703 D KEGG: she:Shewmr4_2358 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1749546..1750703 Shewanella amazonensis SB2B 4603691 YP_927317.1 CDS Sama_1440 NC_008700.1 1750700 1751446 D KEGG: son:SO2738 biotin synthesis protein BioC; biotin synthesis protein BioC 1750700..1751446 Shewanella amazonensis SB2B 4603692 YP_927318.1 CDS bioD NC_008700.1 1751443 1752135 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1751443..1752135 Shewanella amazonensis SB2B 4603693 YP_927319.1 CDS Sama_1442 NC_008700.1 1752234 1752941 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(1752234..1752941) Shewanella amazonensis SB2B 4603694 YP_927320.1 CDS Sama_1443 NC_008700.1 1753224 1754114 D putative metalloprotease; heat shock protein HtpX 1753224..1754114 Shewanella amazonensis SB2B 4603695 YP_927321.1 CDS Sama_1444 NC_008700.1 1754414 1754779 D KEGG: son:SO2727 cytochrome c3; cytochrome c3 1754414..1754779 Shewanella amazonensis SB2B 4603696 YP_927322.1 CDS Sama_1445 NC_008700.1 1754883 1756043 D KEGG: pha:PSHAa2962 hypothetical protein; hypothetical protein 1754883..1756043 Shewanella amazonensis SB2B 4603697 YP_927323.1 CDS Sama_1446 NC_008700.1 1756407 1757039 D KEGG: sdn:Sden_2327 regulatory protein, LuxR; response regulator receiver protein 1756407..1757039 Shewanella amazonensis SB2B 4603698 YP_927324.1 CDS Sama_1447 NC_008700.1 1757126 1758889 R KEGG: son:SO2724 protease, putative; protease complement(1757126..1758889) Shewanella amazonensis SB2B 4603699 YP_927325.1 CDS Sama_1448 NC_008700.1 1759077 1759430 D KEGG: son:SO2723 HIT family protein; HIT family protein 1759077..1759430 Shewanella amazonensis SB2B 4603700 YP_927326.1 CDS Sama_1449 NC_008700.1 1759442 1760431 D KEGG: sdn:Sden_2324 phenylacetic acid degradation-related protein; hypothetical protein 1759442..1760431 Shewanella amazonensis SB2B 4603701 YP_927327.1 CDS Sama_1450 NC_008700.1 1760582 1761001 D KEGG: son:SO2720 hypothetical protein; hypothetical protein 1760582..1761001 Shewanella amazonensis SB2B 4603702 YP_927328.1 CDS Sama_1451 NC_008700.1 1761372 1763564 D KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 1761372..1763564 Shewanella amazonensis SB2B 4603703 YP_927329.1 CDS Sama_1452 NC_008700.1 1763626 1763889 D KEGG: son:SO2714 hypothetical protein; hypothetical protein 1763626..1763889 Shewanella amazonensis SB2B 4603704 YP_927330.1 CDS Sama_1453 NC_008700.1 1763893 1764540 D KEGG: son:SO2713 transporter, putative; transporter 1763893..1764540 Shewanella amazonensis SB2B 4603705 YP_927331.1 CDS Sama_1454 NC_008700.1 1764537 1765565 D KEGG: sdn:Sden_2318 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1764537..1765565 Shewanella amazonensis SB2B 4603706 YP_927332.1 CDS Sama_1455 NC_008700.1 1765629 1766477 D KEGG: sdn:Sden_2317 hypothetical protein; hypothetical protein 1765629..1766477 Shewanella amazonensis SB2B 4603707 YP_927333.1 CDS Sama_1456 NC_008700.1 1766619 1767215 D KEGG: son:SO2710 hypothetical protein; hypothetical protein 1766619..1767215 Shewanella amazonensis SB2B 4603708 YP_927334.1 CDS Sama_1457 NC_008700.1 1767332 1767880 D KEGG: son:SO2708 nitroreductase family protein; nitroreductase family protein 1767332..1767880 Shewanella amazonensis SB2B 4603709 YP_927335.1 CDS Sama_1458 NC_008700.1 1767926 1768660 R KEGG: vvy:VV2889 uncharacterized flavoprotein; flavoprotein complement(1767926..1768660) Shewanella amazonensis SB2B 4603710 YP_927336.1 CDS Sama_1459 NC_008700.1 1768677 1769288 R KEGG: vvy:VV2888 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(1768677..1769288) Shewanella amazonensis SB2B 4603711 YP_927337.1 CDS Sama_1460 NC_008700.1 1769384 1769893 D KEGG: son:SO2707 acetyltransferase, GNAT family; acetyltransferase 1769384..1769893 Shewanella amazonensis SB2B 4603712 YP_927338.1 CDS Sama_1461 NC_008700.1 1770080 1770703 D KEGG: son:SO3563 SM-20 domain protein; SM-20 domain-containing protein 1770080..1770703 Shewanella amazonensis SB2B 4603713 YP_927339.1 CDS Sama_1462 NC_008700.1 1770781 1772280 R KEGG: rba:RB5189 hypothetical protein-transmembrane prediction; hypothetical protein complement(1770781..1772280) Shewanella amazonensis SB2B 4603714 YP_927340.1 CDS Sama_1463 NC_008700.1 1772306 1773613 R KEGG: bja:bll5078 hypothetical protein; hypothetical protein complement(1772306..1773613) Shewanella amazonensis SB2B 4603715 YP_927341.1 CDS Sama_1464 NC_008700.1 1773623 1774795 R KEGG: 5-oxo-L-prolinase, putative; hypothetical protein complement(1773623..1774795) Shewanella amazonensis SB2B 4603716 YP_927342.1 CDS Sama_1465 NC_008700.1 1775050 1775670 D KEGG: son:SO2850 acetyltransferase, GNAT family; acetyltransferase 1775050..1775670 Shewanella amazonensis SB2B 4603717 YP_927343.1 CDS Sama_1466 NC_008700.1 1775777 1776190 D KEGG: son:SO2848 hypothetical protein; hypothetical protein 1775777..1776190 Shewanella amazonensis SB2B 4603718 YP_927344.1 CDS Sama_1467 NC_008700.1 1776409 1776789 D hypothetical protein 1776409..1776789 Shewanella amazonensis SB2B 4603719 YP_927345.1 CDS Sama_1468 NC_008700.1 1776898 1777590 D KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein; putative macrolide efflux ABC transporter ATP-binding protein 1776898..1777590 Shewanella amazonensis SB2B 4603720 YP_927346.1 CDS Sama_1469 NC_008700.1 1777583 1778563 D KEGG: pae:PA4591 hypothetical protein; multidrug resistance efflux pump-like protein 1777583..1778563 Shewanella amazonensis SB2B 4603721 YP_927347.1 CDS Sama_1470 NC_008700.1 1778560 1779744 D KEGG: dvu:DVU2439 efflux transporter, RND family, MFP subunit; membrane-fusion protein 1778560..1779744 Shewanella amazonensis SB2B 4603722 YP_927348.1 CDS Sama_1471 NC_008700.1 1779741 1780943 D KEGG: ttj:TTHA1006 HlyD family secretion protein; membrane-fusion protein 1779741..1780943 Shewanella amazonensis SB2B 4603723 YP_927349.1 CDS Sama_1472 NC_008700.1 1780940 1782193 D KEGG: tel:tll1383 ABC transporter permease protein; ABC transporter permease 1780940..1782193 Shewanella amazonensis SB2B 4603724 YP_927350.1 CDS Sama_1473 NC_008700.1 1782168 1782974 R KEGG: son:SO1839 hypothetical protein; hypothetical protein complement(1782168..1782974) Shewanella amazonensis SB2B 4603725 YP_927351.1 CDS Sama_1474 NC_008700.1 1783169 1784260 D KEGG: son:SO1840 hypothetical protein; hypothetical protein 1783169..1784260 Shewanella amazonensis SB2B 4603726 YP_927352.1 CDS Sama_1475 NC_008700.1 1784250 1785296 D KEGG: bpe:BP0459 hypothetical protein; hypothetical protein 1784250..1785296 Shewanella amazonensis SB2B 4603727 YP_927353.1 CDS Sama_1476 NC_008700.1 1785293 1785793 D KEGG: son:SO1843 hypothetical protein; hypothetical protein 1785293..1785793 Shewanella amazonensis SB2B 4603728 YP_927354.1 CDS Sama_1477 NC_008700.1 1786054 1788897 D KEGG: sdn:Sden_2272 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1786054..1788897 Shewanella amazonensis SB2B 4603729 YP_927355.1 CDS Sama_1478 NC_008700.1 1789277 1790353 D KEGG: vvy:VVA1362 arsenite efflux pump ACR3; arsenite efflux pump ACR3 1789277..1790353 Shewanella amazonensis SB2B 4603730 YP_927356.1 CDS Sama_1479 NC_008700.1 1790482 1790799 R KEGG: son:SO2062 hypothetical protein; hypothetical protein complement(1790482..1790799) Shewanella amazonensis SB2B 4603731 YP_927357.1 CDS Sama_1480 NC_008700.1 1790812 1791000 R KEGG: son:SO2063 hypothetical protein; hypothetical protein complement(1790812..1791000) Shewanella amazonensis SB2B 4603732 YP_927358.1 CDS Sama_1481 NC_008700.1 1791012 1794314 R KEGG: son:SO2064 hypothetical protein; hypothetical protein complement(1791012..1794314) Shewanella amazonensis SB2B 4603733 YP_927359.1 CDS Sama_1482 NC_008700.1 1794452 1795843 R KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative; aminotransferase complement(1794452..1795843) Shewanella amazonensis SB2B 4603734 YP_927360.1 CDS Sama_1483 NC_008700.1 1796061 1797125 R KEGG: son:SO2929 hypothetical protein; hypothetical protein complement(1796061..1797125) Shewanella amazonensis SB2B 4603735 YP_927361.1 CDS Sama_1484 NC_008700.1 1797325 1798458 R KEGG: cps:CPS_0402 hypothetical protein; hypothetical protein complement(1797325..1798458) Shewanella amazonensis SB2B 4603736 YP_927362.1 CDS Sama_1485 NC_008700.1 1798568 1799155 R KEGG: sfr:Sfri_2568 arylesterase; arylesterase complement(1798568..1799155) Shewanella amazonensis SB2B 4603737 YP_927363.1 CDS Sama_1486 NC_008700.1 1799184 1799933 D KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1799184..1799933 Shewanella amazonensis SB2B 4603738 YP_927364.1 CDS Sama_1487 NC_008700.1 1799927 1802383 D KEGG: son:SO2926 ABC transporter, permease, putative; ABC transporter permease 1799927..1802383 Shewanella amazonensis SB2B 4603739 YP_927365.1 CDS Sama_1488 NC_008700.1 1802387 1803274 R KEGG: sdn:Sden_2362 hypothetical protein; hypothetical protein complement(1802387..1803274) Shewanella amazonensis SB2B 4603740 YP_927366.1 CDS folX NC_008700.1 1803333 1803701 R catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase complement(1803333..1803701) Shewanella amazonensis SB2B 4603741 YP_927367.1 CDS Sama_1490 NC_008700.1 1803781 1804857 D KEGG: son:SO2920 hypothetical protein; hypothetical protein 1803781..1804857 Shewanella amazonensis SB2B 4603742 YP_927368.1 CDS Sama_1491 NC_008700.1 1804939 1805865 D KEGG: sdn:Sden_2359 hypothetical protein; hypothetical protein 1804939..1805865 Shewanella amazonensis SB2B 4603743 YP_927369.1 CDS Sama_1492 NC_008700.1 1806001 1806219 R KEGG: shm:Shewmr7_1552 hypothetical protein; hypothetical protein complement(1806001..1806219) Shewanella amazonensis SB2B 4603744 YP_927370.1 CDS Sama_1493 NC_008700.1 1806858 1807295 R KEGG: son:SO2917 hypothetical protein; hypothetical protein complement(1806858..1807295) Shewanella amazonensis SB2B 4603745 YP_927371.1 CDS Sama_1494 NC_008700.1 1807689 1809827 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1807689..1809827) Shewanella amazonensis SB2B 4603746 YP_927372.1 CDS Sama_1495 NC_008700.1 1809919 1811118 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1809919..1811118) Shewanella amazonensis SB2B 4603747 YP_927373.1 CDS Sama_1496 NC_008700.1 1811290 1811733 D KEGG: son:SO2914 hypothetical protein; hypothetical protein 1811290..1811733 Shewanella amazonensis SB2B 4603748 YP_927374.1 CDS pflA NC_008700.1 1811791 1812531 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1811791..1812531) Shewanella amazonensis SB2B 4603749 YP_927375.1 CDS Sama_1498 NC_008700.1 1812619 1814901 R KEGG: son:SO2912 formate acetyltransferase; formate C-acetyltransferase complement(1812619..1814901) Shewanella amazonensis SB2B 4603750 YP_927376.1 CDS Sama_1499 NC_008700.1 1815297 1816862 R KEGG: sdn:Sden_2405 hypothetical protein; hypothetical protein complement(1815297..1816862) Shewanella amazonensis SB2B 4603751 YP_927377.1 CDS Sama_1500 NC_008700.1 1817720 1819363 D KEGG: ppr:PBPRA2766 hypothetical formate transporter 1; formate transporter 1817720..1819363 Shewanella amazonensis SB2B 4603752 YP_927378.1 CDS Sama_1501 NC_008700.1 1819370 1820284 R KEGG: vch:VCA0542 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1819370..1820284) Shewanella amazonensis SB2B 4603753 YP_927379.1 CDS Sama_1502 NC_008700.1 1820620 1822182 D KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein 1820620..1822182 Shewanella amazonensis SB2B 4603754 YP_927380.1 CDS Sama_1503 NC_008700.1 1822416 1825115 R KEGG: vvy:VV0250 outer membrane receptor protein; outer membrane receptor protein complement(1822416..1825115) Shewanella amazonensis SB2B 4603755 YP_927381.1 CDS Sama_1504 NC_008700.1 1825652 1826662 R KEGG: son:SO2906 hypothetical protein; hypothetical protein complement(1825652..1826662) Shewanella amazonensis SB2B 4603756 YP_927382.1 CDS Sama_1505 NC_008700.1 1826766 1827845 R KEGG: son:SO2905 O-methyltransferase, putative; O-methyltransferase complement(1826766..1827845) Shewanella amazonensis SB2B 4603757 YP_927383.1 CDS Sama_1506 NC_008700.1 1828047 1830308 R KEGG: cps:CPS_0838 aminotransferase, class V; cysteine desulfurase complement(1828047..1830308) Shewanella amazonensis SB2B 4603758 YP_927384.1 CDS Sama_1507 NC_008700.1 1830583 1831245 D KEGG: psp:PSPPH_3872 transcriptional regulator, TetR family; TetR family transcriptional regulator 1830583..1831245 Shewanella amazonensis SB2B 4603759 YP_927385.1 CDS Sama_1508 NC_008700.1 1831345 1832313 R KEGG: son:SO2903 cysteine synthase A; cysteine synthase A complement(1831345..1832313) Shewanella amazonensis SB2B 4603760 YP_927386.1 CDS Sama_1509 NC_008700.1 1832524 1833651 D KEGG: son:SO2902 hypothetical protein; hypothetical protein 1832524..1833651 Shewanella amazonensis SB2B 4603761 YP_927387.1 CDS Sama_1510 NC_008700.1 1833648 1834772 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1833648..1834772 Shewanella amazonensis SB2B 4603762 YP_927388.1 CDS Sama_1511 NC_008700.1 1834784 1836034 D KEGG: sfr:Sfri_2466 diguanylate cyclase; response regulator receiver protein 1834784..1836034 Shewanella amazonensis SB2B 4603763 YP_927389.1 CDS Sama_1512 NC_008700.1 1836134 1838500 R KEGG: son:SO2900 hypothetical protein; hypothetical protein complement(1836134..1838500) Shewanella amazonensis SB2B 4603764 YP_927390.1 CDS Sama_1513 NC_008700.1 1838630 1839424 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(1838630..1839424) Shewanella amazonensis SB2B 4603765 YP_927391.1 CDS Sama_1514 NC_008700.1 1839719 1843138 D KEGG: son:SO2898 SMC family protein; SMC family protein 1839719..1843138 Shewanella amazonensis SB2B 4603766 YP_927392.1 CDS Sama_1515 NC_008700.1 1843162 1844214 D KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA 1843162..1844214 Shewanella amazonensis SB2B 4603767 YP_927393.1 CDS Sama_1516 NC_008700.1 1844244 1846289 D KEGG: son:SO2896 DNA ligase, NAD-dependent; DNA ligase (NAD(+)) 1844244..1846289 Shewanella amazonensis SB2B 4603768 YP_927394.1 CDS Sama_1517 NC_008700.1 1846415 1847356 D KEGG: cps:CPS_2237 microbial collagenase; collagenase 1846415..1847356 Shewanella amazonensis SB2B 4603769 YP_927395.1 CDS Sama_1518 NC_008700.1 1847479 1847970 D KEGG: son:SO2863 hypothetical protein; hypothetical protein 1847479..1847970 Shewanella amazonensis SB2B 4603770 YP_927396.1 CDS Sama_1519 NC_008700.1 1848494 1849708 D KEGG: son:SO2862 HDIG domain protein; putative metal dependent phosphohydrolase 1848494..1849708 Shewanella amazonensis SB2B 4603771 YP_927397.1 CDS Sama_1520 NC_008700.1 1849775 1850590 D KEGG: sdn:Sden_2511 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1849775..1850590 Shewanella amazonensis SB2B 4603772 YP_927398.1 CDS Sama_1521 NC_008700.1 1850669 1851226 D KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 1850669..1851226 Shewanella amazonensis SB2B 4603773 YP_927399.1 CDS Sama_1522 NC_008700.1 1851483 1851749 D KEGG: son:SO2858 hypothetical protein; hypothetical protein 1851483..1851749 Shewanella amazonensis SB2B 4603774 YP_927400.1 CDS Sama_1523 NC_008700.1 1851761 1853479 D KEGG: son:SO2857 sodium/solute symporter family protein; sodium/solute symporter family protein 1851761..1853479 Shewanella amazonensis SB2B 4603775 YP_927401.1 CDS Sama_1524 NC_008700.1 1853621 1855477 D KEGG: son:SO2856 CBS domain protein; hypothetical protein 1853621..1855477 Shewanella amazonensis SB2B 4603776 YP_927402.1 CDS Sama_1525 NC_008700.1 1855477 1856163 D KEGG: son:SO2855 exonuclease; DNA polymerase III subunit epsilon-like 3'-5' exonuclease 1855477..1856163 Shewanella amazonensis SB2B 4603777 YP_927403.1 CDS Sama_1526 NC_008700.1 1856248 1856838 D KEGG: son:SO2854 hypothetical protein; hypothetical protein 1856248..1856838 Shewanella amazonensis SB2B 4603778 YP_927404.1 CDS Sama_1527 NC_008700.1 1857000 1858064 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(1857000..1858064) Shewanella amazonensis SB2B 4603779 YP_927405.1 CDS Sama_1528 NC_008700.1 1858155 1858826 R KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1858155..1858826) Shewanella amazonensis SB2B 4603780 YP_927406.1 CDS Sama_1529 NC_008700.1 1858940 1860487 R KEGG: cps:CPS_1451 fatty aldehyde dehydrogenase; fatty aldehyde dehydrogenase complement(1858940..1860487) Shewanella amazonensis SB2B 4603781 YP_927407.1 CDS Sama_1530 NC_008700.1 1860524 1861525 R KEGG: hch:HCH_03167 proline racemase; hydroxyproline-2-epimerase complement(1860524..1861525) Shewanella amazonensis SB2B 4603782 YP_927408.1 CDS Sama_1531 NC_008700.1 1861570 1862484 R KEGG: cps:CPS_1449 dihydrodipicolinate synthetase family protein; dihydrodipicolinate synthetase family protein complement(1861570..1862484) Shewanella amazonensis SB2B 4603783 YP_927409.1 CDS Sama_1532 NC_008700.1 1862689 1863729 D KEGG: cps:CPS_1453 putative proline racemase; putative proline racemase 1862689..1863729 Shewanella amazonensis SB2B 4603784 YP_927410.1 CDS Sama_1533 NC_008700.1 1863740 1865026 D KEGG: cps:CPS_1447 putative D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase 1863740..1865026 Shewanella amazonensis SB2B 4603785 YP_927411.1 CDS Sama_1534 NC_008700.1 1865108 1866433 R KEGG: mca:MCA2770 xaa-pro aminopeptidase; xaa-pro aminopeptidase complement(1865108..1866433) Shewanella amazonensis SB2B 4603786 YP_927412.1 CDS Sama_1535 NC_008700.1 1866598 1867152 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1866598..1867152 Shewanella amazonensis SB2B 4603787 YP_927413.1 CDS Sama_1536 NC_008700.1 1873422 1873775 D KEGG: son:SO1940 hypothetical protein; hypothetical protein 1873422..1873775 Shewanella amazonensis SB2B 4605955 YP_927414.1 CDS Sama_1537 NC_008700.1 1873880 1874827 D KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 1873880..1874827 Shewanella amazonensis SB2B 4603789 YP_927415.1 CDS Sama_1538 NC_008700.1 1874831 1875136 R KEGG: ppr:PBPRA0237 hypothetical protein; hypothetical protein complement(1874831..1875136) Shewanella amazonensis SB2B 4603790 YP_927416.1 CDS Sama_1539 NC_008700.1 1875258 1876514 R KEGG: son:SO1942 HDIG domain protein; putative metal dependent phosphohydrolase complement(1875258..1876514) Shewanella amazonensis SB2B 4603791 YP_927417.1 CDS Sama_1540 NC_008700.1 1876627 1877319 D KEGG: son:SO1944 hypothetical protein; hypothetical protein 1876627..1877319 Shewanella amazonensis SB2B 4603792 YP_927418.1 CDS Sama_1541 NC_008700.1 1877346 1878698 R KEGG: son:SO1945 sensor protein PhoQ; sensor protein PhoQ complement(1877346..1878698) Shewanella amazonensis SB2B 4603793 YP_927419.1 CDS Sama_1542 NC_008700.1 1878698 1879372 R KEGG: son:SO1946 transcriptional regulatory protein PhoP; response regulator receiver protein complement(1878698..1879372) Shewanella amazonensis SB2B 4603794 YP_927420.1 CDS Sama_1543 NC_008700.1 1879547 1880401 D KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; putative phosphonate ABC transporter periplasmic phosphonate-binding protein 1879547..1880401 Shewanella amazonensis SB2B 4603795 YP_927421.1 CDS Sama_1544 NC_008700.1 1880404 1881081 D KEGG: sdn:Sden_1898 ABC transporter related; ABC transporter-like protein 1880404..1881081 Shewanella amazonensis SB2B 4603796 YP_927422.1 CDS Sama_1545 NC_008700.1 1881075 1882574 D KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1881075..1882574 Shewanella amazonensis SB2B 4603797 YP_927423.1 CDS Sama_1546 NC_008700.1 1882738 1883079 R KEGG: son:SO1947 hypothetical protein; hypothetical protein complement(1882738..1883079) Shewanella amazonensis SB2B 4603798 YP_927424.1 CDS Sama_1547 NC_008700.1 1883192 1883980 R hypothetical protein complement(1883192..1883980) Shewanella amazonensis SB2B 4603799 YP_927425.1 CDS Sama_1548 NC_008700.1 1884325 1885854 D KEGG: sdn:Sden_1365 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 1884325..1885854 Shewanella amazonensis SB2B 4603800 YP_927426.1 CDS Sama_1549 NC_008700.1 1885854 1887188 D KEGG: sdn:Sden_1366 sigma-54 factor, interaction region; response regulator receiver protein 1885854..1887188 Shewanella amazonensis SB2B 4603801 YP_927427.1 CDS Sama_1550 NC_008700.1 1887305 1887988 R KEGG: son:SO0765 threonine efflux protein, putative; threonine efflux protein complement(1887305..1887988) Shewanella amazonensis SB2B 4603802 YP_927428.1 CDS Sama_1551 NC_008700.1 1887992 1888819 R KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC/XylS family transcriptional regulator complement(1887992..1888819) Shewanella amazonensis SB2B 4603803 YP_927429.1 CDS nadE NC_008700.1 1888929 1889759 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1888929..1889759 Shewanella amazonensis SB2B 4603804 YP_927430.1 CDS Sama_1553 NC_008700.1 1889813 1891294 D KEGG: sdn:Sden_1434 hypothetical protein; hypothetical protein 1889813..1891294 Shewanella amazonensis SB2B 4603805 YP_927431.1 CDS Sama_1554 NC_008700.1 1891393 1893582 R KEGG: sdn:Sden_1435 GGDEF domain protein; diguanylate cyclase complement(1891393..1893582) Shewanella amazonensis SB2B 4603806 YP_927432.1 CDS Sama_1555 NC_008700.1 1894991 1896775 R KEGG: son:SO2175 hypothetical protein; hypothetical protein complement(1894991..1896775) Shewanella amazonensis SB2B 4605956 YP_927433.2 CDS Sama_1556 NC_008700.1 1896852 1897070 R KEGG: sdn:Sden_2336 protein of unknown function DUF1414; hypothetical protein complement(1896852..1897070) Shewanella amazonensis SB2B 4603808 YP_927434.1 CDS Sama_1557 NC_008700.1 1897148 1898176 D KEGG: sdn:Sden_2335 37kDa nucleoid-associated protein; nucleoid-associated protein NdpA 1897148..1898176 Shewanella amazonensis SB2B 4603809 YP_927435.1 CDS Sama_1558 NC_008700.1 1898352 1899065 R KEGG: hch:HCH_06888 hypothetical protein; hypothetical protein complement(1898352..1899065) Shewanella amazonensis SB2B 4603810 YP_927436.1 CDS Sama_1559 NC_008700.1 1899349 1900233 D KEGG: sdn:Sden_2379 hypothetical protein; hypothetical protein 1899349..1900233 Shewanella amazonensis SB2B 4603811 YP_927437.1 CDS Sama_1560 NC_008700.1 1900268 1901116 D KEGG: son:SO2180 peptidase, M23/M37 family; M24/M37 family peptidase 1900268..1901116 Shewanella amazonensis SB2B 4603812 YP_927438.1 CDS Sama_1561 NC_008700.1 1901287 1901733 D KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1901287..1901733 Shewanella amazonensis SB2B 4603813 YP_927439.1 CDS Sama_1562 NC_008700.1 1902081 1902584 R KEGG: vfi:VF1328 ferrichrome-binding protein; ferrichrome-binding protein complement(1902081..1902584) Shewanella amazonensis SB2B 4603814 YP_927440.1 CDS cpdB NC_008700.1 1903084 1905192 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(1903084..1905192) Shewanella amazonensis SB2B 4603815 YP_927441.1 CDS Sama_1564 NC_008700.1 1905406 1907598 R KEGG: sdn:Sden_1597 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp complement(1905406..1907598) Shewanella amazonensis SB2B 4603816 YP_927442.1 CDS Sama_1565 NC_008700.1 1907877 1909454 D KEGG: cps:CPS_1363 putative dipeptidase; hypothetical protein 1907877..1909454 Shewanella amazonensis SB2B 4603817 YP_927443.1 CDS Sama_1566 NC_008700.1 1909555 1911327 R KEGG: sdn:Sden_1655 gamma-glutamyltransferase; gamma-glutamyltransferase complement(1909555..1911327) Shewanella amazonensis SB2B 4603818 YP_927444.1 CDS Sama_1567 NC_008700.1 1911454 1912074 R KEGG: son:SO1954 transporter, LysE family; amino acid transporter LysE complement(1911454..1912074) Shewanella amazonensis SB2B 4603819 YP_927445.1 CDS Sama_1568 NC_008700.1 1912255 1913292 R KEGG: sdn:Sden_2163 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(1912255..1913292) Shewanella amazonensis SB2B 4603820 YP_927446.1 CDS Sama_1569 NC_008700.1 1913337 1914497 R KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase complement(1913337..1914497) Shewanella amazonensis SB2B 4603821 YP_927447.1 CDS Sama_1570 NC_008700.1 1914689 1915603 D KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 1914689..1915603 Shewanella amazonensis SB2B 4603822 YP_927448.1 CDS Sama_1571 NC_008700.1 1915710 1916504 D KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein 1915710..1916504 Shewanella amazonensis SB2B 4603823 YP_927449.1 CDS Sama_1572 NC_008700.1 1916605 1916964 R KEGG: son:SO1968 hypothetical protein; hypothetical protein complement(1916605..1916964) Shewanella amazonensis SB2B 4603824 YP_927450.1 CDS Sama_1573 NC_008700.1 1916997 1917467 R KEGG: son:SO1969 hypothetical protein; hypothetical protein complement(1916997..1917467) Shewanella amazonensis SB2B 4603825 YP_927451.1 CDS Sama_1574 NC_008700.1 1917664 1918443 D KEGG: son:SO1973 hypothetical ABC transporter protein; ABC transporter 1917664..1918443 Shewanella amazonensis SB2B 4603826 YP_927452.1 CDS Sama_1575 NC_008700.1 1918452 1918859 R KEGG: son:SO1977 hypothetical protein; hypothetical protein complement(1918452..1918859) Shewanella amazonensis SB2B 4603827 YP_927453.1 CDS Sama_1576 NC_008700.1 1919094 1920017 D KEGG: son:SO1978 hypothetical protein; hypothetical protein 1919094..1920017 Shewanella amazonensis SB2B 4603828 YP_927454.1 CDS Sama_1577 NC_008700.1 1920110 1920292 R KEGG: sdn:Sden_2145 hypothetical protein; hypothetical protein complement(1920110..1920292) Shewanella amazonensis SB2B 4603829 YP_927455.1 CDS Sama_1578 NC_008700.1 1920653 1922257 D KEGG: vvy:VVA1412 small-conductance mechanosensitive channel; small-conductance mechanosensitive channel 1920653..1922257 Shewanella amazonensis SB2B 4603830 YP_927456.1 CDS Sama_1579 NC_008700.1 1922416 1925031 R KEGG: sdn:Sden_1716 mammalian cell entry related; virulence factor MCE-like protein related complement(1922416..1925031) Shewanella amazonensis SB2B 4603831 YP_927457.1 CDS Sama_1580 NC_008700.1 1925018 1925647 R KEGG: sdn:Sden_1717 paraquat-inducible protein A; paraquat-inducible protein A complement(1925018..1925647) Shewanella amazonensis SB2B 4603832 YP_927458.1 CDS Sama_1581 NC_008700.1 1925640 1926287 R KEGG: sdn:Sden_1718 paraquat-inducible protein A; paraquat-inducible protein A complement(1925640..1926287) Shewanella amazonensis SB2B 4603833 YP_927459.1 CDS Sama_1582 NC_008700.1 1926443 1926730 D KEGG: son:SO2604 hypothetical protein; hypothetical protein 1926443..1926730 Shewanella amazonensis SB2B 4603834 YP_927460.1 CDS Sama_1583 NC_008700.1 1926749 1927210 D KEGG: sdn:Sden_1720 GAF domain-containing protein; GAF domain-containing protein 1926749..1927210 Shewanella amazonensis SB2B 4603835 YP_927461.1 CDS Sama_1584 NC_008700.1 1927464 1928123 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 1927464..1928123 Shewanella amazonensis SB2B 4603836 YP_927462.1 CDS Sama_1585 NC_008700.1 1928153 1930198 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1928153..1930198 Shewanella amazonensis SB2B 4603837 YP_927463.1 CDS pepN NC_008700.1 1930307 1932865 D KEGG: son:SO2600 aminopeptidase N; aminopeptidase N 1930307..1932865 Shewanella amazonensis SB2B 4603838 YP_927464.1 CDS Sama_1587 NC_008700.1 1932953 1933222 D KEGG: son:SO2598 hypothetical protein; hypothetical protein 1932953..1933222 Shewanella amazonensis SB2B 4603839 YP_927465.1 CDS Sama_1588 NC_008700.1 1933533 1935608 D KEGG: son:SO2597 hypothetical protein; hypothetical protein 1933533..1935608 Shewanella amazonensis SB2B 4603840 YP_927466.1 CDS Sama_1589 NC_008700.1 1935621 1936985 D KEGG: son:SO2596 hypothetical protein; hypothetical protein 1935621..1936985 Shewanella amazonensis SB2B 4603841 YP_927467.1 CDS Sama_1590 NC_008700.1 1937050 1938060 D KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 1937050..1938060 Shewanella amazonensis SB2B 4603842 YP_927468.1 CDS Sama_1591 NC_008700.1 1938098 1940404 D KEGG: son:SO2594 hypothetical protein; hypothetical protein 1938098..1940404 Shewanella amazonensis SB2B 4603843 YP_927469.1 CDS Sama_1592 NC_008700.1 1940681 1945522 D KEGG: son:SO2593 hypothetical protein; hypothetical protein 1940681..1945522 Shewanella amazonensis SB2B 4603844 YP_927470.1 CDS Sama_1593 NC_008700.1 1945662 1946681 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1945662..1946681 Shewanella amazonensis SB2B 4603845 YP_927471.1 CDS Sama_1594 NC_008700.1 1946862 1947395 D KEGG: son:SO2591 hypothetical protein; hypothetical protein 1946862..1947395 Shewanella amazonensis SB2B 4603846 YP_927472.1 CDS Sama_1595 NC_008700.1 1947572 1947811 D KEGG: sdn:Sden_0276 hypothetical protein; hypothetical protein 1947572..1947811 Shewanella amazonensis SB2B 4603847 YP_927473.1 CDS Sama_1596 NC_008700.1 1947839 1948735 D KEGG: son:SO2518 hypothetical protein; hypothetical protein 1947839..1948735 Shewanella amazonensis SB2B 4603848 YP_927474.1 CDS Sama_1597 NC_008700.1 1948886 1952014 D KEGG: vvy:VV1099 transglutaminase-like enzyme; hypothetical protein 1948886..1952014 Shewanella amazonensis SB2B 4603849 YP_927475.1 CDS Sama_1598 NC_008700.1 1952011 1952700 D KEGG: vpa:VP2146 putative oxidoreductase protein; putative oxidoreductase protein 1952011..1952700 Shewanella amazonensis SB2B 4603850 YP_927476.1 CDS Sama_1599 NC_008700.1 1952808 1953380 D KEGG: pat:Patl_0406 hypothetical protein; hypothetical protein 1952808..1953380 Shewanella amazonensis SB2B 4603851 YP_927477.1 CDS rlmL NC_008700.1 1954713 1956839 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1954713..1956839 Shewanella amazonensis SB2B 4605959 YP_927478.1 CDS Sama_1601 NC_008700.1 1956832 1957059 D KEGG: son:SO1852 hypothetical protein; hypothetical protein 1956832..1957059 Shewanella amazonensis SB2B 4603853 YP_927479.1 CDS Sama_1602 NC_008700.1 1957061 1958977 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1957061..1958977 Shewanella amazonensis SB2B 4603854 YP_927480.1 CDS Sama_1603 NC_008700.1 1959005 1960882 D KEGG: son:SO1854 hypothetical protein; hypothetical protein 1959005..1960882 Shewanella amazonensis SB2B 4603855 YP_927481.1 CDS Sama_1604 NC_008700.1 1961055 1961231 D KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor 1961055..1961231 Shewanella amazonensis SB2B 4603856 YP_927482.1 CDS Sama_1605 NC_008700.1 1961420 1961935 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1961420..1961935) Shewanella amazonensis SB2B 4603857 YP_927483.1 CDS Sama_1606 NC_008700.1 1962014 1963744 R KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease complement(1962014..1963744) Shewanella amazonensis SB2B 4603858 YP_927484.1 CDS Sama_1607 NC_008700.1 1964790 1965434 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1964790..1965434 Shewanella amazonensis SB2B 4605961 YP_927485.1 CDS uvrC NC_008700.1 1965437 1967257 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1965437..1967257 Shewanella amazonensis SB2B 4603860 YP_927486.1 CDS Sama_1609 NC_008700.1 1967306 1967854 D KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1967306..1967854 Shewanella amazonensis SB2B 4603861 YP_927487.1 CDS Sama_1610 NC_008700.1 1968633 1969796 D KEGG: noc:Noc_0649 DNA topoisomerase I; hypothetical protein 1968633..1969796 Shewanella amazonensis SB2B 4605964 YP_927488.1 CDS Sama_1611 NC_008700.1 1969782 1970057 R KEGG: son:SO1863 DNA-binding protein, HU family; HU family DNA-binding protein complement(1969782..1970057) Shewanella amazonensis SB2B 4603863 YP_927489.1 CDS Sama_1612 NC_008700.1 1970262 1971680 D KEGG: sdn:Sden_1501 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1970262..1971680 Shewanella amazonensis SB2B 4603864 YP_927490.1 CDS Sama_1613 NC_008700.1 1971884 1972375 D KEGG: son:SO2110 hypothetical protein; hypothetical protein 1971884..1972375 Shewanella amazonensis SB2B 4603865 YP_927491.1 CDS Sama_1614 NC_008700.1 1973022 1973309 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1973022..1973309 Shewanella amazonensis SB2B 4603866 YP_927492.1 CDS Sama_1615 NC_008700.1 1973505 1977398 R KEGG: son:SO2113 hypothetical protein; hypothetical protein complement(1973505..1977398) Shewanella amazonensis SB2B 4603867 YP_927493.1 CDS Sama_1616 NC_008700.1 1977395 1979233 R KEGG: son:SO2114 hypothetical protein; hypothetical protein complement(1977395..1979233) Shewanella amazonensis SB2B 4603868 YP_927494.1 CDS Sama_1617 NC_008700.1 1979427 1980410 D KEGG: son:SO2115 asparaginase family protein; asparaginase family protein 1979427..1980410 Shewanella amazonensis SB2B 4603869 YP_927495.1 CDS Sama_1618 NC_008700.1 1980496 1980912 D KEGG: son:SO2228 CBS domain protein; hypothetical protein 1980496..1980912 Shewanella amazonensis SB2B 4603870 YP_927496.1 CDS Sama_1619 NC_008700.1 1981026 1984895 D KEGG: son:SO2229 ATP-dependent helicase HrpA; ATP-dependent helicase HrpA 1981026..1984895 Shewanella amazonensis SB2B 4603871 YP_927497.1 CDS Sama_1620 NC_008700.1 1985317 1985502 D KEGG: sdn:Sden_1495 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 1985317..1985502 Shewanella amazonensis SB2B 4603872 YP_927498.1 CDS Sama_1621 NC_008700.1 1985600 1985803 D KEGG: sdn:Sden_1496 NapD; NapD protein 1985600..1985803 Shewanella amazonensis SB2B 4603873 YP_927499.1 CDS Sama_1622 NC_008700.1 1985800 1988295 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1985800..1988295 Shewanella amazonensis SB2B 4603874 YP_927500.1 CDS Sama_1623 NC_008700.1 1988307 1988780 D KEGG: sdn:Sden_1498 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 1988307..1988780 Shewanella amazonensis SB2B 4603875 YP_927501.1 CDS Sama_1624 NC_008700.1 1988789 1989376 D KEGG: sdn:Sden_1499 periplasmic nitrate reductase C-type cytochrome, NapC/NirT; periplasmic nitrate reductase C-type cytochrome, NapC/NirT 1988789..1989376 Shewanella amazonensis SB2B 4603876 YP_927502.1 CDS Sama_1625 NC_008700.1 1989511 1990314 R KEGG: sdn:Sden_1057 hypothetical protein; hypothetical protein complement(1989511..1990314) Shewanella amazonensis SB2B 4603877 YP_927503.1 CDS astD NC_008700.1 1990345 1991832 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(1990345..1991832) Shewanella amazonensis SB2B 4603878 YP_927504.2 CDS Sama_1627 NC_008700.1 1991829 1992875 R KEGG: sdn:Sden_1055 arginine N-succinyltransferase; arginine N-succinyltransferase complement(1991829..1992875) Shewanella amazonensis SB2B 4603879 YP_927505.1 CDS argD NC_008700.1 1992953 1994170 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(1992953..1994170) Shewanella amazonensis SB2B 4603880 YP_927506.1 CDS Sama_1629 NC_008700.1 1994324 1994752 D KEGG: sdn:Sden_1053 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1994324..1994752 Shewanella amazonensis SB2B 4603881 YP_927507.1 CDS Sama_1630 NC_008700.1 1994829 1995719 R KEGG: psp:PSPPH_4620 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1994829..1995719) Shewanella amazonensis SB2B 4603882 YP_927508.1 CDS Sama_1631 NC_008700.1 1995924 1997417 D KEGG: sru:SRU_0722 histidine ammonia-lyase; histidine ammonia-lyase 1995924..1997417 Shewanella amazonensis SB2B 4603883 YP_927509.1 CDS Sama_1632 NC_008700.1 1997435 1999447 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1997435..1999447 Shewanella amazonensis SB2B 4603884 YP_927510.1 CDS Sama_1633 NC_008700.1 1999827 2000741 R KEGG: son:SO2037 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase complement(1999827..2000741) Shewanella amazonensis SB2B 4603885 YP_927511.1 CDS Sama_1634 NC_008700.1 2001144 2001548 D hypothetical protein 2001144..2001548 Shewanella amazonensis SB2B 4603886 YP_927512.1 CDS Sama_1635 NC_008700.1 2002334 2003623 D hypothetical protein 2002334..2003623 Shewanella amazonensis SB2B 4603887 YP_927513.1 CDS Sama_1637 NC_008700.1 2004252 2004674 D KEGG: cps:CPS_4885 acetyltransferase, GNAT family; acetyltransferase 2004252..2004674 Shewanella amazonensis SB2B 4606038 YP_927514.1 CDS Sama_1638 NC_008700.1 2004831 2005097 R KEGG: sdn:Sden_2135 hypothetical protein; hypothetical protein complement(2004831..2005097) Shewanella amazonensis SB2B 4603889 YP_927515.1 CDS Sama_1639 NC_008700.1 2005097 2005834 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2005097..2005834) Shewanella amazonensis SB2B 4603890 YP_927516.1 CDS Sama_1640 NC_008700.1 2005890 2006960 R KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(2005890..2006960) Shewanella amazonensis SB2B 4603891 YP_927517.1 CDS Sama_1641 NC_008700.1 2006980 2008167 R KEGG: son:SO2476 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2006980..2008167) Shewanella amazonensis SB2B 4603892 YP_927518.1 CDS Sama_1642 NC_008700.1 2008318 2008929 R KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase complement(2008318..2008929) Shewanella amazonensis SB2B 4603893 YP_927519.1 CDS Sama_1643 NC_008700.1 2009088 2009501 R KEGG: sde:Sde_0340 hypothetical protein; hypothetical protein complement(2009088..2009501) Shewanella amazonensis SB2B 4603894 YP_927520.1 CDS Sama_1644 NC_008700.1 2009514 2010695 R KEGG: sde:Sde_0341 gram negative topoisomerase IV, subunit B; topoisomerase IV subunit B complement(2009514..2010695) Shewanella amazonensis SB2B 4603895 YP_927521.1 CDS Sama_1645 NC_008700.1 2010833 2011660 R KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(2010833..2011660) Shewanella amazonensis SB2B 4603896 YP_927522.1 CDS Sama_1646 NC_008700.1 2011653 2012291 R KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; D-alanyl-D-alanine carboxypeptidase complement(2011653..2012291) Shewanella amazonensis SB2B 4603897 YP_927523.1 CDS Sama_1647 NC_008700.1 2012345 2013493 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2012345..2013493) Shewanella amazonensis SB2B 4603898 YP_927524.1 CDS Sama_1648 NC_008700.1 2013490 2013834 R KEGG: sdn:Sden_1815 hypothetical protein; hypothetical protein complement(2013490..2013834) Shewanella amazonensis SB2B 4603899 YP_927525.1 CDS Sama_1649 NC_008700.1 2013924 2014433 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(2013924..2014433) Shewanella amazonensis SB2B 4603900 YP_927526.1 CDS Sama_1650 NC_008700.1 2014505 2016208 R KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphotransferase system, enzyme I complement(2014505..2016208) Shewanella amazonensis SB2B 4603901 YP_927527.1 CDS Sama_1651 NC_008700.1 2016223 2016480 R KEGG: son:SO2238 phosphocarrier protein HPr; phosphocarrier protein HPr complement(2016223..2016480) Shewanella amazonensis SB2B 4603902 YP_927528.1 CDS Sama_1652 NC_008700.1 2016545 2016943 R KEGG: son:SO2239 hypothetical protein; hypothetical protein complement(2016545..2016943) Shewanella amazonensis SB2B 4603903 YP_927529.1 CDS Sama_1653 NC_008700.1 2017088 2018704 R KEGG: son:SO2240 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(2017088..2018704) Shewanella amazonensis SB2B 4603904 YP_927530.1 CDS Sama_1654 NC_008700.1 2019007 2019693 D KEGG: son:SO2241 hypothetical protein; hypothetical protein 2019007..2019693 Shewanella amazonensis SB2B 4603905 YP_927531.1 CDS Sama_1655 NC_008700.1 2019731 2020831 D KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcriptional regulator 2019731..2020831 Shewanella amazonensis SB2B 4603906 YP_927532.1 CDS Sama_1656 NC_008700.1 2021005 2023458 R KEGG: son:SO2459 glucoamylase; glucan 1,4-alpha-glucosidase complement(2021005..2023458) Shewanella amazonensis SB2B 4603907 YP_927533.1 CDS Sama_1657 NC_008700.1 2023478 2025034 R KEGG: she:Shewmr4_1870 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2023478..2025034) Shewanella amazonensis SB2B 4603908 YP_927534.1 CDS Sama_1658 NC_008700.1 2025446 2026105 D KEGG: pat:Patl_2431 negative transcriptional regulator; negative transcriptional regulator 2025446..2026105 Shewanella amazonensis SB2B 4603909 YP_927535.1 CDS Sama_1659 NC_008700.1 2026284 2028164 R KEGG: pha:PSHAa1355 glycosidase; glycosidase complement(2026284..2028164) Shewanella amazonensis SB2B 4603910 YP_927536.1 CDS Sama_1660 NC_008700.1 2028170 2030221 R KEGG: sdn:Sden_2031 alpha amylase, catalytic region; alpha amylase complement(2028170..2030221) Shewanella amazonensis SB2B 4603911 YP_927537.1 CDS Sama_1661 NC_008700.1 2030305 2033127 R KEGG: son:SO2162 TonB dependent receptor-related protein; TonB dependent receptor-like protein complement(2030305..2033127) Shewanella amazonensis SB2B 4603912 YP_927538.1 CDS Sama_1662 NC_008700.1 2033633 2035267 D KEGG: sdn:Sden_2028 alpha amylase, catalytic region; alpha amylase 2033633..2035267 Shewanella amazonensis SB2B 4603913 YP_927539.1 CDS Sama_1663 NC_008700.1 2035563 2036810 D KEGG: sdn:Sden_2027 glucose/galactose transporter; glucose/galactose transporter 2035563..2036810 Shewanella amazonensis SB2B 4603914 YP_927540.1 CDS Sama_1664 NC_008700.1 2037123 2038373 D KEGG: vvy:VVA1664 tRNA and rRNA cytosine-C5-methylase; tRNA and rRNA cytosine-C5-methylase 2037123..2038373 Shewanella amazonensis SB2B 4603915 YP_927541.1 CDS Sama_1665 NC_008700.1 2038527 2038946 R KEGG: vvu:VV11395 hypothetical protein; hypothetical protein complement(2038527..2038946) Shewanella amazonensis SB2B 4603916 YP_927542.1 CDS Sama_1666 NC_008700.1 2039062 2039340 D KEGG: sde:Sde_2637 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 2039062..2039340 Shewanella amazonensis SB2B 4603917 YP_927543.1 CDS Sama_1667 NC_008700.1 2039343 2041145 D KEGG: vpa:VPA0700 hypothetical protein; hypothetical protein 2039343..2041145 Shewanella amazonensis SB2B 4603918 YP_927544.1 CDS Sama_1668 NC_008700.1 2041211 2042281 R KEGG: vvy:VV2684 GGDEF family protein; diguanylate cyclase complement(2041211..2042281) Shewanella amazonensis SB2B 4603919 YP_927545.1 CDS Sama_1669 NC_008700.1 2042513 2042878 R KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase expression/formation protein HypA complement(2042513..2042878) Shewanella amazonensis SB2B 4603920 YP_927546.1 CDS Sama_1670 NC_008700.1 2042878 2043882 R KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2042878..2043882) Shewanella amazonensis SB2B 4603921 YP_927547.1 CDS Sama_1671 NC_008700.1 2043872 2045032 R KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2043872..2045032) Shewanella amazonensis SB2B 4603922 YP_927548.1 CDS Sama_1672 NC_008700.1 2045010 2045270 R KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF complement(2045010..2045270) Shewanella amazonensis SB2B 4603923 YP_927549.1 CDS Sama_1673 NC_008700.1 2045274 2046050 R KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2045274..2046050) Shewanella amazonensis SB2B 4603924 YP_927550.1 CDS Sama_1674 NC_008700.1 2046154 2048469 R KEGG: son:SO2094 hydrogenase maturation protein HypF; hydrogenase maturation protein HypF complement(2046154..2048469) Shewanella amazonensis SB2B 4603925 YP_927551.1 CDS Sama_1675 NC_008700.1 2048499 2050307 R KEGG: son:SO2095 hypothetical protein; hypothetical protein complement(2048499..2050307) Shewanella amazonensis SB2B 4603926 YP_927552.1 CDS Sama_1676 NC_008700.1 2050294 2050851 R KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2050294..2050851) Shewanella amazonensis SB2B 4603927 YP_927553.1 CDS Sama_1677 NC_008700.1 2051003 2051719 R KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; quinone-reactive Ni/Fe hydrogenase, cytochrome subunit B complement(2051003..2051719) Shewanella amazonensis SB2B 4603928 YP_927554.1 CDS Sama_1678 NC_008700.1 2051729 2053432 R KEGG: son:SO2098 hydrogenase large chain; hydrogenase large chain complement(2051729..2053432) Shewanella amazonensis SB2B 4603929 YP_927555.1 CDS Sama_1679 NC_008700.1 2053436 2054572 R KEGG: son:SO2099 hydrogenase small chain; hydrogen:quinone oxidoreductase complement(2053436..2054572) Shewanella amazonensis SB2B 4603930 YP_927556.1 CDS Sama_1680 NC_008700.1 2054905 2055426 D KEGG: son:SO2100 thioredoxin family protein; thioredoxin family protein 2054905..2055426 Shewanella amazonensis SB2B 4603931 YP_927557.1 CDS Sama_1681 NC_008700.1 2055423 2055644 D KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 2055423..2055644 Shewanella amazonensis SB2B 4603932 YP_927558.1 CDS Sama_1682 NC_008700.1 2055635 2057056 D KEGG: son:SO2102 hypothetical protein; hypothetical protein 2055635..2057056 Shewanella amazonensis SB2B 4603933 YP_927559.1 CDS Sama_1683 NC_008700.1 2057082 2057996 D KEGG: she:Shewmr4_1826 ApbE family lipoprotein; ApbE family lipoprotein 2057082..2057996 Shewanella amazonensis SB2B 4603934 YP_927560.1 CDS asnC NC_008700.1 2058084 2059484 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2058084..2059484) Shewanella amazonensis SB2B 4603935 YP_927561.1 CDS Sama_1685 NC_008700.1 2059635 2059970 D KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein 2059635..2059970 Shewanella amazonensis SB2B 4603936 YP_927562.1 CDS Sama_1686 NC_008700.1 2060046 2060654 R KEGG: son:SO2220 MutT/nudix family protein; MutT/nudix family protein complement(2060046..2060654) Shewanella amazonensis SB2B 4603937 YP_927563.1 CDS Sama_1687 NC_008700.1 2060661 2062076 R KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase, component I complement(2060661..2062076) Shewanella amazonensis SB2B 4603938 YP_927564.1 CDS Sama_1688 NC_008700.1 2062237 2063772 D KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; fumarate hydratase, class I, anaerobic 2062237..2063772 Shewanella amazonensis SB2B 4603939 YP_927565.1 CDS Sama_1689 NC_008700.1 2063943 2065997 D KEGG: son:SO2223 peptidase, putative; peptidase 2063943..2065997 Shewanella amazonensis SB2B 4603940 YP_927566.1 CDS Sama_1690 NC_008700.1 2066090 2066767 D KEGG: pat:Patl_1146 hypothetical protein; hypothetical protein 2066090..2066767 Shewanella amazonensis SB2B 4603941 YP_927567.1 CDS mdoG NC_008700.1 2067034 2068656 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2067034..2068656 Shewanella amazonensis SB2B 4603942 YP_927568.1 CDS Sama_1692 NC_008700.1 2068718 2070841 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2068718..2070841 Shewanella amazonensis SB2B 4603943 YP_927569.1 CDS Sama_1693 NC_008700.1 2070919 2073522 R KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2070919..2073522) Shewanella amazonensis SB2B 4603944 YP_927570.1 CDS Sama_1694 NC_008700.1 2073858 2074490 D KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2073858..2074490 Shewanella amazonensis SB2B 4603945 YP_927571.1 CDS Sama_1695 NC_008700.1 2074604 2075935 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2074604..2075935) Shewanella amazonensis SB2B 4603946 YP_927572.1 CDS Sama_1696 NC_008700.1 2075945 2076532 R KEGG: son:SO2484 hypothetical protein; hypothetical protein complement(2075945..2076532) Shewanella amazonensis SB2B 4603947 YP_927573.1 CDS Sama_1697 NC_008700.1 2076712 2077926 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2076712..2077926) Shewanella amazonensis SB2B 4603948 YP_927574.1 CDS Sama_1698 NC_008700.1 2078569 2079951 D KEGG: son:SO2481 hypothetical protein; hypothetical protein 2078569..2079951 Shewanella amazonensis SB2B 4603949 YP_927575.1 CDS Sama_1699 NC_008700.1 2080349 2080915 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2080349..2080915) Shewanella amazonensis SB2B 4603950 YP_927576.1 CDS Sama_1700 NC_008700.1 2080955 2082121 R KEGG: son:SO2329 hypothetical protein; hypothetical protein complement(2080955..2082121) Shewanella amazonensis SB2B 4603951 YP_927577.1 CDS Sama_1701 NC_008700.1 2082200 2082727 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2082200..2082727) Shewanella amazonensis SB2B 4603952 YP_927578.1 CDS Sama_1702 NC_008700.1 2082781 2083053 R KEGG: son:SO2331 hypothetical protein; LexA regulated protein complement(2082781..2083053) Shewanella amazonensis SB2B 4603953 YP_927579.1 CDS Sama_1703 NC_008700.1 2083061 2083282 R KEGG: son:SO2332 hypothetical protein; hypothetical protein complement(2083061..2083282) Shewanella amazonensis SB2B 4603954 YP_927580.1 CDS Sama_1704 NC_008700.1 2083379 2084167 R KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase complement(2083379..2084167) Shewanella amazonensis SB2B 4603955 YP_927581.1 CDS Sama_1705 NC_008700.1 2084434 2085009 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2084434..2085009 Shewanella amazonensis SB2B 4603956 YP_927582.1 CDS Sama_1706 NC_008700.1 2085048 2086730 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2085048..2086730 Shewanella amazonensis SB2B 4603957 YP_927583.1 CDS Sama_1707 NC_008700.1 2086791 2087285 R KEGG: son:SO2337 peptide methionine sulfoxide reductase; protein-methionine-S-oxide reductase complement(2086791..2087285) Shewanella amazonensis SB2B 4603958 YP_927584.1 CDS Sama_1708 NC_008700.1 2087535 2088581 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2087535..2088581 Shewanella amazonensis SB2B 4603959 YP_927585.1 CDS Sama_1709 NC_008700.1 2088734 2089912 D KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2088734..2089912 Shewanella amazonensis SB2B 4603960 YP_927586.1 CDS Sama_1710 NC_008700.1 2089916 2090893 D KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; alpha keto acid dehydrogenase complex, E1 component subunit beta 2089916..2090893 Shewanella amazonensis SB2B 4603961 YP_927587.1 CDS Sama_1711 NC_008700.1 2090903 2092486 D KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase 2090903..2092486 Shewanella amazonensis SB2B 4603962 YP_927588.1 CDS Sama_1712 NC_008700.1 2092642 2093709 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2092642..2093709 Shewanella amazonensis SB2B 4603963 YP_927589.1 CDS Sama_1713 NC_008700.1 2093877 2095877 D KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2093877..2095877 Shewanella amazonensis SB2B 4603964 YP_927590.1 CDS Sama_1715 NC_008700.1 2097037 2098110 D KEGG: vfi:VFA0358 acriflavin resistance periplasmic protein; acriflavin resistance periplasmic protein 2097037..2098110 Shewanella amazonensis SB2B 4606039 YP_927591.1 CDS Sama_1716 NC_008700.1 2098110 2101154 D KEGG: vvy:VVA0535 transporter, AcrB/D/F family; AcrB/AcrD/AcrF family transporter 2098110..2101154 Shewanella amazonensis SB2B 4603966 YP_927592.1 CDS Sama_1717 NC_008700.1 2101773 2103560 D KEGG: son:SO2570 lipoprotein, putative; putative lipoprotein 2101773..2103560 Shewanella amazonensis SB2B 4603967 YP_927593.1 CDS Sama_1718 NC_008700.1 2103739 2104413 D KEGG: son:SO2426 DNA-binding response regulator; response regulator receiver protein 2103739..2104413 Shewanella amazonensis SB2B 4603968 YP_927594.1 CDS Sama_1719 NC_008700.1 2104525 2105652 D KEGG: son:SO2424 zinc carboxypeptidase domain protein; zinc carboxypeptidase domain-containing protein 2104525..2105652 Shewanella amazonensis SB2B 4603969 YP_927595.1 CDS Sama_1720 NC_008700.1 2105658 2105975 D KEGG: son:SO2423 hypothetical protein; hypothetical protein 2105658..2105975 Shewanella amazonensis SB2B 4603970 YP_927596.1 CDS Sama_1721 NC_008700.1 2105972 2106265 D KEGG: son:SO2422 hypothetical protein; hypothetical protein 2105972..2106265 Shewanella amazonensis SB2B 4603971 YP_927597.1 CDS ansA NC_008700.1 2106320 2107333 R converts asparagine to aspartate and ammonia; asparaginase complement(2106320..2107333) Shewanella amazonensis SB2B 4603972 YP_927598.1 CDS Sama_1723 NC_008700.1 2107498 2109351 R KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type complement(2107498..2109351) Shewanella amazonensis SB2B 4603973 YP_927599.1 CDS Sama_1724 NC_008700.1 2109514 2111529 D KEGG: sdn:Sden_1900 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2109514..2111529 Shewanella amazonensis SB2B 4603974 YP_927600.1 CDS Sama_1725 NC_008700.1 2111730 2112254 D KEGG: mxa:MXAN_5255 hypothetical protein; hypothetical protein 2111730..2112254 Shewanella amazonensis SB2B 4603975 YP_927601.1 CDS Sama_1726 NC_008700.1 2112256 2112609 R KEGG: son:SO2417 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(2112256..2112609) Shewanella amazonensis SB2B 4603976 YP_927602.1 CDS nrdB NC_008700.1 2112584 2113759 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(2112584..2113759) Shewanella amazonensis SB2B 4603977 YP_927603.1 CDS Sama_1728 NC_008700.1 2113784 2116132 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2113784..2116132) Shewanella amazonensis SB2B 4603978 YP_927604.1 CDS Sama_1729 NC_008700.1 2116488 2117129 R KEGG: son:SO2414 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(2116488..2117129) Shewanella amazonensis SB2B 4603979 YP_927605.1 CDS Sama_1730 NC_008700.1 2117140 2117853 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2117140..2117853) Shewanella amazonensis SB2B 4603980 YP_927606.1 CDS Sama_1731 NC_008700.1 2118311 2121016 D KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A 2118311..2121016 Shewanella amazonensis SB2B 4603981 YP_927607.1 CDS Sama_1732 NC_008700.1 2121128 2122222 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2121128..2122222 Shewanella amazonensis SB2B 4603982 YP_927608.1 CDS Sama_1733 NC_008700.1 2122290 2123480 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2122290..2123480) Shewanella amazonensis SB2B 4603983 YP_927609.1 CDS Sama_1734 NC_008700.1 2123951 2125237 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2123951..2125237 Shewanella amazonensis SB2B 4603984 YP_927610.1 CDS cmk NC_008700.1 2125389 2126084 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2125389..2126084 Shewanella amazonensis SB2B 4603985 YP_927611.1 CDS rpsA NC_008700.1 2126185 2127852 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2126185..2127852 Shewanella amazonensis SB2B 4603986 YP_927612.1 CDS ihfB NC_008700.1 2127929 2128216 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2127929..2128216 Shewanella amazonensis SB2B 4603987 YP_927613.1 CDS Sama_1738 NC_008700.1 2128299 2128640 D KEGG: son:SO2400 hypothetical protein; membrane protein 2128299..2128640 Shewanella amazonensis SB2B 4603988 YP_927614.1 CDS Sama_1739 NC_008700.1 2128642 2129802 D KEGG: son:SO2399 hypothetical protein; hypothetical protein 2128642..2129802 Shewanella amazonensis SB2B 4603989 YP_927615.1 CDS Sama_1740 NC_008700.1 2129830 2130531 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2129830..2130531 Shewanella amazonensis SB2B 4603990 YP_927616.1 CDS Sama_1741 NC_008700.1 2130596 2131414 D KEGG: sdn:Sden_1758 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2130596..2131414 Shewanella amazonensis SB2B 4603991 YP_927617.1 CDS Sama_1742 NC_008700.1 2131491 2132036 D KEGG: son:SO2396 hypothetical protein; hypothetical protein 2131491..2132036 Shewanella amazonensis SB2B 4603992 YP_927618.1 CDS Sama_1743 NC_008700.1 2132170 2133906 D KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase family protein 2132170..2133906 Shewanella amazonensis SB2B 4603993 YP_927619.1 CDS Sama_1744 NC_008700.1 2134055 2135719 R KEGG: son:SO2394 penicillin-binding protein 4; serine-type D-Ala-D-Ala carboxypeptidase complement(2134055..2135719) Shewanella amazonensis SB2B 4603994 YP_927620.1 CDS Sama_1745 NC_008700.1 2135793 2135978 R KEGG: son:SO2393 hypothetical protein; hypothetical protein complement(2135793..2135978) Shewanella amazonensis SB2B 4603995 YP_927621.1 CDS Sama_1746 NC_008700.1 2136187 2136513 D KEGG: vpa:VP0563 hypothetical protein; hypothetical protein 2136187..2136513 Shewanella amazonensis SB2B 4603996 YP_927622.1 CDS pssA NC_008700.1 2136525 2137838 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2136525..2137838 Shewanella amazonensis SB2B 4603997 YP_927623.1 CDS Sama_1748 NC_008700.1 2138020 2138778 D KEGG: sdn:Sden_1780 hypothetical protein; hypothetical protein 2138020..2138778 Shewanella amazonensis SB2B 4603998 YP_927624.1 CDS Sama_1749 NC_008700.1 2139025 2141085 R KEGG: sdn:Sden_2951 protein of unknown function DUF839; hypothetical protein complement(2139025..2141085) Shewanella amazonensis SB2B 4605966 YP_927625.1 CDS Sama_1750 NC_008700.1 2141242 2141571 D KEGG: sdn:Sden_1781 putative orphan protein; hypothetical protein 2141242..2141571 Shewanella amazonensis SB2B 4604000 YP_927626.1 CDS Sama_1751 NC_008700.1 2141641 2142552 R KEGG: pha:PSHAa1736 hypothetical protein; hypothetical protein complement(2141641..2142552) Shewanella amazonensis SB2B 4604001 YP_927627.1 CDS Sama_1752 NC_008700.1 2142976 2144568 R KEGG: pha:PSHAa0289 hypothetical protein; hypothetical protein complement(2142976..2144568) Shewanella amazonensis SB2B 4604002 YP_927628.1 CDS Sama_1753 NC_008700.1 2144606 2145283 R member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase complement(2144606..2145283) Shewanella amazonensis SB2B 4604003 YP_927629.1 CDS Sama_1754 NC_008700.1 2145540 2146097 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2145540..2146097) Shewanella amazonensis SB2B 4604004 YP_927630.1 CDS Sama_1755 NC_008700.1 2146324 2147421 D KEGG: son:SO2045 cation efflux family protein; cation efflux family protein 2146324..2147421 Shewanella amazonensis SB2B 4604005 YP_927631.1 CDS Sama_1756 NC_008700.1 2147502 2147930 D KEGG: dde:Dde_2977 transcriptional regulator, MarR family; MarR family transcriptional regulator 2147502..2147930 Shewanella amazonensis SB2B 4604006 YP_927632.1 CDS Sama_1757 NC_008700.1 2148076 2150166 D KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 2148076..2150166 Shewanella amazonensis SB2B 4604007 YP_927633.1 CDS Sama_1758 NC_008700.1 2150332 2151948 D KEGG: son:SO2048 membrane protein, putative; hypothetical protein 2150332..2151948 Shewanella amazonensis SB2B 4604008 YP_927634.1 CDS Sama_1759 NC_008700.1 2151993 2153060 D KEGG: sdn:Sden_1878 GGDEF domain protein; diguanylate cyclase 2151993..2153060 Shewanella amazonensis SB2B 4604009 YP_927635.1 CDS Sama_1760 NC_008700.1 2153130 2155865 R KEGG: son:SO2116 acetyltransferase, GNAT family; acetyltransferase complement(2153130..2155865) Shewanella amazonensis SB2B 4604010 YP_927636.1 CDS Sama_1761 NC_008700.1 2156410 2157771 R KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein complement(2156410..2157771) Shewanella amazonensis SB2B 4605968 YP_927637.1 CDS Sama_1762 NC_008700.1 2157797 2158405 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2157797..2158405 Shewanella amazonensis SB2B 4604012 YP_927638.1 CDS Sama_1763 NC_008700.1 2158399 2158599 R KEGG: son:SO2297 hypothetical protein; hypothetical protein complement(2158399..2158599) Shewanella amazonensis SB2B 4604013 YP_927639.1 CDS Sama_1764 NC_008700.1 2158599 2159357 R KEGG: pat:Patl_2501 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2158599..2159357) Shewanella amazonensis SB2B 4604014 YP_927640.1 CDS Sama_1765 NC_008700.1 2159575 2161503 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2159575..2161503 Shewanella amazonensis SB2B 4604015 YP_927641.1 CDS Sama_1766 NC_008700.1 2161594 2162046 D KEGG: son:SO2300 translation initiation factor IF-3; translation initiation factor IF-3 2161594..2162046 Shewanella amazonensis SB2B 4604016 YP_927642.1 CDS rpmI NC_008700.1 2162135 2162329 D KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 2162135..2162329 Shewanella amazonensis SB2B 4604017 YP_927643.1 CDS rplT NC_008700.1 2162346 2162705 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2162346..2162705 Shewanella amazonensis SB2B 4604018 YP_927644.1 CDS Sama_1769 NC_008700.1 2162836 2163789 R KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase complement(2162836..2163789) Shewanella amazonensis SB2B 4604019 YP_927645.1 CDS Sama_1770 NC_008700.1 2163974 2165086 R KEGG: sdn:Sden_1741 alanine dehydrogenase; alanine dehydrogenase complement(2163974..2165086) Shewanella amazonensis SB2B 4604020 YP_927646.1 CDS Sama_1771 NC_008700.1 2165266 2165769 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2165266..2165769 Shewanella amazonensis SB2B 4604021 YP_927647.1 CDS Sama_1772 NC_008700.1 2165958 2168744 D KEGG: son:SO2306 cell division protein FtsK, putative; cell division protein FtsK 2165958..2168744 Shewanella amazonensis SB2B 4604022 YP_927648.1 CDS Sama_1773 NC_008700.1 2168820 2169431 D KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2168820..2169431 Shewanella amazonensis SB2B 4604023 YP_927649.1 CDS Sama_1774 NC_008700.1 2169443 2170771 D KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2169443..2170771 Shewanella amazonensis SB2B 4604024 YP_927650.1 CDS Sama_1775 NC_008700.1 2170764 2171138 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2170764..2171138 Shewanella amazonensis SB2B 4604025 YP_927651.1 CDS Sama_1776 NC_008700.1 2171156 2172442 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2171156..2172442 Shewanella amazonensis SB2B 4604026 YP_927652.1 CDS Sama_1777 NC_008700.1 2172470 2172589 D KEGG: shm:Shewmr7_2008 hypothetical protein; hypothetical protein 2172470..2172589 Shewanella amazonensis SB2B 4604027 YP_927653.1 CDS Sama_1778 NC_008700.1 2172646 2172984 R KEGG: sdn:Sden_1805 DsrC-like protein; DsrC-like protein complement(2172646..2172984) Shewanella amazonensis SB2B 4604028 YP_927654.1 CDS Sama_1779 NC_008700.1 2172978 2173271 R KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein complement(2172978..2173271) Shewanella amazonensis SB2B 4604029 YP_927655.1 CDS Sama_1780 NC_008700.1 2173271 2173627 R KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein complement(2173271..2173627) Shewanella amazonensis SB2B 4604030 YP_927656.1 CDS Sama_1781 NC_008700.1 2173637 2174056 R KEGG: son:SO2376 DsrE-related protein; DsrE-like protein complement(2173637..2174056) Shewanella amazonensis SB2B 4604031 YP_927657.1 CDS Sama_1782 NC_008700.1 2174080 2174736 R KEGG: son:SO2375 membrane protein, putative; hypothetical protein complement(2174080..2174736) Shewanella amazonensis SB2B 4604032 YP_927658.1 CDS Sama_1783 NC_008700.1 2174802 2175704 R KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2174802..2175704) Shewanella amazonensis SB2B 4604033 YP_927659.1 CDS Sama_1784 NC_008700.1 2175843 2177144 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2175843..2177144 Shewanella amazonensis SB2B 4604034 YP_927660.1 CDS Sama_1785 NC_008700.1 2177393 2177797 R KEGG: cps:CPS_1915 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2177393..2177797) Shewanella amazonensis SB2B 4604035 YP_927661.1 CDS Sama_1786 NC_008700.1 2177808 2180177 R KEGG: cps:CPS_1916 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(2177808..2180177) Shewanella amazonensis SB2B 4604036 YP_927662.1 CDS Sama_1787 NC_008700.1 2180338 2180574 D KEGG: rso:RSc3349 hypothetical protein; hypothetical protein 2180338..2180574 Shewanella amazonensis SB2B 4604037 YP_927663.1 CDS Sama_1788 NC_008700.1 2181147 2181476 R KEGG: sdn:Sden_1854 hypothetical protein; hypothetical protein complement(2181147..2181476) Shewanella amazonensis SB2B 4604038 YP_927664.1 CDS Sama_1789 NC_008700.1 2181634 2183208 D KEGG: son:SO2366 response regulator; response regulator receiver protein 2181634..2183208 Shewanella amazonensis SB2B 4604039 YP_927665.1 CDS Sama_1790 NC_008700.1 2183211 2183663 R KEGG: son:SO2365 hypothetical protein; hypothetical protein complement(2183211..2183663) Shewanella amazonensis SB2B 4604040 YP_927666.1 CDS Sama_1791 NC_008700.1 2183928 2185364 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2183928..2185364 Shewanella amazonensis SB2B 4604041 YP_927667.1 CDS Sama_1792 NC_008700.1 2185377 2185982 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2185377..2185982 Shewanella amazonensis SB2B 4604042 YP_927668.1 CDS Sama_1793 NC_008700.1 2185995 2186168 D KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 2185995..2186168 Shewanella amazonensis SB2B 4604043 YP_927669.1 CDS Sama_1794 NC_008700.1 2186168 2187145 D KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2186168..2187145 Shewanella amazonensis SB2B 4604044 YP_927670.1 CDS Sama_1795 NC_008700.1 2187258 2187737 D KEGG: son:SO2360 hypothetical protein; hypothetical protein 2187258..2187737 Shewanella amazonensis SB2B 4604045 YP_927671.1 CDS Sama_1796 NC_008700.1 2187745 2190132 D KEGG: son:SO2359 cation transport ATPase, E1-E2 family; cation transporter E1-E2 family ATPase 2187745..2190132 Shewanella amazonensis SB2B 4604046 YP_927672.1 CDS Sama_1797 NC_008700.1 2190129 2190329 D KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; hypothetical protein 2190129..2190329 Shewanella amazonensis SB2B 4604047 YP_927673.1 CDS Sama_1798 NC_008700.1 2190329 2191021 D KEGG: son:SO2357 hypothetical protein; hypothetical protein 2190329..2191021 Shewanella amazonensis SB2B 4604048 YP_927674.1 CDS Sama_1799 NC_008700.1 2191078 2191830 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2191078..2191830 Shewanella amazonensis SB2B 4604049 YP_927675.1 CDS Sama_1800 NC_008700.1 2191915 2192847 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2191915..2192847 Shewanella amazonensis SB2B 4604050 YP_927676.1 CDS Sama_1801 NC_008700.1 2192916 2193875 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2192916..2193875 Shewanella amazonensis SB2B 4604051 YP_927677.1 CDS Sama_1802 NC_008700.1 2193985 2194581 R KEGG: son:SO2353 hypothetical protein; hypothetical protein complement(2193985..2194581) Shewanella amazonensis SB2B 4604052 YP_927678.1 CDS Sama_1803 NC_008700.1 2194523 2195395 R KEGG: son:SO2352 bax protein, putative; bax protein complement(2194523..2195395) Shewanella amazonensis SB2B 4604053 YP_927679.1 CDS Sama_1804 NC_008700.1 2195616 2196524 D KEGG: son:SO2351 hypothetical protein; hypothetical protein 2195616..2196524 Shewanella amazonensis SB2B 4604054 YP_927680.1 CDS Sama_1805 NC_008700.1 2196597 2197790 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2196597..2197790) Shewanella amazonensis SB2B 4604055 YP_927681.1 CDS Sama_1806 NC_008700.1 2198300 2199739 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(2198300..2199739) Shewanella amazonensis SB2B 4605970 YP_927682.1 CDS Sama_1807 NC_008700.1 2199962 2200831 D KEGG: son:SO2346 hypothetical protein; hypothetical protein 2199962..2200831 Shewanella amazonensis SB2B 4604057 YP_927683.1 CDS Sama_1808 NC_008700.1 2200983 2201996 D KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 2200983..2201996 Shewanella amazonensis SB2B 4604058 YP_927684.1 CDS Sama_1809 NC_008700.1 2202354 2202998 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2202354..2202998) Shewanella amazonensis SB2B 4604059 YP_927685.1 CDS Sama_1810 NC_008700.1 2203018 2204844 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2203018..2204844) Shewanella amazonensis SB2B 4604060 YP_927686.1 CDS Sama_1811 NC_008700.1 2204856 2205554 R KEGG: shm:Shewmr7_1930 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(2204856..2205554) Shewanella amazonensis SB2B 4604061 YP_927687.1 CDS Sama_1812 NC_008700.1 2205565 2207037 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2205565..2207037) Shewanella amazonensis SB2B 4604062 YP_927688.1 CDS Sama_1813 NC_008700.1 2207350 2208204 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2207350..2208204 Shewanella amazonensis SB2B 4604063 YP_927689.1 CDS Sama_1814 NC_008700.1 2208391 2209830 D KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 2208391..2209830 Shewanella amazonensis SB2B 4604064 YP_927690.1 CDS Sama_1815 NC_008700.1 2210044 2212323 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2210044..2212323) Shewanella amazonensis SB2B 4604065 YP_927691.1 CDS Sama_1816 NC_008700.1 2212338 2213024 R KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2212338..2213024) Shewanella amazonensis SB2B 4604066 YP_927692.1 CDS Sama_1817 NC_008700.1 2213192 2215048 D KEGG: sfr:Sfri_1887 peptidyl-dipeptidase A; peptidyl-dipeptidase A 2213192..2215048 Shewanella amazonensis SB2B 4604067 YP_927693.1 CDS Sama_1818 NC_008700.1 2215257 2215913 R KEGG: son:SO2495 Smr domain protein; Smr domain-containing protein complement(2215257..2215913) Shewanella amazonensis SB2B 4604068 YP_927694.1 CDS Sama_1819 NC_008700.1 2215956 2216519 D KEGG: son:SO2495.1 hypothetical protein; hypothetical protein 2215956..2216519 Shewanella amazonensis SB2B 4604069 YP_927695.1 CDS Sama_1820 NC_008700.1 2216550 2217011 D KEGG: sdn:Sden_2119 metal-binding protein; metal-binding protein 2216550..2217011 Shewanella amazonensis SB2B 4604070 YP_927696.1 CDS Sama_1821 NC_008700.1 2217047 2219224 R KEGG: son:SO2498 sensory box protein; putative diguanylate phosphodiesterase complement(2217047..2219224) Shewanella amazonensis SB2B 4604071 YP_927697.1 CDS Sama_1822 NC_008700.1 2219360 2219647 R KEGG: son:SO2499 hypothetical protein; hypothetical protein complement(2219360..2219647) Shewanella amazonensis SB2B 4604072 YP_927698.1 CDS Sama_1823 NC_008700.1 2219742 2220254 R KEGG: sdn:Sden_2012 hypothetical protein; hypothetical protein complement(2219742..2220254) Shewanella amazonensis SB2B 4604073 YP_927699.1 CDS Sama_1824 NC_008700.1 2220855 2221925 D KEGG: sdn:Sden_2013 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 2220855..2221925 Shewanella amazonensis SB2B 4605973 YP_927700.1 CDS Sama_1825 NC_008700.1 2222001 2222702 R KEGG: sdn:Sden_2014 radical activating enzyme; radical activating enzyme complement(2222001..2222702) Shewanella amazonensis SB2B 4604075 YP_927701.1 CDS Sama_1826 NC_008700.1 2222863 2223555 D KEGG: son:SO2503 ExsB protein; ExsB protein 2222863..2223555 Shewanella amazonensis SB2B 4604076 YP_927702.1 CDS Sama_1827 NC_008700.1 2223552 2224169 D KEGG: son:SO2504 hypothetical protein; hypothetical protein 2223552..2224169 Shewanella amazonensis SB2B 4604077 YP_927703.1 CDS Sama_1828 NC_008700.1 2224267 2226285 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2224267..2226285) Shewanella amazonensis SB2B 4604078 YP_927704.1 CDS Sama_1829 NC_008700.1 2227669 2229609 D KEGG: son:SO2507 GGDEF domain protein protein; putative diguanylate phosphodiesterase 2227669..2229609 Shewanella amazonensis SB2B 4605978 YP_927705.1 CDS Sama_1830 NC_008700.1 2229685 2230263 D KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2229685..2230263 Shewanella amazonensis SB2B 4604080 YP_927706.1 CDS Sama_1831 NC_008700.1 2230263 2230832 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2230263..2230832 Shewanella amazonensis SB2B 4604081 YP_927707.1 CDS Sama_1832 NC_008700.1 2230826 2233468 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2230826..2233468 Shewanella amazonensis SB2B 4604082 YP_927708.1 CDS rnfD NC_008700.1 2233471 2234517 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2233471..2234517 Shewanella amazonensis SB2B 4604083 YP_927709.1 CDS Sama_1834 NC_008700.1 2234527 2235174 D KEGG: son:SO2512 electron transport complex protein RnfG; electron transport complex protein RnfG 2234527..2235174 Shewanella amazonensis SB2B 4604084 YP_927710.1 CDS Sama_1835 NC_008700.1 2235167 2235865 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2235167..2235865 Shewanella amazonensis SB2B 4604085 YP_927711.1 CDS Sama_1836 NC_008700.1 2235897 2236538 D KEGG: son:SO2514 endonuclease III; endonuclease III 2235897..2236538 Shewanella amazonensis SB2B 4604086 YP_927712.1 CDS Sama_1837 NC_008700.1 2236858 2237268 D KEGG: son:SO2044 lactoylglutathione lyase; lactoylglutathione lyase 2236858..2237268 Shewanella amazonensis SB2B 4604087 YP_927713.1 CDS Sama_1838 NC_008700.1 2237370 2239889 R KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor complement(2237370..2239889) Shewanella amazonensis SB2B 4604088 YP_927714.1 CDS ruvB NC_008700.1 2240347 2241351 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2240347..2241351) Shewanella amazonensis SB2B 4604089 YP_927715.1 CDS ruvA NC_008700.1 2241369 2241986 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2241369..2241986) Shewanella amazonensis SB2B 4604090 YP_927716.1 CDS ruvC NC_008700.1 2241983 2242504 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2241983..2242504) Shewanella amazonensis SB2B 4604091 YP_927717.1 CDS Sama_1842 NC_008700.1 2242508 2243254 R KEGG: sdn:Sden_1886 protein of unknown function DUF28; hypothetical protein complement(2242508..2243254) Shewanella amazonensis SB2B 4604092 YP_927718.1 CDS aspS NC_008700.1 2243378 2245153 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2243378..2245153) Shewanella amazonensis SB2B 4604093 YP_927719.1 CDS Sama_1844 NC_008700.1 2245344 2248142 R KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein protein; extracellular solute-binding protein complement(2245344..2248142) Shewanella amazonensis SB2B 4604094 YP_927720.1 CDS Sama_1845 NC_008700.1 2248292 2249023 D KEGG: son:SO2435 methyltransferase, putative; methyltransferase 2248292..2249023 Shewanella amazonensis SB2B 4604095 YP_927721.1 CDS Sama_1846 NC_008700.1 2249020 2250012 D KEGG: son:SO2436 methyltransferase, putative; methyltransferase 2249020..2250012 Shewanella amazonensis SB2B 4604096 YP_927722.1 CDS Sama_1847 NC_008700.1 2250047 2250766 D KEGG: sdn:Sden_1891 protein of unknown function DUF785; hypothetical protein 2250047..2250766 Shewanella amazonensis SB2B 4604097 YP_927723.1 CDS Sama_1848 NC_008700.1 2250793 2252295 D KEGG: sdn:Sden_1892 gonadoliberin III-related protein; gonadoliberin III-like protein 2250793..2252295 Shewanella amazonensis SB2B 4604098 YP_927724.1 CDS Sama_1849 NC_008700.1 2252297 2253253 D KEGG: sdn:Sden_1893 alpha-L-glutamate ligase-related protein; alpha-L-glutamate ligase-like protein 2252297..2253253 Shewanella amazonensis SB2B 4604099 YP_927725.1 CDS Sama_1850 NC_008700.1 2253216 2254880 D KEGG: son:SO2437 hypothetical protein; hypothetical protein 2253216..2254880 Shewanella amazonensis SB2B 4604100 YP_927726.1 CDS Sama_1851 NC_008700.1 2254867 2256027 D KEGG: sdn:Sden_1895 hypothetical protein; hypothetical protein 2254867..2256027 Shewanella amazonensis SB2B 4604101 YP_927727.1 CDS Sama_1852 NC_008700.1 2256261 2257166 D KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2256261..2257166 Shewanella amazonensis SB2B 4604102 YP_927728.1 CDS Sama_1853 NC_008700.1 2257149 2258933 R KEGG: son:SO2439 SrpA-related protein; hypothetical protein complement(2257149..2258933) Shewanella amazonensis SB2B 4604103 YP_927729.1 CDS Sama_1854 NC_008700.1 2258939 2259190 R KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(2258939..2259190) Shewanella amazonensis SB2B 4604104 YP_927730.1 CDS thiH NC_008700.1 2259305 2260420 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2259305..2260420) Shewanella amazonensis SB2B 4604105 YP_927731.1 CDS thiG NC_008700.1 2260417 2261232 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2260417..2261232) Shewanella amazonensis SB2B 4604106 YP_927732.1 CDS Sama_1857 NC_008700.1 2261234 2261437 R KEGG: sdn:Sden_1773 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(2261234..2261437) Shewanella amazonensis SB2B 4604107 YP_927733.1 CDS Sama_1858 NC_008700.1 2261431 2262183 R KEGG: son:SO2443 thiF protein, putative; thiF protein complement(2261431..2262183) Shewanella amazonensis SB2B 4604108 YP_927734.1 CDS Sama_1859 NC_008700.1 2262173 2263750 R KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase complement(2262173..2263750) Shewanella amazonensis SB2B 4604109 YP_927735.1 CDS Sama_1860 NC_008700.1 2263751 2265745 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2263751..2265745) Shewanella amazonensis SB2B 4604110 YP_927736.1 CDS Sama_1861 NC_008700.1 2266129 2267208 R KEGG: she:Shewmr4_1880 hypothetical protein; hypothetical protein complement(2266129..2267208) Shewanella amazonensis SB2B 4604111 YP_927737.1 CDS Sama_1862 NC_008700.1 2267774 2268499 D KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein 2267774..2268499 Shewanella amazonensis SB2B 4604112 YP_927738.1 CDS Sama_1863 NC_008700.1 2268654 2271746 R KEGG: vpa:VP2036 putative DNA polymerase III alpha chain; DNA-directed DNA polymerase complement(2268654..2271746) Shewanella amazonensis SB2B 4604113 YP_927739.1 CDS Sama_1864 NC_008700.1 2271746 2274037 R KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; hypothetical protein complement(2271746..2274037) Shewanella amazonensis SB2B 4604114 YP_927740.1 CDS Sama_1865 NC_008700.1 2274199 2274894 R KEGG: pat:Patl_0036 hypothetical protein; hypothetical protein complement(2274199..2274894) Shewanella amazonensis SB2B 4604115 YP_927741.1 CDS Sama_1866 NC_008700.1 2275054 2276460 D KEGG: vpa:VPA0149 putative two-component system sensor kinase; putative two-component system sensor kinase 2275054..2276460 Shewanella amazonensis SB2B 4604116 YP_927742.1 CDS Sama_1867 NC_008700.1 2276496 2276837 D KEGG: sdn:Sden_1767 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2276496..2276837 Shewanella amazonensis SB2B 4604117 YP_927743.1 CDS Sama_1868 NC_008700.1 2276852 2277583 D KEGG: son:SO2533 hypothetical protein; hypothetical protein 2276852..2277583 Shewanella amazonensis SB2B 4604118 YP_927744.1 CDS Sama_1869 NC_008700.1 2277659 2278468 R KEGG: son:SO2535 hypothetical amidotransferase; amidotransferase complement(2277659..2278468) Shewanella amazonensis SB2B 4604119 YP_927745.1 CDS fadE NC_008700.1 2278706 2281153 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2278706..2281153 Shewanella amazonensis SB2B 4604120 YP_927746.1 CDS Sama_1871 NC_008700.1 2281277 2283277 R KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger family protein complement(2281277..2283277) Shewanella amazonensis SB2B 4604121 YP_927747.1 CDS Sama_1872 NC_008700.1 2283634 2286774 D KEGG: mxa:MXAN_6150 sensor histidine kinase; sensor histidine kinase 2283634..2286774 Shewanella amazonensis SB2B 4604122 YP_927748.1 CDS Sama_1873 NC_008700.1 2286764 2287411 D KEGG: mxa:MXAN_6149 DNA-binding response regulator, LuxR family; response regulator receiver protein 2286764..2287411 Shewanella amazonensis SB2B 4604123 YP_927749.1 CDS Sama_1874 NC_008700.1 2288016 2288636 D hypothetical protein 2288016..2288636 Shewanella amazonensis SB2B 4604124 YP_927750.1 CDS Sama_1875 NC_008700.1 2288636 2291083 D hypothetical protein 2288636..2291083 Shewanella amazonensis SB2B 4604125 YP_927751.1 CDS Sama_1876 NC_008700.1 2291278 2293101 D KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2291278..2293101 Shewanella amazonensis SB2B 4604126 YP_927752.1 CDS Sama_1877 NC_008700.1 2293225 2293503 D KEGG: abo:ABO_2082 transposase, putative; transposase 2293225..2293503 Shewanella amazonensis SB2B 4604127 YP_927753.1 CDS Sama_1878 NC_008700.1 2293542 2294381 D KEGG: son:SOA0129 transposase, IS3 family; IS3 family transposase 2293542..2294381 Shewanella amazonensis SB2B 4604128 YP_927754.1 CDS Sama_1879 NC_008700.1 2294720 2296039 R KEGG: son:SO2557 hypothetical protein; hypothetical protein complement(2294720..2296039) Shewanella amazonensis SB2B 4605979 YP_927755.1 CDS Sama_1880 NC_008700.1 2296021 2296749 R KEGG: son:SO2559 DNA polymerase III, epsilon subunit; DNA-directed DNA polymerase complement(2296021..2296749) Shewanella amazonensis SB2B 4604130 YP_927756.1 CDS rnhA NC_008700.1 2296821 2297291 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2296821..2297291 Shewanella amazonensis SB2B 4604131 YP_927757.1 CDS Sama_1882 NC_008700.1 2297333 2298241 R KEGG: son:SO2561 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2297333..2298241) Shewanella amazonensis SB2B 4604132 YP_927758.1 CDS Sama_1883 NC_008700.1 2298238 2298960 R KEGG: son:SO2562 hypothetical protein; hypothetical protein complement(2298238..2298960) Shewanella amazonensis SB2B 4604133 YP_927759.1 CDS Sama_1884 NC_008700.1 2299143 2299919 D KEGG: bbr:BB4280 probable hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2299143..2299919 Shewanella amazonensis SB2B 4604134 YP_927760.1 CDS Sama_1885 NC_008700.1 2300052 2301539 D KEGG: son:SO2564 transglycosylase, Slt family; Slt family transglycosylase 2300052..2301539 Shewanella amazonensis SB2B 4604135 YP_927761.1 CDS Sama_1886 NC_008700.1 2302018 2302545 R KEGG: sdn:Sden_2023 intracellular proteinase inhibitor domain protein; hypothetical protein complement(2302018..2302545) Shewanella amazonensis SB2B 4604136 YP_927762.1 CDS Sama_1887 NC_008700.1 2302542 2304356 R KEGG: son:SO2566 AsmA protein; AsmA protein complement(2302542..2304356) Shewanella amazonensis SB2B 4604137 YP_927763.1 CDS Sama_1888 NC_008700.1 2304369 2304863 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2304369..2304863) Shewanella amazonensis SB2B 4604138 YP_927764.1 CDS Sama_1889 NC_008700.1 2305038 2305358 D KEGG: son:SO2569 hypothetical protein; hypothetical protein 2305038..2305358 Shewanella amazonensis SB2B 4604139 YP_927765.1 CDS Sama_1890 NC_008700.1 2305835 2306821 D KEGG: vvy:VV2031 hypothetical protein; hypothetical protein 2305835..2306821 Shewanella amazonensis SB2B 4604140 YP_927766.1 CDS Sama_1891 NC_008700.1 2306830 2308137 D KEGG: vch:VC1370 GGDEF family protein; diguanylate cyclase 2306830..2308137 Shewanella amazonensis SB2B 4604141 YP_927767.1 CDS Sama_1892 NC_008700.1 2308090 2308716 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(2308090..2308716) Shewanella amazonensis SB2B 4604142 YP_927768.1 CDS Sama_1893 NC_008700.1 2308716 2309720 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(2308716..2309720) Shewanella amazonensis SB2B 4604143 YP_927769.1 CDS Sama_1894 NC_008700.1 2309910 2311472 D KEGG: son:SO2041 hypothetical protein; hypothetical protein 2309910..2311472 Shewanella amazonensis SB2B 4604144 YP_927770.1 CDS Sama_1895 NC_008700.1 2311492 2313408 D KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; soluble lytic murein transglycosylase 2311492..2313408 Shewanella amazonensis SB2B 4604145 YP_927771.1 CDS Sama_1896 NC_008700.1 2313636 2314424 D KEGG: son:SO2039 hypothetical protein; putative diguanylate phosphodiesterase 2313636..2314424 Shewanella amazonensis SB2B 4604146 YP_927772.1 CDS Sama_1897 NC_008700.1 2314457 2315386 D KEGG: son:SO2153 MoxR protein; MoxR protein 2314457..2315386 Shewanella amazonensis SB2B 4604147 YP_927773.1 CDS Sama_1898 NC_008700.1 2315386 2316414 D KEGG: son:SO2151 hypothetical protein; hypothetical protein 2315386..2316414 Shewanella amazonensis SB2B 4604148 YP_927774.1 CDS Sama_1899 NC_008700.1 2316415 2318484 D KEGG: son:SO2150 transglutaminase family protein; transglutaminase family protein 2316415..2318484 Shewanella amazonensis SB2B 4604149 YP_927775.1 CDS Sama_1900 NC_008700.1 2318577 2322068 D KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2318577..2322068 Shewanella amazonensis SB2B 4604150 YP_927776.1 CDS Sama_1901 NC_008700.1 2322070 2325744 D KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2322070..2325744 Shewanella amazonensis SB2B 4604151 YP_927777.1 CDS Sama_1902 NC_008700.1 2325741 2327636 D KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V 2325741..2327636 Shewanella amazonensis SB2B 4604152 YP_927778.1 CDS ddl NC_008700.1 2327736 2328746 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2327736..2328746 Shewanella amazonensis SB2B 4604153 YP_927779.1 CDS Sama_1904 NC_008700.1 2329003 2330724 D activates fatty acids by binding to coenzyme A; AMP-binding protein 2329003..2330724 Shewanella amazonensis SB2B 4604154 YP_927780.1 CDS Sama_1905 NC_008700.1 2330816 2333920 R KEGG: son:SO1882 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein complement(2330816..2333920) Shewanella amazonensis SB2B 4604155 YP_927781.1 CDS Sama_1906 NC_008700.1 2333917 2335002 R KEGG: son:SO1881 HlyD family-related protein; HlyD family-like protein complement(2333917..2335002) Shewanella amazonensis SB2B 4604156 YP_927782.1 CDS Sama_1907 NC_008700.1 2335388 2336452 R KEGG: son:SO1880 lipoprotein-34 NlpB; lipoprotein-34 NlpB complement(2335388..2336452) Shewanella amazonensis SB2B 4604157 YP_927783.1 CDS Sama_1908 NC_008700.1 2336495 2337376 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2336495..2337376) Shewanella amazonensis SB2B 4604158 YP_927784.1 CDS Sama_1909 NC_008700.1 2337549 2338076 D KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2337549..2338076 Shewanella amazonensis SB2B 4604159 YP_927785.1 CDS bcp NC_008700.1 2338103 2338567 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2338103..2338567 Shewanella amazonensis SB2B 4604160 YP_927786.1 CDS Sama_1911 NC_008700.1 2338667 2339785 R KEGG: sdn:Sden_1649 protein of unknown function UPF0118; hypothetical protein complement(2338667..2339785) Shewanella amazonensis SB2B 4604161 YP_927787.1 CDS Sama_1912 NC_008700.1 2339843 2340073 R KEGG: son:SO2868 hypothetical protein; hypothetical protein complement(2339843..2340073) Shewanella amazonensis SB2B 4604162 YP_927788.1 CDS Sama_1913 NC_008700.1 2340177 2341646 D KEGG: she:Shewmr4_2347 peptidase M48, Ste24p; peptidase M48, Ste24p 2340177..2341646 Shewanella amazonensis SB2B 4604163 YP_927789.1 CDS Sama_1914 NC_008700.1 2341739 2342089 D KEGG: sdn:Sden_1646 arsenate reductase; arsenate reductase 2341739..2342089 Shewanella amazonensis SB2B 4604164 YP_927790.1 CDS Sama_1915 NC_008700.1 2342098 2342490 D KEGG: son:SO2872 hypothetical protein; hypothetical protein 2342098..2342490 Shewanella amazonensis SB2B 4604165 YP_927791.1 CDS Sama_1916 NC_008700.1 2342655 2343380 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2342655..2343380) Shewanella amazonensis SB2B 4604166 YP_927792.1 CDS Sama_1917 NC_008700.1 2343453 2344607 R KEGG: son:SO2878 hypothetical protein; hypothetical protein complement(2343453..2344607) Shewanella amazonensis SB2B 4604167 YP_927793.1 CDS Sama_1918 NC_008700.1 2344815 2346044 D KEGG: sdn:Sden_1641 uracil-xanthine permease; uracil-xanthine permease 2344815..2346044 Shewanella amazonensis SB2B 4604168 YP_927794.1 CDS Sama_1919 NC_008700.1 2346156 2346488 R KEGG: sdn:Sden_1640 glutaredoxin-related protein; glutaredoxin-like protein complement(2346156..2346488) Shewanella amazonensis SB2B 4604169 YP_927795.1 CDS Sama_1920 NC_008700.1 2346731 2347315 D KEGG: son:SO2881 superoxide dismutase, Fe; superoxide dismutase 2346731..2347315 Shewanella amazonensis SB2B 4604170 YP_927796.1 CDS Sama_1921 NC_008700.1 2347569 2349503 D KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA 2347569..2349503 Shewanella amazonensis SB2B 4604171 YP_927797.1 CDS Sama_1922 NC_008700.1 2349555 2350826 D KEGG: son:SO2883 hypothetical protein; hypothetical protein 2349555..2350826 Shewanella amazonensis SB2B 4604172 YP_927798.1 CDS Sama_1923 NC_008700.1 2350836 2352359 D KEGG: son:SO2884 hypothetical protein; SpoVR family protein 2350836..2352359 Shewanella amazonensis SB2B 4604173 YP_927799.1 CDS Sama_1924 NC_008700.1 2352404 2353126 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(2352404..2353126) Shewanella amazonensis SB2B 4604174 YP_927800.1 CDS nhaB NC_008700.1 2353434 2355020 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2353434..2355020 Shewanella amazonensis SB2B 4604175 YP_927801.1 CDS Sama_1926 NC_008700.1 2355121 2355630 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2355121..2355630 Shewanella amazonensis SB2B 4604176 YP_927802.1 CDS Sama_1927 NC_008700.1 2355706 2356146 R KEGG: sdn:Sden_1632 uncharacterized conserved protein UCP006173; hypothetical protein complement(2355706..2356146) Shewanella amazonensis SB2B 4604177 YP_927803.1 CDS Sama_1928 NC_008700.1 2356191 2357186 R KEGG: sdn:Sden_1631 membrane-bound lytic murein transglycosylase B; membrane-bound lytic murein transglycosylase B complement(2356191..2357186) Shewanella amazonensis SB2B 4604178 YP_927804.1 CDS Sama_1929 NC_008700.1 2357226 2357504 R KEGG: sdn:Sden_1630 protein of unknown function DUF709; hypothetical protein complement(2357226..2357504) Shewanella amazonensis SB2B 4604179 YP_927805.1 CDS minC NC_008700.1 2357627 2358301 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2357627..2358301 Shewanella amazonensis SB2B 4604180 YP_927806.1 CDS Sama_1931 NC_008700.1 2358331 2359140 D KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD 2358331..2359140 Shewanella amazonensis SB2B 4604181 YP_927807.1 CDS Sama_1932 NC_008700.1 2359143 2359400 D KEGG: son:SO2578 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2359143..2359400 Shewanella amazonensis SB2B 4604182 YP_927808.1 CDS Sama_1933 NC_008700.1 2359614 2360729 R KEGG: son:SO2580 ribonuclease D; ribonuclease D complement(2359614..2360729) Shewanella amazonensis SB2B 4604183 YP_927809.1 CDS Sama_1934 NC_008700.1 2360791 2362467 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2360791..2362467) Shewanella amazonensis SB2B 4604184 YP_927810.1 CDS Sama_1935 NC_008700.1 2362640 2363575 R KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase complement(2362640..2363575) Shewanella amazonensis SB2B 4604185 YP_927811.1 CDS Sama_1936 NC_008700.1 2363746 2364576 R KEGG: son:SO2583 hypothetical protein; hypothetical protein complement(2363746..2364576) Shewanella amazonensis SB2B 4604186 YP_927812.1 CDS Sama_1937 NC_008700.1 2364640 2365350 R KEGG: son:SO2584 hypothetical protein; hypothetical protein complement(2364640..2365350) Shewanella amazonensis SB2B 4604187 YP_927813.1 CDS Sama_1938 NC_008700.1 2365343 2365636 R hypothetical protein complement(2365343..2365636) Shewanella amazonensis SB2B 4604188 YP_927814.1 CDS Sama_1939 NC_008700.1 2365654 2366364 R KEGG: son:SO2586 hypothetical protein; hypothetical protein complement(2365654..2366364) Shewanella amazonensis SB2B 4604189 YP_927815.1 CDS Sama_1940 NC_008700.1 2366483 2368480 R KEGG: son:SO2081 ATP-dependent helicase, DinG family; ATP-dependent helicase DinG complement(2366483..2368480) Shewanella amazonensis SB2B 4604190 YP_927816.1 CDS hisG NC_008700.1 2368941 2369834 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2368941..2369834 Shewanella amazonensis SB2B 4604191 YP_927817.1 CDS hisD NC_008700.1 2369838 2371145 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2369838..2371145 Shewanella amazonensis SB2B 4604192 YP_927818.1 CDS Sama_1943 NC_008700.1 2371142 2372230 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2371142..2372230 Shewanella amazonensis SB2B 4604193 YP_927819.1 CDS Sama_1944 NC_008700.1 2372250 2373317 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2372250..2373317 Shewanella amazonensis SB2B 4604194 YP_927820.1 CDS hisH NC_008700.1 2373317 2374030 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2373317..2374030 Shewanella amazonensis SB2B 4604195 YP_927821.1 CDS Sama_1946 NC_008700.1 2374027 2374764 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2374027..2374764 Shewanella amazonensis SB2B 4604196 YP_927822.1 CDS Sama_1947 NC_008700.1 2374746 2375525 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2374746..2375525 Shewanella amazonensis SB2B 4604197 YP_927823.1 CDS Sama_1948 NC_008700.1 2375532 2376158 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2375532..2376158 Shewanella amazonensis SB2B 4604198 YP_927824.1 CDS Sama_1949 NC_008700.1 2376276 2377259 R KEGG: pfl:PFL_3308 diguanylate cyclase, putative; diguanylate cyclase complement(2376276..2377259) Shewanella amazonensis SB2B 4604199 YP_927825.1 CDS Sama_1950 NC_008700.1 2377316 2378242 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2377316..2378242) Shewanella amazonensis SB2B 4604200 YP_927826.1 CDS ihfA NC_008700.1 2378324 2378620 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2378324..2378620) Shewanella amazonensis SB2B 4604201 YP_927827.1 CDS pheT NC_008700.1 2378624 2381011 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2378624..2381011) Shewanella amazonensis SB2B 4604202 YP_927828.1 CDS pheS NC_008700.1 2381027 2382010 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2381027..2382010) Shewanella amazonensis SB2B 4604203 YP_927829.1 CDS Sama_1954 NC_008700.1 2382430 2383944 D KEGG: sdn:Sden_1601 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 2382430..2383944 Shewanella amazonensis SB2B 4604204 YP_927830.1 CDS Sama_1955 NC_008700.1 2384062 2386611 D KEGG: son:SO2889 sensory box histidine kinase; sensory box histidine kinase 2384062..2386611 Shewanella amazonensis SB2B 4604205 YP_927831.1 CDS Sama_1956 NC_008700.1 2386608 2387477 R KEGG: sdn:Sden_2273 protein of unknown function DUF785; hypothetical protein complement(2386608..2387477) Shewanella amazonensis SB2B 4604206 YP_927832.1 CDS Sama_1957 NC_008700.1 2387582 2387950 R KEGG: son:SO2890 hypothetical protein; hypothetical protein complement(2387582..2387950) Shewanella amazonensis SB2B 4604207 YP_927833.1 CDS Sama_1958 NC_008700.1 2387986 2388336 R KEGG: son:SO2891 hypothetical protein; hypothetical protein complement(2387986..2388336) Shewanella amazonensis SB2B 4604208 YP_927834.1 CDS Sama_1959 NC_008700.1 2388430 2389005 R KEGG: son:SO2893 hypothetical protein; hypothetical protein complement(2388430..2389005) Shewanella amazonensis SB2B 4604209 YP_927835.1 CDS Sama_1960 NC_008700.1 2389189 2389401 D KEGG: plt:Plut_0244 putative cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 2389189..2389401 Shewanella amazonensis SB2B 4604210 YP_927836.1 CDS Sama_1961 NC_008700.1 2389402 2390040 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(2389402..2390040) Shewanella amazonensis SB2B 4604211 YP_927837.1 CDS Sama_1962 NC_008700.1 2390319 2391248 R KEGG: sdn:Sden_2279 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase complement(2390319..2391248) Shewanella amazonensis SB2B 4604212 YP_927838.1 CDS Sama_1963 NC_008700.1 2391322 2393232 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(2391322..2393232) Shewanella amazonensis SB2B 4604213 YP_927839.1 CDS Sama_1964 NC_008700.1 2393261 2394136 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(2393261..2394136) Shewanella amazonensis SB2B 4604214 YP_927840.1 CDS Sama_1965 NC_008700.1 2394242 2394385 R KEGG: shm:Shewmr7_1631 hypothetical protein; hypothetical protein complement(2394242..2394385) Shewanella amazonensis SB2B 4604215 YP_927841.1 CDS Sama_1966 NC_008700.1 2394886 2395716 D KEGG: son:SO1868 hypothetical protein; hypothetical protein 2394886..2395716 Shewanella amazonensis SB2B 4604216 YP_927842.1 CDS Sama_1967 NC_008700.1 2395839 2396471 D KEGG: son:SO1867 hypothetical protein; hypothetical protein 2395839..2396471 Shewanella amazonensis SB2B 4604217 YP_927843.1 CDS Sama_1968 NC_008700.1 2396494 2397333 D KEGG: sdn:Sden_2283 hypothetical protein; hypothetical protein 2396494..2397333 Shewanella amazonensis SB2B 4604218 YP_927844.1 CDS Sama_1969 NC_008700.1 2397330 2398235 D KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 2397330..2398235 Shewanella amazonensis SB2B 4604219 YP_927845.1 CDS Sama_1970 NC_008700.1 2398716 2398925 R KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding domain-containing protein complement(2398716..2398925) Shewanella amazonensis SB2B 4604220 YP_927846.1 CDS rrmA NC_008700.1 2399213 2400052 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(2399213..2400052) Shewanella amazonensis SB2B 4604221 YP_927847.1 CDS Sama_1972 NC_008700.1 2400052 2400954 R KEGG: son:SO2789 hypothetical protein; hypothetical protein complement(2400052..2400954) Shewanella amazonensis SB2B 4604222 YP_927848.1 CDS sbcB NC_008700.1 2401157 2402569 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2401157..2402569 Shewanella amazonensis SB2B 4604223 YP_927849.1 CDS Sama_1974 NC_008700.1 2402667 2403557 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2402667..2403557 Shewanella amazonensis SB2B 4604224 YP_927850.1 CDS Sama_1975 NC_008700.1 2403659 2404534 R KEGG: sdn:Sden_2289 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase complement(2403659..2404534) Shewanella amazonensis SB2B 4604225 YP_927851.1 CDS Sama_1976 NC_008700.1 2404559 2406097 R KEGG: rfr:Rfer_2334 carbohydrate kinase, FGGY; carbohydrate kinase complement(2404559..2406097) Shewanella amazonensis SB2B 4604226 YP_927852.1 CDS Sama_1977 NC_008700.1 2406187 2406666 R KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; cytosolic long-chain acyl-CoA thioester hydrolase family protein complement(2406187..2406666) Shewanella amazonensis SB2B 4604227 YP_927853.1 CDS Sama_1978 NC_008700.1 2406797 2408035 R KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase II complement(2406797..2408035) Shewanella amazonensis SB2B 4604228 YP_927854.1 CDS acpP NC_008700.1 2408197 2408430 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2408197..2408430) Shewanella amazonensis SB2B 4604229 YP_927855.1 CDS Sama_1980 NC_008700.1 2408589 2409335 R KEGG: sdn:Sden_2293 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(2408589..2409335) Shewanella amazonensis SB2B 4604230 YP_927856.1 CDS Sama_1981 NC_008700.1 2409347 2410273 R KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(2409347..2410273) Shewanella amazonensis SB2B 4604231 YP_927857.1 CDS Sama_1982 NC_008700.1 2410331 2411290 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2410331..2411290) Shewanella amazonensis SB2B 4604232 YP_927858.1 CDS Sama_1983 NC_008700.1 2411305 2412333 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(2411305..2412333) Shewanella amazonensis SB2B 4604233 YP_927859.1 CDS rpmF NC_008700.1 2412348 2412518 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2412348..2412518) Shewanella amazonensis SB2B 4604234 YP_927860.1 CDS Sama_1985 NC_008700.1 2412535 2413059 R KEGG: son:SO2781 hypothetical protein; hypothetical protein complement(2412535..2413059) Shewanella amazonensis SB2B 4604235 YP_927861.1 CDS Sama_1986 NC_008700.1 2413483 2414082 D KEGG: cps:CPS_2292 septum formation protein Maf; septum formation protein Maf 2413483..2414082 Shewanella amazonensis SB2B 4604236 YP_927862.1 CDS Sama_1987 NC_008700.1 2414311 2414958 R KEGG: sdn:Sden_2300 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(2414311..2414958) Shewanella amazonensis SB2B 4604237 YP_927863.1 CDS Sama_1988 NC_008700.1 2414958 2415950 R KEGG: sdn:Sden_2301 pseudouridine synthase, RluD; pseudouridylate synthase complement(2414958..2415950) Shewanella amazonensis SB2B 4604238 YP_927864.1 CDS Sama_1989 NC_008700.1 2416434 2419859 D KEGG: son:SO2785 ribonuclease E; ribonuclease E 2416434..2419859 Shewanella amazonensis SB2B 4604239 YP_927865.1 CDS Sama_1990 NC_008700.1 2420051 2421607 D KEGG: sdn:Sden_2303 sulphate transporter; sulfate transporter 2420051..2421607 Shewanella amazonensis SB2B 4604240 YP_927866.1 CDS Sama_1991 NC_008700.1 2421680 2422609 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(2421680..2422609) Shewanella amazonensis SB2B 4604241 YP_927867.1 CDS Sama_1992 NC_008700.1 2422789 2423628 D KEGG: son:SO2589 isopenicillin-N synthase; isopenicillin-N synthase 2422789..2423628 Shewanella amazonensis SB2B 4604242 YP_927868.1 CDS rbgA NC_008700.1 2423727 2424671 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2423727..2424671 Shewanella amazonensis SB2B 4604243 YP_927869.1 CDS Sama_1994 NC_008700.1 2424820 2425296 R KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(2424820..2425296) Shewanella amazonensis SB2B 4604244 YP_927870.1 CDS Sama_1995 NC_008700.1 2425326 2426174 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(2425326..2426174) Shewanella amazonensis SB2B 4604245 YP_927871.1 CDS Sama_1996 NC_008700.1 2426623 2426994 D KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase 2426623..2426994 Shewanella amazonensis SB2B 4604246 YP_927872.1 CDS Sama_1997 NC_008700.1 2427012 2427884 R KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2427012..2427884) Shewanella amazonensis SB2B 4604247 YP_927873.1 CDS Sama_1998 NC_008700.1 2428020 2428457 D KEGG: son:SO2201 hypothetical protein; hypothetical protein 2428020..2428457 Shewanella amazonensis SB2B 4604248 YP_927874.1 CDS Sama_1999 NC_008700.1 2428478 2429407 D KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; ribosomal protein S6 modification protein 2428478..2429407 Shewanella amazonensis SB2B 4604249 YP_927875.1 CDS Sama_2000 NC_008700.1 2429593 2430453 D KEGG: son:SO2199 hypothetical protein; hypothetical protein 2429593..2430453 Shewanella amazonensis SB2B 4604250 YP_927876.1 CDS Sama_2001 NC_008700.1 2430742 2431785 D KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 2430742..2431785 Shewanella amazonensis SB2B 4604251 YP_927877.1 CDS Sama_2002 NC_008700.1 2431772 2432416 R KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase complement(2431772..2432416) Shewanella amazonensis SB2B 4604252 YP_927878.1 CDS Sama_2003 NC_008700.1 2432403 2434664 R KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; inter-alpha-trypsin inhibitor domain-containing protein complement(2432403..2434664) Shewanella amazonensis SB2B 4604253 YP_927879.1 CDS Sama_2004 NC_008700.1 2434710 2435432 R KEGG: ppr:PBPRB0759 hypothetical OmpA family protein; OmpA family protein complement(2434710..2435432) Shewanella amazonensis SB2B 4604254 YP_927880.1 CDS Sama_2005 NC_008700.1 2435671 2436366 D KEGG: son:SO2193 DNA-binding response regulator; response regulator receiver protein 2435671..2436366 Shewanella amazonensis SB2B 4604255 YP_927881.1 CDS Sama_2006 NC_008700.1 2436363 2438522 D KEGG: son:SO2192 sensor histidine kinase; sensor histidine kinase 2436363..2438522 Shewanella amazonensis SB2B 4604256 YP_927882.1 CDS Sama_2007 NC_008700.1 2438680 2439681 D KEGG: sma:SAV2545 hypothetical protein; hypothetical protein 2438680..2439681 Shewanella amazonensis SB2B 4604257 YP_927883.1 CDS Sama_2008 NC_008700.1 2439769 2440974 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2439769..2440974 Shewanella amazonensis SB2B 4604258 YP_927884.1 CDS Sama_2009 NC_008700.1 2441141 2441635 R KEGG: son:SO2190 creA protein; creA protein complement(2441141..2441635) Shewanella amazonensis SB2B 4604259 YP_927885.1 CDS Sama_2010 NC_008700.1 2441656 2443008 R KEGG: son:SO2189 conserved hypothetical protein; putative chaperone complement(2441656..2443008) Shewanella amazonensis SB2B 4604260 YP_927886.1 CDS Sama_2011 NC_008700.1 2443352 2445544 D KEGG: vvu:VV10464 polyphosphate kinase; polyphosphate kinase 2443352..2445544 Shewanella amazonensis SB2B 4604261 YP_927887.1 CDS Sama_2012 NC_008700.1 2445564 2447072 D KEGG: son:SO2185 exopolyphosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase 2445564..2447072 Shewanella amazonensis SB2B 4604262 YP_927888.1 CDS Sama_2013 NC_008700.1 2447479 2447676 D KEGG: shm:Shewmr7_1836 hypothetical protein; hypothetical protein 2447479..2447676 Shewanella amazonensis SB2B 4604263 YP_927889.1 CDS Sama_2014 NC_008700.1 2447718 2449496 R KEGG: son:SO2286 sulfate permease family protein; sulfate permease family protein complement(2447718..2449496) Shewanella amazonensis SB2B 4604264 YP_927890.1 CDS Sama_2015 NC_008700.1 2449561 2450169 R KEGG: son:SO2285 hypothetical protein; hypothetical protein complement(2449561..2450169) Shewanella amazonensis SB2B 4604265 YP_927891.1 CDS Sama_2016 NC_008700.1 2450269 2451612 D KEGG: son:SO2282 transcriptional regulator, GntR family; GntR family transcriptional regulator 2450269..2451612 Shewanella amazonensis SB2B 4604266 YP_927892.1 CDS Sama_2017 NC_008700.1 2451798 2453003 D KEGG: son:SO2280 bicyclomycin resistance protein; bicyclomycin resistance protein 2451798..2453003 Shewanella amazonensis SB2B 4604267 YP_927893.1 CDS Sama_2018 NC_008700.1 2453387 2455108 D KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2453387..2455108 Shewanella amazonensis SB2B 4604268 YP_927894.1 CDS ilvH NC_008700.1 2455108 2455602 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2455108..2455602 Shewanella amazonensis SB2B 4604269 YP_927895.1 CDS Sama_2020 NC_008700.1 2455710 2456153 R KEGG: son:SO2277 16 kDa heat shock protein A; 16 kDa heat shock protein A complement(2455710..2456153) Shewanella amazonensis SB2B 4604270 YP_927896.1 CDS ushA NC_008700.1 2456354 2458069 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2456354..2458069) Shewanella amazonensis SB2B 4604271 YP_927897.1 CDS Sama_2022 NC_008700.1 2458429 2459109 R KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase complement(2458429..2459109) Shewanella amazonensis SB2B 4604272 YP_927898.1 CDS Sama_2023 NC_008700.1 2459113 2459343 R KEGG: sdn:Sden_2139 hypothetical protein; hypothetical protein complement(2459113..2459343) Shewanella amazonensis SB2B 4604273 YP_927899.1 CDS Sama_2024 NC_008700.1 2459353 2460354 D KEGG: bce:BC1379 gentamicin resistance protein; hypothetical protein 2459353..2460354 Shewanella amazonensis SB2B 4604274 YP_927900.1 CDS Sama_2025 NC_008700.1 2460445 2462355 R KEGG: eli:ELI_01445 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein complement(2460445..2462355) Shewanella amazonensis SB2B 4604275 YP_927901.1 CDS Sama_2026 NC_008700.1 2462458 2465664 R KEGG: eli:ELI_01440 TonB-dependent receptor; TonB-dependent receptor complement(2462458..2465664) Shewanella amazonensis SB2B 4604276 YP_927902.1 CDS Sama_2027 NC_008700.1 2466286 2466768 R KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(2466286..2466768) Shewanella amazonensis SB2B 4604277 YP_927903.1 CDS Sama_2028 NC_008700.1 2466863 2467735 R KEGG: noc:Noc_0660 hypothetical protein; hypothetical protein complement(2466863..2467735) Shewanella amazonensis SB2B 4604278 YP_927904.1 CDS Sama_2029 NC_008700.1 2467794 2468999 R KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; membrane-bound lytic transglycosylase-like protein complement(2467794..2468999) Shewanella amazonensis SB2B 4604279 YP_927905.1 CDS Sama_2030 NC_008700.1 2469214 2469573 D KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 2469214..2469573 Shewanella amazonensis SB2B 4604280 YP_927906.1 CDS Sama_2031 NC_008700.1 2469570 2470208 D KEGG: son:SO1990 hypothetical protein; hypothetical protein 2469570..2470208 Shewanella amazonensis SB2B 4604281 YP_927907.1 CDS Sama_2032 NC_008700.1 2470301 2471317 R KEGG: son:SO1989 chemotaxis protein CheV; chemotaxis protein CheV complement(2470301..2471317) Shewanella amazonensis SB2B 4604282 YP_927908.1 CDS Sama_2033 NC_008700.1 2471450 2471980 D KEGG: son:SO1691 lipoprotein Blc; lipoprotein Blc 2471450..2471980 Shewanella amazonensis SB2B 4604283 YP_927909.1 CDS Sama_2034 NC_008700.1 2471973 2472581 R KEGG: son:SO1988 hypothetical methyltransferase; methyltransferase complement(2471973..2472581) Shewanella amazonensis SB2B 4604284 YP_927910.1 CDS Sama_2035 NC_008700.1 2472727 2473281 D KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; ATP-dependent protease La 2472727..2473281 Shewanella amazonensis SB2B 4604285 YP_927911.1 CDS Sama_2036 NC_008700.1 2473361 2474008 D KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2473361..2474008 Shewanella amazonensis SB2B 4604286 YP_927912.1 CDS Sama_2037 NC_008700.1 2474001 2474789 D KEGG: son:SO1985 transcriptional activator, putative; anti-ECF sigma factor ChrR 2474001..2474789 Shewanella amazonensis SB2B 4604287 YP_927913.1 CDS Sama_2038 NC_008700.1 2474861 2476087 R KEGG: son:SO2607 spore maturation protein A-related protein; spore maturation protein A-like protein complement(2474861..2476087) Shewanella amazonensis SB2B 4604288 YP_927914.1 CDS yebU NC_008700.1 2476168 2477571 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2476168..2477571 Shewanella amazonensis SB2B 4604289 YP_927915.1 CDS Sama_2040 NC_008700.1 2477769 2478557 R KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase complement(2477769..2478557) Shewanella amazonensis SB2B 4604290 YP_927916.1 CDS Sama_2041 NC_008700.1 2478603 2478929 R KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ complement(2478603..2478929) Shewanella amazonensis SB2B 4604291 YP_927917.1 CDS Sama_2042 NC_008700.1 2478933 2479847 R KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(2478933..2479847) Shewanella amazonensis SB2B 4604292 YP_927918.1 CDS tmk NC_008700.1 2479863 2480489 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2479863..2480489) Shewanella amazonensis SB2B 4604293 YP_927919.1 CDS Sama_2044 NC_008700.1 2480486 2481460 R KEGG: son:SO2614 conserved hypothetical protein TIGR00247; hypothetical protein complement(2480486..2481460) Shewanella amazonensis SB2B 4604294 YP_927920.1 CDS Sama_2045 NC_008700.1 2481493 2482383 R KEGG: sdn:Sden_2053 aminotransferase, class IV; aminodeoxychorismate lyase complement(2481493..2482383) Shewanella amazonensis SB2B 4604295 YP_927921.1 CDS dcd NC_008700.1 2482392 2482976 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2482392..2482976) Shewanella amazonensis SB2B 4604296 YP_927922.1 CDS Sama_2047 NC_008700.1 2483007 2483645 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2483007..2483645) Shewanella amazonensis SB2B 4604297 YP_927923.1 CDS Sama_2048 NC_008700.1 2483658 2484770 R KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein complement(2483658..2484770) Shewanella amazonensis SB2B 4604298 YP_927924.1 CDS metG NC_008700.1 2484933 2486960 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2484933..2486960 Shewanella amazonensis SB2B 4604299 YP_927925.1 CDS Sama_2050 NC_008700.1 2487031 2487780 R KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein complement(2487031..2487780) Shewanella amazonensis SB2B 4604300 YP_927926.1 CDS Sama_2051 NC_008700.1 2487965 2488369 D KEGG: sdn:Sden_2074 hypothetical protein; hypothetical protein 2487965..2488369 Shewanella amazonensis SB2B 4604301 YP_927927.1 CDS Sama_2052 NC_008700.1 2488462 2488929 R KEGG: son:SO2622 hypothetical protein; hypothetical protein complement(2488462..2488929) Shewanella amazonensis SB2B 4604302 YP_927928.1 CDS aat NC_008700.1 2488981 2489691 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2488981..2489691 Shewanella amazonensis SB2B 4604303 YP_927929.1 CDS Sama_2054 NC_008700.1 2489681 2490394 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2489681..2490394 Shewanella amazonensis SB2B 4604304 YP_927930.1 CDS Sama_2055 NC_008700.1 2490505 2490723 D KEGG: son:SO2625 translation initiation factor IF-1; translation initiation factor IF-1 2490505..2490723 Shewanella amazonensis SB2B 4604305 YP_927931.1 CDS Sama_2056 NC_008700.1 2490792 2493053 R KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; ATP-dependent Clp protease, ATP-binding subunit ClpA complement(2490792..2493053) Shewanella amazonensis SB2B 4604306 YP_927932.1 CDS clpS NC_008700.1 2493102 2493410 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2493102..2493410) Shewanella amazonensis SB2B 4604307 YP_927933.1 CDS Sama_2058 NC_008700.1 2493616 2493822 D KEGG: son:SO2628 stress response protein CspD; cold-shock DNA-binding domain-containing protein 2493616..2493822 Shewanella amazonensis SB2B 4604308 YP_927934.1 CDS Sama_2059 NC_008700.1 2493959 2496184 R KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase (NADP(+)) complement(2493959..2496184) Shewanella amazonensis SB2B 4604309 YP_927935.1 CDS Sama_2060 NC_008700.1 2496625 2497263 D KEGG: sdn:Sden_1830 pseudouridine synthase, Rsu; pseudouridylate synthase 2496625..2497263 Shewanella amazonensis SB2B 4604310 YP_927936.1 CDS Sama_2061 NC_008700.1 2497285 2497758 D KEGG: son:SO2631 MutT/nudix family protein; MutT/nudix family protein 2497285..2497758 Shewanella amazonensis SB2B 4604311 YP_927937.1 CDS mnmA NC_008700.1 2497940 2499073 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2497940..2499073 Shewanella amazonensis SB2B 4604312 YP_927938.1 CDS Sama_2063 NC_008700.1 2499077 2499691 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2499077..2499691 Shewanella amazonensis SB2B 4604313 YP_927939.1 CDS Sama_2064 NC_008700.1 2499725 2501095 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2499725..2501095 Shewanella amazonensis SB2B 4604314 YP_927940.1 CDS Sama_2065 NC_008700.1 2501148 2502266 D KEGG: sdn:Sden_1825 cupin 4; cupin 4 2501148..2502266 Shewanella amazonensis SB2B 4604315 YP_927941.1 CDS Sama_2066 NC_008700.1 2502391 2502834 R KEGG: sdn:Sden_1824 hypothetical protein; hypothetical protein complement(2502391..2502834) Shewanella amazonensis SB2B 4604316 YP_927942.1 CDS Sama_2067 NC_008700.1 2503088 2504122 D KEGG: son:SO2638 leucine dehydrogenase; leucine dehydrogenase 2503088..2504122 Shewanella amazonensis SB2B 4604317 YP_927943.1 CDS Sama_2068 NC_008700.1 2504335 2504682 D KEGG: son:SO2639 hypothetical protein; hypothetical protein 2504335..2504682 Shewanella amazonensis SB2B 4604318 YP_927944.1 CDS Sama_2069 NC_008700.1 2504835 2505251 R KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2504835..2505251) Shewanella amazonensis SB2B 4604319 YP_927945.1 CDS Sama_2070 NC_008700.1 2505349 2505834 R KEGG: sdn:Sden_2007 hypothetical protein; hypothetical protein complement(2505349..2505834) Shewanella amazonensis SB2B 4604320 YP_927946.1 CDS Sama_2071 NC_008700.1 2505974 2508997 R KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; oxidoreductase, FAD-binding complement(2505974..2508997) Shewanella amazonensis SB2B 4604321 YP_927947.1 CDS Sama_2072 NC_008700.1 2509179 2511548 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2509179..2511548) Shewanella amazonensis SB2B 4604322 YP_927948.1 CDS Sama_2073 NC_008700.1 2511673 2512485 D KEGG: son:SO2645 hypothetical protein; hypothetical protein 2511673..2512485 Shewanella amazonensis SB2B 4604323 YP_927949.1 CDS Sama_2074 NC_008700.1 2512636 2513697 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2512636..2513697 Shewanella amazonensis SB2B 4604324 YP_927950.1 CDS Sama_2075 NC_008700.1 2513940 2514365 D KEGG: sdn:Sden_2107 thioesterase superfamily; thioesterase superfamily protein 2513940..2514365 Shewanella amazonensis SB2B 4604325 YP_927951.1 CDS Sama_2076 NC_008700.1 2514520 2515236 D KEGG: son:SO2648 DNA-binding response regulator, LuxR family; response regulator receiver protein 2514520..2515236 Shewanella amazonensis SB2B 4604326 YP_927952.1 CDS Sama_2077 NC_008700.1 2515300 2516589 R KEGG: son:SO2052 hypothetical oxidoreductase; oxidoreductase complement(2515300..2516589) Shewanella amazonensis SB2B 4604327 YP_927953.1 CDS Sama_2078 NC_008700.1 2516754 2520179 R KEGG: son:SO2742 sensor histidine kinase/response regulator; sensor histidine kinase/response regulator complement(2516754..2520179) Shewanella amazonensis SB2B 4604328 YP_927954.1 CDS Sama_2079 NC_008700.1 2520358 2522310 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2520358..2522310 Shewanella amazonensis SB2B 4604329 YP_927955.1 CDS Sama_2080 NC_008700.1 2522415 2524181 D KEGG: son:SO2744 helicase; helicase 2522415..2524181 Shewanella amazonensis SB2B 4604330 YP_927956.1 CDS grxA NC_008700.1 2524255 2524515 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2524255..2524515 Shewanella amazonensis SB2B 4604331 YP_927957.1 CDS Sama_2082 NC_008700.1 2524637 2525947 D KEGG: sdn:Sden_2545 ATP-binding region, ATPase-like protein; Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein 2524637..2525947 Shewanella amazonensis SB2B 4604332 YP_927958.1 CDS Sama_2083 NC_008700.1 2526023 2527171 R KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein complement(2526023..2527171) Shewanella amazonensis SB2B 4604333 YP_927959.1 CDS Sama_2084 NC_008700.1 2528286 2529050 R KEGG: son:SO2746 hypothetical protein; hypothetical protein complement(2528286..2529050) Shewanella amazonensis SB2B 4605987 YP_927960.1 CDS Sama_2085 NC_008700.1 2529076 2529612 R KEGG: son:SO2747 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein complement(2529076..2529612) Shewanella amazonensis SB2B 4604335 YP_927961.1 CDS tolB NC_008700.1 2529649 2530974 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2529649..2530974) Shewanella amazonensis SB2B 4604336 YP_927962.1 CDS Sama_2087 NC_008700.1 2530984 2531967 R KEGG: sdn:Sden_1393 TolA; hypothetical protein complement(2530984..2531967) Shewanella amazonensis SB2B 4604337 YP_927963.1 CDS Sama_2088 NC_008700.1 2531972 2532409 R KEGG: son:SO2750 tolR protein; tolR protein complement(2531972..2532409) Shewanella amazonensis SB2B 4604338 YP_927964.1 CDS Sama_2089 NC_008700.1 2532409 2533098 R KEGG: sdn:Sden_1391 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2532409..2533098) Shewanella amazonensis SB2B 4604339 YP_927965.1 CDS Sama_2090 NC_008700.1 2533088 2533489 R KEGG: son:SO2752 conserved hypothetical protein TIGR00051; hypothetical protein complement(2533088..2533489) Shewanella amazonensis SB2B 4604340 YP_927966.1 CDS Sama_2091 NC_008700.1 2533646 2535802 R KEGG: son:SO2753 prolyl endopeptidase; prolyl oligopeptidase complement(2533646..2535802) Shewanella amazonensis SB2B 4604341 YP_927967.1 CDS Sama_2092 NC_008700.1 2536350 2537219 R KEGG: sdn:Sden_1398 OmpA/MotB; OmpA/MotB protein complement(2536350..2537219) Shewanella amazonensis SB2B 4604342 YP_927968.1 CDS Sama_2093 NC_008700.1 2537303 2538079 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2537303..2538079 Shewanella amazonensis SB2B 4604343 YP_927969.1 CDS Sama_2094 NC_008700.1 2538204 2538809 R KEGG: sdn:Sden_2091 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen complement(2538204..2538809) Shewanella amazonensis SB2B 4604344 YP_927970.1 CDS Sama_2095 NC_008700.1 2539113 2540435 D KEGG: son:SO2757 membrane protein, putative; hypothetical protein 2539113..2540435 Shewanella amazonensis SB2B 4604345 YP_927971.1 CDS upp NC_008700.1 2540524 2541150 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2540524..2541150) Shewanella amazonensis SB2B 4604346 YP_927972.1 CDS Sama_2097 NC_008700.1 2541383 2542420 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2541383..2542420 Shewanella amazonensis SB2B 4604347 YP_927973.1 CDS purN NC_008700.1 2542420 2543058 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2542420..2543058 Shewanella amazonensis SB2B 4604348 YP_927974.1 CDS Sama_2099 NC_008700.1 2543313 2544059 D KEGG: son:SO2762 nagD protein; UMP phosphatase 2543313..2544059 Shewanella amazonensis SB2B 4604349 YP_927975.1 CDS Sama_2100 NC_008700.1 2544262 2545890 D KEGG: son:SO2766 hypothetical protein; hypothetical protein 2544262..2545890 Shewanella amazonensis SB2B 4604350 YP_927976.1 CDS asnB NC_008700.1 2546210 2547874 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2546210..2547874 Shewanella amazonensis SB2B 4604351 YP_927977.1 CDS Sama_2102 NC_008700.1 2548010 2548204 R KEGG: sfr:Sfri_1599 protein of unknown function DUF1289; hypothetical protein complement(2548010..2548204) Shewanella amazonensis SB2B 4604352 YP_927978.1 CDS Sama_2103 NC_008700.1 2548206 2548547 R KEGG: cvi:CV0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; putative 5-carboxymethyl-2-hydroxymuconate D-isomerase complement(2548206..2548547) Shewanella amazonensis SB2B 4604353 YP_927979.1 CDS Sama_2104 NC_008700.1 2548556 2548903 R KEGG: sdn:Sden_2036 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2548556..2548903) Shewanella amazonensis SB2B 4604354 YP_927980.1 CDS Sama_2105 NC_008700.1 2548968 2549672 R KEGG: son:SO2794 hypothetical protein; hypothetical protein complement(2548968..2549672) Shewanella amazonensis SB2B 4604355 YP_927981.1 CDS Sama_2106 NC_008700.1 2549744 2550172 R KEGG: sdn:Sden_2038 hypothetical protein; hypothetical protein complement(2549744..2550172) Shewanella amazonensis SB2B 4604356 YP_927982.1 CDS Sama_2107 NC_008700.1 2550422 2551432 R KEGG: mca:MCA2508 oxygenase, putative; flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1-like protein complement(2550422..2551432) Shewanella amazonensis SB2B 4604357 YP_927983.1 CDS Sama_2108 NC_008700.1 2551562 2552251 R KEGG: son:SO2798 hypothetical protein; hypothetical protein complement(2551562..2552251) Shewanella amazonensis SB2B 4604358 YP_927984.1 CDS Sama_2109 NC_008700.1 2552288 2552767 D KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 2552288..2552767 Shewanella amazonensis SB2B 4604359 YP_927985.1 CDS Sama_2110 NC_008700.1 2552837 2553055 D KEGG: sdn:Sden_2373 hypothetical protein; hypothetical protein 2552837..2553055 Shewanella amazonensis SB2B 4604360 YP_927986.1 CDS Sama_2111 NC_008700.1 2553180 2554697 R KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein complement(2553180..2554697) Shewanella amazonensis SB2B 4604361 YP_927987.1 CDS Sama_2112 NC_008700.1 2554709 2555596 R KEGG: sdn:Sden_2375 ion transport protein; ion transport protein complement(2554709..2555596) Shewanella amazonensis SB2B 4604362 YP_927988.1 CDS Sama_2113 NC_008700.1 2555711 2556208 D KEGG: sdn:Sden_2376 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG protein 2555711..2556208 Shewanella amazonensis SB2B 4604363 YP_927989.1 CDS Sama_2114 NC_008700.1 2556216 2556776 D KEGG: sdn:Sden_2377 protein of unknown function DUF991; hypothetical protein 2556216..2556776 Shewanella amazonensis SB2B 4604364 YP_927990.1 CDS Sama_2115 NC_008700.1 2556975 2557820 D KEGG: son:SO2769 hypothetical protein; hypothetical protein 2556975..2557820 Shewanella amazonensis SB2B 4604365 YP_927991.1 CDS Sama_2116 NC_008700.1 2558010 2560658 D KEGG: son:SO2930 hypothetical protein; hypothetical protein 2558010..2560658 Shewanella amazonensis SB2B 4604366 YP_927992.1 CDS Sama_2117 NC_008700.1 2560706 2561896 D KEGG: son:SO2931 hypothetical protein; hypothetical protein 2560706..2561896 Shewanella amazonensis SB2B 4604367 YP_927993.1 CDS Sama_2118 NC_008700.1 2561847 2562923 R KEGG: son:SO2932 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2561847..2562923) Shewanella amazonensis SB2B 4604368 YP_927994.1 CDS Sama_2119 NC_008700.1 2563080 2564093 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(2563080..2564093) Shewanella amazonensis SB2B 4604369 YP_927995.1 CDS Sama_2120 NC_008700.1 2564228 2566708 R KEGG: son:SO2934 hypothetical protein; hypothetical protein complement(2564228..2566708) Shewanella amazonensis SB2B 4604370 YP_927996.1 CDS Sama_2121 NC_008700.1 2566971 2567708 D KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase 2566971..2567708 Shewanella amazonensis SB2B 4604371 YP_927997.1 CDS Sama_2122 NC_008700.1 2567784 2568695 D KEGG: vpa:VPA0405 hypothetical protein; hypothetical protein 2567784..2568695 Shewanella amazonensis SB2B 4604372 YP_927998.1 CDS Sama_2123 NC_008700.1 2568762 2569715 R KEGG: son:SO2936 hypothetical protein; hypothetical protein complement(2568762..2569715) Shewanella amazonensis SB2B 4604373 YP_927999.1 CDS Sama_2124 NC_008700.1 2569814 2570701 R KEGG: sdn:Sden_2436 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu complement(2569814..2570701) Shewanella amazonensis SB2B 4604374 YP_928000.1 CDS Sama_2125 NC_008700.1 2570694 2571290 R KEGG: son:SO3014 putative segregation and condensation protein B; putative transcriptional regulator complement(2570694..2571290) Shewanella amazonensis SB2B 4604375 YP_928001.1 CDS Sama_2126 NC_008700.1 2571290 2572078 R KEGG: son:SO3015 putative segregation and condensation protein A; putative segregation and condensation protein A complement(2571290..2572078) Shewanella amazonensis SB2B 4604376 YP_928002.1 CDS Sama_2127 NC_008700.1 2572267 2572887 R KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(2572267..2572887) Shewanella amazonensis SB2B 4604377 YP_928003.1 CDS Sama_2128 NC_008700.1 2572884 2573744 R KEGG: sdn:Sden_2449 PHP-like protein; PHP-like protein complement(2572884..2573744) Shewanella amazonensis SB2B 4604378 YP_928004.1 CDS Sama_2129 NC_008700.1 2574098 2575681 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2574098..2575681 Shewanella amazonensis SB2B 4604379 YP_928005.1 CDS Sama_2130 NC_008700.1 2575678 2576277 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2575678..2576277 Shewanella amazonensis SB2B 4604380 YP_928006.1 CDS trpD NC_008700.1 2576274 2577308 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2576274..2577308 Shewanella amazonensis SB2B 4604381 YP_928007.1 CDS Sama_2132 NC_008700.1 2577322 2578710 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2577322..2578710 Shewanella amazonensis SB2B 4604382 YP_928008.1 CDS Sama_2133 NC_008700.1 2578783 2579976 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2578783..2579976 Shewanella amazonensis SB2B 4604383 YP_928009.1 CDS trpA NC_008700.1 2579988 2580788 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2579988..2580788 Shewanella amazonensis SB2B 4604384 YP_928010.1 CDS Sama_2135 NC_008700.1 2581044 2581577 D KEGG: rme:Rmet_5659 isochorismatase hydrolase; isochorismatase hydrolase 2581044..2581577 Shewanella amazonensis SB2B 4604385 YP_928011.1 CDS Sama_2136 NC_008700.1 2581701 2583008 R KEGG: vch:VC0600 hypothetical protein; hypothetical protein complement(2581701..2583008) Shewanella amazonensis SB2B 4604386 YP_928012.1 CDS Sama_2137 NC_008700.1 2583191 2583736 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2583191..2583736 Shewanella amazonensis SB2B 4604387 YP_928013.1 CDS Sama_2138 NC_008700.1 2583736 2584035 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2583736..2584035 Shewanella amazonensis SB2B 4604388 YP_928014.1 CDS Sama_2139 NC_008700.1 2584035 2584841 D KEGG: sdn:Sden_1465 exodeoxyribonuclease III; exodeoxyribonuclease III 2584035..2584841 Shewanella amazonensis SB2B 4604389 YP_928015.1 CDS Sama_2140 NC_008700.1 2584975 2586414 R KEGG: sdn:Sden_0861 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer complement(2584975..2586414) Shewanella amazonensis SB2B 4604390 YP_928016.1 CDS Sama_2141 NC_008700.1 2586534 2586998 R KEGG: son:SO3047 hypothetical protein; hypothetical protein complement(2586534..2586998) Shewanella amazonensis SB2B 4604391 YP_928017.1 CDS Sama_2142 NC_008700.1 2587229 2587873 R KEGG: son:SO3054 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(2587229..2587873) Shewanella amazonensis SB2B 4604392 YP_928018.1 CDS Sama_2143 NC_008700.1 2588046 2589365 D KEGG: sfr:Sfri_1410 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2588046..2589365 Shewanella amazonensis SB2B 4604393 YP_928019.1 CDS Sama_2144 NC_008700.1 2589555 2589743 D hypothetical protein 2589555..2589743 Shewanella amazonensis SB2B 4604394 YP_928020.1 CDS Sama_2145 NC_008700.1 2589979 2592063 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2589979..2592063) Shewanella amazonensis SB2B 4604395 YP_928021.1 CDS Sama_2146 NC_008700.1 2592502 2594016 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2592502..2594016) Shewanella amazonensis SB2B 4604396 YP_928022.1 CDS Sama_2147 NC_008700.1 2594061 2594549 R KEGG: son:SO3065 colicin V production protein; colicin V production protein complement(2594061..2594549) Shewanella amazonensis SB2B 4604397 YP_928023.1 CDS Sama_2148 NC_008700.1 2594654 2595325 R KEGG: sdn:Sden_1488 sporulation related; sporulation-like protein complement(2594654..2595325) Shewanella amazonensis SB2B 4604398 YP_928024.1 CDS Sama_2149 NC_008700.1 2595338 2596603 R KEGG: son:SO3067 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2595338..2596603) Shewanella amazonensis SB2B 4604399 YP_928025.1 CDS truA NC_008700.1 2596714 2597499 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2596714..2597499) Shewanella amazonensis SB2B 4604400 YP_928026.1 CDS Sama_2151 NC_008700.1 2597618 2600431 R KEGG: son:SO3069 putative membrane protein; hypothetical protein complement(2597618..2600431) Shewanella amazonensis SB2B 4604401 YP_928027.1 CDS Sama_2152 NC_008700.1 2600610 2601626 R KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; aspartate-semialdehyde dehydrogenase complement(2600610..2601626) Shewanella amazonensis SB2B 4604402 YP_928028.1 CDS Sama_2153 NC_008700.1 2601632 2602759 R KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; erythronate-4-phosphate dehydrogenase complement(2601632..2602759) Shewanella amazonensis SB2B 4604403 YP_928029.1 CDS Sama_2154 NC_008700.1 2602880 2604091 R KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; 3-oxoacyl-ACP synthase complement(2602880..2604091) Shewanella amazonensis SB2B 4604404 YP_928030.1 CDS Sama_2155 NC_008700.1 2604195 2606009 D KEGG: son:SO3073 hypothetical protein; glycine/D-amino acid oxidase (deaminating)-like protein 2604195..2606009 Shewanella amazonensis SB2B 4604405 YP_928031.1 CDS Sama_2156 NC_008700.1 2606087 2606350 R KEGG: sdn:Sden_1540 hypothetical protein; hypothetical protein complement(2606087..2606350) Shewanella amazonensis SB2B 4604406 YP_928032.1 CDS Sama_2157 NC_008700.1 2606354 2607478 R KEGG: son:SO3077 hypothetical protein; hypothetical protein complement(2606354..2607478) Shewanella amazonensis SB2B 4604407 YP_928033.1 CDS Sama_2158 NC_008700.1 2607526 2608695 R KEGG: sdn:Sden_1538 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2607526..2608695) Shewanella amazonensis SB2B 4604408 YP_928034.1 CDS Sama_2159 NC_008700.1 2608704 2609801 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2608704..2609801) Shewanella amazonensis SB2B 4604409 YP_928035.1 CDS Sama_2160 NC_008700.1 2609875 2610819 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2609875..2610819) Shewanella amazonensis SB2B 4604410 YP_928036.1 CDS Sama_2161 NC_008700.1 2610899 2611429 D KEGG: son:SO3081 Smr domain protein; hypothetical protein 2610899..2611429 Shewanella amazonensis SB2B 4604411 YP_928037.1 CDS Sama_2162 NC_008700.1 2611555 2612025 R KEGG: son:SO3082 phosphohistidine phosphatase SixA; putative phosphohistidine phosphatase, SixA complement(2611555..2612025) Shewanella amazonensis SB2B 4604412 YP_928038.1 CDS Sama_2163 NC_008700.1 2612191 2614980 D KEGG: son:SO3083 peptidase, M16 family; M16 family peptidase 2612191..2614980 Shewanella amazonensis SB2B 4604413 YP_928039.1 CDS Sama_2164 NC_008700.1 2615312 2619607 D KEGG: son:SO3084 sensory box protein; sensory box protein 2615312..2619607 Shewanella amazonensis SB2B 4604414 YP_928040.1 CDS Sama_2165 NC_008700.1 2619699 2620130 D KEGG: sfr:Sfri_2673 hypothetical protein; hypothetical protein 2619699..2620130 Shewanella amazonensis SB2B 4604415 YP_928041.1 CDS Sama_2166 NC_008700.1 2620346 2620591 R KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein complement(2620346..2620591) Shewanella amazonensis SB2B 4604416 YP_928042.1 CDS fadJ NC_008700.1 2620722 2622842 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2620722..2622842) Shewanella amazonensis SB2B 4604417 YP_928043.1 CDS fadI NC_008700.1 2622849 2624159 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2622849..2624159) Shewanella amazonensis SB2B 4604418 YP_928044.1 CDS Sama_2169 NC_008700.1 2624387 2625343 D KEGG: son:SO3090 MoxR domain protein; MoxR domain-containing protein 2624387..2625343 Shewanella amazonensis SB2B 4604419 YP_928045.1 CDS Sama_2170 NC_008700.1 2625343 2626299 D KEGG: son:SO3091 hypothetical protein; hypothetical protein 2625343..2626299 Shewanella amazonensis SB2B 4604420 YP_928046.1 CDS Sama_2171 NC_008700.1 2626304 2626843 D KEGG: son:SO3092 hypothetical protein; hypothetical protein 2626304..2626843 Shewanella amazonensis SB2B 4604421 YP_928047.1 CDS Sama_2172 NC_008700.1 2626837 2627820 D KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein 2626837..2627820 Shewanella amazonensis SB2B 4604422 YP_928048.1 CDS Sama_2173 NC_008700.1 2627817 2629922 D KEGG: son:SO3094 TPR domain protein; hypothetical protein 2627817..2629922 Shewanella amazonensis SB2B 4604423 YP_928049.1 CDS Sama_2174 NC_008700.1 2629916 2631538 D KEGG: son:SO3095 hypothetical protein; hypothetical protein 2629916..2631538 Shewanella amazonensis SB2B 4604424 YP_928050.1 CDS Sama_2175 NC_008700.1 2631702 2632265 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2631702..2632265 Shewanella amazonensis SB2B 4604425 YP_928051.1 CDS Sama_2176 NC_008700.1 2632258 2632962 D KEGG: son:SO3097 hypothetical protein; hypothetical protein 2632258..2632962 Shewanella amazonensis SB2B 4604426 YP_928052.1 CDS Sama_2177 NC_008700.1 2633235 2634683 D KEGG: sdn:Sden_1520 sodium/proline symporter; sodium/proline symporter 2633235..2634683 Shewanella amazonensis SB2B 4604427 YP_928053.1 CDS Sama_2178 NC_008700.1 2635010 2636332 D KEGG: sdn:Sden_1414 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2635010..2636332 Shewanella amazonensis SB2B 4604428 YP_928054.1 CDS Sama_2179 NC_008700.1 2636457 2636834 D KEGG: son:SO3100 hypothetical protein; hypothetical protein 2636457..2636834 Shewanella amazonensis SB2B 4604429 YP_928055.1 CDS Sama_2180 NC_008700.1 2636912 2637628 D KEGG: son:SO3101 hypothetical protein; hypothetical protein 2636912..2637628 Shewanella amazonensis SB2B 4604430 YP_928056.1 CDS Sama_2181 NC_008700.1 2637764 2638759 D KEGG: son:SO3102 AcrA/AcrE family protein; AcrA/AcrE family protein 2637764..2638759 Shewanella amazonensis SB2B 4604431 YP_928057.1 CDS Sama_2182 NC_008700.1 2638770 2641991 D KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 2638770..2641991 Shewanella amazonensis SB2B 4604432 YP_928058.1 CDS Sama_2183 NC_008700.1 2642017 2642232 D KEGG: son:SO3104 hypothetical protein; hypothetical protein 2642017..2642232 Shewanella amazonensis SB2B 4604433 YP_928059.1 CDS Sama_2184 NC_008700.1 2642265 2642654 D KEGG: son:SO3105 phage shock protein E; phage shock protein E 2642265..2642654 Shewanella amazonensis SB2B 4604434 YP_928060.1 CDS Sama_2185 NC_008700.1 2643189 2645600 D KEGG: son:SO3106 cold-active serine alkaline protease; cold-active serine alkaline protease 2643189..2645600 Shewanella amazonensis SB2B 4604435 YP_928061.1 CDS Sama_2186 NC_008700.1 2645717 2646256 R KEGG: son:SO3107 hypothetical protein; hypothetical protein complement(2645717..2646256) Shewanella amazonensis SB2B 4604436 YP_928062.1 CDS Sama_2187 NC_008700.1 2646275 2647186 R KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; precorrin-2 oxidase/ferrochelatase complement(2646275..2647186) Shewanella amazonensis SB2B 4604437 YP_928063.1 CDS Sama_2188 NC_008700.1 2647195 2647554 R KEGG: sdn:Sden_1406 rhodanese-like protein; rhodanese-like protein complement(2647195..2647554) Shewanella amazonensis SB2B 4604438 YP_928064.1 CDS Sama_2189 NC_008700.1 2647632 2647949 R KEGG: son:SO3109 hypothetical protein; hypothetical protein complement(2647632..2647949) Shewanella amazonensis SB2B 4604439 YP_928065.1 CDS secF NC_008700.1 2648150 2649097 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2648150..2649097) Shewanella amazonensis SB2B 4604440 YP_928066.1 CDS secD NC_008700.1 2649111 2650961 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2649111..2650961) Shewanella amazonensis SB2B 4604441 YP_928067.1 CDS yajC NC_008700.1 2650980 2651315 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2650980..2651315) Shewanella amazonensis SB2B 4604442 YP_928068.1 CDS tgt NC_008700.1 2651342 2652466 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2651342..2652466) Shewanella amazonensis SB2B 4604443 YP_928069.1 CDS queA NC_008700.1 2652619 2653656 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2652619..2653656) Shewanella amazonensis SB2B 4604444 YP_928070.1 CDS Sama_2195 NC_008700.1 2654142 2654735 D KEGG: sdn:Sden_1399 protein of unknown function DUF479; hypothetical protein 2654142..2654735 Shewanella amazonensis SB2B 4604445 YP_928071.1 CDS Sama_2196 NC_008700.1 2654736 2655248 D KEGG: son:SO3117 thioredoxin, putative; thioredoxin 2654736..2655248 Shewanella amazonensis SB2B 4604446 YP_928072.1 CDS Sama_2197 NC_008700.1 2655310 2655984 D KEGG: sdn:Sden_2524 pseudouridylate synthase; pseudouridylate synthase 2655310..2655984 Shewanella amazonensis SB2B 4604447 YP_928073.1 CDS Sama_2198 NC_008700.1 2656005 2656421 R KEGG: son:SO3119 hypothetical protein; hypothetical protein complement(2656005..2656421) Shewanella amazonensis SB2B 4604448 YP_928074.1 CDS Sama_2199 NC_008700.1 2656764 2657267 R KEGG: son:SO3121 hypothetical protein; hypothetical protein complement(2656764..2657267) Shewanella amazonensis SB2B 4604449 YP_928075.1 CDS Sama_2200 NC_008700.1 2657360 2658577 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(2657360..2658577) Shewanella amazonensis SB2B 4604450 YP_928076.1 CDS Sama_2201 NC_008700.1 2658745 2659644 R KEGG: son:SO3123 chemotaxis protein CheV; chemotaxis protein CheV complement(2658745..2659644) Shewanella amazonensis SB2B 4604451 YP_928077.1 CDS Sama_2202 NC_008700.1 2659662 2661188 R KEGG: vvu:VV13126 phopholipase D-family protein; phopholipase D-family protein complement(2659662..2661188) Shewanella amazonensis SB2B 4604452 YP_928078.1 CDS Sama_2203 NC_008700.1 2661210 2661686 R KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; tyrosine-specific protein phosphatase complement(2661210..2661686) Shewanella amazonensis SB2B 4604453 YP_928079.1 CDS Sama_2204 NC_008700.1 2661775 2662314 R KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2661775..2662314) Shewanella amazonensis SB2B 4604454 YP_928080.1 CDS Sama_2205 NC_008700.1 2662444 2663895 R KEGG: son:SO3127 Ada regulatory protein, putative; Ada regulatory protein complement(2662444..2663895) Shewanella amazonensis SB2B 4604455 YP_928081.1 CDS Sama_2206 NC_008700.1 2664098 2665936 D KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter ATP-binding protein/permease 2664098..2665936 Shewanella amazonensis SB2B 4604456 YP_928082.1 CDS gltX NC_008700.1 2667907 2669316 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2667907..2669316) Shewanella amazonensis SB2B 4605999 YP_928083.1 CDS Sama_2208 NC_008700.1 2669558 2669785 D KEGG: son:SO3132 hypothetical protein; hypothetical protein 2669558..2669785 Shewanella amazonensis SB2B 4604458 YP_928084.1 CDS Sama_2209 NC_008700.1 2670054 2671073 D KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; C4-dicarboxylate-binding periplasmic protein 2670054..2671073 Shewanella amazonensis SB2B 4604459 YP_928085.1 CDS Sama_2210 NC_008700.1 2671170 2671811 D KEGG: son:SO3135 C4-dicarboxylate transporter, putative; C4-dicarboxylate transporter 2671170..2671811 Shewanella amazonensis SB2B 4604460 YP_928086.1 CDS Sama_2211 NC_008700.1 2671808 2673208 D KEGG: son:SO3136 C4-dicarboxylate transport protein; C4-dicarboxylate transport protein 2671808..2673208 Shewanella amazonensis SB2B 4604461 YP_928087.1 CDS Sama_2212 NC_008700.1 2673300 2675102 D KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; putative two-component sensor histidine kinase protein 2673300..2675102 Shewanella amazonensis SB2B 4604462 YP_928088.1 CDS Sama_2213 NC_008700.1 2675092 2676477 D KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; response regulator receiver protein 2675092..2676477 Shewanella amazonensis SB2B 4604463 YP_928089.1 CDS Sama_2214 NC_008700.1 2676452 2677681 R KEGG: son:SO1917 multidrug resistance protein, putative; multidrug resistance protein complement(2676452..2677681) Shewanella amazonensis SB2B 4604464 YP_928090.1 CDS Sama_2215 NC_008700.1 2677804 2678685 D KEGG: son:SO1916 transcriptional regulator, LysR family; LysR family transcriptional regulator 2677804..2678685 Shewanella amazonensis SB2B 4604465 YP_928091.1 CDS Sama_2216 NC_008700.1 2678727 2679188 R KEGG: sdn:Sden_3044 hypothetical protein; hypothetical protein complement(2678727..2679188) Shewanella amazonensis SB2B 4604466 YP_928092.1 CDS Sama_2217 NC_008700.1 2679199 2681316 R KEGG: sdn:Sden_3045 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(2679199..2681316) Shewanella amazonensis SB2B 4604467 YP_928093.1 CDS Sama_2218 NC_008700.1 2681740 2682381 R KEGG: she:Shewmr4_2603 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(2681740..2682381) Shewanella amazonensis SB2B 4604468 YP_928094.1 CDS Sama_2219 NC_008700.1 2682473 2683459 R KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate hydrolase family protein complement(2682473..2683459) Shewanella amazonensis SB2B 4604469 YP_928095.1 CDS Sama_2220 NC_008700.1 2683698 2685236 R KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulatory protein TyrR complement(2683698..2685236) Shewanella amazonensis SB2B 4604470 YP_928096.1 CDS phhB NC_008700.1 2685441 2685779 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(2685441..2685779) Shewanella amazonensis SB2B 4604471 YP_928097.1 CDS phhA NC_008700.1 2685807 2686598 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(2685807..2686598) Shewanella amazonensis SB2B 4604472 YP_928098.1 CDS Sama_2223 NC_008700.1 2686957 2687865 D KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 2686957..2687865 Shewanella amazonensis SB2B 4604473 YP_928099.1 CDS Sama_2224 NC_008700.1 2687868 2688878 D KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 2687868..2688878 Shewanella amazonensis SB2B 4604474 YP_928100.1 CDS Sama_2225 NC_008700.1 2688907 2689404 D KEGG: sdn:Sden_2598 ferredoxin-type protein NapF; ferredoxin-type protein NapF 2688907..2689404 Shewanella amazonensis SB2B 4604475 YP_928101.1 CDS Sama_2226 NC_008700.1 2689762 2690178 D KEGG: sdn:Sden_0706 protein of unknown function DUF583; hypothetical protein 2689762..2690178 Shewanella amazonensis SB2B 4604476 YP_928102.1 CDS Sama_2227 NC_008700.1 2690378 2691370 D KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 2690378..2691370 Shewanella amazonensis SB2B 4604477 YP_928103.1 CDS Sama_2228 NC_008700.1 2691526 2693793 D KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 2691526..2693793 Shewanella amazonensis SB2B 4604478 YP_928104.1 CDS Sama_2229 NC_008700.1 2693918 2694610 R KEGG: son:SO1658 hypothetical protein; hypothetical protein complement(2693918..2694610) Shewanella amazonensis SB2B 4604479 YP_928105.1 CDS Sama_2230 NC_008700.1 2694607 2695344 R KEGG: son:SO1657 hypothetical protein; hypothetical protein complement(2694607..2695344) Shewanella amazonensis SB2B 4604480 YP_928106.1 CDS Sama_2231 NC_008700.1 2695484 2696383 R catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase complement(2695484..2696383) Shewanella amazonensis SB2B 4604481 YP_928107.1 CDS Sama_2232 NC_008700.1 2696411 2697256 R KEGG: son:SO1655 cysQ protein; cysQ protein complement(2696411..2697256) Shewanella amazonensis SB2B 4604482 YP_928108.1 CDS Sama_2233 NC_008700.1 2697441 2698196 R KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase complement(2697441..2698196) Shewanella amazonensis SB2B 4604483 YP_928109.1 CDS Sama_2234 NC_008700.1 2698333 2698941 D KEGG: son:SO3163 lipoprotein; lipoprotein NlpE involved in copper resistance 2698333..2698941 Shewanella amazonensis SB2B 4604484 YP_928110.1 CDS Sama_2235 NC_008700.1 2699039 2700043 R KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein; NAD dependent epimerase/dehydratase family protein complement(2699039..2700043) Shewanella amazonensis SB2B 4604485 YP_928111.1 CDS Sama_2236 NC_008700.1 2700084 2701442 R KEGG: sgl:SG1368 putative UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase complement(2700084..2701442) Shewanella amazonensis SB2B 4604486 YP_928112.1 CDS Sama_2237 NC_008700.1 2701549 2702079 R KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2701549..2702079) Shewanella amazonensis SB2B 4604487 YP_928113.1 CDS Sama_2238 NC_008700.1 2702067 2702303 R KEGG: cps:CPS_4309 hypothetical protein; hypothetical protein complement(2702067..2702303) Shewanella amazonensis SB2B 4604488 YP_928114.1 CDS Sama_2239 NC_008700.1 2702369 2703274 R KEGG: pcr:Pcryo_0627 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(2702369..2703274) Shewanella amazonensis SB2B 4604489 YP_928115.1 CDS Sama_2240 NC_008700.1 2703745 2704662 R KEGG: pcr:Pcryo_0625 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2703745..2704662) Shewanella amazonensis SB2B 4604490 YP_928116.1 CDS Sama_2241 NC_008700.1 2704667 2705032 R KEGG: bth:BT0352 hypothetical protein; hypothetical protein complement(2704667..2705032) Shewanella amazonensis SB2B 4604491 YP_928117.1 CDS Sama_2242 NC_008700.1 2705086 2706219 R KEGG: son:SO3188 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(2705086..2706219) Shewanella amazonensis SB2B 4604492 YP_928118.1 CDS Sama_2243 NC_008700.1 2706734 2708092 R KEGG: pat:Patl_1573 phosphoglucosamine mutase; phosphoglucosamine mutase complement(2706734..2708092) Shewanella amazonensis SB2B 4604493 YP_928119.1 CDS Sama_2244 NC_008700.1 2708203 2710137 R KEGG: son:SO3171 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2708203..2710137) Shewanella amazonensis SB2B 4604494 YP_928120.1 CDS Sama_2245 NC_008700.1 2710189 2710767 R KEGG: dps:DP0029 pilin glycosylation protein; pilin glycosylation protein complement(2710189..2710767) Shewanella amazonensis SB2B 4604495 YP_928121.1 CDS Sama_2246 NC_008700.1 2710777 2711610 R KEGG: pca:Pcar_1117 hypothetical protein; methionyl-tRNA formyltransferase complement(2710777..2711610) Shewanella amazonensis SB2B 4604496 YP_928122.1 CDS Sama_2247 NC_008700.1 2711624 2712190 R KEGG: ssp:SSP0070 capsular polysaccharide synthesis protein; capsular polysaccharide synthesis protein complement(2711624..2712190) Shewanella amazonensis SB2B 4604497 YP_928123.1 CDS Sama_2248 NC_008700.1 2712197 2712874 R KEGG: pca:Pcar_1118 conserved hypothetical protein, possibly membrane-associated; hypothetical protein complement(2712197..2712874) Shewanella amazonensis SB2B 4604498 YP_928124.1 CDS Sama_2249 NC_008700.1 2712884 2713807 R KEGG: lpp:lpp0827 hypothetical protein; hypothetical protein complement(2712884..2713807) Shewanella amazonensis SB2B 4604499 YP_928125.1 CDS Sama_2250 NC_008700.1 2713804 2714535 R KEGG: cps:CPS_2625 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase complement(2713804..2714535) Shewanella amazonensis SB2B 4604500 YP_928126.1 CDS Sama_2251 NC_008700.1 2714532 2715392 R KEGG: fnu:FN1909 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-glucose 4-epimerase complement(2714532..2715392) Shewanella amazonensis SB2B 4604501 YP_928127.1 CDS Sama_2252 NC_008700.1 2715393 2716022 R KEGG: mac:MA2464 hypothetical protein; hypothetical protein complement(2715393..2716022) Shewanella amazonensis SB2B 4604502 YP_928128.1 CDS Sama_2253 NC_008700.1 2716019 2717179 R KEGG: nar:Saro_3221 glycosyl transferase, group 1; hypothetical protein complement(2716019..2717179) Shewanella amazonensis SB2B 4604503 YP_928129.1 CDS Sama_2254 NC_008700.1 2717169 2718371 R KEGG: mmp:MMP0354 putative oligosaccharide transporter; hypothetical protein complement(2717169..2718371) Shewanella amazonensis SB2B 4604504 YP_928130.1 CDS Sama_2255 NC_008700.1 2718364 2719563 R KEGG: bfs:BF1907 putative LPS biosynthesis related polymerase; hypothetical protein complement(2718364..2719563) Shewanella amazonensis SB2B 4604505 YP_928131.1 CDS Sama_2256 NC_008700.1 2719556 2720596 R KEGG: mhu:Mhun_0391 glycosyl transferase, group 1; hypothetical protein complement(2719556..2720596) Shewanella amazonensis SB2B 4604506 YP_928132.1 CDS Sama_2257 NC_008700.1 2720598 2721671 R KEGG: plt:Plut_1482 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS family protein complement(2720598..2721671) Shewanella amazonensis SB2B 4604507 YP_928133.1 CDS Sama_2258 NC_008700.1 2721681 2722262 R KEGG: bbr:BB0154 probable acetyltransferase; putative acetyltransferase complement(2721681..2722262) Shewanella amazonensis SB2B 4604508 YP_928134.1 CDS Sama_2259 NC_008700.1 2722266 2723222 R KEGG: msu:MS1500 MviM protein; MviM protein complement(2722266..2723222) Shewanella amazonensis SB2B 4604509 YP_928135.1 CDS Sama_2260 NC_008700.1 2723235 2724512 R KEGG: pcr:Pcryo_0613 UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase complement(2723235..2724512) Shewanella amazonensis SB2B 4604510 YP_928136.1 CDS Sama_2261 NC_008700.1 2724529 2725650 R KEGG: vvy:VV0341 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(2724529..2725650) Shewanella amazonensis SB2B 4604511 YP_928137.1 CDS Sama_2262 NC_008700.1 2725839 2726822 R KEGG: son:SO3191 chain length determinant protein; chain length determinant protein complement(2725839..2726822) Shewanella amazonensis SB2B 4604512 YP_928138.1 CDS Sama_2263 NC_008700.1 2726964 2727350 R crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein complement(2726964..2727350) Shewanella amazonensis SB2B 4604513 YP_928139.1 CDS Sama_2264 NC_008700.1 2727592 2730075 R KEGG: sde:Sde_1576 ClpX, ATPase regulatory subunit; ClpX, ATPase regulatory subunit complement(2727592..2730075) Shewanella amazonensis SB2B 4604514 YP_928140.1 CDS Sama_2265 NC_008700.1 2730693 2731196 R KEGG: son:SO3194 transcriptional activator rfaH, putative; transcriptional activator rfaH complement(2730693..2731196) Shewanella amazonensis SB2B 4604515 YP_928141.1 CDS Sama_2266 NC_008700.1 2731622 2733094 D KEGG: sdn:Sden_1357 amino acid/peptide transporter; amino acid/peptide transporter 2731622..2733094 Shewanella amazonensis SB2B 4604516 YP_928142.1 CDS Sama_2267 NC_008700.1 2733430 2734533 R KEGG: son:SO3196 response regulator; response regulator receiver protein complement(2733430..2734533) Shewanella amazonensis SB2B 4604517 YP_928143.1 CDS Sama_2268 NC_008700.1 2734603 2735433 R KEGG: son:SO3197 vacJ lipoprotein, putative; vacJ lipoprotein complement(2734603..2735433) Shewanella amazonensis SB2B 4604518 YP_928144.1 CDS Sama_2269 NC_008700.1 2735660 2737516 D KEGG: son:SO3198 hypothetical protein; hypothetical protein 2735660..2737516 Shewanella amazonensis SB2B 4604519 YP_928145.1 CDS Sama_2270 NC_008700.1 2737519 2737821 D KEGG: sdn:Sden_1353 FlhB domain protein; FlhB domain-containing protein 2737519..2737821 Shewanella amazonensis SB2B 4604520 YP_928146.1 CDS Sama_2271 NC_008700.1 2737932 2738336 R KEGG: son:SO3200 hypothetical protein; hypothetical protein complement(2737932..2738336) Shewanella amazonensis SB2B 4604521 YP_928147.1 CDS Sama_2272 NC_008700.1 2738406 2738900 R KEGG: son:SO3202 purine-binding chemotaxis protein CheW; purine-binding chemotaxis protein CheW complement(2738406..2738900) Shewanella amazonensis SB2B 4604522 YP_928148.1 CDS Sama_2273 NC_008700.1 2738908 2739987 R KEGG: son:SO3203 CheW domain protein; CheW domain-containing protein complement(2738908..2739987) Shewanella amazonensis SB2B 4604523 YP_928149.1 CDS Sama_2274 NC_008700.1 2739971 2740762 R KEGG: son:SO3204 ParA family protein; ParA family protein complement(2739971..2740762) Shewanella amazonensis SB2B 4604524 YP_928150.1 CDS Sama_2275 NC_008700.1 2740785 2741204 R KEGG: sdn:Sden_1348 hypothetical protein; hypothetical protein complement(2740785..2741204) Shewanella amazonensis SB2B 4604525 YP_928151.1 CDS Sama_2276 NC_008700.1 2741206 2742321 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2741206..2742321) Shewanella amazonensis SB2B 4604526 YP_928152.1 CDS Sama_2277 NC_008700.1 2742352 2744631 R KEGG: son:SO3207 chemotaxis protein; putative CheA signal transduction histidine kinase complement(2742352..2744631) Shewanella amazonensis SB2B 4604527 YP_928153.1 CDS Sama_2278 NC_008700.1 2744647 2745384 R KEGG: son:SO3208 chemotaxis protein CheZ; putative chemotaxis phosphatase, CheZ complement(2744647..2745384) Shewanella amazonensis SB2B 4604528 YP_928154.1 CDS Sama_2279 NC_008700.1 2745398 2745781 R KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein complement(2745398..2745781) Shewanella amazonensis SB2B 4604529 YP_928155.1 CDS fliA NC_008700.1 2745826 2746545 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2745826..2746545) Shewanella amazonensis SB2B 4604530 YP_928156.1 CDS Sama_2281 NC_008700.1 2746538 2747419 R KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2746538..2747419) Shewanella amazonensis SB2B 4604531 YP_928157.1 CDS flhF NC_008700.1 2747424 2748815 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(2747424..2748815) Shewanella amazonensis SB2B 4604532 YP_928158.1 CDS flhA NC_008700.1 2748828 2750927 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2748828..2750927) Shewanella amazonensis SB2B 4604533 YP_928159.1 CDS flhB NC_008700.1 2751027 2752160 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2751027..2752160) Shewanella amazonensis SB2B 4604534 YP_928160.1 CDS fliR NC_008700.1 2752162 2752950 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(2752162..2752950) Shewanella amazonensis SB2B 4604535 YP_928161.1 CDS Sama_2286 NC_008700.1 2752950 2753219 R KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(2752950..2753219) Shewanella amazonensis SB2B 4604536 YP_928162.1 CDS fliP NC_008700.1 2753225 2753974 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2753225..2753974) Shewanella amazonensis SB2B 4604537 YP_928163.1 CDS Sama_2288 NC_008700.1 2753971 2754345 R KEGG: son:SO3219 flagellar protein FliO; flagellar protein FliO complement(2753971..2754345) Shewanella amazonensis SB2B 4604538 YP_928164.1 CDS fliN NC_008700.1 2754363 2754737 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(2754363..2754737) Shewanella amazonensis SB2B 4604539 YP_928165.1 CDS fliM NC_008700.1 2754749 2755777 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(2754749..2755777) Shewanella amazonensis SB2B 4604540 YP_928166.1 CDS fliL NC_008700.1 2755816 2756343 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(2755816..2756343) Shewanella amazonensis SB2B 4604541 YP_928167.1 CDS Sama_2292 NC_008700.1 2756429 2758210 R KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein FliK complement(2756429..2758210) Shewanella amazonensis SB2B 4604542 YP_928168.1 CDS Sama_2293 NC_008700.1 2758327 2758773 R KEGG: son:SO3224 flagellar protein FliJ; flagellar protein FliJ complement(2758327..2758773) Shewanella amazonensis SB2B 4604543 YP_928169.1 CDS fliI NC_008700.1 2758777 2760117 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(2758777..2760117) Shewanella amazonensis SB2B 4604544 YP_928170.1 CDS fliH NC_008700.1 2760086 2760988 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(2760086..2760988) Shewanella amazonensis SB2B 4604545 YP_928171.1 CDS fliG NC_008700.1 2760988 2762025 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2760988..2762025) Shewanella amazonensis SB2B 4604546 YP_928172.1 CDS fliF NC_008700.1 2762018 2763715 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(2762018..2763715) Shewanella amazonensis SB2B 4604547 YP_928173.1 CDS Sama_2298 NC_008700.1 2763740 2764075 R KEGG: sdn:Sden_1323 flagellar hook-basal body complex protein (FliE); flagellar hook-basal body complex protein (FliE) complement(2763740..2764075) Shewanella amazonensis SB2B 4604548 YP_928174.1 CDS Sama_2299 NC_008700.1 2764199 2765539 R KEGG: son:SO3230 flagellar regulatory protein C; response regulator receiver protein complement(2764199..2765539) Shewanella amazonensis SB2B 4604549 YP_928175.1 CDS Sama_2300 NC_008700.1 2765532 2766605 R KEGG: son:SO3231 flagellar regulatory protein B; flagellar regulatory protein B complement(2765532..2766605) Shewanella amazonensis SB2B 4604550 YP_928176.1 CDS Sama_2301 NC_008700.1 2766698 2768128 R KEGG: son:SO3232 flagellar regulatory protein A; response regulator receiver protein complement(2766698..2768128) Shewanella amazonensis SB2B 4604551 YP_928177.1 CDS fliS NC_008700.1 2768418 2768828 R flagellin specific chaperone; flagellar protein FliS complement(2768418..2768828) Shewanella amazonensis SB2B 4604552 YP_928178.1 CDS Sama_2303 NC_008700.1 2768835 2769155 R KEGG: son:SO3234 hypothetical protein; hypothetical protein complement(2768835..2769155) Shewanella amazonensis SB2B 4604553 YP_928179.1 CDS Sama_2304 NC_008700.1 2769185 2770549 R KEGG: sdn:Sden_1317 flagellar hook-associated 2-like protein; flagellar hook-associated 2-like protein complement(2769185..2770549) Shewanella amazonensis SB2B 4604554 YP_928180.1 CDS Sama_2305 NC_008700.1 2770575 2770982 R KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG complement(2770575..2770982) Shewanella amazonensis SB2B 4604555 YP_928181.1 CDS Sama_2306 NC_008700.1 2771108 2771926 R KEGG: sdn:Sden_1314 flagellin-like protein; flagellin-like protein complement(2771108..2771926) Shewanella amazonensis SB2B 4604556 YP_928182.1 CDS Sama_2307 NC_008700.1 2772176 2772997 R KEGG: sdn:Sden_1314 flagellin-like protein; flagellin-like protein complement(2772176..2772997) Shewanella amazonensis SB2B 4604557 YP_928183.1 CDS flgL NC_008700.1 2773090 2774295 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(2773090..2774295) Shewanella amazonensis SB2B 4604558 YP_928184.1 CDS Sama_2309 NC_008700.1 2774308 2776224 R KEGG: sdn:Sden_1312 flagellar hook-associated protein; flagellar hook-associated protein complement(2774308..2776224) Shewanella amazonensis SB2B 4604559 YP_928185.1 CDS flgJ NC_008700.1 2776246 2777364 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(2776246..2777364) Shewanella amazonensis SB2B 4604560 YP_928186.1 CDS flgI NC_008700.1 2777392 2778483 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(2777392..2778483) Shewanella amazonensis SB2B 4604561 YP_928187.1 CDS flgH NC_008700.1 2778496 2779170 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein complement(2778496..2779170) Shewanella amazonensis SB2B 4604562 YP_928188.1 CDS flgG NC_008700.1 2779183 2779971 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(2779183..2779971) Shewanella amazonensis SB2B 4604563 YP_928189.1 CDS flgF NC_008700.1 2779984 2780727 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(2779984..2780727) Shewanella amazonensis SB2B 4604564 YP_928190.1 CDS flgE NC_008700.1 2780894 2782255 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(2780894..2782255) Shewanella amazonensis SB2B 4604565 YP_928191.1 CDS flgD NC_008700.1 2782289 2783017 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(2782289..2783017) Shewanella amazonensis SB2B 4604566 YP_928192.1 CDS flgC NC_008700.1 2783044 2783457 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(2783044..2783457) Shewanella amazonensis SB2B 4604567 YP_928193.1 CDS flgB NC_008700.1 2783460 2783858 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(2783460..2783858) Shewanella amazonensis SB2B 4604568 YP_928194.1 CDS Sama_2319 NC_008700.1 2784000 2784833 R KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; protein-glutamate O-methyltransferase complement(2784000..2784833) Shewanella amazonensis SB2B 4604569 YP_928195.1 CDS Sama_2320 NC_008700.1 2784994 2785914 R KEGG: son:SO3252 chemotaxis protein CheV; chemotaxis protein CheV complement(2784994..2785914) Shewanella amazonensis SB2B 4604570 YP_928196.1 CDS flgA NC_008700.1 2786118 2786825 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2786118..2786825 Shewanella amazonensis SB2B 4604571 YP_928197.1 CDS Sama_2322 NC_008700.1 2786900 2787235 D KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; putative anti-sigma-28 factor, FlgM 2786900..2787235 Shewanella amazonensis SB2B 4604572 YP_928198.1 CDS Sama_2323 NC_008700.1 2787344 2787778 D KEGG: son:SO3255 flagellar biosynthetic protein FlgN; flagellar biosynthetic protein FlgN 2787344..2787778 Shewanella amazonensis SB2B 4604573 YP_928199.1 CDS Sama_2324 NC_008700.1 2787911 2788366 R KEGG: son:SO3256 hypothetical protein; hypothetical protein complement(2787911..2788366) Shewanella amazonensis SB2B 4604574 YP_928200.1 CDS Sama_2325 NC_008700.1 2788363 2788995 R KEGG: son:SO3257 hypothetical protein; hypothetical protein complement(2788363..2788995) Shewanella amazonensis SB2B 4604575 YP_928201.1 CDS Sama_2326 NC_008700.1 2789281 2790456 D KEGG: son:SO3258 hypothetical protein; hypothetical protein 2789281..2790456 Shewanella amazonensis SB2B 4604576 YP_928202.1 CDS Sama_2327 NC_008700.1 2791205 2792869 R KEGG: ilo:IL1296 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(2791205..2792869) Shewanella amazonensis SB2B 4606000 YP_928203.1 CDS Sama_2328 NC_008700.1 2793695 2794876 D KEGG: vfi:VF0140 UDP-N-acetylglucosamine 4,6-dehydratase; UDP-N-acetylglucosamine 4,6-dehydratase 2793695..2794876 Shewanella amazonensis SB2B 4604578 YP_928204.1 CDS Sama_2329 NC_008700.1 2794887 2796044 D KEGG: vvu:VV10810 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 2794887..2796044 Shewanella amazonensis SB2B 4604579 YP_928205.1 CDS Sama_2330 NC_008700.1 2796037 2797044 D KEGG: vvu:VV10809 hypothetical protein; hypothetical protein 2796037..2797044 Shewanella amazonensis SB2B 4604580 YP_928206.1 CDS Sama_2331 NC_008700.1 2797037 2798035 D KEGG: vvu:VV10808 sialic acid synthase; N-acylneuraminate-9-phosphate synthase 2797037..2798035 Shewanella amazonensis SB2B 4604581 YP_928207.1 CDS Sama_2332 NC_008700.1 2798035 2799201 D KEGG: vvu:VV10807 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2798035..2799201 Shewanella amazonensis SB2B 4604582 YP_928208.1 CDS Sama_2333 NC_008700.1 2799182 2800171 D KEGG: vvu:VV10806 hypothetical protein; hypothetical protein 2799182..2800171 Shewanella amazonensis SB2B 4604583 YP_928209.1 CDS Sama_2334 NC_008700.1 2800168 2800665 D KEGG: vvu:VV10805 acetyltransferase; acetyltransferase 2800168..2800665 Shewanella amazonensis SB2B 4604584 YP_928210.1 CDS Sama_2335 NC_008700.1 2800658 2801716 D KEGG: vpa:VP0202 putative sugar-phosphate nucleotide transferase; putative sugar-phosphate nucleotide transferase 2800658..2801716 Shewanella amazonensis SB2B 4604585 YP_928211.1 CDS Sama_2336 NC_008700.1 2801716 2802414 D KEGG: vvu:VV10803 N-acylneuraminate cytidylyltransferase; N-acylneuraminate cytidylyltransferase 2801716..2802414 Shewanella amazonensis SB2B 4604586 YP_928212.1 CDS Sama_2337 NC_008700.1 2802822 2805302 D KEGG: son:SO3273 hypothetical protein; hypothetical protein 2802822..2805302 Shewanella amazonensis SB2B 4604587 YP_928213.1 CDS Sama_2338 NC_008700.1 2805398 2805877 D KEGG: son:SO3274 hypothetical protein; hypothetical protein 2805398..2805877 Shewanella amazonensis SB2B 4604588 YP_928214.1 CDS Sama_2339 NC_008700.1 2805933 2806484 D KEGG: sdn:Sden_1281 hypothetical protein; hypothetical protein 2805933..2806484 Shewanella amazonensis SB2B 4604589 YP_928215.1 CDS Sama_2340 NC_008700.1 2806589 2807587 R KEGG: son:SO3276 hypothetical protein; hypothetical protein complement(2806589..2807587) Shewanella amazonensis SB2B 4604590 YP_928216.1 CDS Sama_2341 NC_008700.1 2807634 2808254 R KEGG: sdn:Sden_1279 regulatory protein, TetR; TetR family transcriptional regulator complement(2807634..2808254) Shewanella amazonensis SB2B 4604591 YP_928217.1 CDS Sama_2342 NC_008700.1 2808408 2809520 D KEGG: sdn:Sden_1278 secretion protein HlyD; secretion protein HlyD 2808408..2809520 Shewanella amazonensis SB2B 4604592 YP_928218.1 CDS Sama_2343 NC_008700.1 2809524 2812592 D KEGG: sdn:Sden_1277 acriflavin resistance protein; acriflavin resistance protein 2809524..2812592 Shewanella amazonensis SB2B 4604593 YP_928219.1 CDS Sama_2344 NC_008700.1 2812580 2812825 R KEGG: son:SO3280 hypothetical protein; hypothetical protein complement(2812580..2812825) Shewanella amazonensis SB2B 4604594 YP_928220.1 CDS Sama_2345 NC_008700.1 2813492 2815492 D KEGG: son:SO3282 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2813492..2815492 Shewanella amazonensis SB2B 4604595 YP_928221.1 CDS Sama_2346 NC_008700.1 2815645 2815923 R KEGG: xcv:XCV3738 putative regulatory protein, TfoX family; TfoX family regulatory protein complement(2815645..2815923) Shewanella amazonensis SB2B 4604596 YP_928222.1 CDS Sama_2347 NC_008700.1 2816027 2816140 R KEGG: sdn:Sden_1276 Cyd operon protein YbgT; Cyd operon protein YbgT complement(2816027..2816140) Shewanella amazonensis SB2B 4604597 YP_928223.1 CDS Sama_2348 NC_008700.1 2816153 2817292 R KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome bd-I oxidase subunit II complement(2816153..2817292) Shewanella amazonensis SB2B 4604598 YP_928224.1 CDS Sama_2349 NC_008700.1 2817308 2818864 R KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd-I oxidase subunit I complement(2817308..2818864) Shewanella amazonensis SB2B 4604599 YP_928225.1 CDS Sama_2350 NC_008700.1 2819978 2823859 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2819978..2823859) Shewanella amazonensis SB2B 4604600 YP_928226.1 CDS Sama_2351 NC_008700.1 2824025 2825533 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2824025..2825533 Shewanella amazonensis SB2B 4604601 YP_928227.1 CDS Sama_2352 NC_008700.1 2825833 2826405 R KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; cytidine/deoxycytidylate deaminase family protein complement(2825833..2826405) Shewanella amazonensis SB2B 4604602 YP_928228.1 CDS Sama_2353 NC_008700.1 2826457 2827323 D KEGG: dps:DP0462 hypothetical protein; diguanylate cyclase 2826457..2827323 Shewanella amazonensis SB2B 4604603 YP_928229.1 CDS Sama_2354 NC_008700.1 2827640 2828020 R KEGG: cvi:CV0615 hypothetical protein; hypothetical protein complement(2827640..2828020) Shewanella amazonensis SB2B 4604604 YP_928230.1 CDS Sama_2355 NC_008700.1 2828187 2831537 R KEGG: ecp:ECP_2709 hypothetical protein; hypothetical protein complement(2828187..2831537) Shewanella amazonensis SB2B 4604605 YP_928231.1 CDS Sama_2357 NC_008700.1 2832178 2832468 D hypothetical protein 2832178..2832468 Shewanella amazonensis SB2B 4606040 YP_928232.1 CDS guaA NC_008700.1 2832531 2834108 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2832531..2834108) Shewanella amazonensis SB2B 4604607 YP_928233.1 CDS Sama_2359 NC_008700.1 2834206 2835672 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2834206..2835672) Shewanella amazonensis SB2B 4604608 YP_928234.1 CDS xseA NC_008700.1 2835793 2837136 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2835793..2837136 Shewanella amazonensis SB2B 4604609 YP_928235.1 CDS engA NC_008700.1 2837253 2838719 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2837253..2838719) Shewanella amazonensis SB2B 4604610 YP_928236.1 CDS Sama_2362 NC_008700.1 2838800 2839987 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(2838800..2839987) Shewanella amazonensis SB2B 4604611 YP_928237.1 CDS Sama_2363 NC_008700.1 2839999 2840619 R KEGG: son:SO3310 hypothetical protein; hypothetical protein complement(2839999..2840619) Shewanella amazonensis SB2B 4604612 YP_928238.1 CDS hisS NC_008700.1 2840656 2841930 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2840656..2841930) Shewanella amazonensis SB2B 4604613 YP_928239.1 CDS ispG NC_008700.1 2842072 2843190 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2842072..2843190) Shewanella amazonensis SB2B 4604614 YP_928240.1 CDS Sama_2366 NC_008700.1 2843218 2844240 R KEGG: son:SO3313 hypothetical protein; hypothetical protein complement(2843218..2844240) Shewanella amazonensis SB2B 4604615 YP_928241.1 CDS Sama_2367 NC_008700.1 2844237 2845025 R KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; fimbrial biogenesis and twitching motility protein complement(2844237..2845025) Shewanella amazonensis SB2B 4604616 YP_928242.1 CDS Sama_2368 NC_008700.1 2845058 2846179 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2845058..2846179) Shewanella amazonensis SB2B 4604617 YP_928243.1 CDS Sama_2369 NC_008700.1 2846327 2847397 D KEGG: son:SO3316 hypothetical protein; hypothetical protein 2846327..2847397 Shewanella amazonensis SB2B 4604618 YP_928244.1 CDS Sama_2370 NC_008700.1 2847440 2849161 D KEGG: son:SO3317 5'-nucleotidase, putative; 5'-nucleotidase 2847440..2849161 Shewanella amazonensis SB2B 4604619 YP_928245.1 CDS Sama_2371 NC_008700.1 2849171 2850133 R KEGG: son:SO3323 acetyltransferase, GNAT family; hypothetical protein complement(2849171..2850133) Shewanella amazonensis SB2B 4604620 YP_928246.1 CDS Sama_2372 NC_008700.1 2850225 2850518 R KEGG: son:SO3326 hypothetical protein; hypothetical protein complement(2850225..2850518) Shewanella amazonensis SB2B 4604621 YP_928247.1 CDS Sama_2373 NC_008700.1 2850876 2851619 D KEGG: son:SO3331 hypothetical protein; hypothetical protein 2850876..2851619 Shewanella amazonensis SB2B 4604622 YP_928248.1 CDS Sama_2374 NC_008700.1 2851579 2851950 D KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator 2851579..2851950 Shewanella amazonensis SB2B 4604623 YP_928249.1 CDS Sama_2375 NC_008700.1 2852135 2853574 D KEGG: son:SO3333 transporter, putative; transporter 2852135..2853574 Shewanella amazonensis SB2B 4604624 YP_928250.1 CDS Sama_2376 NC_008700.1 2853580 2855325 D KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase 2853580..2855325 Shewanella amazonensis SB2B 4604625 YP_928251.1 CDS Sama_2377 NC_008700.1 2855374 2856198 D KEGG: son:SO3335 hypothetical protein; hypothetical protein 2855374..2856198 Shewanella amazonensis SB2B 4604626 YP_928252.1 CDS Sama_2378 NC_008700.1 2856236 2856706 D KEGG: son:SO3336 hypothetical protein; hypothetical protein 2856236..2856706 Shewanella amazonensis SB2B 4604627 YP_928253.1 CDS Sama_2379 NC_008700.1 2856700 2858166 R KEGG: sdn:Sden_1247 hypothetical protein; putative signal transduction protein complement(2856700..2858166) Shewanella amazonensis SB2B 4604628 YP_928254.1 CDS Sama_2380 NC_008700.1 2858428 2859747 R KEGG: son:SO1484 isocitrate lyase; isocitrate lyase complement(2858428..2859747) Shewanella amazonensis SB2B 4604629 YP_928255.1 CDS Sama_2381 NC_008700.1 2859826 2861457 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(2859826..2861457) Shewanella amazonensis SB2B 4604630 YP_928256.1 CDS Sama_2382 NC_008700.1 2862794 2864743 R KEGG: son:SO1480 GGDEF family protein; diguanylate cyclase complement(2862794..2864743) Shewanella amazonensis SB2B 4604631 YP_928257.1 CDS Sama_2383 NC_008700.1 2864744 2864959 R KEGG: son:SO1479 hypothetical protein; hypothetical protein complement(2864744..2864959) Shewanella amazonensis SB2B 4604632 YP_928258.1 CDS Sama_2384 NC_008700.1 2865014 2865805 R KEGG: son:SO1478 methylase, putative; methylase complement(2865014..2865805) Shewanella amazonensis SB2B 4604633 YP_928259.1 CDS Sama_2385 NC_008700.1 2866119 2866610 D KEGG: son:SO1476 small protein A; small protein A 2866119..2866610 Shewanella amazonensis SB2B 4604634 YP_928260.1 CDS Sama_2386 NC_008700.1 2866727 2867065 R KEGG: sdn:Sden_1241 protein of unknown function UPF0125; hypothetical protein complement(2866727..2867065) Shewanella amazonensis SB2B 4604635 YP_928261.1 CDS Sama_2387 NC_008700.1 2867055 2867489 R KEGG: son:SO1474 hypothetical protein; hypothetical protein complement(2867055..2867489) Shewanella amazonensis SB2B 4604636 YP_928262.1 CDS smpB NC_008700.1 2867670 2868152 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2867670..2868152 Shewanella amazonensis SB2B 4604637 YP_928263.1 CDS Sama_2389 NC_008700.1 2868769 2869650 R KEGG: son:SO2455 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2868769..2869650) Shewanella amazonensis SB2B 4606001 YP_928264.1 CDS Sama_2390 NC_008700.1 2869829 2871022 D KEGG: rso:RSc1153 putative transmembrane efflux transmembrane protein; putative transmembrane efflux transmembrane protein 2869829..2871022 Shewanella amazonensis SB2B 4604639 YP_928265.1 CDS Sama_2391 NC_008700.1 2871106 2872278 R KEGG: bha:BH1129 isoaspartyl dipeptidase; isoaspartyl dipeptidase complement(2871106..2872278) Shewanella amazonensis SB2B 4604640 YP_928266.1 CDS Sama_2392 NC_008700.1 2872278 2873732 R KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein complement(2872278..2873732) Shewanella amazonensis SB2B 4604641 YP_928267.1 CDS Sama_2393 NC_008700.1 2873783 2876383 R KEGG: ccr:CC0579 TonB-dependent receptor; TonB-dependent receptor complement(2873783..2876383) Shewanella amazonensis SB2B 4604642 YP_928268.1 CDS Sama_2394 NC_008700.1 2876743 2878422 D KEGG: ilo:IL2428 secreted protein related to cyanophycinase CphE; cyanophycinase-related exopeptidase-like protein 2876743..2878422 Shewanella amazonensis SB2B 4604643 YP_928269.1 CDS Sama_2395 NC_008700.1 2878443 2879168 R hypothetical protein complement(2878443..2879168) Shewanella amazonensis SB2B 4604644 YP_928270.1 CDS Sama_2396 NC_008700.1 2879608 2880189 D KEGG: pae:PA0307 hypothetical protein; hypothetical protein 2879608..2880189 Shewanella amazonensis SB2B 4604645 YP_928271.1 CDS Sama_2397 NC_008700.1 2880177 2881769 D KEGG: psp:PSPPH_5044 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2880177..2881769 Shewanella amazonensis SB2B 4604646 YP_928272.1 CDS Sama_2398 NC_008700.1 2881844 2882125 R KEGG: sdn:Sden_0849 hypothetical protein; hypothetical protein complement(2881844..2882125) Shewanella amazonensis SB2B 4604647 YP_928273.1 CDS Sama_2399 NC_008700.1 2882241 2882846 R KEGG: son:SO1416 DNA-binding response regulator; response regulator receiver protein complement(2882241..2882846) Shewanella amazonensis SB2B 4604648 YP_928274.1 CDS Sama_2400 NC_008700.1 2882839 2884665 R KEGG: son:SO1417 sensor histidine kinase; sensor histidine kinase complement(2882839..2884665) Shewanella amazonensis SB2B 4604649 YP_928275.1 CDS Sama_2401 NC_008700.1 2884839 2886356 D KEGG: wsu:WS0124 flavocytochrome c flavin subunit; flavocytochrome c flavin subunit 2884839..2886356 Shewanella amazonensis SB2B 4604650 YP_928276.1 CDS Sama_2402 NC_008700.1 2886367 2886735 D KEGG: son:SO1413 tetraheme cytochrome c, putative; tetraheme cytochrome c 2886367..2886735 Shewanella amazonensis SB2B 4604651 YP_928277.1 CDS Sama_2403 NC_008700.1 2886749 2887804 D KEGG: son:SO1420 outer membrane porin, putative; outer membrane porin 2886749..2887804 Shewanella amazonensis SB2B 4604652 YP_928278.1 CDS Sama_2404 NC_008700.1 2887909 2889132 R KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(2887909..2889132) Shewanella amazonensis SB2B 4604653 YP_928279.1 CDS Sama_2405 NC_008700.1 2889190 2891445 R KEGG: son:SO3389 sensory box protein; sensory box protein complement(2889190..2891445) Shewanella amazonensis SB2B 4604654 YP_928280.1 CDS Sama_2406 NC_008700.1 2891733 2894108 D KEGG: son:SO3391 ATP-dependent protease, putative; ATP-dependent protease 2891733..2894108 Shewanella amazonensis SB2B 4604655 YP_928281.1 CDS Sama_2407 NC_008700.1 2894172 2895215 R KEGG: vch:VCA0998 NADH-dependent flavin oxidoreductase, Oye family; Oye family NADH-dependent flavin oxidoreductase complement(2894172..2895215) Shewanella amazonensis SB2B 4604656 YP_928282.1 CDS Sama_2408 NC_008700.1 2895344 2895922 D KEGG: son:SO3393 transcriptional regulator, TetR family; TetR family transcriptional regulator 2895344..2895922 Shewanella amazonensis SB2B 4604657 YP_928283.1 CDS Sama_2409 NC_008700.1 2896041 2896337 R KEGG: son:SO3395 hypothetical protein; hypothetical protein complement(2896041..2896337) Shewanella amazonensis SB2B 4604658 YP_928284.1 CDS Sama_2410 NC_008700.1 2896638 2897360 D KEGG: son:SO3401 hypothetical protein; hypothetical protein 2896638..2897360 Shewanella amazonensis SB2B 4604659 YP_928285.1 CDS Sama_2411 NC_008700.1 2897450 2899003 R KEGG: son:SO0002 proton/peptide symporter family protein; proton/peptide symporter family protein complement(2897450..2899003) Shewanella amazonensis SB2B 4604660 YP_928286.1 CDS Sama_2412 NC_008700.1 2899221 2899667 R KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase complement(2899221..2899667) Shewanella amazonensis SB2B 4604661 YP_928287.1 CDS Sama_2413 NC_008700.1 2899885 2901465 R KEGG: cps:CPS_2871 cold-active alkaline serine protease; cold-active alkaline serine protease complement(2899885..2901465) Shewanella amazonensis SB2B 4604662 YP_928288.1 CDS Sama_2414 NC_008700.1 2901872 2902309 D KEGG: she:Shewmr4_1145 OsmC family protein; OsmC family protein 2901872..2902309 Shewanella amazonensis SB2B 4604663 YP_928289.1 CDS Sama_2415 NC_008700.1 2902417 2905671 R KEGG: son:SO3411 protease, putative; protease complement(2902417..2905671) Shewanella amazonensis SB2B 4604664 YP_928290.1 CDS Sama_2416 NC_008700.1 2905885 2907759 R KEGG: sdn:Sden_2554 peptidase M61; peptidase M61 complement(2905885..2907759) Shewanella amazonensis SB2B 4604665 YP_928291.1 CDS Sama_2417 NC_008700.1 2907836 2909986 D KEGG: son:SO1552 TPR domain protein; hypothetical protein 2907836..2909986 Shewanella amazonensis SB2B 4604666 YP_928292.1 CDS Sama_2418 NC_008700.1 2910129 2911685 D KEGG: son:SO1551 GGDEF domain protein protein; diguanylate cyclase 2910129..2911685 Shewanella amazonensis SB2B 4604667 YP_928293.1 CDS Sama_2419 NC_008700.1 2911732 2913087 D KEGG: son:SO1550 hypothetical protein; hypothetical protein 2911732..2913087 Shewanella amazonensis SB2B 4604668 YP_928294.1 CDS xni NC_008700.1 2913084 2913845 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 2913084..2913845 Shewanella amazonensis SB2B 4604669 YP_928295.1 CDS Sama_2421 NC_008700.1 2914004 2914393 D KEGG: son:SO1548 hypothetical protein; hypothetical protein 2914004..2914393 Shewanella amazonensis SB2B 4604670 YP_928296.1 CDS Sama_2422 NC_008700.1 2914473 2917301 R KEGG: sdn:Sden_2560 peptidase S9, prolyl oligopeptidase active site region; peptidase S9, prolyl oligopeptidase active site region complement(2914473..2917301) Shewanella amazonensis SB2B 4604671 YP_928297.1 CDS Sama_2423 NC_008700.1 2917552 2918562 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 2917552..2918562 Shewanella amazonensis SB2B 4604672 YP_928298.1 CDS Sama_2424 NC_008700.1 2918971 2919582 D KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family; peptidyl-prolyl cis-trans isomerase 2918971..2919582 Shewanella amazonensis SB2B 4604673 YP_928299.1 CDS Sama_2425 NC_008700.1 2920245 2920820 D hypothetical protein 2920245..2920820 Shewanella amazonensis SB2B 4604674 YP_928300.1 CDS Sama_2426 NC_008700.1 2920901 2921986 R KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(2920901..2921986) Shewanella amazonensis SB2B 4604675 YP_928301.1 CDS Sama_2427 NC_008700.1 2922079 2922465 R KEGG: son:SO1535 hypothetical protein; hypothetical protein complement(2922079..2922465) Shewanella amazonensis SB2B 4604676 YP_928302.1 CDS Sama_2428 NC_008700.1 2922458 2923141 R KEGG: shm:Shewmr7_2794 hypothetical protein; hypothetical protein complement(2922458..2923141) Shewanella amazonensis SB2B 4604677 YP_928303.1 CDS Sama_2429 NC_008700.1 2923122 2924033 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(2923122..2924033) Shewanella amazonensis SB2B 4604678 YP_928304.1 CDS Sama_2430 NC_008700.1 2924249 2924512 D hypothetical protein 2924249..2924512 Shewanella amazonensis SB2B 4604679 YP_928305.1 CDS Sama_2431 NC_008700.1 2924723 2926177 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(2924723..2926177) Shewanella amazonensis SB2B 4604680 YP_928306.1 CDS motB NC_008700.1 2926416 2927354 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(2926416..2927354) Shewanella amazonensis SB2B 4604681 YP_928307.1 CDS Sama_2433 NC_008700.1 2927359 2928126 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(2927359..2928126) Shewanella amazonensis SB2B 4604682 YP_928308.1 CDS Sama_2434 NC_008700.1 2928425 2928664 D KEGG: sdn:Sden_2569 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 2928425..2928664 Shewanella amazonensis SB2B 4604683 YP_928309.1 CDS Sama_2435 NC_008700.1 2928664 2929545 D KEGG: son:SO1526 geranyltranstransferase; geranyltranstransferase 2928664..2929545 Shewanella amazonensis SB2B 4604684 YP_928310.1 CDS Sama_2436 NC_008700.1 2929565 2931433 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2929565..2931433 Shewanella amazonensis SB2B 4604685 YP_928311.1 CDS Sama_2437 NC_008700.1 2931494 2932096 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2931494..2932096) Shewanella amazonensis SB2B 4604686 YP_928312.1 CDS ppnK NC_008700.1 2932197 2933075 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2932197..2933075 Shewanella amazonensis SB2B 4604687 YP_928313.1 CDS Sama_2439 NC_008700.1 2933648 2935291 D KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 2933648..2935291 Shewanella amazonensis SB2B 4604688 YP_928314.1 CDS Sama_2440 NC_008700.1 2935381 2938188 D KEGG: son:SO1521 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2935381..2938188 Shewanella amazonensis SB2B 4604689 YP_928315.1 CDS Sama_2441 NC_008700.1 2938417 2939160 D KEGG: son:SO1520 hypothetical protein; hypothetical protein 2938417..2939160 Shewanella amazonensis SB2B 4604690 YP_928316.1 CDS Sama_2442 NC_008700.1 2939174 2940574 D KEGG: son:SO1519 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2939174..2940574 Shewanella amazonensis SB2B 4604691 YP_928317.1 CDS Sama_2443 NC_008700.1 2940576 2941145 D KEGG: son:SO1518 hypothetical protein; hypothetical protein 2940576..2941145 Shewanella amazonensis SB2B 4604692 YP_928318.1 CDS Sama_2444 NC_008700.1 2941204 2942289 R KEGG: son:SO4043 TonB domain protein; TonB domain-containing protein complement(2941204..2942289) Shewanella amazonensis SB2B 4604693 YP_928319.1 CDS Sama_2445 NC_008700.1 2942391 2943722 R KEGG: shm:Shewmr7_2825 multi antimicrobial extrusion protein MatE; multi anti extrusion protein MatE complement(2942391..2943722) Shewanella amazonensis SB2B 4604694 YP_928320.1 CDS Sama_2446 NC_008700.1 2943939 2944979 R KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein/P47K family protein complement(2943939..2944979) Shewanella amazonensis SB2B 4604695 YP_928321.1 CDS Sama_2447 NC_008700.1 2945111 2946454 R KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(2945111..2946454) Shewanella amazonensis SB2B 4604696 YP_928322.1 CDS Sama_2448 NC_008700.1 2946576 2949686 R KEGG: son:SO1500 sensory box protein; sensory box protein complement(2946576..2949686) Shewanella amazonensis SB2B 4604697 YP_928323.1 CDS Sama_2449 NC_008700.1 2949794 2951410 R KEGG: son:SO1499 glycogen synthase; starch synthase complement(2949794..2951410) Shewanella amazonensis SB2B 4604698 YP_928324.1 CDS glgC NC_008700.1 2951423 2952691 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(2951423..2952691) Shewanella amazonensis SB2B 4604699 YP_928325.1 CDS Sama_2451 NC_008700.1 2952717 2955191 R KEGG: son:SO1496 glycogen phosphorylase family protein; phosphorylase complement(2952717..2955191) Shewanella amazonensis SB2B 4604700 YP_928326.1 CDS Sama_2452 NC_008700.1 2955205 2957274 R KEGG: son:SO1495 glycogen operon protein; hypothetical protein complement(2955205..2957274) Shewanella amazonensis SB2B 4604701 YP_928327.1 CDS Sama_2453 NC_008700.1 2957271 2959796 R KEGG: son:SO1494 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan-branching protein complement(2957271..2959796) Shewanella amazonensis SB2B 4604702 YP_928328.1 CDS Sama_2454 NC_008700.1 2959842 2962073 R KEGG: son:SO1493 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(2959842..2962073) Shewanella amazonensis SB2B 4604703 YP_928329.1 CDS Sama_2455 NC_008700.1 2962455 2963603 D KEGG: son:SO1490 alcohol dehydrogenase II; alcohol dehydrogenase II 2962455..2963603 Shewanella amazonensis SB2B 4604704 YP_928330.1 CDS Sama_2456 NC_008700.1 2964154 2964516 D KEGG: son:SO1489 hypothetical protein; hypothetical protein 2964154..2964516 Shewanella amazonensis SB2B 4604705 YP_928331.1 CDS Sama_2457 NC_008700.1 2964863 2966347 D KEGG: sdn:Sden_3405 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 2964863..2966347 Shewanella amazonensis SB2B 4604706 YP_928332.1 CDS Sama_2458 NC_008700.1 2966439 2967767 R KEGG: sdn:Sden_3398 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2966439..2967767) Shewanella amazonensis SB2B 4604707 YP_928333.1 CDS Sama_2459 NC_008700.1 2967768 2968352 R KEGG: sdn:Sden_3397 acetyltransferase, GNAT family; acetyltransferase complement(2967768..2968352) Shewanella amazonensis SB2B 4604708 YP_928334.1 CDS Sama_2460 NC_008700.1 2968489 2968692 D KEGG: son:SO1487 hypothetical protein; hypothetical protein 2968489..2968692 Shewanella amazonensis SB2B 4604709 YP_928335.1 CDS Sama_2461 NC_008700.1 2968693 2969061 R KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; cytosolic long-chain acyl-CoA thioester hydrolase family protein complement(2968693..2969061) Shewanella amazonensis SB2B 4604710 YP_928336.1 CDS Sama_2462 NC_008700.1 2969212 2970222 R KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase complement(2969212..2970222) Shewanella amazonensis SB2B 4604711 YP_928337.1 CDS Sama_2463 NC_008700.1 2970453 2971064 D KEGG: son:SO3342 hypothetical protein; hypothetical protein 2970453..2971064 Shewanella amazonensis SB2B 4604712 YP_928338.1 CDS Sama_2464 NC_008700.1 2971103 2971678 R KEGG: son:SO3341 antioxidant, AhpC/TSA family; anti-oxidant AhpCTSA family protein complement(2971103..2971678) Shewanella amazonensis SB2B 4604713 YP_928339.1 CDS Sama_2465 NC_008700.1 2971790 2972617 R KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; putative small-conductance mechanosensitive channel complement(2971790..2972617) Shewanella amazonensis SB2B 4604714 YP_928340.1 CDS Sama_2466 NC_008700.1 2972649 2973212 R KEGG: son:SO3339 OmpA family protein; OmpA family protein complement(2972649..2973212) Shewanella amazonensis SB2B 4604715 YP_928341.1 CDS Sama_2467 NC_008700.1 2973368 2973877 R KEGG: bur:Bcep18194_A5604 protein of unknown function DUF924; hypothetical protein complement(2973368..2973877) Shewanella amazonensis SB2B 4604716 YP_928342.1 CDS Sama_2469 NC_008700.1 2974744 2975304 R KEGG: son:SO3343 hypothetical protein; hypothetical protein complement(2974744..2975304) Shewanella amazonensis SB2B 4606041 YP_928343.1 CDS Sama_2470 NC_008700.1 2975496 2975825 D KEGG: she:Shewmr4_1201 hypothetical protein; hypothetical protein 2975496..2975825 Shewanella amazonensis SB2B 4604718 YP_928344.1 CDS Sama_2471 NC_008700.1 2975939 2976268 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 2975939..2976268 Shewanella amazonensis SB2B 4604719 YP_928345.1 CDS Sama_2472 NC_008700.1 2976271 2976840 D KEGG: son:SO3346 putative transcriptional regulator; putative transcriptional regulator 2976271..2976840 Shewanella amazonensis SB2B 4604720 YP_928346.1 CDS Sama_2473 NC_008700.1 2976840 2977259 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2976840..2977259 Shewanella amazonensis SB2B 4604721 YP_928347.1 CDS Sama_2474 NC_008700.1 2977327 2977869 R KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase complement(2977327..2977869) Shewanella amazonensis SB2B 4604722 YP_928348.1 CDS Sama_2475 NC_008700.1 2978070 2979182 R KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein PilU complement(2978070..2979182) Shewanella amazonensis SB2B 4604723 YP_928349.1 CDS Sama_2476 NC_008700.1 2979192 2980229 R KEGG: shm:Shewmr7_1265 twitching motility protein; twitching motility protein complement(2979192..2980229) Shewanella amazonensis SB2B 4604724 YP_928350.1 CDS Sama_2477 NC_008700.1 2980265 2980972 D KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 2980265..2980972 Shewanella amazonensis SB2B 4604725 YP_928351.1 CDS Sama_2478 NC_008700.1 2981064 2981879 D KEGG: son:SO3354 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2981064..2981879 Shewanella amazonensis SB2B 4604726 YP_928352.1 CDS Sama_2479 NC_008700.1 2981925 2982473 D KEGG: sdn:Sden_2684 protein of unknown function YGGT; hypothetical protein 2981925..2982473 Shewanella amazonensis SB2B 4604727 YP_928353.1 CDS Sama_2480 NC_008700.1 2982473 2982760 D KEGG: son:SO3356 hypothetical protein; hypothetical protein 2982473..2982760 Shewanella amazonensis SB2B 4604728 YP_928354.1 CDS Sama_2481 NC_008700.1 2982843 2983277 D KEGG: son:SO3357 hypothetical protein; hypothetical protein 2982843..2983277 Shewanella amazonensis SB2B 4604729 YP_928355.1 CDS Sama_2482 NC_008700.1 2983409 2984005 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 2983409..2984005 Shewanella amazonensis SB2B 4604730 YP_928356.1 CDS Sama_2483 NC_008700.1 2984015 2985154 D KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; oxygen-independent coproporphyrinogen III oxidase 2984015..2985154 Shewanella amazonensis SB2B 4604731 YP_928357.1 CDS Sama_2484 NC_008700.1 2985297 2987174 D KEGG: son:SO3361 hypothetical protein; hypothetical protein 2985297..2987174 Shewanella amazonensis SB2B 4604732 YP_928358.1 CDS Sama_2485 NC_008700.1 2987708 2988649 R KEGG: son:SO3363 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2987708..2988649) Shewanella amazonensis SB2B 4604733 YP_928359.1 CDS Sama_2486 NC_008700.1 2988972 2989784 R KEGG: son:SO3364 hypothetical protein; hypothetical protein complement(2988972..2989784) Shewanella amazonensis SB2B 4604734 YP_928360.1 CDS Sama_2487 NC_008700.1 2990074 2990988 R catalyzes the formation of glutamate from glutamine; glutaminase complement(2990074..2990988) Shewanella amazonensis SB2B 4604735 YP_928361.1 CDS Sama_2488 NC_008700.1 2990992 2991318 R KEGG: son:SO3366 hypothetical protein; hypothetical protein complement(2990992..2991318) Shewanella amazonensis SB2B 4604736 YP_928362.1 CDS trmB NC_008700.1 2991349 2992065 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(2991349..2992065) Shewanella amazonensis SB2B 4604737 YP_928363.1 CDS Sama_2490 NC_008700.1 2992315 2993421 D KEGG: shm:Shewmr7_1251 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 2992315..2993421 Shewanella amazonensis SB2B 4604738 YP_928364.1 CDS Sama_2491 NC_008700.1 2993425 2993700 D KEGG: hit:NTHI0920 hypothetical protein; hypothetical protein 2993425..2993700 Shewanella amazonensis SB2B 4604739 YP_928365.1 CDS Sama_2492 NC_008700.1 2994002 2994376 R hypothetical protein complement(2994002..2994376) Shewanella amazonensis SB2B 4604740 YP_928366.1 CDS Sama_2494 NC_008700.1 2995573 2996217 R KEGG: rru:Rru_A1243 cytochrome b561; cytochrome b561 complement(2995573..2996217) Shewanella amazonensis SB2B 4606042 YP_928367.1 CDS Sama_2495 NC_008700.1 2996364 2996855 D KEGG: cps:CPS_1945 hypothetical protein; response regulator receiver protein 2996364..2996855 Shewanella amazonensis SB2B 4604742 YP_928368.1 CDS Sama_2496 NC_008700.1 2996903 2997619 R KEGG: vpa:VPA0205 C factor cell-cell signaling protein; C factor cell-cell signaling protein complement(2996903..2997619) Shewanella amazonensis SB2B 4604743 YP_928369.1 CDS Sama_2497 NC_008700.1 2997619 2999328 R KEGG: vpa:VPA0204 hypothetical protein; hypothetical protein complement(2997619..2999328) Shewanella amazonensis SB2B 4604744 YP_928370.1 CDS Sama_2498 NC_008700.1 2999634 3000539 R KEGG: son:SO1194 protein-export membrane protein SecF; protein-export membrane protein SecF complement(2999634..3000539) Shewanella amazonensis SB2B 4604745 YP_928371.1 CDS Sama_2499 NC_008700.1 3000542 3002377 R KEGG: son:SO1193 protein-export membrane protein SecD; protein-export membrane protein SecD complement(3000542..3002377) Shewanella amazonensis SB2B 4604746 YP_928372.1 CDS Sama_2500 NC_008700.1 3002441 3002827 R hypothetical protein complement(3002441..3002827) Shewanella amazonensis SB2B 4604747 YP_928373.1 CDS Sama_2501 NC_008700.1 3003118 3003318 R hypothetical protein complement(3003118..3003318) Shewanella amazonensis SB2B 4604748 YP_928374.1 CDS Sama_2502 NC_008700.1 3003539 3005488 R KEGG: son:SO2323 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(3003539..3005488) Shewanella amazonensis SB2B 4604749 YP_928375.1 CDS carB NC_008700.1 3005923 3009153 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(3005923..3009153) Shewanella amazonensis SB2B 4604750 YP_928376.1 CDS Sama_2504 NC_008700.1 3009178 3010323 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3009178..3010323) Shewanella amazonensis SB2B 4604751 YP_928377.1 CDS Sama_2505 NC_008700.1 3010504 3011316 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(3010504..3011316) Shewanella amazonensis SB2B 4604752 YP_928378.1 CDS Sama_2506 NC_008700.1 3011370 3011987 R KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidyl-prolyl cis-trans isomerase FklB complement(3011370..3011987) Shewanella amazonensis SB2B 4604753 YP_928379.1 CDS Sama_2507 NC_008700.1 3012071 3012871 R KEGG: son:SO1137 hypothetical protein; hypothetical protein complement(3012071..3012871) Shewanella amazonensis SB2B 4604754 YP_928380.1 CDS Sama_2508 NC_008700.1 3012955 3013965 R KEGG: hch:HCH_00844 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; transcriptional regulator complement(3012955..3013965) Shewanella amazonensis SB2B 4604755 YP_928381.1 CDS Sama_2509 NC_008700.1 3014059 3014685 D KEGG: sdn:Sden_0739 glutathione S-transferase-like protein; glutathione S-transferase-like protein 3014059..3014685 Shewanella amazonensis SB2B 4604756 YP_928382.1 CDS Sama_2510 NC_008700.1 3014764 3015894 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(3014764..3015894) Shewanella amazonensis SB2B 4604757 YP_928383.1 CDS dnaK NC_008700.1 3015983 3017896 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3015983..3017896) Shewanella amazonensis SB2B 4604758 YP_928384.1 CDS Sama_2512 NC_008700.1 3018164 3019075 D KEGG: son:SO1125 integral membrane domain protein; integral membrane domain-containing protein 3018164..3019075 Shewanella amazonensis SB2B 4604759 YP_928385.1 CDS Sama_2513 NC_008700.1 3019125 3019748 R KEGG: ilo:IL0884 secreted protein containing internal repeats; hypothetical protein complement(3019125..3019748) Shewanella amazonensis SB2B 4604760 YP_928386.1 CDS Sama_2514 NC_008700.1 3019990 3020412 D KEGG: son:SO1123 hypothetical protein; hypothetical protein 3019990..3020412 Shewanella amazonensis SB2B 4604761 YP_928387.1 CDS proA NC_008700.1 3020498 3021760 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3020498..3021760) Shewanella amazonensis SB2B 4604762 YP_928388.1 CDS Sama_2516 NC_008700.1 3021760 3022899 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3021760..3022899) Shewanella amazonensis SB2B 4604763 YP_928389.1 CDS Sama_2517 NC_008700.1 3023065 3024354 R KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil permease family protein complement(3023065..3024354) Shewanella amazonensis SB2B 4604764 YP_928390.1 CDS Sama_2518 NC_008700.1 3025211 3026806 R KEGG: son:SO1117 cytosol aminopeptidase, putative; cytosol aminopeptidase complement(3025211..3026806) Shewanella amazonensis SB2B 4604765 YP_928391.1 CDS Sama_2519 NC_008700.1 3026955 3028415 D KEGG: son:SO1115 aminoacyl-histidine dipeptidase; Xaa-His dipeptidase 3026955..3028415 Shewanella amazonensis SB2B 4604766 YP_928392.1 CDS Sama_2520 NC_008700.1 3028542 3029450 R KEGG: pae:PA5189 probable transcriptional regulator; putative transcriptional regulator complement(3028542..3029450) Shewanella amazonensis SB2B 4604767 YP_928393.1 CDS Sama_2521 NC_008700.1 3029669 3030796 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 3029669..3030796 Shewanella amazonensis SB2B 4604768 YP_928394.1 CDS Sama_2522 NC_008700.1 3030832 3032535 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3030832..3032535 Shewanella amazonensis SB2B 4604769 YP_928395.1 CDS Sama_2523 NC_008700.1 3032704 3032955 D hypothetical protein 3032704..3032955 Shewanella amazonensis SB2B 4604770 YP_928396.1 CDS Sama_2524 NC_008700.1 3032987 3034423 D KEGG: gme:Gmet_0767 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 3032987..3034423 Shewanella amazonensis SB2B 4604771 YP_928397.1 CDS Sama_2525 NC_008700.1 3034500 3034916 D KEGG: son:SO3741.1 hypothetical protein; hypothetical protein 3034500..3034916 Shewanella amazonensis SB2B 4604772 YP_928398.1 CDS Sama_2526 NC_008700.1 3034996 3035997 R KEGG: eca:ECA3516 putative tRNA/rRNA methyltransferase; putative methyltransferase complement(3034996..3035997) Shewanella amazonensis SB2B 4604773 YP_928399.1 CDS Sama_2527 NC_008700.1 3036239 3037306 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3036239..3037306) Shewanella amazonensis SB2B 4604774 YP_928400.1 CDS Sama_2528 NC_008700.1 3037392 3039389 R KEGG: son:SO1112.1 hypothetical chemotactic transducer; putative methyl-accepting chemotaxis sensory transducer complement(3037392..3039389) Shewanella amazonensis SB2B 4604775 YP_928401.1 CDS Sama_2529 NC_008700.1 3039585 3040055 R KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin subunit 1 complement(3039585..3040055) Shewanella amazonensis SB2B 4604776 YP_928402.1 CDS Sama_2530 NC_008700.1 3040067 3040537 R KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin subunit 2 complement(3040067..3040537) Shewanella amazonensis SB2B 4604777 YP_928403.1 CDS Sama_2531 NC_008700.1 3040686 3041645 R KEGG: xcb:XC_0641 GGDEF family protein; diguanylate cyclase complement(3040686..3041645) Shewanella amazonensis SB2B 4604778 YP_928404.1 CDS Sama_2532 NC_008700.1 3041783 3042007 R KEGG: son:SO1110 hypothetical protein; hypothetical protein complement(3041783..3042007) Shewanella amazonensis SB2B 4604779 YP_928405.1 CDS Sama_2533 NC_008700.1 3042011 3043036 R KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; thiamin biosynthesis lipoprotein ApbE complement(3042011..3043036) Shewanella amazonensis SB2B 4604780 YP_928406.1 CDS Sama_2534 NC_008700.1 3043112 3044368 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3043112..3044368) Shewanella amazonensis SB2B 4604781 YP_928407.1 CDS Sama_2535 NC_008700.1 3044418 3045026 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3044418..3045026) Shewanella amazonensis SB2B 4604782 YP_928408.1 CDS Sama_2536 NC_008700.1 3045032 3045658 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3045032..3045658) Shewanella amazonensis SB2B 4604783 YP_928409.1 CDS Sama_2537 NC_008700.1 3045658 3046455 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3045658..3046455) Shewanella amazonensis SB2B 4604784 YP_928410.1 CDS Sama_2538 NC_008700.1 3046448 3047647 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3046448..3047647) Shewanella amazonensis SB2B 4604785 YP_928411.1 CDS Sama_2539 NC_008700.1 3047647 3048981 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3047647..3048981) Shewanella amazonensis SB2B 4604786 YP_928412.1 CDS Sama_2540 NC_008700.1 3049367 3051172 R KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; hypothetical protein complement(3049367..3051172) Shewanella amazonensis SB2B 4604787 YP_928413.1 CDS Sama_2541 NC_008700.1 3051290 3051799 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3051290..3051799) Shewanella amazonensis SB2B 4604788 YP_928414.1 CDS Sama_2542 NC_008700.1 3051884 3052975 R KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component complement(3051884..3052975) Shewanella amazonensis SB2B 4604789 YP_928415.1 CDS Sama_2543 NC_008700.1 3053009 3054370 R KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter; C4 dicarboxylate ABC transporter permease complement(3053009..3054370) Shewanella amazonensis SB2B 4604790 YP_928416.1 CDS Sama_2544 NC_008700.1 3054370 3054876 R KEGG: abo:ABO_2686 TRAP-type transport system, small permease component; TRAP-type transport system, small permease complement(3054370..3054876) Shewanella amazonensis SB2B 4604791 YP_928417.1 CDS Sama_2545 NC_008700.1 3055027 3055326 R KEGG: ppr:PBPRA0820 putative cell division protein BolA; putative cell division protein BolA complement(3055027..3055326) Shewanella amazonensis SB2B 4604792 YP_928418.1 CDS Sama_2546 NC_008700.1 3055382 3055909 R KEGG: ppr:PBPRB1268 hypothetical protein; hypothetical protein complement(3055382..3055909) Shewanella amazonensis SB2B 4604793 YP_928419.1 CDS Sama_2547 NC_008700.1 3056010 3056630 R KEGG: sdn:Sden_0979 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(3056010..3056630) Shewanella amazonensis SB2B 4604794 YP_928420.1 CDS Sama_2548 NC_008700.1 3056722 3057873 D KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 3056722..3057873 Shewanella amazonensis SB2B 4604795 YP_928421.1 CDS Sama_2549 NC_008700.1 3057983 3058663 R cofactor involved in the reduction of disulfides; glutaredoxin complement(3057983..3058663) Shewanella amazonensis SB2B 4604796 YP_928422.1 CDS Sama_2550 NC_008700.1 3058695 3059558 R KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein complement(3058695..3059558) Shewanella amazonensis SB2B 4604797 YP_928423.1 CDS Sama_2551 NC_008700.1 3059646 3060629 R KEGG: son:SO3808 hypothetical protein; hypothetical protein complement(3059646..3060629) Shewanella amazonensis SB2B 4604798 YP_928424.1 CDS Sama_2552 NC_008700.1 3060871 3061431 R KEGG: son:SO3810 OmpA-like transmembrane domain protein; OmpA-like transmembrane domain-containing protein complement(3060871..3061431) Shewanella amazonensis SB2B 4604799 YP_928425.1 CDS Sama_2553 NC_008700.1 3061520 3062134 D KEGG: son:SO3811 lipoprotein, putative; putative lipoprotein 3061520..3062134 Shewanella amazonensis SB2B 4604800 YP_928426.1 CDS Sama_2554 NC_008700.1 3062156 3062743 D KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase A 3062156..3062743 Shewanella amazonensis SB2B 4604801 YP_928427.1 CDS Sama_2555 NC_008700.1 3062809 3063135 D KEGG: son:SO3813 hypothetical protein; hypothetical protein 3062809..3063135 Shewanella amazonensis SB2B 4604802 YP_928428.1 CDS Sama_2556 NC_008700.1 3063265 3064665 D KEGG: son:SO3814 AmpG protein, putative; AmpG protein 3063265..3064665 Shewanella amazonensis SB2B 4604803 YP_928429.1 CDS Sama_2557 NC_008700.1 3064679 3065164 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3064679..3065164) Shewanella amazonensis SB2B 4604804 YP_928430.1 CDS Sama_2558 NC_008700.1 3065363 3065725 D KEGG: sdn:Sden_0769 hypothetical protein; hypothetical protein 3065363..3065725 Shewanella amazonensis SB2B 4604805 YP_928431.1 CDS Sama_2559 NC_008700.1 3065722 3066624 D KEGG: son:SO3817 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 3065722..3066624 Shewanella amazonensis SB2B 4604806 YP_928432.1 CDS Sama_2560 NC_008700.1 3066638 3067513 R KEGG: son:SO3822 hypothetical protein; hypothetical protein complement(3066638..3067513) Shewanella amazonensis SB2B 4604807 YP_928433.1 CDS Sama_2561 NC_008700.1 3067601 3068449 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3067601..3068449) Shewanella amazonensis SB2B 4604808 YP_928434.1 CDS Sama_2562 NC_008700.1 3068495 3069733 R KEGG: sdn:Sden_0924 protein of unknown function DUF819; hypothetical protein complement(3068495..3069733) Shewanella amazonensis SB2B 4604809 YP_928435.1 CDS Sama_2563 NC_008700.1 3069782 3070570 R KEGG: son:SO3829 hypothetical protein; hypothetical protein complement(3069782..3070570) Shewanella amazonensis SB2B 4604810 YP_928436.1 CDS Sama_2564 NC_008700.1 3070567 3070965 R KEGG: son:SO3830 hypothetical protein; hypothetical protein complement(3070567..3070965) Shewanella amazonensis SB2B 4604811 YP_928437.1 CDS Sama_2565 NC_008700.1 3071087 3071944 R KEGG: son:SO3832 hemK family protein; hemK family protein complement(3071087..3071944) Shewanella amazonensis SB2B 4604812 YP_928438.1 CDS prfA NC_008700.1 3071948 3073039 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3071948..3073039) Shewanella amazonensis SB2B 4604813 YP_928439.1 CDS hemA NC_008700.1 3073056 3074306 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(3073056..3074306) Shewanella amazonensis SB2B 4604814 YP_928440.1 CDS Sama_2568 NC_008700.1 3074536 3075159 D KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3074536..3075159 Shewanella amazonensis SB2B 4604815 YP_928441.1 CDS ipk NC_008700.1 3075156 3076007 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3075156..3076007 Shewanella amazonensis SB2B 4604816 YP_928442.1 CDS Sama_2570 NC_008700.1 3076087 3077034 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3076087..3077034 Shewanella amazonensis SB2B 4604817 YP_928443.1 CDS Sama_2571 NC_008700.1 3078197 3079288 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3078197..3079288) Shewanella amazonensis SB2B 4606007 YP_928444.1 CDS Sama_2572 NC_008700.1 3079326 3079913 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3079326..3079913) Shewanella amazonensis SB2B 4604819 YP_928445.1 CDS Sama_2573 NC_008700.1 3080124 3081392 R KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(3080124..3081392) Shewanella amazonensis SB2B 4604820 YP_928446.1 CDS Sama_2574 NC_008700.1 3081502 3081801 D KEGG: son:SO1182 hypothetical protein; hypothetical protein 3081502..3081801 Shewanella amazonensis SB2B 4604821 YP_928447.1 CDS Sama_2575 NC_008700.1 3081949 3083400 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3081949..3083400 Shewanella amazonensis SB2B 4604822 YP_928448.1 CDS Sama_2576 NC_008700.1 3083549 3084619 D KEGG: son:SO1180 PhoH family protein; PhoH family protein 3083549..3084619 Shewanella amazonensis SB2B 4604823 YP_928449.1 CDS Sama_2577 NC_008700.1 3084609 3085070 D KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3084609..3085070 Shewanella amazonensis SB2B 4604824 YP_928450.1 CDS Sama_2578 NC_008700.1 3085101 3085979 D KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; magnesium and cobalt efflux protein CorC 3085101..3085979 Shewanella amazonensis SB2B 4604825 YP_928451.1 CDS lnt NC_008700.1 3086040 3087575 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3086040..3087575 Shewanella amazonensis SB2B 4604826 YP_928452.1 CDS Sama_2580 NC_008700.1 3087745 3088986 D KEGG: pha:PSHAa0134 hypothetical protein; putative diguanylate phosphodiesterase 3087745..3088986 Shewanella amazonensis SB2B 4604827 YP_928453.1 CDS Sama_2581 NC_008700.1 3089001 3089501 R KEGG: sdn:Sden_0798 protein of unknown function DUF1451; hypothetical protein complement(3089001..3089501) Shewanella amazonensis SB2B 4604828 YP_928454.1 CDS leuS NC_008700.1 3089606 3092200 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3089606..3092200 Shewanella amazonensis SB2B 4604829 YP_928455.1 CDS Sama_2583 NC_008700.1 3092296 3092790 D KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B 3092296..3092790 Shewanella amazonensis SB2B 4604830 YP_928456.1 CDS Sama_2584 NC_008700.1 3092790 3093818 D KEGG: son:SO1172 DNA polymerase III delta subunit; DNA-directed DNA polymerase 3092790..3093818 Shewanella amazonensis SB2B 4604831 YP_928457.1 CDS Sama_2585 NC_008700.1 3093820 3094470 D KEGG: sdn:Sden_0794 nicotinate-nucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase 3093820..3094470 Shewanella amazonensis SB2B 4604832 YP_928458.1 CDS Sama_2586 NC_008700.1 3094543 3094869 D KEGG: son:SO1170 iojap domain protein; iojap domain-containing protein 3094543..3094869 Shewanella amazonensis SB2B 4604833 YP_928459.1 CDS Sama_2587 NC_008700.1 3094869 3095339 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3094869..3095339 Shewanella amazonensis SB2B 4604834 YP_928460.1 CDS Sama_2588 NC_008700.1 3095404 3097236 D KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase 3095404..3097236 Shewanella amazonensis SB2B 4604835 YP_928461.1 CDS Sama_2589 NC_008700.1 3097233 3098339 D KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA 3097233..3098339 Shewanella amazonensis SB2B 4604836 YP_928462.1 CDS Sama_2590 NC_008700.1 3098349 3099338 D KEGG: sdn:Sden_0853 lytic murein transglycosylase B; lytic murein transglycosylase B 3098349..3099338 Shewanella amazonensis SB2B 4604837 YP_928463.1 CDS Sama_2591 NC_008700.1 3099319 3100155 D KEGG: sdn:Sden_0852 rare lipoprotein A; rare lipoprotein A 3099319..3100155 Shewanella amazonensis SB2B 4604838 YP_928464.1 CDS Sama_2592 NC_008700.1 3100253 3101431 D KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3100253..3101431 Shewanella amazonensis SB2B 4604839 YP_928465.1 CDS Sama_2593 NC_008700.1 3101547 3101813 D KEGG: son:SO1163 hypothetical protein; hypothetical protein 3101547..3101813 Shewanella amazonensis SB2B 4604840 YP_928466.1 CDS lipB NC_008700.1 3101908 3102558 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3101908..3102558 Shewanella amazonensis SB2B 4604841 YP_928467.1 CDS Sama_2595 NC_008700.1 3102560 3103525 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3102560..3103525 Shewanella amazonensis SB2B 4604842 YP_928468.1 CDS Sama_2596 NC_008700.1 3103594 3104043 R KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3103594..3104043) Shewanella amazonensis SB2B 4604843 YP_928469.1 CDS Sama_2597 NC_008700.1 3104043 3104312 R hypothetical protein complement(3104043..3104312) Shewanella amazonensis SB2B 4604844 YP_928470.1 CDS Sama_2598 NC_008700.1 3104418 3104891 D KEGG: son:SO1158 Dps family protein; Dps family protein 3104418..3104891 Shewanella amazonensis SB2B 4604845 YP_928471.1 CDS Sama_2599 NC_008700.1 3105253 3106254 R KEGG: pha:PSHAb0175 conserved protein of unknown function ; putative lipoprotein; hypothetical protein complement(3105253..3106254) Shewanella amazonensis SB2B 4606008 YP_928472.1 CDS Sama_2600 NC_008700.1 3112729 3113580 R KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3112729..3113580) Shewanella amazonensis SB2B 4606013 YP_928473.1 CDS Sama_2601 NC_008700.1 3113665 3114120 D KEGG: son:SO3576 hypothetical protein; hypothetical protein 3113665..3114120 Shewanella amazonensis SB2B 4604848 YP_928474.1 CDS Sama_2602 NC_008700.1 3114224 3114670 R KEGG: she:Shewmr4_2466 transposase IS200-family protein; transposase IS200-family protein complement(3114224..3114670) Shewanella amazonensis SB2B 4604849 YP_928475.1 CDS Sama_2603 NC_008700.1 3114894 3117467 R KEGG: son:SO3577 clpB protein; clpB protein complement(3114894..3117467) Shewanella amazonensis SB2B 4604850 YP_928476.1 CDS Sama_2604 NC_008700.1 3117616 3118380 R KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein complement(3117616..3118380) Shewanella amazonensis SB2B 4604851 YP_928477.1 CDS Sama_2605 NC_008700.1 3118400 3119374 R KEGG: sdn:Sden_2863 pseudouridine synthase, RluD; pseudouridylate synthase complement(3118400..3119374) Shewanella amazonensis SB2B 4604852 YP_928478.1 CDS Sama_2606 NC_008700.1 3119410 3120261 D KEGG: son:SO3580 putative lipoprotein; putative lipoprotein 3119410..3120261 Shewanella amazonensis SB2B 4604853 YP_928479.1 CDS Sama_2607 NC_008700.1 3121171 3122796 D KEGG: sdn:Sden_0712 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 3121171..3122796 Shewanella amazonensis SB2B 4606017 YP_928480.1 CDS Sama_2608 NC_008700.1 3122925 3124499 R KEGG: sdn:Sden_1662 GGDEF domain protein; diguanylate cyclase complement(3122925..3124499) Shewanella amazonensis SB2B 4604855 YP_928481.1 CDS Sama_2609 NC_008700.1 3124600 3126465 R KEGG: son:SO3838 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(3124600..3126465) Shewanella amazonensis SB2B 4604856 YP_928482.1 CDS Sama_2610 NC_008700.1 3126737 3127690 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3126737..3127690 Shewanella amazonensis SB2B 4604857 YP_928483.1 CDS Sama_2611 NC_008700.1 3127773 3128327 D KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3127773..3128327 Shewanella amazonensis SB2B 4604858 YP_928484.1 CDS Sama_2612 NC_008700.1 3128324 3128863 D KEGG: son:SO3841 hypothetical protein; hypothetical protein 3128324..3128863 Shewanella amazonensis SB2B 4604859 YP_928485.1 CDS Sama_2613 NC_008700.1 3128860 3129789 D KEGG: son:SO3842 hypothetical protein; hypothetical protein 3128860..3129789 Shewanella amazonensis SB2B 4604860 YP_928486.1 CDS Sama_2614 NC_008700.1 3129843 3130535 R KEGG: sdn:Sden_1090 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu complement(3129843..3130535) Shewanella amazonensis SB2B 4604861 YP_928487.1 CDS Sama_2615 NC_008700.1 3130764 3132851 D KEGG: son:SO3844 peptidase, M13 family; endothelin-converting protein 1 3130764..3132851 Shewanella amazonensis SB2B 4604862 YP_928488.1 CDS Sama_2616 NC_008700.1 3132978 3133379 D KEGG: son:SO3847 hypothetical protein; hypothetical protein 3132978..3133379 Shewanella amazonensis SB2B 4604863 YP_928489.1 CDS Sama_2617 NC_008700.1 3133394 3133897 D KEGG: son:SO3848 hypothetical protein; hypothetical protein 3133394..3133897 Shewanella amazonensis SB2B 4604864 YP_928490.1 CDS Sama_2618 NC_008700.1 3134018 3136567 R KEGG: sdn:Sden_0738 TonB-dependent receptor; TonB-dependent receptor complement(3134018..3136567) Shewanella amazonensis SB2B 4604865 YP_928491.1 CDS Sama_2619 NC_008700.1 3136754 3137803 D KEGG: son:SO0914 hypothetical protein; hypothetical protein 3136754..3137803 Shewanella amazonensis SB2B 4604866 YP_928492.1 CDS Sama_2620 NC_008700.1 3137841 3138308 D KEGG: sdn:Sden_0737 protein of unknown function DUF1456; hypothetical protein 3137841..3138308 Shewanella amazonensis SB2B 4604867 YP_928493.1 CDS Sama_2621 NC_008700.1 3138612 3140300 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3138612..3140300 Shewanella amazonensis SB2B 4604868 YP_928494.1 CDS Sama_2622 NC_008700.1 3140366 3140800 R KEGG: son:SO3856 hypothetical protein; hypothetical protein complement(3140366..3140800) Shewanella amazonensis SB2B 4604869 YP_928495.1 CDS Sama_2623 NC_008700.1 3141040 3142920 D KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; cyclic nucleotide phosphodiesterase 3141040..3142920 Shewanella amazonensis SB2B 4604870 YP_928496.1 CDS Sama_2624 NC_008700.1 3142917 3143732 R KEGG: son:SO3860 hypothetical protein; hypothetical protein complement(3142917..3143732) Shewanella amazonensis SB2B 4604871 YP_928497.1 CDS Sama_2625 NC_008700.1 3143865 3145022 D KEGG: son:SO3861 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 3143865..3145022 Shewanella amazonensis SB2B 4604872 YP_928498.1 CDS Sama_2626 NC_008700.1 3145019 3145228 R KEGG: bcn:Bcen_6124 protein of unknown function DUF1458; hypothetical protein complement(3145019..3145228) Shewanella amazonensis SB2B 4604873 YP_928499.1 CDS Sama_2627 NC_008700.1 3145316 3147586 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3145316..3147586) Shewanella amazonensis SB2B 4604874 YP_928500.1 CDS Sama_2628 NC_008700.1 3147751 3148650 D KEGG: son:SO0817 transcriptional activator protein MetR; transcriptional activator protein MetR 3147751..3148650 Shewanella amazonensis SB2B 4604875 YP_928501.1 CDS Sama_2629 NC_008700.1 3148738 3149466 R KEGG: son:SO0816 hypothetical protein; putative signal transduction protein complement(3148738..3149466) Shewanella amazonensis SB2B 4604876 YP_928502.1 CDS Sama_2630 NC_008700.1 3149625 3150221 R KEGG: noc:Noc_1154 lipolytic enzyme, G-D-S-L; lipolytic protein G-D-S-L complement(3149625..3150221) Shewanella amazonensis SB2B 4604877 YP_928503.1 CDS Sama_2631 NC_008700.1 3150304 3152244 R KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor domain-containing protein complement(3150304..3152244) Shewanella amazonensis SB2B 4604878 YP_928504.1 CDS Sama_2632 NC_008700.1 3152549 3153175 R KEGG: sdn:Sden_0728 hypothetical protein; hypothetical protein complement(3152549..3153175) Shewanella amazonensis SB2B 4604879 YP_928505.1 CDS Sama_2633 NC_008700.1 3153223 3153567 R KEGG: cps:CPS_3606 hypothetical protein; hypothetical protein complement(3153223..3153567) Shewanella amazonensis SB2B 4604880 YP_928506.1 CDS Sama_2634 NC_008700.1 3153775 3155625 D KEGG: ppr:PBPRB0302 conserved hypothetical protein; hypothetical protein 3153775..3155625 Shewanella amazonensis SB2B 4604881 YP_928507.1 CDS Sama_2635 NC_008700.1 3155682 3157802 R KEGG: son:SO1278 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(3155682..3157802) Shewanella amazonensis SB2B 4604882 YP_928508.1 CDS Sama_2636 NC_008700.1 3157929 3159206 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(3157929..3159206) Shewanella amazonensis SB2B 4604883 YP_928509.1 CDS Sama_2637 NC_008700.1 3159228 3160670 R KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); succinate-semialdehyde dehydrogenase (NAD(P)(+)) complement(3159228..3160670) Shewanella amazonensis SB2B 4604884 YP_928510.1 CDS Sama_2638 NC_008700.1 3160726 3162012 R KEGG: son:SO1274 probable oxidoreductase; putative oxidoreductase complement(3160726..3162012) Shewanella amazonensis SB2B 4604885 YP_928511.1 CDS Sama_2639 NC_008700.1 3162181 3162996 R KEGG: sdn:Sden_3028 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3162181..3162996) Shewanella amazonensis SB2B 4604886 YP_928512.1 CDS Sama_2640 NC_008700.1 3162993 3163904 R KEGG: sdn:Sden_3029 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3162993..3163904) Shewanella amazonensis SB2B 4604887 YP_928513.1 CDS Sama_2641 NC_008700.1 3163901 3165037 R KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; polyamine ABC transporter ATP-binding protein complement(3163901..3165037) Shewanella amazonensis SB2B 4604888 YP_928514.1 CDS Sama_2642 NC_008700.1 3165155 3166255 R KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; polyamine ABC transporter periplasmic polyamine-binding protein complement(3165155..3166255) Shewanella amazonensis SB2B 4604889 YP_928515.1 CDS Sama_2643 NC_008700.1 3166428 3167810 R KEGG: cps:CPS_4663 aminotransferase, class III; putative aminotransferase complement(3166428..3167810) Shewanella amazonensis SB2B 4604890 YP_928516.1 CDS Sama_2644 NC_008700.1 3167857 3169212 R KEGG: sdn:Sden_3032 glutamate--ammonia ligase; glutamate--ammonia ligase complement(3167857..3169212) Shewanella amazonensis SB2B 4604891 YP_928517.1 CDS Sama_2645 NC_008700.1 3169216 3169980 R KEGG: son:SO1267 hypothetical glutamine amidotransferase; glutamine amidotransferase complement(3169216..3169980) Shewanella amazonensis SB2B 4604892 YP_928518.1 CDS Sama_2646 NC_008700.1 3170420 3170968 R KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator complement(3170420..3170968) Shewanella amazonensis SB2B 4604893 YP_928519.1 CDS Sama_2647 NC_008700.1 3171264 3172571 D KEGG: son:SO1264 hypothetical oxidoreductase; oxidoreductase 3171264..3172571 Shewanella amazonensis SB2B 4604894 YP_928520.1 CDS Sama_2648 NC_008700.1 3172632 3174128 R KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3172632..3174128) Shewanella amazonensis SB2B 4604895 YP_928521.1 CDS Sama_2649 NC_008700.1 3174516 3175856 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3174516..3175856 Shewanella amazonensis SB2B 4604896 YP_928522.1 CDS Sama_2650 NC_008700.1 3175898 3177388 D KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3175898..3177388 Shewanella amazonensis SB2B 4604897 YP_928523.1 CDS Sama_2651 NC_008700.1 3177428 3177793 D KEGG: son:SO3501 hypothetical protein; hypothetical protein 3177428..3177793 Shewanella amazonensis SB2B 4604898 YP_928524.1 CDS Sama_2652 NC_008700.1 3177902 3178630 D KEGG: son:SO3502 hypothetical protein; hypothetical protein 3177902..3178630 Shewanella amazonensis SB2B 4604899 YP_928525.1 CDS Sama_2653 NC_008700.1 3178688 3178870 R KEGG: shm:Shewmr7_1247 hypothetical protein; hypothetical protein complement(3178688..3178870) Shewanella amazonensis SB2B 4604900 YP_928526.1 CDS Sama_2654 NC_008700.1 3179015 3179359 D KEGG: son:SO3374 hypothetical protein; hypothetical protein 3179015..3179359 Shewanella amazonensis SB2B 4604901 YP_928527.1 CDS Sama_2655 NC_008700.1 3179729 3180625 D KEGG: tbd:Tbd_0710 hypothetical protein; hypothetical protein 3179729..3180625 Shewanella amazonensis SB2B 4604902 YP_928528.1 CDS Sama_2656 NC_008700.1 3180670 3181221 D KEGG: tbd:Tbd_0709 putative signal peptide protein; putative signal peptide protein 3180670..3181221 Shewanella amazonensis SB2B 4604903 YP_928529.1 CDS Sama_2657 NC_008700.1 3181222 3182043 D KEGG: son:SO1090 ApbE family protein, putative; ApbE family protein 3181222..3182043 Shewanella amazonensis SB2B 4604904 YP_928530.1 CDS Sama_2658 NC_008700.1 3182069 3182581 D KEGG: tcx:Tcr_0415 hypothetical protein; hypothetical protein 3182069..3182581 Shewanella amazonensis SB2B 4604905 YP_928531.1 CDS Sama_2659 NC_008700.1 3182901 3183461 R KEGG: cps:CPS_2089 hypothetical protein; hypothetical protein complement(3182901..3183461) Shewanella amazonensis SB2B 4604906 YP_928532.1 CDS Sama_2660 NC_008700.1 3183605 3184726 D KEGG: sdn:Sden_2522 AFG1-like ATPase; AFG1-like ATPase 3183605..3184726 Shewanella amazonensis SB2B 4604907 YP_928533.1 CDS Sama_2661 NC_008700.1 3184723 3186177 R KEGG: pha:PSHAa2185 amidohydrolase; amidohydrolase complement(3184723..3186177) Shewanella amazonensis SB2B 4604908 YP_928534.1 CDS Sama_2662 NC_008700.1 3186293 3187216 D KEGG: bbr:BB1160 putative LysR-family transcriptional regulator; LysR family transcriptional regulator 3186293..3187216 Shewanella amazonensis SB2B 4604909 YP_928535.1 CDS Sama_2663 NC_008700.1 3187156 3190041 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3187156..3190041) Shewanella amazonensis SB2B 4604910 YP_928536.1 CDS Sama_2664 NC_008700.1 3190258 3191235 D KEGG: son:SO3761 hypothetical protein; hypothetical protein 3190258..3191235 Shewanella amazonensis SB2B 4604911 YP_928537.1 CDS Sama_2665 NC_008700.1 3191256 3192158 D KEGG: son:SO3762 hypothetical protein; hypothetical protein 3191256..3192158 Shewanella amazonensis SB2B 4604912 YP_928538.1 CDS Sama_2666 NC_008700.1 3192162 3193877 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3192162..3193877 Shewanella amazonensis SB2B 4604913 YP_928539.1 CDS Sama_2667 NC_008700.1 3194014 3194427 D KEGG: son:SO3764 hypothetical protein; hypothetical protein 3194014..3194427 Shewanella amazonensis SB2B 4604914 YP_928540.1 CDS Sama_2668 NC_008700.1 3194439 3195128 D KEGG: sdn:Sden_0697 PspA/IM30; PspA/IM30 protein 3194439..3195128 Shewanella amazonensis SB2B 4604915 YP_928541.1 CDS Sama_2669 NC_008700.1 3195228 3195875 D KEGG: son:SO3766 hypothetical protein; hypothetical protein 3195228..3195875 Shewanella amazonensis SB2B 4604916 YP_928542.1 CDS Sama_2670 NC_008700.1 3195872 3196201 D KEGG: son:SO3767 hypothetical protein; hypothetical protein 3195872..3196201 Shewanella amazonensis SB2B 4604917 YP_928543.1 CDS Sama_2671 NC_008700.1 3196235 3197077 D KEGG: son:SO3768 ion transporter; ion transporter 3196235..3197077 Shewanella amazonensis SB2B 4604918 YP_928544.1 CDS Sama_2672 NC_008700.1 3197203 3198681 R KEGG: son:SO3769 hypothetical protein; hypothetical protein complement(3197203..3198681) Shewanella amazonensis SB2B 4604919 YP_928545.1 CDS Sama_2673 NC_008700.1 3198913 3199593 D KEGG: sdn:Sden_0692 protein of unknown function DUF47; hypothetical protein 3198913..3199593 Shewanella amazonensis SB2B 4604920 YP_928546.1 CDS Sama_2674 NC_008700.1 3199609 3200880 D KEGG: sdn:Sden_0691 phosphate transporter; phosphate transporter 3199609..3200880 Shewanella amazonensis SB2B 4604921 YP_928547.1 CDS Sama_2675 NC_008700.1 3201008 3201610 D KEGG: son:SO3772 SH3 domain protein; SH3 domain-containing protein 3201008..3201610 Shewanella amazonensis SB2B 4604922 YP_928548.1 CDS Sama_2676 NC_008700.1 3201868 3205044 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3201868..3205044 Shewanella amazonensis SB2B 4604923 YP_928549.1 CDS Sama_2677 NC_008700.1 3205164 3205340 D KEGG: son:SO3777 hypothetical protein; hypothetical protein 3205164..3205340 Shewanella amazonensis SB2B 4604924 YP_928550.1 CDS Sama_2678 NC_008700.1 3205426 3207153 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3205426..3207153) Shewanella amazonensis SB2B 4604925 YP_928551.1 CDS Sama_2679 NC_008700.1 3207150 3208943 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3207150..3208943) Shewanella amazonensis SB2B 4604926 YP_928552.1 CDS Sama_2680 NC_008700.1 3209177 3210439 R KEGG: son:SO3782 hypothetical protein; hypothetical protein complement(3209177..3210439) Shewanella amazonensis SB2B 4604927 YP_928553.1 CDS Sama_2681 NC_008700.1 3210736 3211917 D KEGG: sdn:Sden_3482 nitrite reductase, copper containing; nitrite reductase (NO-forming) 3210736..3211917 Shewanella amazonensis SB2B 4604928 YP_928554.1 CDS Sama_2682 NC_008700.1 3212088 3213005 D KEGG: sdn:Sden_3481 hypothetical protein; hypothetical protein 3212088..3213005 Shewanella amazonensis SB2B 4604929 YP_928555.1 CDS Sama_2683 NC_008700.1 3213020 3213679 D KEGG: sdn:Sden_3480 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3213020..3213679 Shewanella amazonensis SB2B 4604930 YP_928556.1 CDS Sama_2684 NC_008700.1 3213722 3214195 D KEGG: sdn:Sden_3479 protein of unknown function DUF461; hypothetical protein 3213722..3214195 Shewanella amazonensis SB2B 4604931 YP_928557.1 CDS Sama_2685 NC_008700.1 3214288 3215106 D catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase-like protein; KEGG: sdn:Sden_3444 cyclic nucleotide-binding; cAMP-binding protein 3214288..3215106 Shewanella amazonensis SB2B 4604932 YP_928558.1 CDS Sama_2686 NC_008700.1 3215152 3215679 R KEGG: son:SO1605 lipoprotein, putative; putative lipoprotein complement(3215152..3215679) Shewanella amazonensis SB2B 4604933 YP_928559.1 CDS Sama_2687 NC_008700.1 3215921 3217522 D KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3215921..3217522 Shewanella amazonensis SB2B 4604934 YP_928560.1 CDS Sama_2688 NC_008700.1 3217605 3218171 R KEGG: bbr:BB2475 hypothetical protein; hypothetical protein complement(3217605..3218171) Shewanella amazonensis SB2B 4604935 YP_928561.1 CDS Sama_2689 NC_008700.1 3218182 3218928 R KEGG: cps:CPS_4904 hypothetical protein; hypothetical protein complement(3218182..3218928) Shewanella amazonensis SB2B 4604936 YP_928562.1 CDS Sama_2690 NC_008700.1 3219020 3219586 D KEGG: mca:MCA2045 transcriptional regulator, MarR family; MarR family transcriptional regulator 3219020..3219586 Shewanella amazonensis SB2B 4604937 YP_928563.1 CDS Sama_2691 NC_008700.1 3219639 3219923 R hypothetical protein complement(3219639..3219923) Shewanella amazonensis SB2B 4604938 YP_928564.1 CDS Sama_2692 NC_008700.1 3220081 3220410 D KEGG: vpa:VPA1414 hypothetical protein; hypothetical protein 3220081..3220410 Shewanella amazonensis SB2B 4604939 YP_928565.1 CDS Sama_2693 NC_008700.1 3220543 3221337 D KEGG: cps:CPS_3143 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 3220543..3221337 Shewanella amazonensis SB2B 4604940 YP_928566.1 CDS Sama_2694 NC_008700.1 3221488 3221988 D KEGG: ppr:PBPRA1652 hypothetical protein; hypothetical protein 3221488..3221988 Shewanella amazonensis SB2B 4604941 YP_928567.1 CDS Sama_2695 NC_008700.1 3222217 3222984 D KEGG: pha:PSHAa2901 periplasmic peptidyl-prolyl cis-trans isomerase; periplasmic peptidyl-prolyl cis-trans isomerase 3222217..3222984 Shewanella amazonensis SB2B 4604942 YP_928568.1 CDS Sama_2696 NC_008700.1 3223473 3228692 D KEGG: son:SO4539 serine protease, subtilase family; serine protease 3223473..3228692 Shewanella amazonensis SB2B 4604943 YP_928569.1 CDS Sama_2697 NC_008700.1 3229016 3229861 D KEGG: sde:Sde_0548 PAS/PAC sensor signal transduction histidine kinase; hypothetical protein 3229016..3229861 Shewanella amazonensis SB2B 4604944 YP_928570.1 CDS Sama_2698 NC_008700.1 3229867 3230262 D hypothetical protein 3229867..3230262 Shewanella amazonensis SB2B 4604945 YP_928571.1 CDS Sama_2699 NC_008700.1 3230262 3230963 D KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory; response regulator receiver protein 3230262..3230963 Shewanella amazonensis SB2B 4604946 YP_928572.1 CDS Sama_2700 NC_008700.1 3230957 3232195 D KEGG: pha:PSHAa0854 sensory histidine kinase in two-component regulatory system with RstA; sensory histidine kinase in two-component regulatory system with RstA 3230957..3232195 Shewanella amazonensis SB2B 4604947 YP_928573.1 CDS Sama_2701 NC_008700.1 3232313 3232876 D KEGG: mst:Msp_0035 predicted peptidyl-prolyl cis-trans isomerase 1; peptidyl-prolyl cis-trans isomerase 3232313..3232876 Shewanella amazonensis SB2B 4604948 YP_928574.1 CDS Sama_2702 NC_008700.1 3233045 3234166 R KEGG: she:Shewmr4_2190 hypothetical protein; hypothetical protein complement(3233045..3234166) Shewanella amazonensis SB2B 4604949 YP_928575.1 CDS Sama_2703 NC_008700.1 3234252 3235112 R KEGG: son:SO0540 hypothetical protein; hypothetical protein complement(3234252..3235112) Shewanella amazonensis SB2B 4604950 YP_928576.1 CDS Sama_2704 NC_008700.1 3235328 3236488 D KEGG: hch:HCH_01597 sterol desaturase; sterol desaturase 3235328..3236488 Shewanella amazonensis SB2B 4604951 YP_928577.1 CDS Sama_2705 NC_008700.1 3236564 3238522 R KEGG: cps:CPS_2285 hypothetical protein; hypothetical protein complement(3236564..3238522) Shewanella amazonensis SB2B 4604952 YP_928578.1 CDS Sama_2706 NC_008700.1 3238559 3238990 R KEGG: cps:CPS_2286 hypothetical protein; hypothetical protein complement(3238559..3238990) Shewanella amazonensis SB2B 4604953 YP_928579.1 CDS Sama_2707 NC_008700.1 3239378 3239797 D KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; gamma-carboxymuconolactone decarboxylase subunit-like protein 3239378..3239797 Shewanella amazonensis SB2B 4604954 YP_928580.1 CDS Sama_2708 NC_008700.1 3239991 3241058 D KEGG: pca:Pcar_1086 conserved hypothetical signal peptide protein; putative signal peptide protein 3239991..3241058 Shewanella amazonensis SB2B 4604955 YP_928581.1 CDS Sama_2709 NC_008700.1 3241154 3242200 D KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase family protein 3241154..3242200 Shewanella amazonensis SB2B 4604956 YP_928582.1 CDS Sama_2710 NC_008700.1 3242219 3242575 R KEGG: rso:RSc0630 hypothetical protein; hypothetical protein complement(3242219..3242575) Shewanella amazonensis SB2B 4604957 YP_928583.1 CDS Sama_2711 NC_008700.1 3242612 3243124 R KEGG: yps:YPTB1990 hypothetical protein; hypothetical protein complement(3242612..3243124) Shewanella amazonensis SB2B 4604958 YP_928584.1 CDS Sama_2712 NC_008700.1 3243345 3244244 D KEGG: bcn:Bcen_5825 transcriptional regulator, AraC family; AraC family transcriptional regulator 3243345..3244244 Shewanella amazonensis SB2B 4604959 YP_928585.1 CDS Sama_2713 NC_008700.1 3244382 3246451 R KEGG: hch:HCH_03335 thiol:disulfide interchange protein; thiol:disulfide interchange protein complement(3244382..3246451) Shewanella amazonensis SB2B 4604960 YP_928586.1 CDS Sama_2714 NC_008700.1 3246555 3247646 R KEGG: hch:HCH_03334 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin complement(3246555..3247646) Shewanella amazonensis SB2B 4604961 YP_928587.1 CDS Sama_2715 NC_008700.1 3247878 3248696 D KEGG: bfs:BF2896 putative regulatory protein; putative regulatory protein 3247878..3248696 Shewanella amazonensis SB2B 4604962 YP_928588.1 CDS Sama_2716 NC_008700.1 3249614 3250489 R hypothetical protein complement(3249614..3250489) Shewanella amazonensis SB2B 4604963 YP_928589.1 CDS Sama_2717 NC_008700.1 3250593 3250952 D KEGG: rxy:Rxyl_0586 transcriptional regulator, XRE family; hypothetical protein 3250593..3250952 Shewanella amazonensis SB2B 4604964 YP_928590.1 CDS Sama_2718 NC_008700.1 3250949 3251749 D KEGG: xac:XAC1494 hypothetical protein; hypothetical protein 3250949..3251749 Shewanella amazonensis SB2B 4604965 YP_928591.1 CDS Sama_2719 NC_008700.1 3252165 3255053 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3252165..3255053) Shewanella amazonensis SB2B 4604966 YP_928592.1 CDS Sama_2720 NC_008700.1 3255155 3255544 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3255155..3255544) Shewanella amazonensis SB2B 4604967 YP_928593.1 CDS gcvT NC_008700.1 3255570 3256664 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3255570..3256664) Shewanella amazonensis SB2B 4604968 YP_928594.1 CDS Sama_2722 NC_008700.1 3256945 3258126 R KEGG: sdn:Sden_0832 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3256945..3258126) Shewanella amazonensis SB2B 4604969 YP_928595.1 CDS Sama_2723 NC_008700.1 3258150 3259445 R KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-octaprenyl-6-methoxyphenol hydroxylase complement(3258150..3259445) Shewanella amazonensis SB2B 4604970 YP_928596.1 CDS Sama_2724 NC_008700.1 3259476 3260051 R KEGG: sdn:Sden_0830 YgfB and YecA; YgfB/YecA protein complement(3259476..3260051) Shewanella amazonensis SB2B 4604971 YP_928597.1 CDS Sama_2725 NC_008700.1 3260301 3260609 D KEGG: sdn:Sden_0829 protein of unknown function DUF710; hypothetical protein 3260301..3260609 Shewanella amazonensis SB2B 4604972 YP_928598.1 CDS Sama_2726 NC_008700.1 3260851 3261537 D KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3260851..3261537 Shewanella amazonensis SB2B 4604973 YP_928599.1 CDS Sama_2727 NC_008700.1 3261614 3262528 D KEGG: ppr:PBPRB1899 hypothetical protein; hypothetical protein 3261614..3262528 Shewanella amazonensis SB2B 4604974 YP_928600.1 CDS Sama_2728 NC_008700.1 3262619 3263845 D KEGG: ppr:PBPRB1900 hypothetical protein; hypothetical protein 3262619..3263845 Shewanella amazonensis SB2B 4604975 YP_928601.1 CDS Sama_2729 NC_008700.1 3263947 3264408 D hypothetical protein 3263947..3264408 Shewanella amazonensis SB2B 4604976 YP_928602.1 CDS Sama_2730 NC_008700.1 3264656 3264850 D hypothetical protein 3264656..3264850 Shewanella amazonensis SB2B 4604977 YP_928603.1 CDS Sama_2731 NC_008700.1 3265052 3265831 D KEGG: psb:Psyr_0171 EAL; putative diguanylate phosphodiesterase 3265052..3265831 Shewanella amazonensis SB2B 4604978 YP_928604.1 CDS Sama_2732 NC_008700.1 3265982 3266551 R KEGG: sdn:Sden_1799 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(3265982..3266551) Shewanella amazonensis SB2B 4604979 YP_928605.1 CDS Sama_2733 NC_008700.1 3266587 3266994 R KEGG: sdn:Sden_1798 regulatory protein, MerR; MerR family transcriptional regulator complement(3266587..3266994) Shewanella amazonensis SB2B 4604980 YP_928606.1 CDS Sama_2734 NC_008700.1 3267020 3268066 R KEGG: vpa:VPA0296 putative oxidoreductase protein; putative oxidoreductase protein complement(3267020..3268066) Shewanella amazonensis SB2B 4604981 YP_928607.1 CDS Sama_2735 NC_008700.1 3268191 3269120 R KEGG: sdn:Sden_1821 protein of unknown function DUF808; hypothetical protein complement(3268191..3269120) Shewanella amazonensis SB2B 4604982 YP_928608.1 CDS Sama_2736 NC_008700.1 3269321 3269980 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3269321..3269980 Shewanella amazonensis SB2B 4604983 YP_928609.1 CDS Sama_2737 NC_008700.1 3270060 3271784 R KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(3270060..3271784) Shewanella amazonensis SB2B 4604984 YP_928610.1 CDS Sama_2738 NC_008700.1 3271872 3272600 R KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(3271872..3272600) Shewanella amazonensis SB2B 4604985 YP_928611.1 CDS Sama_2739 NC_008700.1 3272740 3273705 R KEGG: son:SO0950 integrase/recombinase XerD; integrase/recombinase XerD complement(3272740..3273705) Shewanella amazonensis SB2B 4604986 YP_928612.1 CDS Sama_2740 NC_008700.1 3273768 3275093 R KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein BrnQ complement(3273768..3275093) Shewanella amazonensis SB2B 4604987 YP_928613.1 CDS Sama_2741 NC_008700.1 3275568 3276311 D KEGG: son:SO0948 hypothetical protein; hypothetical protein 3275568..3276311 Shewanella amazonensis SB2B 4604988 YP_928614.1 CDS Sama_2742 NC_008700.1 3276377 3278218 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3276377..3278218 Shewanella amazonensis SB2B 4604989 YP_928615.1 CDS Sama_2743 NC_008700.1 3278415 3279641 D KEGG: son:SO0946 hypothetical protein; hypothetical protein 3278415..3279641 Shewanella amazonensis SB2B 4604990 YP_928616.1 CDS Sama_2744 NC_008700.1 3279641 3282844 D KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 3279641..3282844 Shewanella amazonensis SB2B 4604991 YP_928617.1 CDS Sama_2745 NC_008700.1 3282978 3283616 D KEGG: son:SO0944 hypothetical protein; hypothetical protein 3282978..3283616 Shewanella amazonensis SB2B 4604992 YP_928618.1 CDS Sama_2746 NC_008700.1 3283708 3285927 D KEGG: son:SO0943 sensory box protein, putative; sensory box protein 3283708..3285927 Shewanella amazonensis SB2B 4604993 YP_928619.1 CDS Sama_2747 NC_008700.1 3285917 3287320 R KEGG: son:SO0942 hypothetical protein; hypothetical protein complement(3285917..3287320) Shewanella amazonensis SB2B 4604994 YP_928620.1 CDS Sama_2748 NC_008700.1 3287410 3287925 R KEGG: son:SO0941 hypothetical protein; hypothetical protein complement(3287410..3287925) Shewanella amazonensis SB2B 4604995 YP_928621.1 CDS Sama_2749 NC_008700.1 3287918 3288673 R KEGG: son:SO0940 transcriptional regulator-related protein; putative transcriptional regulator CadC complement(3287918..3288673) Shewanella amazonensis SB2B 4604996 YP_928622.1 CDS Sama_2750 NC_008700.1 3289078 3289896 D KEGG: son:SO0939 cytochrome c, putative; cytochrome c 3289078..3289896 Shewanella amazonensis SB2B 4604997 YP_928623.1 CDS Sama_2751 NC_008700.1 3289906 3290433 D KEGG: son:SO0938 hypothetical protein; hypothetical protein 3289906..3290433 Shewanella amazonensis SB2B 4604998 YP_928624.1 CDS Sama_2752 NC_008700.1 3290523 3290936 R hypothetical protein complement(3290523..3290936) Shewanella amazonensis SB2B 4604999 YP_928625.1 CDS Sama_2753 NC_008700.1 3291091 3292563 R KEGG: son:SO0935 Na+/H+ antiporter; Na+/H+ antiporter complement(3291091..3292563) Shewanella amazonensis SB2B 4605000 YP_928626.1 CDS Sama_2754 NC_008700.1 3292754 3293497 R KEGG: son:SO0934 hypothetical protein; hypothetical protein complement(3292754..3293497) Shewanella amazonensis SB2B 4605001 YP_928627.1 CDS Sama_2755 NC_008700.1 3293618 3295111 R KEGG: rsp:RSP_2375 hypothetical protein; hypothetical protein complement(3293618..3295111) Shewanella amazonensis SB2B 4605002 YP_928628.1 CDS Sama_2756 NC_008700.1 3295251 3296318 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(3295251..3296318) Shewanella amazonensis SB2B 4605003 YP_928629.1 CDS pgk NC_008700.1 3296451 3297632 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3296451..3297632) Shewanella amazonensis SB2B 4605004 YP_928630.1 CDS Sama_2758 NC_008700.1 3297714 3298730 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3297714..3298730) Shewanella amazonensis SB2B 4605005 YP_928631.1 CDS Sama_2759 NC_008700.1 3298852 3300843 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3298852..3300843) Shewanella amazonensis SB2B 4605006 YP_928632.1 CDS Sama_2760 NC_008700.1 3301224 3302375 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3301224..3302375 Shewanella amazonensis SB2B 4605007 YP_928633.1 CDS Sama_2761 NC_008700.1 3302497 3302814 R KEGG: son:SO0927 hypothetical protein; hypothetical protein complement(3302497..3302814) Shewanella amazonensis SB2B 4605008 YP_928634.1 CDS Sama_2762 NC_008700.1 3302819 3304855 R KEGG: vvu:VV13056 FOG: EAL domain; putative diguanylate phosphodiesterase complement(3302819..3304855) Shewanella amazonensis SB2B 4605009 YP_928635.1 CDS Sama_2763 NC_008700.1 3304935 3305486 R KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase complement(3304935..3305486) Shewanella amazonensis SB2B 4605010 YP_928636.1 CDS Sama_2764 NC_008700.1 3305629 3306606 D KEGG: son:SO0925 GGDEF domain protein protein; diguanylate cyclase 3305629..3306606 Shewanella amazonensis SB2B 4605011 YP_928637.1 CDS Sama_2765 NC_008700.1 3306692 3307606 D KEGG: son:SO0925 GGDEF domain protein protein; hypothetical protein 3306692..3307606 Shewanella amazonensis SB2B 4605012 YP_928638.1 CDS Sama_2766 NC_008700.1 3307638 3307886 R KEGG: son:SO0924 hypothetical protein; hypothetical protein complement(3307638..3307886) Shewanella amazonensis SB2B 4605013 YP_928639.1 CDS Sama_2767 NC_008700.1 3307913 3308335 D KEGG: son:SO0923 hypothetical protein; hypothetical protein 3307913..3308335 Shewanella amazonensis SB2B 4605014 YP_928640.1 CDS Sama_2768 NC_008700.1 3308509 3309801 R KEGG: son:SO0922 proton/glutamate symporter; proton/glutamate symporter complement(3308509..3309801) Shewanella amazonensis SB2B 4605015 YP_928641.1 CDS Sama_2769 NC_008700.1 3309936 3310241 R KEGG: son:SO0921 hypothetical protein; hypothetical protein complement(3309936..3310241) Shewanella amazonensis SB2B 4605016 YP_928642.1 CDS Sama_2770 NC_008700.1 3310488 3310940 D KEGG: sdn:Sden_0864 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3310488..3310940 Shewanella amazonensis SB2B 4605017 YP_928643.1 CDS Sama_2771 NC_008700.1 3310994 3312388 R KEGG: yps:YPTB1647 L-serine dehydratase; L-serine ammonia-lyase complement(3310994..3312388) Shewanella amazonensis SB2B 4605018 YP_928644.1 CDS Sama_2772 NC_008700.1 3312408 3313724 R KEGG: shm:Shewmr7_3262 amino acid transporter, transmembrane; amino acid transporter, transmembrane complement(3312408..3313724) Shewanella amazonensis SB2B 4605019 YP_928645.1 CDS Sama_2773 NC_008700.1 3314064 3316622 R KEGG: son:SO0918 aculeacin A acylase; aculeacin A acylase complement(3314064..3316622) Shewanella amazonensis SB2B 4605020 YP_928646.1 CDS Sama_2774 NC_008700.1 3316862 3317425 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3316862..3317425 Shewanella amazonensis SB2B 4605021 YP_928647.1 CDS Sama_2775 NC_008700.1 3317499 3318437 D KEGG: son:SO0916 putative acetyltransferase; putative acetyltransferase 3317499..3318437 Shewanella amazonensis SB2B 4605022 YP_928648.1 CDS Sama_2776 NC_008700.1 3318543 3319580 D KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase family oxidoreductase 3318543..3319580 Shewanella amazonensis SB2B 4605023 YP_928649.1 CDS Sama_2777 NC_008700.1 3319713 3320942 D KEGG: son:SO3789 aminotransferase, class V; class V aminotransferase 3319713..3320942 Shewanella amazonensis SB2B 4605024 YP_928650.1 CDS Sama_2778 NC_008700.1 3320960 3321418 D KEGG: son:SO3790 hypothetical protein; hypothetical protein 3320960..3321418 Shewanella amazonensis SB2B 4605025 YP_928651.1 CDS Sama_2779 NC_008700.1 3321415 3322554 D KEGG: son:SO3791 renal dipeptidase family protein; dipeptidase 3321415..3322554 Shewanella amazonensis SB2B 4605026 YP_928652.1 CDS Sama_2780 NC_008700.1 3322665 3323534 R hypothetical protein complement(3322665..3323534) Shewanella amazonensis SB2B 4605027 YP_928653.1 CDS Sama_2781 NC_008700.1 3323531 3324292 R hypothetical protein complement(3323531..3324292) Shewanella amazonensis SB2B 4605028 YP_928654.1 CDS Sama_2782 NC_008700.1 3324591 3325520 R KEGG: sco:SCO6138 putative transmembrane protein; hypothetical protein complement(3324591..3325520) Shewanella amazonensis SB2B 4605029 YP_928655.1 CDS Sama_2783 NC_008700.1 3325845 3326768 R KEGG: sdn:Sden_2840 protein of unknown function DUF368; hypothetical protein complement(3325845..3326768) Shewanella amazonensis SB2B 4605030 YP_928656.1 CDS Sama_2784 NC_008700.1 3327053 3327529 D KEGG: sdn:Sden_2841 hypothetical protein; hypothetical protein 3327053..3327529 Shewanella amazonensis SB2B 4605031 YP_928657.1 CDS Sama_2785 NC_008700.1 3327580 3328335 R KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu complement(3327580..3328335) Shewanella amazonensis SB2B 4605032 YP_928658.1 CDS Sama_2786 NC_008700.1 3328347 3328973 R KEGG: son:SO3584 hypothetical protein; putative transcriptional regulator complement(3328347..3328973) Shewanella amazonensis SB2B 4605033 YP_928659.1 CDS Sama_2787 NC_008700.1 3329137 3329721 D KEGG: son:SO3585 azoreductase, putative; azoreductase 3329137..3329721 Shewanella amazonensis SB2B 4605034 YP_928660.1 CDS Sama_2788 NC_008700.1 3329749 3330132 D KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein; glyoxalase/dioxygenase superfamily protein 3329749..3330132 Shewanella amazonensis SB2B 4605035 YP_928661.1 CDS Sama_2789 NC_008700.1 3330173 3330601 D KEGG: son:SO3586 glyoxalase family protein; glyoxalase family protein 3330173..3330601 Shewanella amazonensis SB2B 4605036 YP_928662.1 CDS Sama_2790 NC_008700.1 3330555 3330977 R KEGG: vfi:VF1779 tellurite resistance protein TehB; hypothetical protein complement(3330555..3330977) Shewanella amazonensis SB2B 4605037 YP_928663.1 CDS Sama_2791 NC_008700.1 3331057 3331557 D KEGG: son:SO3587 hypothetical protein; hypothetical protein 3331057..3331557 Shewanella amazonensis SB2B 4605038 YP_928664.1 CDS Sama_2792 NC_008700.1 3331602 3332138 R KEGG: ppr:PBPRB0529 hypothetical acetyltransferase; acetyltransferase complement(3331602..3332138) Shewanella amazonensis SB2B 4605039 YP_928665.1 CDS Sama_2793 NC_008700.1 3332367 3332633 D KEGG: son:SO3591 hypothetical protein; hypothetical protein 3332367..3332633 Shewanella amazonensis SB2B 4605040 YP_928666.1 CDS Sama_2794 NC_008700.1 3332697 3333761 R KEGG: sdn:Sden_3016 (acyl-carrier-protein) S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase complement(3332697..3333761) Shewanella amazonensis SB2B 4605041 YP_928667.1 CDS Sama_2795 NC_008700.1 3333758 3336043 R KEGG: sdn:Sden_3017 transketolase, central region; transketolase, central region complement(3333758..3336043) Shewanella amazonensis SB2B 4605042 YP_928668.1 CDS Sama_2796 NC_008700.1 3336103 3337278 R KEGG: sdn:Sden_3018 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase-like protein complement(3336103..3337278) Shewanella amazonensis SB2B 4605043 YP_928669.1 CDS Sama_2797 NC_008700.1 3337461 3338297 D KEGG: sdn:Sden_3019 regulatory protein, LysR; regulatory protein LysR 3337461..3338297 Shewanella amazonensis SB2B 4605044 YP_928670.1 CDS Sama_2798 NC_008700.1 3338415 3339299 D KEGG: son:SO3592 putative outer membrane protein; putative outer membrane protein 3338415..3339299 Shewanella amazonensis SB2B 4605045 YP_928671.1 CDS Sama_2799 NC_008700.1 3339299 3339700 D KEGG: son:SO3593 hypothetical protein; hypothetical protein 3339299..3339700 Shewanella amazonensis SB2B 4605046 YP_928672.1 CDS Sama_2800 NC_008700.1 3339700 3340410 D KEGG: son:SO3594 transcriptional regulatory protein RstA, putative; response regulator receiver protein 3339700..3340410 Shewanella amazonensis SB2B 4605047 YP_928673.1 CDS Sama_2801 NC_008700.1 3340414 3341676 D KEGG: son:SO3595 sensor protein RstB, putative; sensor protein RstB 3340414..3341676 Shewanella amazonensis SB2B 4605048 YP_928674.1 CDS Sama_2802 NC_008700.1 3341723 3342082 R KEGG: son:SO3596 hypothetical protein; hypothetical protein complement(3341723..3342082) Shewanella amazonensis SB2B 4605049 YP_928675.1 CDS Sama_2803 NC_008700.1 3342175 3342702 D KEGG: son:SO3597 hypothetical protein; hypothetical protein 3342175..3342702 Shewanella amazonensis SB2B 4605050 YP_928676.1 CDS Sama_2804 NC_008700.1 3342858 3344330 R KEGG: son:SO3611 ATPase, AAA family; AAA ATPase complement(3342858..3344330) Shewanella amazonensis SB2B 4605051 YP_928677.1 CDS Sama_2805 NC_008700.1 3344416 3345561 R KEGG: son:SO3603 secretion protein, HlyD family; HlyD family secretion protein complement(3344416..3345561) Shewanella amazonensis SB2B 4605052 YP_928678.1 CDS Sama_2806 NC_008700.1 3345564 3345941 R KEGG: vfi:VFA0380 hypothetical protein; hypothetical protein complement(3345564..3345941) Shewanella amazonensis SB2B 4605053 YP_928679.1 CDS purT NC_008700.1 3346140 3347318 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3346140..3347318 Shewanella amazonensis SB2B 4605054 YP_928680.1 CDS Sama_2808 NC_008700.1 3347641 3348246 D KEGG: son:SO1188 hypothetical protein; hypothetical protein 3347641..3348246 Shewanella amazonensis SB2B 4605055 YP_928681.1 CDS Sama_2809 NC_008700.1 3348254 3348769 D KEGG: son:SO1189 lysozyme; hypothetical protein 3348254..3348769 Shewanella amazonensis SB2B 4605056 YP_928682.1 CDS Sama_2810 NC_008700.1 3348778 3349590 D KEGG: son:SO1190 hypothetical protein; hypothetical protein 3348778..3349590 Shewanella amazonensis SB2B 4605057 YP_928683.1 CDS Sama_2811 NC_008700.1 3349618 3350571 R KEGG: son:SO3631 glycerate dehydrogenase; glycerate dehydrogenase complement(3349618..3350571) Shewanella amazonensis SB2B 4605058 YP_928684.1 CDS Sama_2812 NC_008700.1 3350574 3351191 R KEGG: son:SO3632 hypothetical protein; hypothetical protein complement(3350574..3351191) Shewanella amazonensis SB2B 4605059 YP_928685.1 CDS djlA NC_008700.1 3351208 3351978 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(3351208..3351978) Shewanella amazonensis SB2B 4605060 YP_928686.1 CDS Sama_2814 NC_008700.1 3351988 3352668 R KEGG: sdn:Sden_2883 nucleotidyl transferase; nucleotidyl transferase complement(3351988..3352668) Shewanella amazonensis SB2B 4605061 YP_928687.1 CDS Sama_2815 NC_008700.1 3352665 3353711 R KEGG: son:SO3635 hypothetical phosphotransferase; phosphotransferase complement(3352665..3353711) Shewanella amazonensis SB2B 4605062 YP_928688.1 CDS Sama_2816 NC_008700.1 3353858 3356152 D KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 3353858..3356152 Shewanella amazonensis SB2B 4605063 YP_928689.1 CDS Sama_2817 NC_008700.1 3356275 3357579 D KEGG: son:SO3637 survival protein surA; survival protein surA 3356275..3357579 Shewanella amazonensis SB2B 4605064 YP_928690.1 CDS pdxA NC_008700.1 3357585 3358574 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3357585..3358574 Shewanella amazonensis SB2B 4605065 YP_928691.1 CDS ksgA NC_008700.1 3358584 3359387 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3358584..3359387 Shewanella amazonensis SB2B 4605066 YP_928692.1 CDS apaG NC_008700.1 3359415 3359801 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 3359415..3359801 Shewanella amazonensis SB2B 4605067 YP_928693.1 CDS apaH NC_008700.1 3359811 3360623 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3359811..3360623 Shewanella amazonensis SB2B 4605068 YP_928694.1 CDS Sama_2822 NC_008700.1 3360728 3362749 D KEGG: son:SO3642 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3360728..3362749 Shewanella amazonensis SB2B 4605069 YP_928695.1 CDS Sama_2823 NC_008700.1 3362978 3363385 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(3362978..3363385) Shewanella amazonensis SB2B 4605070 YP_928696.1 CDS Sama_2824 NC_008700.1 3363472 3363954 R KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase complement(3363472..3363954) Shewanella amazonensis SB2B 4605071 YP_928697.1 CDS Sama_2825 NC_008700.1 3363979 3364446 R KEGG: son:SO3647 hypothetical protein; hypothetical protein complement(3363979..3364446) Shewanella amazonensis SB2B 4605072 YP_928698.1 CDS Sama_2826 NC_008700.1 3364443 3365204 R KEGG: son:SO3648 hypothetical protein; hypothetical protein complement(3364443..3365204) Shewanella amazonensis SB2B 4605073 YP_928699.1 CDS obgE NC_008700.1 3365225 3366394 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3365225..3366394) Shewanella amazonensis SB2B 4605074 YP_928700.1 CDS rpmA NC_008700.1 3366537 3366791 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3366537..3366791) Shewanella amazonensis SB2B 4605075 YP_928701.1 CDS rplU NC_008700.1 3366806 3367117 R KEGG: sdn:Sden_2927 ribosomal protein L21; 50S ribosomal protein L21 complement(3366806..3367117) Shewanella amazonensis SB2B 4605076 YP_928702.1 CDS Sama_2830 NC_008700.1 3367372 3368373 D KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 3367372..3368373 Shewanella amazonensis SB2B 4605077 YP_928703.1 CDS Sama_2831 NC_008700.1 3368450 3369115 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(3368450..3369115) Shewanella amazonensis SB2B 4605078 YP_928704.1 CDS Sama_2832 NC_008700.1 3369295 3369615 D KEGG: son:SO3656 hypothetical protein; hypothetical protein 3369295..3369615 Shewanella amazonensis SB2B 4605079 YP_928705.1 CDS Sama_2833 NC_008700.1 3369678 3370304 R KEGG: son:SO3657 transporter, LysE family; amino acid transporter LysE complement(3369678..3370304) Shewanella amazonensis SB2B 4605080 YP_928706.1 CDS Sama_2834 NC_008700.1 3370684 3372108 D KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; sigma-54 dependent transcriptional regulator/sensory box protein 3370684..3372108 Shewanella amazonensis SB2B 4605081 YP_928707.1 CDS Sama_2835 NC_008700.1 3372337 3373875 D KEGG: sdn:Sden_2933 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3372337..3373875 Shewanella amazonensis SB2B 4605082 YP_928708.1 CDS Sama_2836 NC_008700.1 3374003 3374542 D KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3374003..3374542 Shewanella amazonensis SB2B 4605083 YP_928709.1 CDS Sama_2837 NC_008700.1 3374612 3375340 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3374612..3375340) Shewanella amazonensis SB2B 4605084 YP_928710.1 CDS Sama_2838 NC_008700.1 3375438 3377153 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3375438..3377153) Shewanella amazonensis SB2B 4605085 YP_928711.1 CDS Sama_2839 NC_008700.1 3377153 3378961 R KEGG: pha:PSHAa0154 sulfite reductase subunit alpha; sulfite reductase subunit alpha complement(3377153..3378961) Shewanella amazonensis SB2B 4605086 YP_928712.1 CDS pntA NC_008700.1 3379308 3380834 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3379308..3380834 Shewanella amazonensis SB2B 4605087 YP_928713.1 CDS pntB NC_008700.1 3380847 3382331 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3380847..3382331 Shewanella amazonensis SB2B 4605088 YP_928714.1 CDS Sama_2842 NC_008700.1 3383107 3383544 D KEGG: sde:Sde_1876 cold shock protein; hypothetical protein 3383107..3383544 Shewanella amazonensis SB2B 4605089 YP_928715.1 CDS Sama_2843 NC_008700.1 3383604 3383912 D KEGG: rfe:RF_0935 hypothetical protein; hypothetical protein 3383604..3383912 Shewanella amazonensis SB2B 4605090 YP_928716.1 CDS Sama_2844 NC_008700.1 3384008 3384415 D KEGG: dsy:DSY4340 hypothetical protein; hypothetical protein 3384008..3384415 Shewanella amazonensis SB2B 4605091 YP_928717.1 CDS Sama_2845 NC_008700.1 3384527 3384970 D hypothetical protein 3384527..3384970 Shewanella amazonensis SB2B 4605092 YP_928718.1 CDS Sama_2846 NC_008700.1 3385074 3386021 D KEGG: par:Psyc_1937 hypothetical protein; hypothetical protein 3385074..3386021 Shewanella amazonensis SB2B 4605093 YP_928719.1 CDS Sama_2847 NC_008700.1 3386120 3387403 R KEGG: cps:CPS_1258 putative MFS transporter family protein; putative MFS transporter family protein complement(3386120..3387403) Shewanella amazonensis SB2B 4605094 YP_928720.1 CDS Sama_2848 NC_008700.1 3387689 3388429 R KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM-like protein complement(3387689..3388429) Shewanella amazonensis SB2B 4605095 YP_928721.1 CDS Sama_2849 NC_008700.1 3388513 3389403 R KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3388513..3389403) Shewanella amazonensis SB2B 4605096 YP_928722.1 CDS Sama_2850 NC_008700.1 3389510 3389872 D KEGG: pat:Patl_2972 DoxX; DoxX protein 3389510..3389872 Shewanella amazonensis SB2B 4605097 YP_928723.1 CDS Sama_2851 NC_008700.1 3390084 3391622 D KEGG: son:SO1505 transporter, putative; transporter 3390084..3391622 Shewanella amazonensis SB2B 4605098 YP_928724.1 CDS Sama_2852 NC_008700.1 3391692 3392363 R hypothetical protein complement(3391692..3392363) Shewanella amazonensis SB2B 4605099 YP_928725.1 CDS Sama_2853 NC_008700.1 3392500 3392931 R KEGG: sdn:Sden_0976 UspA; hypothetical protein complement(3392500..3392931) Shewanella amazonensis SB2B 4605100 YP_928726.1 CDS Sama_2854 NC_008700.1 3392979 3393362 R KEGG: shm:Shewmr7_3149 hypothetical protein; hypothetical protein complement(3392979..3393362) Shewanella amazonensis SB2B 4605101 YP_928727.1 CDS Sama_2855 NC_008700.1 3393525 3394964 D KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; coniferyl aldehyde dehydrogenase 3393525..3394964 Shewanella amazonensis SB2B 4605102 YP_928728.1 CDS Sama_2856 NC_008700.1 3394977 3395561 D KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 3394977..3395561 Shewanella amazonensis SB2B 4605103 YP_928729.1 CDS Sama_2857 NC_008700.1 3395680 3396465 R KEGG: son:SO3685 curli production assembly/transport component CsgG, putative; curli production assembly/transport component CsgG complement(3395680..3396465) Shewanella amazonensis SB2B 4605104 YP_928730.1 CDS Sama_2858 NC_008700.1 3396462 3396851 R KEGG: son:SO3686 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF complement(3396462..3396851) Shewanella amazonensis SB2B 4605105 YP_928731.1 CDS Sama_2859 NC_008700.1 3396854 3397195 R KEGG: sdn:Sden_0969 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE complement(3396854..3397195) Shewanella amazonensis SB2B 4605106 YP_928732.1 CDS Sama_2860 NC_008700.1 3397431 3398744 R KEGG: sdn:Sden_2846 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein complement(3397431..3398744) Shewanella amazonensis SB2B 4605107 YP_928733.1 CDS Sama_2861 NC_008700.1 3398749 3400263 R KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; response regulator receiver protein complement(3398749..3400263) Shewanella amazonensis SB2B 4605108 YP_928734.1 CDS Sama_2862 NC_008700.1 3400256 3401473 R KEGG: sdn:Sden_2848 protein of unknown function DUF214; hypothetical protein complement(3400256..3401473) Shewanella amazonensis SB2B 4605109 YP_928735.1 CDS Sama_2863 NC_008700.1 3401483 3402790 R KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein complement(3401483..3402790) Shewanella amazonensis SB2B 4605110 YP_928736.1 CDS Sama_2864 NC_008700.1 3402800 3403492 R KEGG: sdn:Sden_2850 ABC transporter related; ABC transporter-like protein complement(3402800..3403492) Shewanella amazonensis SB2B 4605111 YP_928737.1 CDS Sama_2865 NC_008700.1 3403659 3404915 R KEGG: son:SO3694 HlyD family secretion protein; HlyD family secretion protein complement(3403659..3404915) Shewanella amazonensis SB2B 4605112 YP_928738.1 CDS Sama_2866 NC_008700.1 3405197 3405580 R KEGG: son:SO3708 hypothetical protein; hypothetical protein complement(3405197..3405580) Shewanella amazonensis SB2B 4605113 YP_928739.1 CDS Sama_2867 NC_008700.1 3405679 3406347 D KEGG: noc:Noc_1690 hypothetical protein; hypothetical protein 3405679..3406347 Shewanella amazonensis SB2B 4605114 YP_928740.1 CDS Sama_2868 NC_008700.1 3406378 3406824 R KEGG: pat:Patl_2439 hypothetical protein; hypothetical protein complement(3406378..3406824) Shewanella amazonensis SB2B 4605115 YP_928741.1 CDS Sama_2869 NC_008700.1 3406992 3407819 R KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter substrate-binding protein complement(3406992..3407819) Shewanella amazonensis SB2B 4605116 YP_928742.1 CDS Sama_2870 NC_008700.1 3407998 3409026 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3407998..3409026 Shewanella amazonensis SB2B 4605117 YP_928743.1 CDS Sama_2871 NC_008700.1 3409113 3410807 R KEGG: hch:HCH_00660 response regulator containing a CheY-like receiver domain and a GGDEF domain protein; response regulator complement(3409113..3410807) Shewanella amazonensis SB2B 4605118 YP_928744.1 CDS Sama_2872 NC_008700.1 3411139 3411537 D KEGG: vvy:VV1083 hypothetical protein; hypothetical protein 3411139..3411537 Shewanella amazonensis SB2B 4605119 YP_928745.1 CDS Sama_2873 NC_008700.1 3411621 3411833 R KEGG: cps:CPS_3455 hypothetical protein; hypothetical protein complement(3411621..3411833) Shewanella amazonensis SB2B 4605120 YP_928746.1 CDS Sama_2874 NC_008700.1 3411841 3412686 R KEGG: cps:CPS_3456 SPFH domain/Band 7 family protein; hypothetical protein complement(3411841..3412686) Shewanella amazonensis SB2B 4605121 YP_928747.1 CDS Sama_2875 NC_008700.1 3412890 3415091 R KEGG: ilo:IL2514 outer membrane protein; outer membrane protein complement(3412890..3415091) Shewanella amazonensis SB2B 4605122 YP_928748.1 CDS Sama_2876 NC_008700.1 3415427 3416368 D hypothetical protein 3415427..3416368 Shewanella amazonensis SB2B 4605123 YP_928749.1 CDS lysS NC_008700.1 3416440 3417942 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3416440..3417942) Shewanella amazonensis SB2B 4605124 YP_928750.1 CDS Sama_2878 NC_008700.1 3417962 3419056 R KEGG: sdn:Sden_3128 peptide chain release factor 2; peptide chain release factor 2 complement(3417962..3419056) Shewanella amazonensis SB2B 4605125 YP_928751.1 CDS Sama_2879 NC_008700.1 3419347 3420330 D KEGG: hch:HCH_00361 uncharacterized low-complexity protein; hypothetical protein 3419347..3420330 Shewanella amazonensis SB2B 4605126 YP_928752.1 CDS Sama_2880 NC_008700.1 3420502 3422178 R KEGG: son:SO0987 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(3420502..3422178) Shewanella amazonensis SB2B 4605127 YP_928753.1 CDS Sama_2881 NC_008700.1 3422310 3422846 R KEGG: son:SO3719 hypothetical protein; hypothetical protein complement(3422310..3422846) Shewanella amazonensis SB2B 4605128 YP_928754.1 CDS Sama_2882 NC_008700.1 3422843 3423379 R KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase complement(3422843..3423379) Shewanella amazonensis SB2B 4605129 YP_928755.1 CDS Sama_2883 NC_008700.1 3423579 3424817 D KEGG: sdn:Sden_0720 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3423579..3424817 Shewanella amazonensis SB2B 4605130 YP_928756.1 CDS Sama_2884 NC_008700.1 3424840 3425685 D KEGG: son:SO3722 hypothetical protein; hypothetical protein 3424840..3425685 Shewanella amazonensis SB2B 4605131 YP_928757.1 CDS Sama_2885 NC_008700.1 3425861 3426055 D KEGG: vch:VC1810 hypothetical protein; hypothetical protein 3425861..3426055 Shewanella amazonensis SB2B 4605132 YP_928758.1 CDS Sama_2886 NC_008700.1 3426623 3427300 D KEGG: dps:DP1920 hypothetical protein; hypothetical protein 3426623..3427300 Shewanella amazonensis SB2B 4605133 YP_928759.1 CDS Sama_2887 NC_008700.1 3427315 3428589 D KEGG: cps:CPS_2394 GGDEF domain protein protein; diguanylate cyclase 3427315..3428589 Shewanella amazonensis SB2B 4605134 YP_928760.1 CDS Sama_2888 NC_008700.1 3429678 3430274 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3429678..3430274) Shewanella amazonensis SB2B 4605135 YP_928761.1 CDS Sama_2889 NC_008700.1 3430297 3432048 R KEGG: ppr:PBPRA3309 putative sodium/sulfate symporter; putative sodium/sulfate symporter complement(3430297..3432048) Shewanella amazonensis SB2B 4605136 YP_928762.1 CDS Sama_2890 NC_008700.1 3432116 3433525 R KEGG: pha:PSHAa0211 ATP-sulfurylase subunit 1; sulfate adenylyltransferase complement(3432116..3433525) Shewanella amazonensis SB2B 4605137 YP_928763.1 CDS Sama_2891 NC_008700.1 3433525 3434433 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3433525..3434433) Shewanella amazonensis SB2B 4605138 YP_928764.1 CDS Sama_2892 NC_008700.1 3434479 3435288 R KEGG: sdn:Sden_0958 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(3434479..3435288) Shewanella amazonensis SB2B 4605139 YP_928765.1 CDS Sama_2893 NC_008700.1 3435649 3436533 D KEGG: sdn:Sden_0955 phospholipase A1; phospholipase A(1) 3435649..3436533 Shewanella amazonensis SB2B 4605140 YP_928766.1 CDS Sama_2894 NC_008700.1 3436548 3438191 D KEGG: son:SO3731 hypothetical protein; hypothetical protein 3436548..3438191 Shewanella amazonensis SB2B 4605141 YP_928767.1 CDS Sama_2895 NC_008700.1 3438459 3440168 R KEGG: son:SO3733 hypothetical protein; hypothetical protein complement(3438459..3440168) Shewanella amazonensis SB2B 4605142 YP_928768.1 CDS Sama_2896 NC_008700.1 3440784 3443387 R KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; putative TonB-dependent outer membrane receptor complement(3440784..3443387) Shewanella amazonensis SB2B 4605143 YP_928769.1 CDS Sama_2897 NC_008700.1 3443727 3445322 D KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; long-chain-fatty-acid--CoA ligase 3443727..3445322 Shewanella amazonensis SB2B 4605144 YP_928770.1 CDS Sama_2898 NC_008700.1 3445442 3446728 R KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; 4-hydroxybutyrate CoA-transferase complement(3445442..3446728) Shewanella amazonensis SB2B 4605145 YP_928771.1 CDS Sama_2899 NC_008700.1 3447126 3448109 D KEGG: son:SO1661 transcriptional regulator, LysR family; transcriptional regulator-like protein 3447126..3448109 Shewanella amazonensis SB2B 4605146 YP_928772.1 CDS Sama_2900 NC_008700.1 3448189 3449163 R KEGG: son:SO4571 transcriptional regulator, LysR family; hypothetical protein complement(3448189..3449163) Shewanella amazonensis SB2B 4605147 YP_928773.1 CDS Sama_2901 NC_008700.1 3449545 3450054 D hypothetical protein 3449545..3450054 Shewanella amazonensis SB2B 4605148 YP_928774.1 CDS Sama_2902 NC_008700.1 3450153 3450614 D KEGG: hdu:HD0347 nitrate reductase, cytochrome-C type protein; hypothetical protein 3450153..3450614 Shewanella amazonensis SB2B 4605149 YP_928775.1 CDS Sama_2903 NC_008700.1 3450625 3451317 D KEGG: hit:NTHI1227 NrfC, Fe-S-cluster-containing hydrogenase component 1; NrfC, Fe-S-cluster-containing hydrogenase component 1 3450625..3451317 Shewanella amazonensis SB2B 4605150 YP_928776.1 CDS Sama_2904 NC_008700.1 3451314 3452255 D KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; formate-dependent nitrite reductase complex subunit NrfD 3451314..3452255 Shewanella amazonensis SB2B 4605151 YP_928777.1 CDS Sama_2905 NC_008700.1 3453033 3454031 R KEGG: dsy:DSY4538 hypothetical protein; hypothetical protein complement(3453033..3454031) Shewanella amazonensis SB2B 4605152 YP_928778.1 CDS Sama_2906 NC_008700.1 3454079 3455068 R KEGG: son:SO1697 hypothetical protein; hypothetical protein complement(3454079..3455068) Shewanella amazonensis SB2B 4605153 YP_928779.1 CDS Sama_2907 NC_008700.1 3455692 3456714 R KEGG: sde:Sde_3020 hypothetical protein; hypothetical protein complement(3455692..3456714) Shewanella amazonensis SB2B 4605154 YP_928780.1 CDS Sama_2908 NC_008700.1 3456847 3458628 R KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; ABC transporter ATP-binding protein/permease complement(3456847..3458628) Shewanella amazonensis SB2B 4605155 YP_928781.1 CDS Sama_2909 NC_008700.1 3458741 3459832 D hypothetical protein 3458741..3459832 Shewanella amazonensis SB2B 4605156 YP_928782.1 CDS Sama_2910 NC_008700.1 3459837 3461318 R KEGG: son:SO3678 hypothetical protein; hypothetical protein complement(3459837..3461318) Shewanella amazonensis SB2B 4605157 YP_928783.1 CDS Sama_2911 NC_008700.1 3461315 3461665 R KEGG: son:SO3679 hypothetical protein; hypothetical protein complement(3461315..3461665) Shewanella amazonensis SB2B 4605158 YP_928784.1 CDS Sama_2912 NC_008700.1 3461840 3462370 D KEGG: sde:Sde_3048 hypothetical protein; hypothetical protein 3461840..3462370 Shewanella amazonensis SB2B 4605159 YP_928785.1 CDS Sama_2913 NC_008700.1 3462367 3463845 D KEGG: ilo:IL1563 hypothetical protein; membrane protein 3462367..3463845 Shewanella amazonensis SB2B 4605160 YP_928786.1 CDS Sama_2914 NC_008700.1 3463857 3464399 D KEGG: vpa:VPA0111 hypothetical protein; hypothetical protein 3463857..3464399 Shewanella amazonensis SB2B 4605161 YP_928787.1 CDS Sama_2915 NC_008700.1 3464523 3465335 D KEGG: sdn:Sden_3307 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3464523..3465335 Shewanella amazonensis SB2B 4605162 YP_928788.1 CDS Sama_2916 NC_008700.1 3465462 3466355 D KEGG: hch:HCH_04108 predicted permease, DMT superfamily; DMT family permease 3465462..3466355 Shewanella amazonensis SB2B 4605163 YP_928789.1 CDS Sama_2917 NC_008700.1 3466402 3469029 D KEGG: son:SO1059 aminopeptidase N; aminopeptidase N 3466402..3469029 Shewanella amazonensis SB2B 4605164 YP_928790.1 CDS Sama_2918 NC_008700.1 3469134 3470507 D KEGG: sdn:Sden_0469 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3469134..3470507 Shewanella amazonensis SB2B 4605165 YP_928791.1 CDS Sama_2919 NC_008700.1 3470807 3471580 R KEGG: eca:ECA1907 DeoR-family transcriptional regulator; DeoR family transcriptional regulator complement(3470807..3471580) Shewanella amazonensis SB2B 4605166 YP_928792.1 CDS Sama_2920 NC_008700.1 3471874 3473022 D KEGG: pfo:Pfl_3782 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3471874..3473022 Shewanella amazonensis SB2B 4605167 YP_928793.1 CDS Sama_2921 NC_008700.1 3473330 3474685 R KEGG: pat:Patl_2539 serine-type D-Ala-D-Ala carboxypeptidase; beta-lactamase class C-like protein complement(3473330..3474685) Shewanella amazonensis SB2B 4605168 YP_928794.1 CDS Sama_2922 NC_008700.1 3474807 3476954 R KEGG: tma:TM1189 hypothetical protein; P-loop ATPase-like protein complement(3474807..3476954) Shewanella amazonensis SB2B 4605169 YP_928795.1 CDS Sama_2923 NC_008700.1 3477626 3478192 R KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase complement(3477626..3478192) Shewanella amazonensis SB2B 4605170 YP_928796.1 CDS Sama_2924 NC_008700.1 3478408 3480177 R KEGG: son:SO0806 alkaline phosphatase, putative; alkaline phosphatase complement(3478408..3480177) Shewanella amazonensis SB2B 4605171 YP_928797.1 CDS Sama_2925 NC_008700.1 3480377 3480796 D KEGG: son:SO0805 CBS domain protein; hypothetical protein 3480377..3480796 Shewanella amazonensis SB2B 4605172 YP_928798.1 CDS Sama_2926 NC_008700.1 3480845 3481534 R KEGG: son:SO1048 hypothetical protein; hypothetical protein complement(3480845..3481534) Shewanella amazonensis SB2B 4605173 YP_928799.1 CDS Sama_2927 NC_008700.1 3481534 3481965 R KEGG: son:SO1047 holin-like protein; holin-like protein complement(3481534..3481965) Shewanella amazonensis SB2B 4605174 YP_928800.1 CDS Sama_2928 NC_008700.1 3482069 3482959 D KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3482069..3482959 Shewanella amazonensis SB2B 4605175 YP_928801.1 CDS Sama_2929 NC_008700.1 3483023 3483838 R KEGG: son:SO1045 hypothetical protein; hypothetical protein complement(3483023..3483838) Shewanella amazonensis SB2B 4605176 YP_928802.1 CDS Sama_2930 NC_008700.1 3483858 3484598 R KEGG: eba:ebA6078 hypothetical protein; hypothetical protein complement(3483858..3484598) Shewanella amazonensis SB2B 4605177 YP_928803.1 CDS Sama_2931 NC_008700.1 3484599 3484961 R KEGG: pae:PA1029 hypothetical protein; hypothetical protein complement(3484599..3484961) Shewanella amazonensis SB2B 4605178 YP_928804.1 CDS Sama_2932 NC_008700.1 3485204 3485857 D catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3485204..3485857 Shewanella amazonensis SB2B 4605179 YP_928805.1 CDS Sama_2933 NC_008700.1 3485997 3486647 D KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein; heat shock protein DnaJ-like protein 3485997..3486647 Shewanella amazonensis SB2B 4605180 YP_928806.1 CDS Sama_2934 NC_008700.1 3486807 3487553 D KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 3486807..3487553 Shewanella amazonensis SB2B 4605181 YP_928807.1 CDS Sama_2935 NC_008700.1 3487928 3489265 D KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter family protein 3487928..3489265 Shewanella amazonensis SB2B 4605182 YP_928808.1 CDS Sama_2936 NC_008700.1 3489296 3489988 D KEGG: son:SO1086 hypothetical protein; hypothetical protein 3489296..3489988 Shewanella amazonensis SB2B 4605183 YP_928809.1 CDS Sama_2937 NC_008700.1 3489985 3490749 D KEGG: sfr:Sfri_0572 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 3489985..3490749 Shewanella amazonensis SB2B 4605184 YP_928810.1 CDS Sama_2938 NC_008700.1 3491171 3493387 R KEGG: son:SO1075 hypothetical protein; hypothetical protein complement(3491171..3493387) Shewanella amazonensis SB2B 4605185 YP_928811.1 CDS Sama_2939 NC_008700.1 3493528 3494715 R KEGG: son:SO1074 tyrosine-specific transport protein, putative; tyrosine-specific transport protein complement(3493528..3494715) Shewanella amazonensis SB2B 4605186 YP_928812.1 CDS Sama_2940 NC_008700.1 3495193 3495753 D KEGG: son:SO1071 hypothetical protein; hypothetical protein 3495193..3495753 Shewanella amazonensis SB2B 4605187 YP_928813.1 CDS Sama_2941 NC_008700.1 3495842 3497308 R KEGG: son:SO1070 catalase; catalase complement(3495842..3497308) Shewanella amazonensis SB2B 4605188 YP_928814.1 CDS Sama_2942 NC_008700.1 3497573 3498019 R KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase complement(3497573..3498019) Shewanella amazonensis SB2B 4605189 YP_928815.1 CDS Sama_2943 NC_008700.1 3498182 3498421 R KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein complement(3498182..3498421) Shewanella amazonensis SB2B 4605190 YP_928816.1 CDS Sama_2944 NC_008700.1 3498463 3498900 R KEGG: son:SO1068 hypothetical protein; hypothetical protein complement(3498463..3498900) Shewanella amazonensis SB2B 4605191 YP_928817.1 CDS Sama_2945 NC_008700.1 3499049 3501646 R KEGG: son:SO1066 extracellular nuclease; extracellular nuclease complement(3499049..3501646) Shewanella amazonensis SB2B 4605192 YP_928818.1 CDS Sama_2946 NC_008700.1 3502428 3502862 D KEGG: son:SO0866 minor curlin subunit CsgB, putative; minor curlin subunit CsgB 3502428..3502862 Shewanella amazonensis SB2B 4605193 YP_928819.1 CDS Sama_2947 NC_008700.1 3502876 3504378 D KEGG: son:SO0865 hypothetical protein; hypothetical protein 3502876..3504378 Shewanella amazonensis SB2B 4605194 YP_928820.1 CDS Sama_2948 NC_008700.1 3504494 3505159 R KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; response regulator receiver protein complement(3504494..3505159) Shewanella amazonensis SB2B 4605195 YP_928821.1 CDS Sama_2949 NC_008700.1 3505670 3506899 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3505670..3506899 Shewanella amazonensis SB2B 4605196 YP_928822.1 CDS Sama_2950 NC_008700.1 3507032 3507997 D KEGG: son:SO0861 hypothetical protein; hypothetical protein 3507032..3507997 Shewanella amazonensis SB2B 4605197 YP_928823.1 CDS Sama_2951 NC_008700.1 3508091 3509113 R KEGG: son:SO0860 response regulator; response regulator receiver protein complement(3508091..3509113) Shewanella amazonensis SB2B 4605198 YP_928824.1 CDS Sama_2952 NC_008700.1 3509199 3514490 R KEGG: son:SO0859 sensory box histidine kinase/response regulator; sensory box histidine kinase/response regulator complement(3509199..3514490) Shewanella amazonensis SB2B 4605199 YP_928825.1 CDS Sama_2953 NC_008700.1 3514745 3516139 R KEGG: son:SO0858 sodium:alanine symporter family protein; sodium:alanine symporter family protein complement(3514745..3516139) Shewanella amazonensis SB2B 4605200 YP_928826.1 CDS Sama_2954 NC_008700.1 3516822 3517370 D KEGG: ppr:PBPRA0130 hypothetical protein; hypothetical protein 3516822..3517370 Shewanella amazonensis SB2B 4605201 YP_928827.1 CDS Sama_2955 NC_008700.1 3517550 3518302 D KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3517550..3518302 Shewanella amazonensis SB2B 4605202 YP_928828.1 CDS Sama_2956 NC_008700.1 3518305 3520923 D KEGG: son:SO0856 putative ABC transport system permease protein; putative ABC transport system permease 3518305..3520923 Shewanella amazonensis SB2B 4605203 YP_928829.1 CDS Sama_2957 NC_008700.1 3520925 3522127 D KEGG: son:SO0855 hypothetical protein; hypothetical protein 3520925..3522127 Shewanella amazonensis SB2B 4605204 YP_928830.1 CDS Sama_2958 NC_008700.1 3522321 3522686 D KEGG: son:SO3699.1 hypothetical protein; hypothetical protein 3522321..3522686 Shewanella amazonensis SB2B 4605205 YP_928831.1 CDS Sama_2959 NC_008700.1 3523469 3524821 D KEGG: ecs:ECs5257 hypothetical protein; hypothetical protein 3523469..3524821 Shewanella amazonensis SB2B 4605206 YP_928832.1 CDS Sama_2960 NC_008700.1 3524850 3525728 D KEGG: osa:P0694A04.9 putative myosin heavy chain-like protein; hypothetical protein 3524850..3525728 Shewanella amazonensis SB2B 4605207 YP_928833.1 CDS Sama_2961 NC_008700.1 3525771 3526076 R KEGG: cps:CPS_2742 ISCps7, transposase; hypothetical protein complement(3525771..3526076) Shewanella amazonensis SB2B 4605208 YP_928834.1 CDS Sama_2962 NC_008700.1 3526512 3526721 R KEGG: vvy:VVA0678 hypothetical protein; hypothetical protein complement(3526512..3526721) Shewanella amazonensis SB2B 4605209 YP_928835.1 CDS Sama_2963 NC_008700.1 3527153 3527365 R KEGG: sdn:Sden_0927 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein complement(3527153..3527365) Shewanella amazonensis SB2B 4605210 YP_928836.1 CDS Sama_2964 NC_008700.1 3527800 3528936 R KEGG: spn:SP1772 cell wall surface anchor family protein; hypothetical protein complement(3527800..3528936) Shewanella amazonensis SB2B 4605211 YP_928837.1 CDS Sama_2965 NC_008700.1 3529208 3530398 R KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase complement(3529208..3530398) Shewanella amazonensis SB2B 4605212 YP_928838.1 CDS Sama_2966 NC_008700.1 3530560 3531744 R KEGG: son:SO1148 hypothetical protein; hypothetical protein complement(3530560..3531744) Shewanella amazonensis SB2B 4605213 YP_928839.1 CDS Sama_2967 NC_008700.1 3531903 3533924 D KEGG: hch:HCH_06920 hypothetical protein; hypothetical protein 3531903..3533924 Shewanella amazonensis SB2B 4605214 YP_928840.1 CDS Sama_2968 NC_008700.1 3533934 3535064 D hypothetical protein 3533934..3535064 Shewanella amazonensis SB2B 4605215 YP_928841.1 CDS Sama_2969 NC_008700.1 3535165 3535839 R KEGG: sdn:Sden_0863 nitroreductase; nitroreductase complement(3535165..3535839) Shewanella amazonensis SB2B 4605216 YP_928842.1 CDS Sama_2970 NC_008700.1 3535999 3537672 D KEGG: tbd:Tbd_2693 putative diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 3535999..3537672 Shewanella amazonensis SB2B 4605217 YP_928843.1 CDS Sama_2971 NC_008700.1 3537747 3540086 R KEGG: son:SO0633 penicillin-binding protein 1B; peptidoglycan glycosyltransferase complement(3537747..3540086) Shewanella amazonensis SB2B 4605218 YP_928844.1 CDS Sama_2972 NC_008700.1 3540099 3542615 R KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB complement(3540099..3542615) Shewanella amazonensis SB2B 4605219 YP_928845.1 CDS Sama_2973 NC_008700.1 3542699 3544903 R KEGG: son:SO0628 GGDEF domain protein protein; diguanylate cyclase complement(3542699..3544903) Shewanella amazonensis SB2B 4605220 YP_928846.1 CDS Sama_2974 NC_008700.1 3544997 3545524 D KEGG: son:SO0627 putative 2'-5' RNA ligase; putative 2'-5' RNA ligase 3544997..3545524 Shewanella amazonensis SB2B 4605221 YP_928847.1 CDS Sama_2975 NC_008700.1 3545529 3546023 R KEGG: son:SO0877 acetyltransferase, GNAT family; acetyltransferase complement(3545529..3546023) Shewanella amazonensis SB2B 4605222 YP_928848.1 CDS Sama_2976 NC_008700.1 3546138 3547355 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3546138..3547355) Shewanella amazonensis SB2B 4605223 YP_928849.1 CDS Sama_2977 NC_008700.1 3547369 3547977 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3547369..3547977) Shewanella amazonensis SB2B 4605224 YP_928850.1 CDS Sama_2978 NC_008700.1 3547988 3548614 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3547988..3548614) Shewanella amazonensis SB2B 4605225 YP_928851.1 CDS Sama_2979 NC_008700.1 3548616 3549380 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3548616..3549380) Shewanella amazonensis SB2B 4605226 YP_928852.1 CDS Sama_2980 NC_008700.1 3549370 3550584 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3549370..3550584) Shewanella amazonensis SB2B 4605227 YP_928853.1 CDS Sama_2981 NC_008700.1 3550584 3551951 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3550584..3551951) Shewanella amazonensis SB2B 4605228 YP_928854.1 CDS Sama_2982 NC_008700.1 3553114 3553383 D KEGG: son:SO0849 napD protein; napD protein 3553114..3553383 Shewanella amazonensis SB2B 4605229 YP_928855.1 CDS Sama_2983 NC_008700.1 3553380 3555863 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3553380..3555863 Shewanella amazonensis SB2B 4605230 YP_928856.1 CDS napG NC_008700.1 3555904 3556629 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 3555904..3556629 Shewanella amazonensis SB2B 4605231 YP_928857.1 CDS napH NC_008700.1 3556626 3557537 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 3556626..3557537 Shewanella amazonensis SB2B 4605232 YP_928858.1 CDS Sama_2986 NC_008700.1 3557534 3557965 D KEGG: son:SO0845 cytochrome c-type protein NapB; cytochrome c-type protein NapB 3557534..3557965 Shewanella amazonensis SB2B 4605233 YP_928859.1 CDS Sama_2987 NC_008700.1 3558041 3558940 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(3558041..3558940) Shewanella amazonensis SB2B 4605234 YP_928860.1 CDS Sama_2988 NC_008700.1 3559083 3559709 D KEGG: son:SO2865 L-lysine exporter, putative; L-lysine exporter 3559083..3559709 Shewanella amazonensis SB2B 4605235 YP_928861.1 CDS Sama_2989 NC_008700.1 3559985 3561718 D KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 3559985..3561718 Shewanella amazonensis SB2B 4605236 YP_928862.1 CDS Sama_2990 NC_008700.1 3562175 3564217 D KEGG: son:SO3140.2 hypothetical protein; hypothetical protein 3562175..3564217 Shewanella amazonensis SB2B 4605237 YP_928863.1 CDS Sama_2991 NC_008700.1 3564615 3564992 D KEGG: sde:Sde_1353 TonB-dependent receptor; TonB-dependent receptor 3564615..3564992 Shewanella amazonensis SB2B 4605238 YP_928864.1 CDS mltA NC_008700.1 3565041 3566153 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3565041..3566153) Shewanella amazonensis SB2B 4605239 YP_928865.1 CDS Sama_2993 NC_008700.1 3566298 3567245 D KEGG: cvi:CV3218 probable translation initiation protein, SUA5/YciO/YrdC family; SUA5/YciO/YrdC family translation initiation protein 3566298..3567245 Shewanella amazonensis SB2B 4605240 YP_928866.1 CDS Sama_2994 NC_008700.1 3567330 3568184 R KEGG: son:SO0895 pirin family protein; pirin family protein complement(3567330..3568184) Shewanella amazonensis SB2B 4605241 YP_928867.1 CDS Sama_2995 NC_008700.1 3568280 3568477 R KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein complement(3568280..3568477) Shewanella amazonensis SB2B 4605242 YP_928868.1 CDS Sama_2996 NC_008700.1 3568613 3570520 D KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3568613..3570520 Shewanella amazonensis SB2B 4605243 YP_928869.1 CDS Sama_2997 NC_008700.1 3570577 3571023 D KEGG: sdn:Sden_3179 hypothetical protein; hypothetical protein 3570577..3571023 Shewanella amazonensis SB2B 4605244 YP_928870.1 CDS Sama_2998 NC_008700.1 3571165 3572856 R KEGG: son:SO0882 oxidoreductase, GMC family; GMC family oxidoreductase complement(3571165..3572856) Shewanella amazonensis SB2B 4605245 YP_928871.1 CDS Sama_2999 NC_008700.1 3572866 3573378 R KEGG: son:SO0881 hypothetical protein; hypothetical protein complement(3572866..3573378) Shewanella amazonensis SB2B 4605246 YP_928872.1 CDS Sama_3000 NC_008700.1 3573552 3574529 D KEGG: son:SO0880 hypothetical protein; hypothetical protein 3573552..3574529 Shewanella amazonensis SB2B 4605247 YP_928873.1 CDS Sama_3001 NC_008700.1 3574539 3574790 D KEGG: sdn:Sden_3187 protein of unknown function UPF0270; hypothetical protein 3574539..3574790 Shewanella amazonensis SB2B 4605248 YP_928874.1 CDS Sama_3002 NC_008700.1 3574880 3575767 D KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 3574880..3575767 Shewanella amazonensis SB2B 4605249 YP_928875.1 CDS Sama_3003 NC_008700.1 3576053 3576829 R KEGG: son:SO0625 hypothetical protein; hypothetical protein complement(3576053..3576829) Shewanella amazonensis SB2B 4605250 YP_928876.1 CDS Sama_3004 NC_008700.1 3577223 3577858 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3577223..3577858 Shewanella amazonensis SB2B 4605251 YP_928877.1 CDS Sama_3005 NC_008700.1 3577943 3578287 D KEGG: son:SO0623 hypothetical protein; hypothetical protein 3577943..3578287 Shewanella amazonensis SB2B 4605252 YP_928878.1 CDS Sama_3006 NC_008700.1 3578268 3578942 D KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; response regulator receiver protein 3578268..3578942 Shewanella amazonensis SB2B 4605253 YP_928879.1 CDS Sama_3007 NC_008700.1 3578939 3580276 D KEGG: son:SO0621 sensor histidine kinase; sensor histidine kinase 3578939..3580276 Shewanella amazonensis SB2B 4605254 YP_928880.1 CDS Sama_3008 NC_008700.1 3580353 3581150 R KEGG: son:SO0620 hypothetical protein; hypothetical protein complement(3580353..3581150) Shewanella amazonensis SB2B 4605255 YP_928881.1 CDS astD NC_008700.1 3581295 3582755 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(3581295..3582755) Shewanella amazonensis SB2B 4605256 YP_928882.1 CDS Sama_3010 NC_008700.1 3582765 3583784 R KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase complement(3582765..3583784) Shewanella amazonensis SB2B 4605257 YP_928883.1 CDS argD NC_008700.1 3583948 3585162 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3583948..3585162) Shewanella amazonensis SB2B 4605258 YP_928884.1 CDS Sama_3012 NC_008700.1 3585475 3586386 R KEGG: son:SO0616 esterase, putative; esterase complement(3585475..3586386) Shewanella amazonensis SB2B 4605259 YP_928885.1 CDS Sama_3013 NC_008700.1 3586447 3587643 R KEGG: son:SO0615 hypothetical protein; hypothetical protein complement(3586447..3587643) Shewanella amazonensis SB2B 4605260 YP_928886.1 CDS Sama_3014 NC_008700.1 3587752 3590226 R KEGG: son:SO0614 dipeptidyl peptidase IV, putative; dipeptidyl peptidase IV complement(3587752..3590226) Shewanella amazonensis SB2B 4605261 YP_928887.1 CDS Sama_3015 NC_008700.1 3590359 3591009 R KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; para-aminobenzoate synthase glutamine amidotransferase, component II complement(3590359..3591009) Shewanella amazonensis SB2B 4605262 YP_928888.1 CDS Sama_3016 NC_008700.1 3591042 3592199 D KEGG: fra:Francci3_2523 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 3591042..3592199 Shewanella amazonensis SB2B 4605263 YP_928889.1 CDS Sama_3017 NC_008700.1 3592245 3592703 R KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor complement(3592245..3592703) Shewanella amazonensis SB2B 4605264 YP_928890.1 CDS sspA NC_008700.1 3592703 3593332 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3592703..3593332) Shewanella amazonensis SB2B 4605265 YP_928891.1 CDS Sama_3019 NC_008700.1 3593427 3594125 R KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; ubiquinol-cytochrome c reductase cytochrome c1 subunit complement(3593427..3594125) Shewanella amazonensis SB2B 4605266 YP_928892.1 CDS Sama_3020 NC_008700.1 3594125 3595339 R KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; ubiquinol-cytochrome c reductase, cytochrome b complement(3594125..3595339) Shewanella amazonensis SB2B 4605267 YP_928893.1 CDS Sama_3021 NC_008700.1 3595339 3595929 R KEGG: sdn:Sden_3201 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol--cytochrome-c reductase complement(3595339..3595929) Shewanella amazonensis SB2B 4605268 YP_928894.1 CDS Sama_3022 NC_008700.1 3596256 3597182 R KEGG: son:SO0606 hflC protein; hflC protein complement(3596256..3597182) Shewanella amazonensis SB2B 4605269 YP_928895.1 CDS Sama_3023 NC_008700.1 3597186 3598319 R KEGG: son:SO0605 hflK protein; hflK protein complement(3597186..3598319) Shewanella amazonensis SB2B 4605270 YP_928896.1 CDS Sama_3024 NC_008700.1 3598351 3599658 R KEGG: son:SO0604 GTP-binding protein HflX; GTP-binding protein HflX complement(3598351..3599658) Shewanella amazonensis SB2B 4605271 YP_928897.1 CDS Sama_3025 NC_008700.1 3599691 3599966 R KEGG: son:SO0603 host factor-I protein; host factor-I protein complement(3599691..3599966) Shewanella amazonensis SB2B 4605272 YP_928898.1 CDS miaA NC_008700.1 3600050 3600970 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3600050..3600970) Shewanella amazonensis SB2B 4605273 YP_928899.1 CDS mutL NC_008700.1 3600972 3602924 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3600972..3602924) Shewanella amazonensis SB2B 4605274 YP_928900.1 CDS Sama_3028 NC_008700.1 3602939 3604246 R KEGG: sdn:Sden_3208 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3602939..3604246) Shewanella amazonensis SB2B 4605275 YP_928901.1 CDS Sama_3029 NC_008700.1 3604243 3604704 R KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein complement(3604243..3604704) Shewanella amazonensis SB2B 4605276 YP_928902.1 CDS Sama_3030 NC_008700.1 3604771 3606261 R KEGG: son:SO0598 YjeF protein; YjeF protein complement(3604771..3606261) Shewanella amazonensis SB2B 4605277 YP_928903.1 CDS Sama_3031 NC_008700.1 3606713 3607168 R KEGG: son:SO0595 hypothetical protein; hypothetical protein complement(3606713..3607168) Shewanella amazonensis SB2B 4605278 YP_928904.1 CDS Sama_3032 NC_008700.1 3608130 3608675 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3608130..3608675) Shewanella amazonensis SB2B 4606022 YP_928905.1 CDS Sama_3033 NC_008700.1 3608786 3609841 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3608786..3609841 Shewanella amazonensis SB2B 4605280 YP_928906.1 CDS psd NC_008700.1 3609878 3610741 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3609878..3610741 Shewanella amazonensis SB2B 4605281 YP_928907.1 CDS Sama_3035 NC_008700.1 3610741 3611622 D KEGG: cps:CPS_3514 membrane protein; membrane protein 3610741..3611622 Shewanella amazonensis SB2B 4605282 YP_928908.1 CDS Sama_3036 NC_008700.1 3611651 3614893 D KEGG: son:SO0588 transporter, putative; transporter 3611651..3614893 Shewanella amazonensis SB2B 4605283 YP_928909.1 CDS Sama_3037 NC_008700.1 3614908 3615630 D KEGG: sdn:Sden_3215 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3614908..3615630 Shewanella amazonensis SB2B 4605284 YP_928910.1 CDS Sama_3038 NC_008700.1 3615661 3615993 R KEGG: vfi:VF1559 hypothetical protein; hypothetical protein complement(3615661..3615993) Shewanella amazonensis SB2B 4605285 YP_928911.1 CDS Sama_3039 NC_008700.1 3616048 3616974 D KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase family protein 3616048..3616974 Shewanella amazonensis SB2B 4605286 YP_928912.1 CDS Sama_3040 NC_008700.1 3617252 3617443 D KEGG: son:SO0583 bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin 3617252..3617443 Shewanella amazonensis SB2B 4605287 YP_928913.1 CDS Sama_3041 NC_008700.1 3617593 3619863 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3617593..3619863) Shewanella amazonensis SB2B 4605288 YP_928914.1 CDS Sama_3042 NC_008700.1 3619860 3621035 R KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase complement(3619860..3621035) Shewanella amazonensis SB2B 4605289 YP_928915.1 CDS Sama_3043 NC_008700.1 3621035 3622921 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3621035..3622921) Shewanella amazonensis SB2B 4605290 YP_928916.1 CDS Sama_3044 NC_008700.1 3622977 3623552 R KEGG: son:SO3900 hypothetical protein; hypothetical protein complement(3622977..3623552) Shewanella amazonensis SB2B 4605291 YP_928917.1 CDS Sama_3045 NC_008700.1 3623581 3624420 R KEGG: son:SO3901 lacZ expression regulator; lacZ expression regulator complement(3623581..3624420) Shewanella amazonensis SB2B 4605292 YP_928918.1 CDS Sama_3046 NC_008700.1 3624436 3624855 R KEGG: son:SO3902 hypothetical protein; hypothetical protein complement(3624436..3624855) Shewanella amazonensis SB2B 4605293 YP_928919.1 CDS Sama_3047 NC_008700.1 3624867 3625481 R KEGG: son:SO3903 ADP-ribose pyrophosphatase; ADP-ribose diphosphatase complement(3624867..3625481) Shewanella amazonensis SB2B 4605294 YP_928920.1 CDS tolC NC_008700.1 3625719 3627017 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3625719..3627017 Shewanella amazonensis SB2B 4605295 YP_928921.1 CDS Sama_3049 NC_008700.1 3627076 3627816 R KEGG: son:SO3905 hypothetical protein; hypothetical protein complement(3627076..3627816) Shewanella amazonensis SB2B 4605296 YP_928922.1 CDS Sama_3050 NC_008700.1 3627819 3628790 R KEGG: son:SO3906 hypothetical protein; hypothetical protein complement(3627819..3628790) Shewanella amazonensis SB2B 4605297 YP_928923.1 CDS Sama_3051 NC_008700.1 3628805 3629284 R KEGG: sfr:Sfri_3335 protein of unknown function DUF461; hypothetical protein complement(3628805..3629284) Shewanella amazonensis SB2B 4605298 YP_928924.1 CDS Sama_3052 NC_008700.1 3629316 3630056 D KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein 3629316..3630056 Shewanella amazonensis SB2B 4605299 YP_928925.1 CDS Sama_3053 NC_008700.1 3630131 3630328 R KEGG: son:SO3909 hypothetical protein; hypothetical protein complement(3630131..3630328) Shewanella amazonensis SB2B 4605300 YP_928926.1 CDS Sama_3054 NC_008700.1 3630465 3630734 R hypothetical protein complement(3630465..3630734) Shewanella amazonensis SB2B 4605301 YP_928927.1 CDS Sama_3055 NC_008700.1 3630940 3631920 R KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A complement(3630940..3631920) Shewanella amazonensis SB2B 4605302 YP_928928.1 CDS Sama_3056 NC_008700.1 3632112 3632576 D KEGG: son:SO3915 putative chemotaxis protein CheX; putative chemotaxis protein CheX 3632112..3632576 Shewanella amazonensis SB2B 4605303 YP_928929.1 CDS alr NC_008700.1 3632624 3633718 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3632624..3633718) Shewanella amazonensis SB2B 4605304 YP_928930.1 CDS Sama_3058 NC_008700.1 3633749 3635155 R KEGG: son:SO3917 replicative DNA helicase; replicative DNA helicase complement(3633749..3635155) Shewanella amazonensis SB2B 4605305 YP_928931.1 CDS Sama_3059 NC_008700.1 3635277 3637466 D KEGG: son:SO3918 hypothetical protein; hypothetical protein 3635277..3637466 Shewanella amazonensis SB2B 4605306 YP_928932.1 CDS Sama_3060 NC_008700.1 3637669 3640587 D KEGG: pat:Patl_1148 TonB-dependent receptor, plug; TonB-dependent receptor, plug 3637669..3640587 Shewanella amazonensis SB2B 4605307 YP_928933.1 CDS rplI NC_008700.1 3640832 3641281 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3640832..3641281) Shewanella amazonensis SB2B 4605308 YP_928934.1 CDS rpsR NC_008700.1 3641322 3641549 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3641322..3641549) Shewanella amazonensis SB2B 4605309 YP_928935.1 CDS Sama_3063 NC_008700.1 3641561 3641851 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(3641561..3641851) Shewanella amazonensis SB2B 4605310 YP_928936.1 CDS rpsF NC_008700.1 3641876 3642283 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3641876..3642283) Shewanella amazonensis SB2B 4605311 YP_928937.1 CDS Sama_3065 NC_008700.1 3642507 3643253 D KEGG: son:SO3931 putative salt-induced outer membrane protein; putative salt-induced outer membrane protein 3642507..3643253 Shewanella amazonensis SB2B 4605312 YP_928938.1 CDS Sama_3066 NC_008700.1 3643340 3644062 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(3643340..3644062) Shewanella amazonensis SB2B 4605313 YP_928939.1 CDS Sama_3067 NC_008700.1 3644081 3646507 R KEGG: son:SO3935 ribonuclease R; exoribonuclease II complement(3644081..3646507) Shewanella amazonensis SB2B 4605314 YP_928940.1 CDS Sama_3068 NC_008700.1 3646547 3647161 R KEGG: son:SO3936 sodium-type flagellar protein MotX; sodium-type flagellar protein MotX complement(3646547..3647161) Shewanella amazonensis SB2B 4605315 YP_928941.1 CDS Sama_3069 NC_008700.1 3647279 3648574 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3647279..3648574) Shewanella amazonensis SB2B 4605316 YP_928942.1 CDS rpsI NC_008700.1 3648923 3649315 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3648923..3649315) Shewanella amazonensis SB2B 4605317 YP_928943.1 CDS rplM NC_008700.1 3649330 3649758 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3649330..3649758) Shewanella amazonensis SB2B 4605318 YP_928944.1 CDS Sama_3072 NC_008700.1 3650039 3651148 R KEGG: son:SO3941 hypothetical protein; hypothetical protein complement(3650039..3651148) Shewanella amazonensis SB2B 4605319 YP_928945.1 CDS Sama_3073 NC_008700.1 3651391 3652740 D KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; serine protease 3651391..3652740 Shewanella amazonensis SB2B 4605320 YP_928946.1 CDS Sama_3074 NC_008700.1 3652836 3653906 D KEGG: son:SO3943 protease DegS; protease DegS 3652836..3653906 Shewanella amazonensis SB2B 4605321 YP_928947.1 CDS Sama_3075 NC_008700.1 3654274 3655530 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3654274..3655530) Shewanella amazonensis SB2B 4605322 YP_928948.1 CDS Sama_3076 NC_008700.1 3655545 3655802 R KEGG: sdn:Sden_0501 BolA-like protein; BolA-like protein complement(3655545..3655802) Shewanella amazonensis SB2B 4605323 YP_928949.1 CDS Sama_3077 NC_008700.1 3655826 3656116 R KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein complement(3655826..3656116) Shewanella amazonensis SB2B 4605324 YP_928950.1 CDS Sama_3078 NC_008700.1 3656113 3656751 R KEGG: son:SO3951 hypothetical protein; hypothetical protein complement(3656113..3656751) Shewanella amazonensis SB2B 4605325 YP_928951.1 CDS Sama_3079 NC_008700.1 3656766 3657236 R KEGG: son:SO3952 mce-related protein; mce-like protein complement(3656766..3657236) Shewanella amazonensis SB2B 4605326 YP_928952.1 CDS Sama_3080 NC_008700.1 3657277 3658059 R KEGG: son:SO3953 putative membrane protein; hypothetical protein complement(3657277..3658059) Shewanella amazonensis SB2B 4605327 YP_928953.1 CDS Sama_3081 NC_008700.1 3658046 3658858 R KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter ATP-binding protein complement(3658046..3658858) Shewanella amazonensis SB2B 4605328 YP_928954.1 CDS Sama_3082 NC_008700.1 3659041 3660003 D KEGG: sdn:Sden_0495 K+-dependent Na+/Ca+ exchanger related-protein; K+-dependent Na+/Ca+ exchanger-like protein 3659041..3660003 Shewanella amazonensis SB2B 4605329 YP_928955.1 CDS Sama_3083 NC_008700.1 3660047 3661024 D KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; arabinose-5-phosphate isomerase 3660047..3661024 Shewanella amazonensis SB2B 4605330 YP_928956.1 CDS Sama_3084 NC_008700.1 3661024 3661572 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3661024..3661572 Shewanella amazonensis SB2B 4605331 YP_928957.1 CDS Sama_3085 NC_008700.1 3661569 3662126 D KEGG: son:SO3958 hypothetical protein; hypothetical protein 3661569..3662126 Shewanella amazonensis SB2B 4605332 YP_928958.1 CDS Sama_3086 NC_008700.1 3662113 3662667 D KEGG: sdn:Sden_0491 OstA-like protein; OstA-like protein 3662113..3662667 Shewanella amazonensis SB2B 4605333 YP_928959.1 CDS Sama_3087 NC_008700.1 3662664 3663395 D KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3662664..3663395 Shewanella amazonensis SB2B 4605334 YP_928960.1 CDS Sama_3088 NC_008700.1 3663507 3664988 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3663507..3664988 Shewanella amazonensis SB2B 4605335 YP_928961.1 CDS Sama_3089 NC_008700.1 3665019 3665306 D KEGG: son:SO3962 ribosomal subunit interface protein; ribosomal subunit interface protein 3665019..3665306 Shewanella amazonensis SB2B 4605336 YP_928962.1 CDS Sama_3090 NC_008700.1 3665309 3665752 D KEGG: son:SO3963 nitrogen regulatory IIA protein; nitrogen regulatory IIA protein 3665309..3665752 Shewanella amazonensis SB2B 4605337 YP_928963.1 CDS Sama_3091 NC_008700.1 3665749 3666600 D KEGG: son:SO3964 hypothetical protein; hypothetical protein 3665749..3666600 Shewanella amazonensis SB2B 4605338 YP_928964.1 CDS Sama_3092 NC_008700.1 3666587 3666862 D KEGG: son:SO3965 phosphocarrier protein NPR; phosphocarrier protein NPR 3666587..3666862 Shewanella amazonensis SB2B 4605339 YP_928965.1 CDS Sama_3093 NC_008700.1 3666933 3668297 D KEGG: son:SO3966 magnesium transporter; magnesium transporter 3666933..3668297 Shewanella amazonensis SB2B 4605340 YP_928966.1 CDS Sama_3094 NC_008700.1 3668286 3668693 R KEGG: pae:PA0914 hypothetical protein; hypothetical protein complement(3668286..3668693) Shewanella amazonensis SB2B 4605341 YP_928967.1 CDS Sama_3095 NC_008700.1 3668794 3669666 R KEGG: son:SO3967 hypothetical protein; molybdate ABC transporter substrate-binding protein complement(3668794..3669666) Shewanella amazonensis SB2B 4605342 YP_928968.1 CDS Sama_3096 NC_008700.1 3669787 3670455 R KEGG: son:SO3969 OmpA family protein; OmpA family protein complement(3669787..3670455) Shewanella amazonensis SB2B 4605343 YP_928969.1 CDS Sama_3097 NC_008700.1 3670826 3671077 D KEGG: son:SO3972 hypothetical transposase; putative transposase 3670826..3671077 Shewanella amazonensis SB2B 4605344 YP_928970.1 CDS Sama_3098 NC_008700.1 3671396 3673312 D KEGG: vvy:VVA0651 GGDEF family protein; diguanylate cyclase 3671396..3673312 Shewanella amazonensis SB2B 4605345 YP_928971.1 CDS Sama_3099 NC_008700.1 3673331 3674023 R KEGG: bfs:BF0093 hypothetical protein; hypothetical protein complement(3673331..3674023) Shewanella amazonensis SB2B 4605346 YP_928972.1 CDS Sama_3100 NC_008700.1 3674109 3674648 R KEGG: dar:Daro_3644 hypothetical protein; hypothetical protein complement(3674109..3674648) Shewanella amazonensis SB2B 4605347 YP_928973.1 CDS Sama_3101 NC_008700.1 3674804 3675988 R KEGG: son:SO4332 hypothetical protein; hypothetical protein complement(3674804..3675988) Shewanella amazonensis SB2B 4605348 YP_928974.1 CDS Sama_3102 NC_008700.1 3676130 3676897 R KEGG: ppr:PBPRB1425 hypothetical protein; hypothetical protein complement(3676130..3676897) Shewanella amazonensis SB2B 4605349 YP_928975.1 CDS Sama_3103 NC_008700.1 3677222 3677782 D KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 3677222..3677782 Shewanella amazonensis SB2B 4605350 YP_928976.1 CDS Sama_3104 NC_008700.1 3677776 3678066 R KEGG: son:SO1746 hypothetical protein; hypothetical protein complement(3677776..3678066) Shewanella amazonensis SB2B 4605351 YP_928977.1 CDS Sama_3105 NC_008700.1 3678128 3678778 D KEGG: ppr:PBPRB1270 hypothetical protein; hypothetical protein 3678128..3678778 Shewanella amazonensis SB2B 4605352 YP_928978.1 CDS Sama_3106 NC_008700.1 3678869 3679156 D hypothetical protein 3678869..3679156 Shewanella amazonensis SB2B 4605353 YP_928979.1 CDS Sama_3107 NC_008700.1 3679164 3679691 R KEGG: pha:PSHAa0866 hypothetical protein; putative phosphohistidine phosphatase, SixA complement(3679164..3679691) Shewanella amazonensis SB2B 4605354 YP_928980.1 CDS Sama_3108 NC_008700.1 3679771 3681912 R KEGG: vvu:VV20803 uncharacterized protein containing a von Willebrand factor type A (vWA) domain; von Willebrand factor type A (vWA) domain-containing protein complement(3679771..3681912) Shewanella amazonensis SB2B 4605355 YP_928981.1 CDS Sama_3109 NC_008700.1 3682095 3682835 R KEGG: vvy:VVA1266 predicted transcriptional regulator; transcriptional regulator complement(3682095..3682835) Shewanella amazonensis SB2B 4605356 YP_928982.1 CDS Sama_3110 NC_008700.1 3683153 3686578 D KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase; putative integral membrane sensor protein 3683153..3686578 Shewanella amazonensis SB2B 4605357 YP_928983.1 CDS Sama_3111 NC_008700.1 3686578 3687564 D KEGG: pat:Patl_2248 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver protein 3686578..3687564 Shewanella amazonensis SB2B 4605358 YP_928984.1 CDS Sama_3112 NC_008700.1 3687752 3689314 D KEGG: son:SO3933 hypothetical protein; hypothetical protein 3687752..3689314 Shewanella amazonensis SB2B 4605359 YP_928985.1 CDS Sama_3113 NC_008700.1 3689385 3691658 R KEGG: sdn:Sden_0686 hypothetical protein; hypothetical protein complement(3689385..3691658) Shewanella amazonensis SB2B 4605360 YP_928986.1 CDS Sama_3114 NC_008700.1 3692333 3692989 D KEGG: sdn:Sden_0376 hypothetical protein; hypothetical protein 3692333..3692989 Shewanella amazonensis SB2B 4605361 YP_928987.1 CDS Sama_3115 NC_008700.1 3692979 3695285 D KEGG: sdn:Sden_0375 GGDEF domain protein; putative diguanylate phosphodiesterase 3692979..3695285 Shewanella amazonensis SB2B 4605362 YP_928988.1 CDS Sama_3116 NC_008700.1 3695362 3696240 D KEGG: sdn:Sden_0374 hypothetical protein; hypothetical protein 3695362..3696240 Shewanella amazonensis SB2B 4605363 YP_928989.1 CDS Sama_3117 NC_008700.1 3696237 3696713 D KEGG: sdn:Sden_0373 globin; globin 3696237..3696713 Shewanella amazonensis SB2B 4605364 YP_928990.1 CDS Sama_3118 NC_008700.1 3696803 3697276 R KEGG: son:SO3490 hypothetical protein; hypothetical protein complement(3696803..3697276) Shewanella amazonensis SB2B 4605365 YP_928991.1 CDS Sama_3119 NC_008700.1 3698165 3699052 D KEGG: son:SO4340 hypothetical protein; hypothetical protein 3698165..3699052 Shewanella amazonensis SB2B 4605366 YP_928992.1 CDS Sama_3120 NC_008700.1 3700055 3700594 D KEGG: noc:Noc_0407 hypothetical protein; hypothetical protein 3700055..3700594 Shewanella amazonensis SB2B 4605367 YP_928993.1 CDS Sama_3121 NC_008700.1 3700897 3702207 D KEGG: bcn:Bcen_1761 hypothetical protein; hypothetical protein 3700897..3702207 Shewanella amazonensis SB2B 4605368 YP_928994.1 CDS Sama_3122 NC_008700.1 3702267 3702962 R KEGG: hch:HCH_01378 transposase and inactivated derivatives; transposase complement(3702267..3702962) Shewanella amazonensis SB2B 4605369 YP_928995.1 CDS Sama_3123 NC_008700.1 3703217 3703966 D hypothetical protein 3703217..3703966 Shewanella amazonensis SB2B 4605370 YP_928996.1 CDS groEL NC_008700.1 3704504 3706141 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(3704504..3706141) Shewanella amazonensis SB2B 4605371 YP_928997.1 CDS groES NC_008700.1 3706197 3706487 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3706197..3706487) Shewanella amazonensis SB2B 4605372 YP_928998.1 CDS Sama_3126 NC_008700.1 3706716 3708083 D KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 3706716..3708083 Shewanella amazonensis SB2B 4605373 YP_928999.1 CDS Sama_3127 NC_008700.1 3708198 3708737 R hypothetical protein complement(3708198..3708737) Shewanella amazonensis SB2B 4605374 YP_929000.1 CDS Sama_3128 NC_008700.1 3708934 3711318 R KEGG: son:SO0578 hypothetical protein; hypothetical protein complement(3708934..3711318) Shewanella amazonensis SB2B 4605375 YP_929001.1 CDS Sama_3129 NC_008700.1 3711339 3715049 R KEGG: son:SO0577 sensory box histidine kinase/response regulator; sensory box histidine kinase/response regulator complement(3711339..3715049) Shewanella amazonensis SB2B 4605376 YP_929002.1 CDS Sama_3130 NC_008700.1 3715245 3716636 R KEGG: son:SO0576 PhoH family protein; PhoH family protein complement(3715245..3716636) Shewanella amazonensis SB2B 4605377 YP_929003.1 CDS Sama_3131 NC_008700.1 3716955 3719858 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 3716955..3719858 Shewanella amazonensis SB2B 4605378 YP_929004.1 CDS Sama_3132 NC_008700.1 3720007 3721704 D KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold; metal-dependent amidohydrolase with the TIM-barrel fold 3720007..3721704 Shewanella amazonensis SB2B 4605379 YP_929005.1 CDS Sama_3133 NC_008700.1 3721789 3722700 D KEGG: son:SO0573 hypothetical protein; hypothetical protein 3721789..3722700 Shewanella amazonensis SB2B 4605380 YP_929006.1 CDS Sama_3134 NC_008700.1 3722702 3723202 R KEGG: cps:CPS_1797 hypothetical protein; hypothetical protein complement(3722702..3723202) Shewanella amazonensis SB2B 4605381 YP_929007.1 CDS Sama_3135 NC_008700.1 3723299 3724105 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3723299..3724105) Shewanella amazonensis SB2B 4605382 YP_929008.1 CDS Sama_3136 NC_008700.1 3724392 3725399 D KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 3724392..3725399 Shewanella amazonensis SB2B 4605383 YP_929009.1 CDS Sama_3137 NC_008700.1 3725413 3726372 D KEGG: son:SO0569 sensory box/GGDEF family protein; response regulator receiver protein 3725413..3726372 Shewanella amazonensis SB2B 4605384 YP_929010.1 CDS Sama_3138 NC_008700.1 3726423 3726848 R KEGG: son:SO0568 hypothetical protein; hypothetical protein complement(3726423..3726848) Shewanella amazonensis SB2B 4605385 YP_929011.1 CDS Sama_3139 NC_008700.1 3726934 3727671 R KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acylglycerol-3-phosphate O-acyltransferase complement(3726934..3727671) Shewanella amazonensis SB2B 4605386 YP_929012.1 CDS Sama_3140 NC_008700.1 3727816 3728571 R KEGG: son:SO0566 ABC 3 transport family protein; ABC 3 transport family protein complement(3727816..3728571) Shewanella amazonensis SB2B 4605387 YP_929013.1 CDS Sama_3141 NC_008700.1 3728575 3729483 R KEGG: son:SO0565 adhesion protein, putative; adhesion protein complement(3728575..3729483) Shewanella amazonensis SB2B 4605388 YP_929014.1 CDS Sama_3142 NC_008700.1 3729464 3730657 R KEGG: sdn:Sden_0527 hypothetical protein; hypothetical protein complement(3729464..3730657) Shewanella amazonensis SB2B 4605389 YP_929015.1 CDS Sama_3143 NC_008700.1 3730736 3731029 R KEGG: sdn:Sden_0526 hypothetical protein; hypothetical protein complement(3730736..3731029) Shewanella amazonensis SB2B 4605390 YP_929016.1 CDS Sama_3144 NC_008700.1 3731354 3731683 R KEGG: son:SO0562 hypothetical protein; hypothetical protein complement(3731354..3731683) Shewanella amazonensis SB2B 4605391 YP_929017.1 CDS Sama_3145 NC_008700.1 3731796 3733430 D KEGG: vfi:VFA1107 mechanosensitive ion channel; mechanosensitive ion channel 3731796..3733430 Shewanella amazonensis SB2B 4605392 YP_929018.1 CDS Sama_3146 NC_008700.1 3733497 3735179 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(3733497..3735179) Shewanella amazonensis SB2B 4605393 YP_929019.1 CDS Sama_3147 NC_008700.1 3735350 3736240 D KEGG: vch:VCA0859 oxidoreductase, aldo/keto reductase 2 family; aldo/keto reductase family oxidoreductase 3735350..3736240 Shewanella amazonensis SB2B 4605394 YP_929020.1 CDS Sama_3148 NC_008700.1 3736366 3737229 R KEGG: son:SO0559 MaoC domain protein; MaoC domain-containing protein complement(3736366..3737229) Shewanella amazonensis SB2B 4605395 YP_929021.1 CDS Sama_3149 NC_008700.1 3737446 3738216 D KEGG: son:SO0558 smtA protein; smtA protein 3737446..3738216 Shewanella amazonensis SB2B 4605396 YP_929022.1 CDS Sama_3150 NC_008700.1 3738233 3738865 R KEGG: sde:Sde_3103 CheD, stimulates methylation of MCP proteins; hypothetical protein complement(3738233..3738865) Shewanella amazonensis SB2B 4605397 YP_929023.1 CDS Sama_3151 NC_008700.1 3738985 3739896 R KEGG: son:SO0557 hypothetical protein; hypothetical protein complement(3738985..3739896) Shewanella amazonensis SB2B 4605398 YP_929024.1 CDS Sama_3152 NC_008700.1 3739939 3740247 D KEGG: sdn:Sden_0671 hypothetical protein; hypothetical protein 3739939..3740247 Shewanella amazonensis SB2B 4605399 YP_929025.1 CDS Sama_3153 NC_008700.1 3740309 3742063 D KEGG: son:SO0555 hypothetical protein; putative diguanylate phosphodiesterase 3740309..3742063 Shewanella amazonensis SB2B 4605400 YP_929026.1 CDS Sama_3154 NC_008700.1 3742073 3742597 R KEGG: son:SO0554 hypothetical protein; hypothetical protein complement(3742073..3742597) Shewanella amazonensis SB2B 4605401 YP_929027.1 CDS Sama_3155 NC_008700.1 3742843 3743352 R KEGG: son:SO0551 hypothetical protein; hypothetical protein complement(3742843..3743352) Shewanella amazonensis SB2B 4605402 YP_929028.1 CDS Sama_3156 NC_008700.1 3743449 3743859 D KEGG: son:SO0550 hypothetical protein; hypothetical protein 3743449..3743859 Shewanella amazonensis SB2B 4605403 YP_929029.1 CDS Sama_3157 NC_008700.1 3743971 3744771 D KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 3743971..3744771 Shewanella amazonensis SB2B 4605404 YP_929030.1 CDS Sama_3158 NC_008700.1 3744903 3745175 D KEGG: sdn:Sden_0658 histone-like DNA-binding protein; histone-like DNA-binding protein 3744903..3745175 Shewanella amazonensis SB2B 4605405 YP_929031.1 CDS Sama_3159 NC_008700.1 3745396 3746085 D KEGG: son:SO0547 hypothetical protein; hypothetical protein 3745396..3746085 Shewanella amazonensis SB2B 4605406 YP_929032.1 CDS Sama_3160 NC_008700.1 3746106 3747011 R KEGG: son:SO0546 ribosomal protein S6 modification protein; ribosomal protein S6 modification protein complement(3746106..3747011) Shewanella amazonensis SB2B 4605407 YP_929033.1 CDS Sama_3161 NC_008700.1 3747090 3748820 R KEGG: son:SO0545 response regulator; response regulator complement(3747090..3748820) Shewanella amazonensis SB2B 4605408 YP_929034.1 CDS Sama_3162 NC_008700.1 3748831 3749259 R KEGG: shm:Shewmr7_3486 response regulator receiver protein; response regulator receiver protein complement(3748831..3749259) Shewanella amazonensis SB2B 4605409 YP_929035.1 CDS Sama_3163 NC_008700.1 3749256 3751307 R KEGG: son:SO0544 sensory box histidine kinase; sensory box histidine kinase complement(3749256..3751307) Shewanella amazonensis SB2B 4605410 YP_929036.1 CDS Sama_3164 NC_008700.1 3751647 3751829 D KEGG: son:SO0543 hypothetical protein; hypothetical protein 3751647..3751829 Shewanella amazonensis SB2B 4605411 YP_929037.1 CDS Sama_3165 NC_008700.1 3751952 3753307 D KEGG: son:SO0542 hypothetical protein; hypothetical protein 3751952..3753307 Shewanella amazonensis SB2B 4605412 YP_929038.1 CDS Sama_3166 NC_008700.1 3753582 3754961 R KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein complement(3753582..3754961) Shewanella amazonensis SB2B 4605413 YP_929039.1 CDS Sama_3167 NC_008700.1 3755074 3755628 R KEGG: sdn:Sden_0648 hypothetical protein; hypothetical protein complement(3755074..3755628) Shewanella amazonensis SB2B 4605414 YP_929040.1 CDS Sama_3168 NC_008700.1 3755670 3755870 R hypothetical protein complement(3755670..3755870) Shewanella amazonensis SB2B 4605415 YP_929041.1 CDS metF NC_008700.1 3756219 3757109 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(3756219..3757109) Shewanella amazonensis SB2B 4605416 YP_929042.1 CDS metL NC_008700.1 3757284 3759677 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(3757284..3759677) Shewanella amazonensis SB2B 4605417 YP_929043.1 CDS Sama_3171 NC_008700.1 3759691 3760851 R KEGG: son:SO4056 cystathionine gamma-synthase; cystathionine gamma-synthase complement(3759691..3760851) Shewanella amazonensis SB2B 4605418 YP_929044.1 CDS Sama_3172 NC_008700.1 3761066 3761380 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 3761066..3761380 Shewanella amazonensis SB2B 4605419 YP_929045.1 CDS Sama_3173 NC_008700.1 3761445 3762182 D KEGG: sdn:Sden_0613 protein of unknown function DUF81; hypothetical protein 3761445..3762182 Shewanella amazonensis SB2B 4605420 YP_929046.1 CDS Sama_3174 NC_008700.1 3762204 3763397 R KEGG: sec:SC4121 putative outer membrane or exported; putative outer membrane or exported complement(3762204..3763397) Shewanella amazonensis SB2B 4605421 YP_929047.1 CDS Sama_3175 NC_008700.1 3763536 3764522 R KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase subunit C complement(3763536..3764522) Shewanella amazonensis SB2B 4605422 YP_929048.1 CDS Sama_3176 NC_008700.1 3764525 3765091 R KEGG: son:SO4061 polysulfide reductase, subunit B; polysulfide reductase subunit B complement(3764525..3765091) Shewanella amazonensis SB2B 4605423 YP_929049.1 CDS Sama_3177 NC_008700.1 3765105 3767387 R KEGG: son:SO4062 polysulfide reductase, subunit A; polysulfide reductase subunit A complement(3765105..3767387) Shewanella amazonensis SB2B 4605424 YP_929050.1 CDS Sama_3178 NC_008700.1 3768010 3768339 D KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 3768010..3768339 Shewanella amazonensis SB2B 4605425 YP_929051.1 CDS Sama_3179 NC_008700.1 3768411 3770216 D KEGG: son:SO4143 hypothetical protein; hypothetical protein 3768411..3770216 Shewanella amazonensis SB2B 4605426 YP_929052.1 CDS Sama_3180 NC_008700.1 3770257 3771672 D KEGG: son:SO4144 cytochrome c, putative; cytochrome c 3770257..3771672 Shewanella amazonensis SB2B 4605427 YP_929053.1 CDS Sama_3181 NC_008700.1 3772018 3773139 D KEGG: son:SO4150 transporter, putative; transporter 3772018..3773139 Shewanella amazonensis SB2B 4605428 YP_929054.1 CDS Sama_3182 NC_008700.1 3773155 3774984 R KEGG: son:SO4155 sensor histidine kinase; sensor histidine kinase complement(3773155..3774984) Shewanella amazonensis SB2B 4605429 YP_929055.1 CDS Sama_3183 NC_008700.1 3775147 3775722 D KEGG: son:SO4157 DNA-binding response regulator; response regulator receiver protein 3775147..3775722 Shewanella amazonensis SB2B 4605430 YP_929056.1 CDS Sama_3184 NC_008700.1 3776141 3776629 D KEGG: pfo:Pfl_3712 cupin region; cupin region 3776141..3776629 Shewanella amazonensis SB2B 4605431 YP_929057.1 CDS Sama_3185 NC_008700.1 3776833 3777915 R KEGG: son:SO1144 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(3776833..3777915) Shewanella amazonensis SB2B 4605432 YP_929058.1 CDS Sama_3186 NC_008700.1 3778333 3778869 R KEGG: sdn:Sden_0602 response regulator receiver; response regulator receiver protein complement(3778333..3778869) Shewanella amazonensis SB2B 4605433 YP_929059.1 CDS Sama_3187 NC_008700.1 3778866 3780137 R KEGG: son:SO4173 sensor histidine kinase; sensor histidine kinase complement(3778866..3780137) Shewanella amazonensis SB2B 4605434 YP_929060.1 CDS Sama_3188 NC_008700.1 3780262 3783462 R KEGG: son:SO0520 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(3780262..3783462) Shewanella amazonensis SB2B 4605435 YP_929061.1 CDS Sama_3189 NC_008700.1 3783477 3784682 R KEGG: sdn:Sden_0575 secretion protein HlyD; secretion protein HlyD complement(3783477..3784682) Shewanella amazonensis SB2B 4605436 YP_929062.1 CDS Sama_3190 NC_008700.1 3785094 3785519 R KEGG: son:SO0516 hypothetical protein; hypothetical protein complement(3785094..3785519) Shewanella amazonensis SB2B 4605437 YP_929063.1 CDS Sama_3191 NC_008700.1 3785611 3785787 R KEGG: son:SO0515 hypothetical protein; hypothetical protein complement(3785611..3785787) Shewanella amazonensis SB2B 4605438 YP_929064.1 CDS Sama_3192 NC_008700.1 3785818 3786189 R KEGG: son:SO0514 hypothetical protein; hypothetical protein complement(3785818..3786189) Shewanella amazonensis SB2B 4605439 YP_929065.1 CDS Sama_3193 NC_008700.1 3786280 3786693 D KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 3786280..3786693 Shewanella amazonensis SB2B 4605440 YP_929066.1 CDS Sama_3194 NC_008700.1 3786804 3787259 D KEGG: sdn:Sden_3285 3-dehydroquinate dehydratase, type II; 3-dehydroquinate dehydratase 3786804..3787259 Shewanella amazonensis SB2B 4605441 YP_929067.1 CDS Sama_3195 NC_008700.1 3787259 3787687 D KEGG: vpa:VP2880 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3787259..3787687 Shewanella amazonensis SB2B 4605442 YP_929068.1 CDS Sama_3196 NC_008700.1 3787677 3789041 D KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3787677..3789041 Shewanella amazonensis SB2B 4605443 YP_929069.1 CDS Sama_3197 NC_008700.1 3789009 3790049 R KEGG: shm:Shewmr7_0410 hypothetical protein; hypothetical protein complement(3789009..3790049) Shewanella amazonensis SB2B 4605444 YP_929070.1 CDS Sama_3198 NC_008700.1 3790069 3790581 R KEGG: son:SO4195 PAP2 family protein; PAP2 family protein complement(3790069..3790581) Shewanella amazonensis SB2B 4605445 YP_929071.1 CDS Sama_3199 NC_008700.1 3790687 3790935 R KEGG: son:SO4196 hypothetical protein; hypothetical protein complement(3790687..3790935) Shewanella amazonensis SB2B 4605446 YP_929072.1 CDS Sama_3200 NC_008700.1 3791276 3791761 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 3791276..3791761 Shewanella amazonensis SB2B 4605447 YP_929073.1 CDS Sama_3201 NC_008700.1 3791925 3792962 D KEGG: sdn:Sden_0462 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 3791925..3792962 Shewanella amazonensis SB2B 4605448 YP_929074.1 CDS Sama_3202 NC_008700.1 3793193 3793948 D KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 3793193..3793948 Shewanella amazonensis SB2B 4605449 YP_929075.1 CDS Sama_3203 NC_008700.1 3793948 3794565 D KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 3793948..3794565 Shewanella amazonensis SB2B 4605450 YP_929076.1 CDS Sama_3204 NC_008700.1 3794562 3796211 D KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; ubiquinone biosynthesis protein AarF 3794562..3796211 Shewanella amazonensis SB2B 4605451 YP_929077.1 CDS Sama_3205 NC_008700.1 3796274 3796507 D KEGG: son:SO4202 Sec-independent protein translocase protein TatA; Sec-independent protein translocase protein TatA 3796274..3796507 Shewanella amazonensis SB2B 4605452 YP_929078.1 CDS Sama_3206 NC_008700.1 3796514 3796891 D KEGG: sdn:Sden_0457 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB 3796514..3796891 Shewanella amazonensis SB2B 4605453 YP_929079.1 CDS Sama_3207 NC_008700.1 3796895 3797647 D KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent periplasmic protein translocation protein TatC 3796895..3797647 Shewanella amazonensis SB2B 4605454 YP_929080.1 CDS Sama_3208 NC_008700.1 3797742 3798278 D KEGG: son:SO4205 hypothetical protein; hypothetical protein 3797742..3798278 Shewanella amazonensis SB2B 4605455 YP_929081.1 CDS Sama_3209 NC_008700.1 3798302 3799105 D KEGG: son:SO4206 hydrolase, TatD family; TatD family hydrolase 3798302..3799105 Shewanella amazonensis SB2B 4605456 YP_929082.1 CDS Sama_3210 NC_008700.1 3799098 3800972 D KEGG: son:SO4207 GGDEF domain protein protein; diguanylate cyclase 3799098..3800972 Shewanella amazonensis SB2B 4605457 YP_929083.1 CDS Sama_3211 NC_008700.1 3800987 3801997 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3800987..3801997 Shewanella amazonensis SB2B 4605458 YP_929084.1 CDS Sama_3212 NC_008700.1 3802168 3802704 D KEGG: son:SO0409 hypothetical protein; hypothetical protein 3802168..3802704 Shewanella amazonensis SB2B 4605459 YP_929085.1 CDS Sama_3213 NC_008700.1 3802776 3805781 R KEGG: cps:CPS_4791 putative oar protein; putative oar protein complement(3802776..3805781) Shewanella amazonensis SB2B 4605460 YP_929086.1 CDS Sama_3214 NC_008700.1 3805997 3806914 R KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase complement(3805997..3806914) Shewanella amazonensis SB2B 4605461 YP_929087.1 CDS Sama_3215 NC_008700.1 3806926 3808245 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(3806926..3808245) Shewanella amazonensis SB2B 4605462 YP_929088.1 CDS Sama_3216 NC_008700.1 3808397 3808723 D KEGG: sdn:Sden_0448 thioredoxin; thioredoxin 3808397..3808723 Shewanella amazonensis SB2B 4605463 YP_929089.1 CDS rho NC_008700.1 3808940 3810202 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3808940..3810202 Shewanella amazonensis SB2B 4605464 YP_929090.1 CDS Sama_3218 NC_008700.1 3810297 3811256 R KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3810297..3811256) Shewanella amazonensis SB2B 4605465 YP_929091.1 CDS frdB NC_008700.1 3811363 3812091 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(3811363..3812091) Shewanella amazonensis SB2B 4605466 YP_929092.1 CDS Sama_3220 NC_008700.1 3812088 3814127 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(3812088..3814127) Shewanella amazonensis SB2B 4605467 YP_929093.1 CDS Sama_3221 NC_008700.1 3814208 3814882 R KEGG: son:SO0397 fumarate reductase cytochrome B subunit; fumarate reductase cytochrome subunit B complement(3814208..3814882) Shewanella amazonensis SB2B 4605468 YP_929094.1 CDS Sama_3222 NC_008700.1 3815047 3815778 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(3815047..3815778) Shewanella amazonensis SB2B 4605469 YP_929095.1 CDS Sama_3223 NC_008700.1 3816118 3817527 D KEGG: ilo:IL0249 hypothetical protein; hypothetical protein 3816118..3817527 Shewanella amazonensis SB2B 4605470 YP_929096.1 CDS prmA NC_008700.1 3817648 3818535 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3817648..3818535 Shewanella amazonensis SB2B 4605471 YP_929097.1 CDS Sama_3225 NC_008700.1 3818683 3819654 D KEGG: son:SO0394 tRNA-dihydrouridine synthase B; tRNA-dihydrouridine synthase B 3818683..3819654 Shewanella amazonensis SB2B 4605472 YP_929098.1 CDS fis NC_008700.1 3819669 3819974 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3819669..3819974 Shewanella amazonensis SB2B 4605473 YP_929099.1 CDS Sama_3227 NC_008700.1 3820161 3820556 R KEGG: rba:RB5426 hypothetical protein; hypothetical protein complement(3820161..3820556) Shewanella amazonensis SB2B 4605474 YP_929100.1 CDS Sama_3228 NC_008700.1 3820817 3821971 R KEGG: vvy:VV2752 glycerate kinase; glycerate kinase complement(3820817..3821971) Shewanella amazonensis SB2B 4605475 YP_929101.1 CDS Sama_3229 NC_008700.1 3822710 3823711 D KEGG: bpa:BPP0826 hypothetical protein; hypothetical protein 3822710..3823711 Shewanella amazonensis SB2B 4605476 YP_929102.1 CDS Sama_3230 NC_008700.1 3823901 3824401 D hypothetical protein 3823901..3824401 Shewanella amazonensis SB2B 4605477 YP_929103.1 CDS Sama_3231 NC_008700.1 3824427 3824708 R KEGG: son:SO0793 hypothetical protein; hypothetical protein complement(3824427..3824708) Shewanella amazonensis SB2B 4605478 YP_929104.1 CDS Sama_3232 NC_008700.1 3824901 3825410 R hypothetical protein complement(3824901..3825410) Shewanella amazonensis SB2B 4605479 YP_929105.1 CDS Sama_3233 NC_008700.1 3825771 3827876 D KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 3825771..3827876 Shewanella amazonensis SB2B 4605480 YP_929106.1 CDS Sama_3234 NC_008700.1 3828019 3828807 D hypothetical protein 3828019..3828807 Shewanella amazonensis SB2B 4605481 YP_929107.1 CDS Sama_3235 NC_008700.1 3829138 3829524 D hypothetical protein 3829138..3829524 Shewanella amazonensis SB2B 4605482 YP_929108.1 CDS Sama_3236 NC_008700.1 3829918 3830622 D KEGG: son:SO4302 hypothetical protein; hypothetical protein 3829918..3830622 Shewanella amazonensis SB2B 4605483 YP_929109.1 CDS Sama_3237 NC_008700.1 3830646 3831110 R KEGG: lipoprotein, putative; putative lipoprotein complement(3830646..3831110) Shewanella amazonensis SB2B 4605484 YP_929110.1 CDS Sama_3238 NC_008700.1 3831225 3832166 R KEGG: vch:VC1165 hypothetical protein; hypothetical protein complement(3831225..3832166) Shewanella amazonensis SB2B 4605485 YP_929111.1 CDS Sama_3239 NC_008700.1 3832379 3833395 R KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin complement(3832379..3833395) Shewanella amazonensis SB2B 4605486 YP_929112.1 CDS Sama_3240 NC_008700.1 3833455 3834792 R KEGG: vpa:VPA0824 putative regulatory protein UhpC; putative regulatory protein UhpC complement(3833455..3834792) Shewanella amazonensis SB2B 4605487 YP_929113.1 CDS Sama_3241 NC_008700.1 3835051 3836310 D KEGG: vch:VCA0706 phosphoglycerate transport regulatory protein PgtC, putative; phosphoglycerate transport regulatory protein PgtC 3835051..3836310 Shewanella amazonensis SB2B 4605488 YP_929114.1 CDS Sama_3242 NC_008700.1 3836310 3838673 D KEGG: ppr:PBPRA2770 hypothetical phosphoglycerate transport regulatory protein PgtB; phosphoglycerate transport regulator 3836310..3838673 Shewanella amazonensis SB2B 4605489 YP_929115.1 CDS Sama_3243 NC_008700.1 3838657 3839946 D KEGG: ppr:PBPRA2771 phosphoglycerate transport system transcription regulator; response regulator receiver protein 3838657..3839946 Shewanella amazonensis SB2B 4605490 YP_929116.1 CDS Sama_3244 NC_008700.1 3840011 3840502 D KEGG: sdn:Sden_0395 divergent AAA region; putative transcriptional regulator 3840011..3840502 Shewanella amazonensis SB2B 4605491 YP_929117.1 CDS Sama_3245 NC_008700.1 3840520 3841107 R KEGG: son:SO4304 urease accessory protein UreJ; urease accessory protein UreJ complement(3840520..3841107) Shewanella amazonensis SB2B 4605492 YP_929118.1 CDS Sama_3246 NC_008700.1 3841216 3841932 R KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD-superfamily hydrolase complement(3841216..3841932) Shewanella amazonensis SB2B 4605493 YP_929119.1 CDS Sama_3247 NC_008700.1 3841932 3842822 R KEGG: son:SO4306 integrase/recombinase XerC; integrase/recombinase XerC complement(3841932..3842822) Shewanella amazonensis SB2B 4605494 YP_929120.1 CDS Sama_3248 NC_008700.1 3842825 3843460 R KEGG: sfr:Sfri_0446 protein of unknown function DUF484; hypothetical protein complement(3842825..3843460) Shewanella amazonensis SB2B 4605495 YP_929121.1 CDS dapF NC_008700.1 3843457 3844284 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3843457..3844284) Shewanella amazonensis SB2B 4605496 YP_929122.1 CDS Sama_3250 NC_008700.1 3844347 3845591 R KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(3844347..3845591) Shewanella amazonensis SB2B 4605497 YP_929123.1 CDS Sama_3251 NC_008700.1 3845603 3845842 R KEGG: son:SO4310 hypothetical protein; hypothetical protein complement(3845603..3845842) Shewanella amazonensis SB2B 4605498 YP_929124.1 CDS Sama_3252 NC_008700.1 3845845 3846177 D KEGG: son:SO4311 CyaY protein; CyaY protein 3845845..3846177 Shewanella amazonensis SB2B 4605499 YP_929125.1 CDS cyaA NC_008700.1 3846202 3848631 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(3846202..3848631) Shewanella amazonensis SB2B 4605500 YP_929126.1 CDS hemC NC_008700.1 3848789 3849769 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3848789..3849769 Shewanella amazonensis SB2B 4605501 YP_929127.1 CDS Sama_3255 NC_008700.1 3849772 3850491 D KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 3849772..3850491 Shewanella amazonensis SB2B 4605502 YP_929128.1 CDS Sama_3256 NC_008700.1 3850549 3851739 D KEGG: son:SO4315 hemX protein; hemX protein 3850549..3851739 Shewanella amazonensis SB2B 4605503 YP_929129.1 CDS Sama_3257 NC_008700.1 3851736 3852902 D KEGG: son:SO4316 HemY protein; HemY protein 3851736..3852902 Shewanella amazonensis SB2B 4605504 YP_929130.1 CDS Sama_3258 NC_008700.1 3853219 3865863 D KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein; putative outer membrane adhesin like protein 3853219..3865863 Shewanella amazonensis SB2B 4605505 YP_929131.1 CDS Sama_3259 NC_008700.1 3865958 3868129 D KEGG: son:SO4318 toxin secretion ATP-binding protein; toxin secretion ATP-binding protein 3865958..3868129 Shewanella amazonensis SB2B 4605506 YP_929132.1 CDS Sama_3260 NC_008700.1 3868126 3869508 D KEGG: son:SO4319 HlyD family secretion protein; HlyD family secretion protein 3868126..3869508 Shewanella amazonensis SB2B 4605507 YP_929133.1 CDS Sama_3261 NC_008700.1 3869538 3870947 D KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC; type I secretion outer membrane protein, TolC 3869538..3870947 Shewanella amazonensis SB2B 4605508 YP_929134.1 CDS Sama_3262 NC_008700.1 3870944 3871549 D KEGG: sdn:Sden_0380 OmpA/MotB; OmpA/MotB protein 3870944..3871549 Shewanella amazonensis SB2B 4605509 YP_929135.1 CDS Sama_3263 NC_008700.1 3871566 3872273 D KEGG: son:SO4322 hypothetical protein; hypothetical protein 3871566..3872273 Shewanella amazonensis SB2B 4605510 YP_929136.1 CDS Sama_3264 NC_008700.1 3872282 3874201 D KEGG: son:SO4323 GGDEF domain protein protein; putative diguanylate phosphodiesterase 3872282..3874201 Shewanella amazonensis SB2B 4605511 YP_929137.1 CDS Sama_3265 NC_008700.1 3875054 3877642 D KEGG: son:SO4324 GGDEF domain protein protein; diguanylate cyclase 3875054..3877642 Shewanella amazonensis SB2B 4606026 YP_929138.1 CDS Sama_3266 NC_008700.1 3877655 3879667 R KEGG: shm:Shewmr7_3650 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(3877655..3879667) Shewanella amazonensis SB2B 4605513 YP_929139.1 CDS Sama_3267 NC_008700.1 3879812 3880378 D KEGG: son:SO4326 transcriptional regulator, TetR family; TetR family transcriptional regulator 3879812..3880378 Shewanella amazonensis SB2B 4605514 YP_929140.1 CDS Sama_3268 NC_008700.1 3880395 3881513 D KEGG: son:SO4327 HlyD family secretion domain protein; HlyD family secretion protein 3880395..3881513 Shewanella amazonensis SB2B 4605515 YP_929141.1 CDS Sama_3269 NC_008700.1 3881526 3884597 D KEGG: vpa:VP0038 putative multidrug resistance protein; putative multidrug resistance protein 3881526..3884597 Shewanella amazonensis SB2B 4605516 YP_929142.1 CDS Sama_3270 NC_008700.1 3884878 3887034 D KEGG: vch:VC1560 catalase/peroxidase; catalase 3884878..3887034 Shewanella amazonensis SB2B 4605517 YP_929143.1 CDS Sama_3271 NC_008700.1 3887161 3887418 D KEGG: sdn:Sden_0405 protein of unknown function DUF526; hypothetical protein 3887161..3887418 Shewanella amazonensis SB2B 4605518 YP_929144.1 CDS Sama_3272 NC_008700.1 3887485 3888069 R KEGG: son:SO4304 urease accessory protein UreJ; urease accessory protein UreJ complement(3887485..3888069) Shewanella amazonensis SB2B 4605519 YP_929145.1 CDS Sama_3273 NC_008700.1 3888098 3888406 R hypothetical protein complement(3888098..3888406) Shewanella amazonensis SB2B 4605520 YP_929146.1 CDS Sama_3274 NC_008700.1 3888687 3890126 D KEGG: son:SO4334 inner membrane protein, putative; hypothetical protein 3888687..3890126 Shewanella amazonensis SB2B 4605521 YP_929147.1 CDS Sama_3275 NC_008700.1 3890275 3891057 D KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative; phosphatidylglycerophosphatase B 3890275..3891057 Shewanella amazonensis SB2B 4605522 YP_929148.1 CDS Sama_3276 NC_008700.1 3891054 3891797 R KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; amino acid ABC transporter substrate-binding protein complement(3891054..3891797) Shewanella amazonensis SB2B 4605523 YP_929149.1 CDS Sama_3277 NC_008700.1 3891856 3892986 R KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase complement(3891856..3892986) Shewanella amazonensis SB2B 4605524 YP_929150.1 CDS Sama_3278 NC_008700.1 3893120 3894715 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(3893120..3894715) Shewanella amazonensis SB2B 4605525 YP_929151.1 CDS Sama_3279 NC_008700.1 3894717 3896573 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(3894717..3896573) Shewanella amazonensis SB2B 4605526 YP_929152.1 CDS ilvM NC_008700.1 3896663 3896914 R KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit complement(3896663..3896914) Shewanella amazonensis SB2B 4605527 YP_929153.1 CDS Sama_3281 NC_008700.1 3896911 3898581 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(3896911..3898581) Shewanella amazonensis SB2B 4605528 YP_929154.1 CDS Sama_3282 NC_008700.1 3899079 3900560 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(3899079..3900560) Shewanella amazonensis SB2B 4605529 YP_929155.1 CDS Sama_3283 NC_008700.1 3900776 3901654 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 3900776..3901654 Shewanella amazonensis SB2B 4605530 YP_929156.1 CDS Sama_3284 NC_008700.1 3901708 3903018 R KEGG: vch:VCA0837 hemolysin, putative; hemolysin complement(3901708..3903018) Shewanella amazonensis SB2B 4605531 YP_929157.1 CDS Sama_3285 NC_008700.1 3903099 3903902 D KEGG: cvi:CV1638 probable amino acid ABC transporter; putative amino acid ABC transporter 3903099..3903902 Shewanella amazonensis SB2B 4605532 YP_929158.1 CDS Sama_3286 NC_008700.1 3903986 3905773 R KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domain proteins); diguanylate cyclase complement(3903986..3905773) Shewanella amazonensis SB2B 4605533 YP_929159.1 CDS Sama_3287 NC_008700.1 3905858 3906871 R KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic sugar-binding protein complement(3905858..3906871) Shewanella amazonensis SB2B 4605534 YP_929160.1 CDS Sama_3288 NC_008700.1 3907091 3908617 D KEGG: son:SO0349 magnesium chelatase family protein; magnesium chelatase family protein 3907091..3908617 Shewanella amazonensis SB2B 4605535 YP_929161.1 CDS Sama_3289 NC_008700.1 3908878 3909738 R KEGG: vvy:VVA0111 hypothetical protein; hypothetical protein complement(3908878..3909738) Shewanella amazonensis SB2B 4605536 YP_929162.1 CDS Sama_3290 NC_008700.1 3909924 3910844 D KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 3909924..3910844 Shewanella amazonensis SB2B 4605537 YP_929163.1 CDS Sama_3291 NC_008700.1 3910837 3911778 D KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase 3910837..3911778 Shewanella amazonensis SB2B 4605538 YP_929164.1 CDS Sama_3292 NC_008700.1 3912502 3912981 R KEGG: ppr:PBPRA3591 hypothetical protein; hypothetical protein complement(3912502..3912981) Shewanella amazonensis SB2B 4605539 YP_929165.1 CDS Sama_3293 NC_008700.1 3913328 3914098 D KEGG: son:SO0346 transcriptional regulator GntR family; GntR family transcriptional regulator 3913328..3914098 Shewanella amazonensis SB2B 4605540 YP_929166.1 CDS prpB NC_008700.1 3914095 3914979 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3914095..3914979 Shewanella amazonensis SB2B 4605541 YP_929167.1 CDS Sama_3295 NC_008700.1 3915169 3916305 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3915169..3916305 Shewanella amazonensis SB2B 4605542 YP_929168.1 CDS Sama_3296 NC_008700.1 3916406 3918991 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3916406..3918991 Shewanella amazonensis SB2B 4605543 YP_929169.1 CDS Sama_3297 NC_008700.1 3919355 3920545 D KEGG: pae:PA0793 hypothetical protein; hypothetical protein 3919355..3920545 Shewanella amazonensis SB2B 4605544 YP_929170.1 CDS Sama_3298 NC_008700.1 3920808 3925292 D KEGG: son:SO0341 sensory box protein; sensory box protein 3920808..3925292 Shewanella amazonensis SB2B 4605545 YP_929171.1 CDS Sama_3299 NC_008700.1 3925499 3926584 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(3925499..3926584) Shewanella amazonensis SB2B 4605546 YP_929172.1 CDS Sama_3300 NC_008700.1 3926693 3927862 D KEGG: mag:amb1653 predicted acyl-CoA transferase/carnitine dehydratase; acyl-CoA transferase/carnitine dehydratase 3926693..3927862 Shewanella amazonensis SB2B 4605547 YP_929173.1 CDS Sama_3301 NC_008700.1 3927896 3928753 R KEGG: son:SO4645 hypothetical protein; hypothetical protein complement(3927896..3928753) Shewanella amazonensis SB2B 4605548 YP_929174.1 CDS Sama_3302 NC_008700.1 3928981 3929283 D KEGG: sdn:Sden_1265 propeptide, PepSY amd peptidase M4; hypothetical protein 3928981..3929283 Shewanella amazonensis SB2B 4605549 YP_929175.1 CDS Sama_3303 NC_008700.1 3929286 3929960 D KEGG: son:SO4647 DNA-binding response regulator; response regulator receiver protein 3929286..3929960 Shewanella amazonensis SB2B 4605550 YP_929176.1 CDS Sama_3304 NC_008700.1 3929960 3931360 D KEGG: son:SO4648 sensor histidine kinase; sensor histidine kinase 3929960..3931360 Shewanella amazonensis SB2B 4605551 YP_929177.1 CDS Sama_3305 NC_008700.1 3931898 3932545 R KEGG: son:SO0782 hypothetical protein; hypothetical protein complement(3931898..3932545) Shewanella amazonensis SB2B 4605552 YP_929178.1 CDS Sama_3306 NC_008700.1 3932542 3934530 R KEGG: son:SO0783 hypothetical protein; hypothetical protein complement(3932542..3934530) Shewanella amazonensis SB2B 4605553 YP_929179.1 CDS Sama_3307 NC_008700.1 3935845 3936990 R KEGG: vch:VCA0267 multidrug resistance protein D; multidrug resistance protein D complement(3935845..3936990) Shewanella amazonensis SB2B 4605554 YP_929180.1 CDS Sama_3308 NC_008700.1 3937090 3937857 D KEGG: vvy:VVA1441 AraC-type DNA-binding domain-containing protein; AraC-type DNA-binding domain-containing protein 3937090..3937857 Shewanella amazonensis SB2B 4605555 YP_929181.1 CDS Sama_3309 NC_008700.1 3938306 3939292 D KEGG: sfr:Sfri_0767 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3938306..3939292 Shewanella amazonensis SB2B 4605556 YP_929182.1 CDS Sama_3310 NC_008700.1 3939305 3940057 R KEGG: stm:STM3065 hypothetical protein; hypothetical protein complement(3939305..3940057) Shewanella amazonensis SB2B 4605557 YP_929183.1 CDS Sama_3311 NC_008700.1 3940525 3941976 D KEGG: son:SO4649 hypothetical protein; hypothetical protein 3940525..3941976 Shewanella amazonensis SB2B 4605558 YP_929184.1 CDS Sama_3312 NC_008700.1 3942137 3942772 D KEGG: dsy:DSY4339 hypothetical protein; hypothetical protein 3942137..3942772 Shewanella amazonensis SB2B 4605559 YP_929185.1 CDS Sama_3313 NC_008700.1 3942818 3944362 R KEGG: cps:CPS_2871 cold-active alkaline serine protease; cold-active alkaline serine protease complement(3942818..3944362) Shewanella amazonensis SB2B 4605560 YP_929186.1 CDS Sama_3314 NC_008700.1 3944545 3945894 R KEGG: lpp:lpp1568 phospholipase; phospholipase complement(3944545..3945894) Shewanella amazonensis SB2B 4605561 YP_929187.1 CDS Sama_3315 NC_008700.1 3945967 3946683 R KEGG: hch:HCH_00871 uncharacterized secreted protein; hypothetical protein complement(3945967..3946683) Shewanella amazonensis SB2B 4605562 YP_929188.1 CDS Sama_3316 NC_008700.1 3946825 3947085 D KEGG: pfo:Pfl_3287 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 3946825..3947085 Shewanella amazonensis SB2B 4605563 YP_929189.1 CDS Sama_3317 NC_008700.1 3947088 3947441 R KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; hypothetical protein complement(3947088..3947441) Shewanella amazonensis SB2B 4605564 YP_929190.1 CDS Sama_3318 NC_008700.1 3947493 3949019 R KEGG: son:SO0336 hypothetical Na+/H+ antiporter; Na+/H+ antiporter complement(3947493..3949019) Shewanella amazonensis SB2B 4605565 YP_929191.1 CDS Sama_3319 NC_008700.1 3949192 3949395 D KEGG: sdn:Sden_0287 protein of unknown function DUF904; hypothetical protein 3949192..3949395 Shewanella amazonensis SB2B 4605566 YP_929192.1 CDS Sama_3320 NC_008700.1 3949400 3949648 R KEGG: son:SO0334 hypothetical protein; hypothetical protein complement(3949400..3949648) Shewanella amazonensis SB2B 4605567 YP_929193.1 CDS Sama_3321 NC_008700.1 3949999 3950613 R KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; thiol:disulfide interchange protein DsbA complement(3949999..3950613) Shewanella amazonensis SB2B 4605568 YP_929194.1 CDS Sama_3322 NC_008700.1 3950729 3951706 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(3950729..3951706) Shewanella amazonensis SB2B 4605569 YP_929195.1 CDS Sama_3323 NC_008700.1 3951703 3952011 R KEGG: son:SO0331 hypothetical protein; hypothetical protein complement(3951703..3952011) Shewanella amazonensis SB2B 4605570 YP_929196.1 CDS Sama_3324 NC_008700.1 3952020 3952304 D hypothetical protein 3952020..3952304 Shewanella amazonensis SB2B 4605571 YP_929197.1 CDS Sama_3325 NC_008700.1 3952380 3953180 R KEGG: sdn:Sden_0281 hypothetical protein; hypothetical protein complement(3952380..3953180) Shewanella amazonensis SB2B 4605572 YP_929198.1 CDS Sama_3326 NC_008700.1 3953446 3953835 D KEGG: vpa:VPA0976 hypothetical protein; hypothetical protein 3953446..3953835 Shewanella amazonensis SB2B 4605573 YP_929199.1 CDS Sama_3327 NC_008700.1 3953916 3954767 D KEGG: son:SO0323 hypothetical protein; hypothetical protein 3953916..3954767 Shewanella amazonensis SB2B 4605574 YP_929200.1 CDS Sama_3328 NC_008700.1 3954836 3956878 D KEGG: sdn:Sden_0280 peptidase S9, prolyl oligopeptidase active site region; peptidase S9, prolyl oligopeptidase active site region 3954836..3956878 Shewanella amazonensis SB2B 4605575 YP_929201.1 CDS Sama_3329 NC_008700.1 3957046 3957621 D KEGG: son:SO0322 hypothetical protein; hypothetical protein 3957046..3957621 Shewanella amazonensis SB2B 4605576 YP_929202.1 CDS Sama_3330 NC_008700.1 3957712 3958287 R KEGG: son:SO0321 hypothetical protein; hypothetical protein complement(3957712..3958287) Shewanella amazonensis SB2B 4605577 YP_929203.1 CDS Sama_3331 NC_008700.1 3958349 3959398 R KEGG: son:SO0320 hypothetical protein; hypothetical protein complement(3958349..3959398) Shewanella amazonensis SB2B 4605578 YP_929204.1 CDS Sama_3332 NC_008700.1 3959580 3959927 R KEGG: son:SO0318 hypothetical protein; hypothetical protein complement(3959580..3959927) Shewanella amazonensis SB2B 4605579 YP_929205.1 CDS Sama_3333 NC_008700.1 3960295 3960399 D KEGG: vch:VCA1065 hypothetical protein; hypothetical protein 3960295..3960399 Shewanella amazonensis SB2B 4605580 YP_929206.1 CDS Sama_3334 NC_008700.1 3960625 3962787 D KEGG: vch:VCA1063 ornithine decarboxylase, inducible; ornithine decarboxylase 3960625..3962787 Shewanella amazonensis SB2B 4605581 YP_929207.1 CDS potE NC_008700.1 3962848 3964164 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 3962848..3964164 Shewanella amazonensis SB2B 4605582 YP_929208.1 CDS Sama_3336 NC_008700.1 3964229 3965383 D KEGG: son:SO0312 outer membrane porin, putative; outer membrane porin 3964229..3965383 Shewanella amazonensis SB2B 4605583 YP_929209.1 CDS Sama_3337 NC_008700.1 3965553 3966968 R KEGG: mag:amb2266 homospermidine synthase; homospermidine synthase complement(3965553..3966968) Shewanella amazonensis SB2B 4605584 YP_929210.1 CDS Sama_3338 NC_008700.1 3967080 3967544 R KEGG: pfl:PFL_2399 hypothetical protein; hypothetical protein complement(3967080..3967544) Shewanella amazonensis SB2B 4605585 YP_929211.1 CDS Sama_3339 NC_008700.1 3967640 3968233 D KEGG: pfo:Pfl_0732 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3967640..3968233 Shewanella amazonensis SB2B 4605586 YP_929212.1 CDS Sama_3340 NC_008700.1 3968222 3969190 R hypothetical protein complement(3968222..3969190) Shewanella amazonensis SB2B 4605587 YP_929213.1 CDS Sama_3341 NC_008700.1 3969397 3969792 D KEGG: xcb:XC_0916 transcriptional regulator BlaI family; CopY family transcriptional regulator 3969397..3969792 Shewanella amazonensis SB2B 4605588 YP_929214.1 CDS Sama_3342 NC_008700.1 3969785 3970996 D KEGG: xom:XOO_1086 TonB-like protein; predicted signal transduction N-terminal membrane component; antirepressor regulating drug resistance protein 3969785..3970996 Shewanella amazonensis SB2B 4605589 YP_929215.1 CDS Sama_3343 NC_008700.1 3971290 3971829 D KEGG: sal:Sala_0117 methionine sulfoxide reductase A; methionine sulfoxide reductase A 3971290..3971829 Shewanella amazonensis SB2B 4605590 YP_929216.1 CDS Sama_3344 NC_008700.1 3971850 3972350 D hypothetical protein 3971850..3972350 Shewanella amazonensis SB2B 4605591 YP_929217.1 CDS Sama_3345 NC_008700.1 3972350 3972652 D KEGG: bth:BT3215 hypothetical protein; hypothetical protein 3972350..3972652 Shewanella amazonensis SB2B 4605592 YP_929218.1 CDS Sama_3346 NC_008700.1 3972956 3973504 D KEGG: tdn:Tmden_1127 HPP; hypothetical protein 3972956..3973504 Shewanella amazonensis SB2B 4605593 YP_929219.1 CDS Sama_3347 NC_008700.1 3973559 3973993 R KEGG: bpm:BURPS1710b_0248 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3973559..3973993) Shewanella amazonensis SB2B 4605594 YP_929220.1 CDS Sama_3348 NC_008700.1 3974068 3974559 D KEGG: vpa:VPA0786 hypothetical protein; hypothetical protein 3974068..3974559 Shewanella amazonensis SB2B 4605595 YP_929221.1 CDS Sama_3349 NC_008700.1 3974616 3977036 R KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein complement(3974616..3977036) Shewanella amazonensis SB2B 4605596 YP_929222.1 CDS Sama_3350 NC_008700.1 3977181 3977585 R KEGG: son:SO0309 hypothetical protein; hypothetical protein complement(3977181..3977585) Shewanella amazonensis SB2B 4605597 YP_929223.1 CDS Sama_3351 NC_008700.1 3977718 3978953 D KEGG: son:SO0308 hypothetical protein; hypothetical protein 3977718..3978953 Shewanella amazonensis SB2B 4605598 YP_929224.1 CDS Sama_3352 NC_008700.1 3979107 3980747 D KEGG: son:SO0306 hypothetical protein; hypothetical protein 3979107..3980747 Shewanella amazonensis SB2B 4605599 YP_929225.1 CDS Sama_3353 NC_008700.1 3981266 3982111 R KEGG: sdn:Sden_0274 protein of unknown function UPF0011; hypothetical protein complement(3981266..3982111) Shewanella amazonensis SB2B 4606027 YP_929226.1 CDS Sama_3354 NC_008700.1 3982242 3984029 D KEGG: son:SO0300 lipoprotein, putative; putative lipoprotein 3982242..3984029 Shewanella amazonensis SB2B 4605601 YP_929227.1 CDS Sama_3355 NC_008700.1 3984026 3984352 D KEGG: son:SO0299 predicted endonuclease; hypothetical protein 3984026..3984352 Shewanella amazonensis SB2B 4605602 YP_929228.1 CDS Sama_3356 NC_008700.1 3984459 3985052 D KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 3984459..3985052 Shewanella amazonensis SB2B 4605603 YP_929229.1 CDS Sama_3357 NC_008700.1 3985049 3985615 D KEGG: son:SO0297 lipoprotein, putative; putative lipoprotein 3985049..3985615 Shewanella amazonensis SB2B 4605604 YP_929230.1 CDS Sama_3358 NC_008700.1 3985605 3986477 R KEGG: son:SO0296 integral membrane domain protein; integral membrane domain-containing protein complement(3985605..3986477) Shewanella amazonensis SB2B 4605605 YP_929231.1 CDS Sama_3359 NC_008700.1 3986603 3987493 D KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator 3986603..3987493 Shewanella amazonensis SB2B 4605606 YP_929232.1 CDS Sama_3360 NC_008700.1 3987548 3988546 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3987548..3988546) Shewanella amazonensis SB2B 4605607 YP_929233.1 CDS Sama_3361 NC_008700.1 3988559 3989242 R KEGG: son:SO0293 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(3988559..3989242) Shewanella amazonensis SB2B 4605608 YP_929234.1 CDS Sama_3362 NC_008700.1 3989242 3989934 R KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(3989242..3989934) Shewanella amazonensis SB2B 4605609 YP_929235.1 CDS Sama_3363 NC_008700.1 3990115 3990495 D KEGG: son:SO0291 hypothetical protein; hypothetical protein 3990115..3990495 Shewanella amazonensis SB2B 4605610 YP_929236.1 CDS Sama_3364 NC_008700.1 3990507 3990689 D KEGG: son:SO0290 hypothetical protein; hypothetical protein 3990507..3990689 Shewanella amazonensis SB2B 4605611 YP_929237.1 CDS Sama_3365 NC_008700.1 3990718 3991560 R KEGG: son:SO0289 DNA adenine methylase; site-specific DNA-methyltransferase (adenine-specific) complement(3990718..3991560) Shewanella amazonensis SB2B 4605612 YP_929238.1 CDS Sama_3366 NC_008700.1 3991612 3993150 R KEGG: son:SO0288 DamX domain protein; DamX domain-containing protein complement(3991612..3993150) Shewanella amazonensis SB2B 4605613 YP_929239.1 CDS Sama_3367 NC_008700.1 3993164 3994243 R KEGG: son:SO0287 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(3993164..3994243) Shewanella amazonensis SB2B 4605614 YP_929240.1 CDS aroK NC_008700.1 3994250 3994765 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3994250..3994765) Shewanella amazonensis SB2B 4605615 YP_929241.1 CDS Sama_3369 NC_008700.1 3994976 3997033 R KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus biogenesis protein PilQ complement(3994976..3997033) Shewanella amazonensis SB2B 4605616 YP_929242.1 CDS Sama_3370 NC_008700.1 3997055 3997573 R KEGG: son:SO0284 type IV pilus biogenesis protein PilP; type IV pilus biogenesis protein PilP complement(3997055..3997573) Shewanella amazonensis SB2B 4605617 YP_929243.1 CDS Sama_3371 NC_008700.1 3997570 3998202 R KEGG: son:SO0283 type IV pilus biogenesis protein PilO; type IV pilus biogenesis protein PilO complement(3997570..3998202) Shewanella amazonensis SB2B 4605618 YP_929244.1 CDS Sama_3372 NC_008700.1 3998199 3998792 R KEGG: son:SO0282 type IV pilus biogenesis protein PilN; type IV pilus biogenesis protein PilN complement(3998199..3998792) Shewanella amazonensis SB2B 4605619 YP_929245.1 CDS Sama_3373 NC_008700.1 3998780 3999859 R KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM complement(3998780..3999859) Shewanella amazonensis SB2B 4605620 YP_929246.1 CDS Sama_3374 NC_008700.1 4000044 4002584 D KEGG: son:SO0280 penicillin-binding protein 1A; penicillin-binding protein 1A 4000044..4002584 Shewanella amazonensis SB2B 4605621 YP_929247.1 CDS Sama_3375 NC_008700.1 4002900 4004975 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4002900..4004975 Shewanella amazonensis SB2B 4605622 YP_929248.1 CDS Sama_3376 NC_008700.1 4005077 4005964 D KEGG: son:SO4365 hypothetical protein; hypothetical protein 4005077..4005964 Shewanella amazonensis SB2B 4605623 YP_929249.1 CDS Sama_3377 NC_008700.1 4006194 4006877 D KEGG: son:SO4366 hypothetical protein; hypothetical protein 4006194..4006877 Shewanella amazonensis SB2B 4605624 YP_929250.1 CDS Sama_3378 NC_008700.1 4006870 4007697 D KEGG: son:SO4367 acyltransferase family protein; acyltransferase family protein 4006870..4007697 Shewanella amazonensis SB2B 4605625 YP_929251.1 CDS Sama_3379 NC_008700.1 4007694 4007954 D KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein 4007694..4007954 Shewanella amazonensis SB2B 4605626 YP_929252.1 CDS Sama_3380 NC_008700.1 4007959 4008207 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4007959..4008207 Shewanella amazonensis SB2B 4605627 YP_929253.1 CDS Sama_3381 NC_008700.1 4008207 4008755 D KEGG: son:SO4370 hypothetical protein; hypothetical protein 4008207..4008755 Shewanella amazonensis SB2B 4605628 YP_929254.1 CDS Sama_3382 NC_008700.1 4008759 4010138 D KEGG: son:SO4371 hypothetical protein; hypothetical protein 4008759..4010138 Shewanella amazonensis SB2B 4605629 YP_929255.1 CDS Sama_3383 NC_008700.1 4010131 4010493 D KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein 4010131..4010493 Shewanella amazonensis SB2B 4605630 YP_929256.1 CDS Sama_3384 NC_008700.1 4010493 4012151 D KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 4010493..4012151 Shewanella amazonensis SB2B 4605631 YP_929257.1 CDS Sama_3385 NC_008700.1 4012189 4013745 D KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase 4012189..4013745 Shewanella amazonensis SB2B 4605632 YP_929258.1 CDS Sama_3386 NC_008700.1 4013742 4014173 D KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 4013742..4014173 Shewanella amazonensis SB2B 4605633 YP_929259.1 CDS Sama_3387 NC_008700.1 4014228 4014959 D KEGG: son:SO4376 hypothetical protein; hypothetical protein 4014228..4014959 Shewanella amazonensis SB2B 4605634 YP_929260.1 CDS Sama_3388 NC_008700.1 4014965 4017364 D KEGG: son:SO4377 hypothetical protein; hypothetical protein 4014965..4017364 Shewanella amazonensis SB2B 4605635 YP_929261.1 CDS Sama_3389 NC_008700.1 4017365 4018639 D KEGG: son:SO4378 FAD-binding protein; FAD-binding protein 4017365..4018639 Shewanella amazonensis SB2B 4605636 YP_929262.1 CDS Sama_3390 NC_008700.1 4018639 4019307 D KEGG: son:SO4379 hypothetical protein; hypothetical protein 4018639..4019307 Shewanella amazonensis SB2B 4605637 YP_929263.1 CDS Sama_3391 NC_008700.1 4019353 4020558 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4019353..4020558 Shewanella amazonensis SB2B 4605638 YP_929264.1 CDS Sama_3392 NC_008700.1 4020551 4021054 D KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein 4020551..4021054 Shewanella amazonensis SB2B 4605639 YP_929265.1 CDS fabG NC_008700.1 4021070 4021795 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4021070..4021795 Shewanella amazonensis SB2B 4605640 YP_929266.1 CDS Sama_3394 NC_008700.1 4021792 4023024 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4021792..4023024 Shewanella amazonensis SB2B 4605641 YP_929267.1 CDS Sama_3395 NC_008700.1 4023059 4023799 D KEGG: son:SO4384 hypothetical protein; hypothetical protein 4023059..4023799 Shewanella amazonensis SB2B 4605642 YP_929268.1 CDS Sama_3396 NC_008700.1 4023806 4024936 R KEGG: eba:ebA192 hypothetical protein; response regulator receiver protein complement(4023806..4024936) Shewanella amazonensis SB2B 4605643 YP_929269.1 CDS Sama_3397 NC_008700.1 4025099 4025416 D KEGG: son:SO4394 phage shock protein E; phage shock protein E 4025099..4025416 Shewanella amazonensis SB2B 4605644 YP_929270.1 CDS Sama_3398 NC_008700.1 4025623 4026213 R KEGG: sdn:Sden_3478 (acyl-carrier protein) phosphodiesterase; ACP phosphodiesterase complement(4025623..4026213) Shewanella amazonensis SB2B 4605645 YP_929271.1 CDS Sama_3399 NC_008700.1 4026371 4026946 R hypothetical protein complement(4026371..4026946) Shewanella amazonensis SB2B 4605646 YP_929272.1 CDS Sama_3400 NC_008700.1 4026959 4028179 R KEGG: mag:amb2240 TPR repeat; typically periplasmic; contain C-terminal PDZ domain; trypsin-like serine protease complement(4026959..4028179) Shewanella amazonensis SB2B 4605647 YP_929273.1 CDS Sama_3401 NC_008700.1 4028324 4028767 R KEGG: son:SO4397 hypothetical acetyltransferase; acetyltransferase complement(4028324..4028767) Shewanella amazonensis SB2B 4605648 YP_929274.1 CDS Sama_3402 NC_008700.1 4028769 4029206 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4028769..4029206) Shewanella amazonensis SB2B 4605649 YP_929275.1 CDS Sama_3403 NC_008700.1 4029278 4030165 R KEGG: son:SO4400 proline iminopeptidase, putative; proline iminopeptidase complement(4029278..4030165) Shewanella amazonensis SB2B 4605650 YP_929276.1 CDS rbn NC_008700.1 4030230 4031141 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(4030230..4031141) Shewanella amazonensis SB2B 4605651 YP_929277.1 CDS Sama_3405 NC_008700.1 4031294 4031515 D KEGG: son:SO4402 hypothetical protein; hypothetical protein 4031294..4031515 Shewanella amazonensis SB2B 4605652 YP_929278.1 CDS Sama_3406 NC_008700.1 4031533 4032186 D KEGG: son:SO4403 hypothetical protein; hypothetical protein 4031533..4032186 Shewanella amazonensis SB2B 4605653 YP_929279.1 CDS Sama_3407 NC_008700.1 4032248 4033141 R KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein complement(4032248..4033141) Shewanella amazonensis SB2B 4605654 YP_929280.1 CDS Sama_3408 NC_008700.1 4033138 4034487 R KEGG: vch:VCA0960 GGDEF family protein; diguanylate cyclase complement(4033138..4034487) Shewanella amazonensis SB2B 4605655 YP_929281.1 CDS Sama_3409 NC_008700.1 4034688 4034987 D KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 4034688..4034987 Shewanella amazonensis SB2B 4605656 YP_929282.1 CDS Sama_3410 NC_008700.1 4034984 4036543 D KEGG: son:SO3407 hypothetical protein; hypothetical protein 4034984..4036543 Shewanella amazonensis SB2B 4605657 YP_929283.1 CDS Sama_3411 NC_008700.1 4036540 4036869 D hypothetical protein 4036540..4036869 Shewanella amazonensis SB2B 4605658 YP_929284.1 CDS Sama_3412 NC_008700.1 4036983 4039058 D KEGG: ana:alr2175 ferrichrome iron receptor; ferrichrome iron receptor 4036983..4039058 Shewanella amazonensis SB2B 4605659 YP_929285.1 CDS Sama_3413 NC_008700.1 4039063 4040133 D KEGG: cps:CPS_2723 putative iron-regulated membrane protein; putative iron-regulated membrane protein 4039063..4040133 Shewanella amazonensis SB2B 4605660 YP_929286.1 CDS Sama_3414 NC_008700.1 4040377 4042410 D KEGG: vch:VCA0813 aminopeptidase; aminopeptidase-like protein 4040377..4042410 Shewanella amazonensis SB2B 4605661 YP_929287.1 CDS Sama_3415 NC_008700.1 4042462 4044276 R KEGG: son:SO4408 virulence regulator BipA; virulence regulator BipA complement(4042462..4044276) Shewanella amazonensis SB2B 4605662 YP_929288.1 CDS glnA NC_008700.1 4044735 4046144 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4044735..4046144 Shewanella amazonensis SB2B 4605663 YP_929289.1 CDS Sama_3417 NC_008700.1 4046290 4047405 R KEGG: son:SO4413 hypothetical kynureninase; kynureninase complement(4046290..4047405) Shewanella amazonensis SB2B 4605664 YP_929290.1 CDS Sama_3418 NC_008700.1 4047402 4048580 R KEGG: son:SO4414 hypothetical protein; hypothetical protein complement(4047402..4048580) Shewanella amazonensis SB2B 4605665 YP_929291.1 CDS Sama_3419 NC_008700.1 4048733 4049197 D KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator 4048733..4049197 Shewanella amazonensis SB2B 4605666 YP_929292.1 CDS Sama_3420 NC_008700.1 4049302 4049853 D KEGG: hch:HCH_00993 hypothetical protein; hypothetical protein 4049302..4049853 Shewanella amazonensis SB2B 4605667 YP_929293.1 CDS Sama_3421 NC_008700.1 4049872 4050498 D KEGG: cjk:jk1275 peptidase E; peptidase E-like protein 4049872..4050498 Shewanella amazonensis SB2B 4605668 YP_929294.1 CDS Sama_3422 NC_008700.1 4050719 4052848 D KEGG: son:SO4465 hypothetical protein; hypothetical protein 4050719..4052848 Shewanella amazonensis SB2B 4605669 YP_929295.1 CDS Sama_3423 NC_008700.1 4053158 4054705 R KEGG: pha:PSHAa0989 transporter; transporter complement(4053158..4054705) Shewanella amazonensis SB2B 4605670 YP_929296.1 CDS Sama_3424 NC_008700.1 4054922 4055230 D KEGG: son:SO4467 hypothetical protein; hypothetical protein 4054922..4055230 Shewanella amazonensis SB2B 4605671 YP_929297.1 CDS Sama_3425 NC_008700.1 4055332 4055868 D KEGG: son:SO4470 hypothetical protein; hypothetical protein 4055332..4055868 Shewanella amazonensis SB2B 4605672 YP_929298.1 CDS Sama_3426 NC_008700.1 4055995 4057041 D KEGG: son:SO4471 nitrogen regulation protein; nitrogen regulation protein 4055995..4057041 Shewanella amazonensis SB2B 4605673 YP_929299.1 CDS Sama_3427 NC_008700.1 4057060 4058472 D KEGG: son:SO4472 nitrogen regulation protein NR(I); response regulator receiver protein 4057060..4058472 Shewanella amazonensis SB2B 4605674 YP_929300.1 CDS Sama_3428 NC_008700.1 4058538 4059083 R KEGG: son:SO4473 outer membrane protein, putative; outer membrane protein complement(4058538..4059083) Shewanella amazonensis SB2B 4605675 YP_929301.1 CDS Sama_3429 NC_008700.1 4059339 4059908 R KEGG: son:SO4473 outer membrane protein, putative; outer membrane protein complement(4059339..4059908) Shewanella amazonensis SB2B 4605676 YP_929302.1 CDS Sama_3430 NC_008700.1 4060090 4060959 R KEGG: son:SO4475 cation efflux family protein; cation efflux family protein complement(4060090..4060959) Shewanella amazonensis SB2B 4605677 YP_929303.1 CDS Sama_3431 NC_008700.1 4061083 4061574 R KEGG: son:SO4476 spheroplast protein y precursor, putative; spheroplast protein y complement(4061083..4061574) Shewanella amazonensis SB2B 4605678 YP_929304.1 CDS Sama_3432 NC_008700.1 4061772 4062458 D KEGG: sdn:Sden_3461 response regulator receiver; response regulator receiver protein 4061772..4062458 Shewanella amazonensis SB2B 4605679 YP_929305.1 CDS Sama_3433 NC_008700.1 4062455 4063816 D KEGG: son:SO4478 sensor protein CpxA; sensor protein CpxA 4062455..4063816 Shewanella amazonensis SB2B 4605680 YP_929306.1 CDS Sama_3434 NC_008700.1 4063864 4065672 R KEGG: son:SO4479 sigma-54 dependent transcriptional regulator; sigma-54 dependent transcriptional regulator complement(4063864..4065672) Shewanella amazonensis SB2B 4605681 YP_929307.1 CDS Sama_3435 NC_008700.1 4065948 4067468 D KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase 4065948..4067468 Shewanella amazonensis SB2B 4605682 YP_929308.1 CDS Sama_3436 NC_008700.1 4067618 4068661 D KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 4067618..4068661 Shewanella amazonensis SB2B 4605683 YP_929309.1 CDS Sama_3437 NC_008700.1 4068658 4069269 D KEGG: sdn:Sden_2225 hypothetical protein; hypothetical protein 4068658..4069269 Shewanella amazonensis SB2B 4605684 YP_929310.1 CDS Sama_3438 NC_008700.1 4069273 4069728 D KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; isoquinoline 1-oxidoreductase subunit alpha 4069273..4069728 Shewanella amazonensis SB2B 4605685 YP_929311.1 CDS Sama_3439 NC_008700.1 4069725 4071977 D KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; isoquinoline 1-oxidoreductase subunit beta 4069725..4071977 Shewanella amazonensis SB2B 4605686 YP_929312.1 CDS Sama_3440 NC_008700.1 4072076 4072552 D KEGG: sdn:Sden_3484 RNA methyltransferase TrmH, group 2; RNA methyl transferase TrmH 4072076..4072552 Shewanella amazonensis SB2B 4605687 YP_929313.1 CDS Sama_3441 NC_008700.1 4072559 4073062 R KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein complement(4072559..4073062) Shewanella amazonensis SB2B 4605688 YP_929314.1 CDS Sama_3442 NC_008700.1 4073079 4073654 R KEGG: dar:Daro_0041 hypothetical protein; hypothetical protein complement(4073079..4073654) Shewanella amazonensis SB2B 4605689 YP_929315.1 CDS Sama_3443 NC_008700.1 4073820 4075241 R KEGG: sdn:Sden_3485 peptidase M16-like protein; peptidase M16-like protein complement(4073820..4075241) Shewanella amazonensis SB2B 4605690 YP_929316.1 CDS Sama_3444 NC_008700.1 4075238 4076569 R KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; hypothetical protein complement(4075238..4076569) Shewanella amazonensis SB2B 4605691 YP_929317.1 CDS Sama_3445 NC_008700.1 4076771 4077412 R KEGG: son:SO4550 methyltransferase domain protein; methyltransferase domain-containing protein complement(4076771..4077412) Shewanella amazonensis SB2B 4605692 YP_929318.1 CDS Sama_3446 NC_008700.1 4077409 4077759 R KEGG: son:SO4551 hypothetical protein; hypothetical protein complement(4077409..4077759) Shewanella amazonensis SB2B 4605693 YP_929319.1 CDS Sama_3447 NC_008700.1 4077855 4078484 R KEGG: son:SO4554 hypothetical protein; hypothetical protein complement(4077855..4078484) Shewanella amazonensis SB2B 4605694 YP_929320.1 CDS Sama_3448 NC_008700.1 4078575 4079777 R KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA family multidrug resistance transporter complement(4078575..4079777) Shewanella amazonensis SB2B 4605695 YP_929321.1 CDS Sama_3449 NC_008700.1 4079887 4080867 D KEGG: sdn:Sden_3495 regulatory protein, LysR; regulatory protein LysR 4079887..4080867 Shewanella amazonensis SB2B 4605696 YP_929322.1 CDS Sama_3450 NC_008700.1 4080937 4081272 D KEGG: son:SO4558 hypothetical protein; hypothetical protein 4080937..4081272 Shewanella amazonensis SB2B 4605697 YP_929323.1 CDS Sama_3451 NC_008700.1 4081288 4082715 R KEGG: son:SO4559 hypothetical protein; hypothetical protein complement(4081288..4082715) Shewanella amazonensis SB2B 4605698 YP_929324.1 CDS Sama_3452 NC_008700.1 4082728 4083429 R KEGG: son:SO4560 hypothetical protein; hypothetical protein complement(4082728..4083429) Shewanella amazonensis SB2B 4605699 YP_929325.1 CDS Sama_3453 NC_008700.1 4083660 4084202 D KEGG: son:SO4561 hypothetical protein; hypothetical protein 4083660..4084202 Shewanella amazonensis SB2B 4605700 YP_929326.1 CDS Sama_3454 NC_008700.1 4084228 4084665 D KEGG: son:SO4562 hypothetical protein; hypothetical protein 4084228..4084665 Shewanella amazonensis SB2B 4605701 YP_929327.1 CDS Sama_3455 NC_008700.1 4084662 4085486 R KEGG: son:SO4563 hypothetical protein; putative signal transduction protein complement(4084662..4085486) Shewanella amazonensis SB2B 4605702 YP_929328.1 CDS Sama_3456 NC_008700.1 4085549 4086304 R KEGG: cps:CPS_0687 hypothetical protein; hypothetical protein complement(4085549..4086304) Shewanella amazonensis SB2B 4605703 YP_929329.1 CDS Sama_3457 NC_008700.1 4086479 4087087 D KEGG: son:SO4564 TonB2 protein, putative; TonB2 protein 4086479..4087087 Shewanella amazonensis SB2B 4605704 YP_929330.1 CDS Sama_3458 NC_008700.1 4087084 4088340 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4087084..4088340) Shewanella amazonensis SB2B 4605705 YP_929331.1 CDS Sama_3459 NC_008700.1 4088507 4088938 D KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4088507..4088938 Shewanella amazonensis SB2B 4605706 YP_929332.1 CDS Sama_3460 NC_008700.1 4089221 4090939 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4089221..4090939 Shewanella amazonensis SB2B 4605707 YP_929333.1 CDS Sama_3461 NC_008700.1 4090921 4091754 D KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 4090921..4091754 Shewanella amazonensis SB2B 4605708 YP_929334.1 CDS Sama_3462 NC_008700.1 4091747 4092850 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4091747..4092850 Shewanella amazonensis SB2B 4605709 YP_929335.1 CDS Sama_3463 NC_008700.1 4092847 4094280 D KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; O-succinylbenzoic acid--CoA ligase 4092847..4094280 Shewanella amazonensis SB2B 4605710 YP_929336.1 CDS Sama_3464 NC_008700.1 4094397 4094843 R KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase complement(4094397..4094843) Shewanella amazonensis SB2B 4605711 YP_929337.1 CDS Sama_3465 NC_008700.1 4095007 4095864 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4095007..4095864) Shewanella amazonensis SB2B 4605712 YP_929338.1 CDS Sama_3466 NC_008700.1 4096077 4097042 R KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; cell division ABC transporter permease FtsX complement(4096077..4097042) Shewanella amazonensis SB2B 4605713 YP_929339.1 CDS Sama_3467 NC_008700.1 4097052 4097741 R KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; cell division ABC transporter ATP-binding protein FtsE complement(4097052..4097741) Shewanella amazonensis SB2B 4605714 YP_929340.1 CDS Sama_3468 NC_008700.1 4097738 4099429 R KEGG: son:SO4586 cell division protein FtsY; cell division protein FtsY complement(4097738..4099429) Shewanella amazonensis SB2B 4605715 YP_929341.1 CDS Sama_3469 NC_008700.1 4099544 4100173 D KEGG: sdn:Sden_3506 conserved hypothetical protein 95; hypothetical protein 4099544..4100173 Shewanella amazonensis SB2B 4605716 YP_929342.1 CDS Sama_3470 NC_008700.1 4100173 4100466 D KEGG: son:SO4588 hypothetical protein; hypothetical protein 4100173..4100466 Shewanella amazonensis SB2B 4605717 YP_929343.1 CDS Sama_3471 NC_008700.1 4100553 4101116 R KEGG: son:SO4591 tetraheme cytochrome c; tetraheme cytochrome c complement(4100553..4101116) Shewanella amazonensis SB2B 4605718 YP_929344.1 CDS Sama_3472 NC_008700.1 4101592 4102041 D KEGG: son:SO4594 hypothetical protein; hypothetical protein 4101592..4102041 Shewanella amazonensis SB2B 4605719 YP_929345.1 CDS Sama_3473 NC_008700.1 4102098 4102448 D KEGG: son:SOA0155 hypothetical protein; hypothetical protein 4102098..4102448 Shewanella amazonensis SB2B 4605720 YP_929346.1 CDS Sama_3474 NC_008700.1 4102477 4104057 D KEGG: son:SO4597 heavy metal efflux system protein, putative; heavy metal efflux system protein 4102477..4104057 Shewanella amazonensis SB2B 4605721 YP_929347.1 CDS Sama_3475 NC_008700.1 4104067 4107213 D KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4104067..4107213 Shewanella amazonensis SB2B 4605722 YP_929348.1 CDS Sama_3476 NC_008700.1 4107303 4108274 D KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 family protein 4107303..4108274 Shewanella amazonensis SB2B 4605723 YP_929349.1 CDS Sama_3477 NC_008700.1 4108295 4109071 R KEGG: sdn:Sden_3512 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4108295..4109071) Shewanella amazonensis SB2B 4605724 YP_929350.1 CDS Sama_3478 NC_008700.1 4109170 4109595 D KEGG: cvi:CV2936 probable bacterial hemoglobin; putative hemoglobin 4109170..4109595 Shewanella amazonensis SB2B 4605725 YP_929351.1 CDS Sama_3479 NC_008700.1 4109766 4111022 R KEGG: sdn:Sden_3513 aromatic amino acid transport protein; aromatic amino acid transport protein complement(4109766..4111022) Shewanella amazonensis SB2B 4606028 YP_929352.1 CDS Sama_3480 NC_008700.1 4111022 4113445 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4111022..4113445) Shewanella amazonensis SB2B 4605727 YP_929353.1 CDS Sama_3481 NC_008700.1 4113597 4114220 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4113597..4114220 Shewanella amazonensis SB2B 4605728 YP_929354.1 CDS Sama_3482 NC_008700.1 4114217 4114723 D KEGG: son:SO4604 hypothetical protein; hypothetical protein 4114217..4114723 Shewanella amazonensis SB2B 4605729 YP_929355.1 CDS Sama_3483 NC_008700.1 4115112 4116674 D KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4115112..4116674 Shewanella amazonensis SB2B 4605730 YP_929356.1 CDS Sama_3484 NC_008700.1 4116685 4118280 D KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase 4116685..4118280 Shewanella amazonensis SB2B 4605731 YP_929357.1 CDS Sama_3485 NC_008700.1 4118282 4118848 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4118282..4118848 Shewanella amazonensis SB2B 4605732 YP_929358.1 CDS Sama_3486 NC_008700.1 4118845 4119720 D KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 4118845..4119720 Shewanella amazonensis SB2B 4605733 YP_929359.1 CDS Sama_3487 NC_008700.1 4119723 4119938 R KEGG: vvy:VVA1111 hypothetical protein; hypothetical protein complement(4119723..4119938) Shewanella amazonensis SB2B 4605734 YP_929360.1 CDS Sama_3488 NC_008700.1 4119982 4120686 D KEGG: sdn:Sden_3521 hypothetical protein; hypothetical protein 4119982..4120686 Shewanella amazonensis SB2B 4605735 YP_929361.1 CDS Sama_3489 NC_008700.1 4120715 4121257 D KEGG: son:SO4612 hypothetical protein; hypothetical protein 4120715..4121257 Shewanella amazonensis SB2B 4605736 YP_929362.1 CDS Sama_3490 NC_008700.1 4121257 4122240 D KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly 4121257..4122240 Shewanella amazonensis SB2B 4605737 YP_929363.1 CDS Sama_3491 NC_008700.1 4122255 4123154 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4122255..4123154 Shewanella amazonensis SB2B 4605738 YP_929364.1 CDS Sama_3492 NC_008700.1 4123163 4123798 D KEGG: sdn:Sden_3525 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4123163..4123798 Shewanella amazonensis SB2B 4605739 YP_929365.1 CDS Sama_3493 NC_008700.1 4123967 4124248 D hypothetical protein 4123967..4124248 Shewanella amazonensis SB2B 4605740 YP_929366.1 CDS Sama_3494 NC_008700.1 4124263 4124625 D KEGG: hch:HCH_00454 FOG: CheY-like receiver; response regulator receiver protein 4124263..4124625 Shewanella amazonensis SB2B 4605741 YP_929367.1 CDS Sama_3495 NC_008700.1 4124645 4126732 D KEGG: hch:HCH_00455 chemotaxis protein histidine kinase and related kinase; putative CheA signal transduction histidine kinase 4124645..4126732 Shewanella amazonensis SB2B 4605742 YP_929368.1 CDS Sama_3496 NC_008700.1 4126748 4127287 D KEGG: sde:Sde_3106 biotin synthase; biotin synthase 4126748..4127287 Shewanella amazonensis SB2B 4605743 YP_929369.1 CDS Sama_3497 NC_008700.1 4127316 4129898 D KEGG: cvi:CV3438 probable methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4127316..4129898 Shewanella amazonensis SB2B 4605744 YP_929370.1 CDS Sama_3498 NC_008700.1 4130000 4130821 D KEGG: sde:Sde_3104 biotin biosynthesis protein BioC; protein-glutamate O-methyltransferase 4130000..4130821 Shewanella amazonensis SB2B 4605745 YP_929371.1 CDS Sama_3499 NC_008700.1 4130818 4131837 D KEGG: xom:XOO_2714 glutamate methylesterase; protein-glutamate methylesterase 4130818..4131837 Shewanella amazonensis SB2B 4605746 YP_929372.1 CDS Sama_3500 NC_008700.1 4131834 4132883 R KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase family protein complement(4131834..4132883) Shewanella amazonensis SB2B 4605747 YP_929373.1 CDS Sama_3501 NC_008700.1 4132918 4134231 D KEGG: son:SO4617 DNA-damage-inducible protein F; DNA-damage-inducible protein F 4132918..4134231 Shewanella amazonensis SB2B 4605748 YP_929374.1 CDS Sama_3502 NC_008700.1 4134324 4134902 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(4134324..4134902) Shewanella amazonensis SB2B 4605749 YP_929375.1 CDS Sama_3503 NC_008700.1 4135123 4137618 D KEGG: pat:Patl_4232 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 4135123..4137618 Shewanella amazonensis SB2B 4605750 YP_929376.1 CDS Sama_3504 NC_008700.1 4137615 4138367 R KEGG: son:SO4625 competence protein ComF; competence protein ComF complement(4137615..4138367) Shewanella amazonensis SB2B 4605751 YP_929377.1 CDS Sama_3505 NC_008700.1 4138394 4139176 D KEGG: son:SO4626 bioH protein; bioH protein 4138394..4139176 Shewanella amazonensis SB2B 4605752 YP_929378.1 CDS Sama_3506 NC_008700.1 4139228 4139728 D KEGG: son:SO4627 hypothetical protein; hypothetical protein 4139228..4139728 Shewanella amazonensis SB2B 4605753 YP_929379.1 CDS Sama_3507 NC_008700.1 4139729 4141669 R KEGG: son:SO4628 sulfatase; sulfatase complement(4139729..4141669) Shewanella amazonensis SB2B 4605754 YP_929380.1 CDS Sama_3508 NC_008700.1 4141835 4144171 R KEGG: son:SO4629 hypothetical protein; hypothetical protein complement(4141835..4144171) Shewanella amazonensis SB2B 4605755 YP_929381.1 CDS Sama_3509 NC_008700.1 4144296 4144793 R KEGG: son:SO4631 transcription elongation factor GreB; GreA/GreB family elongation factor complement(4144296..4144793) Shewanella amazonensis SB2B 4605756 YP_929382.1 CDS ompR NC_008700.1 4144996 4145721 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4144996..4145721 Shewanella amazonensis SB2B 4605757 YP_929383.1 CDS envZ NC_008700.1 4145737 4147053 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4145737..4147053 Shewanella amazonensis SB2B 4605758 YP_929384.1 CDS Sama_3512 NC_008700.1 4147122 4149065 D KEGG: son:SO4635 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4147122..4149065 Shewanella amazonensis SB2B 4605759 YP_929385.1 CDS Sama_3513 NC_008700.1 4149078 4149551 R KEGG: son:SO4640 antioxidant, AhpC/Tsa family; anti-oxidant AhpCTSA family protein complement(4149078..4149551) Shewanella amazonensis SB2B 4605760 YP_929386.1 CDS Sama_3514 NC_008700.1 4149687 4149932 R hypothetical protein complement(4149687..4149932) Shewanella amazonensis SB2B 4605761 YP_929387.1 CDS Sama_3515 NC_008700.1 4150159 4150623 D KEGG: son:SO3697 steroid delta-isomerase domain protein; hypothetical protein 4150159..4150623 Shewanella amazonensis SB2B 4605762 YP_929388.1 CDS Sama_3516 NC_008700.1 4150616 4151038 D KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase; histone acetyltransferase HPA2/related acetyltransferase 4150616..4151038 Shewanella amazonensis SB2B 4605763 YP_929389.1 CDS Sama_3517 NC_008700.1 4151459 4152019 D KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; ribosomal-protein-serine acetyltransferase 4151459..4152019 Shewanella amazonensis SB2B 4605764 YP_929390.1 CDS Sama_3518 NC_008700.1 4152140 4153018 D KEGG: son:SO4458 carbohydrate kinase, PfkB family; carbohydrate kinase 4152140..4153018 Shewanella amazonensis SB2B 4605765 YP_929391.1 CDS Sama_3519 NC_008700.1 4153209 4153766 D KEGG: rba:RB2931 conserved hypothetical protein-putative acetyltransferase; acetyltransferase 4153209..4153766 Shewanella amazonensis SB2B 4605766 YP_929392.1 CDS Sama_3520 NC_008700.1 4153803 4154492 D KEGG: son:SO4456 hypothetical protein; hypothetical protein 4153803..4154492 Shewanella amazonensis SB2B 4605767 YP_929393.1 CDS Sama_3521 NC_008700.1 4154606 4154983 R hypothetical protein complement(4154606..4154983) Shewanella amazonensis SB2B 4605768 YP_929394.1 CDS Sama_3522 NC_008700.1 4155111 4157021 R KEGG: son:SO4454 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(4155111..4157021) Shewanella amazonensis SB2B 4605769 YP_929395.1 CDS Sama_3523 NC_008700.1 4157301 4158953 R KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase complement(4157301..4158953) Shewanella amazonensis SB2B 4605770 YP_929396.1 CDS moaA NC_008700.1 4159269 4160291 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4159269..4160291 Shewanella amazonensis SB2B 4605771 YP_929397.1 CDS Sama_3525 NC_008700.1 4160346 4160882 D KEGG: pat:Patl_2158 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 4160346..4160882 Shewanella amazonensis SB2B 4605772 YP_929398.1 CDS moaC NC_008700.1 4160879 4161352 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 4160879..4161352 Shewanella amazonensis SB2B 4605773 YP_929399.1 CDS Sama_3527 NC_008700.1 4161358 4161609 D KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdenum cofactor biosynthesis protein D 4161358..4161609 Shewanella amazonensis SB2B 4605774 YP_929400.1 CDS Sama_3528 NC_008700.1 4161611 4162069 D KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdenum cofactor biosynthesis protein E 4161611..4162069 Shewanella amazonensis SB2B 4605775 YP_929401.1 CDS Sama_3529 NC_008700.1 4162093 4162881 D KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter substrate-binding protein 4162093..4162881 Shewanella amazonensis SB2B 4605776 YP_929402.1 CDS Sama_3530 NC_008700.1 4162881 4163558 D KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdenum ABC transporter permease 4162881..4163558 Shewanella amazonensis SB2B 4605777 YP_929403.1 CDS Sama_3531 NC_008700.1 4163542 4164654 D KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; molybdenum ABC transporter ATP-binding protein 4163542..4164654 Shewanella amazonensis SB2B 4605778 YP_929404.1 CDS Sama_3532 NC_008700.1 4164724 4165086 D KEGG: pae:PA0320 hypothetical protein; hypothetical protein 4164724..4165086 Shewanella amazonensis SB2B 4605779 YP_929405.1 CDS Sama_3533 NC_008700.1 4165127 4165651 D KEGG: son:SO4429 hypothetical protein; hypothetical protein 4165127..4165651 Shewanella amazonensis SB2B 4605780 YP_929406.1 CDS Sama_3534 NC_008700.1 4165671 4166348 D KEGG: son:SO4428 DNA-binding response regulator; response regulator receiver protein 4165671..4166348 Shewanella amazonensis SB2B 4605781 YP_929407.1 CDS Sama_3535 NC_008700.1 4166398 4167657 D KEGG: son:SO4427 sensor histidine kinase; sensor histidine kinase 4166398..4167657 Shewanella amazonensis SB2B 4605782 YP_929408.1 CDS Sama_3536 NC_008700.1 4167661 4168335 D KEGG: sdn:Sden_0111 pseudouridine synthase RluA-like protein; pseudouridine synthase RluA-like protein 4167661..4168335 Shewanella amazonensis SB2B 4605783 YP_929409.1 CDS Sama_3537 NC_008700.1 4168309 4169490 R KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase complement(4168309..4169490) Shewanella amazonensis SB2B 4605784 YP_929410.1 CDS Sama_3538 NC_008700.1 4169634 4169801 D KEGG: son:SO4423 hypothetical protein; hypothetical protein 4169634..4169801 Shewanella amazonensis SB2B 4605785 YP_929411.1 CDS Sama_3539 NC_008700.1 4169943 4170797 D KEGG: cps:CPS_2971 substrate-binding transcriptional regulator, LysR family; LysR family substrate binding transcriptional regulator 4169943..4170797 Shewanella amazonensis SB2B 4605786 YP_929412.1 CDS Sama_3540 NC_008700.1 4170831 4173137 D KEGG: pha:PSHAa0079 hydrolase; penicillin amidase 4170831..4173137 Shewanella amazonensis SB2B 4605787 YP_929413.1 CDS Sama_3541 NC_008700.1 4173236 4174129 D KEGG: csa:Csal_1778 pirin-like protein; pirin-like protein 4173236..4174129 Shewanella amazonensis SB2B 4605788 YP_929414.1 CDS Sama_3542 NC_008700.1 4174196 4174591 R KEGG: bja:blr0519 hypothetical protein; hypothetical protein complement(4174196..4174591) Shewanella amazonensis SB2B 4605789 YP_929415.1 CDS Sama_3543 NC_008700.1 4174690 4176045 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(4174690..4176045) Shewanella amazonensis SB2B 4605790 YP_929416.1 CDS Sama_3544 NC_008700.1 4176165 4176770 R KEGG: son:SO4701 hypothetical protein; hypothetical protein complement(4176165..4176770) Shewanella amazonensis SB2B 4605791 YP_929417.1 CDS Sama_3545 NC_008700.1 4176881 4177573 R KEGG: son:SO4700 hypothetical protein; hypothetical protein complement(4176881..4177573) Shewanella amazonensis SB2B 4605792 YP_929418.1 CDS Sama_3546 NC_008700.1 4177877 4179913 D KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 4177877..4179913 Shewanella amazonensis SB2B 4605793 YP_929419.1 CDS Sama_3547 NC_008700.1 4179990 4180583 D KEGG: son:SO4698 hypothetical protein; hypothetical protein 4179990..4180583 Shewanella amazonensis SB2B 4605794 YP_929420.1 CDS Sama_3548 NC_008700.1 4180580 4181233 R KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase complement(4180580..4181233) Shewanella amazonensis SB2B 4605795 YP_929421.1 CDS Sama_3549 NC_008700.1 4181280 4182179 R KEGG: rsp:RSP_0927 transcriptional regulator, LyrR family; LyrR family transcriptional regulator complement(4181280..4182179) Shewanella amazonensis SB2B 4605796 YP_929422.1 CDS Sama_3550 NC_008700.1 4182295 4183149 D KEGG: hch:HCH_01282 predicted nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 4182295..4183149 Shewanella amazonensis SB2B 4605797 YP_929423.1 CDS Sama_3551 NC_008700.1 4183196 4183882 D KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 4183196..4183882 Shewanella amazonensis SB2B 4605798 YP_929424.1 CDS Sama_3552 NC_008700.1 4183879 4184613 R KEGG: son:SO4694 hypothetical protein; hypothetical protein complement(4183879..4184613) Shewanella amazonensis SB2B 4605799 YP_929425.1 CDS Sama_3553 NC_008700.1 4184976 4186112 D KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; multidrug resistance protein AcrA/AcrE family 4184976..4186112 Shewanella amazonensis SB2B 4605800 YP_929426.1 CDS Sama_3554 NC_008700.1 4186156 4189296 D KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 4186156..4189296 Shewanella amazonensis SB2B 4605801 YP_929427.1 CDS Sama_3555 NC_008700.1 4189384 4189680 R hypothetical protein complement(4189384..4189680) Shewanella amazonensis SB2B 4605802 YP_929428.1 CDS Sama_3556 NC_008700.1 4190239 4191237 R KEGG: son:SO4661 hypothetical protein; hypothetical protein complement(4190239..4191237) Shewanella amazonensis SB2B 4605803 YP_929429.1 CDS Sama_3557 NC_008700.1 4191291 4191740 R KEGG: eca:ECA0873 hypothetical protein; hypothetical protein complement(4191291..4191740) Shewanella amazonensis SB2B 4605804 YP_929430.1 CDS Sama_3558 NC_008700.1 4192005 4193357 D KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 4192005..4193357 Shewanella amazonensis SB2B 4605805 YP_929431.1 CDS Sama_3559 NC_008700.1 4193424 4195031 R KEGG: ppr:PBPRA0142 putative efflux pump component MtrF; putative efflux pump component MtrF complement(4193424..4195031) Shewanella amazonensis SB2B 4605806 YP_929432.1 CDS Sama_3560 NC_008700.1 4195668 4196237 D KEGG: son:SO4662 lemA protein; hypothetical protein 4195668..4196237 Shewanella amazonensis SB2B 4605807 YP_929433.1 CDS Sama_3561 NC_008700.1 4196242 4197258 D KEGG: son:SO4661 hypothetical protein; hypothetical protein 4196242..4197258 Shewanella amazonensis SB2B 4605808 YP_929434.1 CDS Sama_3562 NC_008700.1 4197258 4197938 D KEGG: son:SO4660 transglycosylase SLT domain protein; transglycosylase 4197258..4197938 Shewanella amazonensis SB2B 4605809 YP_929435.1 CDS Sama_3563 NC_008700.1 4198047 4198901 R KEGG: son:SO4659 hypothetical protein; hypothetical protein complement(4198047..4198901) Shewanella amazonensis SB2B 4605810 YP_929436.1 CDS Sama_3564 NC_008700.1 4199036 4199782 D KEGG: sdn:Sden_3610 protein of unknown function DUF548; hypothetical protein 4199036..4199782 Shewanella amazonensis SB2B 4605811 YP_929437.1 CDS Sama_3565 NC_008700.1 4199788 4200663 R KEGG: vvu:VV20326 permease of the drug/metabolite transporter (DMT) superfamily; DMT family permease complement(4199788..4200663) Shewanella amazonensis SB2B 4605812 YP_929438.1 CDS Sama_3566 NC_008700.1 4200761 4201255 D KEGG: vpa:VP1763 transcriptional regulator, MarR family; MarR family transcriptional regulator 4200761..4201255 Shewanella amazonensis SB2B 4605813 YP_929439.1 CDS Sama_3567 NC_008700.1 4202259 4202561 R KEGG: cps:CPS_0172 hypothetical protein; hypothetical protein complement(4202259..4202561) Shewanella amazonensis SB2B 4605814 YP_929440.1 CDS Sama_3568 NC_008700.1 4202644 4203390 R KEGG: son:SO0736 conserved hypothetical protein; hypothetical protein complement(4202644..4203390) Shewanella amazonensis SB2B 4605815 YP_929441.1 CDS Sama_3569 NC_008700.1 4203638 4205821 D KEGG: sdn:Sden_0824 protein of unknown function DUF181; hypothetical protein 4203638..4205821 Shewanella amazonensis SB2B 4605816 YP_929442.1 CDS Sama_3570 NC_008700.1 4205962 4206360 R KEGG: sdn:Sden_0073 thioesterase superfamily; thioesterase superfamily protein complement(4205962..4206360) Shewanella amazonensis SB2B 4605817 YP_929443.1 CDS Sama_3571 NC_008700.1 4206476 4208269 R KEGG: son:SO0075 AMP-binding family protein; AMP-binding family protein complement(4206476..4208269) Shewanella amazonensis SB2B 4605818 YP_929444.1 CDS Sama_3572 NC_008700.1 4208449 4209690 R KEGG: son:SO0074 hypothetical protein; hypothetical protein complement(4208449..4209690) Shewanella amazonensis SB2B 4605819 YP_929445.1 CDS Sama_3573 NC_008700.1 4209687 4210541 R KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein complement(4209687..4210541) Shewanella amazonensis SB2B 4605820 YP_929446.1 CDS Sama_3574 NC_008700.1 4210552 4210923 R KEGG: son:SO0072 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4210552..4210923) Shewanella amazonensis SB2B 4605821 YP_929447.1 CDS Sama_3575 NC_008700.1 4211013 4212536 D KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; alpha/beta fold family hydrolase 4211013..4212536 Shewanella amazonensis SB2B 4605822 YP_929448.1 CDS Sama_3576 NC_008700.1 4212540 4213274 D KEGG: son:SO0070 ATP-binding transport protein NatA; ATP-binding transport protein NatA 4212540..4213274 Shewanella amazonensis SB2B 4605823 YP_929449.1 CDS Sama_3577 NC_008700.1 4213271 4214407 D KEGG: son:SO0069 transport protein, putative; transporter 4213271..4214407 Shewanella amazonensis SB2B 4605824 YP_929450.1 CDS Sama_3578 NC_008700.1 4214486 4214698 D hypothetical protein 4214486..4214698 Shewanella amazonensis SB2B 4605825 YP_929451.1 CDS Sama_3579 NC_008700.1 4214776 4215063 D hypothetical protein 4214776..4215063 Shewanella amazonensis SB2B 4605826 YP_929452.1 CDS Sama_3580 NC_008700.1 4215225 4215650 D KEGG: hch:HCH_00041 molecular chaperone (small heat shock protein); molecular chaperone 4215225..4215650 Shewanella amazonensis SB2B 4605827 YP_929453.1 CDS Sama_3581 NC_008700.1 4216162 4217100 D KEGG: son:SO0928 GGDEF domain protein protein; diguanylate cyclase 4216162..4217100 Shewanella amazonensis SB2B 4605828 YP_929454.1 CDS Sama_3582 NC_008700.1 4217119 4217526 R KEGG: pat:Patl_2820 hypothetical protein; hypothetical protein complement(4217119..4217526) Shewanella amazonensis SB2B 4605829 YP_929455.1 CDS Sama_3583 NC_008700.1 4217714 4218046 D KEGG: shm:Shewmr7_0578 thioredoxin domain; thioredoxin domain-containing protein 4217714..4218046 Shewanella amazonensis SB2B 4605830 YP_929456.1 CDS Sama_3584 NC_008700.1 4218117 4218443 R hypothetical protein complement(4218117..4218443) Shewanella amazonensis SB2B 4605831 YP_929457.1 CDS Sama_3585 NC_008700.1 4218654 4218965 D KEGG: sdn:Sden_2842 hypothetical protein; hypothetical protein 4218654..4218965 Shewanella amazonensis SB2B 4605832 YP_929458.1 CDS Sama_3586 NC_008700.1 4219015 4219620 R KEGG: hch:HCH_01941 predicted membrane protein; membrane protein complement(4219015..4219620) Shewanella amazonensis SB2B 4605833 YP_929459.1 CDS Sama_3587 NC_008700.1 4219699 4220826 R KEGG: son:SO1707 ABC transporter, permease protein, putative; ABC transporter permease complement(4219699..4220826) Shewanella amazonensis SB2B 4605834 YP_929460.1 CDS Sama_3588 NC_008700.1 4220816 4221784 R KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component; putative multidrug ABC transporter, ATPase complement(4220816..4221784) Shewanella amazonensis SB2B 4605835 YP_929461.1 CDS Sama_3589 NC_008700.1 4221777 4222739 R KEGG: son:SO1705 putative HlyD family secretion protein; HlyD family secretion protein complement(4221777..4222739) Shewanella amazonensis SB2B 4605836 YP_929462.1 CDS Sama_3590 NC_008700.1 4222736 4223377 R KEGG: vvy:VVA0159 transcriptional regulator; TetR family transcriptional regulator complement(4222736..4223377) Shewanella amazonensis SB2B 4605837 YP_929463.1 CDS Sama_3591 NC_008700.1 4223587 4223886 D hypothetical protein 4223587..4223886 Shewanella amazonensis SB2B 4605838 YP_929464.1 CDS Sama_3592 NC_008700.1 4223925 4224677 R KEGG: son:SO3975 hypothetical protein; hypothetical protein complement(4223925..4224677) Shewanella amazonensis SB2B 4605839 YP_929465.1 CDS Sama_3593 NC_008700.1 4224835 4225863 R KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4224835..4225863) Shewanella amazonensis SB2B 4605840 YP_929466.1 CDS Sama_3594 NC_008700.1 4226151 4227281 R KEGG: hch:HCH_03702 response regulator containing a CheY-like receiver domain and an HD-GYP domain; response regulator receiver protein complement(4226151..4227281) Shewanella amazonensis SB2B 4605841 YP_929467.1 CDS Sama_3595 NC_008700.1 4227281 4227877 R KEGG: dde:Dde_1943 histidine kinase; histidine kinase complement(4227281..4227877) Shewanella amazonensis SB2B 4605842 YP_929468.1 CDS Sama_3596 NC_008700.1 4228104 4230842 D KEGG: sde:Sde_1689 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 4228104..4230842 Shewanella amazonensis SB2B 4605843 YP_929469.1 CDS Sama_3597 NC_008700.1 4231044 4231457 D KEGG: vpa:VP1790 hypothetical protein; hypothetical protein 4231044..4231457 Shewanella amazonensis SB2B 4605844 YP_929470.1 CDS Sama_3598 NC_008700.1 4231474 4232712 R KEGG: vvy:VV1004 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer complement(4231474..4232712) Shewanella amazonensis SB2B 4605845 YP_929471.1 CDS Sama_3599 NC_008700.1 4232852 4233490 D KEGG: pat:Patl_3840 abortive infection protein; abortive infection protein 4232852..4233490 Shewanella amazonensis SB2B 4605846 YP_929472.1 CDS Sama_3600 NC_008700.1 4233484 4234992 R KEGG: pca:Pcar_2937 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; putative diguanylate phosphodiesterase complement(4233484..4234992) Shewanella amazonensis SB2B 4605847 YP_929473.1 CDS Sama_3601 NC_008700.1 4235209 4235808 R KEGG: sdn:Sden_2490 pentapeptide repeat; pentapeptide repeat-containing protein complement(4235209..4235808) Shewanella amazonensis SB2B 4605848 YP_929474.1 CDS Sama_3602 NC_008700.1 4236104 4238020 D hypothetical protein 4236104..4238020 Shewanella amazonensis SB2B 4605849 YP_929475.1 CDS Sama_3603 NC_008700.1 4238369 4240294 D KEGG: bba:Bd3766 hypothetical protein; diguanylate cyclase 4238369..4240294 Shewanella amazonensis SB2B 4605850 YP_929476.1 CDS Sama_3604 NC_008700.1 4240343 4241677 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4240343..4241677) Shewanella amazonensis SB2B 4605851 YP_929477.1 CDS Sama_3605 NC_008700.1 4242055 4242993 R KEGG: rru:Rru_A0785 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4242055..4242993) Shewanella amazonensis SB2B 4605852 YP_929478.1 CDS Sama_3606 NC_008700.1 4243116 4244534 D KEGG: bcz:BCZK0297 aminotransferase, class III; probable 4-aminobutyrate aminotransferase; aminotransferase, class III; 4-aminobutyrate aminotransferase 4243116..4244534 Shewanella amazonensis SB2B 4605853 YP_929479.1 CDS Sama_3607 NC_008700.1 4245135 4246106 R KEGG: son:SO4515 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit C complement(4245135..4246106) Shewanella amazonensis SB2B 4605854 YP_929480.1 CDS Sama_3608 NC_008700.1 4246151 4246720 R KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit; formate dehydrogenase, iron-sulfur subunit complement(4246151..4246720) Shewanella amazonensis SB2B 4605855 YP_929481.1 CDS Sama_3609 NC_008700.1 4246748 4249600 R KEGG: son:SO4513 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(4246748..4249600) Shewanella amazonensis SB2B 4605856 YP_929482.1 CDS Sama_3610 NC_008700.1 4249613 4249807 R KEGG: son:SO4512 hypothetical protein; hypothetical protein complement(4249613..4249807) Shewanella amazonensis SB2B 4605857 YP_929483.1 CDS Sama_3611 NC_008700.1 4250629 4251645 R KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit C complement(4250629..4251645) Shewanella amazonensis SB2B 4605858 YP_929484.1 CDS Sama_3612 NC_008700.1 4251705 4252301 R KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; formate dehydrogenase, iron-sulfur subunit complement(4251705..4252301) Shewanella amazonensis SB2B 4605859 YP_929485.1 CDS Sama_3613 NC_008700.1 4252329 4255178 R KEGG: son:SO4509 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(4252329..4255178) Shewanella amazonensis SB2B 4605860 YP_929486.1 CDS Sama_3614 NC_008700.1 4255209 4255403 R KEGG: son:SO4508 hypothetical protein; hypothetical protein complement(4255209..4255403) Shewanella amazonensis SB2B 4605861 YP_929487.1 CDS Sama_3615 NC_008700.1 4255493 4256158 R KEGG: son:SO4507 TorA specific chaperone, putative; TorA specific chaperone complement(4255493..4256158) Shewanella amazonensis SB2B 4605862 YP_929488.1 CDS Sama_3616 NC_008700.1 4256169 4257911 R KEGG: son:SO4506 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(4256169..4257911) Shewanella amazonensis SB2B 4605863 YP_929489.1 CDS Sama_3617 NC_008700.1 4257967 4258611 R KEGG: son:SO4505 hypothetical protein; hypothetical protein complement(4257967..4258611) Shewanella amazonensis SB2B 4605864 YP_929490.1 CDS Sama_3618 NC_008700.1 4258611 4259069 R KEGG: son:SO4504 hypothetical protein; hypothetical protein complement(4258611..4259069) Shewanella amazonensis SB2B 4605865 YP_929491.1 CDS Sama_3619 NC_008700.1 4259347 4260195 D KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase accessory protein FdhD 4259347..4260195 Shewanella amazonensis SB2B 4605866 YP_929492.1 CDS Sama_3620 NC_008700.1 4260195 4261103 D KEGG: son:SO4502 hypothetical protein; hypothetical protein 4260195..4261103 Shewanella amazonensis SB2B 4605867 YP_929493.1 CDS Sama_3621 NC_008700.1 4261104 4262063 R KEGG: sdn:Sden_0097 protein of unknown function DUF890; putative SAM-dependent methyltransferase complement(4261104..4262063) Shewanella amazonensis SB2B 4605868 YP_929494.1 CDS Sama_3622 NC_008700.1 4262083 4262484 R KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein complement(4262083..4262484) Shewanella amazonensis SB2B 4605869 YP_929495.1 CDS Sama_3623 NC_008700.1 4262595 4263158 D KEGG: son:SO0131 putative chorismate--pyruvate lyase; putative chorismate--pyruvate lyase 4262595..4263158 Shewanella amazonensis SB2B 4605870 YP_929496.1 CDS Sama_3624 NC_008700.1 4263188 4266004 R KEGG: son:SO0130 protease, putative; protease complement(4263188..4266004) Shewanella amazonensis SB2B 4605871 YP_929497.1 CDS Sama_3625 NC_008700.1 4266240 4268393 R KEGG: cpr:CPR_0360 cell wall surface anchor family protein; cell wall surface anchor family protein complement(4266240..4268393) Shewanella amazonensis SB2B 4605872 YP_929498.1 CDS Sama_3626 NC_008700.1 4268462 4269058 R KEGG: sdn:Sden_0092 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein complement(4268462..4269058) Shewanella amazonensis SB2B 4605873 YP_929499.1 CDS Sama_3627 NC_008700.1 4269142 4271271 R KEGG: tcx:Tcr_1222 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); signal transduction protein complement(4269142..4271271) Shewanella amazonensis SB2B 4605874 YP_929500.1 CDS Sama_3628 NC_008700.1 4271577 4273184 D KEGG: sdn:Sden_0091 hypothetical protein; hypothetical protein 4271577..4273184 Shewanella amazonensis SB2B 4605875 YP_929501.1 CDS Sama_3629 NC_008700.1 4273257 4274018 D KEGG: son:SO0126 hypothetical protein; hypothetical protein 4273257..4274018 Shewanella amazonensis SB2B 4605876 YP_929502.1 CDS Sama_3630 NC_008700.1 4274062 4274613 D KEGG: son:SO0123 acyltransferase family protein; acyltransferase family protein 4274062..4274613 Shewanella amazonensis SB2B 4605877 YP_929503.1 CDS Sama_3631 NC_008700.1 4274700 4275323 D KEGG: son:SO0122 transporter, LysE family; amino acid transporter LysE 4274700..4275323 Shewanella amazonensis SB2B 4605878 YP_929504.1 CDS Sama_3632 NC_008700.1 4275313 4276494 R KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; putative small-conductance mechanosensitive channel complement(4275313..4276494) Shewanella amazonensis SB2B 4605879 YP_929505.1 CDS Sama_3633 NC_008700.1 4282602 4284026 R KEGG: son:SO4737 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(4282602..4284026) Shewanella amazonensis SB2B 4606032 YP_929506.1 CDS Sama_3634 NC_008700.1 4284116 4284466 D KEGG: son:SO4738 hypothetical protein; hypothetical protein 4284116..4284466 Shewanella amazonensis SB2B 4605881 YP_929507.1 CDS Sama_3635 NC_008700.1 4284569 4285471 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4284569..4285471 Shewanella amazonensis SB2B 4605882 YP_929508.1 CDS Sama_3636 NC_008700.1 4285619 4285816 D KEGG: son:SO4740 hypothetical protein; hypothetical protein 4285619..4285816 Shewanella amazonensis SB2B 4605883 YP_929509.1 CDS Sama_3637 NC_008700.1 4285863 4287299 R KEGG: sco:SCO6595 secreted protein; hypothetical protein complement(4285863..4287299) Shewanella amazonensis SB2B 4605884 YP_929510.1 CDS Sama_3638 NC_008700.1 4287302 4287526 R hypothetical protein complement(4287302..4287526) Shewanella amazonensis SB2B 4605885 YP_929511.1 CDS Sama_3639 NC_008700.1 4287696 4289525 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4287696..4289525) Shewanella amazonensis SB2B 4605886 YP_929512.1 CDS Sama_3640 NC_008700.1 4289558 4290322 R KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(4289558..4290322) Shewanella amazonensis SB2B 4605887 YP_929513.1 CDS Sama_3641 NC_008700.1 4290466 4292559 R KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent receptor complement(4290466..4292559) Shewanella amazonensis SB2B 4605888 YP_929514.1 CDS Sama_3642 NC_008700.1 4292739 4294103 R KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine diphosphorylase complement(4292739..4294103) Shewanella amazonensis SB2B 4605889 YP_929515.1 CDS atpC NC_008700.1 4294240 4294665 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4294240..4294665) Shewanella amazonensis SB2B 4605890 YP_929516.1 CDS Sama_3644 NC_008700.1 4294701 4296089 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4294701..4296089) Shewanella amazonensis SB2B 4605891 YP_929517.1 CDS Sama_3645 NC_008700.1 4296127 4296987 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4296127..4296987) Shewanella amazonensis SB2B 4605892 YP_929518.1 CDS Sama_3646 NC_008700.1 4297038 4298579 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4297038..4298579) Shewanella amazonensis SB2B 4605893 YP_929519.1 CDS Sama_3647 NC_008700.1 4298594 4299127 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4298594..4299127) Shewanella amazonensis SB2B 4605894 YP_929520.1 CDS Sama_3648 NC_008700.1 4299143 4299613 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4299143..4299613) Shewanella amazonensis SB2B 4605895 YP_929521.1 CDS Sama_3649 NC_008700.1 4299653 4299904 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4299653..4299904) Shewanella amazonensis SB2B 4605896 YP_929522.1 CDS Sama_3650 NC_008700.1 4299972 4300766 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4299972..4300766) Shewanella amazonensis SB2B 4605897 YP_929523.1 CDS Sama_3651 NC_008700.1 4300780 4301163 R KEGG: son:SO4754 ATP synthase protein I; ATP synthase protein I complement(4300780..4301163) Shewanella amazonensis SB2B 4605898 YP_929524.1 CDS Sama_3652 NC_008700.1 4301388 4302266 R KEGG: son:SO4755 ParB family protein; ParB family protein complement(4301388..4302266) Shewanella amazonensis SB2B 4605899 YP_929525.1 CDS Sama_3653 NC_008700.1 4302276 4303064 R KEGG: son:SO4756 ParA family protein; ParA family protein complement(4302276..4303064) Shewanella amazonensis SB2B 4605900 YP_929526.1 CDS gidB NC_008700.1 4303155 4303775 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4303155..4303775) Shewanella amazonensis SB2B 4605901 YP_929527.1 CDS Sama_3655 NC_008700.1 4303877 4305766 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4303877..4305766) Shewanella amazonensis SB2B 4605902 Sama_R0005 tRNA Sama_R0005 NC_008700.1 225961 226037 D tRNA-Ile 225961..226037 Shewanella amazonensis SB2B 4605906 Sama_R0006 tRNA Sama_R0006 NC_008700.1 226157 226232 D tRNA-Ala 226157..226232 Shewanella amazonensis SB2B 4605907 Sama_R0008 tRNA Sama_R0008 NC_008700.1 229488 229563 D tRNA-Val 229488..229563 Shewanella amazonensis SB2B 4605909 Sama_R0010 tRNA Sama_R0010 NC_008700.1 233136 233211 D tRNA-Thr 233136..233211 Shewanella amazonensis SB2B 4602455 Sama_R0011 tRNA Sama_R0011 NC_008700.1 233219 233303 D tRNA-Tyr 233219..233303 Shewanella amazonensis SB2B 4605912 Sama_R0012 tRNA Sama_R0012 NC_008700.1 233339 233412 D tRNA-Gly 233339..233412 Shewanella amazonensis SB2B 4605913 Sama_R0013 tRNA Sama_R0013 NC_008700.1 233426 233501 D tRNA-Thr 233426..233501 Shewanella amazonensis SB2B 4605914 Sama_R0016 tRNA Sama_R0016 NC_008700.1 280666 280741 D tRNA-Val 280666..280741 Shewanella amazonensis SB2B 4605917 Sama_R0018 tRNA Sama_R0018 NC_008700.1 280949 281025 D tRNA-Asp 280949..281025 Shewanella amazonensis SB2B 4605919 Sama_R0023 tRNA Sama_R0023 NC_008700.1 437683 437759 D tRNA-Ile 437683..437759 Shewanella amazonensis SB2B 4605924 Sama_R0024 tRNA Sama_R0024 NC_008700.1 437879 437954 D tRNA-Ala 437879..437954 Shewanella amazonensis SB2B 4605925 Sama_R0026 tRNA Sama_R0026 NC_008700.1 441211 441286 D tRNA-Val 441211..441286 Shewanella amazonensis SB2B 4605927 Sama_R0028 tRNA Sama_R0028 NC_008700.1 441514 441589 D tRNA-Thr 441514..441589 Shewanella amazonensis SB2B 4605929 Sama_R0031 tRNA Sama_R0031 NC_008700.1 680733 680819 D tRNA-Leu 680733..680819 Shewanella amazonensis SB2B 4602808 Sama_R0032 tRNA Sama_R0032 NC_008700.1 1006573 1006649 R tRNA-Met complement(1006573..1006649) Shewanella amazonensis SB2B 4603075 Sama_R0033 tRNA Sama_R0033 NC_008700.1 1149697 1149772 R tRNA-Thr complement(1149697..1149772) Shewanella amazonensis SB2B 4603201 Sama_R0034 tRNA Sama_R0034 NC_008700.1 1149781 1149856 R tRNA-Phe complement(1149781..1149856) Shewanella amazonensis SB2B 4605934 Sama_R0035 tRNA Sama_R0035 NC_008700.1 1158691 1158777 D tRNA-Leu 1158691..1158777 Shewanella amazonensis SB2B 4603211 Sama_R0036 tRNA Sama_R0036 NC_008700.1 1158857 1158933 D tRNA-Met 1158857..1158933 Shewanella amazonensis SB2B 4605936 Sama_R0038 tRNA Sama_R0038 NC_008700.1 1271639 1271730 D tRNA-Ser 1271639..1271730 Shewanella amazonensis SB2B 4603303 Sama_R0039 tRNA Sama_R0039 NC_008700.1 1271754 1271830 D tRNA-Arg 1271754..1271830 Shewanella amazonensis SB2B 4605939 Sama_R0040 tRNA Sama_R0040 NC_008700.1 1271866 1271942 D tRNA-Arg 1271866..1271942 Shewanella amazonensis SB2B 4605940 Sama_R0041 tRNA Sama_R0041 NC_008700.1 1271975 1272051 D tRNA-Arg 1271975..1272051 Shewanella amazonensis SB2B 4605941 Sama_R0042 tRNA Sama_R0042 NC_008700.1 1272091 1272167 D tRNA-Arg 1272091..1272167 Shewanella amazonensis SB2B 4605942 Sama_R0043 tRNA Sama_R0043 NC_008700.1 1272197 1272273 D tRNA-Arg 1272197..1272273 Shewanella amazonensis SB2B 4605943 Sama_R0044 tRNA Sama_R0044 NC_008700.1 1272281 1272372 D tRNA-Ser 1272281..1272372 Shewanella amazonensis SB2B 4605944 Sama_R0045 tRNA Sama_R0045 NC_008700.1 1272419 1272495 D tRNA-Arg 1272419..1272495 Shewanella amazonensis SB2B 4605945 Sama_R0046 tRNA Sama_R0046 NC_008700.1 1504419 1504495 D tRNA-Pro 1504419..1504495 Shewanella amazonensis SB2B 4603475 Sama_R0047 tRNA Sama_R0047 NC_008700.1 1504560 1504636 D tRNA-Arg 1504560..1504636 Shewanella amazonensis SB2B 4605947 Sama_R0048 tRNA Sama_R0048 NC_008700.1 1504649 1504724 D tRNA-His 1504649..1504724 Shewanella amazonensis SB2B 4605948 Sama_R0051 tRNA Sama_R0051 NC_008700.1 1869154 1869230 D tRNA-Ile 1869154..1869230 Shewanella amazonensis SB2B 4605951 Sama_R0052 tRNA Sama_R0052 NC_008700.1 1869351 1869426 D tRNA-Ala 1869351..1869426 Shewanella amazonensis SB2B 4605952 Sama_R0055 tRNA Sama_R0055 NC_008700.1 1894753 1894829 R tRNA-Pro complement(1894753..1894829) Shewanella amazonensis SB2B 4603807 Sama_R0056 tRNA Sama_R0056 NC_008700.1 1954117 1954193 R tRNA-Met complement(1954117..1954193) Shewanella amazonensis SB2B 4603852 Sama_R0057 tRNA Sama_R0057 NC_008700.1 1954236 1954312 R tRNA-Met complement(1954236..1954312) Shewanella amazonensis SB2B 4605957 Sama_R0058 tRNA Sama_R0058 NC_008700.1 1954355 1954431 R tRNA-Met complement(1954355..1954431) Shewanella amazonensis SB2B 4605958 Sama_R0059 tRNA Sama_R0059 NC_008700.1 1963948 1964038 D tRNA-Ser 1963948..1964038 Shewanella amazonensis SB2B 4603859 Sama_R0060 tRNA Sama_R0060 NC_008700.1 1964400 1964490 D tRNA-Ser 1964400..1964490 Shewanella amazonensis SB2B 4605960 Sama_R0061 tRNA Sama_R0061 NC_008700.1 1968083 1968158 D tRNA-Gly 1968083..1968158 Shewanella amazonensis SB2B 4603862 Sama_R0062 tRNA Sama_R0062 NC_008700.1 1968189 1968262 D tRNA-Cys 1968189..1968262 Shewanella amazonensis SB2B 4605962 Sama_R0063 tRNA Sama_R0063 NC_008700.1 1968301 1968387 D tRNA-Leu 1968301..1968387 Shewanella amazonensis SB2B 4605963 Sama_R0064 tRNA Sama_R0064 NC_008700.1 2096231 2096318 D tRNA-Ser 2096231..2096318 Shewanella amazonensis SB2B 4603965 Sama_R0065 tRNA Sama_R0065 NC_008700.1 2138789 2138865 R tRNA-Pro complement(2138789..2138865) Shewanella amazonensis SB2B 4603999 Sama_R0066 tRNA Sama_R0066 NC_008700.1 2156072 2156148 R tRNA-Val complement(2156072..2156148) Shewanella amazonensis SB2B 4604011 Sama_R0067 tRNA Sama_R0067 NC_008700.1 2156188 2156264 R tRNA-Val complement(2156188..2156264) Shewanella amazonensis SB2B 4605967 Sama_R0068 tRNA Sama_R0068 NC_008700.1 2197974 2198047 R tRNA-Cys complement(2197974..2198047) Shewanella amazonensis SB2B 4604056 Sama_R0069 tRNA Sama_R0069 NC_008700.1 2198068 2198143 R tRNA-Gly complement(2198068..2198143) Shewanella amazonensis SB2B 4605969 Sama_R0070 tRNA Sama_R0070 NC_008700.1 2220380 2220464 D tRNA-Tyr 2220380..2220464 Shewanella amazonensis SB2B 4604074 Sama_R0071 tRNA Sama_R0071 NC_008700.1 2220502 2220586 D tRNA-Tyr 2220502..2220586 Shewanella amazonensis SB2B 4605971 Sama_R0072 tRNA Sama_R0072 NC_008700.1 2220614 2220698 D tRNA-Tyr 2220614..2220698 Shewanella amazonensis SB2B 4605972 Sama_R0073 tRNA Sama_R0073 NC_008700.1 2227039 2227114 D tRNA-Asn 2227039..2227114 Shewanella amazonensis SB2B 4604079 Sama_R0074 tRNA Sama_R0074 NC_008700.1 2227163 2227238 D tRNA-Asn 2227163..2227238 Shewanella amazonensis SB2B 4605974 Sama_R0075 tRNA Sama_R0075 NC_008700.1 2227262 2227337 D tRNA-Asn 2227262..2227337 Shewanella amazonensis SB2B 4605975 Sama_R0076 tRNA Sama_R0076 NC_008700.1 2227361 2227436 D tRNA-Asn 2227361..2227436 Shewanella amazonensis SB2B 4605976 Sama_R0077 tRNA Sama_R0077 NC_008700.1 2227460 2227535 D tRNA-Asn 2227460..2227535 Shewanella amazonensis SB2B 4605977 Sama_R0078 tRNA Sama_R0078 NC_008700.1 2294530 2294606 R tRNA-Asp complement(2294530..2294606) Shewanella amazonensis SB2B 4604129 Sama_R0079 tRNA Sama_R0079 NC_008700.1 2527293 2527368 R tRNA-Lys complement(2527293..2527368) Shewanella amazonensis SB2B 4604334 Sama_R0080 tRNA Sama_R0080 NC_008700.1 2527410 2527485 R tRNA-Lys complement(2527410..2527485) Shewanella amazonensis SB2B 4605980 Sama_R0081 tRNA Sama_R0081 NC_008700.1 2527525 2527600 R tRNA-Lys complement(2527525..2527600) Shewanella amazonensis SB2B 4605981 Sama_R0082 tRNA Sama_R0082 NC_008700.1 2527635 2527710 R tRNA-Lys complement(2527635..2527710) Shewanella amazonensis SB2B 4605982 Sama_R0083 tRNA Sama_R0083 NC_008700.1 2527750 2527825 R tRNA-Lys complement(2527750..2527825) Shewanella amazonensis SB2B 4605983 Sama_R0084 tRNA Sama_R0084 NC_008700.1 2527853 2527928 R tRNA-Lys complement(2527853..2527928) Shewanella amazonensis SB2B 4605984 Sama_R0085 tRNA Sama_R0085 NC_008700.1 2527965 2528040 R tRNA-Lys complement(2527965..2528040) Shewanella amazonensis SB2B 4605985 Sama_R0086 tRNA Sama_R0086 NC_008700.1 2528064 2528139 R tRNA-Lys complement(2528064..2528139) Shewanella amazonensis SB2B 4605986 Sama_R0087 tRNA Sama_R0087 NC_008700.1 2666313 2666388 R tRNA-Ala complement(2666313..2666388) Shewanella amazonensis SB2B 4604457 Sama_R0088 tRNA Sama_R0088 NC_008700.1 2666426 2666501 R tRNA-Glu complement(2666426..2666501) Shewanella amazonensis SB2B 4605988 Sama_R0089 tRNA Sama_R0089 NC_008700.1 2666536 2666611 R tRNA-Ala complement(2666536..2666611) Shewanella amazonensis SB2B 4605989 Sama_R0090 tRNA Sama_R0090 NC_008700.1 2666649 2666724 R tRNA-Glu complement(2666649..2666724) Shewanella amazonensis SB2B 4605990 Sama_R0091 tRNA Sama_R0091 NC_008700.1 2666759 2666834 R tRNA-Ala complement(2666759..2666834) Shewanella amazonensis SB2B 4605991 Sama_R0092 tRNA Sama_R0092 NC_008700.1 2666949 2667024 R tRNA-Glu complement(2666949..2667024) Shewanella amazonensis SB2B 4605992 Sama_R0093 tRNA Sama_R0093 NC_008700.1 2667059 2667134 R tRNA-Ala complement(2667059..2667134) Shewanella amazonensis SB2B 4605993 Sama_R0094 tRNA Sama_R0094 NC_008700.1 2667172 2667247 R tRNA-Glu complement(2667172..2667247) Shewanella amazonensis SB2B 4605994 Sama_R0095 tRNA Sama_R0095 NC_008700.1 2667284 2667359 R tRNA-Glu complement(2667284..2667359) Shewanella amazonensis SB2B 4605995 Sama_R0096 tRNA Sama_R0096 NC_008700.1 2667523 2667598 R tRNA-Glu complement(2667523..2667598) Shewanella amazonensis SB2B 4605996 Sama_R0097 tRNA Sama_R0097 NC_008700.1 2667635 2667710 R tRNA-Glu complement(2667635..2667710) Shewanella amazonensis SB2B 4605997 Sama_R0098 tRNA Sama_R0098 NC_008700.1 2667727 2667802 R tRNA-Ala complement(2667727..2667802) Shewanella amazonensis SB2B 4605998 Sama_R0099 tRNA Sama_R0099 NC_008700.1 2790511 2790586 D tRNA-Arg 2790511..2790586 Shewanella amazonensis SB2B 4604577 Sama_R0101 tRNA Sama_R0101 NC_008700.1 3077424 3077498 R tRNA-Gln complement(3077424..3077498) Shewanella amazonensis SB2B 4604818 Sama_R0102 tRNA Sama_R0102 NC_008700.1 3077543 3077619 R tRNA-Met complement(3077543..3077619) Shewanella amazonensis SB2B 4606002 Sama_R0103 tRNA Sama_R0103 NC_008700.1 3077621 3077695 R tRNA-Gln complement(3077621..3077695) Shewanella amazonensis SB2B 4606003 Sama_R0104 tRNA Sama_R0104 NC_008700.1 3077718 3077792 R tRNA-Gln complement(3077718..3077792) Shewanella amazonensis SB2B 4606004 Sama_R0105 tRNA Sama_R0105 NC_008700.1 3077832 3077916 R tRNA-Leu complement(3077832..3077916) Shewanella amazonensis SB2B 4606005 Sama_R0106 tRNA Sama_R0106 NC_008700.1 3077946 3078022 R tRNA-Met complement(3077946..3078022) Shewanella amazonensis SB2B 4606006 Sama_R0107 tRNA Sama_R0107 NC_008700.1 3104987 3105063 R tRNA-Trp complement(3104987..3105063) Shewanella amazonensis SB2B 4604846 Sama_R0108 tRNA Sama_R0108 NC_008700.1 3107019 3107095 R tRNA-Asp complement(3107019..3107095) Shewanella amazonensis SB2B 4604847 Sama_R0110 tRNA Sama_R0110 NC_008700.1 3107352 3107427 R tRNA-Val complement(3107352..3107427) Shewanella amazonensis SB2B 4606010 Sama_R0113 tRNA Sama_R0113 NC_008700.1 3120564 3120639 D tRNA-Phe 3120564..3120639 Shewanella amazonensis SB2B 4604854 Sama_R0114 tRNA Sama_R0114 NC_008700.1 3120692 3120778 D tRNA-Leu 3120692..3120778 Shewanella amazonensis SB2B 4606014 Sama_R0115 tRNA Sama_R0115 NC_008700.1 3120816 3120902 D tRNA-Leu 3120816..3120902 Shewanella amazonensis SB2B 4606015 Sama_R0116 tRNA Sama_R0116 NC_008700.1 3120933 3121019 D tRNA-Leu 3120933..3121019 Shewanella amazonensis SB2B 4606016 Sama_R0118 tRNA Sama_R0118 NC_008700.1 3607448 3607523 R tRNA-Gly complement(3607448..3607523) Shewanella amazonensis SB2B 4605279 Sama_R0119 tRNA Sama_R0119 NC_008700.1 3607557 3607632 R tRNA-Gly complement(3607557..3607632) Shewanella amazonensis SB2B 4606018 Sama_R0120 tRNA Sama_R0120 NC_008700.1 3607666 3607741 R tRNA-Gly complement(3607666..3607741) Shewanella amazonensis SB2B 4606019 Sama_R0121 tRNA Sama_R0121 NC_008700.1 3607775 3607850 R tRNA-Gly complement(3607775..3607850) Shewanella amazonensis SB2B 4606020 Sama_R0122 tRNA Sama_R0122 NC_008700.1 3607884 3607959 R tRNA-Gly complement(3607884..3607959) Shewanella amazonensis SB2B 4606021 Sama_R0123 tRNA Sama_R0123 NC_008700.1 3874396 3874472 R tRNA-Pro complement(3874396..3874472) Shewanella amazonensis SB2B 4605512 Sama_R0124 tRNA Sama_R0124 NC_008700.1 3874550 3874626 R tRNA-Pro complement(3874550..3874626) Shewanella amazonensis SB2B 4606023 Sama_R0125 tRNA Sama_R0125 NC_008700.1 3874650 3874725 R tRNA-His complement(3874650..3874725) Shewanella amazonensis SB2B 4606024 Sama_R0126 tRNA Sama_R0126 NC_008700.1 3874761 3874837 R tRNA-Arg complement(3874761..3874837) Shewanella amazonensis SB2B 4606025 Sama_R0128 tRNA Sama_R0128 NC_008700.1 4109629 4109702 R tRNA-Gly complement(4109629..4109702) Shewanella amazonensis SB2B 4605726 Sama_R0129 tRNA Sama_R0129 NC_008700.1 4277026 4277102 R tRNA-Asp complement(4277026..4277102) Shewanella amazonensis SB2B 4605880 Sama_R0001 rRNA Sama_R0001 NC_008700.1 56157 57693 D 16S ribosomal RNA 56157..57693 Shewanella amazonensis SB2B 4602312 Sama_R0002 rRNA Sama_R0002 NC_008700.1 57960 60873 D 23S ribosomal RNA 57960..60873 Shewanella amazonensis SB2B 4605903 Sama_R0003 rRNA Sama_R0003 NC_008700.1 61045 61160 D 5S ribosomal RNA 61045..61160 Shewanella amazonensis SB2B 4605904 Sama_R0004 rRNA Sama_R0004 NC_008700.1 224354 225890 D 16S ribosomal RNA 224354..225890 Shewanella amazonensis SB2B 4602452 Sama_R0007 rRNA Sama_R0007 NC_008700.1 226509 229422 D 23S ribosomal RNA 226509..229422 Shewanella amazonensis SB2B 4605908 Sama_R0009 rRNA Sama_R0009 NC_008700.1 229630 229745 D 5S ribosomal RNA 229630..229745 Shewanella amazonensis SB2B 4605910 Sama_R0014 rRNA Sama_R0014 NC_008700.1 275883 277419 D 16S ribosomal RNA 275883..277419 Shewanella amazonensis SB2B 4602508 Sama_R0015 rRNA Sama_R0015 NC_008700.1 277686 280599 D 23S ribosomal RNA 277686..280599 Shewanella amazonensis SB2B 4605916 Sama_R0017 rRNA Sama_R0017 NC_008700.1 280810 280925 D 5S ribosomal RNA 280810..280925 Shewanella amazonensis SB2B 4605918 Sama_R0019 rRNA Sama_R0019 NC_008700.1 282826 284362 D 16S ribosomal RNA 282826..284362 Shewanella amazonensis SB2B 4605920 Sama_R0020 rRNA Sama_R0020 NC_008700.1 284629 287542 D 23S ribosomal RNA 284629..287542 Shewanella amazonensis SB2B 4605921 Sama_R0021 rRNA Sama_R0021 NC_008700.1 287714 287829 D 5S ribosomal RNA 287714..287829 Shewanella amazonensis SB2B 4605922 Sama_R0022 rRNA Sama_R0022 NC_008700.1 436076 437612 D 16S ribosomal RNA 436076..437612 Shewanella amazonensis SB2B 4602619 Sama_R0025 rRNA Sama_R0025 NC_008700.1 438231 441144 D 23S ribosomal RNA 438231..441144 Shewanella amazonensis SB2B 4605926 Sama_R0027 rRNA Sama_R0027 NC_008700.1 441353 441468 D 5S ribosomal RNA 441353..441468 Shewanella amazonensis SB2B 4605928 Sama_R0029 rRNA Sama_R0029 NC_008700.1 441632 441746 D 5S ribosomal RNA 441632..441746 Shewanella amazonensis SB2B 4605930 Sama_R0050 rRNA Sama_R0050 NC_008700.1 1867547 1869083 D 16S ribosomal RNA 1867547..1869083 Shewanella amazonensis SB2B 4603788 Sama_R0053 rRNA Sama_R0053 NC_008700.1 1869703 1872616 D 23S ribosomal RNA 1869703..1872616 Shewanella amazonensis SB2B 4605953 Sama_R0054 rRNA Sama_R0054 NC_008700.1 1872787 1872902 D 5S ribosomal RNA 1872787..1872902 Shewanella amazonensis SB2B 4605954 Sama_R0109 rRNA Sama_R0109 NC_008700.1 3107119 3107234 R 5S ribosomal RNA complement(3107119..3107234) Shewanella amazonensis SB2B 4606009 Sama_R0111 rRNA Sama_R0111 NC_008700.1 3107493 3110406 R 23S ribosomal RNA complement(3107493..3110406) Shewanella amazonensis SB2B 4606011 Sama_R0112 rRNA Sama_R0112 NC_008700.1 3110673 3112209 R 16S ribosomal RNA complement(3110673..3112209) Shewanella amazonensis SB2B 4606012 Sama_R0130 rRNA Sama_R0130 NC_008700.1 4277126 4277241 R 5S ribosomal RNA complement(4277126..4277241) Shewanella amazonensis SB2B 4606029 Sama_R0131 rRNA Sama_R0131 NC_008700.1 4277413 4280326 R 23S ribosomal RNA complement(4277413..4280326) Shewanella amazonensis SB2B 4606030 Sama_R0132 rRNA Sama_R0132 NC_008700.1 4280593 4282129 R 16S ribosomal RNA complement(4280593..4282129) Shewanella amazonensis SB2B 4606031