-- dump date 20140620_063026 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_925883.1 119773143 4606043 complement(70..510) 1 NC_008700.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 510 4606043 Sama_0001 Shewanella amazonensis SB2B flavodoxin YP_925883.1 70 R 326297 CDS YP_925884.1 119773144 4602259 657..1571 1 NC_008700.1 KEGG: vpa:VP2298 hypothetical protein; hypothetical protein 1571 4602259 Sama_0002 Shewanella amazonensis SB2B hypothetical protein YP_925884.1 657 D 326297 CDS YP_925885.1 119773145 4602260 complement(1522..2367) 1 NC_008700.1 KEGG: sdn:Sden_3766 carboxylesterase; carboxylesterase 2367 4602260 Sama_0003 Shewanella amazonensis SB2B carboxylesterase YP_925885.1 1522 R 326297 CDS YP_925886.1 119773146 4602261 complement(2377..3510) 1 NC_008700.1 KEGG: sdn:Sden_3767 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3510 4602261 Sama_0004 Shewanella amazonensis SB2B alcohol dehydrogenase YP_925886.1 2377 R 326297 CDS YP_925887.1 119773147 4602262 3686..4558 1 NC_008700.1 KEGG: sdn:Sden_3768 LysR, substrate-binding; LysR, substrate-binding 4558 4602262 Sama_0005 Shewanella amazonensis SB2B LysR, substrate-binding YP_925887.1 3686 D 326297 CDS YP_925888.1 119773148 4602263 4686..5186 1 NC_008700.1 KEGG: son:SO0302 hypothetical protein; hypothetical protein 5186 4602263 Sama_0006 Shewanella amazonensis SB2B hypothetical protein YP_925888.1 4686 D 326297 CDS YP_925889.1 119773149 4602264 5295..6401 1 NC_008700.1 KEGG: mxa:MXAN_3389 oxidoreductase, FAD/FMN-binding; FAD/FMN-binding oxidoreductase 6401 4602264 Sama_0007 Shewanella amazonensis SB2B FAD/FMN-binding oxidoreductase YP_925889.1 5295 D 326297 CDS YP_925890.1 119773150 4602265 complement(6502..7863) 1 NC_008700.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 7863 trmE 4602265 trmE Shewanella amazonensis SB2B tRNA modification GTPase TrmE YP_925890.1 6502 R 326297 CDS YP_925891.1 119773151 4602266 complement(7951..9576) 1 NC_008700.1 KEGG: son:SO0004 inner membrane protein, 60 kDa; inner membrane protein, 60 kDa 9576 4602266 Sama_0009 Shewanella amazonensis SB2B inner membrane protein, 60 kDa YP_925891.1 7951 R 326297 CDS YP_925892.1 119773152 4602267 complement(9581..9835) 1 NC_008700.1 KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein 9835 4602267 Sama_0010 Shewanella amazonensis SB2B hypothetical protein YP_925892.1 9581 R 326297 CDS YP_925893.1 119773153 4602268 complement(9802..10158) 1 NC_008700.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 10158 rnpA 4602268 rnpA Shewanella amazonensis SB2B ribonuclease P YP_925893.1 9802 R 326297 CDS YP_925894.1 119773154 4602269 complement(10175..10312) 1 NC_008700.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 10312 rpmH 4602269 rpmH Shewanella amazonensis SB2B 50S ribosomal protein L34 YP_925894.1 10175 R 326297 CDS YP_925895.1 119773155 4602270 10775..12148 1 NC_008700.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 12148 dnaA 4602270 dnaA Shewanella amazonensis SB2B chromosomal replication initiation protein YP_925895.1 10775 D 326297 CDS YP_925896.1 119773156 4602271 12168..13268 1 NC_008700.1 KEGG: son:SO0009 DNA polymerase III, beta subunit; DNA-directed DNA polymerase 13268 4602271 Sama_0014 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_925896.1 12168 D 326297 CDS YP_925897.1 119773157 4602272 13296..14378 1 NC_008700.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 14378 recF 4602272 recF Shewanella amazonensis SB2B recombination protein F YP_925897.1 13296 D 326297 CDS YP_925898.1 119773158 4602273 14471..16888 1 NC_008700.1 KEGG: son:SO0011 DNA gyrase subunit B; DNA topoisomerase 16888 4602273 Sama_0016 Shewanella amazonensis SB2B DNA topoisomerase YP_925898.1 14471 D 326297 CDS YP_925899.1 119773159 4602274 complement(16992..17393) 1 NC_008700.1 KEGG: son:SO0464 MutT/nudix family protein; MutT/nudix family protein 17393 4602274 Sama_0017 Shewanella amazonensis SB2B MutT/nudix family protein YP_925899.1 16992 R 326297 CDS YP_925900.1 119773160 4602275 complement(17393..18046) 1 NC_008700.1 KEGG: pha:PSHAa1441 pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (pyroglutamyl-peptidase I) (PGP-I) (pyrase); pyroglutamyl-peptidase I 18046 4602275 Sama_0018 Shewanella amazonensis SB2B pyroglutamyl-peptidase I YP_925900.1 17393 R 326297 CDS YP_925901.1 119773161 4602276 complement(18058..19041) 1 NC_008700.1 KEGG: rso:RSc2167 probable transmembrane protein; putative transmembrane protein 19041 4602276 Sama_0019 Shewanella amazonensis SB2B putative transmembrane protein YP_925901.1 18058 R 326297 CDS YP_925902.1 119773162 4602277 complement(19038..19778) 1 NC_008700.1 KEGG: bur:Bcep18194_B2013 protein of unknown function DUF969; hypothetical protein 19778 4602277 Sama_0020 Shewanella amazonensis SB2B hypothetical protein YP_925902.1 19038 R 326297 CDS YP_925903.1 119773163 4602278 complement(19768..20493) 1 NC_008700.1 KEGG: hit:NTHI2036 hypothetical protein; hypothetical protein 20493 4602278 Sama_0021 Shewanella amazonensis SB2B hypothetical protein YP_925903.1 19768 R 326297 CDS YP_925904.1 119773164 4602279 complement(20486..21418) 1 NC_008700.1 KEGG: sbo:SBO_0571 putative carboxylase; Urea carboxylase 21418 4602279 Sama_0022 Shewanella amazonensis SB2B Urea carboxylase YP_925904.1 20486 R 326297 CDS YP_925905.1 119773165 4602280 complement(21420..22082) 1 NC_008700.1 KEGG: bxe:Bxe_A0195 conserved hypothetical protein 370; hypothetical protein 22082 4602280 Sama_0023 Shewanella amazonensis SB2B hypothetical protein YP_925905.1 21420 R 326297 CDS YP_925906.1 119773166 4602281 22337..23392 1 NC_008700.1 KEGG: son:SO0013 hypothetical protein; putative signal transduction protein 23392 4602281 Sama_0024 Shewanella amazonensis SB2B putative signal transduction protein YP_925906.1 22337 D 326297 CDS YP_925907.1 119773167 4602282 complement(23457..25526) 1 NC_008700.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 25526 glyS 4602282 glyS Shewanella amazonensis SB2B glycyl-tRNA synthetase subunit beta YP_925907.1 23457 R 326297 CDS YP_925908.1 119773168 4602283 complement(25552..26457) 1 NC_008700.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 26457 glyQ 4602283 glyQ Shewanella amazonensis SB2B glycyl-tRNA synthetase subunit alpha YP_925908.1 25552 R 326297 CDS YP_925909.1 119773169 4602284 26565..27134 1 NC_008700.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I 27134 4602284 Sama_0027 Shewanella amazonensis SB2B DNA-3-methyladenine glycosylase I YP_925909.1 26565 D 326297 CDS YP_925910.1 119773170 4602285 complement(27239..30427) 1 NC_008700.1 KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase 30427 4602285 Sama_0028 Shewanella amazonensis SB2B amidohydrolase YP_925910.1 27239 R 326297 CDS YP_925911.1 119773171 4602286 complement(30571..30870) 1 NC_008700.1 KEGG: sdn:Sden_0013 SirA-like protein; redox protein regulator of disulfide bond formation 30870 4602286 Sama_0029 Shewanella amazonensis SB2B redox protein regulator of disulfide bond formation YP_925911.1 30571 R 326297 CDS YP_925912.1 119773172 4602287 31147..33129 1 NC_008700.1 KEGG: son:SO4466 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 33129 4602287 Sama_0030 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_925912.1 31147 D 326297 CDS YP_925913.1 119773173 4602288 complement(33194..34357) 1 NC_008700.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 34357 fadA 4602288 fadA Shewanella amazonensis SB2B 3-ketoacyl-CoA thiolase YP_925913.1 33194 R 326297 CDS YP_925914.1 119773174 4602289 complement(34377..36527) 1 NC_008700.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 36527 fadB 4602289 fadB Shewanella amazonensis SB2B multifunctional fatty acid oxidation complex subunit alpha YP_925914.1 34377 R 326297 CDS YP_925915.1 119773175 4602290 36808..38127 1 NC_008700.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 38127 4602290 Sama_0033 Shewanella amazonensis SB2B proline dipeptidase YP_925915.1 36808 D 326297 CDS YP_925916.1 119773176 4602291 38130..38750 1 NC_008700.1 KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 38750 4602291 Sama_0034 Shewanella amazonensis SB2B hypothetical protein YP_925916.1 38130 D 326297 CDS YP_925917.1 119773177 4602292 38875..40332 1 NC_008700.1 KEGG: shm:Shewmr7_0019 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 40332 4602292 Sama_0035 Shewanella amazonensis SB2B TrkH family potassium uptake protein YP_925917.1 38875 D 326297 CDS YP_925918.1 119773178 4602293 40332..40865 1 NC_008700.1 KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 40865 4602293 Sama_0036 Shewanella amazonensis SB2B protoporphyrinogen oxidase YP_925918.1 40332 D 326297 CDS YP_925919.1 119773179 4602294 complement(40878..41186) 1 NC_008700.1 KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 41186 4602294 Sama_0037 Shewanella amazonensis SB2B ArsR family transcriptional regulator YP_925919.1 40878 R 326297 CDS YP_925920.1 119773180 4602295 41376..41927 1 NC_008700.1 KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 41927 4602295 Sama_0038 Shewanella amazonensis SB2B protoporphyrinogen oxidase YP_925920.1 41376 D 326297 CDS YP_925921.1 119773181 4602296 complement(41933..43375) 1 NC_008700.1 KEGG: son:SO0028 potassium uptake protein TrkH; potassium uptake protein TrkH 43375 4602296 Sama_0039 Shewanella amazonensis SB2B potassium uptake protein TrkH YP_925921.1 41933 R 326297 CDS YP_925922.1 119773182 4602297 complement(43378..44787) 1 NC_008700.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 44787 trkA 4602297 trkA Shewanella amazonensis SB2B potassium transporter peripheral membrane protein YP_925922.1 43378 R 326297 CDS YP_925923.1 119773183 4602298 complement(44805..46088) 1 NC_008700.1 KEGG: sdn:Sden_0022 sun protein; sun protein 46088 4602298 Sama_0041 Shewanella amazonensis SB2B sun protein YP_925923.1 44805 R 326297 CDS YP_925924.1 119773184 4602299 complement(46088..47050) 1 NC_008700.1 KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 47050 4602299 Sama_0042 Shewanella amazonensis SB2B methionyl-tRNA formyltransferase YP_925924.1 46088 R 326297 CDS YP_925925.1 119773185 4602300 complement(47066..47569) 1 NC_008700.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 47569 def 4602300 def Shewanella amazonensis SB2B peptide deformylase YP_925925.1 47066 R 326297 CDS YP_925926.1 119773186 4602301 47757..48797 1 NC_008700.1 KEGG: son:SO0033 LysM domain protein; LysM domain-containing protein 48797 4602301 Sama_0044 Shewanella amazonensis SB2B LysM domain-containing protein YP_925926.1 47757 D 326297 CDS YP_925927.1 119773187 4602302 48882..49898 1 NC_008700.1 KEGG: son:SO0034 DNA processing protein DprA, putative; DNA processing protein DprA 49898 4602302 Sama_0045 Shewanella amazonensis SB2B DNA processing protein DprA YP_925927.1 48882 D 326297 CDS YP_925928.1 119773188 4602303 49901..50380 1 NC_008700.1 KEGG: shm:Shewmr7_0030 protein of unknown function DUF494; hypothetical protein 50380 4602303 Sama_0046 Shewanella amazonensis SB2B hypothetical protein YP_925928.1 49901 D 326297 CDS YP_925929.1 119773189 4602304 complement(50462..50728) 1 NC_008700.1 KEGG: cps:CPS_2237 microbial collagenase; hypothetical protein 50728 4602304 Sama_0047 Shewanella amazonensis SB2B hypothetical protein YP_925929.1 50462 R 326297 CDS YP_925930.1 119773190 4602305 51290..51853 1 NC_008700.1 KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; topoisomerase DNA-binding C4 zinc finger domain-containing protein 51853 4602305 Sama_0048 Shewanella amazonensis SB2B topoisomerase DNA-binding C4 zinc finger domain-containing protein YP_925930.1 51290 D 326297 CDS YP_925931.1 119773191 4602306 51951..52523 1 NC_008700.1 KEGG: sdn:Sden_0029 SUA5/YciO/YrdC-like protein; SUA5/YciO/YrdC-like protein 52523 4602306 Sama_0049 Shewanella amazonensis SB2B SUA5/YciO/YrdC-like protein YP_925931.1 51951 D 326297 CDS YP_925932.1 119773192 4602307 52537..53451 1 NC_008700.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 53451 4602307 Sama_0050 Shewanella amazonensis SB2B coproporphyrinogen III oxidase YP_925932.1 52537 D 326297 CDS YP_925933.1 119773193 4602308 complement(53477..53908) 1 NC_008700.1 KEGG: sdn:Sden_0031 globin; globin 53908 4602308 Sama_0051 Shewanella amazonensis SB2B globin YP_925933.1 53477 R 326297 CDS YP_925934.1 119773194 4602309 54060..54896 1 NC_008700.1 KEGG: sdn:Sden_0034 shikimate 5-dehydrogenase; shikimate dehydrogenase 54896 4602309 Sama_0052 Shewanella amazonensis SB2B shikimate dehydrogenase YP_925934.1 54060 D 326297 CDS YP_925935.1 119773195 4602310 54899..55156 1 NC_008700.1 KEGG: son:SO0041 hypothetical protein; hypothetical protein 55156 4602310 Sama_0053 Shewanella amazonensis SB2B hypothetical protein YP_925935.1 54899 D 326297 CDS YP_925936.1 119773196 4602311 complement(55153..55701) 1 NC_008700.1 KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase 55701 4602311 Sama_0054 Shewanella amazonensis SB2B carbonic anhydrase YP_925936.1 55153 R 326297 CDS YP_925937.1 119773197 4605905 61309..61560 1 NC_008700.1 KEGG: son:SO0044 hypothetical protein; hypothetical protein 61560 4605905 Sama_0055 Shewanella amazonensis SB2B hypothetical protein YP_925937.1 61309 D 326297 CDS YP_925938.1 119773198 4602313 61576..62031 1 NC_008700.1 KEGG: son:SO0045 Rrf2 family protein; Rrf2 family protein 62031 4602313 Sama_0056 Shewanella amazonensis SB2B Rrf2 family protein YP_925938.1 61576 D 326297 CDS YP_925939.1 119773199 4602314 complement(62006..62758) 1 NC_008700.1 KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ; hypothetical protein 62758 4602314 Sama_0057 Shewanella amazonensis SB2B hypothetical protein YP_925939.1 62006 R 326297 CDS YP_925940.1 119773200 4602315 complement(62780..63976) 1 NC_008700.1 KEGG: son:SO0047 carboxyl-terminal protease, putative; C-terminal processing peptidase 63976 4602315 Sama_0058 Shewanella amazonensis SB2B C-terminal processing peptidase YP_925940.1 62780 R 326297 CDS YP_925941.1 119773201 4602316 complement(64007..65143) 1 NC_008700.1 KEGG: son:SO0048 peptidase, M23/M37 family; M24/M37 family peptidase 65143 4602316 Sama_0059 Shewanella amazonensis SB2B M24/M37 family peptidase YP_925941.1 64007 R 326297 CDS YP_925942.1 119773202 4602317 complement(65149..66690) 1 NC_008700.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 66690 4602317 Sama_0060 Shewanella amazonensis SB2B phosphoglyceromutase YP_925942.1 65149 R 326297 CDS YP_925943.1 119773203 4602318 66964..67356 1 NC_008700.1 KEGG: sdn:Sden_3697 rhodanese-like protein; rhodanese-like protein 67356 4602318 Sama_0061 Shewanella amazonensis SB2B rhodanese-like protein YP_925943.1 66964 D 326297 CDS YP_925944.1 119773204 4602319 67576..68055 1 NC_008700.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 68055 4602319 Sama_0062 Shewanella amazonensis SB2B preprotein translocase subunit SecB YP_925944.1 67576 D 326297 CDS YP_925945.1 119773205 4602320 68062..69081 1 NC_008700.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 69081 gpsA 4602320 gpsA Shewanella amazonensis SB2B NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_925945.1 68062 D 326297 CDS YP_925946.1 119773206 4602321 69152..70345 1 NC_008700.1 KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein 70345 4602321 Sama_0064 Shewanella amazonensis SB2B hypothetical protein YP_925946.1 69152 D 326297 CDS YP_925947.1 119773207 4602322 70912..71829 1 NC_008700.1 KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 71829 4602322 Sama_0065 Shewanella amazonensis SB2B response regulator receiver protein YP_925947.1 70912 D 326297 CDS YP_925948.1 119773208 4602323 71844..72794 1 NC_008700.1 KEGG: sde:Sde_0403 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein 72794 4602323 Sama_0066 Shewanella amazonensis SB2B ABC-type nitrate/sulfonate/bicarbonate transport system protein YP_925948.1 71844 D 326297 CDS YP_925949.1 119773209 4602324 72794..75859 1 NC_008700.1 KEGG: hch:HCH_00809 signal transduction histidine kinase; signal transduction histidine kinase-like protein 75859 4602324 Sama_0067 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_925949.1 72794 D 326297 CDS YP_925950.1 119773210 4602325 75976..76506 1 NC_008700.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 76506 mogA 4602325 mogA Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein MogA YP_925950.1 75976 D 326297 CDS YP_925951.1 119773211 4602326 76553..76999 1 NC_008700.1 KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 family lipoprotein 76999 4602326 Sama_0069 Shewanella amazonensis SB2B NLP/P60 family lipoprotein YP_925951.1 76553 D 326297 CDS YP_925952.1 119773212 4602327 complement(77043..77630) 1 NC_008700.1 KEGG: mlo:mlr8324 hypothetical protein; hypothetical protein 77630 4602327 Sama_0070 Shewanella amazonensis SB2B hypothetical protein YP_925952.1 77043 R 326297 CDS YP_925953.1 119773213 4602328 complement(77654..77893) 1 NC_008700.1 KEGG: son:SO0079 hypothetical protein; hypothetical protein 77893 4602328 Sama_0071 Shewanella amazonensis SB2B hypothetical protein YP_925953.1 77654 R 326297 CDS YP_925954.1 119773214 4602329 complement(77895..78806) 1 NC_008700.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 78806 pbpG 4602329 pbpG Shewanella amazonensis SB2B D-alanyl-D-alanine endopeptidase YP_925954.1 77895 R 326297 CDS YP_925955.1 119773215 4602330 complement(78895..79329) 1 NC_008700.1 KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 79329 4602330 Sama_0073 Shewanella amazonensis SB2B 4-hydroxybenzoyl-CoA thioesterase YP_925955.1 78895 R 326297 CDS YP_925956.1 119773216 4602331 complement(79435..80115) 1 NC_008700.1 KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD-superfamily hydrolase 80115 4602331 Sama_0074 Shewanella amazonensis SB2B HAD-superfamily hydrolase YP_925956.1 79435 R 326297 CDS YP_925957.1 119773217 4602332 80333..81535 1 NC_008700.1 KEGG: sdn:Sden_0079 hypothetical protein; hypothetical protein 81535 4602332 Sama_0075 Shewanella amazonensis SB2B hypothetical protein YP_925957.1 80333 D 326297 CDS YP_925958.1 119773218 4602333 81833..82699 1 NC_008700.1 KEGG: sdn:Sden_3013 transcription activator, effector binding; transcription activator, effector binding 82699 4602333 Sama_0076 Shewanella amazonensis SB2B transcription activator, effector binding YP_925958.1 81833 D 326297 CDS YP_925959.1 119773219 4602334 complement(82839..84014) 1 NC_008700.1 KEGG: ppr:PBPRA1786 hypothetical transcriptional regulator; MerR family transcriptional regulator 84014 4602334 Sama_0077 Shewanella amazonensis SB2B MerR family transcriptional regulator YP_925959.1 82839 R 326297 CDS YP_925960.1 119773220 4602335 84659..86656 1 NC_008700.1 KEGG: ccr:CC3723 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 86656 4602335 Sama_0078 Shewanella amazonensis SB2B prolyl oligopeptidase family protein YP_925960.1 84659 D 326297 CDS YP_925961.1 119773221 4602336 complement(86728..87702) 1 NC_008700.1 KEGG: bur:Bcep18194_A4870 putative esterase; putative esterase 87702 4602336 Sama_0079 Shewanella amazonensis SB2B putative esterase YP_925961.1 86728 R 326297 CDS YP_925962.1 119773222 4602337 complement(87909..89147) 1 NC_008700.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 89147 4602337 Sama_0080 Shewanella amazonensis SB2B imidazolonepropionase YP_925962.1 87909 R 326297 CDS YP_925963.1 119773223 4602338 89362..90066 1 NC_008700.1 KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 90066 4602338 Sama_0081 Shewanella amazonensis SB2B histidine utilization repressor YP_925963.1 89362 D 326297 CDS YP_925964.1 119773224 4602339 90316..92769 1 NC_008700.1 KEGG: sdn:Sden_3670 GGDEF domain protein; diguanylate cyclase 92769 4602339 Sama_0082 Shewanella amazonensis SB2B diguanylate cyclase YP_925964.1 90316 D 326297 CDS YP_925965.1 119773225 4602340 complement(92823..93776) 1 NC_008700.1 KEGG: she:Shewmr4_3914 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 93776 4602340 Sama_0083 Shewanella amazonensis SB2B alpha/beta hydrolase fold domain-containing protein YP_925965.1 92823 R 326297 CDS YP_925966.1 119773226 4602341 complement(93820..95679) 1 NC_008700.1 KEGG: son:SO4732 hypothetical protein; hypothetical protein 95679 4602341 Sama_0084 Shewanella amazonensis SB2B hypothetical protein YP_925966.1 93820 R 326297 CDS YP_925967.1 119773227 4602342 95910..96908 1 NC_008700.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 96908 4602342 Sama_0085 Shewanella amazonensis SB2B adenosine deaminase YP_925967.1 95910 D 326297 CDS YP_925968.1 119773228 4602343 complement(96995..98335) 1 NC_008700.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 98335 4602343 Sama_0086 Shewanella amazonensis SB2B coproporphyrinogen III oxidase YP_925968.1 96995 R 326297 CDS YP_925969.1 119773229 4602344 98474..99745 1 NC_008700.1 KEGG: pat:Patl_4277 amidohydrolase; amidohydrolase 99745 4602344 Sama_0087 Shewanella amazonensis SB2B amidohydrolase YP_925969.1 98474 D 326297 CDS YP_925970.1 119773230 4602345 complement(99802..100269) 1 NC_008700.1 KEGG: son:SO4729 hypothetical protein; hypothetical protein 100269 4602345 Sama_0088 Shewanella amazonensis SB2B hypothetical protein YP_925970.1 99802 R 326297 CDS YP_925971.1 119773231 4602346 complement(100286..100822) 1 NC_008700.1 KEGG: son:SO4728 hypothetical protein; hypothetical protein 100822 4602346 Sama_0089 Shewanella amazonensis SB2B hypothetical protein YP_925971.1 100286 R 326297 CDS YP_925972.1 119773232 4602347 complement(100859..101539) 1 NC_008700.1 KEGG: son:SO4727 hypothetical protein; hypothetical protein 101539 4602347 Sama_0090 Shewanella amazonensis SB2B hypothetical protein YP_925972.1 100859 R 326297 CDS YP_925973.1 119773233 4602348 complement(102313..102933) 1 NC_008700.1 KEGG: sdn:Sden_3622 cytochrome c, class I; cytochrome c, class I 102933 4602348 Sama_0091 Shewanella amazonensis SB2B cytochrome c, class I YP_925973.1 102313 R 326297 CDS YP_925974.1 119773234 4602349 103103..103756 1 NC_008700.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 103756 engB 4602349 engB Shewanella amazonensis SB2B ribosome biogenesis GTP-binding protein YsxC YP_925974.1 103103 D 326297 CDS YP_925975.1 119773235 4602350 complement(104678..107449) 1 NC_008700.1 KEGG: son:SO4669 DNA polymerase I; DNA-directed DNA polymerase 107449 4602350 Sama_0093 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_925975.1 104678 R 326297 CDS YP_925976.1 119773236 4602351 107836..108489 1 NC_008700.1 KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 108489 4602351 Sama_0094 Shewanella amazonensis SB2B isoprenoid biosynthesis protein with amidotransferase-like domain YP_925976.1 107836 D 326297 CDS YP_925977.1 119773237 4602352 complement(108523..109353) 1 NC_008700.1 KEGG: son:SO4671 glpG protein; glpG protein 109353 4602352 Sama_0095 Shewanella amazonensis SB2B glpG protein YP_925977.1 108523 R 326297 CDS YP_925978.1 119773238 4602353 complement(109353..109664) 1 NC_008700.1 KEGG: son:SO4672 glpE protein; glpE protein 109664 4602353 Sama_0096 Shewanella amazonensis SB2B glpE protein YP_925978.1 109353 R 326297 CDS YP_925979.1 119773239 4602354 complement(109791..110816) 1 NC_008700.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 110816 tdh 4602354 tdh Shewanella amazonensis SB2B L-threonine 3-dehydrogenase YP_925979.1 109791 R 326297 CDS YP_925980.1 119773240 4602355 complement(110838..112031) 1 NC_008700.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 112031 4602355 Sama_0098 Shewanella amazonensis SB2B 2-amino-3-ketobutyrate coenzyme A ligase YP_925980.1 110838 R 326297 CDS YP_925981.1 119773241 4602356 complement(112290..112925) 1 NC_008700.1 KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator 112925 4602356 Sama_0099 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_925981.1 112290 R 326297 CDS YP_925982.1 119773242 4602357 113051..114313 1 NC_008700.1 KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid (KDO) transferase 114313 4602357 Sama_0100 Shewanella amazonensis SB2B 3-deoxy-D-manno-octulosonic-acid (KDO) transferase YP_925982.1 113051 D 326297 CDS YP_925983.1 119773243 4602358 complement(114298..115050) 1 NC_008700.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 115050 4602358 Sama_0101 Shewanella amazonensis SB2B 3-deoxy-D-manno-octulosonic-acid kinase YP_925983.1 114298 R 326297 CDS YP_925984.1 119773244 4602359 115093..116145 1 NC_008700.1 KEGG: shm:Shewmr7_3988 glycosyl transferase, family 9; glycosyl transferase family protein 116145 4602359 Sama_0102 Shewanella amazonensis SB2B glycosyl transferase family protein YP_925984.1 115093 D 326297 CDS YP_925985.1 119773245 4602360 116150..117250 1 NC_008700.1 KEGG: pha:PSHAa2321 hypothetical protein; hypothetical protein 117250 4602360 Sama_0103 Shewanella amazonensis SB2B hypothetical protein YP_925985.1 116150 D 326297 CDS YP_925986.1 119773246 4602361 117247..118344 1 NC_008700.1 KEGG: son:SO4679 glycosyl transferase, group 1 family protein; glycoside hydrolase 118344 4602361 Sama_0104 Shewanella amazonensis SB2B glycoside hydrolase YP_925986.1 117247 D 326297 CDS YP_925987.1 119773247 4602362 complement(118400..119377) 1 NC_008700.1 KEGG: vch:VC0229 hypothetical protein; hypothetical protein 119377 4602362 Sama_0105 Shewanella amazonensis SB2B hypothetical protein YP_925987.1 118400 R 326297 CDS YP_925988.1 119773248 4602363 complement(119428..120150) 1 NC_008700.1 KEGG: vch:VC0230 hypothetical protein; hypothetical protein 120150 4602363 Sama_0106 Shewanella amazonensis SB2B hypothetical protein YP_925988.1 119428 R 326297 CDS YP_925989.1 119773249 4602364 complement(120147..121730) 1 NC_008700.1 KEGG: vch:VC0231 hypothetical protein; hypothetical protein 121730 4602364 Sama_0107 Shewanella amazonensis SB2B hypothetical protein YP_925989.1 120147 R 326297 CDS YP_925990.1 119773250 4602365 complement(121738..122112) 1 NC_008700.1 KEGG: vch:VC0232 hypothetical protein; hypothetical protein 122112 4602365 Sama_0108 Shewanella amazonensis SB2B hypothetical protein YP_925990.1 121738 R 326297 CDS YP_925991.1 119773251 4602366 complement(122136..123344) 1 NC_008700.1 KEGG: son:SO4681 glycosyl transferase, group 1 family protein; glycoside hydrolase 123344 4602366 Sama_0109 Shewanella amazonensis SB2B glycoside hydrolase YP_925991.1 122136 R 326297 CDS YP_925992.1 119773252 4602367 123549..124118 1 NC_008700.1 KEGG: son:SO4684 phosphopantetheine adenylyltransferase; pantetheine-phosphate adenylyltransferase 124118 4602367 Sama_0110 Shewanella amazonensis SB2B pantetheine-phosphate adenylyltransferase YP_925992.1 123549 D 326297 CDS YP_925993.1 119773253 4602368 124137..125621 1 NC_008700.1 KEGG: sdn:Sden_0209 hypothetical protein; hypothetical protein 125621 4602368 Sama_0111 Shewanella amazonensis SB2B hypothetical protein YP_925993.1 124137 D 326297 CDS YP_925994.1 119773254 4602369 125758..126489 1 NC_008700.1 KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 126489 4602369 Sama_0112 Shewanella amazonensis SB2B glycosyl transferase family protein YP_925994.1 125758 D 326297 CDS YP_925995.1 119773255 4602370 126486..127163 1 NC_008700.1 KEGG: son:SO4689 hypothetical protein; hypothetical protein 127163 4602370 Sama_0113 Shewanella amazonensis SB2B hypothetical protein YP_925995.1 126486 D 326297 CDS YP_925996.1 119773256 4602371 127172..128935 1 NC_008700.1 KEGG: son:SO4690 hypothetical protein; hypothetical protein 128935 4602371 Sama_0114 Shewanella amazonensis SB2B hypothetical protein YP_925996.1 127172 D 326297 CDS YP_925997.1 119773257 4602372 129110..130114 1 NC_008700.1 KEGG: bce:BC0671 sphingomyelin phosphodiesterase; phospholipase C 130114 4602372 Sama_0115 Shewanella amazonensis SB2B phospholipase C YP_925997.1 129110 D 326297 CDS YP_925998.1 119773258 4602373 complement(130181..131071) 1 NC_008700.1 KEGG: rfr:Rfer_3745 protein of unknown function DUF6, transmembrane; hypothetical protein 131071 4602373 Sama_0116 Shewanella amazonensis SB2B hypothetical protein YP_925998.1 130181 R 326297 CDS YP_925999.1 119773259 4602374 complement(131236..132051) 1 NC_008700.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 132051 4602374 Sama_0117 Shewanella amazonensis SB2B formamidopyrimidine-DNA glycosylase YP_925999.1 131236 R 326297 CDS YP_926000.1 119773260 4602375 complement(132080..132517) 1 NC_008700.1 KEGG: son:SO4725 hypothetical protein; hypothetical protein 132517 4602375 Sama_0118 Shewanella amazonensis SB2B hypothetical protein YP_926000.1 132080 R 326297 CDS YP_926001.1 119773261 4602376 complement(132579..133562) 1 NC_008700.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 133562 4602376 Sama_0119 Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein A YP_926001.1 132579 R 326297 CDS YP_926002.1 119773262 4602377 complement(133572..135371) 1 NC_008700.1 KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 135371 4602377 Sama_0120 Shewanella amazonensis SB2B putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_926002.1 133572 R 326297 CDS YP_926003.1 119773263 4602378 complement(135388..135978) 1 NC_008700.1 KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein 135978 4602378 Sama_0121 Shewanella amazonensis SB2B molybdopterin-guanine dinucleotide biosynthesis protein YP_926003.1 135388 R 326297 CDS YP_926004.1 119773264 4602379 complement(135962..136654) 1 NC_008700.1 KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 136654 4602379 Sama_0122 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_926004.1 135962 R 326297 CDS YP_926005.1 119773265 4602380 complement(136654..137361) 1 NC_008700.1 KEGG: son:SO4720 ABC transporter, permease protein; ABC transporter permease 137361 4602380 Sama_0123 Shewanella amazonensis SB2B ABC transporter permease YP_926005.1 136654 R 326297 CDS YP_926006.1 119773266 4602381 complement(137358..138170) 1 NC_008700.1 KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; putative sulfate transport system substrate-binding protein 138170 4602381 Sama_0124 Shewanella amazonensis SB2B putative sulfate transport system substrate-binding protein YP_926006.1 137358 R 326297 CDS YP_926007.1 119773267 4602382 138447..139829 1 NC_008700.1 KEGG: son:SO4718 sigma-54 dependent response regulator; response regulator receiver protein 139829 4602382 Sama_0125 Shewanella amazonensis SB2B response regulator receiver protein YP_926007.1 138447 D 326297 CDS YP_926008.1 119773268 4602383 139832..141958 1 NC_008700.1 KEGG: son:SO4717 sensor histidine kinase; sensor histidine kinase 141958 4602383 Sama_0126 Shewanella amazonensis SB2B sensor histidine kinase YP_926008.1 139832 D 326297 CDS YP_926009.1 119773269 4602384 complement(142808..143269) 1 NC_008700.1 KEGG: son:SO4716 acetyltransferase, GNAT family; acetyltransferase 143269 4602384 Sama_0127 Shewanella amazonensis SB2B acetyltransferase YP_926009.1 142808 R 326297 CDS YP_926010.1 119773270 4602385 complement(143351..144010) 1 NC_008700.1 KEGG: son:SO4715 hypothetical protein; hypothetical protein 144010 4602385 Sama_0128 Shewanella amazonensis SB2B hypothetical protein YP_926010.1 143351 R 326297 CDS YP_926011.1 119773271 4602386 144286..145017 1 NC_008700.1 KEGG: son:SO4714 hypothetical protein; hypothetical protein 145017 4602386 Sama_0129 Shewanella amazonensis SB2B hypothetical protein YP_926011.1 144286 D 326297 CDS YP_926012.1 119773272 4602387 complement(145079..146437) 1 NC_008700.1 KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; menaquinone-specific isochorismate synthase 146437 4602387 Sama_0130 Shewanella amazonensis SB2B menaquinone-specific isochorismate synthase YP_926012.1 145079 R 326297 CDS YP_926013.1 119773273 4602388 146791..148878 1 NC_008700.1 KEGG: nha:Nham_3500 TonB-dependent receptor; TonB-dependent receptor 148878 4602388 Sama_0131 Shewanella amazonensis SB2B TonB-dependent receptor YP_926013.1 146791 D 326297 CDS YP_926014.1 119773274 4602389 148875..150365 1 NC_008700.1 KEGG: shm:Shewmr7_3959 ABC transporter related; ABC transporter-like protein 150365 4602389 Sama_0132 Shewanella amazonensis SB2B ABC transporter-like protein YP_926014.1 148875 D 326297 CDS YP_926015.1 119773275 4602390 150362..151033 1 NC_008700.1 KEGG: pca:Pcar_2395 hypothetical protein; hypothetical protein 151033 4602390 Sama_0133 Shewanella amazonensis SB2B hypothetical protein YP_926015.1 150362 D 326297 CDS YP_926016.1 119773276 4602391 151023..151580 1 NC_008700.1 KEGG: pca:Pcar_2394 hypothetical protein; hypothetical protein 151580 4602391 Sama_0134 Shewanella amazonensis SB2B hypothetical protein YP_926016.1 151023 D 326297 CDS YP_926017.1 119773277 4602392 151580..152323 1 NC_008700.1 KEGG: pca:Pcar_2393 hypothetical protein; hypothetical protein 152323 4602392 Sama_0135 Shewanella amazonensis SB2B hypothetical protein YP_926017.1 151580 D 326297 CDS YP_926018.1 119773278 4602393 152768..153964 1 NC_008700.1 KEGG: son:SO4711 HD domain protein; putative metal dependent phosphohydrolase 153964 4602393 Sama_0136 Shewanella amazonensis SB2B putative metal dependent phosphohydrolase YP_926018.1 152768 D 326297 CDS YP_926019.1 119773279 4602394 complement(153990..154754) 1 NC_008700.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 154754 4602394 Sama_0137 Shewanella amazonensis SB2B molybdopterin biosynthesis protein MoeB YP_926019.1 153990 R 326297 CDS YP_926020.1 119773280 4602395 complement(154760..156001) 1 NC_008700.1 KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdopterin biosynthesis MoeA protein 156001 4602395 Sama_0138 Shewanella amazonensis SB2B molybdopterin biosynthesis MoeA protein YP_926020.1 154760 R 326297 CDS YP_926021.1 119773281 4602396 complement(156138..157208) 1 NC_008700.1 KEGG: sdn:Sden_3429 secretion protein HlyD; secretion protein HlyD 157208 4602396 Sama_0139 Shewanella amazonensis SB2B secretion protein HlyD YP_926021.1 156138 R 326297 CDS YP_926022.1 119773282 4602397 complement(157205..160285) 1 NC_008700.1 KEGG: sdn:Sden_3430 acriflavin resistance protein; acriflavin resistance protein 160285 4602397 Sama_0140 Shewanella amazonensis SB2B acriflavin resistance protein YP_926022.1 157205 R 326297 CDS YP_926023.1 119773283 4602398 160498..161025 1 NC_008700.1 KEGG: son:SO0139 ferritin; ferritin 161025 4602398 Sama_0141 Shewanella amazonensis SB2B ferritin YP_926023.1 160498 D 326297 CDS YP_926024.1 119773284 4602399 complement(161067..164276) 1 NC_008700.1 KEGG: son:SO0141 sensory box protein; sensory box protein 164276 4602399 Sama_0142 Shewanella amazonensis SB2B sensory box protein YP_926024.1 161067 R 326297 CDS YP_926025.1 119773285 4602400 complement(164603..165271) 1 NC_008700.1 KEGG: son:SO0142 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 165271 4602400 Sama_0143 Shewanella amazonensis SB2B 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_926025.1 164603 R 326297 CDS YP_926026.1 119773286 4602401 165836..167947 1 NC_008700.1 KEGG: son:SO0144 protease II; oligopeptidase B 167947 4602401 Sama_0144 Shewanella amazonensis SB2B oligopeptidase B YP_926026.1 165836 D 326297 CDS YP_926027.1 119773287 4602402 167944..168264 1 NC_008700.1 KEGG: son:SO0145 hypothetical URI domain endonuclease; endonuclease 168264 4602402 Sama_0145 Shewanella amazonensis SB2B endonuclease YP_926027.1 167944 D 326297 CDS YP_926028.1 119773288 4602403 168261..168920 1 NC_008700.1 KEGG: cps:CPS_1865 DNA-binding response regulator; response regulator receiver protein 168920 4602403 Sama_0146 Shewanella amazonensis SB2B response regulator receiver protein YP_926028.1 168261 D 326297 CDS YP_926029.1 119773289 4602404 168917..170131 1 NC_008700.1 KEGG: cps:CPS_1866 sensor histidine kinase; signal transduction histidine kinase-like protein 170131 4602404 Sama_0147 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926029.1 168917 D 326297 CDS YP_926030.1 119773290 4602405 170186..170986 1 NC_008700.1 KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; hypothetical protein 170986 4602405 Sama_0148 Shewanella amazonensis SB2B hypothetical protein YP_926030.1 170186 D 326297 CDS YP_926031.1 119773291 4602406 171444..172322 1 NC_008700.1 KEGG: sdn:Sden_0116 hypothetical protein; hypothetical protein 172322 4602406 Sama_0149 Shewanella amazonensis SB2B hypothetical protein YP_926031.1 171444 D 326297 CDS YP_926032.1 119773292 4602407 172620..173411 1 NC_008700.1 KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 173411 4602407 Sama_0150 Shewanella amazonensis SB2B putative SAM-dependent methyltransferase YP_926032.1 172620 D 326297 CDS YP_926033.1 119773293 4602408 173735..178651 1 NC_008700.1 KEGG: son:SO4539 serine protease, subtilase family; serine protease 178651 4602408 Sama_0151 Shewanella amazonensis SB2B serine protease YP_926033.1 173735 D 326297 CDS YP_926034.1 119773294 4602409 178728..179651 1 NC_008700.1 KEGG: pha:PSHAa0851 MltA-interacting MipA ; signal peptide; hypothetical protein 179651 4602409 Sama_0152 Shewanella amazonensis SB2B hypothetical protein YP_926034.1 178728 D 326297 CDS YP_926035.1 119773295 4602410 179654..180034 1 NC_008700.1 KEGG: cps:CPS_1424 hypothetical protein; hypothetical protein 180034 4602410 Sama_0153 Shewanella amazonensis SB2B hypothetical protein YP_926035.1 179654 D 326297 CDS YP_926036.1 119773296 4602411 180034..180747 1 NC_008700.1 KEGG: sde:Sde_0550 two component transcriptional regulator, winged helix family; response regulator receiver protein 180747 4602411 Sama_0154 Shewanella amazonensis SB2B response regulator receiver protein YP_926036.1 180034 D 326297 CDS YP_926037.1 119773297 4602412 180750..181979 1 NC_008700.1 KEGG: pae:PA1158 probable two-component sensor; signal transduction histidine kinase-like protein 181979 4602412 Sama_0155 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926037.1 180750 D 326297 CDS YP_926038.1 119773298 4602413 182293..185619 1 NC_008700.1 KEGG: cpf:CPF_1301 glycosyl hydrolase, family 31/fibronectin type III domain protein; glycosyl hydrolase family protein 185619 4602413 Sama_0156 Shewanella amazonensis SB2B glycosyl hydrolase family protein YP_926038.1 182293 D 326297 CDS YP_926039.1 119773299 4602414 complement(185703..186641) 1 NC_008700.1 KEGG: mxa:MXAN_7313 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 186641 4602414 Sama_0157 Shewanella amazonensis SB2B metallo-beta-lactamase family protein YP_926039.1 185703 R 326297 CDS YP_926040.1 119773300 4602415 186759..187667 1 NC_008700.1 KEGG: mxa:MXAN_7312 transcriptional regulator, LysR family; LysR family transcriptional regulator 187667 4602415 Sama_0158 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926040.1 186759 D 326297 CDS YP_926041.1 119773301 4602416 187894..188409 1 NC_008700.1 KEGG: cvi:CV4280 hypothetical protein; hypothetical protein 188409 4602416 Sama_0159 Shewanella amazonensis SB2B hypothetical protein YP_926041.1 187894 D 326297 CDS YP_926042.1 119773302 4602417 188547..190193 1 NC_008700.1 KEGG: cps:CPS_3206 glutamate synthase domain protein; glutamate synthase domain-containing protein 190193 4602417 Sama_0160 Shewanella amazonensis SB2B glutamate synthase domain-containing protein YP_926042.1 188547 D 326297 CDS YP_926043.1 119773303 4602418 complement(190244..192076) 1 NC_008700.1 KEGG: son:SO0152 hypothetical carboxypeptidase; carboxypeptidase 192076 4602418 Sama_0161 Shewanella amazonensis SB2B carboxypeptidase YP_926043.1 190244 R 326297 CDS YP_926044.1 119773304 4602419 complement(192484..192888) 1 NC_008700.1 KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 192888 4602419 Sama_0162 Shewanella amazonensis SB2B biopolymer transport protein ExbD/TolR YP_926044.1 192484 R 326297 CDS YP_926045.1 119773305 4602420 complement(193206..193613) 1 NC_008700.1 KEGG: hch:HCH_05473 hypothetical protein; hypothetical protein 193613 4602420 Sama_0163 Shewanella amazonensis SB2B hypothetical protein YP_926045.1 193206 R 326297 CDS YP_926046.1 119773306 4606033 complement(193980..195521) 1 NC_008700.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 195521 4606033 Sama_0165 Shewanella amazonensis SB2B phosphoenolpyruvate carboxykinase YP_926046.1 193980 R 326297 CDS YP_926047.1 119773307 4602422 complement(195721..196605) 1 NC_008700.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 196605 hslO 4602422 hslO Shewanella amazonensis SB2B Hsp33-like chaperonin YP_926047.1 195721 R 326297 CDS YP_926048.1 119773308 4602423 complement(196621..197025) 1 NC_008700.1 KEGG: son:SO0164 heat shock protein 15; heat shock protein 15 197025 4602423 Sama_0167 Shewanella amazonensis SB2B heat shock protein 15 YP_926048.1 196621 R 326297 CDS YP_926049.1 119773309 4602424 197297..198220 1 NC_008700.1 KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 198220 4602424 Sama_0168 Shewanella amazonensis SB2B general secretion pathway protein C YP_926049.1 197297 D 326297 CDS YP_926050.1 119773310 4602425 198247..200358 1 NC_008700.1 KEGG: sdn:Sden_0121 type II and III secretion system protein; type II and III secretion system protein 200358 4602425 Sama_0169 Shewanella amazonensis SB2B type II and III secretion system protein YP_926050.1 198247 D 326297 CDS YP_926051.1 119773311 4602426 200369..201931 1 NC_008700.1 KEGG: son:SO0167 general secretion pathway protein E; general secretion pathway protein E 201931 4602426 Sama_0170 Shewanella amazonensis SB2B general secretion pathway protein E YP_926051.1 200369 D 326297 CDS YP_926052.1 119773312 4602427 201935..203158 1 NC_008700.1 KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 203158 4602427 Sama_0171 Shewanella amazonensis SB2B general secretion pathway protein F YP_926052.1 201935 D 326297 CDS YP_926053.1 119773313 4602428 203196..203627 1 NC_008700.1 KEGG: son:SO0169 general secretion pathway protein G; general secretion pathway protein G 203627 4602428 Sama_0172 Shewanella amazonensis SB2B general secretion pathway protein G YP_926053.1 203196 D 326297 CDS YP_926054.1 119773314 4602429 203640..204209 1 NC_008700.1 KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 204209 4602429 Sama_0173 Shewanella amazonensis SB2B general secretion pathway protein H YP_926054.1 203640 D 326297 CDS YP_926055.1 119773315 4602430 204232..204597 1 NC_008700.1 KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 204597 4602430 Sama_0174 Shewanella amazonensis SB2B general secretion pathway protein I YP_926055.1 204232 D 326297 CDS YP_926056.1 119773316 4602431 204578..205357 1 NC_008700.1 KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 205357 4602431 Sama_0175 Shewanella amazonensis SB2B general secretion pathway protein J YP_926056.1 204578 D 326297 CDS YP_926057.1 119773317 4602432 205357..206331 1 NC_008700.1 KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 206331 4602432 Sama_0176 Shewanella amazonensis SB2B general secretion pathway protein K YP_926057.1 205357 D 326297 CDS YP_926058.1 119773318 4602433 206384..207580 1 NC_008700.1 KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 207580 4602433 Sama_0177 Shewanella amazonensis SB2B general secretion pathway protein L YP_926058.1 206384 D 326297 CDS YP_926059.1 119773319 4602434 207582..208058 1 NC_008700.1 KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway protein M 208058 4602434 Sama_0178 Shewanella amazonensis SB2B general secretion pathway protein M YP_926059.1 207582 D 326297 CDS YP_926060.1 119773320 4602435 208078..208833 1 NC_008700.1 KEGG: son:SO0176 general secretion pathway protein N; general secretion pathway protein N 208833 4602435 Sama_0179 Shewanella amazonensis SB2B general secretion pathway protein N YP_926060.1 208078 D 326297 CDS YP_926061.1 119773321 4602436 complement(208875..209603) 1 NC_008700.1 hypothetical protein 209603 4602436 Sama_0180 Shewanella amazonensis SB2B hypothetical protein YP_926061.1 208875 R 326297 CDS YP_926062.1 119773322 4602437 complement(209665..210438) 1 NC_008700.1 hypothetical protein 210438 4602437 Sama_0181 Shewanella amazonensis SB2B hypothetical protein YP_926062.1 209665 R 326297 CDS YP_926063.1 119773323 4602438 complement(210514..211221) 1 NC_008700.1 KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; HAD family hydrolase 211221 4602438 Sama_0182 Shewanella amazonensis SB2B HAD family hydrolase YP_926063.1 210514 R 326297 CDS YP_926064.1 119773324 4602439 211253..211804 1 NC_008700.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 211804 nudE 4602439 nudE Shewanella amazonensis SB2B ADP-ribose diphosphatase NudE YP_926064.1 211253 D 326297 CDS YP_926065.1 119773325 4602440 211849..212661 1 NC_008700.1 KEGG: son:SO0191 cysQ protein; cysQ protein 212661 4602440 Sama_0184 Shewanella amazonensis SB2B cysQ protein YP_926065.1 211849 D 326297 CDS YP_926066.1 119773326 4602441 212648..213085 1 NC_008700.1 KEGG: cvi:CV0908 probable acetyltransferase; putative acetyltransferase 213085 4602441 Sama_0185 Shewanella amazonensis SB2B putative acetyltransferase YP_926066.1 212648 D 326297 CDS YP_926067.1 119773327 4602442 213204..213869 1 NC_008700.1 KEGG: son:SO0193 transcriptional regulator, TetR family; TetR family transcriptional regulator 213869 4602442 Sama_0186 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_926067.1 213204 D 326297 CDS YP_926068.1 119773328 4602443 213866..215722 1 NC_008700.1 KEGG: son:SO0194 acyltransferase family protein; acyltransferase family protein 215722 4602443 Sama_0187 Shewanella amazonensis SB2B acyltransferase family protein YP_926068.1 213866 D 326297 CDS YP_926069.1 119773329 4602444 215823..217106 1 NC_008700.1 KEGG: sdn:Sden_0226 hypothetical protein; hypothetical protein 217106 4602444 Sama_0188 Shewanella amazonensis SB2B hypothetical protein YP_926069.1 215823 D 326297 CDS YP_926070.1 119773330 4602445 complement(217155..218258) 1 NC_008700.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 218258 4602445 Sama_0189 Shewanella amazonensis SB2B tRNA 2-selenouridine synthase YP_926070.1 217155 R 326297 CDS YP_926071.1 119773331 4602446 complement(218255..219313) 1 NC_008700.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 219313 4602446 Sama_0190 Shewanella amazonensis SB2B selenophosphate synthetase YP_926071.1 218255 R 326297 CDS YP_926072.1 119773332 4602447 complement(219402..220520) 1 NC_008700.1 KEGG: sdn:Sden_0229 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase 220520 4602447 Sama_0191 Shewanella amazonensis SB2B stearoyl-CoA 9-desaturase YP_926072.1 219402 R 326297 CDS YP_926073.1 119773333 4602448 220651..221265 1 NC_008700.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 221265 4602448 Sama_0192 Shewanella amazonensis SB2B DNA-binding transcriptional repressor FabR YP_926073.1 220651 D 326297 CDS YP_926074.1 119773334 4602449 complement(221311..222408) 1 NC_008700.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 222408 4602449 Sama_0193 Shewanella amazonensis SB2B tRNA (uracil-5-)-methyltransferase YP_926074.1 221311 R 326297 CDS YP_926075.1 119773335 4602450 222531..223331 1 NC_008700.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 223331 4602450 Sama_0194 Shewanella amazonensis SB2B glutamate racemase YP_926075.1 222531 D 326297 CDS YP_926076.1 119773336 4602451 complement(223340..223795) 1 NC_008700.1 KEGG: sdn:Sden_0233 RNA-binding protein; RNA-binding protein 223795 4602451 Sama_0195 Shewanella amazonensis SB2B RNA-binding protein YP_926076.1 223340 R 326297 CDS YP_926077.1 119773337 4605911 229927..230940 1 NC_008700.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 230940 murB 4605911 murB Shewanella amazonensis SB2B UDP-N-acetylenolpyruvoylglucosamine reductase YP_926077.1 229927 D 326297 CDS YP_926078.1 119773338 4602453 230961..231914 1 NC_008700.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 231914 4602453 Sama_0197 Shewanella amazonensis SB2B biotin--protein ligase YP_926078.1 230961 D 326297 CDS YP_926079.1 119773339 4602454 complement(231976..232923) 1 NC_008700.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 232923 4602454 Sama_0198 Shewanella amazonensis SB2B pantothenate kinase YP_926079.1 231976 R 326297 CDS YP_926080.1 119773340 4605915 233618..234802 1 NC_008700.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 234802 4605915 Sama_0199 Shewanella amazonensis SB2B elongation factor Tu YP_926080.1 233618 D 326297 CDS YP_926081.1 119773341 4602456 235047..235418 1 NC_008700.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 235418 secE 4602456 secE Shewanella amazonensis SB2B preprotein translocase subunit SecE YP_926081.1 235047 D 326297 CDS YP_926082.1 119773342 4602457 235423..235974 1 NC_008700.1 KEGG: son:SO0219 transcription antitermination protein NusG; transcription antitermination protein NusG 235974 4602457 Sama_0201 Shewanella amazonensis SB2B transcription antitermination protein NusG YP_926082.1 235423 D 326297 CDS YP_926083.1 119773343 4602458 236098..236526 1 NC_008700.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 236526 rplK 4602458 rplK Shewanella amazonensis SB2B 50S ribosomal protein L11 YP_926083.1 236098 D 326297 CDS YP_926084.1 119773344 4602459 236531..237232 1 NC_008700.1 KEGG: son:SO0221 50S ribosomal protein L1; 50S ribosomal protein L1 237232 4602459 Sama_0203 Shewanella amazonensis SB2B 50S ribosomal protein L1 YP_926084.1 236531 D 326297 CDS YP_926085.1 119773345 4602460 237486..237986 1 NC_008700.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 237986 rplJ 4602460 rplJ Shewanella amazonensis SB2B 50S ribosomal protein L10 YP_926085.1 237486 D 326297 CDS YP_926086.1 119773346 4602461 238041..238412 1 NC_008700.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 238412 rplL 4602461 rplL Shewanella amazonensis SB2B 50S ribosomal protein L7/L12 YP_926086.1 238041 D 326297 CDS YP_926087.1 119773347 4602462 238654..242682 1 NC_008700.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 242682 rpoB 4602462 rpoB Shewanella amazonensis SB2B DNA-directed RNA polymerase subunit beta YP_926087.1 238654 D 326297 CDS YP_926088.1 119773348 4602463 242768..246982 1 NC_008700.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 246982 4602463 Sama_0207 Shewanella amazonensis SB2B DNA-directed RNA polymerase subunit beta' YP_926088.1 242768 D 326297 CDS YP_926089.1 119773349 4602464 247158..247532 1 NC_008700.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 247532 rpsL 4602464 rpsL Shewanella amazonensis SB2B 30S ribosomal protein S12 YP_926089.1 247158 D 326297 CDS YP_926090.1 119773350 4602465 247612..248082 1 NC_008700.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 248082 4602465 Sama_0209 Shewanella amazonensis SB2B 30S ribosomal protein S7 YP_926090.1 247612 D 326297 CDS YP_926091.1 119773351 4602466 248164..250260 1 NC_008700.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 250260 4602466 Sama_0210 Shewanella amazonensis SB2B elongation factor G YP_926091.1 248164 D 326297 CDS YP_926092.1 119773352 4602467 250344..251528 1 NC_008700.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 251528 4602467 Sama_0211 Shewanella amazonensis SB2B elongation factor Tu YP_926092.1 250344 D 326297 CDS YP_926093.1 119773353 4602468 251892..252203 1 NC_008700.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 252203 rpsJ 4602468 rpsJ Shewanella amazonensis SB2B 30S ribosomal protein S10 YP_926093.1 251892 D 326297 CDS YP_926094.1 119773354 4602469 252232..252870 1 NC_008700.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 252870 rplC 4602469 rplC Shewanella amazonensis SB2B 50S ribosomal protein L3 YP_926094.1 252232 D 326297 CDS YP_926095.1 119773355 4602470 252888..253493 1 NC_008700.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 253493 rplD 4602470 rplD Shewanella amazonensis SB2B 50S ribosomal protein L4 YP_926095.1 252888 D 326297 CDS YP_926096.1 119773356 4602471 253490..253792 1 NC_008700.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 253792 rplW 4602471 rplW Shewanella amazonensis SB2B 50S ribosomal protein L23 YP_926096.1 253490 D 326297 CDS YP_926097.1 119773357 4602472 253804..254628 1 NC_008700.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 254628 rplB 4602472 rplB Shewanella amazonensis SB2B 50S ribosomal protein L2 YP_926097.1 253804 D 326297 CDS YP_926098.1 119773358 4602473 254644..254922 1 NC_008700.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 254922 rpsS 4602473 rpsS Shewanella amazonensis SB2B 30S ribosomal protein S19 YP_926098.1 254644 D 326297 CDS YP_926099.1 119773359 4602474 254938..255270 1 NC_008700.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 255270 rplV 4602474 rplV Shewanella amazonensis SB2B 50S ribosomal protein L22 YP_926099.1 254938 D 326297 CDS YP_926100.1 119773360 4602475 255284..255976 1 NC_008700.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 255976 rpsC 4602475 rpsC Shewanella amazonensis SB2B 30S ribosomal protein S3 YP_926100.1 255284 D 326297 CDS YP_926101.1 119773361 4602476 255988..256398 1 NC_008700.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 256398 rplP 4602476 rplP Shewanella amazonensis SB2B 50S ribosomal protein L16 YP_926101.1 255988 D 326297 CDS YP_926102.1 119773362 4602477 256398..256589 1 NC_008700.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 256589 4602477 Sama_0221 Shewanella amazonensis SB2B 50S ribosomal protein L29 YP_926102.1 256398 D 326297 CDS YP_926103.1 119773363 4602478 256589..256837 1 NC_008700.1 KEGG: son:SO0240 30S ribosomal subunit protein S17; 30S ribosomal protein S17 256837 4602478 Sama_0222 Shewanella amazonensis SB2B 30S ribosomal protein S17 YP_926103.1 256589 D 326297 CDS YP_926104.1 119773364 4602479 257010..257378 1 NC_008700.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 257378 rplN 4602479 rplN Shewanella amazonensis SB2B 50S ribosomal protein L14 YP_926104.1 257010 D 326297 CDS YP_926105.1 119773365 4602480 257390..257704 1 NC_008700.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 257704 rplX 4602480 rplX Shewanella amazonensis SB2B 50S ribosomal protein L24 YP_926105.1 257390 D 326297 CDS YP_926106.1 119773366 4602481 257717..258256 1 NC_008700.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 258256 rplE 4602481 rplE Shewanella amazonensis SB2B 50S ribosomal protein L5 YP_926106.1 257717 D 326297 CDS YP_926107.1 119773367 4602482 258268..258573 1 NC_008700.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 258573 rpsN 4602482 rpsN Shewanella amazonensis SB2B 30S ribosomal protein S14 YP_926107.1 258268 D 326297 CDS YP_926108.1 119773368 4602483 258598..258993 1 NC_008700.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 258993 rpsH 4602483 rpsH Shewanella amazonensis SB2B 30S ribosomal protein S8 YP_926108.1 258598 D 326297 CDS YP_926109.1 119773369 4602484 259004..259537 1 NC_008700.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 259537 rplF 4602484 rplF Shewanella amazonensis SB2B 50S ribosomal protein L6 YP_926109.1 259004 D 326297 CDS YP_926110.1 119773370 4602485 259547..259897 1 NC_008700.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 259897 rplR 4602485 rplR Shewanella amazonensis SB2B 50S ribosomal protein L18 YP_926110.1 259547 D 326297 CDS YP_926111.1 119773371 4602486 259911..260417 1 NC_008700.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 260417 rpsE 4602486 rpsE Shewanella amazonensis SB2B 30S ribosomal protein S5 YP_926111.1 259911 D 326297 CDS YP_926112.1 119773372 4602487 260424..260603 1 NC_008700.1 KEGG: son:SO0249 50S ribosomal protein L30; 50S ribosomal protein L30 260603 4602487 Sama_0231 Shewanella amazonensis SB2B 50S ribosomal protein L30 YP_926112.1 260424 D 326297 CDS YP_926113.1 119773373 4602488 260606..261040 1 NC_008700.1 late assembly protein; 50S ribosomal protein L15 261040 rplO 4602488 rplO Shewanella amazonensis SB2B 50S ribosomal protein L15 YP_926113.1 260606 D 326297 CDS YP_926114.1 119773374 4602489 261048..262388 1 NC_008700.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 262388 secY 4602489 secY Shewanella amazonensis SB2B preprotein translocase subunit SecY YP_926114.1 261048 D 326297 CDS YP_926115.1 119773375 4602490 262410..262523 1 NC_008700.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 262523 rpmJ 4602490 rpmJ Shewanella amazonensis SB2B 50S ribosomal protein L36 YP_926115.1 262410 D 326297 CDS YP_926116.1 119773376 4602491 262638..262994 1 NC_008700.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 262994 rpsM 4602491 rpsM Shewanella amazonensis SB2B 30S ribosomal protein S13 YP_926116.1 262638 D 326297 CDS YP_926117.1 119773377 4602492 263009..263401 1 NC_008700.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 263401 4602492 Sama_0236 Shewanella amazonensis SB2B 30S ribosomal protein S11 YP_926117.1 263009 D 326297 CDS YP_926118.1 119773378 4602493 263433..264053 1 NC_008700.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 264053 rpsD 4602493 rpsD Shewanella amazonensis SB2B 30S ribosomal protein S4 YP_926118.1 263433 D 326297 CDS YP_926119.1 119773379 4602494 264078..265067 1 NC_008700.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 265067 4602494 Sama_0238 Shewanella amazonensis SB2B DNA-directed RNA polymerase subunit alpha YP_926119.1 264078 D 326297 CDS YP_926120.1 119773380 4602495 265107..265502 1 NC_008700.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 265502 rplQ 4602495 rplQ Shewanella amazonensis SB2B 50S ribosomal protein L17 YP_926120.1 265107 D 326297 CDS YP_926121.1 119773381 4602496 complement(265558..266529) 1 NC_008700.1 KEGG: vch:VCA0212 hypothetical protein; hypothetical protein 266529 4602496 Sama_0240 Shewanella amazonensis SB2B hypothetical protein YP_926121.1 265558 R 326297 CDS YP_926122.1 119773382 4602497 complement(266611..267099) 1 NC_008700.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 267099 4602497 Sama_0241 Shewanella amazonensis SB2B cytochrome c-type biogenesis protein CcmE YP_926122.1 266611 R 326297 CDS YP_926123.1 119773383 4602498 complement(267096..267296) 1 NC_008700.1 KEGG: son:SO0260 heme exporter protein CcmD; heme exporter protein CcmD 267296 4602498 Sama_0242 Shewanella amazonensis SB2B heme exporter protein CcmD YP_926123.1 267096 R 326297 CDS YP_926124.1 119773384 4602499 complement(267296..268042) 1 NC_008700.1 KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC 268042 4602499 Sama_0243 Shewanella amazonensis SB2B heme exporter protein CcmC YP_926124.1 267296 R 326297 CDS YP_926125.1 119773385 4602500 complement(268044..268730) 1 NC_008700.1 KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 268730 4602500 Sama_0244 Shewanella amazonensis SB2B heme exporter protein CcmB YP_926125.1 268044 R 326297 CDS YP_926126.1 119773386 4602501 complement(268742..269395) 1 NC_008700.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 269395 4602501 Sama_0245 Shewanella amazonensis SB2B cytochrome c biogenesis protein CcmA YP_926126.1 268742 R 326297 CDS YP_926127.1 119773387 4602502 269706..269999 1 NC_008700.1 KEGG: son:SO0264 cytochrome c; cytochrome c 269999 4602502 Sama_0246 Shewanella amazonensis SB2B cytochrome c YP_926127.1 269706 D 326297 CDS YP_926128.1 119773388 4602503 complement(270148..271401) 1 NC_008700.1 KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; cytochrome c-type biogenesis protein CcmH 271401 4602503 Sama_0247 Shewanella amazonensis SB2B cytochrome c-type biogenesis protein CcmH YP_926128.1 270148 R 326297 CDS YP_926129.1 119773389 4602504 271790..273766 1 NC_008700.1 KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 273766 4602504 Sama_0248 Shewanella amazonensis SB2B cytochrome c-type biogenesis protein CcmF YP_926129.1 271790 D 326297 CDS YP_926130.1 119773390 4602505 273781..274368 1 NC_008700.1 KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; thiol:disulfide interchange protein DsbE 274368 4602505 Sama_0249 Shewanella amazonensis SB2B thiol:disulfide interchange protein DsbE YP_926130.1 273781 D 326297 CDS YP_926131.1 119773391 4602506 274365..274868 1 NC_008700.1 KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome c-type biogenesis protein CcmH 274868 4602506 Sama_0250 Shewanella amazonensis SB2B cytochrome c-type biogenesis protein CcmH YP_926131.1 274365 D 326297 CDS YP_926132.1 119773392 4602507 274865..275446 1 NC_008700.1 KEGG: son:SO0269 thioredoxin, putative; thioredoxin 275446 4602507 Sama_0251 Shewanella amazonensis SB2B thioredoxin YP_926132.1 274865 D 326297 CDS YP_926133.1 119773393 4605923 288026..289300 1 NC_008700.1 KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 289300 4605923 Sama_0252 Shewanella amazonensis SB2B competence/damage-inducible protein CinA YP_926133.1 288026 D 326297 CDS YP_926134.1 119773394 4602509 complement(289318..289854) 1 NC_008700.1 KEGG: son:SO0273 hypothetical protein; hypothetical protein 289854 4602509 Sama_0253 Shewanella amazonensis SB2B hypothetical protein YP_926134.1 289318 R 326297 CDS YP_926135.1 119773395 4602510 complement(289851..292514) 1 NC_008700.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 292514 4602510 Sama_0254 Shewanella amazonensis SB2B phosphoenolpyruvate carboxylase YP_926135.1 289851 R 326297 CDS YP_926136.1 119773396 4602511 complement(292656..293807) 1 NC_008700.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 293807 4602511 Sama_0255 Shewanella amazonensis SB2B acetylornithine deacetylase YP_926136.1 292656 R 326297 CDS YP_926137.1 119773397 4602512 294064..295059 1 NC_008700.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 295059 argC 4602512 argC Shewanella amazonensis SB2B N-acetyl-gamma-glutamyl-phosphate reductase YP_926137.1 294064 D 326297 CDS YP_926138.1 119773398 4602513 295075..295863 1 NC_008700.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 295863 4602513 Sama_0257 Shewanella amazonensis SB2B acetylglutamate kinase YP_926138.1 295075 D 326297 CDS YP_926139.1 119773399 4602514 295867..296772 1 NC_008700.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 296772 4602514 Sama_0258 Shewanella amazonensis SB2B ornithine carbamoyltransferase YP_926139.1 295867 D 326297 CDS YP_926140.1 119773400 4602515 296823..298046 1 NC_008700.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 298046 4602515 Sama_0259 Shewanella amazonensis SB2B argininosuccinate synthase YP_926140.1 296823 D 326297 CDS YP_926141.1 119773401 4602516 298127..299497 1 NC_008700.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 299497 4602516 Sama_0260 Shewanella amazonensis SB2B argininosuccinate lyase YP_926141.1 298127 D 326297 CDS YP_926142.1 119773402 4602517 complement(299560..301215) 1 NC_008700.1 KEGG: she:Shewmr4_3617 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 301215 4602517 Sama_0261 Shewanella amazonensis SB2B AMP-dependent synthetase and ligase YP_926142.1 299560 R 326297 CDS YP_926143.1 119773403 4602518 complement(301630..302355) 1 NC_008700.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 302355 4602518 Sama_0262 Shewanella amazonensis SB2B tRNA guanosine-2'-O-methyltransferase YP_926143.1 301630 R 326297 CDS YP_926144.1 119773404 4602519 complement(302424..302807) 1 NC_008700.1 KEGG: sdn:Sden_3436 YjgF-like protein; zinc carboxypeptidase-like protein 302807 4602519 Sama_0263 Shewanella amazonensis SB2B zinc carboxypeptidase-like protein YP_926144.1 302424 R 326297 CDS YP_926145.1 119773405 4602520 complement(302833..304932) 1 NC_008700.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 304932 4602520 Sama_0264 Shewanella amazonensis SB2B bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_926145.1 302833 R 326297 CDS YP_926146.1 119773406 4602521 complement(304957..305235) 1 NC_008700.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 305235 rpoZ 4602521 rpoZ Shewanella amazonensis SB2B DNA-directed RNA polymerase subunit omega YP_926146.1 304957 R 326297 CDS YP_926147.1 119773407 4602522 complement(305313..305936) 1 NC_008700.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 305936 gmk 4602522 gmk Shewanella amazonensis SB2B guanylate kinase YP_926147.1 305313 R 326297 CDS YP_926148.1 119773408 4602523 306124..307608 1 NC_008700.1 KEGG: son:SO0362 hypothetical protein; hypothetical protein 307608 4602523 Sama_0267 Shewanella amazonensis SB2B hypothetical protein YP_926148.1 306124 D 326297 CDS YP_926149.1 119773409 4602524 307694..308560 1 NC_008700.1 KEGG: son:SO0363 hypothetical protein; hypothetical protein 308560 4602524 Sama_0268 Shewanella amazonensis SB2B hypothetical protein YP_926149.1 307694 D 326297 CDS YP_926150.1 119773410 4602525 308553..309617 1 NC_008700.1 KEGG: son:SO0364 hypothetical protein; hypothetical protein 309617 4602525 Sama_0269 Shewanella amazonensis SB2B hypothetical protein YP_926150.1 308553 D 326297 CDS YP_926151.1 119773411 4602526 309700..310467 1 NC_008700.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 310467 4602526 Sama_0270 Shewanella amazonensis SB2B prolipoprotein diacylglyceryl transferase YP_926151.1 309700 D 326297 CDS YP_926152.1 119773412 4602527 310551..312026 1 NC_008700.1 KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; hypothetical protein 312026 4602527 Sama_0271 Shewanella amazonensis SB2B hypothetical protein YP_926152.1 310551 D 326297 CDS YP_926153.1 119773413 4602528 complement(312099..314450) 1 NC_008700.1 KEGG: vfi:VF1123 hypothetical protein; hypothetical protein 314450 4602528 Sama_0272 Shewanella amazonensis SB2B hypothetical protein YP_926153.1 312099 R 326297 CDS YP_926154.1 119773414 4602529 complement(314648..315343) 1 NC_008700.1 KEGG: son:SO0366 hypothetical protein; hypothetical protein 315343 4602529 Sama_0273 Shewanella amazonensis SB2B hypothetical protein YP_926154.1 314648 R 326297 CDS YP_926155.1 119773415 4602530 complement(315340..316263) 1 NC_008700.1 KEGG: vpa:VPA0175 transcriptional regulator, LysR family; LysR family transcriptional regulator 316263 4602530 Sama_0274 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926155.1 315340 R 326297 CDS YP_926156.1 119773416 4602531 316580..317083 1 NC_008700.1 KEGG: sdn:Sden_2365 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 317083 4602531 Sama_0275 Shewanella amazonensis SB2B glyoxalase/bleomycin resistance protein/dioxygenase YP_926156.1 316580 D 326297 CDS YP_926157.1 119773417 4602532 318764..321673 1 NC_008700.1 KEGG: vvy:VV0561 RNA polymerase sigma factor RpoD; DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein 321673 4602532 Sama_0276 Shewanella amazonensis SB2B DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein YP_926157.1 318764 D 326297 CDS YP_926158.1 119773418 4602533 321736..323187 1 NC_008700.1 KEGG: rfr:Rfer_3071 hypothetical protein; hypothetical protein 323187 4602533 Sama_0277 Shewanella amazonensis SB2B hypothetical protein YP_926158.1 321736 D 326297 CDS YP_926159.1 119773419 4602534 323201..326056 1 NC_008700.1 KEGG: rfr:Rfer_3072 endonuclease; endonuclease 326056 4602534 Sama_0278 Shewanella amazonensis SB2B endonuclease YP_926159.1 323201 D 326297 CDS YP_926160.1 119773420 4602535 326037..327053 1 NC_008700.1 KEGG: rfr:Rfer_3073 hypothetical protein; hypothetical protein 327053 4602535 Sama_0279 Shewanella amazonensis SB2B hypothetical protein YP_926160.1 326037 D 326297 CDS YP_926161.1 119773421 4602536 327046..328854 1 NC_008700.1 KEGG: rfr:Rfer_3074 hypothetical protein; hypothetical protein 328854 4602536 Sama_0280 Shewanella amazonensis SB2B hypothetical protein YP_926161.1 327046 D 326297 CDS YP_926162.1 119773422 4602537 328984..330546 1 NC_008700.1 KEGG: eba:ebA6339 modification methylase (cytosine-specific methyltransferase; modification methylase 330546 4602537 Sama_0281 Shewanella amazonensis SB2B modification methylase YP_926162.1 328984 D 326297 CDS YP_926163.1 119773423 4602538 330536..331021 1 NC_008700.1 KEGG: ret:RHE_PF00110 probable DNA mismatch endonuclease protein; putative DNA mismatch endonuclease protein 331021 4602538 Sama_0282 Shewanella amazonensis SB2B putative DNA mismatch endonuclease protein YP_926163.1 330536 D 326297 CDS YP_926164.1 119773424 4602539 complement(331047..331655) 1 NC_008700.1 KEGG: pha:PSHAa0301 hypothetical protein; hypothetical protein 331655 4602539 Sama_0283 Shewanella amazonensis SB2B hypothetical protein YP_926164.1 331047 R 326297 CDS YP_926165.1 119773425 4602540 331946..333379 1 NC_008700.1 KEGG: noc:Noc_2711 sodium/alanine symporter; sodium/alanine symporter 333379 4602540 Sama_0284 Shewanella amazonensis SB2B sodium/alanine symporter YP_926165.1 331946 D 326297 CDS YP_926166.1 119773426 4602541 333460..334149 1 NC_008700.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 334149 4602541 Sama_0285 Shewanella amazonensis SB2B nucleotidase YP_926166.1 333460 D 326297 CDS YP_926167.1 119773427 4602542 334406..337336 1 NC_008700.1 KEGG: pat:Patl_1940 TonB-dependent receptor; TonB-dependent receptor 337336 4602542 Sama_0286 Shewanella amazonensis SB2B TonB-dependent receptor YP_926167.1 334406 D 326297 CDS YP_926168.1 119773428 4602543 337389..341714 1 NC_008700.1 KEGG: pat:Patl_1941 alpha-1,6-glucosidases, pullulanase-type; alpha-1,6-glucosidase, pullulanase-type 341714 4602543 Sama_0287 Shewanella amazonensis SB2B alpha-1,6-glucosidase, pullulanase-type YP_926168.1 337389 D 326297 CDS YP_926169.1 119773429 4602544 complement(341766..343988) 1 NC_008700.1 KEGG: pat:Patl_0116 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 343988 4602544 Sama_0288 Shewanella amazonensis SB2B putative alpha-1,2-mannosidase YP_926169.1 341766 R 326297 CDS YP_926170.1 119773430 4602545 complement(343985..346240) 1 NC_008700.1 KEGG: pat:Patl_0117 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 346240 4602545 Sama_0289 Shewanella amazonensis SB2B putative alpha-1,2-mannosidase YP_926170.1 343985 R 326297 CDS YP_926171.1 119773431 4602546 complement(346298..347485) 1 NC_008700.1 KEGG: pat:Patl_0118 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 347485 4602546 Sama_0290 Shewanella amazonensis SB2B N-acylglucosamine 2-epimerase YP_926171.1 346298 R 326297 CDS YP_926172.1 119773432 4602547 complement(347482..348495) 1 NC_008700.1 KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; carbohydrate kinase 348495 4602547 Sama_0291 Shewanella amazonensis SB2B carbohydrate kinase YP_926172.1 347482 R 326297 CDS YP_926173.1 119773433 4602548 complement(348492..349661) 1 NC_008700.1 KEGG: pat:Patl_0119 glucose/galactose transporter; glucose/galactose transporter 349661 4602548 Sama_0292 Shewanella amazonensis SB2B glucose/galactose transporter YP_926173.1 348492 R 326297 CDS YP_926174.1 119773434 4602549 complement(349772..352120) 1 NC_008700.1 KEGG: pat:Patl_0120 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 352120 4602549 Sama_0293 Shewanella amazonensis SB2B putative alpha-1,2-mannosidase YP_926174.1 349772 R 326297 CDS YP_926175.1 119773435 4602550 352411..353418 1 NC_008700.1 KEGG: pat:Patl_0121 transcriptional regulator, LacI family; LacI family transcriptional regulator 353418 4602550 Sama_0294 Shewanella amazonensis SB2B LacI family transcriptional regulator YP_926175.1 352411 D 326297 CDS YP_926176.1 119773436 4602551 353746..356640 1 NC_008700.1 KEGG: pat:Patl_0122 TonB-dependent receptor; TonB-dependent receptor 356640 4602551 Sama_0295 Shewanella amazonensis SB2B TonB-dependent receptor YP_926176.1 353746 D 326297 CDS YP_926177.1 119773437 4602552 356690..359554 1 NC_008700.1 KEGG: pat:Patl_0123 coagulation factor 5/8 type-like; coagulation factor 5/8 type protein 359554 4602552 Sama_0296 Shewanella amazonensis SB2B coagulation factor 5/8 type protein YP_926177.1 356690 D 326297 CDS YP_926178.1 119773438 4602553 359770..360816 1 NC_008700.1 KEGG: bth:BT3862 endo-alpha-mannosidase; endo-alpha-mannosidase 360816 4602553 Sama_0297 Shewanella amazonensis SB2B endo-alpha-mannosidase YP_926178.1 359770 D 326297 CDS YP_926179.1 119773439 4602554 360831..361814 1 NC_008700.1 KEGG: pat:Patl_0124 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 361814 4602554 Sama_0298 Shewanella amazonensis SB2B BadF/BadG/BcrA/BcrD type ATPase YP_926179.1 360831 D 326297 CDS YP_926180.1 119773440 4602555 361818..362783 1 NC_008700.1 KEGG: pat:Patl_0125 twin-arginine translocation pathway signal; asparaginase 362783 4602555 Sama_0299 Shewanella amazonensis SB2B asparaginase YP_926180.1 361818 D 326297 CDS YP_926181.1 119773441 4602556 362780..364558 1 NC_008700.1 KEGG: pat:Patl_0126 glycoside hydrolase, family 85; glycoside hydrolase 364558 4602556 Sama_0300 Shewanella amazonensis SB2B glycoside hydrolase YP_926181.1 362780 D 326297 CDS YP_926182.1 119773442 4602557 364555..365352 1 NC_008700.1 KEGG: pat:Patl_0127 CutC; CutC protein 365352 4602557 Sama_0301 Shewanella amazonensis SB2B CutC protein YP_926182.1 364555 D 326297 CDS YP_926183.1 119773443 4602558 365361..367952 1 NC_008700.1 KEGG: pat:Patl_0128 glycoside hydrolase family 2, sugar binding; glycoside hydrolase 367952 4602558 Sama_0302 Shewanella amazonensis SB2B glycoside hydrolase YP_926183.1 365361 D 326297 CDS YP_926184.1 119773444 4602559 367949..369739 1 NC_008700.1 KEGG: pat:Patl_0129 Na+/solute symporter; Na+/solute symporter 369739 4602559 Sama_0303 Shewanella amazonensis SB2B Na+/solute symporter YP_926184.1 367949 D 326297 CDS YP_926185.1 119773445 4602560 369739..372060 1 NC_008700.1 KEGG: pat:Patl_0130 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 372060 4602560 Sama_0304 Shewanella amazonensis SB2B putative alpha-1,2-mannosidase YP_926185.1 369739 D 326297 CDS YP_926186.1 119773446 4602561 373058..373450 1 NC_008700.1 KEGG: pha:PSHAa2108 hypothetical protein; hypothetical protein 373450 4602561 Sama_0305 Shewanella amazonensis SB2B hypothetical protein YP_926186.1 373058 D 326297 CDS YP_926187.1 119773447 4602562 373545..373943 1 NC_008700.1 KEGG: pha:PSHAa2108 hypothetical protein; hypothetical protein 373943 4602562 Sama_0306 Shewanella amazonensis SB2B hypothetical protein YP_926187.1 373545 D 326297 CDS YP_926188.1 119773448 4602563 374308..374574 1 NC_008700.1 hypothetical protein 374574 4602563 Sama_0307 Shewanella amazonensis SB2B hypothetical protein YP_926188.1 374308 D 326297 CDS YP_926189.1 119773449 4602564 complement(374607..375368) 1 NC_008700.1 KEGG: hch:HCH_00937 predicted phosphoesterases, related to the Icc protein; phosphoesterase, related to the Icc protein 375368 4602564 Sama_0308 Shewanella amazonensis SB2B phosphoesterase, related to the Icc protein YP_926189.1 374607 R 326297 CDS YP_926190.1 119773450 4602565 complement(375449..375751) 1 NC_008700.1 KEGG: rfe:RF_0935 hypothetical protein; hypothetical protein 375751 4602565 Sama_0309 Shewanella amazonensis SB2B hypothetical protein YP_926190.1 375449 R 326297 CDS YP_926191.1 119773451 4602566 complement(375859..376374) 1 NC_008700.1 KEGG: ana:all3160 hypothetical protein; hypothetical protein 376374 4602566 Sama_0310 Shewanella amazonensis SB2B hypothetical protein YP_926191.1 375859 R 326297 CDS YP_926192.1 119773452 4602567 complement(376741..377334) 1 NC_008700.1 KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein 377334 4602567 Sama_0311 Shewanella amazonensis SB2B hypothetical protein YP_926192.1 376741 R 326297 CDS YP_926193.1 119773453 4602568 complement(377512..378216) 1 NC_008700.1 KEGG: ddi:DDB0204614 hypothetical protein; hypothetical protein 378216 4602568 Sama_0312 Shewanella amazonensis SB2B hypothetical protein YP_926193.1 377512 R 326297 CDS YP_926194.1 119773454 4602569 complement(378604..379386) 1 NC_008700.1 KEGG: noc:Noc_0649 DNA topoisomerase I; DNA topoisomerase I 379386 4602569 Sama_0313 Shewanella amazonensis SB2B DNA topoisomerase I YP_926194.1 378604 R 326297 CDS YP_926195.1 119773455 4602570 complement(379556..379834) 1 NC_008700.1 hypothetical protein 379834 4602570 Sama_0314 Shewanella amazonensis SB2B hypothetical protein YP_926195.1 379556 R 326297 CDS YP_926196.1 119773456 4602571 complement(380381..380974) 1 NC_008700.1 KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein 380974 4602571 Sama_0315 Shewanella amazonensis SB2B hypothetical protein YP_926196.1 380381 R 326297 CDS YP_926197.1 119773457 4602572 complement(381108..381935) 1 NC_008700.1 KEGG: nha:Nham_0324 hypothetical protein; hypothetical protein 381935 4602572 Sama_0316 Shewanella amazonensis SB2B hypothetical protein YP_926197.1 381108 R 326297 CDS YP_926198.1 119773458 4602573 complement(383200..384138) 1 NC_008700.1 KEGG: pha:PSHAa2104 hypothetical protein; hypothetical protein 384138 4602573 Sama_0317 Shewanella amazonensis SB2B hypothetical protein YP_926198.1 383200 R 326297 CDS YP_926199.1 119773459 4602574 complement(384813..386360) 1 NC_008700.1 KEGG: sdn:Sden_0317 phage integrase; hypothetical protein 386360 4602574 Sama_0318 Shewanella amazonensis SB2B hypothetical protein YP_926199.1 384813 R 326297 CDS YP_926200.1 119773460 4602575 complement(386521..387450) 1 NC_008700.1 KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein 387450 4602575 Sama_0319 Shewanella amazonensis SB2B hypothetical protein YP_926200.1 386521 R 326297 CDS YP_926201.1 119773461 4602576 387592..388305 1 NC_008700.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 388305 rph 4602576 rph Shewanella amazonensis SB2B ribonuclease PH YP_926201.1 387592 D 326297 CDS YP_926202.1 119773462 4602577 388412..389053 1 NC_008700.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 389053 pyrE 4602577 pyrE Shewanella amazonensis SB2B orotate phosphoribosyltransferase YP_926202.1 388412 D 326297 CDS YP_926203.1 119773463 4602578 complement(389155..389805) 1 NC_008700.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 389805 folE 4602578 folE Shewanella amazonensis SB2B GTP cyclohydrolase I YP_926203.1 389155 R 326297 CDS YP_926204.1 119773464 4602579 complement(389988..391937) 1 NC_008700.1 KEGG: son:SO4252 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 391937 4602579 Sama_0323 Shewanella amazonensis SB2B prolyl oligopeptidase family protein YP_926204.1 389988 R 326297 CDS YP_926205.1 119773465 4602580 complement(392054..392647) 1 NC_008700.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 392647 slmA 4602580 slmA Shewanella amazonensis SB2B nucleoid occlusion protein YP_926205.1 392054 R 326297 CDS YP_926206.1 119773466 4602581 complement(392676..393134) 1 NC_008700.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 393134 dut 4602581 dut Shewanella amazonensis SB2B deoxyuridine 5'-triphosphate nucleotidohydrolase YP_926206.1 392676 R 326297 CDS YP_926207.1 119773467 4602582 complement(393131..394384) 1 NC_008700.1 KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase 394384 4602582 Sama_0326 Shewanella amazonensis SB2B phosphopantothenoylcysteine decarboxylase YP_926207.1 393131 R 326297 CDS YP_926208.1 119773468 4602583 394468..395145 1 NC_008700.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 395145 radC 4602583 radC Shewanella amazonensis SB2B DNA repair protein RadC YP_926208.1 394468 D 326297 CDS YP_926209.1 119773469 4602584 395265..395501 1 NC_008700.1 required for 70S ribosome assembly; 50S ribosomal protein L28 395501 rpmB 4602584 rpmB Shewanella amazonensis SB2B 50S ribosomal protein L28 YP_926209.1 395265 D 326297 CDS YP_926210.1 119773470 4602585 395508..395681 1 NC_008700.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 395681 rpmG 4602585 rpmG Shewanella amazonensis SB2B 50S ribosomal protein L33 YP_926210.1 395508 D 326297 CDS YP_926211.1 119773471 4602586 395962..397284 1 NC_008700.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 397284 4602586 Sama_0330 Shewanella amazonensis SB2B N-acetylglutamate synthase YP_926211.1 395962 D 326297 CDS YP_926212.1 119773472 4602587 397426..397959 1 NC_008700.1 KEGG: son:SO4244 hypothetical protein; hypothetical protein 397959 4602587 Sama_0331 Shewanella amazonensis SB2B hypothetical protein YP_926212.1 397426 D 326297 CDS YP_926213.1 119773473 4602588 complement(398114..398995) 1 NC_008700.1 KEGG: son:SO4243 rarD protein; rarD protein 398995 4602588 Sama_0332 Shewanella amazonensis SB2B rarD protein YP_926213.1 398114 R 326297 CDS YP_926214.1 119773474 4602589 399235..401058 1 NC_008700.1 KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 401058 4602589 Sama_0333 Shewanella amazonensis SB2B ATP-dependent DNA helicase RecQ YP_926214.1 399235 D 326297 CDS YP_926215.1 119773475 4602590 complement(401045..402787) 1 NC_008700.1 KEGG: sdn:Sden_0333 tetratricopeptide TPR_2; hypothetical protein 402787 4602590 Sama_0334 Shewanella amazonensis SB2B hypothetical protein YP_926215.1 401045 R 326297 CDS YP_926216.1 119773476 4602591 403271..404839 1 NC_008700.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 404839 4602591 Sama_0335 Shewanella amazonensis SB2B 2-isopropylmalate synthase YP_926216.1 403271 D 326297 CDS YP_926217.1 119773477 4602592 404914..406008 1 NC_008700.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 406008 4602592 Sama_0336 Shewanella amazonensis SB2B 3-isopropylmalate dehydrogenase YP_926217.1 404914 D 326297 CDS YP_926218.1 119773478 4602593 406008..407420 1 NC_008700.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 407420 4602593 Sama_0337 Shewanella amazonensis SB2B isopropylmalate isomerase large subunit YP_926218.1 406008 D 326297 CDS YP_926219.1 119773479 4602594 407423..408028 1 NC_008700.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 408028 leuD 4602594 leuD Shewanella amazonensis SB2B isopropylmalate isomerase small subunit YP_926219.1 407423 D 326297 CDS YP_926220.1 119773480 4602595 408539..409897 1 NC_008700.1 KEGG: sdn:Sden_0340 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 409897 4602595 Sama_0339 Shewanella amazonensis SB2B aromatic hydrocarbon degradation membrane protein YP_926220.1 408539 D 326297 CDS YP_926221.1 119773481 4602596 410025..410489 1 NC_008700.1 KEGG: sdn:Sden_0341 hypothetical protein; hypothetical protein 410489 4602596 Sama_0340 Shewanella amazonensis SB2B hypothetical protein YP_926221.1 410025 D 326297 CDS YP_926222.1 119773482 4602597 410502..411989 1 NC_008700.1 KEGG: son:SO4230 glycerol kinase; glycerol kinase 411989 4602597 Sama_0341 Shewanella amazonensis SB2B glycerol kinase YP_926222.1 410502 D 326297 CDS YP_926223.1 119773483 4602598 complement(412014..412310) 1 NC_008700.1 KEGG: son:SO4229 hypothetical protein; hypothetical protein 412310 4602598 Sama_0342 Shewanella amazonensis SB2B hypothetical protein YP_926223.1 412014 R 326297 CDS YP_926224.1 119773484 4602599 complement(412338..413378) 1 NC_008700.1 KEGG: sdn:Sden_0344 ferredoxin; ferredoxin 413378 4602599 Sama_0343 Shewanella amazonensis SB2B ferredoxin YP_926224.1 412338 R 326297 CDS YP_926225.1 119773485 4602600 complement(413375..414091) 1 NC_008700.1 KEGG: sdn:Sden_0345 PepSY-associated TM helix; PepSY-associated TM helix family protein 414091 4602600 Sama_0344 Shewanella amazonensis SB2B PepSY-associated TM helix family protein YP_926225.1 413375 R 326297 CDS YP_926226.1 119773486 4602601 414446..414904 1 NC_008700.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 414904 4602601 Sama_0345 Shewanella amazonensis SB2B cell division protein MraZ YP_926226.1 414446 D 326297 CDS YP_926227.1 119773487 4602602 414936..415877 1 NC_008700.1 KEGG: sdn:Sden_0347 methyltransferase; S-adenosyl-methyltransferase MraW 415877 mraW 4602602 mraW Shewanella amazonensis SB2B S-adenosyl-methyltransferase MraW YP_926227.1 414936 D 326297 CDS YP_926228.1 119773488 4602603 415888..416199 1 NC_008700.1 KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL 416199 4602603 Sama_0347 Shewanella amazonensis SB2B cell division protein FtsL YP_926228.1 415888 D 326297 CDS YP_926229.1 119773489 4602604 416196..417932 1 NC_008700.1 KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 417932 4602604 Sama_0348 Shewanella amazonensis SB2B peptidoglycan glycosyltransferase YP_926229.1 416196 D 326297 CDS YP_926230.1 119773490 4602605 417929..419392 1 NC_008700.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 419392 murE 4602605 murE Shewanella amazonensis SB2B UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_926230.1 417929 D 326297 CDS YP_926231.1 119773491 4602606 419389..420756 1 NC_008700.1 KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 420756 4602606 Sama_0350 Shewanella amazonensis SB2B UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_926231.1 419389 D 326297 CDS YP_926232.1 119773492 4602607 420757..421839 1 NC_008700.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 421839 mraY 4602607 mraY Shewanella amazonensis SB2B phospho-N-acetylmuramoyl-pentapeptide- transferase YP_926232.1 420757 D 326297 CDS YP_926233.1 119773493 4602608 421842..423173 1 NC_008700.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 423173 murD 4602608 murD Shewanella amazonensis SB2B UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_926233.1 421842 D 326297 CDS YP_926234.1 119773494 4602609 423163..424371 1 NC_008700.1 KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 424371 4602609 Sama_0353 Shewanella amazonensis SB2B cell division protein FtsW YP_926234.1 423163 D 326297 CDS YP_926235.1 119773495 4602610 424372..425454 1 NC_008700.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 425454 murG 4602610 murG Shewanella amazonensis SB2B undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_926235.1 424372 D 326297 CDS YP_926236.1 119773496 4602611 425464..426918 1 NC_008700.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 426918 murC 4602611 murC Shewanella amazonensis SB2B UDP-N-acetylmuramate--L-alanine ligase YP_926236.1 425464 D 326297 CDS YP_926237.1 119773497 4602612 427031..427855 1 NC_008700.1 KEGG: sdn:Sden_0357 cell division protein FtsQ; cell division protein FtsQ 427855 4602612 Sama_0356 Shewanella amazonensis SB2B cell division protein FtsQ YP_926237.1 427031 D 326297 CDS YP_926238.1 119773498 4602613 427859..429094 1 NC_008700.1 KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA 429094 4602613 Sama_0357 Shewanella amazonensis SB2B cell division protein FtsA YP_926238.1 427859 D 326297 CDS YP_926239.1 119773499 4602614 429123..430307 1 NC_008700.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 430307 4602614 Sama_0358 Shewanella amazonensis SB2B cell division protein FtsZ YP_926239.1 429123 D 326297 CDS YP_926240.1 119773500 4602615 430462..431382 1 NC_008700.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 431382 lpxC 4602615 lpxC Shewanella amazonensis SB2B UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_926240.1 430462 D 326297 CDS YP_926241.1 119773501 4602616 complement(431399..431851) 1 NC_008700.1 KEGG: sdn:Sden_0361 hypothetical protein; hypothetical protein 431851 4602616 Sama_0360 Shewanella amazonensis SB2B hypothetical protein YP_926241.1 431399 R 326297 CDS YP_926242.1 119773502 4602617 431879..432778 1 NC_008700.1 KEGG: sdn:Sden_0362 peptidase M23B; peptidase M23B 432778 4602617 Sama_0361 Shewanella amazonensis SB2B peptidase M23B YP_926242.1 431879 D 326297 CDS YP_926243.1 119773503 4602618 432836..435562 1 NC_008700.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 435562 4602618 Sama_0362 Shewanella amazonensis SB2B preprotein translocase subunit SecA YP_926243.1 432836 D 326297 CDS YP_926244.1 119773504 4605931 complement(441876..442271) 1 NC_008700.1 KEGG: sdn:Sden_3395 mutator MutT protein; mutator MutT protein 442271 4605931 Sama_0363 Shewanella amazonensis SB2B mutator MutT protein YP_926244.1 441876 R 326297 CDS YP_926245.1 119773505 4602620 complement(442313..442528) 1 NC_008700.1 KEGG: son:SO0411 hypothetical protein; hypothetical protein 442528 4602620 Sama_0364 Shewanella amazonensis SB2B hypothetical protein YP_926245.1 442313 R 326297 CDS YP_926246.1 119773506 4602621 complement(442590..443324) 1 NC_008700.1 KEGG: son:SO0412 hypothetical protein; hypothetical protein 443324 4602621 Sama_0365 Shewanella amazonensis SB2B hypothetical protein YP_926246.1 442590 R 326297 CDS YP_926247.1 119773507 4602622 complement(443317..443934) 1 NC_008700.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 443934 coaE 4602622 coaE Shewanella amazonensis SB2B dephospho-CoA kinase YP_926247.1 443317 R 326297 CDS YP_926248.1 119773508 4602623 complement(443934..444848) 1 NC_008700.1 KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase 444848 4602623 Sama_0367 Shewanella amazonensis SB2B prepilin peptidase YP_926248.1 443934 R 326297 CDS YP_926249.1 119773509 4602624 complement(444884..446143) 1 NC_008700.1 KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type IV pilus biogenesis protein PilC 446143 4602624 Sama_0368 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilC YP_926249.1 444884 R 326297 CDS YP_926250.1 119773510 4602625 complement(446213..447919) 1 NC_008700.1 KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV pilus biogenesis protein PilB 447919 4602625 Sama_0369 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilB YP_926250.1 446213 R 326297 CDS YP_926251.1 119773511 4602626 complement(447973..448446) 1 NC_008700.1 KEGG: pat:Patl_3344 prepilin-type cleavage/methylation; prepilin-type cleavage/methylation protein 448446 4602626 Sama_0370 Shewanella amazonensis SB2B prepilin-type cleavage/methylation protein YP_926251.1 447973 R 326297 CDS YP_926252.1 119773512 4602627 complement(450088..450945) 1 NC_008700.1 KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide diphosphorylase 450945 4602627 Sama_0371 Shewanella amazonensis SB2B nicotinate-nucleotide diphosphorylase YP_926252.1 450088 R 326297 CDS YP_926253.1 119773513 4602628 451281..451853 1 NC_008700.1 KEGG: sdn:Sden_3386 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 451853 4602628 Sama_0372 Shewanella amazonensis SB2B N-acetyl-anhydromuranmyl-L-alanine amidase YP_926253.1 451281 D 326297 CDS YP_926254.1 119773514 4602629 451931..452791 1 NC_008700.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 452791 4602629 Sama_0373 Shewanella amazonensis SB2B regulatory protein AmpE YP_926254.1 451931 D 326297 CDS YP_926255.1 119773515 4602630 452998..453750 1 NC_008700.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 453750 pdhR 4602630 pdhR Shewanella amazonensis SB2B transcriptional regulator PdhR YP_926255.1 452998 D 326297 CDS YP_926256.1 119773516 4602631 453823..456519 1 NC_008700.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 456519 aceE 4602631 aceE Shewanella amazonensis SB2B pyruvate dehydrogenase subunit E1 YP_926256.1 453823 D 326297 CDS YP_926257.1 119773517 4602632 456531..458459 1 NC_008700.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 458459 aceF 4602632 aceF Shewanella amazonensis SB2B dihydrolipoamide acetyltransferase YP_926257.1 456531 D 326297 CDS YP_926258.1 119773518 4602633 458630..460060 1 NC_008700.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 460060 4602633 Sama_0377 Shewanella amazonensis SB2B dihydrolipoamide dehydrogenase YP_926258.1 458630 D 326297 CDS YP_926259.1 119773519 4602634 460211..464686 1 NC_008700.1 KEGG: son:SO0427 sensory box protein; sensory box protein 464686 4602634 Sama_0378 Shewanella amazonensis SB2B sensory box protein YP_926259.1 460211 D 326297 CDS YP_926260.1 119773520 4602635 464790..466994 1 NC_008700.1 KEGG: son:SO0428 hypothetical protein; hypothetical protein 466994 4602635 Sama_0379 Shewanella amazonensis SB2B hypothetical protein YP_926260.1 464790 D 326297 CDS YP_926261.1 119773521 4602636 467111..469171 1 NC_008700.1 KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 469171 4602636 Sama_0380 Shewanella amazonensis SB2B endothelin-converting protein 1 YP_926261.1 467111 D 326297 CDS YP_926262.1 119773522 4602637 complement(469245..469910) 1 NC_008700.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 469910 4602637 Sama_0381 Shewanella amazonensis SB2B 2-deoxyglucose-6-phosphatase YP_926262.1 469245 R 326297 CDS YP_926263.1 119773523 4602638 470282..472879 1 NC_008700.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 472879 4602638 Sama_0382 Shewanella amazonensis SB2B bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_926263.1 470282 D 326297 CDS YP_926264.1 119773524 4602639 complement(474348..475742) 1 NC_008700.1 KEGG: vch:VC1407 ATP-dependent RNA helicase RhlE; ATP-dependent RNA helicase RhlE 475742 4602639 Sama_0383 Shewanella amazonensis SB2B ATP-dependent RNA helicase RhlE YP_926264.1 474348 R 326297 CDS YP_926265.1 119773525 4602640 complement(476412..477074) 1 NC_008700.1 KEGG: sdn:Sden_0778 hypothetical protein; hypothetical protein 477074 4602640 Sama_0384 Shewanella amazonensis SB2B hypothetical protein YP_926265.1 476412 R 326297 CDS YP_926266.1 119773526 4602641 complement(477268..477888) 1 NC_008700.1 KEGG: rfr:Rfer_3267 glutathione S-transferase-like; glutathione S-transferase-like protein 477888 4602641 Sama_0385 Shewanella amazonensis SB2B glutathione S-transferase-like protein YP_926266.1 477268 R 326297 CDS YP_926267.1 119773527 4602642 complement(478075..478539) 1 NC_008700.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 478539 4602642 Sama_0386 Shewanella amazonensis SB2B anti-RNA polymerase sigma 70 factor YP_926267.1 478075 R 326297 CDS YP_926268.1 119773528 4602643 478996..480060 1 NC_008700.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 480060 hemE 4602643 hemE Shewanella amazonensis SB2B uroporphyrinogen decarboxylase YP_926268.1 478996 D 326297 CDS YP_926269.1 119773529 4602644 480564..483077 1 NC_008700.1 KEGG: son:SO0437 sensory box protein; putative diguanylate phosphodiesterase 483077 4602644 Sama_0388 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_926269.1 480564 D 326297 CDS YP_926270.1 119773530 4602645 483150..483962 1 NC_008700.1 KEGG: son:SO0438 short chain dehydrogenase; short chain dehydrogenase 483962 4602645 Sama_0389 Shewanella amazonensis SB2B short chain dehydrogenase YP_926270.1 483150 D 326297 CDS YP_926271.1 119773531 4602646 complement(484031..484270) 1 NC_008700.1 KEGG: son:SO0440 hypothetical protein; hypothetical protein 484270 4602646 Sama_0390 Shewanella amazonensis SB2B hypothetical protein YP_926271.1 484031 R 326297 CDS YP_926272.1 119773532 4602647 484927..485916 1 NC_008700.1 hypothetical protein 485916 4602647 Sama_0391 Shewanella amazonensis SB2B hypothetical protein YP_926272.1 484927 D 326297 CDS YP_926273.1 119773533 4606034 complement(486460..489684) 1 NC_008700.1 KEGG: son:SO0440 hypothetical protein; hypothetical protein 489684 4606034 Sama_0393 Shewanella amazonensis SB2B hypothetical protein YP_926273.1 486460 R 326297 CDS YP_926274.1 119773534 4602649 complement(489862..491157) 1 NC_008700.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 491157 4602649 Sama_0394 Shewanella amazonensis SB2B phosphoribosylamine--glycine ligase YP_926274.1 489862 R 326297 CDS YP_926275.1 119773535 4602650 complement(491215..492804) 1 NC_008700.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 492804 purH 4602650 purH Shewanella amazonensis SB2B bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_926275.1 491215 R 326297 CDS YP_926276.1 119773536 4602651 493097..493630 1 NC_008700.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 493630 zntR 4602651 zntR Shewanella amazonensis SB2B zinc-responsive transcriptional regulator YP_926276.1 493097 D 326297 CDS YP_926277.1 119773537 4602652 493621..495093 1 NC_008700.1 KEGG: son:SO0444 hypothetical protein; hypothetical protein 495093 4602652 Sama_0397 Shewanella amazonensis SB2B hypothetical protein YP_926277.1 493621 D 326297 CDS YP_926278.1 119773538 4602653 495289..497262 1 NC_008700.1 KEGG: pha:PSHAa1953 peptidase; peptidase 497262 4602653 Sama_0398 Shewanella amazonensis SB2B peptidase YP_926278.1 495289 D 326297 CDS YP_926279.1 119773539 4602654 497294..497620 1 NC_008700.1 hypothetical protein 497620 4602654 Sama_0399 Shewanella amazonensis SB2B hypothetical protein YP_926279.1 497294 D 326297 CDS YP_926280.1 119773540 4602655 complement(497645..498667) 1 NC_008700.1 KEGG: vpa:VP0375 putative lipoprotein; putative lipoprotein 498667 4602655 Sama_0400 Shewanella amazonensis SB2B putative lipoprotein YP_926280.1 497645 R 326297 CDS YP_926281.1 119773541 4602656 complement(498804..499745) 1 NC_008700.1 KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator 499745 4602656 Sama_0401 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926281.1 498804 R 326297 CDS YP_926282.1 119773542 4602657 499845..500891 1 NC_008700.1 KEGG: son:SO0524 HlyD family secretion protein; HlyD family secretion protein 500891 4602657 Sama_0402 Shewanella amazonensis SB2B HlyD family secretion protein YP_926282.1 499845 D 326297 CDS YP_926283.1 119773543 4602658 500902..502491 1 NC_008700.1 KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA subfamily drug resistance transporter 502491 4602658 Sama_0403 Shewanella amazonensis SB2B EmrB/QacA subfamily drug resistance transporter YP_926283.1 500902 D 326297 CDS YP_926284.1 119773544 4602659 502603..503061 1 NC_008700.1 KEGG: son:SO0526 acetyltransferase, GNAT family; acetyltransferase 503061 4602659 Sama_0404 Shewanella amazonensis SB2B acetyltransferase YP_926284.1 502603 D 326297 CDS YP_926285.1 119773545 4602660 503066..503383 1 NC_008700.1 KEGG: son:SO0527 hypothetical protein; hypothetical protein 503383 4602660 Sama_0405 Shewanella amazonensis SB2B hypothetical protein YP_926285.1 503066 D 326297 CDS YP_926286.1 119773546 4602661 complement(503482..503736) 1 NC_008700.1 KEGG: cps:CPS_4118 hypothetical protein; hypothetical protein 503736 4602661 Sama_0406 Shewanella amazonensis SB2B hypothetical protein YP_926286.1 503482 R 326297 CDS YP_926287.1 119773547 4602662 503863..504747 1 NC_008700.1 KEGG: son:SO0528 hypothetical protein; hypothetical protein 504747 4602662 Sama_0407 Shewanella amazonensis SB2B hypothetical protein YP_926287.1 503863 D 326297 CDS YP_926288.1 119773548 4602663 complement(504775..505623) 1 NC_008700.1 KEGG: pca:Pcar_0306 hypothetical protein; hypothetical protein 505623 4602663 Sama_0408 Shewanella amazonensis SB2B hypothetical protein YP_926288.1 504775 R 326297 CDS YP_926289.1 119773549 4602664 complement(505765..506538) 1 NC_008700.1 KEGG: yps:YPTB3403 hypothetical protein; hypothetical protein 506538 4602664 Sama_0409 Shewanella amazonensis SB2B hypothetical protein YP_926289.1 505765 R 326297 CDS YP_926290.1 119773550 4602665 506845..508020 1 NC_008700.1 KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; ornithine decarboxylase 508020 4602665 Sama_0410 Shewanella amazonensis SB2B ornithine decarboxylase YP_926290.1 506845 D 326297 CDS YP_926291.1 119773551 4602666 complement(508106..508321) 1 NC_008700.1 KEGG: son:SO4134 hypothetical protein; hypothetical protein 508321 4602666 Sama_0411 Shewanella amazonensis SB2B hypothetical protein YP_926291.1 508106 R 326297 CDS YP_926292.1 119773552 4602667 508759..509517 1 NC_008700.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 509517 4602667 Sama_0412 Shewanella amazonensis SB2B uridine phosphorylase YP_926292.1 508759 D 326297 CDS YP_926293.1 119773553 4602668 complement(509575..510327) 1 NC_008700.1 KEGG: son:SO4131 hypothetical protein; hypothetical protein 510327 4602668 Sama_0413 Shewanella amazonensis SB2B hypothetical protein YP_926293.1 509575 R 326297 CDS YP_926294.1 119773554 4602669 510724..511191 1 NC_008700.1 KEGG: sdn:Sden_3072 protein of unknown function DUF107; hypothetical protein 511191 4602669 Sama_0414 Shewanella amazonensis SB2B hypothetical protein YP_926294.1 510724 D 326297 CDS YP_926295.1 119773555 4602670 511210..512124 1 NC_008700.1 KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 512124 4602670 Sama_0415 Shewanella amazonensis SB2B hypothetical protein YP_926295.1 511210 D 326297 CDS YP_926296.1 119773556 4602671 512137..513069 1 NC_008700.1 KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 513069 4602671 Sama_0416 Shewanella amazonensis SB2B hypothetical protein YP_926296.1 512137 D 326297 CDS YP_926297.1 119773557 4602672 513399..514343 1 NC_008700.1 KEGG: mes:Meso_0624 homocysteine S-methyltransferase; homocysteine S-methyltransferase 514343 4602672 Sama_0417 Shewanella amazonensis SB2B homocysteine S-methyltransferase YP_926297.1 513399 D 326297 CDS YP_926298.1 119773558 4602673 complement(514689..515582) 1 NC_008700.1 KEGG: bja:blr0877 two-component response regulator; putative transcriptional regulator CadC 515582 4602673 Sama_0418 Shewanella amazonensis SB2B putative transcriptional regulator CadC YP_926298.1 514689 R 326297 CDS YP_926299.1 119773559 4602674 515732..517897 1 NC_008700.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 517897 uvrD 4602674 uvrD Shewanella amazonensis SB2B DNA-dependent helicase II YP_926299.1 515732 D 326297 CDS YP_926300.1 119773560 4602675 517977..518849 1 NC_008700.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 518849 ubiA 4602675 ubiA Shewanella amazonensis SB2B 4-hydroxybenzoate octaprenyltransferase YP_926300.1 517977 D 326297 CDS YP_926301.1 119773561 4602676 complement(518800..519885) 1 NC_008700.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 519885 4602676 Sama_0421 Shewanella amazonensis SB2B TMAO reductase system periplasmic protein TorT YP_926301.1 518800 R 326297 CDS YP_926302.1 119773562 4602677 complement(519998..520576) 1 NC_008700.1 KEGG: son:SO0474 hypothetical protein; hypothetical protein 520576 4602677 Sama_0422 Shewanella amazonensis SB2B hypothetical protein YP_926302.1 519998 R 326297 CDS YP_926303.1 119773563 4602678 520672..520962 1 NC_008700.1 KEGG: xcv:XCV4020 putative mitomycin resistance protein; putative mitomycin resistance protein 520962 4602678 Sama_0423 Shewanella amazonensis SB2B putative mitomycin resistance protein YP_926303.1 520672 D 326297 CDS YP_926304.1 119773564 4602679 complement(520976..521746) 1 NC_008700.1 KEGG: vvy:VV1499 hypothetical protein; hypothetical protein 521746 4602679 Sama_0424 Shewanella amazonensis SB2B hypothetical protein YP_926304.1 520976 R 326297 CDS YP_926305.1 119773565 4602680 complement(521851..522549) 1 NC_008700.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 522549 fre 4602680 fre Shewanella amazonensis SB2B FMN reductase YP_926305.1 521851 R 326297 CDS YP_926306.1 119773566 4602681 complement(522664..524145) 1 NC_008700.1 KEGG: sdn:Sden_3059 carboxylyase-related protein; carboxylyase-like protein 524145 4602681 Sama_0426 Shewanella amazonensis SB2B carboxylyase-like protein YP_926306.1 522664 R 326297 CDS YP_926307.1 119773567 4602682 524243..524767 1 NC_008700.1 KEGG: son:SO0508 hypothetical protein; hypothetical protein 524767 4602682 Sama_0427 Shewanella amazonensis SB2B hypothetical protein YP_926307.1 524243 D 326297 CDS YP_926308.1 119773568 4602683 complement(524819..527146) 1 NC_008700.1 KEGG: sdn:Sden_3015 peptidase M4, thermolysin; peptidase M4, thermolysin 527146 4602683 Sama_0428 Shewanella amazonensis SB2B peptidase M4, thermolysin YP_926308.1 524819 R 326297 CDS YP_926309.1 119773569 4602684 complement(527429..527809) 1 NC_008700.1 KEGG: son:SO4164 hypothetical protein; hypothetical protein 527809 4602684 Sama_0429 Shewanella amazonensis SB2B hypothetical protein YP_926309.1 527429 R 326297 CDS YP_926310.1 119773570 4602685 527928..531152 1 NC_008700.1 KEGG: son:SO1699 transcriptional regulator; putative transcriptional regulator CadC 531152 4602685 Sama_0430 Shewanella amazonensis SB2B putative transcriptional regulator CadC YP_926310.1 527928 D 326297 CDS YP_926311.1 119773571 4602686 531285..531632 1 NC_008700.1 KEGG: son:SO1698 hypothetical protein; hypothetical protein 531632 4602686 Sama_0431 Shewanella amazonensis SB2B hypothetical protein YP_926311.1 531285 D 326297 CDS YP_926312.1 119773572 4602687 531879..532790 1 NC_008700.1 KEGG: son:SO1695 sensory box/GGDEF family protein; response regulator receiver protein 532790 4602687 Sama_0432 Shewanella amazonensis SB2B response regulator receiver protein YP_926312.1 531879 D 326297 CDS YP_926313.1 119773573 4602688 532806..533057 1 NC_008700.1 hypothetical protein 533057 4602688 Sama_0433 Shewanella amazonensis SB2B hypothetical protein YP_926313.1 532806 D 326297 CDS YP_926314.1 119773574 4602689 complement(533075..534367) 1 NC_008700.1 KEGG: pha:PSHAb0513 putative secreted hydrolase; putative secreted hydrolase 534367 4602689 Sama_0434 Shewanella amazonensis SB2B putative secreted hydrolase YP_926314.1 533075 R 326297 CDS YP_926315.1 119773575 4602690 complement(534501..535082) 1 NC_008700.1 KEGG: vpa:VP1371 putative phosphoglycerate mutase family protein; putative phosphoglycerate mutase family protein 535082 4602690 Sama_0435 Shewanella amazonensis SB2B putative phosphoglycerate mutase family protein YP_926315.1 534501 R 326297 CDS YP_926316.1 119773576 4602691 535310..535879 1 NC_008700.1 KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein 535879 4602691 Sama_0436 Shewanella amazonensis SB2B putative lipoprotein YP_926316.1 535310 D 326297 CDS YP_926317.1 119773577 4602692 535989..536702 1 NC_008700.1 KEGG: pae:PA1157 probable two-component response regulator; response regulator receiver protein 536702 4602692 Sama_0437 Shewanella amazonensis SB2B response regulator receiver protein YP_926317.1 535989 D 326297 CDS YP_926318.1 119773578 4602693 536704..538971 1 NC_008700.1 KEGG: pha:PSHAa0111 hypothetical protein; signal transduction histidine kinase-like protein 538971 4602693 Sama_0438 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926318.1 536704 D 326297 CDS YP_926319.1 119773579 4602694 539199..542654 1 NC_008700.1 KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; subtilisin-like serine protease-like protein 542654 4602694 Sama_0439 Shewanella amazonensis SB2B subtilisin-like serine protease-like protein YP_926319.1 539199 D 326297 CDS YP_926320.1 119773580 4602695 complement(542817..544142) 1 NC_008700.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 544142 hslU 4602695 hslU Shewanella amazonensis SB2B ATP-dependent protease ATP-binding subunit HslU YP_926320.1 542817 R 326297 CDS YP_926321.1 119773581 4602696 complement(544152..544676) 1 NC_008700.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 544676 4602696 Sama_0441 Shewanella amazonensis SB2B ATP-dependent protease peptidase subunit YP_926321.1 544152 R 326297 CDS YP_926322.1 119773582 4602697 complement(544882..545439) 1 NC_008700.1 KEGG: sdn:Sden_3358 sporulation related; sporulation-like protein 545439 4602697 Sama_0442 Shewanella amazonensis SB2B sporulation-like protein YP_926322.1 544882 R 326297 CDS YP_926323.1 119773583 4602698 complement(545443..547188) 1 NC_008700.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 547188 argS 4602698 argS Shewanella amazonensis SB2B arginyl-tRNA synthetase YP_926323.1 545443 R 326297 CDS YP_926324.1 119773584 4602699 complement(547676..549523) 1 NC_008700.1 KEGG: vvu:VV21346 autotransporter adhesin; hypothetical protein 549523 4602699 Sama_0444 Shewanella amazonensis SB2B hypothetical protein YP_926324.1 547676 R 326297 CDS YP_926325.1 119773585 4602700 complement(549686..551893) 1 NC_008700.1 KEGG: she:Shewmr4_3495 primosomal protein N'; primosomal protein N' 551893 4602700 Sama_0445 Shewanella amazonensis SB2B primosomal protein N' YP_926325.1 549686 R 326297 CDS YP_926326.1 119773586 4602701 552004..552729 1 NC_008700.1 KEGG: sdn:Sden_3355 hypothetical protein; hypothetical protein 552729 4602701 Sama_0446 Shewanella amazonensis SB2B hypothetical protein YP_926326.1 552004 D 326297 CDS YP_926327.1 119773587 4602702 552877..553089 1 NC_008700.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 553089 rpmE 4602702 rpmE Shewanella amazonensis SB2B 50S ribosomal protein L31 YP_926327.1 552877 D 326297 CDS YP_926328.1 119773588 4602703 553592..554839 1 NC_008700.1 KEGG: sdn:Sden_3353 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); malate dehydrogenase 554839 4602703 Sama_0448 Shewanella amazonensis SB2B malate dehydrogenase YP_926328.1 553592 D 326297 CDS YP_926329.1 119773589 4602704 554989..556896 1 NC_008700.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 556896 4602704 Sama_0449 Shewanella amazonensis SB2B regulatory protein CsrD YP_926329.1 554989 D 326297 CDS YP_926330.1 119773590 4602705 557067..557936 1 NC_008700.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 557936 4602705 Sama_0450 Shewanella amazonensis SB2B biogenesis protein MshI YP_926330.1 557067 D 326297 CDS YP_926331.1 119773591 4602706 557933..558535 1 NC_008700.1 KEGG: sdn:Sden_3350 hypothetical protein; hypothetical protein 558535 4602706 Sama_0451 Shewanella amazonensis SB2B hypothetical protein YP_926331.1 557933 D 326297 CDS YP_926332.1 119773592 4602707 558532..559185 1 NC_008700.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 559185 4602707 Sama_0452 Shewanella amazonensis SB2B MSHA biogenesis protein MshJ YP_926332.1 558532 D 326297 CDS YP_926333.1 119773593 4602708 559169..559465 1 NC_008700.1 KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 559465 4602708 Sama_0453 Shewanella amazonensis SB2B MSHA biogenesis protein MshK YP_926333.1 559169 D 326297 CDS YP_926334.1 119773594 4602709 559471..561156 1 NC_008700.1 KEGG: son:SO4112 MSHA biogenesis protein MshL; MSHA biogenesis protein MshL 561156 4602709 Sama_0454 Shewanella amazonensis SB2B MSHA biogenesis protein MshL YP_926334.1 559471 D 326297 CDS YP_926335.1 119773595 4602710 561158..562060 1 NC_008700.1 KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 562060 4602710 Sama_0455 Shewanella amazonensis SB2B MSHA biogenesis protein MshM YP_926335.1 561158 D 326297 CDS YP_926336.1 119773596 4602711 562057..563256 1 NC_008700.1 KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; MSHA biogenesis protein MshN 563256 4602711 Sama_0456 Shewanella amazonensis SB2B MSHA biogenesis protein MshN YP_926336.1 562057 D 326297 CDS YP_926337.1 119773597 4602712 563253..565016 1 NC_008700.1 KEGG: son:SO4109 MSHA biogenesis protein MshE; MSHA biogenesis protein MshE 565016 4602712 Sama_0457 Shewanella amazonensis SB2B MSHA biogenesis protein MshE YP_926337.1 563253 D 326297 CDS YP_926338.1 119773598 4602713 565019..566239 1 NC_008700.1 KEGG: son:SO4108 MSHA biogenesis protein MshG; MSHA biogenesis protein MshG 566239 4602713 Sama_0458 Shewanella amazonensis SB2B MSHA biogenesis protein MshG YP_926338.1 565019 D 326297 CDS YP_926339.1 119773599 4602714 566243..566734 1 NC_008700.1 KEGG: son:SO4107 hypothetical protein; hypothetical protein 566734 4602714 Sama_0459 Shewanella amazonensis SB2B hypothetical protein YP_926339.1 566243 D 326297 CDS YP_926340.1 119773600 4602715 566805..567410 1 NC_008700.1 KEGG: son:SO4106 MSHA pilin protein MshB; MSHA pilin protein MshB 567410 4602715 Sama_0460 Shewanella amazonensis SB2B MSHA pilin protein MshB YP_926340.1 566805 D 326297 CDS YP_926341.1 119773601 4602716 567449..567967 1 NC_008700.1 KEGG: son:SO4105 MSHA pilin protein MshA; MSHA pilin protein MshA 567967 4602716 Sama_0461 Shewanella amazonensis SB2B MSHA pilin protein MshA YP_926341.1 567449 D 326297 CDS YP_926342.1 119773602 4602717 568086..568577 1 NC_008700.1 KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC 568577 4602717 Sama_0462 Shewanella amazonensis SB2B MSHA pilin protein MshC YP_926342.1 568086 D 326297 CDS YP_926343.1 119773603 4602718 568567..569094 1 NC_008700.1 KEGG: son:SO4103 MSHA pilin protein MshD; MSHA pilin protein MshD 569094 4602718 Sama_0463 Shewanella amazonensis SB2B MSHA pilin protein MshD YP_926343.1 568567 D 326297 CDS YP_926344.1 119773604 4602719 569094..569942 1 NC_008700.1 KEGG: sdn:Sden_3337 MSHA biogenesis protein MshO precursor; MSHA biogenesis protein MshO 569942 4602719 Sama_0464 Shewanella amazonensis SB2B MSHA biogenesis protein MshO YP_926344.1 569094 D 326297 CDS YP_926345.1 119773605 4602720 569932..570351 1 NC_008700.1 KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 570351 4602720 Sama_0465 Shewanella amazonensis SB2B MSHA biogenesis protein MshP YP_926345.1 569932 D 326297 CDS YP_926346.1 119773606 4602721 570455..572968 1 NC_008700.1 KEGG: she:Shewmr4_3473 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 572968 4602721 Sama_0466 Shewanella amazonensis SB2B MSHA biogenesis protein MshQ YP_926346.1 570455 D 326297 CDS YP_926347.2 229220634 4602722 573182..574231 1 NC_008700.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 574231 4602722 Sama_0467 Shewanella amazonensis SB2B rod shape-determining protein MreB YP_926347.2 573182 D 326297 CDS YP_926348.1 119773608 4602723 574277..575206 1 NC_008700.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 575206 4602723 Sama_0468 Shewanella amazonensis SB2B rod shape-determining protein MreC YP_926348.1 574277 D 326297 CDS YP_926349.1 119773609 4602724 575203..575691 1 NC_008700.1 KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 575691 4602724 Sama_0469 Shewanella amazonensis SB2B rod shape-determining protein MreD YP_926349.1 575203 D 326297 CDS YP_926350.1 119773610 4602725 575697..576281 1 NC_008700.1 KEGG: sdn:Sden_3331 maf protein; maf protein 576281 4602725 Sama_0470 Shewanella amazonensis SB2B maf protein YP_926350.1 575697 D 326297 CDS YP_926351.1 119773611 4602726 576329..577837 1 NC_008700.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 577837 4602726 Sama_0471 Shewanella amazonensis SB2B ribonuclease G YP_926351.1 576329 D 326297 CDS YP_926352.1 119773612 4602727 577837..582384 1 NC_008700.1 KEGG: son:SO4093 hypothetical protein; membrane protein 582384 4602727 Sama_0472 Shewanella amazonensis SB2B membrane protein YP_926352.1 577837 D 326297 CDS YP_926353.1 119773613 4602728 582308..583150 1 NC_008700.1 KEGG: son:SO4092 hydrolase, carbon-nitrogen family; carbon-nitrogen family hydrolase 583150 4602728 Sama_0473 Shewanella amazonensis SB2B carbon-nitrogen family hydrolase YP_926353.1 582308 D 326297 CDS YP_926354.1 119773614 4602729 583184..584632 1 NC_008700.1 KEGG: son:SO4091 TldD protein; TldD protein 584632 4602729 Sama_0474 Shewanella amazonensis SB2B TldD protein YP_926354.1 583184 D 326297 CDS YP_926355.1 119773615 4602730 complement(585205..586251) 1 NC_008700.1 KEGG: vpa:VPA1416 putative oxidoreductase; putative oxidoreductase 586251 4602730 Sama_0475 Shewanella amazonensis SB2B putative oxidoreductase YP_926355.1 585205 R 326297 CDS YP_926356.1 119773616 4602731 complement(586362..586952) 1 NC_008700.1 KEGG: sdn:Sden_1388 regulatory protein, TetR; TetR family transcriptional regulator 586952 4602731 Sama_0476 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_926356.1 586362 R 326297 CDS YP_926357.1 119773617 4602732 587413..588966 1 NC_008700.1 KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein 588966 4602732 Sama_0477 Shewanella amazonensis SB2B outer membrane efflux protein YP_926357.1 587413 D 326297 CDS YP_926358.1 119773618 4602733 588963..589931 1 NC_008700.1 KEGG: son:SO4089 HlyD family secretion protein; HlyD family secretion protein 589931 4602733 Sama_0478 Shewanella amazonensis SB2B HlyD family secretion protein YP_926358.1 588963 D 326297 CDS YP_926359.1 119773619 4602734 589935..591062 1 NC_008700.1 KEGG: son:SO4088 conserved hypothetical protein; hypothetical protein 591062 4602734 Sama_0479 Shewanella amazonensis SB2B hypothetical protein YP_926359.1 589935 D 326297 CDS YP_926360.1 119773620 4602735 591059..592219 1 NC_008700.1 KEGG: son:SO4087 conserved hypothetical protein; hypothetical protein 592219 4602735 Sama_0480 Shewanella amazonensis SB2B hypothetical protein YP_926360.1 591059 D 326297 CDS YP_926361.1 119773621 4602736 complement(592271..592819) 1 NC_008700.1 KEGG: sdn:Sden_3068 protein of unknown function DUF615; hypothetical protein 592819 4602736 Sama_0481 Shewanella amazonensis SB2B hypothetical protein YP_926361.1 592271 R 326297 CDS YP_926362.1 119773622 4602737 592968..594329 1 NC_008700.1 KEGG: son:SO4078 PmbA protein; PmbA protein 594329 4602737 Sama_0482 Shewanella amazonensis SB2B PmbA protein YP_926362.1 592968 D 326297 CDS YP_926363.1 119773623 4602738 complement(594438..595316) 1 NC_008700.1 KEGG: son:SO4075 hypothetical protein; hypothetical protein 595316 4602738 Sama_0483 Shewanella amazonensis SB2B hypothetical protein YP_926363.1 594438 R 326297 CDS YP_926364.1 119773624 4602739 595488..595727 1 NC_008700.1 KEGG: son:SO4073 hypothetical protein; hypothetical protein 595727 4602739 Sama_0484 Shewanella amazonensis SB2B hypothetical protein YP_926364.1 595488 D 326297 CDS YP_926365.1 119773625 4602740 complement(595731..597212) 1 NC_008700.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 597212 rimO 4602740 rimO Shewanella amazonensis SB2B 30S ribosomal protein S12 methylthiotransferase YP_926365.1 595731 R 326297 CDS YP_926366.1 119773626 4602741 597397..598104 1 NC_008700.1 KEGG: son:SO4070 hypothetical protein; hypothetical protein 598104 4602741 Sama_0486 Shewanella amazonensis SB2B hypothetical protein YP_926366.1 597397 D 326297 CDS YP_926367.1 119773627 4602742 complement(598185..598682) 1 NC_008700.1 KEGG: xcv:XCV3915 N-acetyltransferase; N-acetyltransferase 598682 4602742 Sama_0487 Shewanella amazonensis SB2B N-acetyltransferase YP_926367.1 598185 R 326297 CDS YP_926368.1 119773628 4602743 598963..599883 1 NC_008700.1 KEGG: gvi:gll0899 metalloprotease MEP1 homolog; hypothetical protein 599883 4602743 Sama_0488 Shewanella amazonensis SB2B hypothetical protein YP_926368.1 598963 D 326297 CDS YP_926369.1 119773629 4602744 complement(599939..600397) 1 NC_008700.1 KEGG: sdn:Sden_0976 UspA; hypothetical protein 600397 4602744 Sama_0489 Shewanella amazonensis SB2B hypothetical protein YP_926369.1 599939 R 326297 CDS YP_926370.1 119773630 4602745 complement(600712..602559) 1 NC_008700.1 KEGG: ava:Ava_3197 Zn-dependent protease with chaperone function-like; Zn-dependent protease with chaperone function 602559 4602745 Sama_0490 Shewanella amazonensis SB2B Zn-dependent protease with chaperone function YP_926370.1 600712 R 326297 CDS YP_926371.1 119773631 4602746 complement(602790..603893) 1 NC_008700.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 603893 4602746 Sama_0491 Shewanella amazonensis SB2B phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_926371.1 602790 R 326297 CDS YP_926372.1 119773632 4602747 complement(604192..605688) 1 NC_008700.1 KEGG: pat:Patl_4147 sodium/proline symporter; sodium/proline symporter 605688 4602747 Sama_0492 Shewanella amazonensis SB2B sodium/proline symporter YP_926372.1 604192 R 326297 CDS YP_926373.1 119773633 4602748 606322..606675 1 NC_008700.1 KEGG: hch:HCH_04651 predicted transcriptional regulator; transcriptional regulator 606675 4602748 Sama_0493 Shewanella amazonensis SB2B transcriptional regulator YP_926373.1 606322 D 326297 CDS YP_926374.1 119773634 4602749 606705..607718 1 NC_008700.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 607718 4602749 Sama_0494 Shewanella amazonensis SB2B glyceraldehyde-3-phosphate dehydrogenase YP_926374.1 606705 D 326297 CDS YP_926375.1 119773635 4602750 607723..608934 1 NC_008700.1 KEGG: son:SO0539 transporter, putative; transporter 608934 4602750 Sama_0495 Shewanella amazonensis SB2B transporter YP_926375.1 607723 D 326297 CDS YP_926376.1 119773636 4602751 608979..611282 1 NC_008700.1 KEGG: ilo:IL2267 signaling protein (CheY,EAL,GGDEF domain proteins); putative diguanylate phosphodiesterase 611282 4602751 Sama_0496 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_926376.1 608979 D 326297 CDS YP_926377.1 119773637 4602752 611362..612816 1 NC_008700.1 KEGG: son:SO0541 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 612816 4602752 Sama_0497 Shewanella amazonensis SB2B metallo-beta-lactamase family protein YP_926377.1 611362 D 326297 CDS YP_926378.1 119773638 4602753 612880..613830 1 NC_008700.1 KEGG: son:SO4040 integral membrane domain protein; integral membrane domain-containing protein 613830 4602753 Sama_0498 Shewanella amazonensis SB2B integral membrane domain-containing protein YP_926378.1 612880 D 326297 CDS YP_926379.1 119773639 4602754 613827..614441 1 NC_008700.1 KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD superfamily hydrolase 614441 4602754 Sama_0499 Shewanella amazonensis SB2B HAD superfamily hydrolase YP_926379.1 613827 D 326297 CDS YP_926380.1 119773640 4602755 complement(614413..614751) 1 NC_008700.1 KEGG: son:SO4035 hypothetical protein; hypothetical protein 614751 4602755 Sama_0500 Shewanella amazonensis SB2B hypothetical protein YP_926380.1 614413 R 326297 CDS YP_926381.1 119773641 4602756 614837..615427 1 NC_008700.1 KEGG: son:SO0112 hypothetical protein; hypothetical protein 615427 4602756 Sama_0501 Shewanella amazonensis SB2B hypothetical protein YP_926381.1 614837 D 326297 CDS YP_926382.1 119773642 4602757 complement(615538..617202) 1 NC_008700.1 KEGG: sdn:Sden_2371 alkaline phosphatase; alkaline phosphatase 617202 4602757 Sama_0502 Shewanella amazonensis SB2B alkaline phosphatase YP_926382.1 615538 R 326297 CDS YP_926383.1 119773643 4602758 complement(617349..617810) 1 NC_008700.1 KEGG: sdn:Sden_0479 conserved hypothetical protein 22; hypothetical protein 617810 4602758 Sama_0503 Shewanella amazonensis SB2B hypothetical protein YP_926383.1 617349 R 326297 CDS YP_926384.1 119773644 4602759 617948..619003 1 NC_008700.1 KEGG: sdn:Sden_0480 hypothetical protein; hypothetical protein 619003 4602759 Sama_0504 Shewanella amazonensis SB2B hypothetical protein YP_926384.1 617948 D 326297 CDS YP_926385.1 119773645 4602760 619137..619712 1 NC_008700.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 619712 4602760 Sama_0505 Shewanella amazonensis SB2B ATP-dependent protease La YP_926385.1 619137 D 326297 CDS YP_926386.1 119773646 4602761 619784..620713 1 NC_008700.1 KEGG: sdn:Sden_0482 pseudouridine synthase; pseudouridine synthase 620713 4602761 Sama_0506 Shewanella amazonensis SB2B pseudouridine synthase YP_926386.1 619784 D 326297 CDS YP_926387.1 119773647 4602762 620919..621968 1 NC_008700.1 KEGG: son:SO4178 hypothetical protein; hypothetical protein 621968 4602762 Sama_0507 Shewanella amazonensis SB2B hypothetical protein YP_926387.1 620919 D 326297 CDS YP_926388.1 119773648 4602763 complement(622053..623924) 1 NC_008700.1 KEGG: son:SO4176 hypothetical protein; hypothetical protein 623924 4602763 Sama_0508 Shewanella amazonensis SB2B hypothetical protein YP_926388.1 622053 R 326297 CDS YP_926389.1 119773649 4602764 624129..625034 1 NC_008700.1 KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein; NAD dependent epimerase/dehydratase family protein 625034 4602764 Sama_0509 Shewanella amazonensis SB2B NAD dependent epimerase/dehydratase family protein YP_926389.1 624129 D 326297 CDS YP_926390.1 119773650 4602765 complement(625127..626077) 1 NC_008700.1 KEGG: eca:ECA0652 hypothetical protein; hypothetical protein 626077 4602765 Sama_0510 Shewanella amazonensis SB2B hypothetical protein YP_926390.1 625127 R 326297 CDS YP_926391.1 119773651 4602766 626443..628404 1 NC_008700.1 KEGG: vvu:VV20989 alkyl sulfatase; alkyl sulfatase 628404 4602766 Sama_0511 Shewanella amazonensis SB2B alkyl sulfatase YP_926391.1 626443 D 326297 CDS YP_926392.1 119773652 4602767 complement(628459..630372) 1 NC_008700.1 KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; ATP-dependent RNA helicase DeaD 630372 4602767 Sama_0512 Shewanella amazonensis SB2B ATP-dependent RNA helicase DeaD YP_926392.1 628459 R 326297 CDS YP_926393.1 119773653 4602768 complement(630575..631600) 1 NC_008700.1 KEGG: sdn:Sden_3316 peptidase M28; peptidase M28 631600 4602768 Sama_0513 Shewanella amazonensis SB2B peptidase M28 YP_926393.1 630575 R 326297 CDS YP_926394.1 119773654 4602769 complement(631612..634440) 1 NC_008700.1 KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 634440 4602769 Sama_0514 Shewanella amazonensis SB2B excinuclease ABC subunit A YP_926394.1 631612 R 326297 CDS YP_926395.1 119773655 4602770 634698..636065 1 NC_008700.1 KEGG: son:SO4029 transporter, putative; transporter 636065 4602770 Sama_0515 Shewanella amazonensis SB2B transporter YP_926395.1 634698 D 326297 CDS YP_926396.1 119773656 4602771 636101..636805 1 NC_008700.1 KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 636805 4602771 Sama_0516 Shewanella amazonensis SB2B single-strand binding protein YP_926396.1 636101 D 326297 CDS YP_926397.1 119773657 4602772 complement(636932..637732) 1 NC_008700.1 KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; D-beta-hydroxybutyrate dehydrogenase 637732 4602772 Sama_0517 Shewanella amazonensis SB2B D-beta-hydroxybutyrate dehydrogenase YP_926397.1 636932 R 326297 CDS YP_926398.1 119773658 4602773 637904..638665 1 NC_008700.1 KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit; 3-oxoacid CoA-transferase 638665 4602773 Sama_0518 Shewanella amazonensis SB2B 3-oxoacid CoA-transferase YP_926398.1 637904 D 326297 CDS YP_926399.1 119773659 4602774 638675..639340 1 NC_008700.1 KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit; 3-oxoacid CoA-transferase 639340 4602774 Sama_0519 Shewanella amazonensis SB2B 3-oxoacid CoA-transferase YP_926399.1 638675 D 326297 CDS YP_926400.1 119773660 4602775 639484..640431 1 NC_008700.1 KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; putative polyhydroxyalkanoate depolymerase 640431 4602775 Sama_0520 Shewanella amazonensis SB2B putative polyhydroxyalkanoate depolymerase YP_926400.1 639484 D 326297 CDS YP_926401.1 119773661 4602776 640698..642974 1 NC_008700.1 KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor 642974 4602776 Sama_0521 Shewanella amazonensis SB2B TonB-dependent receptor YP_926401.1 640698 D 326297 CDS YP_926402.1 119773662 4602777 643103..643774 1 NC_008700.1 KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; response regulator receiver protein 643774 4602777 Sama_0522 Shewanella amazonensis SB2B response regulator receiver protein YP_926402.1 643103 D 326297 CDS YP_926403.1 119773663 4602778 complement(643905..647444) 1 NC_008700.1 KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; sensory box sensor histidine kinase/response regulator 647444 4602778 Sama_0523 Shewanella amazonensis SB2B sensory box sensor histidine kinase/response regulator YP_926403.1 643905 R 326297 CDS YP_926404.1 119773664 4602779 647574..648740 1 NC_008700.1 KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator family transporter 648740 4602779 Sama_0524 Shewanella amazonensis SB2B major facilitator family transporter YP_926404.1 647574 D 326297 CDS YP_926405.1 119773665 4602780 648743..649699 1 NC_008700.1 KEGG: cps:CPS_0941 putative lipase; putative lipase 649699 4602780 Sama_0525 Shewanella amazonensis SB2B putative lipase YP_926405.1 648743 D 326297 CDS YP_926406.1 119773666 4602781 complement(649686..650492) 1 NC_008700.1 KEGG: hch:HCH_02925 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 650492 4602781 Sama_0526 Shewanella amazonensis SB2B hypothetical protein YP_926406.1 649686 R 326297 CDS YP_926407.1 119773667 4602782 complement(650682..651740) 1 NC_008700.1 KEGG: son:SO4047 cytochrome c family protein; cytochrome c family protein 651740 4602782 Sama_0527 Shewanella amazonensis SB2B cytochrome c family protein YP_926407.1 650682 R 326297 CDS YP_926408.1 119773668 4602783 complement(651752..652366) 1 NC_008700.1 KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein 652366 4602783 Sama_0528 Shewanella amazonensis SB2B cytochrome c family protein YP_926408.1 651752 R 326297 CDS YP_926409.1 119773669 4602784 652541..653227 1 NC_008700.1 KEGG: neu:NE1275 hypothetical protein; hypothetical protein 653227 4602784 Sama_0529 Shewanella amazonensis SB2B hypothetical protein YP_926409.1 652541 D 326297 CDS YP_926410.1 119773670 4602785 653396..654574 1 NC_008700.1 KEGG: dar:Daro_3621 GGDEF; response regulator receiver protein 654574 4602785 Sama_0530 Shewanella amazonensis SB2B response regulator receiver protein YP_926410.1 653396 D 326297 CDS YP_926411.1 119773671 4602786 654762..655235 1 NC_008700.1 KEGG: shm:Shewmr7_0993 YbaK/EbsC protein; YbaK/EbsC protein 655235 4602786 Sama_0531 Shewanella amazonensis SB2B YbaK/EbsC protein YP_926411.1 654762 D 326297 CDS YP_926412.1 119773672 4602787 655435..657006 1 NC_008700.1 KEGG: son:SO3404 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 657006 4602787 Sama_0532 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926412.1 655435 D 326297 CDS YP_926413.1 119773673 4602788 657261..658262 1 NC_008700.1 KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; zinc-containing alcohol dehydrogenase 658262 4602788 Sama_0533 Shewanella amazonensis SB2B zinc-containing alcohol dehydrogenase YP_926413.1 657261 D 326297 CDS YP_926414.1 119773674 4602789 658509..658931 1 NC_008700.1 KEGG: son:SO0691 hypothetical protein; hypothetical protein 658931 4602789 Sama_0534 Shewanella amazonensis SB2B hypothetical protein YP_926414.1 658509 D 326297 CDS YP_926415.1 119773675 4602790 complement(659093..660118) 1 NC_008700.1 KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 660118 4602790 Sama_0535 Shewanella amazonensis SB2B aldose 1-epimerase YP_926415.1 659093 R 326297 CDS YP_926416.1 119773676 4602791 complement(660214..661362) 1 NC_008700.1 KEGG: son:SO0694 galactokinase; galactokinase 661362 4602791 Sama_0536 Shewanella amazonensis SB2B galactokinase YP_926416.1 660214 R 326297 CDS YP_926417.1 119773677 4602792 complement(661514..663121) 1 NC_008700.1 KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; glutathione-regulated potassium-efflux system protein KefC 663121 4602792 Sama_0537 Shewanella amazonensis SB2B glutathione-regulated potassium-efflux system protein KefC YP_926417.1 661514 R 326297 CDS YP_926418.1 119773678 4602793 complement(663245..665068) 1 NC_008700.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 665068 dipZ 4602793 dipZ Shewanella amazonensis SB2B thiol:disulfide interchange protein YP_926418.1 663245 R 326297 CDS YP_926419.1 119773679 4602794 complement(665065..665397) 1 NC_008700.1 KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; periplasmic divalent cation tolerance protein CutA 665397 4602794 Sama_0539 Shewanella amazonensis SB2B periplasmic divalent cation tolerance protein CutA YP_926419.1 665065 R 326297 CDS YP_926420.1 119773680 4602795 665610..666200 1 NC_008700.1 KEGG: sdn:Sden_0418 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 666200 4602795 Sama_0540 Shewanella amazonensis SB2B FxsA cytoplasmic membrane protein YP_926420.1 665610 D 326297 CDS YP_926421.1 119773681 4602796 complement(666263..668083) 1 NC_008700.1 KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase 668083 4602796 Sama_0541 Shewanella amazonensis SB2B serine/threonine protein kinase YP_926421.1 666263 R 326297 CDS YP_926422.1 119773682 4602797 668288..668632 1 NC_008700.1 KEGG: son:SO0581 hypothetical protein; hypothetical protein 668632 4602797 Sama_0542 Shewanella amazonensis SB2B hypothetical protein YP_926422.1 668288 D 326297 CDS YP_926423.1 119773683 4602798 668701..669357 1 NC_008700.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 669357 4602798 Sama_0543 Shewanella amazonensis SB2B thiopurine S-methyltransferase YP_926423.1 668701 D 326297 CDS YP_926424.1 119773684 4602799 complement(669483..670568) 1 NC_008700.1 KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin 670568 4602799 Sama_0544 Shewanella amazonensis SB2B outer membrane porin YP_926424.1 669483 R 326297 CDS YP_926425.1 119773685 4602800 complement(670954..672021) 1 NC_008700.1 KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin 672021 4602800 Sama_0545 Shewanella amazonensis SB2B outer membrane porin YP_926425.1 670954 R 326297 CDS YP_926426.1 119773686 4602801 672326..673159 1 NC_008700.1 KEGG: son:SO3895 HesA/MoeB/ThiF family protein; HesA/MoeB/ThiF family protein 673159 4602801 Sama_0546 Shewanella amazonensis SB2B HesA/MoeB/ThiF family protein YP_926426.1 672326 D 326297 CDS YP_926427.1 119773687 4602802 complement(673156..674799) 1 NC_008700.1 KEGG: son:SO3894 sensor histidine kinase; sensor histidine kinase 674799 4602802 Sama_0547 Shewanella amazonensis SB2B sensor histidine kinase YP_926427.1 673156 R 326297 CDS YP_926428.1 119773688 4602803 674969..675589 1 NC_008700.1 KEGG: sdn:Sden_0544 hypothetical protein; hypothetical protein 675589 4602803 Sama_0548 Shewanella amazonensis SB2B hypothetical protein YP_926428.1 674969 D 326297 CDS YP_926429.1 119773689 4602804 complement(675686..675814) 1 NC_008700.1 KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein 675814 4602804 Sama_0549 Shewanella amazonensis SB2B hypothetical protein YP_926429.1 675686 R 326297 CDS YP_926430.1 119773690 4602805 676060..677616 1 NC_008700.1 KEGG: son:SO3890 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 677616 4602805 Sama_0550 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926430.1 676060 D 326297 CDS YP_926431.1 119773691 4602806 677767..678540 1 NC_008700.1 KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; hypothetical protein 678540 4602806 Sama_0551 Shewanella amazonensis SB2B hypothetical protein YP_926431.1 677767 D 326297 CDS YP_926432.1 119773692 4602807 678644..680590 1 NC_008700.1 KEGG: sdn:Sden_2239 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 680590 4602807 Sama_0552 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926432.1 678644 D 326297 CDS YP_926433.1 119773693 4606035 complement(682208..684316) 1 NC_008700.1 KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; putative transcriptional regulator CadC 684316 4606035 Sama_0554 Shewanella amazonensis SB2B putative transcriptional regulator CadC YP_926433.1 682208 R 326297 CDS YP_926434.1 119773694 4602809 complement(684514..688713) 1 NC_008700.1 KEGG: pat:Patl_1035 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 688713 4602809 Sama_0555 Shewanella amazonensis SB2B peptidase S8/S53 subtilisin kexin sedolisin YP_926434.1 684514 R 326297 CDS YP_926435.1 119773695 4602810 complement(688759..692544) 1 NC_008700.1 KEGG: son:SO3800 serine protease, subtilase family; hypothetical protein 692544 4602810 Sama_0556 Shewanella amazonensis SB2B hypothetical protein YP_926435.1 688759 R 326297 CDS YP_926436.1 119773696 4606036 693651..694433 1 NC_008700.1 KEGG: nmu:Nmul_A1650 protein of unknown function DUF81; hypothetical protein 694433 4606036 Sama_0558 Shewanella amazonensis SB2B hypothetical protein YP_926436.1 693651 D 326297 CDS YP_926437.1 119773697 4602812 complement(694555..695007) 1 NC_008700.1 hypothetical protein 695007 4602812 Sama_0559 Shewanella amazonensis SB2B hypothetical protein YP_926437.1 694555 R 326297 CDS YP_926438.1 119773698 4602813 complement(695465..696634) 1 NC_008700.1 KEGG: cps:CPS_2647 hypothetical protein; hypothetical protein 696634 4602813 Sama_0560 Shewanella amazonensis SB2B hypothetical protein YP_926438.1 695465 R 326297 CDS YP_926439.1 119773699 4602814 complement(696656..697687) 1 NC_008700.1 KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; carbohydrate kinase 697687 4602814 Sama_0561 Shewanella amazonensis SB2B carbohydrate kinase YP_926439.1 696656 R 326297 CDS YP_926440.1 119773700 4602815 complement(697684..698925) 1 NC_008700.1 KEGG: pat:Patl_0119 glucose/galactose transporter; glucose/galactose transporter 698925 4602815 Sama_0562 Shewanella amazonensis SB2B glucose/galactose transporter YP_926440.1 697684 R 326297 CDS YP_926441.1 119773701 4602816 complement(698929..701478) 1 NC_008700.1 KEGG: cps:CPS_2650 alpha-1,2-mannosidase family protein; alpha-1,2-mannosidase family protein 701478 4602816 Sama_0563 Shewanella amazonensis SB2B alpha-1,2-mannosidase family protein YP_926441.1 698929 R 326297 CDS YP_926442.1 119773702 4602817 complement(701524..703878) 1 NC_008700.1 KEGG: cps:CPS_2651 alpha-1,2-mannosidase family protein; alpha-1,2-mannosidase family protein 703878 4602817 Sama_0564 Shewanella amazonensis SB2B alpha-1,2-mannosidase family protein YP_926442.1 701524 R 326297 CDS YP_926443.1 119773703 4602818 704038..705057 1 NC_008700.1 KEGG: cps:CPS_2652 transcriptional regulator, LacI family; LacI family transcriptional regulator 705057 4602818 Sama_0565 Shewanella amazonensis SB2B LacI family transcriptional regulator YP_926443.1 704038 D 326297 CDS YP_926444.1 119773704 4602819 complement(705114..706226) 1 NC_008700.1 KEGG: son:SO0823 hypothetical protein; hypothetical protein 706226 4602819 Sama_0566 Shewanella amazonensis SB2B hypothetical protein YP_926444.1 705114 R 326297 CDS YP_926445.1 119773705 4602820 complement(706314..706658) 1 NC_008700.1 hypothetical protein 706658 4602820 Sama_0567 Shewanella amazonensis SB2B hypothetical protein YP_926445.1 706314 R 326297 CDS YP_926446.1 119773706 4602821 complement(706662..708332) 1 NC_008700.1 KEGG: son:SO0826 hypothetical protein; hypothetical protein 708332 4602821 Sama_0568 Shewanella amazonensis SB2B hypothetical protein YP_926446.1 706662 R 326297 CDS YP_926447.1 119773707 4602822 complement(708577..709539) 1 NC_008700.1 KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 709539 4602822 Sama_0569 Shewanella amazonensis SB2B rRNA (guanine-N(2)-)-methyltransferase YP_926447.1 708577 R 326297 CDS YP_926448.1 119773708 4602823 709781..710185 1 NC_008700.1 KEGG: nmu:Nmul_A1955 hypothetical protein; hypothetical protein 710185 4602823 Sama_0570 Shewanella amazonensis SB2B hypothetical protein YP_926448.1 709781 D 326297 CDS YP_926449.1 119773709 4602824 710172..711323 1 NC_008700.1 KEGG: cps:CPS_0951 hypothetical protein; hypothetical protein 711323 4602824 Sama_0571 Shewanella amazonensis SB2B hypothetical protein YP_926449.1 710172 D 326297 CDS YP_926450.1 119773710 4602825 711328..713802 1 NC_008700.1 KEGG: pat:Patl_0060 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 713802 4602825 Sama_0572 Shewanella amazonensis SB2B diguanylate cyclase/phosphodiesterase YP_926450.1 711328 D 326297 CDS YP_926451.1 119773711 4602826 complement(713799..715277) 1 NC_008700.1 KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase 715277 4602826 Sama_0573 Shewanella amazonensis SB2B alkaline phosphatase YP_926451.1 713799 R 326297 CDS YP_926452.1 119773712 4602827 complement(715316..716266) 1 NC_008700.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 716266 4602827 Sama_0574 Shewanella amazonensis SB2B glutathione synthetase YP_926452.1 715316 R 326297 CDS YP_926453.1 119773713 4602828 complement(716297..717028) 1 NC_008700.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 717028 4602828 Sama_0575 Shewanella amazonensis SB2B 16S ribosomal RNA methyltransferase RsmE YP_926453.1 716297 R 326297 CDS YP_926454.1 119773714 4602829 complement(717046..717774) 1 NC_008700.1 KEGG: son:SO0833 endonuclease I; deoxyribonuclease I 717774 4602829 Sama_0576 Shewanella amazonensis SB2B deoxyribonuclease I YP_926454.1 717046 R 326297 CDS YP_926455.1 119773715 4602830 complement(717920..718474) 1 NC_008700.1 KEGG: son:SO0834 sprT protein, putative; sprT protein 718474 4602830 Sama_0577 Shewanella amazonensis SB2B sprT protein YP_926455.1 717920 R 326297 CDS YP_926456.1 119773716 4602831 complement(718547..719704) 1 NC_008700.1 KEGG: son:SO0835 hypothetical protein; hypothetical protein 719704 4602831 Sama_0578 Shewanella amazonensis SB2B hypothetical protein YP_926456.1 718547 R 326297 CDS YP_926457.1 119773717 4602832 complement(719846..720757) 1 NC_008700.1 KEGG: son:SO0839 transcriptional regulator, LysR family; LysR family transcriptional regulator 720757 4602832 Sama_0579 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926457.1 719846 R 326297 CDS YP_926458.1 119773718 4602833 720879..725432 1 NC_008700.1 KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; acetyl-CoA carboxylase multifunctional carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase 725432 4602833 Sama_0580 Shewanella amazonensis SB2B acetyl-CoA carboxylase multifunctional carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase YP_926458.1 720879 D 326297 CDS YP_926459.1 119773719 4602834 725723..726970 1 NC_008700.1 KEGG: pat:Patl_0484 hypothetical protein; hypothetical protein 726970 4602834 Sama_0581 Shewanella amazonensis SB2B hypothetical protein YP_926459.1 725723 D 326297 CDS YP_926460.1 119773720 4602835 726973..727401 1 NC_008700.1 KEGG: dar:Daro_2871 hypothetical protein; hypothetical protein 727401 4602835 Sama_0582 Shewanella amazonensis SB2B hypothetical protein YP_926460.1 726973 D 326297 CDS YP_926461.1 119773721 4602836 727391..728977 1 NC_008700.1 KEGG: pat:Patl_0006 diguanylate cyclase; diguanylate cyclase 728977 4602836 Sama_0583 Shewanella amazonensis SB2B diguanylate cyclase YP_926461.1 727391 D 326297 CDS YP_926462.1 119773722 4602837 729256..731346 1 NC_008700.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 731346 4602837 Sama_0584 Shewanella amazonensis SB2B elongation factor G YP_926462.1 729256 D 326297 CDS YP_926463.1 119773723 4602838 731480..732361 1 NC_008700.1 KEGG: sdn:Sden_3443 hypothetical protein; hypothetical protein 732361 4602838 Sama_0585 Shewanella amazonensis SB2B hypothetical protein YP_926463.1 731480 D 326297 CDS YP_926464.1 119773724 4602839 complement(732315..733223) 1 NC_008700.1 KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator 733223 4602839 Sama_0586 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926464.1 732315 R 326297 CDS YP_926465.1 119773725 4602840 complement(733548..734306) 1 NC_008700.1 KEGG: sdn:Sden_0640 PepSY-associated TM helix; PepSY-associated TM helix family protein 734306 4602840 Sama_0587 Shewanella amazonensis SB2B PepSY-associated TM helix family protein YP_926465.1 733548 R 326297 CDS YP_926466.1 119773726 4602841 complement(734310..734819) 1 NC_008700.1 KEGG: sdn:Sden_0639 FMN-binding; FMN-binding protein 734819 4602841 Sama_0588 Shewanella amazonensis SB2B FMN-binding protein YP_926466.1 734310 R 326297 CDS YP_926467.1 119773727 4602842 complement(734874..736049) 1 NC_008700.1 KEGG: sdn:Sden_0638 phosphate-selective porin O and P; phosphate-selective porin O and P 736049 4602842 Sama_0589 Shewanella amazonensis SB2B phosphate-selective porin O and P YP_926467.1 734874 R 326297 CDS YP_926468.1 119773728 4602843 complement(736305..738518) 1 NC_008700.1 KEGG: pha:PSHAa2478 putative TonB-dependent receptor protein; putative TonB-dependent receptor protein 738518 4602843 Sama_0590 Shewanella amazonensis SB2B putative TonB-dependent receptor protein YP_926468.1 736305 R 326297 CDS YP_926469.1 119773729 4602844 738742..739443 1 NC_008700.1 KEGG: son:SO4011 hypothetical protein; hypothetical protein 739443 4602844 Sama_0591 Shewanella amazonensis SB2B hypothetical protein YP_926469.1 738742 D 326297 CDS YP_926470.1 119773730 4602845 739679..743359 1 NC_008700.1 KEGG: son:SO4008 hypothetical protein; hypothetical protein 743359 4602845 Sama_0592 Shewanella amazonensis SB2B hypothetical protein YP_926470.1 739679 D 326297 CDS YP_926471.1 119773731 4602846 743359..744024 1 NC_008700.1 KEGG: sdn:Sden_2990 hypothetical protein; hypothetical protein 744024 4602846 Sama_0593 Shewanella amazonensis SB2B hypothetical protein YP_926471.1 743359 D 326297 CDS YP_926472.1 119773732 4602847 744021..745241 1 NC_008700.1 KEGG: son:SO4006 hypothetical protein; hypothetical protein 745241 4602847 Sama_0594 Shewanella amazonensis SB2B hypothetical protein YP_926472.1 744021 D 326297 CDS YP_926473.1 119773733 4602848 745648..746892 1 NC_008700.1 KEGG: she:Shewmr4_0642 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 746892 4602848 Sama_0595 Shewanella amazonensis SB2B sodium:dicarboxylate symporter YP_926473.1 745648 D 326297 CDS YP_926474.1 119773734 4602849 747054..747500 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 747500 4602849 Sama_0596 Shewanella amazonensis SB2B IS1004 transposase YP_926474.1 747054 D 326297 CDS YP_926475.1 119773735 4602850 complement(747954..748385) 1 NC_008700.1 KEGG: shm:Shewmr7_3377 hypothetical protein; hypothetical protein 748385 4602850 Sama_0597 Shewanella amazonensis SB2B hypothetical protein YP_926475.1 747954 R 326297 CDS YP_926476.1 119773736 4602851 complement(748603..749136) 1 NC_008700.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 749136 4602851 Sama_0598 Shewanella amazonensis SB2B inorganic pyrophosphatase YP_926476.1 748603 R 326297 CDS YP_926477.1 119773737 4602852 complement(749259..750221) 1 NC_008700.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 750221 4602852 Sama_0599 Shewanella amazonensis SB2B fructose-1,6-bisphosphatase YP_926477.1 749259 R 326297 CDS YP_926478.1 119773738 4602853 750359..752665 1 NC_008700.1 KEGG: son:SO3990 dipeptidyl peptidase IV; dipeptidyl peptidase IV 752665 4602853 Sama_0600 Shewanella amazonensis SB2B dipeptidyl peptidase IV YP_926478.1 750359 D 326297 CDS YP_926479.1 119773739 4602854 complement(752820..753536) 1 NC_008700.1 KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator 753536 4602854 Sama_0601 Shewanella amazonensis SB2B two-component response regulator YP_926479.1 752820 R 326297 CDS YP_926480.1 119773740 4602855 754093..754584 1 NC_008700.1 KEGG: son:SO3987 hypothetical protein; hypothetical protein 754584 4602855 Sama_0602 Shewanella amazonensis SB2B hypothetical protein YP_926480.1 754093 D 326297 CDS YP_926481.1 119773741 4602856 754982..756340 1 NC_008700.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 756340 4602856 Sama_0603 Shewanella amazonensis SB2B aspartate kinase III YP_926481.1 754982 D 326297 CDS YP_926482.1 119773742 4602857 756340..757443 1 NC_008700.1 KEGG: son:SO3985 hypothetical protein; hypothetical protein 757443 4602857 Sama_0604 Shewanella amazonensis SB2B hypothetical protein YP_926482.1 756340 D 326297 CDS YP_926483.1 119773743 4602858 complement(757502..757963) 1 NC_008700.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 757963 4602858 Sama_0605 Shewanella amazonensis SB2B DNA-binding transcriptional regulator AsnC YP_926483.1 757502 R 326297 CDS YP_926484.1 119773744 4602859 complement(758042..758719) 1 NC_008700.1 KEGG: sdn:Sden_3048 pseudouridylate synthase; pseudouridylate synthase 758719 4602859 Sama_0606 Shewanella amazonensis SB2B pseudouridylate synthase YP_926484.1 758042 R 326297 CDS YP_926485.1 119773745 4602860 758871..761060 1 NC_008700.1 KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; putative transcriptional regulator CadC 761060 4602860 Sama_0607 Shewanella amazonensis SB2B putative transcriptional regulator CadC YP_926485.1 758871 D 326297 CDS YP_926486.1 119773746 4602861 complement(761846..762133) 1 NC_008700.1 KEGG: son:SO0973 hypothetical protein; hypothetical protein 762133 4602861 Sama_0608 Shewanella amazonensis SB2B hypothetical protein YP_926486.1 761846 R 326297 CDS YP_926487.1 119773747 4602862 complement(762136..762660) 1 NC_008700.1 KEGG: son:SO0972 hypothetical protein; hypothetical protein 762660 4602862 Sama_0609 Shewanella amazonensis SB2B hypothetical protein YP_926487.1 762136 R 326297 CDS YP_926488.1 119773748 4602863 complement(762657..763067) 1 NC_008700.1 KEGG: son:SO0971 hypothetical protein; hypothetical protein 763067 4602863 Sama_0610 Shewanella amazonensis SB2B hypothetical protein YP_926488.1 762657 R 326297 CDS YP_926489.1 119773749 4602864 763431..765212 1 NC_008700.1 KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; fumarate reductase flavoprotein subunit 765212 4602864 Sama_0611 Shewanella amazonensis SB2B fumarate reductase flavoprotein subunit YP_926489.1 763431 D 326297 CDS YP_926490.1 119773750 4602865 765389..766378 1 NC_008700.1 KEGG: son:SO0968 D-lactate dehydrogenase; D-lactate dehydrogenase 766378 4602865 Sama_0612 Shewanella amazonensis SB2B D-lactate dehydrogenase YP_926490.1 765389 D 326297 CDS YP_926491.1 119773751 4602866 766446..767180 1 NC_008700.1 KEGG: sdn:Sden_3046 dienelactone hydrolase; dienelactone hydrolase 767180 4602866 Sama_0613 Shewanella amazonensis SB2B dienelactone hydrolase YP_926491.1 766446 D 326297 CDS YP_926492.1 119773752 4602867 complement(767252..767887) 1 NC_008700.1 KEGG: sdn:Sden_3043 hypothetical protein; hypothetical protein 767887 4602867 Sama_0614 Shewanella amazonensis SB2B hypothetical protein YP_926492.1 767252 R 326297 CDS YP_926493.1 119773753 4602868 767982..768728 1 NC_008700.1 KEGG: son:SO0960 hypothetical spermidine synthase; putative spermidine synthase 768728 4602868 Sama_0615 Shewanella amazonensis SB2B putative spermidine synthase YP_926493.1 767982 D 326297 CDS YP_926494.1 119773754 4602869 768849..770375 1 NC_008700.1 KEGG: son:SO0959 cytosol aminopeptidase; leucyl aminopeptidase 770375 4602869 Sama_0616 Shewanella amazonensis SB2B leucyl aminopeptidase YP_926494.1 768849 D 326297 CDS YP_926495.1 119773755 4602870 770595..771164 1 NC_008700.1 KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase subunit C 771164 4602870 Sama_0617 Shewanella amazonensis SB2B alkyl hydroperoxide reductase subunit C YP_926495.1 770595 D 326297 CDS YP_926496.1 119773756 4602871 771262..772824 1 NC_008700.1 KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; alkyl hydroperoxide reductase subunit F 772824 4602871 Sama_0618 Shewanella amazonensis SB2B alkyl hydroperoxide reductase subunit F YP_926496.1 771262 D 326297 CDS YP_926497.1 119773757 4602872 772953..774089 1 NC_008700.1 KEGG: syf:Synpcc7942_2096 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 774089 4602872 Sama_0619 Shewanella amazonensis SB2B response regulator receiver protein YP_926497.1 772953 D 326297 CDS YP_926498.1 119773758 4602873 774196..775281 1 NC_008700.1 KEGG: sdn:Sden_0607 hypothetical protein; hypothetical protein 775281 4602873 Sama_0620 Shewanella amazonensis SB2B hypothetical protein YP_926498.1 774196 D 326297 CDS YP_926499.1 119773759 4602874 775291..775698 1 NC_008700.1 KEGG: sdn:Sden_0606 hypothetical protein; hypothetical protein 775698 4602874 Sama_0621 Shewanella amazonensis SB2B hypothetical protein YP_926499.1 775291 D 326297 CDS YP_926500.1 119773760 4602875 775744..777363 1 NC_008700.1 KEGG: sdn:Sden_3010 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 777363 4602875 Sama_0622 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926500.1 775744 D 326297 CDS YP_926501.1 119773761 4602876 777448..777702 1 NC_008700.1 KEGG: vpa:VP1367 putative transcriptional regulator, LysR family; hypothetical protein 777702 4602876 Sama_0623 Shewanella amazonensis SB2B hypothetical protein YP_926501.1 777448 D 326297 CDS YP_926502.1 119773762 4602877 777849..778052 1 NC_008700.1 hypothetical protein 778052 4602877 Sama_0624 Shewanella amazonensis SB2B hypothetical protein YP_926502.1 777849 D 326297 CDS YP_926503.1 119773763 4602878 complement(778135..778323) 1 NC_008700.1 KEGG: son:SO0974 hypothetical protein; hypothetical protein 778323 4602878 Sama_0625 Shewanella amazonensis SB2B hypothetical protein YP_926503.1 778135 R 326297 CDS YP_926504.1 119773764 4602879 complement(778448..779833) 1 NC_008700.1 KEGG: son:SO0975 hypothetical protein; hypothetical protein 779833 4602879 Sama_0626 Shewanella amazonensis SB2B hypothetical protein YP_926504.1 778448 R 326297 CDS YP_926505.1 119773765 4602880 complement(780003..780449) 1 NC_008700.1 hypothetical protein 780449 4602880 Sama_0627 Shewanella amazonensis SB2B hypothetical protein YP_926505.1 780003 R 326297 CDS YP_926506.1 119773766 4602881 780753..781187 1 NC_008700.1 KEGG: son:SO0977 transcriptional regulator, MarR family; MarR family transcriptional regulator 781187 4602881 Sama_0628 Shewanella amazonensis SB2B MarR family transcriptional regulator YP_926506.1 780753 D 326297 CDS YP_926507.1 119773767 4602882 781189..782403 1 NC_008700.1 KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 782403 4602882 Sama_0629 Shewanella amazonensis SB2B glycerol-3-phosphate dehydrogenase YP_926507.1 781189 D 326297 CDS YP_926508.1 119773768 4602883 782438..783592 1 NC_008700.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 783592 rumB 4602883 rumB Shewanella amazonensis SB2B 23S rRNA methyluridine methyltransferase YP_926508.1 782438 D 326297 CDS YP_926509.1 119773769 4602884 complement(783561..784757) 1 NC_008700.1 KEGG: son:SO0981 sensor histidine kinase; signal transduction histidine kinase-like protein 784757 4602884 Sama_0631 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926509.1 783561 R 326297 CDS YP_926510.1 119773770 4602885 complement(784754..785461) 1 NC_008700.1 KEGG: cps:CPS_3172 DNA-binding response regulator; response regulator receiver protein 785461 4602885 Sama_0632 Shewanella amazonensis SB2B response regulator receiver protein YP_926510.1 784754 R 326297 CDS YP_926511.1 119773771 4602886 complement(785446..785829) 1 NC_008700.1 hypothetical protein 785829 4602886 Sama_0633 Shewanella amazonensis SB2B hypothetical protein YP_926511.1 785446 R 326297 CDS YP_926512.1 119773772 4602887 complement(785838..786674) 1 NC_008700.1 KEGG: sde:Sde_0548 PAS/PAC sensor signal transduction histidine kinase; outer membrane protein V-like protein 786674 4602887 Sama_0634 Shewanella amazonensis SB2B outer membrane protein V-like protein YP_926512.1 785838 R 326297 CDS YP_926513.1 119773773 4602888 787020..792071 1 NC_008700.1 KEGG: son:SO4539 serine protease, subtilase family; serine protease 792071 4602888 Sama_0635 Shewanella amazonensis SB2B serine protease YP_926513.1 787020 D 326297 CDS YP_926514.1 119773774 4602889 792246..793391 1 NC_008700.1 KEGG: sdn:Sden_3160 chromate transporter; chromate transporter 793391 4602889 Sama_0636 Shewanella amazonensis SB2B chromate transporter YP_926514.1 792246 D 326297 CDS YP_926515.1 119773775 4602890 complement(793459..794064) 1 NC_008700.1 KEGG: son:SO1060 hypothetical protein; hypothetical protein 794064 4602890 Sama_0637 Shewanella amazonensis SB2B hypothetical protein YP_926515.1 793459 R 326297 CDS YP_926516.1 119773776 4602891 complement(794055..795434) 1 NC_008700.1 KEGG: son:SO1061 TPR domain protein; hypothetical protein 795434 4602891 Sama_0638 Shewanella amazonensis SB2B hypothetical protein YP_926516.1 794055 R 326297 CDS YP_926517.1 119773777 4602892 complement(795431..795955) 1 NC_008700.1 KEGG: son:SO1062 polypeptide deformylase; peptide deformylase 795955 4602892 Sama_0639 Shewanella amazonensis SB2B peptide deformylase YP_926517.1 795431 R 326297 CDS YP_926518.1 119773778 4602893 complement(795983..796207) 1 NC_008700.1 KEGG: son:SO1063 SlyX protein; SlyX protein 796207 4602893 Sama_0640 Shewanella amazonensis SB2B SlyX protein YP_926518.1 795983 R 326297 CDS YP_926519.1 119773779 4602894 complement(796210..797187) 1 NC_008700.1 KEGG: son:SO1064 hypothetical WD domain protein; hypothetical protein 797187 4602894 Sama_0641 Shewanella amazonensis SB2B hypothetical protein YP_926519.1 796210 R 326297 CDS YP_926520.1 119773780 4602895 797333..798097 1 NC_008700.1 KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 798097 4602895 Sama_0642 Shewanella amazonensis SB2B FKBP-type peptidyl-prolyl cis-trans isomerase FkpA YP_926520.1 797333 D 326297 CDS YP_926521.1 119773781 4602896 798239..799675 1 NC_008700.1 KEGG: vvy:VVA0728 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 799675 4602896 Sama_0643 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926521.1 798239 D 326297 CDS YP_926522.1 119773782 4602897 complement(799759..800724) 1 NC_008700.1 KEGG: son:SO3984 magnesium transporter, putative; magnesium transporter 800724 4602897 Sama_0644 Shewanella amazonensis SB2B magnesium transporter YP_926522.1 799759 R 326297 CDS YP_926523.1 119773783 4602898 800875..801249 1 NC_008700.1 KEGG: son:SO3983 hypothetical protein; hypothetical protein 801249 4602898 Sama_0645 Shewanella amazonensis SB2B hypothetical protein YP_926523.1 800875 D 326297 CDS YP_926524.1 119773784 4602899 complement(801294..801923) 1 NC_008700.1 KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; response regulator receiver protein 801923 4602899 Sama_0646 Shewanella amazonensis SB2B response regulator receiver protein YP_926524.1 801294 R 326297 CDS YP_926525.1 119773785 4602900 complement(801916..803628) 1 NC_008700.1 KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ 803628 4602900 Sama_0647 Shewanella amazonensis SB2B nitrate/nitrite sensor protein NarQ YP_926525.1 801916 R 326297 CDS YP_926526.1 119773786 4602901 803874..805277 1 NC_008700.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 805277 nrfA 4602901 nrfA Shewanella amazonensis SB2B cytochrome c552 YP_926526.1 803874 D 326297 CDS YP_926527.1 119773787 4602902 complement(805358..805897) 1 NC_008700.1 KEGG: son:SO0762 isochorismatase family protein; isochorismatase family protein 805897 4602902 Sama_0649 Shewanella amazonensis SB2B isochorismatase family protein YP_926527.1 805358 R 326297 CDS YP_926528.1 119773788 4602903 806138..806476 1 NC_008700.1 KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 806476 4602903 Sama_0650 Shewanella amazonensis SB2B nitrogen regulatory protein P-II YP_926528.1 806138 D 326297 CDS YP_926529.1 119773789 4602904 806488..807738 1 NC_008700.1 KEGG: sdn:Sden_2904 Rh-like protein/ammonium transporter; Rh-like protein/ammonium transporter 807738 4602904 Sama_0651 Shewanella amazonensis SB2B Rh-like protein/ammonium transporter YP_926529.1 806488 D 326297 CDS YP_926530.1 119773790 4602905 807898..808248 1 NC_008700.1 KEGG: sdn:Sden_2903 hypothetical protein; hypothetical protein 808248 4602905 Sama_0652 Shewanella amazonensis SB2B hypothetical protein YP_926530.1 807898 D 326297 CDS YP_926531.1 119773791 4602906 808329..809489 1 NC_008700.1 KEGG: son:SO0757 TPR domain protein; hypothetical protein 809489 4602906 Sama_0653 Shewanella amazonensis SB2B hypothetical protein YP_926531.1 808329 D 326297 CDS YP_926532.1 119773792 4602907 809748..811064 1 NC_008700.1 KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; putative methyl-accepting chemotaxis sensory transducer 811064 4602907 Sama_0654 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926532.1 809748 D 326297 CDS YP_926533.1 119773793 4602908 complement(811146..812402) 1 NC_008700.1 KEGG: son:SO1700 hypothetical protein; hypothetical protein 812402 4602908 Sama_0655 Shewanella amazonensis SB2B hypothetical protein YP_926533.1 811146 R 326297 CDS YP_926534.1 119773794 4602909 complement(812413..813270) 1 NC_008700.1 KEGG: son:SO1701 hypothetical protein; hypothetical protein 813270 4602909 Sama_0656 Shewanella amazonensis SB2B hypothetical protein YP_926534.1 812413 R 326297 CDS YP_926535.1 119773795 4602910 813803..814861 1 NC_008700.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 814861 4602910 Sama_0657 Shewanella amazonensis SB2B phospho-2-dehydro-3-deoxyheptonate aldolase YP_926535.1 813803 D 326297 CDS YP_926536.1 119773796 4602911 complement(814903..815079) 1 NC_008700.1 KEGG: son:SO0755 hypothetical protein; hypothetical protein 815079 4602911 Sama_0658 Shewanella amazonensis SB2B hypothetical protein YP_926536.1 814903 R 326297 CDS YP_926537.1 119773797 4602912 815502..817286 1 NC_008700.1 KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 817286 4602912 Sama_0659 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_926537.1 815502 D 326297 CDS YP_926538.1 119773798 4602913 817355..817615 1 NC_008700.1 KEGG: son:SO0753 hypothetical protein; hypothetical protein 817615 4602913 Sama_0660 Shewanella amazonensis SB2B hypothetical protein YP_926538.1 817355 D 326297 CDS YP_926539.1 119773799 4602914 complement(817622..817813) 1 NC_008700.1 KEGG: son:SO0752 hypothetical protein; hypothetical protein 817813 4602914 Sama_0661 Shewanella amazonensis SB2B hypothetical protein YP_926539.1 817622 R 326297 CDS YP_926540.1 119773800 4602915 818050..818658 1 NC_008700.1 KEGG: son:SO0748 hypothetical protein; hypothetical protein 818658 4602915 Sama_0662 Shewanella amazonensis SB2B hypothetical protein YP_926540.1 818050 D 326297 CDS YP_926541.1 119773801 4602916 818702..819484 1 NC_008700.1 KEGG: son:SO0747 ferredoxin--NADP reductase; ferredoxin--NADP reductase 819484 4602916 Sama_0663 Shewanella amazonensis SB2B ferredoxin--NADP reductase YP_926541.1 818702 D 326297 CDS YP_926542.1 119773802 4602917 819503..820105 1 NC_008700.1 KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase family protein 820105 4602917 Sama_0664 Shewanella amazonensis SB2B glutathione S-transferase family protein YP_926542.1 819503 D 326297 CDS YP_926543.1 119773803 4602918 complement(820102..820605) 1 NC_008700.1 KEGG: son:SO0745 hypothetical protein; hypothetical protein 820605 4602918 Sama_0665 Shewanella amazonensis SB2B hypothetical protein YP_926543.1 820102 R 326297 CDS YP_926544.1 119773804 4602919 820843..821850 1 NC_008700.1 KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; iron(III) ABC transporter periplasmic iron(III)-binding protein 821850 4602919 Sama_0666 Shewanella amazonensis SB2B iron(III) ABC transporter periplasmic iron(III)-binding protein YP_926544.1 820843 D 326297 CDS YP_926545.1 119773805 4602920 821910..823538 1 NC_008700.1 KEGG: son:SO0743 iron(III) ABC transporter, permease protein; iron(III) ABC transporter permease 823538 4602920 Sama_0667 Shewanella amazonensis SB2B iron(III) ABC transporter permease YP_926545.1 821910 D 326297 CDS YP_926546.1 119773806 4602921 823540..824565 1 NC_008700.1 KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; iron(III) ABC transporter ATP-binding protein 824565 4602921 Sama_0668 Shewanella amazonensis SB2B iron(III) ABC transporter ATP-binding protein YP_926546.1 823540 D 326297 CDS YP_926547.1 119773807 4602922 824619..826325 1 NC_008700.1 KEGG: son:SO0741 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 826325 4602922 Sama_0669 Shewanella amazonensis SB2B gamma-glutamyltransferase YP_926547.1 824619 D 326297 CDS YP_926548.1 119773808 4602923 826433..827368 1 NC_008700.1 KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; melanin biosynthesis protein TyrA 827368 4602923 Sama_0670 Shewanella amazonensis SB2B melanin biosynthesis protein TyrA YP_926548.1 826433 D 326297 CDS YP_926549.1 119773809 4602924 complement(827431..827895) 1 NC_008700.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 827895 4602924 Sama_0671 Shewanella amazonensis SB2B arginine repressor YP_926549.1 827431 R 326297 CDS YP_926550.1 119773810 4602925 828182..829117 1 NC_008700.1 oxidizes malate to oxaloacetate; malate dehydrogenase 829117 4602925 Sama_0672 Shewanella amazonensis SB2B malate dehydrogenase YP_926550.1 828182 D 326297 CDS YP_926551.1 119773811 4602926 829291..830355 1 NC_008700.1 KEGG: ppr:PBPRB1679 hypothetical multidrug resistance protein; multidrug resistance protein 830355 4602926 Sama_0673 Shewanella amazonensis SB2B multidrug resistance protein YP_926551.1 829291 D 326297 CDS YP_926552.1 119773812 4602927 830358..831434 1 NC_008700.1 KEGG: ppr:PBPRB1678 hypothetical periplasmic linker protein; linker protein 831434 4602927 Sama_0674 Shewanella amazonensis SB2B linker protein YP_926552.1 830358 D 326297 CDS YP_926553.1 119773813 4602928 831444..834530 1 NC_008700.1 KEGG: ppr:PBPRB1677 putative transporter, AcrB/D/F family; AcrB/AcrD/AcrF family transporter 834530 4602928 Sama_0675 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family transporter YP_926553.1 831444 D 326297 CDS YP_926554.1 119773814 4602929 834840..835175 1 NC_008700.1 KEGG: tdn:Tmden_1847 hypothetical protein; hypothetical protein 835175 4602929 Sama_0676 Shewanella amazonensis SB2B hypothetical protein YP_926554.1 834840 D 326297 CDS YP_926555.1 119773815 4602930 835288..837207 1 NC_008700.1 KEGG: son:SO3797 peptidase, U32 family; U32 family peptidase 837207 4602930 Sama_0677 Shewanella amazonensis SB2B U32 family peptidase YP_926555.1 835288 D 326297 CDS YP_926556.1 119773816 4602931 837351..837728 1 NC_008700.1 KEGG: son:SO3796 hypothetical protein; hypothetical protein 837728 4602931 Sama_0678 Shewanella amazonensis SB2B hypothetical protein YP_926556.1 837351 D 326297 CDS YP_926557.1 119773817 4602932 838103..841132 1 NC_008700.1 KEGG: son:SO1309 hypothetical TonB-dependent receptor; putative TonB-dependent receptor 841132 4602932 Sama_0679 Shewanella amazonensis SB2B putative TonB-dependent receptor YP_926557.1 838103 D 326297 CDS YP_926558.1 119773818 4602933 complement(841258..842772) 1 NC_008700.1 KEGG: son:SO4705 transcriptional regulator, putative; XRE family transcriptional regulator 842772 4602933 Sama_0680 Shewanella amazonensis SB2B XRE family transcriptional regulator YP_926558.1 841258 R 326297 CDS YP_926559.1 119773819 4602934 842929..843501 1 NC_008700.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 843501 4602934 Sama_0681 Shewanella amazonensis SB2B malate synthase YP_926559.1 842929 D 326297 CDS YP_926560.1 119773820 4602935 complement(843635..844309) 1 NC_008700.1 KEGG: eca:ECA2791 putative glutathione S-transferase; putative glutathione S-transferase 844309 4602935 Sama_0682 Shewanella amazonensis SB2B putative glutathione S-transferase YP_926560.1 843635 R 326297 CDS YP_926561.1 119773821 4602936 complement(844362..844652) 1 NC_008700.1 KEGG: ppr:PBPRB1101 hypothetical protein; hypothetical protein 844652 4602936 Sama_0683 Shewanella amazonensis SB2B hypothetical protein YP_926561.1 844362 R 326297 CDS YP_926562.1 119773822 4602937 complement(844739..846538) 1 NC_008700.1 KEGG: son:SO1388 aminopeptidase P, putative; aminopeptidase P 846538 4602937 Sama_0684 Shewanella amazonensis SB2B aminopeptidase P YP_926562.1 844739 R 326297 CDS YP_926563.1 119773823 4602938 846844..848097 1 NC_008700.1 KEGG: cps:CPS_1700 hypothetical protein; hypothetical protein 848097 4602938 Sama_0685 Shewanella amazonensis SB2B hypothetical protein YP_926563.1 846844 D 326297 CDS YP_926564.1 119773824 4602939 848184..848972 1 NC_008700.1 KEGG: son:SO1389 ROK family protein; ROK family protein 848972 4602939 Sama_0686 Shewanella amazonensis SB2B ROK family protein YP_926564.1 848184 D 326297 CDS YP_926565.1 119773825 4602940 complement(849027..851735) 1 NC_008700.1 KEGG: ava:Ava_4314 ankyrin; hypothetical protein 851735 4602940 Sama_0687 Shewanella amazonensis SB2B hypothetical protein YP_926565.1 849027 R 326297 CDS YP_926566.1 119773826 4602941 852263..853474 1 NC_008700.1 KEGG: sdn:Sden_0888 peptidase M24; peptidase M24 853474 4602941 Sama_0688 Shewanella amazonensis SB2B peptidase M24 YP_926566.1 852263 D 326297 CDS YP_926567.1 119773827 4602942 complement(853533..854003) 1 NC_008700.1 KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidyl-prolyl cis-trans isomerase 854003 4602942 Sama_0689 Shewanella amazonensis SB2B FKBP-type peptidyl-prolyl cis-trans isomerase YP_926567.1 853533 R 326297 CDS YP_926568.1 119773828 4602943 complement(854104..854457) 1 NC_008700.1 KEGG: cps:CPS_0148 cold-shock DNA-binding domain family protein; cold shock DNA-binding domain-containing protein 854457 4602943 Sama_0690 Shewanella amazonensis SB2B cold shock DNA-binding domain-containing protein YP_926568.1 854104 R 326297 CDS YP_926569.1 119773829 4602944 complement(854454..855599) 1 NC_008700.1 KEGG: son:SO1396 hypothetical protein; hypothetical protein 855599 4602944 Sama_0691 Shewanella amazonensis SB2B hypothetical protein YP_926569.1 854454 R 326297 CDS YP_926570.1 119773830 4602945 complement(855694..856635) 1 NC_008700.1 KEGG: son:SO3758 hypothetical protein; hypothetical protein 856635 4602945 Sama_0692 Shewanella amazonensis SB2B hypothetical protein YP_926570.1 855694 R 326297 CDS YP_926571.1 119773831 4602946 856788..857765 1 NC_008700.1 KEGG: son:SO3757 RuBisCo operon transcriptional regulator; RuBisCo operon transcriptional regulator 857765 4602946 Sama_0693 Shewanella amazonensis SB2B RuBisCo operon transcriptional regulator YP_926571.1 856788 D 326297 CDS YP_926572.1 119773832 4602947 858008..858559 1 NC_008700.1 KEGG: vpa:VP2004 hypothetical protein; hypothetical protein 858559 4602947 Sama_0694 Shewanella amazonensis SB2B hypothetical protein YP_926572.1 858008 D 326297 CDS YP_926573.1 119773833 4602948 858948..859550 1 NC_008700.1 KEGG: son:SO3588 gpr1/fun34/YaaH family protein; gpr1/fun34/YaaH family protein 859550 4602948 Sama_0695 Shewanella amazonensis SB2B gpr1/fun34/YaaH family protein YP_926573.1 858948 D 326297 CDS YP_926574.1 119773834 4602949 complement(859635..860246) 1 NC_008700.1 KEGG: vch:VC2747 hypothetical protein; hypothetical protein 860246 4602949 Sama_0696 Shewanella amazonensis SB2B hypothetical protein YP_926574.1 859635 R 326297 CDS YP_926575.1 119773835 4602950 complement(860337..861791) 1 NC_008700.1 KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; outer membrane protein and related peptidoglycan-associated (LipO)protein 861791 4602950 Sama_0697 Shewanella amazonensis SB2B outer membrane protein and related peptidoglycan-associated (LipO)protein YP_926575.1 860337 R 326297 CDS YP_926576.1 119773836 4602951 complement(861843..863288) 1 NC_008700.1 KEGG: nwi:Nwi_1814 OmpA/MotB; Outer membrane protein-related peptidoglycan-associated (lipo)protein 863288 4602951 Sama_0698 Shewanella amazonensis SB2B Outer membrane protein-related peptidoglycan-associated (lipo)protein YP_926576.1 861843 R 326297 CDS YP_926577.1 119773837 4602952 863425..864027 1 NC_008700.1 KEGG: ilo:IL0155 response regulator, LuxR family (CheY-HTH); response regulator receiver protein 864027 4602952 Sama_0699 Shewanella amazonensis SB2B response regulator receiver protein YP_926577.1 863425 D 326297 CDS YP_926578.1 119773838 4602953 864152..864424 1 NC_008700.1 KEGG: ilo:IL0910 Flp/Fap pilin homolog; Flp/Fap pilin-like protein 864424 4602953 Sama_0700 Shewanella amazonensis SB2B Flp/Fap pilin-like protein YP_926578.1 864152 D 326297 CDS YP_926579.1 119773839 4602954 864499..864813 1 NC_008700.1 KEGG: bxe:Bxe_B2914 hypothetical protein; hypothetical protein 864813 4602954 Sama_0701 Shewanella amazonensis SB2B hypothetical protein YP_926579.1 864499 D 326297 CDS YP_926580.1 119773840 4602955 864848..866221 1 NC_008700.1 KEGG: ilo:IL0909 uncharacterized secreted protein; hypothetical protein 866221 4602955 Sama_0702 Shewanella amazonensis SB2B hypothetical protein YP_926580.1 864848 D 326297 CDS YP_926581.1 119773841 4602956 866231..867118 1 NC_008700.1 KEGG: bxe:Bxe_B2916 hypothetical protein; hypothetical protein 867118 4602956 Sama_0703 Shewanella amazonensis SB2B hypothetical protein YP_926581.1 866231 D 326297 CDS YP_926582.1 119773842 4602957 867115..867789 1 NC_008700.1 hypothetical protein 867789 4602957 Sama_0704 Shewanella amazonensis SB2B hypothetical protein YP_926582.1 867115 D 326297 CDS YP_926583.1 119773843 4602958 867786..867980 1 NC_008700.1 hypothetical protein 867980 4602958 Sama_0705 Shewanella amazonensis SB2B hypothetical protein YP_926583.1 867786 D 326297 CDS YP_926584.1 119773844 4602959 868003..868899 1 NC_008700.1 KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB; Flp pilus assembly protein CpaB-like protein 868899 4602959 Sama_0706 Shewanella amazonensis SB2B Flp pilus assembly protein CpaB-like protein YP_926584.1 868003 D 326297 CDS YP_926585.1 119773845 4602960 868944..870215 1 NC_008700.1 KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; putative type II and III secretion system outermembrane protein, secretin 870215 4602960 Sama_0707 Shewanella amazonensis SB2B putative type II and III secretion system outermembrane protein, secretin YP_926585.1 868944 D 326297 CDS YP_926586.1 119773846 4602961 870224..871993 1 NC_008700.1 KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E; type II/IV secretion system protein E 871993 4602961 Sama_0708 Shewanella amazonensis SB2B type II/IV secretion system protein E YP_926586.1 870224 D 326297 CDS YP_926587.1 119773847 4602962 871986..872837 1 NC_008700.1 KEGG: bxe:Bxe_B2922 putative type II secretion system protein F; putative type II secretion system protein F 872837 4602962 Sama_0709 Shewanella amazonensis SB2B putative type II secretion system protein F YP_926587.1 871986 D 326297 CDS YP_926588.1 119773848 4602963 872846..873709 1 NC_008700.1 KEGG: bxe:Bxe_B2923 putative type II secretion system protein F; putative type II secretion system protein F 873709 4602963 Sama_0710 Shewanella amazonensis SB2B putative type II secretion system protein F YP_926588.1 872846 D 326297 CDS YP_926589.1 119773849 4602964 873711..874055 1 NC_008700.1 KEGG: bba:Bd0471 putative secreted protein; hypothetical protein 874055 4602964 Sama_0711 Shewanella amazonensis SB2B hypothetical protein YP_926589.1 873711 D 326297 CDS YP_926590.1 119773850 4602965 874043..874528 1 NC_008700.1 KEGG: mac:MA1970 hypothetical protein; hypothetical protein 874528 4602965 Sama_0712 Shewanella amazonensis SB2B hypothetical protein YP_926590.1 874043 D 326297 CDS YP_926591.1 119773851 4602966 874525..875211 1 NC_008700.1 KEGG: bxe:Bxe_B2925 hypothetical protein; hypothetical protein 875211 4602966 Sama_0713 Shewanella amazonensis SB2B hypothetical protein YP_926591.1 874525 D 326297 CDS YP_926592.1 119773852 4602967 875229..879392 1 NC_008700.1 KEGG: hwa:HQ3601A cell surface calcium-binding acidic-repeat protein; hypothetical protein 879392 4602967 Sama_0714 Shewanella amazonensis SB2B hypothetical protein YP_926592.1 875229 D 326297 CDS YP_926593.1 119773853 4602968 879449..879919 1 NC_008700.1 hypothetical protein 879919 4602968 Sama_0715 Shewanella amazonensis SB2B hypothetical protein YP_926593.1 879449 D 326297 CDS YP_926594.1 119773854 4602969 879995..880399 1 NC_008700.1 hypothetical protein 880399 4602969 Sama_0716 Shewanella amazonensis SB2B hypothetical protein YP_926594.1 879995 D 326297 CDS YP_926595.1 119773855 4602970 880485..882251 1 NC_008700.1 KEGG: ilo:IL0291 hypothetical protein; hypothetical protein 882251 4602970 Sama_0717 Shewanella amazonensis SB2B hypothetical protein YP_926595.1 880485 D 326297 CDS YP_926596.1 119773856 4602971 882536..883927 1 NC_008700.1 hypothetical protein 883927 4602971 Sama_0718 Shewanella amazonensis SB2B hypothetical protein YP_926596.1 882536 D 326297 CDS YP_926597.1 119773857 4602972 884021..884701 1 NC_008700.1 hypothetical protein 884701 4602972 Sama_0719 Shewanella amazonensis SB2B hypothetical protein YP_926597.1 884021 D 326297 CDS YP_926598.1 119773858 4602973 884742..885197 1 NC_008700.1 hypothetical protein 885197 4602973 Sama_0720 Shewanella amazonensis SB2B hypothetical protein YP_926598.1 884742 D 326297 CDS YP_926599.1 119773859 4602974 885318..886166 1 NC_008700.1 KEGG: sdn:Sden_0706 protein of unknown function DUF583; cell shape determination protein CcmA 886166 4602974 Sama_0721 Shewanella amazonensis SB2B cell shape determination protein CcmA YP_926599.1 885318 D 326297 CDS YP_926600.1 119773860 4602975 complement(886334..887218) 1 NC_008700.1 KEGG: ilo:IL1305 UspA-related nucleotide-binding protein; hypothetical protein 887218 4602975 Sama_0722 Shewanella amazonensis SB2B hypothetical protein YP_926600.1 886334 R 326297 CDS YP_926601.1 119773861 4602976 complement(887421..888908) 1 NC_008700.1 KEGG: son:SO3754 hypothetical protein; hypothetical protein 888908 4602976 Sama_0723 Shewanella amazonensis SB2B hypothetical protein YP_926601.1 887421 R 326297 CDS YP_926602.1 119773862 4602977 complement(888905..890341) 1 NC_008700.1 KEGG: tfu:Tfu_2363 putative zinc proteinase; Zn-dependent peptidase-like protein 890341 4602977 Sama_0724 Shewanella amazonensis SB2B Zn-dependent peptidase-like protein YP_926602.1 888905 R 326297 CDS YP_926603.1 119773863 4602978 890446..891270 1 NC_008700.1 KEGG: son:SO3749 hypothetical protein; hypothetical protein 891270 4602978 Sama_0725 Shewanella amazonensis SB2B hypothetical protein YP_926603.1 890446 D 326297 CDS YP_926604.1 119773864 4602979 complement(891361..892275) 1 NC_008700.1 KEGG: sdn:Sden_0707 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG protein 892275 4602979 Sama_0726 Shewanella amazonensis SB2B ErfK/YbiS/YcfS/YnhG protein YP_926604.1 891361 R 326297 CDS YP_926605.1 119773865 4602980 complement(892404..893924) 1 NC_008700.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 893924 4602980 Sama_0727 Shewanella amazonensis SB2B anaerobic nitric oxide reductase transcriptional regulator YP_926605.1 892404 R 326297 CDS YP_926606.1 119773866 4602981 complement(894026..896302) 1 NC_008700.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 896302 4602981 Sama_0728 Shewanella amazonensis SB2B putative nitric oxide reductase (subunit B) transmembrane protein YP_926606.1 894026 R 326297 CDS YP_926607.1 119773867 4602982 896674..898392 1 NC_008700.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 898392 4602982 Sama_0729 Shewanella amazonensis SB2B potassium/proton antiporter YP_926607.1 896674 D 326297 CDS YP_926608.1 119773868 4602983 complement(898426..899373) 1 NC_008700.1 KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 899373 4602983 Sama_0730 Shewanella amazonensis SB2B lipid A biosynthesis lauroyl acyltransferase YP_926608.1 898426 R 326297 CDS YP_926609.1 119773869 4602984 899468..900898 1 NC_008700.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 900898 4602984 Sama_0731 Shewanella amazonensis SB2B bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_926609.1 899468 D 326297 CDS YP_926610.1 119773870 4602985 900898..901779 1 NC_008700.1 KEGG: son:SO3744 hypothetical protein; hypothetical protein 901779 4602985 Sama_0732 Shewanella amazonensis SB2B hypothetical protein YP_926610.1 900898 D 326297 CDS YP_926611.1 119773871 4602986 901924..902412 1 NC_008700.1 KEGG: son:SO3743 transcriptional regulator, TetR family; TetR family transcriptional regulator 902412 4602986 Sama_0733 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_926611.1 901924 D 326297 CDS YP_926612.1 119773872 4602987 complement(902466..902732) 1 NC_008700.1 KEGG: cps:CPS_4118 hypothetical protein; hypothetical protein 902732 4602987 Sama_0734 Shewanella amazonensis SB2B hypothetical protein YP_926612.1 902466 R 326297 CDS YP_926613.1 119773873 4602988 903011..903628 1 NC_008700.1 KEGG: hch:HCH_04210 hypothetical protein; hypothetical protein 903628 4602988 Sama_0735 Shewanella amazonensis SB2B hypothetical protein YP_926613.1 903011 D 326297 CDS YP_926614.1 119773874 4602989 903625..904713 1 NC_008700.1 KEGG: jan:Jann_3255 rhomboid-like protein; hypothetical protein 904713 4602989 Sama_0736 Shewanella amazonensis SB2B hypothetical protein YP_926614.1 903625 D 326297 CDS YP_926615.1 119773875 4602990 complement(904781..906094) 1 NC_008700.1 KEGG: sdn:Sden_0711 putative esterase; putative esterase 906094 4602990 Sama_0737 Shewanella amazonensis SB2B putative esterase YP_926615.1 904781 R 326297 CDS YP_926616.1 119773876 4602991 906249..906671 1 NC_008700.1 KEGG: son:SO0452 thioredoxin 2; thioredoxin 2 906671 4602991 Sama_0738 Shewanella amazonensis SB2B thioredoxin 2 YP_926616.1 906249 D 326297 CDS YP_926617.1 119773877 4602992 906748..907623 1 NC_008700.1 KEGG: son:SO1154 hypothetical protein; hypothetical protein 907623 4602992 Sama_0739 Shewanella amazonensis SB2B hypothetical protein YP_926617.1 906748 D 326297 CDS YP_926618.1 119773878 4602993 907739..908476 1 NC_008700.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 908476 mtgA 4602993 mtgA Shewanella amazonensis SB2B monofunctional biosynthetic peptidoglycan transglycosylase YP_926618.1 907739 D 326297 CDS YP_926619.1 119773879 4602994 complement(908537..909067) 1 NC_008700.1 KEGG: pae:PA0085 hypothetical protein; hemolysin-coregulated protein 909067 4602994 Sama_0741 Shewanella amazonensis SB2B hemolysin-coregulated protein YP_926619.1 908537 R 326297 CDS YP_926620.1 119773880 4602995 909293..909634 1 NC_008700.1 hypothetical protein 909634 4602995 Sama_0742 Shewanella amazonensis SB2B hypothetical protein YP_926620.1 909293 D 326297 CDS YP_926621.1 119773881 4602996 909754..910173 1 NC_008700.1 KEGG: pae:PA2706 hypothetical protein; hypothetical protein 910173 4602996 Sama_0743 Shewanella amazonensis SB2B hypothetical protein YP_926621.1 909754 D 326297 CDS YP_926622.1 119773882 4602997 complement(910321..915498) 1 NC_008700.1 KEGG: son:SO4539 serine protease, subtilase family; serine protease 915498 4602997 Sama_0744 Shewanella amazonensis SB2B serine protease YP_926622.1 910321 R 326297 CDS YP_926623.1 119773883 4602998 complement(915907..918123) 1 NC_008700.1 KEGG: son:SO0725 catalase/peroxidase HPI; catalase 918123 4602998 Sama_0745 Shewanella amazonensis SB2B catalase YP_926623.1 915907 R 326297 CDS YP_926624.1 119773884 4602999 918563..919456 1 NC_008700.1 KEGG: mag:amb2742 permease of the drug/metabolite transporter superfamily; DMT family permease 919456 4602999 Sama_0746 Shewanella amazonensis SB2B DMT family permease YP_926624.1 918563 D 326297 CDS YP_926625.1 119773885 4603000 919576..923439 1 NC_008700.1 KEGG: xcb:XC_1756 two-component system sensor protein; signal transduction histidine kinase-like protein 923439 4603000 Sama_0747 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926625.1 919576 D 326297 CDS YP_926626.1 119773886 4603001 923436..924374 1 NC_008700.1 KEGG: pat:Patl_2089 diguanylate cyclase; response regulator receiver protein 924374 4603001 Sama_0748 Shewanella amazonensis SB2B response regulator receiver protein YP_926626.1 923436 D 326297 CDS YP_926627.1 119773887 4603002 complement(924455..924718) 1 NC_008700.1 KEGG: son:SO0721 hypothetical protein; hypothetical protein 924718 4603002 Sama_0749 Shewanella amazonensis SB2B hypothetical protein YP_926627.1 924455 R 326297 CDS YP_926628.1 119773888 4603003 complement(924874..925872) 1 NC_008700.1 KEGG: son:SO1771.2 hypothetical catalase; catalase-like protein 925872 4603003 Sama_0750 Shewanella amazonensis SB2B catalase-like protein YP_926628.1 924874 R 326297 CDS YP_926629.1 119773889 4603004 926250..927581 1 NC_008700.1 KEGG: vfi:VF0971 GTP-binding protein HflX; GTP-binding protein HflX 927581 4603004 Sama_0751 Shewanella amazonensis SB2B GTP-binding protein HflX YP_926629.1 926250 D 326297 CDS YP_926630.1 119773890 4603005 complement(927691..929094) 1 NC_008700.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 929094 4603005 Sama_0752 Shewanella amazonensis SB2B ATP-dependent RNA helicase DbpA YP_926630.1 927691 R 326297 CDS YP_926631.1 119773891 4603006 929596..931323 1 NC_008700.1 KEGG: pfo:Pfl_2272 hypothetical protein; hypothetical protein 931323 4603006 Sama_0753 Shewanella amazonensis SB2B hypothetical protein YP_926631.1 929596 D 326297 CDS YP_926632.1 119773892 4603007 complement(931615..933336) 1 NC_008700.1 KEGG: ava:Ava_B0104 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 933336 4603007 Sama_0754 Shewanella amazonensis SB2B sulfate transporter/antisigma-factor antagonist STAS YP_926632.1 931615 R 326297 CDS YP_926633.1 119773893 4603008 complement(933520..935586) 1 NC_008700.1 KEGG: son:SO4537 peptidase, putative; peptidase 935586 4603008 Sama_0755 Shewanella amazonensis SB2B peptidase YP_926633.1 933520 R 326297 CDS YP_926634.1 119773894 4603009 complement(935916..936875) 1 NC_008700.1 hypothetical protein 936875 4603009 Sama_0756 Shewanella amazonensis SB2B hypothetical protein YP_926634.1 935916 R 326297 CDS YP_926635.1 119773895 4606037 complement(938190..941930) 1 NC_008700.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 941930 metH 4606037 metH Shewanella amazonensis SB2B B12-dependent methionine synthase YP_926635.1 938190 R 326297 CDS YP_926636.1 119773896 4603011 942305..942931 1 NC_008700.1 KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; alpha-ribazole-5'-phosphate phosphatase 942931 4603011 Sama_0759 Shewanella amazonensis SB2B alpha-ribazole-5'-phosphate phosphatase YP_926636.1 942305 D 326297 CDS YP_926637.1 119773897 4603012 943264..944079 1 NC_008700.1 KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; iron-compound ABC transporter ATP-binding protein 944079 4603012 Sama_0760 Shewanella amazonensis SB2B iron-compound ABC transporter ATP-binding protein YP_926637.1 943264 D 326297 CDS YP_926638.1 119773898 4603013 944076..945119 1 NC_008700.1 KEGG: son:SO1034 iron-compound ABC transporter, permease protein; iron-compound ABC transporter permease 945119 4603013 Sama_0761 Shewanella amazonensis SB2B iron-compound ABC transporter permease YP_926638.1 944076 D 326297 CDS YP_926639.1 119773899 4603014 945129..946163 1 NC_008700.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 946163 cobT 4603014 cobT Shewanella amazonensis SB2B nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_926639.1 945129 D 326297 CDS YP_926640.1 119773900 4603015 946177..946959 1 NC_008700.1 KEGG: son:SO1036 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 946959 4603015 Sama_0763 Shewanella amazonensis SB2B cobalamin 5'-phosphate synthase YP_926640.1 946177 D 326297 CDS YP_926641.1 119773901 4603016 946956..947501 1 NC_008700.1 KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobinamide kinase/cobinamide phosphate guanylyltransferase 947501 4603016 Sama_0764 Shewanella amazonensis SB2B cobinamide kinase/cobinamide phosphate guanylyltransferase YP_926641.1 946956 D 326297 CDS YP_926642.1 119773902 4603017 947505..949013 1 NC_008700.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 949013 4603017 Sama_0765 Shewanella amazonensis SB2B cobyric acid synthase YP_926642.1 947505 D 326297 CDS YP_926643.1 119773903 4603018 949035..949634 1 NC_008700.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 949634 4603018 Sama_0766 Shewanella amazonensis SB2B cob(I)yrinic acid a,c-diamide adenosyltransferase YP_926643.1 949035 D 326297 CDS YP_926644.1 119773904 4603019 950251..951891 1 NC_008700.1 KEGG: pae:PA2920 probable chemotaxis transducer; putative methyl-accepting chemotaxis sensory transducer 951891 4603019 Sama_0767 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926644.1 950251 D 326297 CDS YP_926645.1 119773905 4603020 complement(951945..952535) 1 NC_008700.1 KEGG: son:SO1187 hypothetical protein; hypothetical protein 952535 4603020 Sama_0768 Shewanella amazonensis SB2B hypothetical protein YP_926645.1 951945 R 326297 CDS YP_926646.1 119773906 4603021 952789..954165 1 NC_008700.1 KEGG: sdn:Sden_0656 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 954165 4603021 Sama_0769 Shewanella amazonensis SB2B UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_926646.1 952789 D 326297 CDS YP_926647.1 119773907 4603022 954211..954852 1 NC_008700.1 KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase 954852 4603022 Sama_0770 Shewanella amazonensis SB2B aromatic acid decarboxylase YP_926647.1 954211 D 326297 CDS YP_926648.1 119773908 4603023 954860..955390 1 NC_008700.1 KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 955390 4603023 Sama_0771 Shewanella amazonensis SB2B hypoxanthine phosphoribosyltransferase YP_926648.1 954860 D 326297 CDS YP_926649.1 119773909 4603024 955486..956445 1 NC_008700.1 KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 956445 4603024 Sama_0772 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_926649.1 955486 D 326297 CDS YP_926650.1 119773910 4603025 956447..957217 1 NC_008700.1 KEGG: sdn:Sden_0652 ABC-2; ABC-type polysaccharide/polyol phosphate export systems permease 957217 4603025 Sama_0773 Shewanella amazonensis SB2B ABC-type polysaccharide/polyol phosphate export systems permease YP_926650.1 956447 D 326297 CDS YP_926651.1 119773911 4603026 complement(957265..957765) 1 NC_008700.1 KEGG: son:SO0868 hypothetical protein; hypothetical protein 957765 4603026 Sama_0774 Shewanella amazonensis SB2B hypothetical protein YP_926651.1 957265 R 326297 CDS YP_926652.1 119773912 4603027 complement(957957..958802) 1 NC_008700.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 958802 panC 4603027 panC Shewanella amazonensis SB2B pantoate--beta-alanine ligase YP_926652.1 957957 R 326297 CDS YP_926653.1 119773913 4603028 complement(958810..959649) 1 NC_008700.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 959649 panB 4603028 panB Shewanella amazonensis SB2B 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_926653.1 958810 R 326297 CDS YP_926654.1 119773914 4603029 complement(959663..960151) 1 NC_008700.1 KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase 960151 4603029 Sama_0777 Shewanella amazonensis SB2B 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase YP_926654.1 959663 R 326297 CDS YP_926655.1 119773915 4603030 complement(960154..961428) 1 NC_008700.1 KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); tRNA nucleotidyltransferase 961428 4603030 Sama_0778 Shewanella amazonensis SB2B tRNA nucleotidyltransferase YP_926655.1 960154 R 326297 CDS YP_926656.1 119773916 4603031 complement(961689..962561) 1 NC_008700.1 KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamyl-tRNA synthetase 962561 4603031 Sama_0779 Shewanella amazonensis SB2B glutamyl-tRNA synthetase YP_926656.1 961689 R 326297 CDS YP_926657.1 119773917 4603032 complement(962633..963076) 1 NC_008700.1 KEGG: son:SO0874 DnaK suppressor protein; TraR/DksA family transcriptional regulator 963076 4603032 Sama_0780 Shewanella amazonensis SB2B TraR/DksA family transcriptional regulator YP_926657.1 962633 R 326297 CDS YP_926658.1 119773918 4603033 complement(963235..963948) 1 NC_008700.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 963948 4603033 Sama_0781 Shewanella amazonensis SB2B sugar fermentation stimulation protein A YP_926658.1 963235 R 326297 CDS YP_926659.1 119773919 4603034 964251..965534 1 NC_008700.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 965534 4603034 Sama_0782 Shewanella amazonensis SB2B aminopeptidase B YP_926659.1 964251 D 326297 CDS YP_926660.1 119773920 4603035 complement(965648..967426) 1 NC_008700.1 KEGG: sdn:Sden_0809 GGDEF domain protein; diguanylate cyclase 967426 4603035 Sama_0783 Shewanella amazonensis SB2B diguanylate cyclase YP_926660.1 965648 R 326297 CDS YP_926661.1 119773921 4603036 complement(967398..967634) 1 NC_008700.1 KEGG: sdn:Sden_0807 hypothetical protein; hypothetical protein 967634 4603036 Sama_0784 Shewanella amazonensis SB2B hypothetical protein YP_926661.1 967398 R 326297 CDS YP_926662.1 119773922 4603037 complement(967645..968490) 1 NC_008700.1 KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 968490 4603037 Sama_0785 Shewanella amazonensis SB2B uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_926662.1 967645 R 326297 CDS YP_926663.1 119773923 4603038 complement(968560..969069) 1 NC_008700.1 KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase; acetyltransferase 969069 4603038 Sama_0786 Shewanella amazonensis SB2B acetyltransferase YP_926663.1 968560 R 326297 CDS YP_926664.1 119773924 4603039 complement(969066..970403) 1 NC_008700.1 KEGG: sdn:Sden_0804 peptidase A1, pepsin; peptidase A1, pepsin 970403 4603039 Sama_0787 Shewanella amazonensis SB2B peptidase A1, pepsin YP_926664.1 969066 R 326297 CDS YP_926665.1 119773925 4603040 complement(970492..971304) 1 NC_008700.1 KEGG: hch:HCH_03990 predicted transcriptional regulator; transcriptional regulator 971304 4603040 Sama_0788 Shewanella amazonensis SB2B transcriptional regulator YP_926665.1 970492 R 326297 CDS YP_926666.1 119773926 4603041 971562..972980 1 NC_008700.1 KEGG: hch:HCH_01841 aspartate ammonia-lyase; aspartate ammonia-lyase 972980 4603041 Sama_0789 Shewanella amazonensis SB2B aspartate ammonia-lyase YP_926666.1 971562 D 326297 CDS YP_926667.1 119773927 4603042 complement(973085..975946) 1 NC_008700.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 975946 valS 4603042 valS Shewanella amazonensis SB2B valyl-tRNA synthetase YP_926667.1 973085 R 326297 CDS YP_926668.1 119773928 4603043 complement(975962..976417) 1 NC_008700.1 KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III subunit chi 976417 4603043 Sama_0791 Shewanella amazonensis SB2B DNA polymerase III subunit chi YP_926668.1 975962 R 326297 CDS YP_926669.1 119773929 4603044 complement(976548..977186) 1 NC_008700.1 KEGG: vfi:VFA0088 transcriptional regulator; TetR family transcriptional regulator 977186 4603044 Sama_0792 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_926669.1 976548 R 326297 CDS YP_926670.1 119773930 4603045 977306..978382 1 NC_008700.1 KEGG: vfi:VFA0087 outer membrane protein RomA; outer membrane protein RomA 978382 4603045 Sama_0793 Shewanella amazonensis SB2B outer membrane protein RomA YP_926670.1 977306 D 326297 CDS YP_926671.1 119773931 4603046 978676..979479 1 NC_008700.1 KEGG: hypothetical protein; hypothetical protein 979479 4603046 Sama_0794 Shewanella amazonensis SB2B hypothetical protein YP_926671.1 978676 D 326297 CDS YP_926672.1 119773932 4603047 complement(979556..981064) 1 NC_008700.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 981064 4603047 Sama_0795 Shewanella amazonensis SB2B leucyl aminopeptidase YP_926672.1 979556 R 326297 CDS YP_926673.1 119773933 4603048 981287..982396 1 NC_008700.1 KEGG: son:SO1369 hypothetical protein; hypothetical protein 982396 4603048 Sama_0796 Shewanella amazonensis SB2B hypothetical protein YP_926673.1 981287 D 326297 CDS YP_926674.1 119773934 4603049 982393..983451 1 NC_008700.1 KEGG: son:SO1370 hypothetical protein; hypothetical protein 983451 4603049 Sama_0797 Shewanella amazonensis SB2B hypothetical protein YP_926674.1 982393 D 326297 CDS YP_926675.1 119773935 4603050 complement(983611..984123) 1 NC_008700.1 KEGG: sdn:Sden_0876 conserved hypothetical proteinF; hypothetical protein 984123 4603050 Sama_0798 Shewanella amazonensis SB2B hypothetical protein YP_926675.1 983611 R 326297 CDS YP_926676.1 119773936 4603051 complement(984127..984378) 1 NC_008700.1 KEGG: son:SO1372 hypothetical protein; hypothetical protein 984378 4603051 Sama_0799 Shewanella amazonensis SB2B hypothetical protein YP_926676.1 984127 R 326297 CDS YP_926677.1 119773937 4603052 complement(984400..984750) 1 NC_008700.1 KEGG: son:SO1373 hypothetical protein; hypothetical protein 984750 4603052 Sama_0800 Shewanella amazonensis SB2B hypothetical protein YP_926677.1 984400 R 326297 CDS YP_926678.1 119773938 4603053 complement(984758..985237) 1 NC_008700.1 KEGG: son:SO1374 acetyltransferase, GNAT family; acetyltransferase 985237 4603053 Sama_0801 Shewanella amazonensis SB2B acetyltransferase YP_926678.1 984758 R 326297 CDS YP_926679.1 119773939 4603054 complement(985300..986781) 1 NC_008700.1 KEGG: son:SO1375 carboxypeptidase; carboxypeptidase Taq 986781 4603054 Sama_0802 Shewanella amazonensis SB2B carboxypeptidase Taq YP_926679.1 985300 R 326297 CDS YP_926680.1 119773940 4603055 986935..987570 1 NC_008700.1 KEGG: son:SO1376 hypothetical protein; hypothetical protein 987570 4603055 Sama_0803 Shewanella amazonensis SB2B hypothetical protein YP_926680.1 986935 D 326297 CDS YP_926681.1 119773941 4603056 987597..989354 1 NC_008700.1 KEGG: son:SO1377 hypothetical protein; hypothetical protein 989354 4603056 Sama_0804 Shewanella amazonensis SB2B hypothetical protein YP_926681.1 987597 D 326297 CDS YP_926682.1 119773942 4603057 complement(989464..990213) 1 NC_008700.1 KEGG: sdn:Sden_0883 hypothetical protein; hypothetical protein 990213 4603057 Sama_0805 Shewanella amazonensis SB2B hypothetical protein YP_926682.1 989464 R 326297 CDS YP_926683.1 119773943 4603058 complement(990255..990905) 1 NC_008700.1 KEGG: son:SO1380 hypothetical protein; hypothetical protein 990905 4603058 Sama_0806 Shewanella amazonensis SB2B hypothetical protein YP_926683.1 990255 R 326297 CDS YP_926684.1 119773944 4603059 complement(990955..991638) 1 NC_008700.1 KEGG: sdn:Sden_0885 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen 991638 4603059 Sama_0807 Shewanella amazonensis SB2B alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_926684.1 990955 R 326297 CDS YP_926685.1 119773945 4603060 complement(991771..993069) 1 NC_008700.1 KEGG: sfr:Sfri_3068 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 993069 4603060 Sama_0808 Shewanella amazonensis SB2B DEAD/DEAH box helicase YP_926685.1 991771 R 326297 CDS YP_926686.1 119773946 4603061 993354..994589 1 NC_008700.1 KEGG: pha:PSHAa0134 hypothetical protein; putative diguanylate phosphodiesterase 994589 4603061 Sama_0809 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_926686.1 993354 D 326297 CDS YP_926687.1 119773947 4603062 994884..995837 1 NC_008700.1 KEGG: son:SO3386 hypothetical protein; hypothetical protein 995837 4603062 Sama_0810 Shewanella amazonensis SB2B hypothetical protein YP_926687.1 994884 D 326297 CDS YP_926688.1 119773948 4603063 995865..997292 1 NC_008700.1 KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 997292 4603063 Sama_0811 Shewanella amazonensis SB2B deoxyribodipyrimidine photo-lyase YP_926688.1 995865 D 326297 CDS YP_926689.1 119773949 4603064 997296..997799 1 NC_008700.1 KEGG: son:SO3383 transcriptional regulator-related protein; transcriptional regulator-like protein 997799 4603064 Sama_0812 Shewanella amazonensis SB2B transcriptional regulator-like protein YP_926689.1 997296 D 326297 CDS YP_926690.1 119773950 4603065 997799..998560 1 NC_008700.1 KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 998560 4603065 Sama_0813 Shewanella amazonensis SB2B short chain dehydrogenase/reductase family oxidoreductase YP_926690.1 997799 D 326297 CDS YP_926691.1 119773951 4603066 998630..999892 1 NC_008700.1 KEGG: son:SO3381 hypothetical protein; hypothetical protein 999892 4603066 Sama_0814 Shewanella amazonensis SB2B hypothetical protein YP_926691.1 998630 D 326297 CDS YP_926692.1 119773952 4603067 999889..1000683 1 NC_008700.1 KEGG: son:SO3380 hypothetical protein; hypothetical protein 1000683 4603067 Sama_0815 Shewanella amazonensis SB2B hypothetical protein YP_926692.1 999889 D 326297 CDS YP_926693.1 119773953 4603068 1000686..1001915 1 NC_008700.1 KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1001915 4603068 Sama_0816 Shewanella amazonensis SB2B cyclopropane-fatty-acyl-phospholipid synthase YP_926693.1 1000686 D 326297 CDS YP_926694.1 119773954 4603069 1001932..1002441 1 NC_008700.1 KEGG: son:SO3378 hypothetical protein; hypothetical protein 1002441 4603069 Sama_0817 Shewanella amazonensis SB2B hypothetical protein YP_926694.1 1001932 D 326297 CDS YP_926695.1 119773955 4603070 1002432..1002983 1 NC_008700.1 KEGG: son:SO3377 hypothetical protein; hypothetical protein 1002983 4603070 Sama_0818 Shewanella amazonensis SB2B hypothetical protein YP_926695.1 1002432 D 326297 CDS YP_926696.1 119773956 4603071 1002971..1003492 1 NC_008700.1 KEGG: son:SO3376 hypothetical protein; hypothetical protein 1003492 4603071 Sama_0819 Shewanella amazonensis SB2B hypothetical protein YP_926696.1 1002971 D 326297 CDS YP_926697.1 119773957 4603072 complement(1003582..1004358) 1 NC_008700.1 KEGG: sdn:Sden_0757 lipoprotein, putative; putative lipoprotein 1004358 4603072 Sama_0820 Shewanella amazonensis SB2B putative lipoprotein YP_926697.1 1003582 R 326297 CDS YP_926698.1 119773958 4603073 1004610..1004948 1 NC_008700.1 KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidyl-prolyl cis-trans isomerase FkbP 1004948 4603073 Sama_0821 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase FkbP YP_926698.1 1004610 D 326297 CDS YP_926699.1 119773959 4603074 1005145..1006518 1 NC_008700.1 KEGG: pae:PA4470 fumarate hydratase; fumarate hydratase 1006518 4603074 Sama_0822 Shewanella amazonensis SB2B fumarate hydratase YP_926699.1 1005145 D 326297 CDS YP_926700.1 119773960 4605933 complement(1006839..1008701) 1 NC_008700.1 KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 factor 1008701 4605933 Sama_0823 Shewanella amazonensis SB2B RNA polymerase sigma-70 factor YP_926700.1 1006839 R 326297 CDS YP_926701.1 119773961 4603076 complement(1008819..1010549) 1 NC_008700.1 KEGG: son:SO1286 DNA primase; DNA primase 1010549 4603076 Sama_0824 Shewanella amazonensis SB2B DNA primase YP_926701.1 1008819 R 326297 CDS YP_926702.1 119773962 4603077 complement(1010631..1011074) 1 NC_008700.1 KEGG: son:SO1287 hypothetical protein; hypothetical protein 1011074 4603077 Sama_0825 Shewanella amazonensis SB2B hypothetical protein YP_926702.1 1010631 R 326297 CDS YP_926703.1 119773963 4603078 complement(1011081..1011296) 1 NC_008700.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1011296 rpsU 4603078 rpsU Shewanella amazonensis SB2B 30S ribosomal protein S21 YP_926703.1 1011081 R 326297 CDS YP_926704.1 119773964 4603079 1011529..1012542 1 NC_008700.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1012542 4603079 Sama_0827 Shewanella amazonensis SB2B putative DNA-binding/iron metalloprotein/AP endonuclease YP_926704.1 1011529 D 326297 CDS YP_926705.1 119773965 4603080 complement(1012668..1013255) 1 NC_008700.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1013255 4603080 Sama_0828 Shewanella amazonensis SB2B putative glycerol-3-phosphate acyltransferase PlsY YP_926705.1 1012668 R 326297 CDS YP_926706.1 119773966 4603081 1013521..1013880 1 NC_008700.1 KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase 1013880 4603081 Sama_0829 Shewanella amazonensis SB2B dihydroneopterin aldolase YP_926706.1 1013521 D 326297 CDS YP_926707.1 119773967 4603082 1013883..1014386 1 NC_008700.1 KEGG: sdn:Sden_2827 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1014386 4603082 Sama_0830 Shewanella amazonensis SB2B 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_926707.1 1013883 D 326297 CDS YP_926708.1 119773968 4603083 1014399..1015199 1 NC_008700.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1015199 4603083 Sama_0831 Shewanella amazonensis SB2B undecaprenyl pyrophosphate phosphatase YP_926708.1 1014399 D 326297 CDS YP_926709.1 119773969 4603084 1015265..1016080 1 NC_008700.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A 1016080 4603084 Sama_0832 Shewanella amazonensis SB2B ribosomal RNA large subunit methyltransferase A YP_926709.1 1015265 D 326297 CDS YP_926710.1 119773970 4603085 complement(1016164..1016427) 1 NC_008700.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 1016427 4603085 Sama_0833 Shewanella amazonensis SB2B major outer membrane lipoprotein YP_926710.1 1016164 R 326297 CDS YP_926711.1 119773971 4603086 complement(1016610..1017893) 1 NC_008700.1 KEGG: sdn:Sden_2823 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 1017893 4603086 Sama_0834 Shewanella amazonensis SB2B polynucleotide adenylyltransferase YP_926711.1 1016610 R 326297 CDS YP_926712.1 119773972 4603087 1018134..1019975 1 NC_008700.1 KEGG: sdn:Sden_2822 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1019975 4603087 Sama_0835 Shewanella amazonensis SB2B peptidoglycan binding domain-containing protein YP_926712.1 1018134 D 326297 CDS YP_926713.1 119773973 4603088 1019975..1021087 1 NC_008700.1 KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B 1021087 4603088 Sama_0836 Shewanella amazonensis SB2B general secretion pathway protein B YP_926713.1 1019975 D 326297 CDS YP_926714.1 119773974 4603089 complement(1021168..1022415) 1 NC_008700.1 KEGG: sdn:Sden_2820 citrate transporter; citrate transporter 1022415 4603089 Sama_0837 Shewanella amazonensis SB2B citrate transporter YP_926714.1 1021168 R 326297 CDS YP_926715.1 119773975 4603090 1022935..1023120 1 NC_008700.1 hypothetical protein 1023120 4603090 Sama_0838 Shewanella amazonensis SB2B hypothetical protein YP_926715.1 1022935 D 326297 CDS YP_926716.1 119773976 4603091 complement(1023262..1024545) 1 NC_008700.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1024545 4603091 Sama_0839 Shewanella amazonensis SB2B glutamate-1-semialdehyde aminotransferase YP_926716.1 1023262 R 326297 CDS YP_926717.1 119773977 4603092 complement(1024575..1025594) 1 NC_008700.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 1025594 4603092 Sama_0840 Shewanella amazonensis SB2B aspartate carbamoyltransferase YP_926717.1 1024575 R 326297 CDS YP_926718.1 119773978 4603093 complement(1025735..1027450) 1 NC_008700.1 KEGG: son:SO1302 chloride channel; chloride channel 1027450 4603093 Sama_0841 Shewanella amazonensis SB2B chloride channel YP_926718.1 1025735 R 326297 CDS YP_926719.1 119773979 4603094 1027560..1028363 1 NC_008700.1 KEGG: shm:Shewmr7_2972 hypothetical protein; hypothetical protein 1028363 4603094 Sama_0842 Shewanella amazonensis SB2B hypothetical protein YP_926719.1 1027560 D 326297 CDS YP_926720.1 119773980 4603095 1028356..1028706 1 NC_008700.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1028706 4603095 Sama_0843 Shewanella amazonensis SB2B iron-sulfur cluster insertion protein ErpA YP_926720.1 1028356 D 326297 CDS YP_926721.1 119773981 4603096 complement(1028794..1029216) 1 NC_008700.1 KEGG: son:SO1305 hypothetical protein; hypothetical protein 1029216 4603096 Sama_0844 Shewanella amazonensis SB2B hypothetical protein YP_926721.1 1028794 R 326297 CDS YP_926722.1 119773982 4603097 complement(1029230..1029682) 1 NC_008700.1 KEGG: sdn:Sden_2813 hypothetical protein; hypothetical protein 1029682 4603097 Sama_0845 Shewanella amazonensis SB2B hypothetical protein YP_926722.1 1029230 R 326297 CDS YP_926723.1 119773983 4603098 complement(1029743..1032268) 1 NC_008700.1 KEGG: son:SO1310 hypothetical protein; hypothetical protein 1032268 4603098 Sama_0846 Shewanella amazonensis SB2B hypothetical protein YP_926723.1 1029743 R 326297 CDS YP_926724.1 119773984 4603099 1032488..1034590 1 NC_008700.1 KEGG: son:SO1312 TolB domain protein; periplasmic component of the Tol biopolymer transport system-like protein 1034590 4603099 Sama_0847 Shewanella amazonensis SB2B periplasmic component of the Tol biopolymer transport system-like protein YP_926724.1 1032488 D 326297 CDS YP_926725.1 119773985 4603100 complement(1034646..1035755) 1 NC_008700.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1035755 anmK 4603100 anmK Shewanella amazonensis SB2B anhydro-N-acetylmuramic acid kinase YP_926725.1 1034646 R 326297 CDS YP_926726.1 119773986 4603101 complement(1035752..1037140) 1 NC_008700.1 KEGG: son:SO1314 peptidase, M23/M37 family; M24/M37 family peptidase 1037140 4603101 Sama_0849 Shewanella amazonensis SB2B M24/M37 family peptidase YP_926726.1 1035752 R 326297 CDS YP_926727.1 119773987 4603102 1037269..1038468 1 NC_008700.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1038468 4603102 Sama_0850 Shewanella amazonensis SB2B tyrosyl-tRNA synthetase YP_926727.1 1037269 D 326297 CDS YP_926728.1 119773988 4603103 complement(1038566..1039039) 1 NC_008700.1 KEGG: son:SO1318 hypothetical protein; hypothetical protein 1039039 4603103 Sama_0851 Shewanella amazonensis SB2B hypothetical protein YP_926728.1 1038566 R 326297 CDS YP_926729.1 119773989 4603104 complement(1039043..1039666) 1 NC_008700.1 KEGG: son:SO1319 hypothetical protein; hypothetical protein 1039666 4603104 Sama_0852 Shewanella amazonensis SB2B hypothetical protein YP_926729.1 1039043 R 326297 CDS YP_926730.1 119773990 4603105 complement(1039663..1040052) 1 NC_008700.1 KEGG: son:SO1320 hypothetical protein; hypothetical protein 1040052 4603105 Sama_0853 Shewanella amazonensis SB2B hypothetical protein YP_926730.1 1039663 R 326297 CDS YP_926731.1 119773991 4603106 complement(1040123..1041112) 1 NC_008700.1 KEGG: son:SO1321 CobD-related protein; CobD-like protein 1041112 4603106 Sama_0854 Shewanella amazonensis SB2B CobD-like protein YP_926731.1 1040123 R 326297 CDS YP_926732.1 119773992 4603107 complement(1041113..1041868) 1 NC_008700.1 KEGG: sdn:Sden_2801 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase 1041868 4603107 Sama_0855 Shewanella amazonensis SB2B adenosylhomocysteine nucleosidase YP_926732.1 1041113 R 326297 CDS YP_926733.1 119773993 4603108 complement(1041950..1043368) 1 NC_008700.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1043368 gltD 4603108 gltD Shewanella amazonensis SB2B glutamate synthase subunit beta YP_926733.1 1041950 R 326297 CDS YP_926734.1 119773994 4603109 complement(1043376..1047827) 1 NC_008700.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 1047827 gltB 4603109 gltB Shewanella amazonensis SB2B glutamate synthase subunit alpha YP_926734.1 1043376 R 326297 CDS YP_926735.1 119773995 4603110 1048333..1049286 1 NC_008700.1 KEGG: son:SO1326 hypothetical protein; hypothetical protein 1049286 4603110 Sama_0858 Shewanella amazonensis SB2B hypothetical protein YP_926735.1 1048333 D 326297 CDS YP_926736.1 119773996 4603111 1049465..1049830 1 NC_008700.1 KEGG: sdn:Sden_2789 Hpt; hypothetical protein 1049830 4603111 Sama_0859 Shewanella amazonensis SB2B hypothetical protein YP_926736.1 1049465 D 326297 CDS YP_926737.1 119773997 4603112 1050167..1051138 1 NC_008700.1 KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator 1051138 4603112 Sama_0860 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926737.1 1050167 D 326297 CDS YP_926738.1 119773998 4603113 complement(1051168..1052244) 1 NC_008700.1 KEGG: son:SO1329 adenylate cyclase-related protein; adenylate cyclase-like protein 1052244 4603113 Sama_0861 Shewanella amazonensis SB2B adenylate cyclase-like protein YP_926738.1 1051168 R 326297 CDS YP_926739.1 119773999 4603114 complement(1052366..1053040) 1 NC_008700.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1053040 4603114 Sama_0862 Shewanella amazonensis SB2B DNA mismatch repair protein YP_926739.1 1052366 R 326297 CDS YP_926740.1 119774000 4603115 1053718..1054254 1 NC_008700.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1054254 4603115 Sama_0863 Shewanella amazonensis SB2B dinucleoside polyphosphate hydrolase YP_926740.1 1053718 D 326297 CDS YP_926741.1 119774001 4603116 1054294..1056528 1 NC_008700.1 KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1056528 4603116 Sama_0864 Shewanella amazonensis SB2B phosphoenolpyruvate-protein phosphotransferase PtsP YP_926741.1 1054294 D 326297 CDS YP_926742.1 119774002 4603117 1056627..1057394 1 NC_008700.1 KEGG: son:SO1333 hypothetical protein; hypothetical protein 1057394 4603117 Sama_0865 Shewanella amazonensis SB2B hypothetical protein YP_926742.1 1056627 D 326297 CDS YP_926743.1 119774003 4603118 1057435..1058241 1 NC_008700.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1058241 4603118 Sama_0866 Shewanella amazonensis SB2B prolipoprotein diacylglyceryl transferase YP_926743.1 1057435 D 326297 CDS YP_926744.1 119774004 4603119 1058241..1059035 1 NC_008700.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1059035 thyA 4603119 thyA Shewanella amazonensis SB2B thymidylate synthase YP_926744.1 1058241 D 326297 CDS YP_926745.1 119774005 4603120 1059157..1060332 1 NC_008700.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1060332 nhaA 4603120 nhaA Shewanella amazonensis SB2B pH-dependent sodium/proton antiporter YP_926745.1 1059157 D 326297 CDS YP_926746.1 119774006 4603121 1060329..1060712 1 NC_008700.1 KEGG: son:SO1337 hypothetical protein; hypothetical protein 1060712 4603121 Sama_0869 Shewanella amazonensis SB2B hypothetical protein YP_926746.1 1060329 D 326297 CDS YP_926747.1 119774007 4603122 1060712..1061620 1 NC_008700.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1061620 nhaR 4603122 nhaR Shewanella amazonensis SB2B transcriptional activator NhaR YP_926747.1 1060712 D 326297 CDS YP_926748.1 119774008 4603123 1061729..1061968 1 NC_008700.1 KEGG: son:SO1339 hypothetical protein; hypothetical protein 1061968 4603123 Sama_0871 Shewanella amazonensis SB2B hypothetical protein YP_926748.1 1061729 D 326297 CDS YP_926749.1 119774009 4603124 1061949..1062374 1 NC_008700.1 KEGG: son:SO1340 hypothetical protein; hypothetical protein 1062374 4603124 Sama_0872 Shewanella amazonensis SB2B hypothetical protein YP_926749.1 1061949 D 326297 CDS YP_926750.1 119774010 4603125 complement(1062349..1063956) 1 NC_008700.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1063956 4603125 Sama_0873 Shewanella amazonensis SB2B L-aspartate oxidase YP_926750.1 1062349 R 326297 CDS YP_926751.1 119774011 4603126 1064144..1064722 1 NC_008700.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1064722 4603126 Sama_0874 Shewanella amazonensis SB2B RNA polymerase sigma factor RpoE YP_926751.1 1064144 D 326297 CDS YP_926752.1 119774012 4603127 1064777..1065373 1 NC_008700.1 KEGG: son:SO1343 sigma-E factor negative regulatory protein; sigma-E factor negative regulatory protein 1065373 4603127 Sama_0875 Shewanella amazonensis SB2B sigma-E factor negative regulatory protein YP_926752.1 1064777 D 326297 CDS YP_926753.1 119774013 4603128 1065384..1066322 1 NC_008700.1 KEGG: son:SO1344 sigma-E factor regulatory protein RseB; putative sigma E regulatory protein, MucB/RseB 1066322 4603128 Sama_0876 Shewanella amazonensis SB2B putative sigma E regulatory protein, MucB/RseB YP_926753.1 1065384 D 326297 CDS YP_926754.1 119774014 4603129 1066319..1066798 1 NC_008700.1 KEGG: son:SO1345 sigma-E factor regulatory protein RseC; sigma-E factor regulatory protein RseC 1066798 4603129 Sama_0877 Shewanella amazonensis SB2B sigma-E factor regulatory protein RseC YP_926754.1 1066319 D 326297 CDS YP_926755.1 119774015 4603130 1066895..1068685 1 NC_008700.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1068685 4603130 Sama_0878 Shewanella amazonensis SB2B GTP-binding protein LepA YP_926755.1 1066895 D 326297 CDS YP_926756.1 119774016 4603131 1068870..1069787 1 NC_008700.1 KEGG: son:SO1347 signal peptidase I; Signal peptidase I 1069787 4603131 Sama_0879 Shewanella amazonensis SB2B Signal peptidase I YP_926756.1 1068870 D 326297 CDS YP_926757.1 119774017 4603132 1069793..1070473 1 NC_008700.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1070473 rnc 4603132 rnc Shewanella amazonensis SB2B ribonuclease III YP_926757.1 1069793 D 326297 CDS YP_926758.1 119774018 4603133 1070470..1071468 1 NC_008700.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1071468 era 4603133 era Shewanella amazonensis SB2B GTP-binding protein Era YP_926758.1 1070470 D 326297 CDS YP_926759.1 119774019 4603134 1071482..1072156 1 NC_008700.1 KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 1072156 4603134 Sama_0882 Shewanella amazonensis SB2B DNA repair protein RecO YP_926759.1 1071482 D 326297 CDS YP_926760.1 119774020 4603135 1072270..1073007 1 NC_008700.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1073007 4603135 Sama_0883 Shewanella amazonensis SB2B pyridoxine 5'-phosphate synthase YP_926760.1 1072270 D 326297 CDS YP_926761.1 119774021 4603136 1073007..1073384 1 NC_008700.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1073384 acpS 4603136 acpS Shewanella amazonensis SB2B 4'-phosphopantetheinyl transferase YP_926761.1 1073007 D 326297 CDS YP_926762.1 119774022 4603137 1073550..1074077 1 NC_008700.1 KEGG: sdn:Sden_2761 protein of unknown function DUF962; hypothetical protein 1074077 4603137 Sama_0885 Shewanella amazonensis SB2B hypothetical protein YP_926762.1 1073550 D 326297 CDS YP_926763.1 119774023 4603138 complement(1074108..1075397) 1 NC_008700.1 KEGG: sdn:Sden_2757 protein of unknown function DUF21; hypothetical protein 1075397 4603138 Sama_0886 Shewanella amazonensis SB2B hypothetical protein YP_926763.1 1074108 R 326297 CDS YP_926764.1 119774024 4603139 complement(1075492..1076280) 1 NC_008700.1 KEGG: son:SO1355 hypothetical protein; hypothetical protein 1076280 4603139 Sama_0887 Shewanella amazonensis SB2B hypothetical protein YP_926764.1 1075492 R 326297 CDS YP_926765.1 119774025 4603140 1076533..1077906 1 NC_008700.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1077906 4603140 Sama_0888 Shewanella amazonensis SB2B signal recognition particle protein YP_926765.1 1076533 D 326297 CDS YP_926766.1 119774026 4603141 1078064..1078315 1 NC_008700.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1078315 rpsP 4603141 rpsP Shewanella amazonensis SB2B 30S ribosomal protein S16 YP_926766.1 1078064 D 326297 CDS YP_926767.1 119774027 4603142 1078336..1078866 1 NC_008700.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1078866 rimM 4603142 rimM Shewanella amazonensis SB2B 16S rRNA-processing protein RimM YP_926767.1 1078336 D 326297 CDS YP_926768.1 119774028 4603143 1078882..1079634 1 NC_008700.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1079634 trmD 4603143 trmD Shewanella amazonensis SB2B tRNA (guanine-N(1)-)-methyltransferase YP_926768.1 1078882 D 326297 CDS YP_926769.1 119774029 4603144 1079662..1080015 1 NC_008700.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1080015 rplS 4603144 rplS Shewanella amazonensis SB2B 50S ribosomal protein L19 YP_926769.1 1079662 D 326297 CDS YP_926770.1 119774030 4603145 1080314..1081405 1 NC_008700.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1081405 4603145 Sama_0893 Shewanella amazonensis SB2B phospho-2-dehydro-3-deoxyheptonate aldolase YP_926770.1 1080314 D 326297 CDS YP_926771.1 119774031 4603146 1081419..1082558 1 NC_008700.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1082558 tyrA 4603146 tyrA Shewanella amazonensis SB2B bifunctional chorismate mutase/prephenate dehydrogenase YP_926771.1 1081419 D 326297 CDS YP_926772.1 119774032 4603147 1082738..1084402 1 NC_008700.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1084402 4603147 Sama_0895 Shewanella amazonensis SB2B hydroxylamine reductase YP_926772.1 1082738 D 326297 CDS YP_926773.1 119774033 4603148 1084460..1085530 1 NC_008700.1 KEGG: son:SO1364 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1085530 4603148 Sama_0896 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_926773.1 1084460 D 326297 CDS YP_926774.1 119774034 4603149 1085678..1086052 1 NC_008700.1 KEGG: sdn:Sden_2748 hypothetical protein; hypothetical protein 1086052 4603149 Sama_0897 Shewanella amazonensis SB2B hypothetical protein YP_926774.1 1085678 D 326297 CDS YP_926775.1 119774035 4603150 complement(1086123..1088102) 1 NC_008700.1 KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase; prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase 1088102 4603150 Sama_0898 Shewanella amazonensis SB2B prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase YP_926775.1 1086123 R 326297 CDS YP_926776.1 119774036 4603151 complement(1088371..1088727) 1 NC_008700.1 KEGG: son:SO3422 ribosomal subunit interface protein; ribosomal subunit interface protein 1088727 4603151 Sama_0899 Shewanella amazonensis SB2B ribosomal subunit interface protein YP_926776.1 1088371 R 326297 CDS YP_926777.1 119774037 4603152 1089018..1089686 1 NC_008700.1 KEGG: son:SO3421 b-type cytochrome, putative; b-type cytochrome 1089686 4603152 Sama_0900 Shewanella amazonensis SB2B b-type cytochrome YP_926777.1 1089018 D 326297 CDS YP_926778.1 119774038 4603153 complement(1089750..1090193) 1 NC_008700.1 KEGG: sdn:Sden_2744 cytochrome c, class II; cytochrome c, class II 1090193 4603153 Sama_0901 Shewanella amazonensis SB2B cytochrome c, class II YP_926778.1 1089750 R 326297 CDS YP_926779.1 119774039 4603154 1090379..1090675 1 NC_008700.1 KEGG: sdn:Sden_2743 Trp repressor; putative Trp operon repressor 1090675 4603154 Sama_0902 Shewanella amazonensis SB2B putative Trp operon repressor YP_926779.1 1090379 D 326297 CDS YP_926780.1 119774040 4603155 complement(1090676..1091053) 1 NC_008700.1 KEGG: sdn:Sden_2742 hypothetical protein; hypothetical protein 1091053 4603155 Sama_0903 Shewanella amazonensis SB2B hypothetical protein YP_926780.1 1090676 R 326297 CDS YP_926781.1 119774041 4603156 complement(1091171..1091782) 1 NC_008700.1 KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidyl-prolyl cis-trans isomerase SlyD 1091782 4603156 Sama_0904 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase SlyD YP_926781.1 1091171 R 326297 CDS YP_926782.1 119774042 4603157 1092368..1094833 1 NC_008700.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1094833 thrA 4603157 thrA Shewanella amazonensis SB2B bifunctional aspartokinase I/homoserine dehydrogenase I YP_926782.1 1092368 D 326297 CDS YP_926783.1 119774043 4603158 1094830..1095774 1 NC_008700.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1095774 4603158 Sama_0906 Shewanella amazonensis SB2B homoserine kinase YP_926783.1 1094830 D 326297 CDS YP_926784.1 119774044 4603159 1095784..1097070 1 NC_008700.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1097070 4603159 Sama_0907 Shewanella amazonensis SB2B threonine synthase YP_926784.1 1095784 D 326297 CDS YP_926785.1 119774045 4603160 1097208..1099250 1 NC_008700.1 KEGG: mag:amb3313 signal transduction histidine kinase; signal transduction histidine kinase-like protein 1099250 4603160 Sama_0908 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926785.1 1097208 D 326297 CDS YP_926786.1 119774046 4603161 1099255..1100349 1 NC_008700.1 KEGG: dar:Daro_3172 response regulator receiver; response regulator receiver protein 1100349 4603161 Sama_0909 Shewanella amazonensis SB2B response regulator receiver protein YP_926786.1 1099255 D 326297 CDS YP_926787.1 119774047 4603162 1100464..1101003 1 NC_008700.1 KEGG: son:SO3549 hypothetical protein; hypothetical protein 1101003 4603162 Sama_0910 Shewanella amazonensis SB2B hypothetical protein YP_926787.1 1100464 D 326297 CDS YP_926788.1 119774048 4603163 complement(1101061..1101246) 1 NC_008700.1 KEGG: son:SO3548 hypothetical protein; hypothetical protein 1101246 4603163 Sama_0911 Shewanella amazonensis SB2B hypothetical protein YP_926788.1 1101061 R 326297 CDS YP_926789.1 119774049 4603164 complement(1101444..1103081) 1 NC_008700.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1103081 pgi 4603164 pgi Shewanella amazonensis SB2B glucose-6-phosphate isomerase YP_926789.1 1101444 R 326297 CDS YP_926790.1 119774050 4603165 complement(1103101..1104054) 1 NC_008700.1 KEGG: son:SO3546 transaldolase; transaldolase B 1104054 4603165 Sama_0913 Shewanella amazonensis SB2B transaldolase B YP_926790.1 1103101 R 326297 CDS YP_926791.1 119774051 4603166 complement(1104264..1105370) 1 NC_008700.1 KEGG: sdn:Sden_2732 OmpA/MotB; OmpA/MotB protein 1105370 4603166 Sama_0914 Shewanella amazonensis SB2B OmpA/MotB protein YP_926791.1 1104264 R 326297 CDS YP_926792.1 119774052 4603167 complement(1105589..1107955) 1 NC_008700.1 KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 1107955 4603167 Sama_0915 Shewanella amazonensis SB2B putative phosphoketolase YP_926792.1 1105589 R 326297 CDS YP_926793.1 119774053 4603168 1108397..1109839 1 NC_008700.1 KEGG: son:SO3541 sodium:alanine symporter family protein; sodium:alanine symporter family protein 1109839 4603168 Sama_0916 Shewanella amazonensis SB2B sodium:alanine symporter family protein YP_926793.1 1108397 D 326297 CDS YP_926794.1 119774054 4603169 1109937..1110710 1 NC_008700.1 KEGG: vch:VC2355 hypothetical protein; hypothetical protein 1110710 4603169 Sama_0917 Shewanella amazonensis SB2B hypothetical protein YP_926794.1 1109937 D 326297 CDS YP_926795.1 119774055 4603170 1110876..1111322 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1111322 4603170 Sama_0918 Shewanella amazonensis SB2B IS1004 transposase YP_926795.1 1110876 D 326297 CDS YP_926796.1 119774056 4603171 complement(1111402..1112805) 1 NC_008700.1 KEGG: sdn:Sden_2728 peptidase M28; peptidase M28 1112805 4603171 Sama_0919 Shewanella amazonensis SB2B peptidase M28 YP_926796.1 1111402 R 326297 CDS YP_926797.1 119774057 4603172 1112941..1113237 1 NC_008700.1 KEGG: son:SO3538 transcriptional regulator HlyU; transcriptional regulator HlyU 1113237 4603172 Sama_0920 Shewanella amazonensis SB2B transcriptional regulator HlyU YP_926797.1 1112941 D 326297 CDS YP_926798.1 119774058 4603173 complement(1113292..1113558) 1 NC_008700.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1113558 rpsT 4603173 rpsT Shewanella amazonensis SB2B 30S ribosomal protein S20 YP_926798.1 1113292 R 326297 CDS YP_926799.1 119774059 4603174 1113812..1115377 1 NC_008700.1 KEGG: sdn:Sden_2725 integral membrane protein MviN; integral membrane protein MviN 1115377 4603174 Sama_0922 Shewanella amazonensis SB2B integral membrane protein MviN YP_926799.1 1113812 D 326297 CDS YP_926800.1 119774060 4603175 1115436..1116371 1 NC_008700.1 KEGG: son:SO3533 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1116371 4603175 Sama_0923 Shewanella amazonensis SB2B riboflavin biosynthesis protein RibF YP_926800.1 1115436 D 326297 CDS YP_926801.1 119774061 4603176 1116414..1119236 1 NC_008700.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1119236 ileS 4603176 ileS Shewanella amazonensis SB2B isoleucyl-tRNA synthetase YP_926801.1 1116414 D 326297 CDS YP_926802.1 119774062 4603177 1119245..1119751 1 NC_008700.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1119751 lspA 4603177 lspA Shewanella amazonensis SB2B lipoprotein signal peptidase YP_926802.1 1119245 D 326297 CDS YP_926803.1 119774063 4603178 1119755..1120174 1 NC_008700.1 KEGG: sdn:Sden_2721 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1120174 4603178 Sama_0926 Shewanella amazonensis SB2B peptidylprolyl isomerase, FKBP-type YP_926803.1 1119755 D 326297 CDS YP_926804.1 119774064 4603179 1120174..1121115 1 NC_008700.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1121115 ispH 4603179 ispH Shewanella amazonensis SB2B 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_926804.1 1120174 D 326297 CDS YP_926805.1 119774065 4603180 1121344..1121862 1 NC_008700.1 KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus assembly protein PilV 1121862 4603180 Sama_0928 Shewanella amazonensis SB2B type IV pilus assembly protein PilV YP_926805.1 1121344 D 326297 CDS YP_926806.1 119774066 4603181 1121868..1122842 1 NC_008700.1 KEGG: son:SO3527 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 1122842 4603181 Sama_0929 Shewanella amazonensis SB2B type IV pilus assembly protein PilW YP_926806.1 1121868 D 326297 CDS YP_926807.1 119774067 4603182 1122855..1123325 1 NC_008700.1 KEGG: shm:Shewmr7_3033 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1123325 4603182 Sama_0930 Shewanella amazonensis SB2B type IV pilus assembly protein PilX YP_926807.1 1122855 D 326297 CDS YP_926808.1 119774068 4603183 1123322..1126927 1 NC_008700.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1126927 4603183 Sama_0931 Shewanella amazonensis SB2B type IV pilin biogenesis protein YP_926808.1 1123322 D 326297 CDS YP_926809.1 119774069 4603184 1126945..1127343 1 NC_008700.1 KEGG: son:SO3524 type IV pilus biogenesis protein PilE; type IV pilus biogenesis protein PilE 1127343 4603184 Sama_0932 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilE YP_926809.1 1126945 D 326297 CDS YP_926810.1 119774070 4603185 complement(1127703..1128194) 1 NC_008700.1 KEGG: she:Shewmr4_2947 methylation site containing protein; methylation site containing protein 1128194 4603185 Sama_0933 Shewanella amazonensis SB2B methylation site containing protein YP_926810.1 1127703 R 326297 CDS YP_926811.1 119774071 4603186 complement(1128312..1128824) 1 NC_008700.1 KEGG: son:SO3520 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein 1128824 4603186 Sama_0934 Shewanella amazonensis SB2B type IV pilus biogenesis protein YP_926811.1 1128312 R 326297 CDS YP_926812.1 119774072 4603187 1129044..1129382 1 NC_008700.1 KEGG: sdn:Sden_2711 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1129382 4603187 Sama_0935 Shewanella amazonensis SB2B nitrogen regulatory protein P-II YP_926812.1 1129044 D 326297 CDS YP_926813.1 119774073 4603188 1129602..1130891 1 NC_008700.1 KEGG: son:SO3517 NADH dehydrogenase; NADH dehydrogenase 1130891 4603188 Sama_0936 Shewanella amazonensis SB2B NADH dehydrogenase YP_926813.1 1129602 D 326297 CDS YP_926814.1 119774074 4603189 complement(1130902..1131915) 1 NC_008700.1 KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcriptional regulator 1131915 4603189 Sama_0937 Shewanella amazonensis SB2B LacI family transcriptional regulator YP_926814.1 1130902 R 326297 CDS YP_926815.1 119774075 4603190 1132332..1134977 1 NC_008700.1 KEGG: sdn:Sden_2708 TonB-dependent receptor; TonB-dependent receptor 1134977 4603190 Sama_0938 Shewanella amazonensis SB2B TonB-dependent receptor YP_926815.1 1132332 D 326297 CDS YP_926816.1 119774076 4603191 1135041..1136564 1 NC_008700.1 KEGG: sdn:Sden_2707 tryptophan halogenase; tryptophan halogenase 1136564 4603191 Sama_0939 Shewanella amazonensis SB2B tryptophan halogenase YP_926816.1 1135041 D 326297 CDS YP_926817.1 119774077 4603192 complement(1136632..1137324) 1 NC_008700.1 KEGG: son:SO3512 hypothetical protein; hypothetical protein 1137324 4603192 Sama_0940 Shewanella amazonensis SB2B hypothetical protein YP_926817.1 1136632 R 326297 CDS YP_926818.1 119774078 4603193 1138366..1139229 1 NC_008700.1 KEGG: sde:Sde_2658 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 1139229 4603193 Sama_0941 Shewanella amazonensis SB2B type IV pilus assembly protein PilM YP_926818.1 1138366 D 326297 CDS YP_926819.1 119774079 4603194 1139226..1140713 1 NC_008700.1 KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 1140713 4603194 Sama_0942 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926819.1 1139226 D 326297 CDS YP_926820.1 119774080 4603195 1140745..1143399 1 NC_008700.1 KEGG: son:SO3509 beta-hexosaminidase b precursor; beta-N-acetylhexosaminidase 1143399 4603195 Sama_0943 Shewanella amazonensis SB2B beta-N-acetylhexosaminidase YP_926820.1 1140745 D 326297 CDS YP_926821.1 119774081 4603196 1143619..1144524 1 NC_008700.1 KEGG: son:SO3507 hypothetical protein; hypothetical protein 1144524 4603196 Sama_0944 Shewanella amazonensis SB2B hypothetical protein YP_926821.1 1143619 D 326297 CDS YP_926822.1 119774082 4603197 1144569..1145567 1 NC_008700.1 KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine--fructose-6-phosphate transaminase (isomerizing) 1145567 4603197 Sama_0945 Shewanella amazonensis SB2B glutamine--fructose-6-phosphate transaminase (isomerizing) YP_926822.1 1144569 D 326297 CDS YP_926823.1 119774083 4603198 1145587..1146720 1 NC_008700.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1146720 4603198 Sama_0946 Shewanella amazonensis SB2B N-acetylglucosamine-6-phosphate deacetylase YP_926823.1 1145587 D 326297 CDS YP_926824.1 119774084 4603199 1146829..1147965 1 NC_008700.1 KEGG: son:SO3504 hypothetical protein; hypothetical protein 1147965 4603199 Sama_0947 Shewanella amazonensis SB2B hypothetical protein YP_926824.1 1146829 D 326297 CDS YP_926825.1 119774085 4603200 1148200..1149525 1 NC_008700.1 KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1149525 4603200 Sama_0948 Shewanella amazonensis SB2B multiple antibiotic resistance (MarC)-like protein YP_926825.1 1148200 D 326297 CDS YP_926826.1 119774086 4605935 1150227..1150772 1 NC_008700.1 KEGG: csa:Csal_1313 cytochrome b561; cytochrome b561 1150772 4605935 Sama_0949 Shewanella amazonensis SB2B cytochrome b561 YP_926826.1 1150227 D 326297 CDS YP_926827.1 119774087 4603202 1150775..1151347 1 NC_008700.1 KEGG: son:SO3370 hypothetical protein; hypothetical protein 1151347 4603202 Sama_0950 Shewanella amazonensis SB2B hypothetical protein YP_926827.1 1150775 D 326297 CDS YP_926828.1 119774088 4603203 1151517..1151993 1 NC_008700.1 KEGG: son:SO1191 transcription elongation factor GreA; GreA/GreB family elongation factor 1151993 4603203 Sama_0951 Shewanella amazonensis SB2B GreA/GreB family elongation factor YP_926828.1 1151517 D 326297 CDS YP_926829.1 119774089 4603204 complement(1152075..1152374) 1 NC_008700.1 KEGG: son:SO1195 putative RNA-binding protein containing KH domain; RNA-binding protein 1152374 4603204 Sama_0952 Shewanella amazonensis SB2B RNA-binding protein YP_926829.1 1152075 R 326297 CDS YP_926830.1 119774090 4603205 1152464..1153093 1 NC_008700.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1153093 rrmJ 4603205 rrmJ Shewanella amazonensis SB2B 23S rRNA methyltransferase J YP_926830.1 1152464 D 326297 CDS YP_926831.1 119774091 4603206 1153139..1155091 1 NC_008700.1 KEGG: son:SO1197 cell division protein FtsH; vesicle-fusing ATPase 1155091 4603206 Sama_0954 Shewanella amazonensis SB2B vesicle-fusing ATPase YP_926831.1 1153139 D 326297 CDS YP_926832.1 119774092 4603207 1155159..1155998 1 NC_008700.1 KEGG: son:SO1198 dihydropteroate synthase; dihydropteroate synthase 1155998 4603207 Sama_0955 Shewanella amazonensis SB2B dihydropteroate synthase YP_926832.1 1155159 D 326297 CDS YP_926833.1 119774093 4603208 1156061..1157398 1 NC_008700.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1157398 glmM 4603208 glmM Shewanella amazonensis SB2B phosphoglucosamine mutase YP_926833.1 1156061 D 326297 CDS YP_926834.1 119774094 4603209 1157568..1158350 1 NC_008700.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1158350 4603209 Sama_0957 Shewanella amazonensis SB2B triosephosphate isomerase YP_926834.1 1157568 D 326297 CDS YP_926835.1 119774095 4603210 1158352..1158678 1 NC_008700.1 KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1158678 secG 4603210 secG Shewanella amazonensis SB2B preprotein translocase subunit SecG YP_926835.1 1158352 D 326297 CDS YP_926836.1 119774096 4605937 1159104..1159559 1 NC_008700.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1159559 4605937 Sama_0959 Shewanella amazonensis SB2B hypothetical protein YP_926836.1 1159104 D 326297 CDS YP_926837.1 119774097 4603212 1159587..1161086 1 NC_008700.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1161086 nusA 4603212 nusA Shewanella amazonensis SB2B transcription elongation factor NusA YP_926837.1 1159587 D 326297 CDS YP_926838.1 119774098 4603213 1161111..1163759 1 NC_008700.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1163759 infB 4603213 infB Shewanella amazonensis SB2B translation initiation factor IF-2 YP_926838.1 1161111 D 326297 CDS YP_926839.1 119774099 4603214 1163813..1164226 1 NC_008700.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1164226 rbfA 4603214 rbfA Shewanella amazonensis SB2B ribosome-binding factor A YP_926839.1 1163813 D 326297 CDS YP_926840.1 119774100 4603215 1164226..1165173 1 NC_008700.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1165173 truB 4603215 truB Shewanella amazonensis SB2B tRNA pseudouridine synthase B YP_926840.1 1164226 D 326297 CDS YP_926841.1 119774101 4605938 1165272..1165541 1 NC_008700.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1165541 rpsO 4605938 rpsO Shewanella amazonensis SB2B 30S ribosomal protein S15 YP_926841.1 1165272 D 326297 CDS YP_926842.1 119774102 4603217 complement(1165609..1167651) 1 NC_008700.1 KEGG: son:SO1208 GGDEF domain protein protein; diguanylate cyclase 1167651 4603217 Sama_0965 Shewanella amazonensis SB2B diguanylate cyclase YP_926842.1 1165609 R 326297 CDS YP_926843.1 119774103 4603218 1167839..1169938 1 NC_008700.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase/polyadenylase 1169938 4603218 Sama_0966 Shewanella amazonensis SB2B polynucleotide phosphorylase/polyadenylase YP_926843.1 1167839 D 326297 CDS YP_926844.1 119774104 4603219 1170119..1171024 1 NC_008700.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1171024 4603219 Sama_0967 Shewanella amazonensis SB2B lipoprotein NlpI YP_926844.1 1170119 D 326297 CDS YP_926845.1 119774105 4603220 1171131..1172717 1 NC_008700.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1172717 prfC 4603220 prfC Shewanella amazonensis SB2B peptide chain release factor 3 YP_926845.1 1171131 D 326297 CDS YP_926846.1 119774106 4603221 1172778..1173008 1 NC_008700.1 hypothetical protein 1173008 4603221 Sama_0969 Shewanella amazonensis SB2B hypothetical protein YP_926846.1 1172778 D 326297 CDS YP_926847.1 119774107 4603222 1173084..1173866 1 NC_008700.1 KEGG: sdn:Sden_1022 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 1173866 4603222 Sama_0970 Shewanella amazonensis SB2B TatD-related deoxyribonuclease YP_926847.1 1173084 D 326297 CDS YP_926848.1 119774108 4603223 1174043..1175302 1 NC_008700.1 KEGG: sdn:Sden_1023 nucleoside transporter; nucleoside transporter 1175302 4603223 Sama_0971 Shewanella amazonensis SB2B nucleoside transporter YP_926848.1 1174043 D 326297 CDS YP_926849.1 119774109 4603224 1175591..1176400 1 NC_008700.1 KEGG: vfi:VF0719 putative sugar hydrolase; hypothetical protein 1176400 4603224 Sama_0972 Shewanella amazonensis SB2B hypothetical protein YP_926849.1 1175591 D 326297 CDS YP_926850.1 119774110 4603225 1176746..1177519 1 NC_008700.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1177519 4603225 Sama_0973 Shewanella amazonensis SB2B deoxyribose-phosphate aldolase YP_926850.1 1176746 D 326297 CDS YP_926851.1 119774111 4603226 1177666..1178997 1 NC_008700.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1178997 deoA 4603226 deoA Shewanella amazonensis SB2B thymidine phosphorylase YP_926851.1 1177666 D 326297 CDS YP_926852.1 119774112 4603227 1179009..1180232 1 NC_008700.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1180232 4603227 Sama_0975 Shewanella amazonensis SB2B phosphopentomutase YP_926852.1 1179009 D 326297 CDS YP_926853.1 119774113 4603228 1180325..1181035 1 NC_008700.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1181035 deoD 4603228 deoD Shewanella amazonensis SB2B purine nucleoside phosphorylase YP_926853.1 1180325 D 326297 CDS YP_926854.1 119774114 4603229 complement(1181164..1181988) 1 NC_008700.1 KEGG: son:SO1222 membrane protein; membrane protein 1181988 4603229 Sama_0977 Shewanella amazonensis SB2B membrane protein YP_926854.1 1181164 R 326297 CDS YP_926855.1 119774115 4603230 1182031..1182981 1 NC_008700.1 KEGG: son:SO1223 phosphoserine phosphatase; phosphoserine phosphatase 1182981 4603230 Sama_0978 Shewanella amazonensis SB2B phosphoserine phosphatase YP_926855.1 1182031 D 326297 CDS YP_926856.1 119774116 4603231 1183073..1184050 1 NC_008700.1 KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1184050 4603231 Sama_0979 Shewanella amazonensis SB2B alpha/beta hydrolase fold domain-containing protein YP_926856.1 1183073 D 326297 CDS YP_926857.1 119774117 4603232 complement(1184060..1186438) 1 NC_008700.1 KEGG: son:SO1225 hypothetical protein; hypothetical protein 1186438 4603232 Sama_0980 Shewanella amazonensis SB2B hypothetical protein YP_926857.1 1184060 R 326297 CDS YP_926858.1 119774118 4603233 1186543..1187907 1 NC_008700.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1187907 4603233 Sama_0981 Shewanella amazonensis SB2B DNA repair protein RadA YP_926858.1 1186543 D 326297 CDS YP_926859.1 119774119 4603234 complement(1187940..1188311) 1 NC_008700.1 KEGG: son:SO1227 hypothetical protein; hypothetical protein 1188311 4603234 Sama_0982 Shewanella amazonensis SB2B hypothetical protein YP_926859.1 1187940 R 326297 CDS YP_926860.1 119774120 4603235 1188516..1189226 1 NC_008700.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1189226 4603235 Sama_0983 Shewanella amazonensis SB2B DNA-binding transcriptional regulator TorR YP_926860.1 1188516 D 326297 CDS YP_926861.1 119774121 4603236 complement(1189216..1190253) 1 NC_008700.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 1190253 4603236 Sama_0984 Shewanella amazonensis SB2B TMAO reductase system periplasmic protein TorT YP_926861.1 1189216 R 326297 CDS YP_926862.1 119774122 4603237 1190309..1193230 1 NC_008700.1 KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; sensor histidine kinase/response regulator TorS 1193230 4603237 Sama_0985 Shewanella amazonensis SB2B sensor histidine kinase/response regulator TorS YP_926862.1 1190309 D 326297 CDS YP_926863.1 119774123 4603238 complement(1193315..1194022) 1 NC_008700.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1194022 torD 4603238 torD Shewanella amazonensis SB2B chaperone protein TorD YP_926863.1 1193315 R 326297 CDS YP_926864.1 119774124 4603239 complement(1194019..1196508) 1 NC_008700.1 KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase 1196508 4603239 Sama_0987 Shewanella amazonensis SB2B trimethylamine-N-oxide reductase YP_926864.1 1194019 R 326297 CDS YP_926865.1 119774125 4603240 complement(1196523..1197698) 1 NC_008700.1 KEGG: son:SO1233 tetraheme cytochrome c; tetraheme cytochrome c 1197698 4603240 Sama_0988 Shewanella amazonensis SB2B tetraheme cytochrome c YP_926865.1 1196523 R 326297 CDS YP_926866.1 119774126 4603241 complement(1197717..1197881) 1 NC_008700.1 KEGG: son:SO1234 warning TorE protein; warning TorE protein 1197881 4603241 Sama_0989 Shewanella amazonensis SB2B warning TorE protein YP_926866.1 1197717 R 326297 CDS YP_926867.1 119774127 4603242 complement(1197993..1198415) 1 NC_008700.1 KEGG: son:SO1237 acetoin utilization protein AcuB, putative; acetoin utilization protein AcuB 1198415 4603242 Sama_0990 Shewanella amazonensis SB2B acetoin utilization protein AcuB YP_926867.1 1197993 R 326297 CDS YP_926868.1 119774128 4603243 complement(1198452..1200212) 1 NC_008700.1 KEGG: son:SO1238 acyltransferase family protein; acyltransferase family protein 1200212 4603243 Sama_0991 Shewanella amazonensis SB2B acyltransferase family protein YP_926868.1 1198452 R 326297 CDS YP_926869.1 119774129 4603244 complement(1200226..1201074) 1 NC_008700.1 KEGG: son:SO1239 hypothetical protein; hypothetical protein 1201074 4603244 Sama_0992 Shewanella amazonensis SB2B hypothetical protein YP_926869.1 1200226 R 326297 CDS YP_926870.1 119774130 4603245 complement(1201160..1204912) 1 NC_008700.1 KEGG: cps:CPS_2607 GGDEF domain protein protein; ligand-binding sensor domain-containing protein 1204912 4603245 Sama_0993 Shewanella amazonensis SB2B ligand-binding sensor domain-containing protein YP_926870.1 1201160 R 326297 CDS YP_926871.1 119774131 4603246 complement(1205023..1206381) 1 NC_008700.1 KEGG: son:SO1245 hypothetical protein; hypothetical protein 1206381 4603246 Sama_0994 Shewanella amazonensis SB2B hypothetical protein YP_926871.1 1205023 R 326297 CDS YP_926872.1 119774132 4603247 complement(1206764..1208317) 1 NC_008700.1 KEGG: son:SO1385 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 1208317 4603247 Sama_0995 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_926872.1 1206764 R 326297 CDS YP_926873.1 119774133 4603248 1208635..1209339 1 NC_008700.1 KEGG: son:SO1247 hypothetical protein; hypothetical protein 1209339 4603248 Sama_0996 Shewanella amazonensis SB2B hypothetical protein YP_926873.1 1208635 D 326297 CDS YP_926874.1 119774134 4603249 complement(1209323..1210159) 1 NC_008700.1 KEGG: sdn:Sden_1038 peptidase U32; peptidase U32 1210159 4603249 Sama_0997 Shewanella amazonensis SB2B peptidase U32 YP_926874.1 1209323 R 326297 CDS YP_926875.1 119774135 4603250 complement(1210171..1211172) 1 NC_008700.1 KEGG: son:SO1249 peptidase, U32 family; U32 family peptidase 1211172 4603250 Sama_0998 Shewanella amazonensis SB2B U32 family peptidase YP_926875.1 1210171 R 326297 CDS YP_926876.1 119774136 4603251 1211316..1211828 1 NC_008700.1 KEGG: son:SO1250 hypothetical protein; hypothetical protein 1211828 4603251 Sama_0999 Shewanella amazonensis SB2B hypothetical protein YP_926876.1 1211316 D 326297 CDS YP_926877.1 119774137 4603252 1211970..1213034 1 NC_008700.1 KEGG: vvu:VV13195 multidrug resistance efflux pump; multidrug resistance efflux pump 1213034 4603252 Sama_1000 Shewanella amazonensis SB2B multidrug resistance efflux pump YP_926877.1 1211970 D 326297 CDS YP_926878.1 119774138 4603253 1213024..1214100 1 NC_008700.1 KEGG: vvu:VV20703 permease of the major facilitator superfamily; major facilitator superfamily permease 1214100 4603253 Sama_1001 Shewanella amazonensis SB2B major facilitator superfamily permease YP_926878.1 1213024 D 326297 CDS YP_926879.1 119774139 4603254 complement(1214144..1214395) 1 NC_008700.1 KEGG: son:SO1251 ferredoxin, 4Fe-4S; ferredoxin, 4Fe-4S 1214395 4603254 Sama_1002 Shewanella amazonensis SB2B ferredoxin, 4Fe-4S YP_926879.1 1214144 R 326297 CDS YP_926880.1 119774140 4603255 1214831..1215073 1 NC_008700.1 hypothetical protein 1215073 4603255 Sama_1003 Shewanella amazonensis SB2B hypothetical protein YP_926880.1 1214831 D 326297 CDS YP_926881.1 119774141 4603256 complement(1215224..1216621) 1 NC_008700.1 KEGG: son:SO1252 peptidase, U32 family; U32 family peptidase 1216621 4603256 Sama_1004 Shewanella amazonensis SB2B U32 family peptidase YP_926881.1 1215224 R 326297 CDS YP_926882.1 119774142 4603257 1216848..1217690 1 NC_008700.1 KEGG: sdn:Sden_1046 hypothetical protein; putative signal transduction protein 1217690 4603257 Sama_1005 Shewanella amazonensis SB2B putative signal transduction protein YP_926882.1 1216848 D 326297 CDS YP_926883.1 119774143 4603258 1217777..1219261 1 NC_008700.1 KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; cyclic nucleotide phosphodiesterase 1219261 4603258 Sama_1006 Shewanella amazonensis SB2B cyclic nucleotide phosphodiesterase YP_926883.1 1217777 D 326297 CDS YP_926884.1 119774144 4603259 complement(1219262..1219684) 1 NC_008700.1 KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 1219684 4603259 Sama_1007 Shewanella amazonensis SB2B 4-hydroxybenzoyl-CoA thioesterase YP_926884.1 1219262 R 326297 CDS YP_926885.1 119774145 4603260 complement(1219712..1220491) 1 NC_008700.1 KEGG: sdn:Sden_1052 conserved hypothetical amino acid ABC transporter; amino acid ABC transporter 1220491 4603260 Sama_1008 Shewanella amazonensis SB2B amino acid ABC transporter YP_926885.1 1219712 R 326297 CDS YP_926886.1 119774146 4603261 1220995..1224441 1 NC_008700.1 KEGG: sdn:Sden_2716 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1224441 4603261 Sama_1009 Shewanella amazonensis SB2B type IV pilin biogenesis protein YP_926886.1 1220995 D 326297 CDS YP_926887.1 119774147 4603262 1224431..1224763 1 NC_008700.1 hypothetical protein 1224763 4603262 Sama_1010 Shewanella amazonensis SB2B hypothetical protein YP_926887.1 1224431 D 326297 CDS YP_926888.1 119774148 4603263 complement(1224820..1225566) 1 NC_008700.1 KEGG: son:SO3481 hypothetical protein; hypothetical protein 1225566 4603263 Sama_1011 Shewanella amazonensis SB2B hypothetical protein YP_926888.1 1224820 R 326297 CDS YP_926889.1 119774149 4603264 complement(1225674..1226714) 1 NC_008700.1 KEGG: son:SO3480 hypothetical protein phosphatase; hypothetical protein 1226714 4603264 Sama_1012 Shewanella amazonensis SB2B hypothetical protein YP_926889.1 1225674 R 326297 CDS YP_926890.1 119774150 4603265 complement(1227104..1228771) 1 NC_008700.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1228771 4603265 Sama_1013 Shewanella amazonensis SB2B putative ABC transporter ATP-binding protein YP_926890.1 1227104 R 326297 CDS YP_926891.1 119774151 4603266 1229015..1230268 1 NC_008700.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1230268 glyA 4603266 glyA Shewanella amazonensis SB2B serine hydroxymethyltransferase YP_926891.1 1229015 D 326297 CDS YP_926892.1 119774152 4603267 1230372..1230821 1 NC_008700.1 KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1230821 nrdR 4603267 nrdR Shewanella amazonensis SB2B transcriptional regulator NrdR YP_926892.1 1230372 D 326297 CDS YP_926893.1 119774153 4603268 1230843..1231979 1 NC_008700.1 KEGG: son:SO3469 riboflavin biosynthesis protein RibD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1231979 4603268 Sama_1016 Shewanella amazonensis SB2B bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_926893.1 1230843 D 326297 CDS YP_926894.1 119774154 4603269 1232017..1232670 1 NC_008700.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1232670 4603269 Sama_1017 Shewanella amazonensis SB2B riboflavin synthase subunit alpha YP_926894.1 1232017 D 326297 CDS YP_926895.1 119774155 4603270 1232782..1233888 1 NC_008700.1 KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1233888 4603270 Sama_1018 Shewanella amazonensis SB2B 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_926895.1 1232782 D 326297 CDS YP_926896.1 119774156 4603271 1234022..1234498 1 NC_008700.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1234498 ribH 4603271 ribH Shewanella amazonensis SB2B 6,7-dimethyl-8-ribityllumazine synthase YP_926896.1 1234022 D 326297 CDS YP_926897.1 119774157 4603272 1234514..1234918 1 NC_008700.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1234918 nusB 4603272 nusB Shewanella amazonensis SB2B transcription antitermination protein NusB YP_926897.1 1234514 D 326297 CDS YP_926898.1 119774158 4603273 1234973..1235974 1 NC_008700.1 KEGG: son:SO3464 thiamin-monophosphate kinase; thiamine-phosphate kinase 1235974 4603273 Sama_1021 Shewanella amazonensis SB2B thiamine-phosphate kinase YP_926898.1 1234973 D 326297 CDS YP_926899.1 119774159 4603274 1235974..1236471 1 NC_008700.1 KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1236471 4603274 Sama_1022 Shewanella amazonensis SB2B phosphatidylglycerophosphatase YP_926899.1 1235974 D 326297 CDS YP_926900.1 119774160 4603275 1236632..1238221 1 NC_008700.1 KEGG: sdn:Sden_2190 protein of unknown function DUF107; membrane-bound serine protease 1238221 4603275 Sama_1023 Shewanella amazonensis SB2B membrane-bound serine protease YP_926900.1 1236632 D 326297 CDS YP_926901.1 119774161 4603276 1238214..1238996 1 NC_008700.1 KEGG: cps:CPS_2685 SPFH domain/band 7 family domain protein; hypothetical protein 1238996 4603276 Sama_1024 Shewanella amazonensis SB2B hypothetical protein YP_926901.1 1238214 D 326297 CDS YP_926902.1 119774162 4603277 complement(1238998..1240815) 1 NC_008700.1 KEGG: sdn:Sden_1376 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate enzyme-like TPP binding region 1240815 4603277 Sama_1025 Shewanella amazonensis SB2B thiamine pyrophosphate enzyme-like TPP binding region YP_926902.1 1238998 R 326297 CDS YP_926903.1 119774163 4603278 complement(1241013..1242677) 1 NC_008700.1 KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein 1242677 4603278 Sama_1026 Shewanella amazonensis SB2B recombination and repair protein YP_926903.1 1241013 R 326297 CDS YP_926904.1 119774164 4603279 complement(1242787..1243734) 1 NC_008700.1 KEGG: son:SO3461 transporter, putative; transporter 1243734 4603279 Sama_1027 Shewanella amazonensis SB2B transporter YP_926904.1 1242787 R 326297 CDS YP_926905.1 119774165 4603280 1243869..1244771 1 NC_008700.1 KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1244771 4603280 Sama_1028 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_926905.1 1243869 D 326297 CDS YP_926906.1 119774166 4603281 complement(1244768..1245010) 1 NC_008700.1 KEGG: son:SO3459 hypothetical protein; hypothetical protein 1245010 4603281 Sama_1029 Shewanella amazonensis SB2B hypothetical protein YP_926906.1 1244768 R 326297 CDS YP_926907.1 119774167 4603282 complement(1245033..1245638) 1 NC_008700.1 KEGG: son:SO3458 hypothetical protein; hypothetical protein 1245638 4603282 Sama_1030 Shewanella amazonensis SB2B hypothetical protein YP_926907.1 1245033 R 326297 CDS YP_926908.1 119774168 4603283 complement(1245628..1248453) 1 NC_008700.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1248453 4603283 Sama_1031 Shewanella amazonensis SB2B hybrid sensory histidine kinase BarA YP_926908.1 1245628 R 326297 CDS YP_926909.1 119774169 4603284 1248548..1249879 1 NC_008700.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1249879 rumA 4603284 rumA Shewanella amazonensis SB2B 23S rRNA 5-methyluridine methyltransferase YP_926909.1 1248548 D 326297 CDS YP_926910.1 119774170 4603285 1250012..1252216 1 NC_008700.1 KEGG: son:SO3455 GTP pyrophosphokinase; GTP diphosphokinase 1252216 4603285 Sama_1033 Shewanella amazonensis SB2B GTP diphosphokinase YP_926910.1 1250012 D 326297 CDS YP_926911.1 119774171 4603286 1252330..1253157 1 NC_008700.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1253157 mazG 4603286 mazG Shewanella amazonensis SB2B nucleoside triphosphate pyrophosphohydrolase YP_926911.1 1252330 D 326297 CDS YP_926912.1 119774172 4603287 1253255..1254892 1 NC_008700.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1254892 pyrG 4603287 pyrG Shewanella amazonensis SB2B CTP synthetase YP_926912.1 1253255 D 326297 CDS YP_926913.1 119774173 4603288 1255111..1256406 1 NC_008700.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1256406 eno 4603288 eno Shewanella amazonensis SB2B phosphopyruvate hydratase YP_926913.1 1255111 D 326297 CDS YP_926914.1 119774174 4603289 1256588..1256905 1 NC_008700.1 KEGG: son:SO3439 cell division protein FtsB; cell division protein FtsB 1256905 4603289 Sama_1037 Shewanella amazonensis SB2B cell division protein FtsB YP_926914.1 1256588 D 326297 CDS YP_926915.1 119774175 4603290 1256902..1257618 1 NC_008700.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1257618 ispD 4603290 ispD Shewanella amazonensis SB2B 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_926915.1 1256902 D 326297 CDS YP_926916.1 119774176 4603291 1257628..1258110 1 NC_008700.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1258110 ispF 4603291 ispF Shewanella amazonensis SB2B 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_926916.1 1257628 D 326297 CDS YP_926917.1 119774177 4603292 1258107..1259189 1 NC_008700.1 KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 1259189 4603292 Sama_1040 Shewanella amazonensis SB2B pseudouridylate synthase YP_926917.1 1258107 D 326297 CDS YP_926918.1 119774178 4603293 1259170..1259916 1 NC_008700.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1259916 surE 4603293 surE Shewanella amazonensis SB2B stationary phase survival protein SurE YP_926918.1 1259170 D 326297 CDS YP_926919.1 119774179 4603294 1259913..1260548 1 NC_008700.1 KEGG: sdn:Sden_1202 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1260548 4603294 Sama_1042 Shewanella amazonensis SB2B protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_926919.1 1259913 D 326297 CDS YP_926920.1 119774180 4603295 1260578..1261468 1 NC_008700.1 KEGG: son:SO3433 lipoprotein NlpD; lipoprotein NlpD 1261468 4603295 Sama_1043 Shewanella amazonensis SB2B lipoprotein NlpD YP_926920.1 1260578 D 326297 CDS YP_926921.1 119774181 4603296 1261552..1262535 1 NC_008700.1 KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase sigma-38 factor 1262535 4603296 Sama_1044 Shewanella amazonensis SB2B RNA polymerase sigma-38 factor YP_926921.1 1261552 D 326297 CDS YP_926922.1 119774182 4603297 complement(1262651..1265215) 1 NC_008700.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1265215 4603297 Sama_1045 Shewanella amazonensis SB2B DNA mismatch repair protein MutS YP_926922.1 1262651 R 326297 CDS YP_926923.1 119774183 4603298 1265502..1266569 1 NC_008700.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1266569 recA 4603298 recA Shewanella amazonensis SB2B recombinase A YP_926923.1 1265502 D 326297 CDS YP_926924.1 119774184 4603299 1266581..1267018 1 NC_008700.1 KEGG: son:SO3429 regulatory protein RecX; hypothetical protein 1267018 4603299 Sama_1047 Shewanella amazonensis SB2B hypothetical protein YP_926924.1 1266581 D 326297 CDS YP_926925.1 119774185 4603300 1267153..1269855 1 NC_008700.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1269855 alaS 4603300 alaS Shewanella amazonensis SB2B alanyl-tRNA synthetase YP_926925.1 1267153 D 326297 CDS YP_926926.1 119774186 4603301 1269889..1271100 1 NC_008700.1 KEGG: son:SO3427 aspartokinase; aspartate kinase 1271100 4603301 Sama_1049 Shewanella amazonensis SB2B aspartate kinase YP_926926.1 1269889 D 326297 CDS YP_926927.1 119774187 4603302 1271214..1271408 1 NC_008700.1 KEGG: son:SO3426 carbon storage regulator; carbon storage regulator 1271408 4603302 Sama_1050 Shewanella amazonensis SB2B carbon storage regulator YP_926927.1 1271214 D 326297 CDS YP_926928.1 119774188 4605946 1272910..1273167 1 NC_008700.1 KEGG: cps:CPS_1048 oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 1273167 4605946 Sama_1051 Shewanella amazonensis SB2B oxaloacetate decarboxylase subunit gamma YP_926928.1 1272910 D 326297 CDS YP_926929.1 119774189 4603304 1273164..1274963 1 NC_008700.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1274963 4603304 Sama_1052 Shewanella amazonensis SB2B oxaloacetate decarboxylase YP_926929.1 1273164 D 326297 CDS YP_926930.1 119774190 4603305 1274973..1276103 1 NC_008700.1 KEGG: vpa:VP2543 oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase 1276103 4603305 Sama_1053 Shewanella amazonensis SB2B oxaloacetate decarboxylase YP_926930.1 1274973 D 326297 CDS YP_926931.1 119774191 4603306 complement(1276155..1276328) 1 NC_008700.1 KEGG: pat:Patl_3131 membrane protein; membrane protein 1276328 4603306 Sama_1054 Shewanella amazonensis SB2B membrane protein YP_926931.1 1276155 R 326297 CDS YP_926932.1 119774192 4603307 complement(1276475..1277728) 1 NC_008700.1 KEGG: sdn:Sden_1216 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1277728 4603307 Sama_1055 Shewanella amazonensis SB2B sodium:dicarboxylate symporter YP_926932.1 1276475 R 326297 CDS YP_926933.1 119774193 4603308 1277977..1278393 1 NC_008700.1 KEGG: son:SO3561 hypothetical protein; hypothetical protein 1278393 4603308 Sama_1056 Shewanella amazonensis SB2B hypothetical protein YP_926933.1 1277977 D 326297 CDS YP_926934.1 119774194 4603309 1278505..1281342 1 NC_008700.1 KEGG: son:SO3560 peptidase, M16 family; M16 family peptidase 1281342 4603309 Sama_1057 Shewanella amazonensis SB2B M16 family peptidase YP_926934.1 1278505 D 326297 CDS YP_926935.1 119774195 4603310 1281529..1283109 1 NC_008700.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1283109 4603310 Sama_1058 Shewanella amazonensis SB2B glutamate--cysteine ligase YP_926935.1 1281529 D 326297 CDS YP_926936.1 119774196 4603311 1283094..1283510 1 NC_008700.1 KEGG: son:SO3558 hypothetical protein; hypothetical protein 1283510 4603311 Sama_1059 Shewanella amazonensis SB2B hypothetical protein YP_926936.1 1283094 D 326297 CDS YP_926937.1 119774197 4603312 1283617..1284228 1 NC_008700.1 KEGG: son:SO3557 hypothetical protein; hypothetical protein 1284228 4603312 Sama_1060 Shewanella amazonensis SB2B hypothetical protein YP_926937.1 1283617 D 326297 CDS YP_926938.1 119774198 4603313 complement(1284363..1286669) 1 NC_008700.1 KEGG: son:SO1002 hypothetical protein; hypothetical protein 1286669 4603313 Sama_1061 Shewanella amazonensis SB2B hypothetical protein YP_926938.1 1284363 R 326297 CDS YP_926939.1 119774199 4603314 complement(1286707..1288023) 1 NC_008700.1 KEGG: sdn:Sden_1222 GGDEF domain protein; diguanylate cyclase 1288023 4603314 Sama_1062 Shewanella amazonensis SB2B diguanylate cyclase YP_926939.1 1286707 R 326297 CDS YP_926940.1 119774200 4603315 complement(1288065..1289150) 1 NC_008700.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1289150 4603315 Sama_1063 Shewanella amazonensis SB2B phosphoribosylaminoimidazole carboxylase ATPase subunit YP_926940.1 1288065 R 326297 CDS YP_926941.1 119774201 4603316 complement(1289153..1289644) 1 NC_008700.1 KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylaminoimidazole carboxylase 1289644 4603316 Sama_1064 Shewanella amazonensis SB2B phosphoribosylaminoimidazole carboxylase YP_926941.1 1289153 R 326297 CDS YP_926942.1 119774202 4603317 complement(1289796..1290938) 1 NC_008700.1 KEGG: rso:RSc0932 putative membrane-bound dehydrogenase oxidoreductase protein; putative membrane-bound dehydrogenase oxidoreductase protein 1290938 4603317 Sama_1065 Shewanella amazonensis SB2B putative membrane-bound dehydrogenase oxidoreductase protein YP_926942.1 1289796 R 326297 CDS YP_926943.1 119774203 4603318 complement(1291055..1292437) 1 NC_008700.1 KEGG: vvy:VV3101 hypothetical protein; hypothetical protein 1292437 4603318 Sama_1066 Shewanella amazonensis SB2B hypothetical protein YP_926943.1 1291055 R 326297 CDS YP_926944.1 119774204 4603319 complement(1292550..1294268) 1 NC_008700.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1294268 4603319 Sama_1067 Shewanella amazonensis SB2B putative sulfate transporter YchM YP_926944.1 1292550 R 326297 CDS YP_926945.1 119774205 4603320 1294521..1295117 1 NC_008700.1 KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1295117 4603320 Sama_1068 Shewanella amazonensis SB2B ECF subfamily RNA polymerase sigma-24 factor YP_926945.1 1294521 D 326297 CDS YP_926946.1 119774206 4603321 1295107..1295865 1 NC_008700.1 KEGG: son:SO3550 hypothetical protein; hypothetical protein 1295865 4603321 Sama_1069 Shewanella amazonensis SB2B hypothetical protein YP_926946.1 1295107 D 326297 CDS YP_926947.1 119774207 4603322 1295905..1296750 1 NC_008700.1 KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1296750 4603322 Sama_1070 Shewanella amazonensis SB2B extracellular solute-binding protein YP_926947.1 1295905 D 326297 CDS YP_926948.1 119774208 4603323 complement(1296772..1297956) 1 NC_008700.1 KEGG: son:SO1387 HD domain protein; response regulator receiver protein 1297956 4603323 Sama_1071 Shewanella amazonensis SB2B response regulator receiver protein YP_926948.1 1296772 R 326297 CDS YP_926949.2 162139900 4603324 complement(1298478..1299389) 1 NC_008700.1 Required for efficient pilin antigenic variation; recombination associated protein 1299389 rdgC 4603324 rdgC Shewanella amazonensis SB2B recombination associated protein YP_926949.2 1298478 R 326297 CDS YP_926950.1 119774210 4603325 1299682..1300608 1 NC_008700.1 KEGG: sdn:Sden_2690 porin, gram-negative type; porin 1300608 4603325 Sama_1073 Shewanella amazonensis SB2B porin YP_926950.1 1299682 D 326297 CDS YP_926951.1 119774211 4603326 1300792..1301481 1 NC_008700.1 KEGG: son:SO1558 phosphate regulon response regulator PhoB; response regulator receiver protein 1301481 4603326 Sama_1074 Shewanella amazonensis SB2B response regulator receiver protein YP_926951.1 1300792 D 326297 CDS YP_926952.1 119774212 4603327 1301553..1302857 1 NC_008700.1 KEGG: son:SO1559 phosphate regulon sensor protein PhoR; phosphate regulon sensor protein PhoR 1302857 4603327 Sama_1075 Shewanella amazonensis SB2B phosphate regulon sensor protein PhoR YP_926952.1 1301553 D 326297 CDS YP_926953.1 119774213 4603328 1303044..1304015 1 NC_008700.1 KEGG: son:SO1560 phosphate-binding protein; phosphate-binding protein 1304015 4603328 Sama_1076 Shewanella amazonensis SB2B phosphate-binding protein YP_926953.1 1303044 D 326297 CDS YP_926954.1 119774214 4603329 complement(1304198..1305103) 1 NC_008700.1 KEGG: cps:CPS_1458 microbial collagenase; collagenase 1305103 4603329 Sama_1077 Shewanella amazonensis SB2B collagenase YP_926954.1 1304198 R 326297 CDS YP_926955.1 119774215 4603330 1305235..1307031 1 NC_008700.1 KEGG: son:SO1561 peptidase, M1 family; M1 family peptidase 1307031 4603330 Sama_1078 Shewanella amazonensis SB2B M1 family peptidase YP_926955.1 1305235 D 326297 CDS YP_926956.1 119774216 4603331 1307198..1307464 1 NC_008700.1 hypothetical protein 1307464 4603331 Sama_1079 Shewanella amazonensis SB2B hypothetical protein YP_926956.1 1307198 D 326297 CDS YP_926957.1 119774217 4603332 complement(1307678..1308172) 1 NC_008700.1 KEGG: bce:BC2114 glutathione peroxidase; glutathione peroxidase 1308172 4603332 Sama_1080 Shewanella amazonensis SB2B glutathione peroxidase YP_926957.1 1307678 R 326297 CDS YP_926958.1 119774218 4603333 1308334..1309698 1 NC_008700.1 KEGG: son:SO1565 magnesium transporter, putative; magnesium transporter 1309698 4603333 Sama_1081 Shewanella amazonensis SB2B magnesium transporter YP_926958.1 1308334 D 326297 CDS YP_926959.1 119774219 4603334 1309695..1310219 1 NC_008700.1 KEGG: son:SO1566 acetyltransferase, GNAT family; acetyltransferase 1310219 4603334 Sama_1082 Shewanella amazonensis SB2B acetyltransferase YP_926959.1 1309695 D 326297 CDS YP_926960.1 119774220 4603335 complement(1310191..1311063) 1 NC_008700.1 KEGG: son:SO1569 integral membrane domain protein; integral membrane domain-containing protein 1311063 4603335 Sama_1083 Shewanella amazonensis SB2B integral membrane domain-containing protein YP_926960.1 1310191 R 326297 CDS YP_926961.1 119774221 4603336 1311233..1312921 1 NC_008700.1 KEGG: son:SO1570 GGDEF domain protein protein; diguanylate cyclase 1312921 4603336 Sama_1084 Shewanella amazonensis SB2B diguanylate cyclase YP_926961.1 1311233 D 326297 CDS YP_926962.1 119774222 4603337 complement(1313171..1313332) 1 NC_008700.1 KEGG: son:SO1572 hypothetical protein; hypothetical protein 1313332 4603337 Sama_1085 Shewanella amazonensis SB2B hypothetical protein YP_926962.1 1313171 R 326297 CDS YP_926963.1 119774223 4603338 complement(1313537..1314901) 1 NC_008700.1 KEGG: sdn:Sden_2643 Fmu (Sun); hypothetical protein 1314901 4603338 Sama_1086 Shewanella amazonensis SB2B hypothetical protein YP_926963.1 1313537 R 326297 CDS YP_926964.1 119774224 4603339 complement(1314986..1315654) 1 NC_008700.1 KEGG: son:SO1576 glutathione S-transferase family protein; glutathione S-transferase family protein 1315654 4603339 Sama_1087 Shewanella amazonensis SB2B glutathione S-transferase family protein YP_926964.1 1314986 R 326297 CDS YP_926965.1 119774225 4603340 complement(1315666..1316295) 1 NC_008700.1 KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase family protein 1316295 4603340 Sama_1088 Shewanella amazonensis SB2B glutathione S-transferase family protein YP_926965.1 1315666 R 326297 CDS YP_926966.1 119774226 4603341 1316410..1316982 1 NC_008700.1 KEGG: son:SO1578 transcriptional regulator, TetR family; TetR family transcriptional regulator 1316982 4603341 Sama_1089 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_926966.1 1316410 D 326297 CDS YP_926967.1 119774227 4603342 complement(1317002..1317673) 1 NC_008700.1 KEGG: sdn:Sden_2642 hypothetical protein; hypothetical protein 1317673 4603342 Sama_1090 Shewanella amazonensis SB2B hypothetical protein YP_926967.1 1317002 R 326297 CDS YP_926968.1 119774228 4603343 1317774..1318340 1 NC_008700.1 KEGG: son:SO1581 PhnA protein; PhnA protein 1318340 4603343 Sama_1091 Shewanella amazonensis SB2B PhnA protein YP_926968.1 1317774 D 326297 CDS YP_926969.1 119774229 4603344 1318543..1319559 1 NC_008700.1 KEGG: son:SO1583 hypothetical protein; hypothetical protein 1319559 4603344 Sama_1092 Shewanella amazonensis SB2B hypothetical protein YP_926969.1 1318543 D 326297 CDS YP_926970.1 119774230 4603345 1319569..1320177 1 NC_008700.1 KEGG: sdn:Sden_2637 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1320177 4603345 Sama_1093 Shewanella amazonensis SB2B fumarylacetoacetate (FAA) hydrolase YP_926970.1 1319569 D 326297 CDS YP_926971.1 119774231 4603346 1320269..1321003 1 NC_008700.1 KEGG: dvu:DVUA0150 bacterial extracellular solute-binding protein, family 3; hypothetical protein 1321003 4603346 Sama_1094 Shewanella amazonensis SB2B hypothetical protein YP_926971.1 1320269 D 326297 CDS YP_926972.1 119774232 4603347 complement(1321011..1321538) 1 NC_008700.1 KEGG: vfi:VF0983 hypothetical protein; hypothetical protein 1321538 4603347 Sama_1095 Shewanella amazonensis SB2B hypothetical protein YP_926972.1 1321011 R 326297 CDS YP_926973.1 119774233 4603348 1321785..1322393 1 NC_008700.1 KEGG: son:SO1589 hypothetical protein; hypothetical protein 1322393 4603348 Sama_1096 Shewanella amazonensis SB2B hypothetical protein YP_926973.1 1321785 D 326297 CDS YP_926974.1 119774234 4603349 complement(1322396..1322707) 1 NC_008700.1 KEGG: son:SO1588 hypothetical protein; hypothetical protein 1322707 4603349 Sama_1097 Shewanella amazonensis SB2B hypothetical protein YP_926974.1 1322396 R 326297 CDS YP_926975.1 119774235 4603350 1322789..1323499 1 NC_008700.1 hypothetical protein 1323499 4603350 Sama_1098 Shewanella amazonensis SB2B hypothetical protein YP_926975.1 1322789 D 326297 CDS YP_926976.1 119774236 4603351 1323593..1324483 1 NC_008700.1 KEGG: vvy:VVA1444 hypothetical protein; hypothetical protein 1324483 4603351 Sama_1099 Shewanella amazonensis SB2B hypothetical protein YP_926976.1 1323593 D 326297 CDS YP_926977.1 119774237 4603352 1324483..1324902 1 NC_008700.1 KEGG: son:SO3831 acetyltransferase, GNAT family; acetyltransferase 1324902 4603352 Sama_1100 Shewanella amazonensis SB2B acetyltransferase YP_926977.1 1324483 D 326297 CDS YP_926978.1 119774238 4603353 1324974..1326563 1 NC_008700.1 KEGG: son:SO2198 hypothetical aminopeptidase; aminopeptidase 1326563 4603353 Sama_1101 Shewanella amazonensis SB2B aminopeptidase YP_926978.1 1324974 D 326297 CDS YP_926979.1 119774239 4603354 complement(1326641..1335187) 1 NC_008700.1 KEGG: cps:CPS_2152 thrombospondin type 3 repeat family protein/Calx-beta domain protein; ATPase 1335187 4603354 Sama_1102 Shewanella amazonensis SB2B ATPase YP_926979.1 1326641 R 326297 CDS YP_926980.1 119774240 4603355 complement(1335418..1336854) 1 NC_008700.1 KEGG: xcv:XCV0335 two-component system sensor protein; signal transduction histidine kinase-like protein 1336854 4603355 Sama_1103 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926980.1 1335418 R 326297 CDS YP_926981.1 119774241 4603356 complement(1337018..1337686) 1 NC_008700.1 KEGG: hch:HCH_00064 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator receiver protein 1337686 4603356 Sama_1104 Shewanella amazonensis SB2B response regulator receiver protein YP_926981.1 1337018 R 326297 CDS YP_926982.1 119774242 4603357 complement(1337715..1341140) 1 NC_008700.1 KEGG: sde:Sde_0667 response regulator receiver domain protein (CheY-like); signal transduction histidine kinase-like protein 1341140 4603357 Sama_1105 Shewanella amazonensis SB2B signal transduction histidine kinase-like protein YP_926982.1 1337715 R 326297 CDS YP_926983.1 119774243 4603358 complement(1341377..1341832) 1 NC_008700.1 KEGG: vvy:VVA1430 histone acetyltransferase HPA2; histone acetyltransferase HPA2 1341832 4603358 Sama_1106 Shewanella amazonensis SB2B histone acetyltransferase HPA2 YP_926983.1 1341377 R 326297 CDS YP_926984.1 119774244 4603359 1342217..1342816 1 NC_008700.1 KEGG: vvy:VVA1671 fructose-2;6-bisphosphatase; fructose-2;6-bisphosphatase 1342816 4603359 Sama_1107 Shewanella amazonensis SB2B fructose-2;6-bisphosphatase YP_926984.1 1342217 D 326297 CDS YP_926985.1 119774245 4603360 complement(1342969..1344999) 1 NC_008700.1 KEGG: pha:PSHAa2848 alpha-glucosidase; alpha-glucosidase 1344999 4603360 Sama_1108 Shewanella amazonensis SB2B alpha-glucosidase YP_926985.1 1342969 R 326297 CDS YP_926986.1 119774246 4603361 1345491..1345823 1 NC_008700.1 KEGG: ilo:IL1490 hypothetical protein; hypothetical protein 1345823 4603361 Sama_1109 Shewanella amazonensis SB2B hypothetical protein YP_926986.1 1345491 D 326297 CDS YP_926987.1 119774247 4603362 complement(1345977..1346348) 1 NC_008700.1 hypothetical protein 1346348 4603362 Sama_1110 Shewanella amazonensis SB2B hypothetical protein YP_926987.1 1345977 R 326297 CDS YP_926988.1 119774248 4603363 1347037..1348848 1 NC_008700.1 KEGG: tko:TK1395 predicted ATP-dependent endonuclease, OLD family; ATP-dependent OLD family endonuclease 1348848 4603363 Sama_1111 Shewanella amazonensis SB2B ATP-dependent OLD family endonuclease YP_926988.1 1347037 D 326297 CDS YP_926989.1 119774249 4603364 complement(1349680..1351293) 1 NC_008700.1 KEGG: ppr:PBPRA1457 omega-3 polyunsaturated fatty acid synthase PfaD; omega-3 polyunsaturated fatty acid synthase PfaD 1351293 4603364 Sama_1112 Shewanella amazonensis SB2B omega-3 polyunsaturated fatty acid synthase PfaD YP_926989.1 1349680 R 326297 CDS YP_926990.1 119774250 4603365 complement(1351378..1357077) 1 NC_008700.1 KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; omega-3 polyunsaturated fatty acid synthase PfaC 1357077 4603365 Sama_1113 Shewanella amazonensis SB2B omega-3 polyunsaturated fatty acid synthase PfaC YP_926990.1 1351378 R 326297 CDS YP_926991.1 119774251 4603366 complement(1357155..1359218) 1 NC_008700.1 KEGG: sdn:Sden_2628 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 1359218 4603366 Sama_1114 Shewanella amazonensis SB2B omega-3 polyunsaturated fatty acid synthase PfaB YP_926991.1 1357155 R 326297 CDS YP_926992.1 119774252 4603367 complement(1359215..1366843) 1 NC_008700.1 KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; erythronolide synthase 1366843 4603367 Sama_1115 Shewanella amazonensis SB2B erythronolide synthase YP_926992.1 1359215 R 326297 CDS YP_926993.1 119774253 4603368 complement(1366840..1367658) 1 NC_008700.1 KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator 1367658 4603368 Sama_1116 Shewanella amazonensis SB2B transcriptional regulator YP_926993.1 1366840 R 326297 CDS YP_926994.1 119774254 4603369 1367949..1368308 1 NC_008700.1 hypothetical protein 1368308 4603369 Sama_1117 Shewanella amazonensis SB2B hypothetical protein YP_926994.1 1367949 D 326297 CDS YP_926995.1 119774255 4603370 1368423..1370471 1 NC_008700.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1370471 4603370 Sama_1118 Shewanella amazonensis SB2B elongation factor G YP_926995.1 1368423 D 326297 CDS YP_926996.1 119774256 4603371 1370733..1371587 1 NC_008700.1 KEGG: sdn:Sden_2625 4'-phosphopantetheinyl transferase; phosphopantetheinyl transferase-like protein 1371587 4603371 Sama_1119 Shewanella amazonensis SB2B phosphopantetheinyl transferase-like protein YP_926996.1 1370733 D 326297 CDS YP_926997.1 119774257 4603372 complement(1371697..1372587) 1 NC_008700.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1372587 queF 4603372 queF Shewanella amazonensis SB2B 7-cyano-7-deazaguanine reductase YP_926997.1 1371697 R 326297 CDS YP_926998.1 119774258 4603373 1372614..1373261 1 NC_008700.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1373261 4603373 Sama_1121 Shewanella amazonensis SB2B SecY interacting protein Syd YP_926998.1 1372614 D 326297 CDS YP_926999.1 119774259 4603374 complement(1373362..1374135) 1 NC_008700.1 KEGG: sdn:Sden_1515 hypothetical protein; hypothetical protein 1374135 4603374 Sama_1122 Shewanella amazonensis SB2B hypothetical protein YP_926999.1 1373362 R 326297 CDS YP_927000.1 119774260 4603375 complement(1374135..1374443) 1 NC_008700.1 KEGG: son:SO1611 hypothetical protein; hypothetical protein 1374443 4603375 Sama_1123 Shewanella amazonensis SB2B hypothetical protein YP_927000.1 1374135 R 326297 CDS YP_927001.1 119774261 4603376 1374588..1374944 1 NC_008700.1 KEGG: son:SO1612 hypothetical protein; hypothetical protein 1374944 4603376 Sama_1124 Shewanella amazonensis SB2B hypothetical protein YP_927001.1 1374588 D 326297 CDS YP_927002.1 119774262 4603377 complement(1374946..1375176) 1 NC_008700.1 KEGG: son:SO1613 hypothetical protein; hypothetical protein 1375176 4603377 Sama_1125 Shewanella amazonensis SB2B hypothetical protein YP_927002.1 1374946 R 326297 CDS YP_927003.1 119774263 4603378 1375311..1375952 1 NC_008700.1 KEGG: son:SO1614 acetyltransferase, GNAT family; acetyltransferase 1375952 4603378 Sama_1126 Shewanella amazonensis SB2B acetyltransferase YP_927003.1 1375311 D 326297 CDS YP_927004.1 119774264 4603379 1375942..1376256 1 NC_008700.1 KEGG: pae:PA3216 hypothetical protein; hypothetical protein 1376256 4603379 Sama_1127 Shewanella amazonensis SB2B hypothetical protein YP_927004.1 1375942 D 326297 CDS YP_927005.1 119774265 4603380 complement(1378196..1378585) 1 NC_008700.1 KEGG: son:SO1617 hypothetical protein; hypothetical protein 1378585 4603380 Sama_1128 Shewanella amazonensis SB2B hypothetical protein YP_927005.1 1378196 R 326297 CDS YP_927006.1 119774266 4603381 complement(1378582..1379595) 1 NC_008700.1 KEGG: son:SO1618 hypothetical protein; hypothetical protein 1379595 4603381 Sama_1129 Shewanella amazonensis SB2B hypothetical protein YP_927006.1 1378582 R 326297 CDS YP_927007.1 119774267 4603382 1379627..1380034 1 NC_008700.1 KEGG: sdn:Sden_1545 protein of unknown function DUF446; hypothetical protein 1380034 4603382 Sama_1130 Shewanella amazonensis SB2B hypothetical protein YP_927007.1 1379627 D 326297 CDS YP_927008.1 119774268 4603383 1380060..1380836 1 NC_008700.1 KEGG: shm:Shewmr7_2717 pseudouridylate synthase; pseudouridylate synthase 1380836 4603383 Sama_1131 Shewanella amazonensis SB2B pseudouridylate synthase YP_927008.1 1380060 D 326297 CDS YP_927009.1 119774269 4603384 1381214..1381678 1 NC_008700.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1381678 4603384 Sama_1132 Shewanella amazonensis SB2B flavodoxin YP_927009.1 1381214 D 326297 CDS YP_927010.1 119774270 4603385 1381642..1383099 1 NC_008700.1 KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system glucose-specific transporter subunit IIBC 1383099 4603385 Sama_1133 Shewanella amazonensis SB2B PTS system glucose-specific transporter subunit IIBC YP_927010.1 1381642 D 326297 CDS YP_927011.1 119774271 4603386 1383259..1384104 1 NC_008700.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1384104 purU 4603386 purU Shewanella amazonensis SB2B formyltetrahydrofolate deformylase YP_927011.1 1383259 D 326297 CDS YP_927012.1 119774272 4603387 complement(1384145..1384492) 1 NC_008700.1 KEGG: sdn:Sden_1550 hypothetical protein; hypothetical protein 1384492 4603387 Sama_1135 Shewanella amazonensis SB2B hypothetical protein YP_927012.1 1384145 R 326297 CDS YP_927013.1 119774273 4603388 complement(1384757..1385581) 1 NC_008700.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1385581 dapD 4603388 dapD Shewanella amazonensis SB2B 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_927013.1 1384757 R 326297 CDS YP_927014.1 119774274 4603389 complement(1385608..1388178) 1 NC_008700.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1388178 4603389 Sama_1137 Shewanella amazonensis SB2B PII uridylyl-transferase YP_927014.1 1385608 R 326297 CDS YP_927015.1 119774275 4603390 complement(1388187..1388987) 1 NC_008700.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1388987 4603390 Sama_1138 Shewanella amazonensis SB2B methionine aminopeptidase YP_927015.1 1388187 R 326297 CDS YP_927016.1 119774276 4603391 1389252..1390028 1 NC_008700.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1390028 rpsB 4603391 rpsB Shewanella amazonensis SB2B 30S ribosomal protein S2 YP_927016.1 1389252 D 326297 CDS YP_927017.1 119774277 4603392 1390156..1391007 1 NC_008700.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1391007 tsf 4603392 tsf Shewanella amazonensis SB2B elongation factor Ts YP_927017.1 1390156 D 326297 CDS YP_927018.1 119774278 4603393 1391076..1391801 1 NC_008700.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1391801 pyrH 4603393 pyrH Shewanella amazonensis SB2B uridylate kinase YP_927018.1 1391076 D 326297 CDS YP_927019.1 119774279 4603394 1391845..1392402 1 NC_008700.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1392402 frr 4603394 frr Shewanella amazonensis SB2B ribosome recycling factor YP_927019.1 1391845 D 326297 CDS YP_927020.1 119774280 4603395 1392485..1393285 1 NC_008700.1 KEGG: son:SO1633 undecaprenyl diphosphate synthase; di-trans,poly-cis-decaprenylcistransferase 1393285 4603395 Sama_1143 Shewanella amazonensis SB2B di-trans,poly-cis-decaprenylcistransferase YP_927020.1 1392485 D 326297 CDS YP_927021.1 119774281 4603396 1393310..1394167 1 NC_008700.1 KEGG: sdn:Sden_1559 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1394167 4603396 Sama_1144 Shewanella amazonensis SB2B phosphatidate cytidylyltransferase YP_927021.1 1393310 D 326297 CDS YP_927022.1 119774282 4603397 1394170..1395357 1 NC_008700.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1395357 4603397 Sama_1145 Shewanella amazonensis SB2B 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_927022.1 1394170 D 326297 CDS YP_927023.1 119774283 4603398 1395382..1396752 1 NC_008700.1 KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; membrane-associated zinc metalloprotease 1396752 4603398 Sama_1146 Shewanella amazonensis SB2B membrane-associated zinc metalloprotease YP_927023.1 1395382 D 326297 CDS YP_927024.1 119774284 4603399 1396733..1399267 1 NC_008700.1 KEGG: son:SO1637 bacterial surface antigen; surface antigen 1399267 4603399 Sama_1147 Shewanella amazonensis SB2B surface antigen YP_927024.1 1396733 D 326297 CDS YP_927025.1 119774285 4603400 1399321..1399827 1 NC_008700.1 KEGG: son:SO1638 outer membrane protein OmpH; outer membrane protein OmpH 1399827 4603400 Sama_1148 Shewanella amazonensis SB2B outer membrane protein OmpH YP_927025.1 1399321 D 326297 CDS YP_927026.1 119774286 4603401 1399831..1400856 1 NC_008700.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1400856 lpxD 4603401 lpxD Shewanella amazonensis SB2B UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_927026.1 1399831 D 326297 CDS YP_927027.1 119774287 4603402 1400901..1401362 1 NC_008700.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1401362 fabZ 4603402 fabZ Shewanella amazonensis SB2B (3R)-hydroxymyristoyl-ACP dehydratase YP_927027.1 1400901 D 326297 CDS YP_927028.1 119774288 4603403 1401359..1402129 1 NC_008700.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1402129 4603403 Sama_1151 Shewanella amazonensis SB2B UDP-N-acetylglucosamine acyltransferase YP_927028.1 1401359 D 326297 CDS YP_927029.1 119774289 4603404 1402156..1403337 1 NC_008700.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1403337 lpxB 4603404 lpxB Shewanella amazonensis SB2B lipid-A-disaccharide synthase YP_927029.1 1402156 D 326297 CDS YP_927030.1 119774290 4603405 1403337..1403957 1 NC_008700.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1403957 rnhB 4603405 rnhB Shewanella amazonensis SB2B ribonuclease HII YP_927030.1 1403337 D 326297 CDS YP_927031.1 119774291 4603406 1404117..1407590 1 NC_008700.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1407590 dnaE 4603406 dnaE Shewanella amazonensis SB2B DNA polymerase III subunit alpha YP_927031.1 1404117 D 326297 CDS YP_927032.1 119774292 4603407 1407601..1409094 1 NC_008700.1 KEGG: son:SO1645 cell cycle protein MesJ; cell cycle protein MesJ 1409094 4603407 Sama_1155 Shewanella amazonensis SB2B cell cycle protein MesJ YP_927032.1 1407601 D 326297 CDS YP_927033.1 119774293 4603408 complement(1409156..1410265) 1 NC_008700.1 KEGG: vvu:VV11783 acetyltransferase; acetyltransferase 1410265 4603408 Sama_1156 Shewanella amazonensis SB2B acetyltransferase YP_927033.1 1409156 R 326297 CDS YP_927034.1 119774294 4603409 1410321..1411772 1 NC_008700.1 KEGG: vvu:VV11782 glutathione synthase; glutathione synthase 1411772 4603409 Sama_1157 Shewanella amazonensis SB2B glutathione synthase YP_927034.1 1410321 D 326297 CDS YP_927035.1 119774295 4603410 complement(1411827..1412738) 1 NC_008700.1 KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 1412738 4603410 Sama_1158 Shewanella amazonensis SB2B diguanylate cyclase YP_927035.1 1411827 R 326297 CDS YP_927036.1 119774296 4603411 1412896..1414842 1 NC_008700.1 KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; glutathione-regulated potassium-efflux system protein KefB 1414842 4603411 Sama_1159 Shewanella amazonensis SB2B glutathione-regulated potassium-efflux system protein KefB YP_927036.1 1412896 D 326297 CDS YP_927037.1 119774297 4603412 complement(1414902..1416026) 1 NC_008700.1 KEGG: son:SO3155 hypothetical protein; hypothetical protein 1416026 4603412 Sama_1160 Shewanella amazonensis SB2B hypothetical protein YP_927037.1 1414902 R 326297 CDS YP_927038.1 119774298 4603413 complement(1416155..1417873) 1 NC_008700.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1417873 4603413 Sama_1161 Shewanella amazonensis SB2B prolyl-tRNA synthetase YP_927038.1 1416155 R 326297 CDS YP_927039.1 119774299 4603414 complement(1417989..1419302) 1 NC_008700.1 KEGG: syn:sll1673 two-component response regulator; diguanylate cyclase 1419302 4603414 Sama_1162 Shewanella amazonensis SB2B diguanylate cyclase YP_927039.1 1417989 R 326297 CDS YP_927040.1 119774300 4603415 complement(1419322..1419936) 1 NC_008700.1 KEGG: sdn:Sden_2543 acetyltransferase, CysE/LacA/LpxA/NodL family; acetyltransferase 1419936 4603415 Sama_1163 Shewanella amazonensis SB2B acetyltransferase YP_927040.1 1419322 R 326297 CDS YP_927041.1 119774301 4603416 complement(1419926..1420663) 1 NC_008700.1 KEGG: sdn:Sden_2542 protein of unknown function UPF0066; hypothetical protein 1420663 4603416 Sama_1164 Shewanella amazonensis SB2B hypothetical protein YP_927041.1 1419926 R 326297 CDS YP_927042.1 119774302 4603417 complement(1420667..1421065) 1 NC_008700.1 KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein 1421065 4603417 Sama_1165 Shewanella amazonensis SB2B putative lipoprotein YP_927042.1 1420667 R 326297 CDS YP_927043.1 119774303 4603418 complement(1421126..1422385) 1 NC_008700.1 KEGG: son:SO3149 hypothetical protein; hypothetical protein 1422385 4603418 Sama_1166 Shewanella amazonensis SB2B hypothetical protein YP_927043.1 1421126 R 326297 CDS YP_927044.1 119774304 4603419 complement(1422385..1425441) 1 NC_008700.1 KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains; amidohydrolase 1425441 4603419 Sama_1167 Shewanella amazonensis SB2B amidohydrolase YP_927044.1 1422385 R 326297 CDS YP_927045.1 119774305 4603420 complement(1425587..1425979) 1 NC_008700.1 KEGG: son:SO3146 DNA-binding protein, H-NS family; H-NS family DNA-binding protein 1425979 4603420 Sama_1168 Shewanella amazonensis SB2B H-NS family DNA-binding protein YP_927045.1 1425587 R 326297 CDS YP_927046.1 119774306 4603421 1427006..1427755 1 NC_008700.1 KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 1427755 4603421 Sama_1169 Shewanella amazonensis SB2B electron transfer flavoprotein subunit beta YP_927046.1 1427006 D 326297 CDS YP_927047.1 119774307 4603422 1427757..1428680 1 NC_008700.1 KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1428680 4603422 Sama_1170 Shewanella amazonensis SB2B electron transfer flavoprotein subunit alpha YP_927047.1 1427757 D 326297 CDS YP_927048.1 119774308 4603423 1429044..1430606 1 NC_008700.1 KEGG: sdn:Sden_2537 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1430606 4603423 Sama_1171 Shewanella amazonensis SB2B Na+/H+ antiporter NhaC YP_927048.1 1429044 D 326297 CDS YP_927049.1 119774309 4603424 complement(1430689..1432845) 1 NC_008700.1 KEGG: son:SO3142 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 1432845 4603424 Sama_1172 Shewanella amazonensis SB2B peptidyl-dipeptidase Dcp YP_927049.1 1430689 R 326297 CDS YP_927050.1 119774310 4603425 1432999..1433577 1 NC_008700.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1433577 4603425 Sama_1173 Shewanella amazonensis SB2B thymidine kinase YP_927050.1 1432999 D 326297 CDS YP_927051.1 119774311 4603426 complement(1433642..1435009) 1 NC_008700.1 KEGG: pae:PA5522 probable glutamine synthetase; glutamate--ammonia ligase 1435009 4603426 Sama_1174 Shewanella amazonensis SB2B glutamate--ammonia ligase YP_927051.1 1433642 R 326297 CDS YP_927052.1 119774312 4603427 1435364..1437340 1 NC_008700.1 KEGG: sdn:Sden_1362 choline/carnitine/betaine transport; choline/carnitine/betaine transport 1437340 4603427 Sama_1175 Shewanella amazonensis SB2B choline/carnitine/betaine transport YP_927052.1 1435364 D 326297 CDS YP_927053.1 119774313 4603428 1437410..1437766 1 NC_008700.1 KEGG: son:SO1738 hypothetical protein; hypothetical protein 1437766 4603428 Sama_1176 Shewanella amazonensis SB2B hypothetical protein YP_927053.1 1437410 D 326297 CDS YP_927054.1 119774314 4603429 1437930..1439450 1 NC_008700.1 KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein; proton-dependent oligopeptide transporter (POT) family protein 1439450 4603429 Sama_1177 Shewanella amazonensis SB2B proton-dependent oligopeptide transporter (POT) family protein YP_927054.1 1437930 D 326297 CDS YP_927055.1 119774315 4603430 1439543..1440259 1 NC_008700.1 KEGG: sdn:Sden_0822 beta-lactamase; beta-lactamase 1440259 4603430 Sama_1178 Shewanella amazonensis SB2B beta-lactamase YP_927055.1 1439543 D 326297 CDS YP_927056.1 119774316 4603431 complement(1440275..1440505) 1 NC_008700.1 KEGG: son:SO1739 hypothetical protein; hypothetical protein 1440505 4603431 Sama_1179 Shewanella amazonensis SB2B hypothetical protein YP_927056.1 1440275 R 326297 CDS YP_927057.1 119774317 4603432 1440797..1443505 1 NC_008700.1 KEGG: sdn:Sden_0686 hypothetical protein; hypothetical protein 1443505 4603432 Sama_1180 Shewanella amazonensis SB2B hypothetical protein YP_927057.1 1440797 D 326297 CDS YP_927058.1 119774318 4603433 1443797..1445113 1 NC_008700.1 KEGG: son:SO1741 hypothetical protein; hypothetical protein 1445113 4603433 Sama_1181 Shewanella amazonensis SB2B hypothetical protein YP_927058.1 1443797 D 326297 CDS YP_927059.1 119774319 4603434 1445417..1446466 1 NC_008700.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1446466 4603434 Sama_1182 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_927059.1 1445417 D 326297 CDS YP_927060.1 119774320 4603435 1446466..1447398 1 NC_008700.1 KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta fold family hydrolase 1447398 4603435 Sama_1183 Shewanella amazonensis SB2B alpha/beta fold family hydrolase YP_927060.1 1446466 D 326297 CDS YP_927061.1 119774321 4603436 1447395..1449089 1 NC_008700.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1449089 4603436 Sama_1184 Shewanella amazonensis SB2B peptide synthase YP_927061.1 1447395 D 326297 CDS YP_927062.1 119774322 4603437 1449086..1450141 1 NC_008700.1 KEGG: ppr:PBPRA1465 steroid dehydrogenase; steroid dehydrogenase 1450141 4603437 Sama_1185 Shewanella amazonensis SB2B steroid dehydrogenase YP_927062.1 1449086 D 326297 CDS YP_927063.1 119774323 4603438 complement(1450270..1451466) 1 NC_008700.1 KEGG: son:SO4017 transglycosylase, Slt family; Slt family transglycosylase 1451466 4603438 Sama_1186 Shewanella amazonensis SB2B Slt family transglycosylase YP_927063.1 1450270 R 326297 CDS YP_927064.1 119774324 4603439 1451754..1452635 1 NC_008700.1 KEGG: son:SO1750 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1452635 4603439 Sama_1187 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_927064.1 1451754 D 326297 CDS YP_927065.1 119774325 4603440 1452647..1456207 1 NC_008700.1 KEGG: son:SO1751 hypothetical protein; hypothetical protein 1456207 4603440 Sama_1188 Shewanella amazonensis SB2B hypothetical protein YP_927065.1 1452647 D 326297 CDS YP_927066.1 119774326 4603441 1456456..1458213 1 NC_008700.1 KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase family protein 1458213 4603441 Sama_1189 Shewanella amazonensis SB2B phosphoglucomutase/phosphomannomutase family protein YP_927066.1 1456456 D 326297 CDS YP_927067.1 119774327 4603442 1458359..1458742 1 NC_008700.1 KEGG: son:SO1756 glyoxalase family protein; glyoxalase family protein 1458742 4603442 Sama_1190 Shewanella amazonensis SB2B glyoxalase family protein YP_927067.1 1458359 D 326297 CDS YP_927068.1 119774328 4603443 1458845..1459552 1 NC_008700.1 KEGG: son:SO1758 hypothetical protein; hypothetical protein 1459552 4603443 Sama_1191 Shewanella amazonensis SB2B hypothetical protein YP_927068.1 1458845 D 326297 CDS YP_927069.1 119774329 4603444 complement(1459602..1462448) 1 NC_008700.1 KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor 1462448 4603444 Sama_1192 Shewanella amazonensis SB2B TonB-dependent receptor YP_927069.1 1459602 R 326297 CDS YP_927070.1 119774330 4603445 1462777..1463559 1 NC_008700.1 KEGG: vfi:VFA1006 transcriptional regulator, GlpR family; GlpR family transcriptional regulator 1463559 4603445 Sama_1193 Shewanella amazonensis SB2B GlpR family transcriptional regulator YP_927070.1 1462777 D 326297 CDS YP_927071.1 119774331 4603446 1463578..1464945 1 NC_008700.1 KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; Gfo/Idh/MocA family oxidoreductase 1464945 4603446 Sama_1194 Shewanella amazonensis SB2B Gfo/Idh/MocA family oxidoreductase YP_927071.1 1463578 D 326297 CDS YP_927072.1 119774332 4603447 1464950..1466218 1 NC_008700.1 KEGG: shm:Shewmr7_2601 tagatose-6-phosphate kinase; tagatose-6-phosphate kinase 1466218 4603447 Sama_1195 Shewanella amazonensis SB2B tagatose-6-phosphate kinase YP_927072.1 1464950 D 326297 CDS YP_927073.1 119774333 4603448 1466224..1467417 1 NC_008700.1 KEGG: vvy:VVA1515 predicted phosphosugar isomerase; phosphosugar isomerase 1467417 4603448 Sama_1196 Shewanella amazonensis SB2B phosphosugar isomerase YP_927073.1 1466224 D 326297 CDS YP_927074.1 119774334 4603449 1467421..1468428 1 NC_008700.1 KEGG: spt:SPA1630 putative ROK-family protein; putative ROK-family protein 1468428 4603449 Sama_1197 Shewanella amazonensis SB2B putative ROK-family protein YP_927074.1 1467421 D 326297 CDS YP_927075.1 119774335 4603450 1468421..1469656 1 NC_008700.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1469656 4603450 Sama_1198 Shewanella amazonensis SB2B N-acetylglucosamine-6-phosphate deacetylase YP_927075.1 1468421 D 326297 CDS YP_927076.1 119774336 4603451 1469724..1471040 1 NC_008700.1 KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1471040 4603451 Sama_1199 Shewanella amazonensis SB2B multiple antibiotic resistance (MarC)-like protein YP_927076.1 1469724 D 326297 CDS YP_927077.1 119774337 4603452 complement(1471185..1472867) 1 NC_008700.1 KEGG: sdn:Sden_2434 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 1472867 4603452 Sama_1200 Shewanella amazonensis SB2B pyridoxal-dependent decarboxylase YP_927077.1 1471185 R 326297 CDS YP_927078.1 119774338 4603453 1473553..1475010 1 NC_008700.1 KEGG: sdn:Sden_3015 peptidase M4, thermolysin; peptidase M4, thermolysin 1475010 4603453 Sama_1201 Shewanella amazonensis SB2B peptidase M4, thermolysin YP_927078.1 1473553 D 326297 CDS YP_927079.1 119774339 4603454 complement(1475050..1476024) 1 NC_008700.1 KEGG: vfi:VF2362 GGDEF family protein; diguanylate cyclase 1476024 4603454 Sama_1202 Shewanella amazonensis SB2B diguanylate cyclase YP_927079.1 1475050 R 326297 CDS YP_927080.1 119774340 4603455 complement(1476060..1476653) 1 NC_008700.1 KEGG: dar:Daro_1297 hypothetical protein; hypothetical protein 1476653 4603455 Sama_1203 Shewanella amazonensis SB2B hypothetical protein YP_927080.1 1476060 R 326297 CDS YP_927081.1 119774341 4603456 complement(1476653..1477207) 1 NC_008700.1 hypothetical protein 1477207 4603456 Sama_1204 Shewanella amazonensis SB2B hypothetical protein YP_927081.1 1476653 R 326297 CDS YP_927082.1 119774342 4603457 complement(1477415..1478506) 1 NC_008700.1 KEGG: sdn:Sden_2616 peptidyl-Lys metalloendopeptidase; peptidyl-Lys metalloendopeptidase 1478506 4603457 Sama_1205 Shewanella amazonensis SB2B peptidyl-Lys metalloendopeptidase YP_927082.1 1477415 R 326297 CDS YP_927083.1 119774343 4603458 complement(1478828..1480909) 1 NC_008700.1 KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein MtrB 1480909 4603458 Sama_1206 Shewanella amazonensis SB2B outer membrane protein MtrB YP_927083.1 1478828 R 326297 CDS YP_927084.1 119774344 4603459 complement(1480922..1481902) 1 NC_008700.1 KEGG: son:SO1777 decaheme cytochrome c MtrA; decaheme cytochrome c MtrA 1481902 4603459 Sama_1207 Shewanella amazonensis SB2B decaheme cytochrome c MtrA YP_927084.1 1480922 R 326297 CDS YP_927085.1 119774345 4603460 complement(1481971..1483941) 1 NC_008700.1 KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 1483941 4603460 Sama_1208 Shewanella amazonensis SB2B decaheme cytochrome c YP_927085.1 1481971 R 326297 CDS YP_927086.1 119774346 4603461 complement(1484259..1486448) 1 NC_008700.1 KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 1486448 4603461 Sama_1209 Shewanella amazonensis SB2B decaheme cytochrome c YP_927086.1 1484259 R 326297 CDS YP_927087.1 119774347 4603462 complement(1486776..1488959) 1 NC_008700.1 KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 1488959 4603462 Sama_1210 Shewanella amazonensis SB2B decaheme cytochrome c YP_927087.1 1486776 R 326297 CDS YP_927088.1 119774348 4603463 complement(1489054..1490973) 1 NC_008700.1 KEGG: son:SO1780 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 1490973 4603463 Sama_1211 Shewanella amazonensis SB2B decaheme cytochrome c MtrF YP_927088.1 1489054 R 326297 CDS YP_927089.1 119774349 4603464 complement(1491000..1493096) 1 NC_008700.1 KEGG: son:SO1781 outer membrane protein, putative; outer membrane protein 1493096 4603464 Sama_1212 Shewanella amazonensis SB2B outer membrane protein YP_927089.1 1491000 R 326297 CDS YP_927090.1 119774350 4603465 complement(1493107..1494063) 1 NC_008700.1 KEGG: son:SO1782 decaheme cytochrome c MtrD; decaheme cytochrome c MtrD 1494063 4603465 Sama_1213 Shewanella amazonensis SB2B decaheme cytochrome c MtrD YP_927090.1 1493107 R 326297 CDS YP_927091.1 119774351 4603466 1494459..1494713 1 NC_008700.1 KEGG: son:SO1783 ferrous iron transport protein A; ferrous iron transport protein A 1494713 4603466 Sama_1214 Shewanella amazonensis SB2B ferrous iron transport protein A YP_927091.1 1494459 D 326297 CDS YP_927092.1 119774352 4603467 1494706..1497000 1 NC_008700.1 KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 1497000 4603467 Sama_1215 Shewanella amazonensis SB2B ferrous iron transport protein B YP_927092.1 1494706 D 326297 CDS YP_927093.1 119774353 4603468 1497161..1498828 1 NC_008700.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1498828 4603468 Sama_1216 Shewanella amazonensis SB2B glutaminyl-tRNA synthetase YP_927093.1 1497161 D 326297 CDS YP_927094.1 119774354 4603469 complement(1498901..1499497) 1 NC_008700.1 KEGG: son:SO1787 hypothetical protein; hypothetical protein 1499497 4603469 Sama_1217 Shewanella amazonensis SB2B hypothetical protein YP_927094.1 1498901 R 326297 CDS YP_927095.1 119774355 4603470 1499678..1500448 1 NC_008700.1 KEGG: son:SO1788 tRNA-hydroxylase; tRNA-hydroxylase 1500448 4603470 Sama_1218 Shewanella amazonensis SB2B tRNA-hydroxylase YP_927095.1 1499678 D 326297 CDS YP_927096.1 119774356 4603471 complement(1500472..1501188) 1 NC_008700.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1501188 4603471 Sama_1219 Shewanella amazonensis SB2B UDP-2,3-diacylglucosamine hydrolase YP_927096.1 1500472 R 326297 CDS YP_927097.1 119774357 4603472 complement(1501199..1501708) 1 NC_008700.1 KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase B 1501708 4603472 Sama_1220 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase B YP_927097.1 1501199 R 326297 CDS YP_927098.1 119774358 4603473 1501835..1503214 1 NC_008700.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1503214 cysS 4603473 cysS Shewanella amazonensis SB2B cysteinyl-tRNA synthetase YP_927098.1 1501835 D 326297 CDS YP_927099.1 119774359 4603474 complement(1503327..1504181) 1 NC_008700.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1504181 4603474 Sama_1222 Shewanella amazonensis SB2B bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_927099.1 1503327 R 326297 CDS YP_927100.1 119774360 4605949 1504977..1506281 1 NC_008700.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1506281 tig 4605949 tig Shewanella amazonensis SB2B trigger factor YP_927100.1 1504977 D 326297 CDS YP_927101.1 119774361 4603476 1506371..1506979 1 NC_008700.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1506979 clpP 4603476 clpP Shewanella amazonensis SB2B ATP-dependent Clp protease proteolytic subunit YP_927101.1 1506371 D 326297 CDS YP_927102.1 119774362 4603477 1507065..1508342 1 NC_008700.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1508342 clpX 4603477 clpX Shewanella amazonensis SB2B ATP-dependent protease ATP-binding subunit ClpX YP_927102.1 1507065 D 326297 CDS YP_927103.1 119774363 4603478 1508471..1510828 1 NC_008700.1 KEGG: son:SO1796 ATP-dependent protease La; endopeptidase La 1510828 4603478 Sama_1226 Shewanella amazonensis SB2B endopeptidase La YP_927103.1 1508471 D 326297 CDS YP_927104.1 119774364 4603479 1511088..1511360 1 NC_008700.1 KEGG: son:SO1797 DNA-binding protein, HU family; HU family DNA-binding protein 1511360 4603479 Sama_1227 Shewanella amazonensis SB2B HU family DNA-binding protein YP_927104.1 1511088 D 326297 CDS YP_927105.1 119774365 4603480 1511561..1513408 1 NC_008700.1 KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; peptidyl-prolyl cis-trans isomerase D 1513408 4603480 Sama_1228 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase D YP_927105.1 1511561 D 326297 CDS YP_927106.1 119774366 4603481 complement(1513527..1514183) 1 NC_008700.1 KEGG: yps:YPTB2904 putative uracil-DNA glycosylase; putative uracil-DNA glycosylase 1514183 4603481 Sama_1229 Shewanella amazonensis SB2B putative uracil-DNA glycosylase YP_927106.1 1513527 R 326297 CDS YP_927107.1 119774367 4603482 complement(1514278..1515480) 1 NC_008700.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 1515480 4603482 Sama_1230 Shewanella amazonensis SB2B trans-2-enoyl-CoA reductase YP_927107.1 1514278 R 326297 CDS YP_927108.1 119774368 4603483 complement(1515577..1516362) 1 NC_008700.1 KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; peptide ABC transporter ATP-binding protein 1516362 4603483 Sama_1231 Shewanella amazonensis SB2B peptide ABC transporter ATP-binding protein YP_927108.1 1515577 R 326297 CDS YP_927109.1 119774369 4603484 complement(1516343..1517350) 1 NC_008700.1 KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; peptide ABC transporter ATP-binding protein 1517350 4603484 Sama_1232 Shewanella amazonensis SB2B peptide ABC transporter ATP-binding protein YP_927109.1 1516343 R 326297 CDS YP_927110.1 119774370 4603485 complement(1517353..1518243) 1 NC_008700.1 KEGG: son:SO1803 peptide ABC transporter, permease protein; peptide ABC transporter permease 1518243 4603485 Sama_1233 Shewanella amazonensis SB2B peptide ABC transporter permease YP_927110.1 1517353 R 326297 CDS YP_927111.1 119774371 4603486 complement(1518230..1519261) 1 NC_008700.1 KEGG: son:SO1804 peptide ABC transporter, permease protein; peptide ABC transporter permease 1519261 4603486 Sama_1234 Shewanella amazonensis SB2B peptide ABC transporter permease YP_927111.1 1518230 R 326297 CDS YP_927112.1 119774372 4603487 complement(1519261..1520889) 1 NC_008700.1 KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; peptide ABC transporter substrate-binding protein 1520889 4603487 Sama_1235 Shewanella amazonensis SB2B peptide ABC transporter substrate-binding protein YP_927112.1 1519261 R 326297 CDS YP_927113.1 119774373 4603488 complement(1520960..1522033) 1 NC_008700.1 KEGG: son:SO1806 psp operon transcriptional activator; psp operon transcriptional activator 1522033 4603488 Sama_1236 Shewanella amazonensis SB2B psp operon transcriptional activator YP_927113.1 1520960 R 326297 CDS YP_927114.1 119774374 4603489 1522209..1522892 1 NC_008700.1 KEGG: son:SO1807 phage shock protein A; phage shock protein A 1522892 4603489 Sama_1237 Shewanella amazonensis SB2B phage shock protein A YP_927114.1 1522209 D 326297 CDS YP_927115.1 119774375 4603490 1522917..1523156 1 NC_008700.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1523156 pspB 4603490 pspB Shewanella amazonensis SB2B phage shock protein B YP_927115.1 1522917 D 326297 CDS YP_927116.1 119774376 4603491 1523143..1523538 1 NC_008700.1 KEGG: son:SO1809 phage shock protein C; phage shock protein C 1523538 4603491 Sama_1239 Shewanella amazonensis SB2B phage shock protein C YP_927116.1 1523143 D 326297 CDS YP_927117.1 119774377 4603492 1523627..1525048 1 NC_008700.1 KEGG: son:SO1810 hypothetical ATPase; ATPase 1525048 4603492 Sama_1240 Shewanella amazonensis SB2B ATPase YP_927117.1 1523627 D 326297 CDS YP_927118.1 119774378 4603493 1525073..1526161 1 NC_008700.1 KEGG: son:SO1811 hypothetical protein; hypothetical protein 1526161 4603493 Sama_1241 Shewanella amazonensis SB2B hypothetical protein YP_927118.1 1525073 D 326297 CDS YP_927119.1 119774379 4603494 1526273..1527451 1 NC_008700.1 KEGG: son:SO1812 methionine gamma-lyase; methionine gamma-lyase 1527451 4603494 Sama_1242 Shewanella amazonensis SB2B methionine gamma-lyase YP_927119.1 1526273 D 326297 CDS YP_927120.1 119774380 4603495 1527548..1527859 1 NC_008700.1 KEGG: aci:ACIAD3064 putative DNA uptake protein and/or related DNA-binding protein; DNA uptake protein 1527859 4603495 Sama_1243 Shewanella amazonensis SB2B DNA uptake protein YP_927120.1 1527548 D 326297 CDS YP_927121.1 119774381 4605950 complement(1528118..1528402) 1 NC_008700.1 KEGG: son:SO1814 hypothetical protein; hypothetical protein 1528402 4605950 Sama_1244 Shewanella amazonensis SB2B hypothetical protein YP_927121.1 1528118 R 326297 CDS YP_927122.1 119774382 4603497 complement(1528416..1529333) 1 NC_008700.1 KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase/AcuC/AphA family protein 1529333 4603497 Sama_1245 Shewanella amazonensis SB2B histone deacetylase/AcuC/AphA family protein YP_927122.1 1528416 R 326297 CDS YP_927123.1 119774383 4603498 complement(1529335..1530039) 1 NC_008700.1 KEGG: son:SO1816 hypothetical protein; hypothetical protein 1530039 4603498 Sama_1246 Shewanella amazonensis SB2B hypothetical protein YP_927123.1 1529335 R 326297 CDS YP_927124.1 119774384 4603499 complement(1530049..1530711) 1 NC_008700.1 KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 1530711 4603499 Sama_1247 Shewanella amazonensis SB2B primosomal replication protein N'' YP_927124.1 1530049 R 326297 CDS YP_927125.1 119774385 4603500 complement(1530708..1531481) 1 NC_008700.1 KEGG: sdn:Sden_2430 protein of unknown function DUF81; hypothetical protein 1531481 4603500 Sama_1248 Shewanella amazonensis SB2B hypothetical protein YP_927125.1 1530708 R 326297 CDS YP_927126.1 119774386 4603501 complement(1531491..1533566) 1 NC_008700.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1533566 dinG 4603501 dinG Shewanella amazonensis SB2B ATP-dependent DNA helicase DinG YP_927126.1 1531491 R 326297 CDS YP_927127.1 119774387 4603502 1533668..1536073 1 NC_008700.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1536073 4603502 Sama_1250 Shewanella amazonensis SB2B DNA polymerase II YP_927127.1 1533668 D 326297 CDS YP_927128.1 119774388 4603503 1536292..1537500 1 NC_008700.1 KEGG: son:SO1821 outer membrane porin, putative; outer membrane porin 1537500 4603503 Sama_1251 Shewanella amazonensis SB2B outer membrane porin YP_927128.1 1536292 D 326297 CDS YP_927129.1 119774389 4603504 1537855..1540578 1 NC_008700.1 KEGG: cps:CPS_3757 TonB-dependent receptor; TonB-dependent receptor 1540578 4603504 Sama_1252 Shewanella amazonensis SB2B TonB-dependent receptor YP_927129.1 1537855 D 326297 CDS YP_927130.1 119774390 4603505 1540648..1542429 1 NC_008700.1 KEGG: ccr:CC2818 TPR domain protein; hypothetical protein 1542429 4603505 Sama_1253 Shewanella amazonensis SB2B hypothetical protein YP_927130.1 1540648 D 326297 CDS YP_927131.1 119774391 4603506 1542695..1543477 1 NC_008700.1 KEGG: sdn:Sden_2425 hypothetical protein; hypothetical protein 1543477 4603506 Sama_1254 Shewanella amazonensis SB2B hypothetical protein YP_927131.1 1542695 D 326297 CDS YP_927132.1 119774392 4603507 1543477..1544832 1 NC_008700.1 KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel family protein 1544832 4603507 Sama_1255 Shewanella amazonensis SB2B MotA/TolQ/ExbB proton channel family protein YP_927132.1 1543477 D 326297 CDS YP_927133.1 119774393 4603508 1544832..1545359 1 NC_008700.1 KEGG: sdn:Sden_2423 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1545359 4603508 Sama_1256 Shewanella amazonensis SB2B MotA/TolQ/ExbB proton channel YP_927133.1 1544832 D 326297 CDS YP_927134.1 119774394 4603509 1545373..1545777 1 NC_008700.1 KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1545777 4603509 Sama_1257 Shewanella amazonensis SB2B biopolymer transport protein ExbD/TolR YP_927134.1 1545373 D 326297 CDS YP_927135.1 119774395 4603510 1545780..1546400 1 NC_008700.1 KEGG: sdn:Sden_2421 TonB-like protein; TonB-like protein 1546400 4603510 Sama_1258 Shewanella amazonensis SB2B TonB-like protein YP_927135.1 1545780 D 326297 CDS YP_927136.1 119774396 4603511 1546403..1547653 1 NC_008700.1 KEGG: son:SO1829 TPR domain protein; hypothetical protein 1547653 4603511 Sama_1259 Shewanella amazonensis SB2B hypothetical protein YP_927136.1 1546403 D 326297 CDS YP_927137.1 119774397 4603512 complement(1547696..1548205) 1 NC_008700.1 KEGG: son:SO1830 GGDEF domain protein protein; response regulator receiver protein 1548205 4603512 Sama_1260 Shewanella amazonensis SB2B response regulator receiver protein YP_927137.1 1547696 R 326297 CDS YP_927138.1 119774398 4603513 1548284..1550113 1 NC_008700.1 KEGG: son:SO1831 hypothetical protein; hypothetical protein 1550113 4603513 Sama_1261 Shewanella amazonensis SB2B hypothetical protein YP_927138.1 1548284 D 326297 CDS YP_927139.1 119774399 4603514 1550238..1550516 1 NC_008700.1 KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; peptidyl-prolyl cis-trans isomerase C 1550516 4603514 Sama_1262 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase C YP_927139.1 1550238 D 326297 CDS YP_927140.1 119774400 4603515 1550643..1551185 1 NC_008700.1 KEGG: son:SO1834 acetyltransferase, GNAT family; acetyltransferase 1551185 4603515 Sama_1263 Shewanella amazonensis SB2B acetyltransferase YP_927140.1 1550643 D 326297 CDS YP_927141.1 119774401 4603516 1551255..1551485 1 NC_008700.1 KEGG: sdn:Sden_2510 RNA-binding S4; RNA-binding protein S4 1551485 4603516 Sama_1264 Shewanella amazonensis SB2B RNA-binding protein S4 YP_927141.1 1551255 D 326297 CDS YP_927142.1 119774402 4603517 1551497..1551898 1 NC_008700.1 KEGG: sdn:Sden_2509 protein of unknown function DUF1260; hypothetical protein 1551898 4603517 Sama_1265 Shewanella amazonensis SB2B hypothetical protein YP_927142.1 1551497 D 326297 CDS YP_927143.1 119774403 4603518 1552140..1552922 1 NC_008700.1 KEGG: son:SO2846 hypothetical protein; hypothetical protein 1552922 4603518 Sama_1266 Shewanella amazonensis SB2B hypothetical protein YP_927143.1 1552140 D 326297 CDS YP_927144.1 119774404 4603519 1553022..1554167 1 NC_008700.1 KEGG: son:SO2844 exonuclease SbcD, putative; exonuclease SbcD 1554167 4603519 Sama_1267 Shewanella amazonensis SB2B exonuclease SbcD YP_927144.1 1553022 D 326297 CDS YP_927145.1 119774405 4603520 1554164..1557226 1 NC_008700.1 KEGG: son:SO2843 exonuclease SbcC, putative; exonuclease SbcC 1557226 4603520 Sama_1268 Shewanella amazonensis SB2B exonuclease SbcC YP_927145.1 1554164 D 326297 CDS YP_927146.1 119774406 4603521 1557503..1558762 1 NC_008700.1 KEGG: son:SO2842 peptidase, M23/M37 family; M24/M37 family peptidase 1558762 4603521 Sama_1269 Shewanella amazonensis SB2B M24/M37 family peptidase YP_927146.1 1557503 D 326297 CDS YP_927147.1 119774407 4603522 complement(1558878..1559306) 1 NC_008700.1 KEGG: son:SO2841 hypothetical protein; hypothetical protein 1559306 4603522 Sama_1270 Shewanella amazonensis SB2B hypothetical protein YP_927147.1 1558878 R 326297 CDS YP_927148.1 119774408 4603523 complement(1559653..1560150) 1 NC_008700.1 KEGG: son:SO2840 hypothetical protein; hypothetical protein 1560150 4603523 Sama_1271 Shewanella amazonensis SB2B hypothetical protein YP_927148.1 1559653 R 326297 CDS YP_927149.1 119774409 4603524 complement(1560147..1560584) 1 NC_008700.1 KEGG: son:SO2839 hypothetical protein; hypothetical protein 1560584 4603524 Sama_1272 Shewanella amazonensis SB2B hypothetical protein YP_927149.1 1560147 R 326297 CDS YP_927150.1 119774410 4603525 complement(1560665..1562035) 1 NC_008700.1 KEGG: sdn:Sden_1417 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase 1562035 4603525 Sama_1273 Shewanella amazonensis SB2B DEAD/DEAH box helicase YP_927150.1 1560665 R 326297 CDS YP_927151.1 119774411 4603526 1562539..1563474 1 NC_008700.1 KEGG: son:SO2836 hypothetical protein; hypothetical protein 1563474 4603526 Sama_1274 Shewanella amazonensis SB2B hypothetical protein YP_927151.1 1562539 D 326297 CDS YP_927152.1 119774412 4603527 1563748..1565865 1 NC_008700.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1565865 4603527 Sama_1275 Shewanella amazonensis SB2B anaerobic ribonucleoside triphosphate reductase YP_927152.1 1563748 D 326297 CDS YP_927153.1 119774413 4603528 1565906..1566403 1 NC_008700.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1566403 nrdG 4603528 nrdG Shewanella amazonensis SB2B anaerobic ribonucleotide reductase-activating protein YP_927153.1 1565906 D 326297 CDS YP_927154.1 119774414 4603529 1566656..1567273 1 NC_008700.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1567273 ribA 4603529 ribA Shewanella amazonensis SB2B GTP cyclohydrolase II YP_927154.1 1566656 D 326297 CDS YP_927155.1 119774415 4603530 1567327..1568151 1 NC_008700.1 KEGG: sdn:Sden_1448 hypothetical protein; hypothetical protein 1568151 4603530 Sama_1278 Shewanella amazonensis SB2B hypothetical protein YP_927155.1 1567327 D 326297 CDS YP_927156.1 119774416 4603531 complement(1568223..1568858) 1 NC_008700.1 KEGG: rba:RB9658 hypothetical protein; hypothetical protein 1568858 4603531 Sama_1279 Shewanella amazonensis SB2B hypothetical protein YP_927156.1 1568223 R 326297 CDS YP_927157.1 119774417 4603532 complement(1568982..1570415) 1 NC_008700.1 KEGG: vvy:VV0693 carbon starvation protein; carbon starvation protein 1570415 4603532 Sama_1280 Shewanella amazonensis SB2B carbon starvation protein YP_927157.1 1568982 R 326297 CDS YP_927158.1 119774418 4603533 complement(1570536..1571246) 1 NC_008700.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 1571246 4603533 Sama_1281 Shewanella amazonensis SB2B putative two-component response-regulatory protein YehT YP_927158.1 1570536 R 326297 CDS YP_927159.1 119774419 4603534 complement(1571243..1572952) 1 NC_008700.1 KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 1572952 4603534 Sama_1282 Shewanella amazonensis SB2B signal transduction histidine kinase LytS YP_927159.1 1571243 R 326297 CDS YP_927160.1 119774420 4603535 1573081..1573323 1 NC_008700.1 KEGG: ecp:ECP_1849 hypothetical protein YecH; hypothetical protein 1573323 4603535 Sama_1283 Shewanella amazonensis SB2B hypothetical protein YP_927160.1 1573081 D 326297 CDS YP_927161.1 119774421 4603536 complement(1573320..1573667) 1 NC_008700.1 KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 1573667 4603536 Sama_1284 Shewanella amazonensis SB2B RepA domain-containing protein YP_927161.1 1573320 R 326297 CDS YP_927162.1 119774422 4603537 complement(1573654..1574322) 1 NC_008700.1 KEGG: son:SO2808 hypothetical protein; hypothetical protein 1574322 4603537 Sama_1285 Shewanella amazonensis SB2B hypothetical protein YP_927162.1 1573654 R 326297 CDS YP_927163.1 119774423 4603538 complement(1574398..1574700) 1 NC_008700.1 KEGG: son:SO2807 hypothetical protein; hypothetical protein 1574700 4603538 Sama_1286 Shewanella amazonensis SB2B hypothetical protein YP_927163.1 1574398 R 326297 CDS YP_927164.1 119774424 4603539 complement(1574833..1575237) 1 NC_008700.1 KEGG: son:SO2806 hypothetical protein; hypothetical protein 1575237 4603539 Sama_1287 Shewanella amazonensis SB2B hypothetical protein YP_927164.1 1574833 R 326297 CDS YP_927165.1 119774425 4603540 complement(1575337..1576506) 1 NC_008700.1 KEGG: son:SO2805 putative uncharacterized protein involved in response to NO; hypothetical protein 1576506 4603540 Sama_1288 Shewanella amazonensis SB2B hypothetical protein YP_927165.1 1575337 R 326297 CDS YP_927166.1 119774426 4603541 complement(1576636..1577439) 1 NC_008700.1 KEGG: son:SO2260 extragenic suppressor protein SuhB; extragenic suppressor protein SuhB 1577439 4603541 Sama_1289 Shewanella amazonensis SB2B extragenic suppressor protein SuhB YP_927166.1 1576636 R 326297 CDS YP_927167.1 119774427 4603542 1577595..1578317 1 NC_008700.1 KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1578317 4603542 Sama_1290 Shewanella amazonensis SB2B RNA methyltransferase YP_927167.1 1577595 D 326297 CDS YP_927168.1 119774428 4603543 1578350..1579171 1 NC_008700.1 KEGG: son:SO2262 serine acetyltransferase; Serine O-acetyltransferase 1579171 4603543 Sama_1291 Shewanella amazonensis SB2B Serine O-acetyltransferase YP_927168.1 1578350 D 326297 CDS YP_927169.1 119774429 4603544 1579364..1579825 1 NC_008700.1 KEGG: son:SO2263 Rrf2 family protein; Rrf2 family protein 1579825 4603544 Sama_1292 Shewanella amazonensis SB2B Rrf2 family protein YP_927169.1 1579364 D 326297 CDS YP_927170.1 119774430 4603545 1579903..1581117 1 NC_008700.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1581117 4603545 Sama_1293 Shewanella amazonensis SB2B cysteine desulfurase YP_927170.1 1579903 D 326297 CDS YP_927171.1 119774431 4603546 1581148..1581531 1 NC_008700.1 KEGG: son:SO2265 NifU family protein; scaffold protein 1581531 4603546 Sama_1294 Shewanella amazonensis SB2B scaffold protein YP_927171.1 1581148 D 326297 CDS YP_927172.1 119774432 4603547 1581544..1581867 1 NC_008700.1 KEGG: son:SO2266 HesB/YadR/YfhF family protein; HesB/YadR/YfhF family protein 1581867 4603547 Sama_1295 Shewanella amazonensis SB2B HesB/YadR/YfhF family protein YP_927172.1 1581544 D 326297 CDS YP_927173.1 119774433 4603548 1581877..1582401 1 NC_008700.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1582401 hscB 4603548 hscB Shewanella amazonensis SB2B co-chaperone HscB YP_927173.1 1581877 D 326297 CDS YP_927174.1 119774434 4603549 1582456..1584315 1 NC_008700.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1584315 hscA 4603549 hscA Shewanella amazonensis SB2B chaperone protein HscA YP_927174.1 1582456 D 326297 CDS YP_927175.1 119774435 4603550 1584324..1584659 1 NC_008700.1 KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 1584659 4603550 Sama_1298 Shewanella amazonensis SB2B ferredoxin, 2Fe-2S YP_927175.1 1584324 D 326297 CDS YP_927176.1 119774436 4603551 1584817..1585722 1 NC_008700.1 KEGG: son:SO2270 ribosomal protein S6 modification protein; ribosomal protein S6 modification protein 1585722 4603551 Sama_1299 Shewanella amazonensis SB2B ribosomal protein S6 modification protein YP_927176.1 1584817 D 326297 CDS YP_927177.1 119774437 4603552 1585877..1586038 1 NC_008700.1 KEGG: sfr:Sfri_2114 hypothetical protein; hypothetical protein 1586038 4603552 Sama_1300 Shewanella amazonensis SB2B hypothetical protein YP_927177.1 1585877 D 326297 CDS YP_927178.1 119774438 4603553 1586191..1586622 1 NC_008700.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1586622 ndk 4603553 ndk Shewanella amazonensis SB2B nucleoside diphosphate kinase YP_927178.1 1586191 D 326297 CDS YP_927179.1 119774439 4603554 complement(1586764..1587117) 1 NC_008700.1 KEGG: son:SO2005 DksA-type zinc finger protein; TraR/DksA family transcriptional regulator 1587117 4603554 Sama_1302 Shewanella amazonensis SB2B TraR/DksA family transcriptional regulator YP_927179.1 1586764 R 326297 CDS YP_927180.1 119774440 4603555 complement(1587305..1588273) 1 NC_008700.1 KEGG: son:SO2006 NifR3/Smm1 family protein; NifR3/Smm1 family protein 1588273 4603555 Sama_1303 Shewanella amazonensis SB2B NifR3/Smm1 family protein YP_927180.1 1587305 R 326297 CDS YP_927181.1 119774441 4603556 1588539..1588982 1 NC_008700.1 KEGG: son:SO2007 hypothetical protein; hypothetical protein 1588982 4603556 Sama_1304 Shewanella amazonensis SB2B hypothetical protein YP_927181.1 1588539 D 326297 CDS YP_927182.1 119774442 4603557 1589045..1589881 1 NC_008700.1 KEGG: sdn:Sden_2386 protein of unknown function DUF692; hypothetical protein 1589881 4603557 Sama_1305 Shewanella amazonensis SB2B hypothetical protein YP_927182.1 1589045 D 326297 CDS YP_927183.1 119774443 4603558 1589878..1590636 1 NC_008700.1 KEGG: sdn:Sden_2385 hypothetical protein; hypothetical protein 1590636 4603558 Sama_1306 Shewanella amazonensis SB2B hypothetical protein YP_927183.1 1589878 D 326297 CDS YP_927184.1 119774444 4603559 1590741..1590860 1 NC_008700.1 KEGG: sdn:Sden_2384 hypothetical protein; hypothetical protein 1590860 4603559 Sama_1307 Shewanella amazonensis SB2B hypothetical protein YP_927184.1 1590741 D 326297 CDS YP_927185.1 119774445 4603560 1590950..1591321 1 NC_008700.1 KEGG: son:SO2011 hypothetical protein; hypothetical protein 1591321 4603560 Sama_1308 Shewanella amazonensis SB2B hypothetical protein YP_927185.1 1590950 D 326297 CDS YP_927186.1 119774446 4603561 1591486..1592031 1 NC_008700.1 KEGG: sdn:Sden_2382 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 1592031 4603561 Sama_1309 Shewanella amazonensis SB2B adenine phosphoribosyltransferase YP_927186.1 1591486 D 326297 CDS YP_927187.1 119774447 4603562 1592157..1594886 1 NC_008700.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; DNA-directed DNA polymerase 1594886 4603562 Sama_1310 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_927187.1 1592157 D 326297 CDS YP_927188.1 119774448 4603563 1595027..1595356 1 NC_008700.1 KEGG: sdn:Sden_2380 conserved hypothetical protein 103; hypothetical protein 1595356 4603563 Sama_1311 Shewanella amazonensis SB2B hypothetical protein YP_927188.1 1595027 D 326297 CDS YP_927189.1 119774449 4603564 1595370..1595969 1 NC_008700.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1595969 recR 4603564 recR Shewanella amazonensis SB2B recombination protein RecR YP_927189.1 1595370 D 326297 CDS YP_927190.1 119774450 4603565 1596151..1598064 1 NC_008700.1 molecular chaperone; heat shock protein 90 1598064 4603565 Sama_1313 Shewanella amazonensis SB2B heat shock protein 90 YP_927190.1 1596151 D 326297 CDS YP_927191.1 119774451 4603566 1598135..1599010 1 NC_008700.1 KEGG: son:SO2017 putative thioredoxin-like protein; putative thioredoxin-like protein 1599010 4603566 Sama_1314 Shewanella amazonensis SB2B putative thioredoxin-like protein YP_927191.1 1598135 D 326297 CDS YP_927192.1 119774452 4603567 1599152..1599796 1 NC_008700.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1599796 adk 4603567 adk Shewanella amazonensis SB2B adenylate kinase YP_927192.1 1599152 D 326297 CDS YP_927193.1 119774453 4603568 1599916..1600899 1 NC_008700.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1600899 hemH 4603568 hemH Shewanella amazonensis SB2B ferrochelatase YP_927193.1 1599916 D 326297 CDS YP_927194.1 119774454 4603569 1601151..1602455 1 NC_008700.1 KEGG: sdn:Sden_1431 inosine kinase; inosine kinase 1602455 4603569 Sama_1317 Shewanella amazonensis SB2B inosine kinase YP_927194.1 1601151 D 326297 CDS YP_927195.1 119774455 4603570 1602663..1603109 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1603109 4603570 Sama_1318 Shewanella amazonensis SB2B IS1004 transposase YP_927195.1 1602663 D 326297 CDS YP_927196.1 119774456 4603571 complement(1603255..1604568) 1 NC_008700.1 KEGG: sdn:Sden_2331 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1604568 4603571 Sama_1319 Shewanella amazonensis SB2B sodium:dicarboxylate symporter YP_927196.1 1603255 R 326297 CDS YP_927197.1 119774457 4603572 1604790..1607255 1 NC_008700.1 KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 1607255 4603572 Sama_1320 Shewanella amazonensis SB2B Ig domain-containing protein YP_927197.1 1604790 D 326297 CDS YP_927198.1 119774458 4603573 complement(1607496..1608830) 1 NC_008700.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1608830 4603573 Sama_1321 Shewanella amazonensis SB2B succinylarginine dihydrolase YP_927198.1 1607496 R 326297 CDS YP_927199.1 119774459 4603574 1609167..1611785 1 NC_008700.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1611785 4603574 Sama_1322 Shewanella amazonensis SB2B DNA topoisomerase I YP_927199.1 1609167 D 326297 CDS YP_927200.1 119774460 4603575 complement(1611884..1612657) 1 NC_008700.1 KEGG: son:SO2650 hypothetical protein; hypothetical protein 1612657 4603575 Sama_1323 Shewanella amazonensis SB2B hypothetical protein YP_927200.1 1611884 R 326297 CDS YP_927201.1 119774461 4603576 1612876..1613850 1 NC_008700.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1613850 cysB 4603576 cysB Shewanella amazonensis SB2B transcriptional regulator CysB YP_927201.1 1612876 D 326297 CDS YP_927202.1 119774462 4603577 complement(1613908..1615284) 1 NC_008700.1 KEGG: son:SO2248 L-serine dehydratase 1; L-serine ammonia-lyase 1615284 4603577 Sama_1325 Shewanella amazonensis SB2B L-serine ammonia-lyase YP_927202.1 1613908 R 326297 CDS YP_927203.1 119774463 4603578 1615624..1616649 1 NC_008700.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1616649 4603578 Sama_1326 Shewanella amazonensis SB2B beta-hexosaminidase YP_927203.1 1615624 D 326297 CDS YP_927204.1 119774464 4603579 1616758..1617300 1 NC_008700.1 KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein 1617300 4603579 Sama_1327 Shewanella amazonensis SB2B hypothetical protein YP_927204.1 1616758 D 326297 CDS YP_927205.1 119774465 4603580 1617762..1618037 1 NC_008700.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1618037 4603580 Sama_1328 Shewanella amazonensis SB2B acylphosphatase YP_927205.1 1617762 D 326297 CDS YP_927206.1 119774466 4603581 complement(1618028..1619212) 1 NC_008700.1 KEGG: sdn:Sden_1673 hypothetical protein; hypothetical protein 1619212 4603581 Sama_1329 Shewanella amazonensis SB2B hypothetical protein YP_927206.1 1618028 R 326297 CDS YP_927207.1 119774467 4603582 complement(1619212..1622679) 1 NC_008700.1 KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor 1622679 4603582 Sama_1330 Shewanella amazonensis SB2B transcription-repair coupling factor YP_927207.1 1619212 R 326297 CDS YP_927208.1 119774468 4603583 complement(1622748..1623329) 1 NC_008700.1 KEGG: son:SO2256 hypothetical protein; hypothetical protein 1623329 4603583 Sama_1331 Shewanella amazonensis SB2B hypothetical protein YP_927208.1 1622748 R 326297 CDS YP_927209.1 119774469 4603584 1623415..1624650 1 NC_008700.1 KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; lipoprotein releasing system transmembrane protein LolE 1624650 4603584 Sama_1332 Shewanella amazonensis SB2B lipoprotein releasing system transmembrane protein LolE YP_927209.1 1623415 D 326297 CDS YP_927210.1 119774470 4603585 1624715..1625404 1 NC_008700.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; lipoprotein releasing system ATP-binding protein LolD 1625404 4603585 Sama_1333 Shewanella amazonensis SB2B lipoprotein releasing system ATP-binding protein LolD YP_927210.1 1624715 D 326297 CDS YP_927211.1 119774471 4603586 1625401..1626663 1 NC_008700.1 KEGG: sdn:Sden_1678 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1626663 4603586 Sama_1334 Shewanella amazonensis SB2B LolC/E family lipoprotein releasing system, transmembrane protein YP_927211.1 1625401 D 326297 CDS YP_927212.1 119774472 4603587 complement(1626861..1627370) 1 NC_008700.1 KEGG: son:SO2804 hypothetical protein; hypothetical protein 1627370 4603587 Sama_1335 Shewanella amazonensis SB2B hypothetical protein YP_927212.1 1626861 R 326297 CDS YP_927213.1 119774473 4603588 1627401..1629698 1 NC_008700.1 KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1629698 4603588 Sama_1336 Shewanella amazonensis SB2B DNA internalization-related competence protein ComEC/Rec2 YP_927213.1 1627401 D 326297 CDS YP_927214.1 119774474 4603589 1629732..1631531 1 NC_008700.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; ABC transporter ATP-binding protein 1631531 4603589 Sama_1337 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_927214.1 1629732 D 326297 CDS YP_927215.1 119774475 4603590 1631534..1632583 1 NC_008700.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1632583 lpxK 4603590 lpxK Shewanella amazonensis SB2B tetraacyldisaccharide 4'-kinase YP_927215.1 1631534 D 326297 CDS YP_927216.1 119774476 4603591 1632573..1632758 1 NC_008700.1 KEGG: son:SO2800 hypothetical protein; hypothetical protein 1632758 4603591 Sama_1339 Shewanella amazonensis SB2B hypothetical protein YP_927216.1 1632573 D 326297 CDS YP_927217.1 119774477 4603592 1633021..1633770 1 NC_008700.1 KEGG: sdn:Sden_2196 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 1633770 4603592 Sama_1340 Shewanella amazonensis SB2B Mn2+-dependent serine/threonine protein kinase YP_927217.1 1633021 D 326297 CDS YP_927218.1 119774478 4603593 complement(1633771..1634241) 1 NC_008700.1 KEGG: pat:Patl_2623 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1634241 4603593 Sama_1341 Shewanella amazonensis SB2B alkylhydroperoxidase YP_927218.1 1633771 R 326297 CDS YP_927219.1 119774479 4603594 complement(1634681..1635196) 1 NC_008700.1 KEGG: ilo:IL0786 phosphinothricin N-acetyltransferase, putative; phosphinothricin N-acetyltransferase 1635196 4603594 Sama_1342 Shewanella amazonensis SB2B phosphinothricin N-acetyltransferase YP_927219.1 1634681 R 326297 CDS YP_927220.1 119774480 4603595 complement(1635729..1636145) 1 NC_008700.1 hypothetical protein 1636145 4603595 Sama_1343 Shewanella amazonensis SB2B hypothetical protein YP_927220.1 1635729 R 326297 CDS YP_927221.1 119774481 4603596 complement(1636239..1636631) 1 NC_008700.1 hypothetical protein 1636631 4603596 Sama_1344 Shewanella amazonensis SB2B hypothetical protein YP_927221.1 1636239 R 326297 CDS YP_927222.1 119774482 4603597 complement(1636724..1637206) 1 NC_008700.1 hypothetical protein 1637206 4603597 Sama_1345 Shewanella amazonensis SB2B hypothetical protein YP_927222.1 1636724 R 326297 CDS YP_927223.1 119774483 4603598 complement(1637278..1637688) 1 NC_008700.1 hypothetical protein 1637688 4603598 Sama_1346 Shewanella amazonensis SB2B hypothetical protein YP_927223.1 1637278 R 326297 CDS YP_927224.1 119774484 4603599 complement(1637911..1638360) 1 NC_008700.1 hypothetical protein 1638360 4603599 Sama_1347 Shewanella amazonensis SB2B hypothetical protein YP_927224.1 1637911 R 326297 CDS YP_927225.1 119774485 4603600 complement(1638456..1638986) 1 NC_008700.1 KEGG: lpp:lpp2955 hypothetical protein; hypothetical protein 1638986 4603600 Sama_1348 Shewanella amazonensis SB2B hypothetical protein YP_927225.1 1638456 R 326297 CDS YP_927226.1 119774486 4603601 complement(1639088..1639849) 1 NC_008700.1 KEGG: vch:VCA0356 hypothetical protein; hypothetical protein 1639849 4603601 Sama_1349 Shewanella amazonensis SB2B hypothetical protein YP_927226.1 1639088 R 326297 CDS YP_927227.1 119774487 4603602 complement(1639873..1640202) 1 NC_008700.1 hypothetical protein 1640202 4603602 Sama_1350 Shewanella amazonensis SB2B hypothetical protein YP_927227.1 1639873 R 326297 CDS YP_927228.1 119774488 4603603 complement(1640228..1641382) 1 NC_008700.1 KEGG: pab:PAB0087 related beta-lactamase precursor; beta-lactamase class C-like protein 1641382 4603603 Sama_1351 Shewanella amazonensis SB2B beta-lactamase class C-like protein YP_927228.1 1640228 R 326297 CDS YP_927229.1 119774489 4603604 complement(1641515..1641769) 1 NC_008700.1 hypothetical protein 1641769 4603604 Sama_1352 Shewanella amazonensis SB2B hypothetical protein YP_927229.1 1641515 R 326297 CDS YP_927230.1 119774490 4603605 complement(1641841..1642863) 1 NC_008700.1 KEGG: sit:TM1040_2021 hypothetical protein; hypothetical protein 1642863 4603605 Sama_1353 Shewanella amazonensis SB2B hypothetical protein YP_927230.1 1641841 R 326297 CDS YP_927231.1 119774491 4603606 complement(1642945..1643427) 1 NC_008700.1 hypothetical protein 1643427 4603606 Sama_1354 Shewanella amazonensis SB2B hypothetical protein YP_927231.1 1642945 R 326297 CDS YP_927232.1 119774492 4603607 1643758..1644714 1 NC_008700.1 KEGG: son:SO2037 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase 1644714 4603607 Sama_1355 Shewanella amazonensis SB2B phage integrase family site specific recombinase YP_927232.1 1643758 D 326297 CDS YP_927233.1 119774493 4603608 complement(1645192..1645848) 1 NC_008700.1 KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; 3-oxoacid CoA-transferase 1645848 4603608 Sama_1356 Shewanella amazonensis SB2B 3-oxoacid CoA-transferase YP_927233.1 1645192 R 326297 CDS YP_927234.1 119774494 4603609 complement(1645859..1646560) 1 NC_008700.1 KEGG: son:SO1892 acetate CoA-transferase, subunit A; 3-oxoacid CoA-transferase 1646560 4603609 Sama_1357 Shewanella amazonensis SB2B 3-oxoacid CoA-transferase YP_927234.1 1645859 R 326297 CDS YP_927235.1 119774495 4603610 complement(1646667..1647557) 1 NC_008700.1 KEGG: she:Shewmr4_2326 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1647557 4603610 Sama_1358 Shewanella amazonensis SB2B pyruvate carboxyltransferase YP_927235.1 1646667 R 326297 CDS YP_927236.1 119774496 4603611 complement(1647559..1649580) 1 NC_008700.1 KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; 3-methylcrotonyl-CoA carboxylase subunit alpha 1649580 4603611 Sama_1359 Shewanella amazonensis SB2B 3-methylcrotonyl-CoA carboxylase subunit alpha YP_927236.1 1647559 R 326297 CDS YP_927237.1 119774497 4603612 complement(1649591..1650421) 1 NC_008700.1 KEGG: sdn:Sden_2247 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1650421 4603612 Sama_1360 Shewanella amazonensis SB2B enoyl-CoA hydratase/isomerase YP_927237.1 1649591 R 326297 CDS YP_927238.1 119774498 4603613 complement(1650432..1652039) 1 NC_008700.1 KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; propionyl-CoA carboxylase 1652039 4603613 Sama_1361 Shewanella amazonensis SB2B propionyl-CoA carboxylase YP_927238.1 1650432 R 326297 CDS YP_927239.1 119774499 4603614 complement(1652157..1653326) 1 NC_008700.1 KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 1653326 4603614 Sama_1362 Shewanella amazonensis SB2B isovaleryl-CoA dehydrogenase YP_927239.1 1652157 R 326297 CDS YP_927240.1 119774500 4603615 complement(1653411..1653815) 1 NC_008700.1 KEGG: son:SO1898 transcriptional regulator, putative; MerR family transcriptional regulator 1653815 4603615 Sama_1363 Shewanella amazonensis SB2B MerR family transcriptional regulator YP_927240.1 1653411 R 326297 CDS YP_927241.1 119774501 4603616 1654188..1656122 1 NC_008700.1 KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; acyl-coenzyme A synthetase/AMP-(fatty) acid ligase 1656122 4603616 Sama_1364 Shewanella amazonensis SB2B acyl-coenzyme A synthetase/AMP-(fatty) acid ligase YP_927241.1 1654188 D 326297 CDS YP_927242.1 119774502 4603617 1656305..1657840 1 NC_008700.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1657840 4603617 Sama_1365 Shewanella amazonensis SB2B 6-phosphogluconate dehydrogenase YP_927242.1 1656305 D 326297 CDS YP_927243.1 119774503 4603618 complement(1657990..1658955) 1 NC_008700.1 KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1658955 4603618 Sama_1366 Shewanella amazonensis SB2B 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_927243.1 1657990 R 326297 CDS YP_927244.1 119774504 4603619 1659088..1659984 1 NC_008700.1 KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 1659984 4603619 Sama_1367 Shewanella amazonensis SB2B short chain dehydrogenase/reductase family oxidoreductase YP_927244.1 1659088 D 326297 CDS YP_927245.1 119774505 4603620 1660050..1660919 1 NC_008700.1 KEGG: son:SO1912 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 1660919 4603620 Sama_1368 Shewanella amazonensis SB2B palmitoyl-CoA hydrolase YP_927245.1 1660050 D 326297 CDS YP_927246.1 119774506 4603621 1660919..1661326 1 NC_008700.1 KEGG: son:SO1913 hypothetical protein; hypothetical protein 1661326 4603621 Sama_1369 Shewanella amazonensis SB2B hypothetical protein YP_927246.1 1660919 D 326297 CDS YP_927247.1 119774507 4603622 1661333..1661920 1 NC_008700.1 KEGG: son:SO1672 hypothetical protein; hypothetical protein 1661920 4603622 Sama_1370 Shewanella amazonensis SB2B hypothetical protein YP_927247.1 1661333 D 326297 CDS YP_927248.1 119774508 4603623 1662435..1663076 1 NC_008700.1 receptor for colicin S4; outer membrane protein W 1663076 4603623 Sama_1371 Shewanella amazonensis SB2B outer membrane protein W YP_927248.1 1662435 D 326297 CDS YP_927249.1 119774509 4603624 complement(1663163..1663987) 1 NC_008700.1 KEGG: son:SO1674 short chain dehydrogenase family protein; short chain dehydrogenase family protein 1663987 4603624 Sama_1372 Shewanella amazonensis SB2B short chain dehydrogenase family protein YP_927249.1 1663163 R 326297 CDS YP_927250.1 119774510 4603625 1664025..1664435 1 NC_008700.1 KEGG: son:SO1675 hypothetical protein; hypothetical protein 1664435 4603625 Sama_1373 Shewanella amazonensis SB2B hypothetical protein YP_927250.1 1664025 D 326297 CDS YP_927251.1 119774511 4603626 1664497..1665447 1 NC_008700.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1665447 4603626 Sama_1374 Shewanella amazonensis SB2B homoserine O-succinyltransferase YP_927251.1 1664497 D 326297 CDS YP_927252.1 119774512 4603627 1665719..1666897 1 NC_008700.1 KEGG: son:SO1677 acetyl-CoA acetyltransferase; Acetyl-CoA C-acetyltransferase 1666897 4603627 Sama_1375 Shewanella amazonensis SB2B Acetyl-CoA C-acetyltransferase YP_927252.1 1665719 D 326297 CDS YP_927253.1 119774513 4603628 1667012..1668505 1 NC_008700.1 KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1668505 4603628 Sama_1376 Shewanella amazonensis SB2B methylmalonate-semialdehyde dehydrogenase YP_927253.1 1667012 D 326297 CDS YP_927254.1 119774514 4603629 1668615..1669772 1 NC_008700.1 KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; butyryl-CoA dehydrogenase 1669772 4603629 Sama_1377 Shewanella amazonensis SB2B butyryl-CoA dehydrogenase YP_927254.1 1668615 D 326297 CDS YP_927255.1 119774515 4603630 1669826..1670599 1 NC_008700.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1670599 4603630 Sama_1378 Shewanella amazonensis SB2B enoyl-CoA hydratase YP_927255.1 1669826 D 326297 CDS YP_927256.1 119774516 4603631 1670638..1671744 1 NC_008700.1 KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein 1671744 4603631 Sama_1379 Shewanella amazonensis SB2B enoyl-CoA hydratase/isomerase family protein YP_927256.1 1670638 D 326297 CDS YP_927257.1 119774517 4603632 1671828..1672733 1 NC_008700.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 1672733 4603632 Sama_1380 Shewanella amazonensis SB2B 3-hydroxyisobutyrate dehydrogenase YP_927257.1 1671828 D 326297 CDS YP_927258.1 119774518 4603633 1672743..1673501 1 NC_008700.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1673501 fabG 4603633 fabG Shewanella amazonensis SB2B 3-ketoacyl-ACP reductase YP_927258.1 1672743 D 326297 CDS YP_927259.1 119774519 4603634 1673593..1673913 1 NC_008700.1 KEGG: sdn:Sden_1936 hypothetical protein; hypothetical protein 1673913 4603634 Sama_1382 Shewanella amazonensis SB2B hypothetical protein YP_927259.1 1673593 D 326297 CDS YP_927260.1 119774520 4603635 1673968..1676028 1 NC_008700.1 KEGG: son:SO1686 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 1676028 4603635 Sama_1383 Shewanella amazonensis SB2B prolyl oligopeptidase family protein YP_927260.1 1673968 D 326297 CDS YP_927261.1 119774521 4603636 complement(1676123..1676803) 1 NC_008700.1 KEGG: eca:ECA3190 streptogramin A acetyl transferase; streptogramin A acetyl transferase 1676803 4603636 Sama_1384 Shewanella amazonensis SB2B streptogramin A acetyl transferase YP_927261.1 1676123 R 326297 CDS YP_927262.1 119774522 4603637 complement(1676878..1677390) 1 NC_008700.1 KEGG: ppr:PBPRB1050 hypothetical protein; hypothetical protein 1677390 4603637 Sama_1385 Shewanella amazonensis SB2B hypothetical protein YP_927262.1 1676878 R 326297 CDS YP_927263.1 119774523 4603638 1677573..1679168 1 NC_008700.1 KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1679168 4603638 Sama_1386 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_927263.1 1677573 D 326297 CDS YP_927264.1 119774524 4603639 1679345..1679725 1 NC_008700.1 KEGG: pat:Patl_1937 hypothetical protein; hypothetical protein 1679725 4603639 Sama_1387 Shewanella amazonensis SB2B hypothetical protein YP_927264.1 1679345 D 326297 CDS YP_927265.1 119774525 4603640 complement(1679815..1680708) 1 NC_008700.1 KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator 1680708 4603640 Sama_1388 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927265.1 1679815 R 326297 CDS YP_927266.1 119774526 4603641 1680855..1681295 1 NC_008700.1 KEGG: son:SO3319 hypothetical protein; hypothetical protein 1681295 4603641 Sama_1389 Shewanella amazonensis SB2B hypothetical protein YP_927266.1 1680855 D 326297 CDS YP_927267.1 119774527 4603642 1681305..1682000 1 NC_008700.1 KEGG: vpa:VPA0042 hypothetical protein; hypothetical protein 1682000 4603642 Sama_1390 Shewanella amazonensis SB2B hypothetical protein YP_927267.1 1681305 D 326297 CDS YP_927268.1 119774528 4603643 1682171..1682764 1 NC_008700.1 KEGG: vpa:VPA0465 putative NAD(P)H oxidoreductase; putative NAD(P)H oxidoreductase 1682764 4603643 Sama_1391 Shewanella amazonensis SB2B putative NAD(P)H oxidoreductase YP_927268.1 1682171 D 326297 CDS YP_927269.1 119774529 4603644 1682761..1684686 1 NC_008700.1 KEGG: vpa:VPA0464 putative TrkA family protein; putative TrkA family protein 1684686 4603644 Sama_1392 Shewanella amazonensis SB2B putative TrkA family protein YP_927269.1 1682761 D 326297 CDS YP_927270.1 119774530 4603645 complement(1684735..1685295) 1 NC_008700.1 KEGG: son:SO1715 hypothetical protein; hypothetical protein 1685295 4603645 Sama_1393 Shewanella amazonensis SB2B hypothetical protein YP_927270.1 1684735 R 326297 CDS YP_927271.1 119774531 4603646 complement(1685437..1687578) 1 NC_008700.1 KEGG: pat:Patl_2402 TonB-dependent receptor, plug; TonB-dependent receptor, plug 1687578 4603646 Sama_1394 Shewanella amazonensis SB2B TonB-dependent receptor, plug YP_927271.1 1685437 R 326297 CDS YP_927272.1 119774532 4603647 1687831..1688274 1 NC_008700.1 KEGG: vpa:VPA0219 hypothetical protein; hypothetical protein 1688274 4603647 Sama_1395 Shewanella amazonensis SB2B hypothetical protein YP_927272.1 1687831 D 326297 CDS YP_927273.1 119774533 4603648 1688784..1691438 1 NC_008700.1 KEGG: cps:CPS_3716 glycosyl hydrolase, family 16; glucan endo-1,3-beta-D-glucosidase 1691438 4603648 Sama_1396 Shewanella amazonensis SB2B glucan endo-1,3-beta-D-glucosidase YP_927273.1 1688784 D 326297 CDS YP_927274.1 119774534 4603649 1691528..1694554 1 NC_008700.1 KEGG: sdn:Sden_2610 TonB-dependent receptor; TonB-dependent receptor 1694554 4603649 Sama_1397 Shewanella amazonensis SB2B TonB-dependent receptor YP_927274.1 1691528 D 326297 CDS YP_927275.1 119774535 4603650 complement(1694638..1695435) 1 NC_008700.1 KEGG: vvu:VV12807 hypothetical protein; hypothetical protein 1695435 4603650 Sama_1398 Shewanella amazonensis SB2B hypothetical protein YP_927275.1 1694638 R 326297 CDS YP_927276.1 119774536 4603651 complement(1695646..1698549) 1 NC_008700.1 KEGG: sdn:Sden_2610 TonB-dependent receptor; TonB-dependent receptor 1698549 4603651 Sama_1399 Shewanella amazonensis SB2B TonB-dependent receptor YP_927276.1 1695646 R 326297 CDS YP_927277.1 119774537 4603652 complement(1698830..1699828) 1 NC_008700.1 KEGG: sdn:Sden_2609 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1699828 4603652 Sama_1400 Shewanella amazonensis SB2B periplasmic binding protein/LacI transcriptional regulator YP_927277.1 1698830 R 326297 CDS YP_927278.1 119774538 4603653 complement(1699855..1701189) 1 NC_008700.1 KEGG: sdn:Sden_2608 sugar (glycoside-Pentoside-Hexuronide) transporter; sugar (glycoside-Pentoside-hexuronide) transporter 1701189 4603653 Sama_1401 Shewanella amazonensis SB2B sugar (glycoside-Pentoside-hexuronide) transporter YP_927278.1 1699855 R 326297 CDS YP_927279.1 119774539 4603654 complement(1701207..1702565) 1 NC_008700.1 KEGG: sdn:Sden_2607 beta-glucosidase; Beta-glucosidase 1702565 4603654 Sama_1402 Shewanella amazonensis SB2B Beta-glucosidase YP_927279.1 1701207 R 326297 CDS YP_927280.1 119774540 4603655 1702793..1704040 1 NC_008700.1 KEGG: sdn:Sden_2027 glucose/galactose transporter; glucose/galactose transporter 1704040 4603655 Sama_1403 Shewanella amazonensis SB2B glucose/galactose transporter YP_927280.1 1702793 D 326297 CDS YP_927281.1 119774541 4603656 1704037..1706616 1 NC_008700.1 KEGG: sdn:Sden_2605 beta-glucosidase; beta-glucosidase 1706616 4603656 Sama_1404 Shewanella amazonensis SB2B beta-glucosidase YP_927281.1 1704037 D 326297 CDS YP_927282.1 119774542 4603657 1706682..1707614 1 NC_008700.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1707614 4603657 Sama_1405 Shewanella amazonensis SB2B fructokinase YP_927282.1 1706682 D 326297 CDS YP_927283.1 119774543 4603658 1707878..1708816 1 NC_008700.1 KEGG: sdn:Sden_1682 protein of unknown function DUF6, transmembrane; hypothetical protein 1708816 4603658 Sama_1406 Shewanella amazonensis SB2B hypothetical protein YP_927283.1 1707878 D 326297 CDS YP_927284.1 119774544 4603659 complement(1708823..1709323) 1 NC_008700.1 KEGG: son:SO1722 ACT domain protein; ACT domain-containing protein 1709323 4603659 Sama_1407 Shewanella amazonensis SB2B ACT domain-containing protein YP_927284.1 1708823 R 326297 CDS YP_927285.1 119774545 4603660 1709536..1711791 1 NC_008700.1 KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1711791 4603660 Sama_1408 Shewanella amazonensis SB2B phosphate ABC transporter permease YP_927285.1 1709536 D 326297 CDS YP_927286.1 119774546 4603661 1711855..1713507 1 NC_008700.1 KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1713507 4603661 Sama_1409 Shewanella amazonensis SB2B phosphate ABC transporter permease YP_927286.1 1711855 D 326297 CDS YP_927287.1 119774547 4603662 1713543..1714361 1 NC_008700.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1714361 4603662 Sama_1410 Shewanella amazonensis SB2B phosphate transporter ATP-binding protein YP_927287.1 1713543 D 326297 CDS YP_927288.1 119774548 4603663 1714385..1715095 1 NC_008700.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1715095 4603663 Sama_1411 Shewanella amazonensis SB2B transcriptional regulator PhoU YP_927288.1 1714385 D 326297 CDS YP_927289.1 119774549 4603664 1715337..1715909 1 NC_008700.1 KEGG: son:SO1736 hypothetical protein; hypothetical protein 1715909 4603664 Sama_1412 Shewanella amazonensis SB2B hypothetical protein YP_927289.1 1715337 D 326297 CDS YP_927290.1 119774550 4603665 complement(1716051..1716452) 1 NC_008700.1 KEGG: son:SO0883 hypothetical protein; hypothetical protein 1716452 4603665 Sama_1413 Shewanella amazonensis SB2B hypothetical protein YP_927290.1 1716051 R 326297 CDS YP_927291.1 119774551 4603666 complement(1716490..1716903) 1 NC_008700.1 KEGG: rme:Rmet_5065 hypothetical protein; hypothetical protein 1716903 4603666 Sama_1414 Shewanella amazonensis SB2B hypothetical protein YP_927291.1 1716490 R 326297 CDS YP_927292.1 119774552 4603667 complement(1716968..1717834) 1 NC_008700.1 KEGG: sdn:Sden_2195 beta-lactamase-like protein; beta-lactamase-like protein 1717834 4603667 Sama_1415 Shewanella amazonensis SB2B beta-lactamase-like protein YP_927292.1 1716968 R 326297 CDS YP_927293.1 119774553 4603668 1718572..1720320 1 NC_008700.1 KEGG: vpa:VPA0991 hypothetical protein; hypothetical protein 1720320 4603668 Sama_1416 Shewanella amazonensis SB2B hypothetical protein YP_927293.1 1718572 D 326297 CDS YP_927294.1 119774554 4603669 complement(1720428..1722065) 1 NC_008700.1 KEGG: vpa:VPA0990 hypothetical protein; hypothetical protein 1722065 4603669 Sama_1417 Shewanella amazonensis SB2B hypothetical protein YP_927294.1 1720428 R 326297 CDS YP_927295.1 119774555 4603670 complement(1722268..1723611) 1 NC_008700.1 KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family; response regulator receiver protein 1723611 4603670 Sama_1418 Shewanella amazonensis SB2B response regulator receiver protein YP_927295.1 1722268 R 326297 CDS YP_927296.1 119774556 4603671 complement(1723751..1726810) 1 NC_008700.1 KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 1726810 4603671 Sama_1419 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_927296.1 1723751 R 326297 CDS YP_927297.1 119774557 4603672 complement(1726807..1730052) 1 NC_008700.1 KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 1730052 4603672 Sama_1420 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_927297.1 1726807 R 326297 CDS YP_927298.1 119774558 4603673 complement(1730065..1731129) 1 NC_008700.1 KEGG: son:SO1925 HlyD family secretion protein; HlyD family secretion protein 1731129 4603673 Sama_1421 Shewanella amazonensis SB2B HlyD family secretion protein YP_927298.1 1730065 R 326297 CDS YP_927299.1 119774559 4603674 complement(1731406..1732692) 1 NC_008700.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1732692 gltA 4603674 gltA Shewanella amazonensis SB2B type II citrate synthase YP_927299.1 1731406 R 326297 CDS YP_927300.1 119774560 4603675 1733105..1733500 1 NC_008700.1 KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 1733500 4603675 Sama_1423 Shewanella amazonensis SB2B succinate dehydrogenase, cytochrome b556 subunit YP_927300.1 1733105 D 326297 CDS YP_927301.1 119774561 4603676 1733494..1733841 1 NC_008700.1 KEGG: sdn:Sden_2186 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome subunit B 1733841 4603676 Sama_1424 Shewanella amazonensis SB2B succinate dehydrogenase, cytochrome subunit B YP_927301.1 1733494 D 326297 CDS YP_927302.1 119774562 4603677 1733843..1735609 1 NC_008700.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1735609 sdhA 4603677 sdhA Shewanella amazonensis SB2B succinate dehydrogenase flavoprotein subunit YP_927302.1 1733843 D 326297 CDS YP_927303.1 119774563 4603678 1735622..1736329 1 NC_008700.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1736329 sdhB 4603678 sdhB Shewanella amazonensis SB2B succinate dehydrogenase iron-sulfur subunit YP_927303.1 1735622 D 326297 CDS YP_927304.1 119774564 4603679 1736522..1739344 1 NC_008700.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1739344 sucA 4603679 sucA Shewanella amazonensis SB2B 2-oxoglutarate dehydrogenase E1 component YP_927304.1 1736522 D 326297 CDS YP_927305.1 119774565 4603680 1739373..1740575 1 NC_008700.1 KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) 1740575 4603680 Sama_1428 Shewanella amazonensis SB2B 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) YP_927305.1 1739373 D 326297 CDS YP_927306.1 119774566 4603681 1740653..1741819 1 NC_008700.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1741819 sucC 4603681 sucC Shewanella amazonensis SB2B succinyl-CoA synthetase subunit beta YP_927306.1 1740653 D 326297 CDS YP_927307.1 119774567 4603682 1741819..1742691 1 NC_008700.1 KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase alpha chain 1742691 4603682 Sama_1430 Shewanella amazonensis SB2B succinyl-CoA synthetase alpha chain YP_927307.1 1741819 D 326297 CDS YP_927308.1 119774568 4603683 1742800..1743717 1 NC_008700.1 KEGG: sdn:Sden_2179 auxin efflux carrier; auxin efflux carrier 1743717 4603683 Sama_1431 Shewanella amazonensis SB2B auxin efflux carrier YP_927308.1 1742800 D 326297 CDS YP_927309.1 119774569 4603684 1743844..1744347 1 NC_008700.1 KEGG: sdn:Sden_1591 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1744347 4603684 Sama_1432 Shewanella amazonensis SB2B N-acetyltransferase GCN5 YP_927309.1 1743844 D 326297 CDS YP_927310.1 119774570 4603685 1744664..1745074 1 NC_008700.1 KEGG: son:SO1935 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 1745074 4603685 Sama_1433 Shewanella amazonensis SB2B GreA/GreB family elongation factor YP_927310.1 1744664 D 326297 CDS YP_927311.1 119774571 4603686 complement(1745162..1745647) 1 NC_008700.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 1745647 fur 4603686 fur Shewanella amazonensis SB2B ferric uptake regulator YP_927311.1 1745162 R 326297 CDS YP_927312.1 119774572 4603687 1745846..1746592 1 NC_008700.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1746592 4603687 Sama_1435 Shewanella amazonensis SB2B NAD-dependent deacetylase YP_927312.1 1745846 D 326297 CDS YP_927313.1 119774573 4603688 1746650..1747036 1 NC_008700.1 KEGG: son:SO1939 hypothetical protein; hypothetical protein 1747036 4603688 Sama_1436 Shewanella amazonensis SB2B hypothetical protein YP_927313.1 1746650 D 326297 CDS YP_927314.1 119774574 4603689 complement(1747044..1748354) 1 NC_008700.1 KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1748354 4603689 Sama_1437 Shewanella amazonensis SB2B adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_927314.1 1747044 R 326297 CDS YP_927315.1 119774575 4603690 1748465..1749529 1 NC_008700.1 KEGG: son:SO2740 biotin synthase; biotin synthase 1749529 4603690 Sama_1438 Shewanella amazonensis SB2B biotin synthase YP_927315.1 1748465 D 326297 CDS YP_927316.1 119774576 4603691 1749546..1750703 1 NC_008700.1 KEGG: she:Shewmr4_2358 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1750703 4603691 Sama_1439 Shewanella amazonensis SB2B 8-amino-7-oxononanoate synthase YP_927316.1 1749546 D 326297 CDS YP_927317.1 119774577 4603692 1750700..1751446 1 NC_008700.1 KEGG: son:SO2738 biotin synthesis protein BioC; biotin synthesis protein BioC 1751446 4603692 Sama_1440 Shewanella amazonensis SB2B biotin synthesis protein BioC YP_927317.1 1750700 D 326297 CDS YP_927318.1 119774578 4603693 1751443..1752135 1 NC_008700.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1752135 bioD 4603693 bioD Shewanella amazonensis SB2B dithiobiotin synthetase YP_927318.1 1751443 D 326297 CDS YP_927319.1 119774579 4603694 complement(1752234..1752941) 1 NC_008700.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1752941 4603694 Sama_1442 Shewanella amazonensis SB2B peptidase E YP_927319.1 1752234 R 326297 CDS YP_927320.1 119774580 4603695 1753224..1754114 1 NC_008700.1 putative metalloprotease; heat shock protein HtpX 1754114 4603695 Sama_1443 Shewanella amazonensis SB2B heat shock protein HtpX YP_927320.1 1753224 D 326297 CDS YP_927321.1 119774581 4603696 1754414..1754779 1 NC_008700.1 KEGG: son:SO2727 cytochrome c3; cytochrome c3 1754779 4603696 Sama_1444 Shewanella amazonensis SB2B cytochrome c3 YP_927321.1 1754414 D 326297 CDS YP_927322.1 119774582 4603697 1754883..1756043 1 NC_008700.1 KEGG: pha:PSHAa2962 hypothetical protein; hypothetical protein 1756043 4603697 Sama_1445 Shewanella amazonensis SB2B hypothetical protein YP_927322.1 1754883 D 326297 CDS YP_927323.1 119774583 4603698 1756407..1757039 1 NC_008700.1 KEGG: sdn:Sden_2327 regulatory protein, LuxR; response regulator receiver protein 1757039 4603698 Sama_1446 Shewanella amazonensis SB2B response regulator receiver protein YP_927323.1 1756407 D 326297 CDS YP_927324.1 119774584 4603699 complement(1757126..1758889) 1 NC_008700.1 KEGG: son:SO2724 protease, putative; protease 1758889 4603699 Sama_1447 Shewanella amazonensis SB2B protease YP_927324.1 1757126 R 326297 CDS YP_927325.1 119774585 4603700 1759077..1759430 1 NC_008700.1 KEGG: son:SO2723 HIT family protein; HIT family protein 1759430 4603700 Sama_1448 Shewanella amazonensis SB2B HIT family protein YP_927325.1 1759077 D 326297 CDS YP_927326.1 119774586 4603701 1759442..1760431 1 NC_008700.1 KEGG: sdn:Sden_2324 phenylacetic acid degradation-related protein; hypothetical protein 1760431 4603701 Sama_1449 Shewanella amazonensis SB2B hypothetical protein YP_927326.1 1759442 D 326297 CDS YP_927327.1 119774587 4603702 1760582..1761001 1 NC_008700.1 KEGG: son:SO2720 hypothetical protein; hypothetical protein 1761001 4603702 Sama_1450 Shewanella amazonensis SB2B hypothetical protein YP_927327.1 1760582 D 326297 CDS YP_927328.1 119774588 4603703 1761372..1763564 1 NC_008700.1 KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 1763564 4603703 Sama_1451 Shewanella amazonensis SB2B TonB-dependent receptor YP_927328.1 1761372 D 326297 CDS YP_927329.1 119774589 4603704 1763626..1763889 1 NC_008700.1 KEGG: son:SO2714 hypothetical protein; hypothetical protein 1763889 4603704 Sama_1452 Shewanella amazonensis SB2B hypothetical protein YP_927329.1 1763626 D 326297 CDS YP_927330.1 119774590 4603705 1763893..1764540 1 NC_008700.1 KEGG: son:SO2713 transporter, putative; transporter 1764540 4603705 Sama_1453 Shewanella amazonensis SB2B transporter YP_927330.1 1763893 D 326297 CDS YP_927331.1 119774591 4603706 1764537..1765565 1 NC_008700.1 KEGG: sdn:Sden_2318 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1765565 4603706 Sama_1454 Shewanella amazonensis SB2B aminoglycoside phosphotransferase YP_927331.1 1764537 D 326297 CDS YP_927332.1 119774592 4603707 1765629..1766477 1 NC_008700.1 KEGG: sdn:Sden_2317 hypothetical protein; hypothetical protein 1766477 4603707 Sama_1455 Shewanella amazonensis SB2B hypothetical protein YP_927332.1 1765629 D 326297 CDS YP_927333.1 119774593 4603708 1766619..1767215 1 NC_008700.1 KEGG: son:SO2710 hypothetical protein; hypothetical protein 1767215 4603708 Sama_1456 Shewanella amazonensis SB2B hypothetical protein YP_927333.1 1766619 D 326297 CDS YP_927334.1 119774594 4603709 1767332..1767880 1 NC_008700.1 KEGG: son:SO2708 nitroreductase family protein; nitroreductase family protein 1767880 4603709 Sama_1457 Shewanella amazonensis SB2B nitroreductase family protein YP_927334.1 1767332 D 326297 CDS YP_927335.1 119774595 4603710 complement(1767926..1768660) 1 NC_008700.1 KEGG: vvy:VV2889 uncharacterized flavoprotein; flavoprotein 1768660 4603710 Sama_1458 Shewanella amazonensis SB2B flavoprotein YP_927335.1 1767926 R 326297 CDS YP_927336.1 119774596 4603711 complement(1768677..1769288) 1 NC_008700.1 KEGG: vvy:VV2888 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1769288 4603711 Sama_1459 Shewanella amazonensis SB2B methyl-accepting chemotaxis protein YP_927336.1 1768677 R 326297 CDS YP_927337.1 119774597 4603712 1769384..1769893 1 NC_008700.1 KEGG: son:SO2707 acetyltransferase, GNAT family; acetyltransferase 1769893 4603712 Sama_1460 Shewanella amazonensis SB2B acetyltransferase YP_927337.1 1769384 D 326297 CDS YP_927338.1 119774598 4603713 1770080..1770703 1 NC_008700.1 KEGG: son:SO3563 SM-20 domain protein; SM-20 domain-containing protein 1770703 4603713 Sama_1461 Shewanella amazonensis SB2B SM-20 domain-containing protein YP_927338.1 1770080 D 326297 CDS YP_927339.1 119774599 4603714 complement(1770781..1772280) 1 NC_008700.1 KEGG: rba:RB5189 hypothetical protein-transmembrane prediction; hypothetical protein 1772280 4603714 Sama_1462 Shewanella amazonensis SB2B hypothetical protein YP_927339.1 1770781 R 326297 CDS YP_927340.1 119774600 4603715 complement(1772306..1773613) 1 NC_008700.1 KEGG: bja:bll5078 hypothetical protein; hypothetical protein 1773613 4603715 Sama_1463 Shewanella amazonensis SB2B hypothetical protein YP_927340.1 1772306 R 326297 CDS YP_927341.1 119774601 4603716 complement(1773623..1774795) 1 NC_008700.1 KEGG: 5-oxo-L-prolinase, putative; hypothetical protein 1774795 4603716 Sama_1464 Shewanella amazonensis SB2B hypothetical protein YP_927341.1 1773623 R 326297 CDS YP_927342.1 119774602 4603717 1775050..1775670 1 NC_008700.1 KEGG: son:SO2850 acetyltransferase, GNAT family; acetyltransferase 1775670 4603717 Sama_1465 Shewanella amazonensis SB2B acetyltransferase YP_927342.1 1775050 D 326297 CDS YP_927343.1 119774603 4603718 1775777..1776190 1 NC_008700.1 KEGG: son:SO2848 hypothetical protein; hypothetical protein 1776190 4603718 Sama_1466 Shewanella amazonensis SB2B hypothetical protein YP_927343.1 1775777 D 326297 CDS YP_927344.1 119774604 4603719 1776409..1776789 1 NC_008700.1 hypothetical protein 1776789 4603719 Sama_1467 Shewanella amazonensis SB2B hypothetical protein YP_927344.1 1776409 D 326297 CDS YP_927345.1 119774605 4603720 1776898..1777590 1 NC_008700.1 KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein; putative macrolide efflux ABC transporter ATP-binding protein 1777590 4603720 Sama_1468 Shewanella amazonensis SB2B putative macrolide efflux ABC transporter ATP-binding protein YP_927345.1 1776898 D 326297 CDS YP_927346.1 119774606 4603721 1777583..1778563 1 NC_008700.1 KEGG: pae:PA4591 hypothetical protein; multidrug resistance efflux pump-like protein 1778563 4603721 Sama_1469 Shewanella amazonensis SB2B multidrug resistance efflux pump-like protein YP_927346.1 1777583 D 326297 CDS YP_927347.1 119774607 4603722 1778560..1779744 1 NC_008700.1 KEGG: dvu:DVU2439 efflux transporter, RND family, MFP subunit; membrane-fusion protein 1779744 4603722 Sama_1470 Shewanella amazonensis SB2B membrane-fusion protein YP_927347.1 1778560 D 326297 CDS YP_927348.1 119774608 4603723 1779741..1780943 1 NC_008700.1 KEGG: ttj:TTHA1006 HlyD family secretion protein; membrane-fusion protein 1780943 4603723 Sama_1471 Shewanella amazonensis SB2B membrane-fusion protein YP_927348.1 1779741 D 326297 CDS YP_927349.1 119774609 4603724 1780940..1782193 1 NC_008700.1 KEGG: tel:tll1383 ABC transporter permease protein; ABC transporter permease 1782193 4603724 Sama_1472 Shewanella amazonensis SB2B ABC transporter permease YP_927349.1 1780940 D 326297 CDS YP_927350.1 119774610 4603725 complement(1782168..1782974) 1 NC_008700.1 KEGG: son:SO1839 hypothetical protein; hypothetical protein 1782974 4603725 Sama_1473 Shewanella amazonensis SB2B hypothetical protein YP_927350.1 1782168 R 326297 CDS YP_927351.1 119774611 4603726 1783169..1784260 1 NC_008700.1 KEGG: son:SO1840 hypothetical protein; hypothetical protein 1784260 4603726 Sama_1474 Shewanella amazonensis SB2B hypothetical protein YP_927351.1 1783169 D 326297 CDS YP_927352.1 119774612 4603727 1784250..1785296 1 NC_008700.1 KEGG: bpe:BP0459 hypothetical protein; hypothetical protein 1785296 4603727 Sama_1475 Shewanella amazonensis SB2B hypothetical protein YP_927352.1 1784250 D 326297 CDS YP_927353.1 119774613 4603728 1785293..1785793 1 NC_008700.1 KEGG: son:SO1843 hypothetical protein; hypothetical protein 1785793 4603728 Sama_1476 Shewanella amazonensis SB2B hypothetical protein YP_927353.1 1785293 D 326297 CDS YP_927354.1 119774614 4603729 1786054..1788897 1 NC_008700.1 KEGG: sdn:Sden_2272 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1788897 4603729 Sama_1477 Shewanella amazonensis SB2B endonuclease/exonuclease/phosphatase YP_927354.1 1786054 D 326297 CDS YP_927355.1 119774615 4603730 1789277..1790353 1 NC_008700.1 KEGG: vvy:VVA1362 arsenite efflux pump ACR3; arsenite efflux pump ACR3 1790353 4603730 Sama_1478 Shewanella amazonensis SB2B arsenite efflux pump ACR3 YP_927355.1 1789277 D 326297 CDS YP_927356.1 119774616 4603731 complement(1790482..1790799) 1 NC_008700.1 KEGG: son:SO2062 hypothetical protein; hypothetical protein 1790799 4603731 Sama_1479 Shewanella amazonensis SB2B hypothetical protein YP_927356.1 1790482 R 326297 CDS YP_927357.1 119774617 4603732 complement(1790812..1791000) 1 NC_008700.1 KEGG: son:SO2063 hypothetical protein; hypothetical protein 1791000 4603732 Sama_1480 Shewanella amazonensis SB2B hypothetical protein YP_927357.1 1790812 R 326297 CDS YP_927358.1 119774618 4603733 complement(1791012..1794314) 1 NC_008700.1 KEGG: son:SO2064 hypothetical protein; hypothetical protein 1794314 4603733 Sama_1481 Shewanella amazonensis SB2B hypothetical protein YP_927358.1 1791012 R 326297 CDS YP_927359.1 119774619 4603734 complement(1794452..1795843) 1 NC_008700.1 KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative; aminotransferase 1795843 4603734 Sama_1482 Shewanella amazonensis SB2B aminotransferase YP_927359.1 1794452 R 326297 CDS YP_927360.1 119774620 4603735 complement(1796061..1797125) 1 NC_008700.1 KEGG: son:SO2929 hypothetical protein; hypothetical protein 1797125 4603735 Sama_1483 Shewanella amazonensis SB2B hypothetical protein YP_927360.1 1796061 R 326297 CDS YP_927361.1 119774621 4603736 complement(1797325..1798458) 1 NC_008700.1 KEGG: cps:CPS_0402 hypothetical protein; hypothetical protein 1798458 4603736 Sama_1484 Shewanella amazonensis SB2B hypothetical protein YP_927361.1 1797325 R 326297 CDS YP_927362.1 119774622 4603737 complement(1798568..1799155) 1 NC_008700.1 KEGG: sfr:Sfri_2568 arylesterase; arylesterase 1799155 4603737 Sama_1485 Shewanella amazonensis SB2B arylesterase YP_927362.1 1798568 R 326297 CDS YP_927363.1 119774623 4603738 1799184..1799933 1 NC_008700.1 KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1799933 4603738 Sama_1486 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_927363.1 1799184 D 326297 CDS YP_927364.1 119774624 4603739 1799927..1802383 1 NC_008700.1 KEGG: son:SO2926 ABC transporter, permease, putative; ABC transporter permease 1802383 4603739 Sama_1487 Shewanella amazonensis SB2B ABC transporter permease YP_927364.1 1799927 D 326297 CDS YP_927365.1 119774625 4603740 complement(1802387..1803274) 1 NC_008700.1 KEGG: sdn:Sden_2362 hypothetical protein; hypothetical protein 1803274 4603740 Sama_1488 Shewanella amazonensis SB2B hypothetical protein YP_927365.1 1802387 R 326297 CDS YP_927366.1 119774626 4603741 complement(1803333..1803701) 1 NC_008700.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1803701 folX 4603741 folX Shewanella amazonensis SB2B D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_927366.1 1803333 R 326297 CDS YP_927367.1 119774627 4603742 1803781..1804857 1 NC_008700.1 KEGG: son:SO2920 hypothetical protein; hypothetical protein 1804857 4603742 Sama_1490 Shewanella amazonensis SB2B hypothetical protein YP_927367.1 1803781 D 326297 CDS YP_927368.1 119774628 4603743 1804939..1805865 1 NC_008700.1 KEGG: sdn:Sden_2359 hypothetical protein; hypothetical protein 1805865 4603743 Sama_1491 Shewanella amazonensis SB2B hypothetical protein YP_927368.1 1804939 D 326297 CDS YP_927369.1 119774629 4603744 complement(1806001..1806219) 1 NC_008700.1 KEGG: shm:Shewmr7_1552 hypothetical protein; hypothetical protein 1806219 4603744 Sama_1492 Shewanella amazonensis SB2B hypothetical protein YP_927369.1 1806001 R 326297 CDS YP_927370.1 119774630 4603745 complement(1806858..1807295) 1 NC_008700.1 KEGG: son:SO2917 hypothetical protein; hypothetical protein 1807295 4603745 Sama_1493 Shewanella amazonensis SB2B hypothetical protein YP_927370.1 1806858 R 326297 CDS YP_927371.1 119774631 4603746 complement(1807689..1809827) 1 NC_008700.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1809827 4603746 Sama_1494 Shewanella amazonensis SB2B phosphate acetyltransferase YP_927371.1 1807689 R 326297 CDS YP_927372.1 119774632 4603747 complement(1809919..1811118) 1 NC_008700.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1811118 4603747 Sama_1495 Shewanella amazonensis SB2B acetate kinase YP_927372.1 1809919 R 326297 CDS YP_927373.1 119774633 4603748 1811290..1811733 1 NC_008700.1 KEGG: son:SO2914 hypothetical protein; hypothetical protein 1811733 4603748 Sama_1496 Shewanella amazonensis SB2B hypothetical protein YP_927373.1 1811290 D 326297 CDS YP_927374.1 119774634 4603749 complement(1811791..1812531) 1 NC_008700.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1812531 pflA 4603749 pflA Shewanella amazonensis SB2B pyruvate formate lyase-activating enzyme 1 YP_927374.1 1811791 R 326297 CDS YP_927375.1 119774635 4603750 complement(1812619..1814901) 1 NC_008700.1 KEGG: son:SO2912 formate acetyltransferase; formate C-acetyltransferase 1814901 4603750 Sama_1498 Shewanella amazonensis SB2B formate C-acetyltransferase YP_927375.1 1812619 R 326297 CDS YP_927376.1 119774636 4603751 complement(1815297..1816862) 1 NC_008700.1 KEGG: sdn:Sden_2405 hypothetical protein; hypothetical protein 1816862 4603751 Sama_1499 Shewanella amazonensis SB2B hypothetical protein YP_927376.1 1815297 R 326297 CDS YP_927377.1 119774637 4603752 1817720..1819363 1 NC_008700.1 KEGG: ppr:PBPRA2766 hypothetical formate transporter 1; formate transporter 1819363 4603752 Sama_1500 Shewanella amazonensis SB2B formate transporter YP_927377.1 1817720 D 326297 CDS YP_927378.1 119774638 4603753 complement(1819370..1820284) 1 NC_008700.1 KEGG: vch:VCA0542 transcriptional regulator, LysR family; LysR family transcriptional regulator 1820284 4603753 Sama_1501 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927378.1 1819370 R 326297 CDS YP_927379.1 119774639 4603754 1820620..1822182 1 NC_008700.1 KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein 1822182 4603754 Sama_1502 Shewanella amazonensis SB2B hypothetical protein YP_927379.1 1820620 D 326297 CDS YP_927380.1 119774640 4603755 complement(1822416..1825115) 1 NC_008700.1 KEGG: vvy:VV0250 outer membrane receptor protein; outer membrane receptor protein 1825115 4603755 Sama_1503 Shewanella amazonensis SB2B outer membrane receptor protein YP_927380.1 1822416 R 326297 CDS YP_927381.1 119774641 4603756 complement(1825652..1826662) 1 NC_008700.1 KEGG: son:SO2906 hypothetical protein; hypothetical protein 1826662 4603756 Sama_1504 Shewanella amazonensis SB2B hypothetical protein YP_927381.1 1825652 R 326297 CDS YP_927382.1 119774642 4603757 complement(1826766..1827845) 1 NC_008700.1 KEGG: son:SO2905 O-methyltransferase, putative; O-methyltransferase 1827845 4603757 Sama_1505 Shewanella amazonensis SB2B O-methyltransferase YP_927382.1 1826766 R 326297 CDS YP_927383.1 119774643 4603758 complement(1828047..1830308) 1 NC_008700.1 KEGG: cps:CPS_0838 aminotransferase, class V; cysteine desulfurase 1830308 4603758 Sama_1506 Shewanella amazonensis SB2B cysteine desulfurase YP_927383.1 1828047 R 326297 CDS YP_927384.1 119774644 4603759 1830583..1831245 1 NC_008700.1 KEGG: psp:PSPPH_3872 transcriptional regulator, TetR family; TetR family transcriptional regulator 1831245 4603759 Sama_1507 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_927384.1 1830583 D 326297 CDS YP_927385.1 119774645 4603760 complement(1831345..1832313) 1 NC_008700.1 KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 1832313 4603760 Sama_1508 Shewanella amazonensis SB2B cysteine synthase A YP_927385.1 1831345 R 326297 CDS YP_927386.1 119774646 4603761 1832524..1833651 1 NC_008700.1 KEGG: son:SO2902 hypothetical protein; hypothetical protein 1833651 4603761 Sama_1509 Shewanella amazonensis SB2B hypothetical protein YP_927386.1 1832524 D 326297 CDS YP_927387.1 119774647 4603762 1833648..1834772 1 NC_008700.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1834772 4603762 Sama_1510 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_927387.1 1833648 D 326297 CDS YP_927388.1 119774648 4603763 1834784..1836034 1 NC_008700.1 KEGG: sfr:Sfri_2466 diguanylate cyclase; response regulator receiver protein 1836034 4603763 Sama_1511 Shewanella amazonensis SB2B response regulator receiver protein YP_927388.1 1834784 D 326297 CDS YP_927389.1 119774649 4603764 complement(1836134..1838500) 1 NC_008700.1 KEGG: son:SO2900 hypothetical protein; hypothetical protein 1838500 4603764 Sama_1512 Shewanella amazonensis SB2B hypothetical protein YP_927389.1 1836134 R 326297 CDS YP_927390.1 119774650 4603765 complement(1838630..1839424) 1 NC_008700.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 1839424 4603765 Sama_1513 Shewanella amazonensis SB2B putative sulfate transport protein CysZ YP_927390.1 1838630 R 326297 CDS YP_927391.1 119774651 4603766 1839719..1843138 1 NC_008700.1 KEGG: son:SO2898 SMC family protein; SMC family protein 1843138 4603766 Sama_1514 Shewanella amazonensis SB2B SMC family protein YP_927391.1 1839719 D 326297 CDS YP_927392.1 119774652 4603767 1843162..1844214 1 NC_008700.1 KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA 1844214 4603767 Sama_1515 Shewanella amazonensis SB2B cell division protein ZipA YP_927392.1 1843162 D 326297 CDS YP_927393.1 119774653 4603768 1844244..1846289 1 NC_008700.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; DNA ligase (NAD(+)) 1846289 4603768 Sama_1516 Shewanella amazonensis SB2B DNA ligase (NAD(+)) YP_927393.1 1844244 D 326297 CDS YP_927394.1 119774654 4603769 1846415..1847356 1 NC_008700.1 KEGG: cps:CPS_2237 microbial collagenase; collagenase 1847356 4603769 Sama_1517 Shewanella amazonensis SB2B collagenase YP_927394.1 1846415 D 326297 CDS YP_927395.1 119774655 4603770 1847479..1847970 1 NC_008700.1 KEGG: son:SO2863 hypothetical protein; hypothetical protein 1847970 4603770 Sama_1518 Shewanella amazonensis SB2B hypothetical protein YP_927395.1 1847479 D 326297 CDS YP_927396.1 119774656 4603771 1848494..1849708 1 NC_008700.1 KEGG: son:SO2862 HDIG domain protein; putative metal dependent phosphohydrolase 1849708 4603771 Sama_1519 Shewanella amazonensis SB2B putative metal dependent phosphohydrolase YP_927396.1 1848494 D 326297 CDS YP_927397.1 119774657 4603772 1849775..1850590 1 NC_008700.1 KEGG: sdn:Sden_2511 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1850590 4603772 Sama_1520 Shewanella amazonensis SB2B NAD-dependent epimerase/dehydratase YP_927397.1 1849775 D 326297 CDS YP_927398.1 119774658 4603773 1850669..1851226 1 NC_008700.1 KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 1851226 4603773 Sama_1521 Shewanella amazonensis SB2B DsbA family thiol:disulfide interchange protein YP_927398.1 1850669 D 326297 CDS YP_927399.1 119774659 4603774 1851483..1851749 1 NC_008700.1 KEGG: son:SO2858 hypothetical protein; hypothetical protein 1851749 4603774 Sama_1522 Shewanella amazonensis SB2B hypothetical protein YP_927399.1 1851483 D 326297 CDS YP_927400.1 119774660 4603775 1851761..1853479 1 NC_008700.1 KEGG: son:SO2857 sodium/solute symporter family protein; sodium/solute symporter family protein 1853479 4603775 Sama_1523 Shewanella amazonensis SB2B sodium/solute symporter family protein YP_927400.1 1851761 D 326297 CDS YP_927401.1 119774661 4603776 1853621..1855477 1 NC_008700.1 KEGG: son:SO2856 CBS domain protein; hypothetical protein 1855477 4603776 Sama_1524 Shewanella amazonensis SB2B hypothetical protein YP_927401.1 1853621 D 326297 CDS YP_927402.1 119774662 4603777 1855477..1856163 1 NC_008700.1 KEGG: son:SO2855 exonuclease; DNA polymerase III subunit epsilon-like 3'-5' exonuclease 1856163 4603777 Sama_1525 Shewanella amazonensis SB2B DNA polymerase III subunit epsilon-like 3'-5' exonuclease YP_927402.1 1855477 D 326297 CDS YP_927403.1 119774663 4603778 1856248..1856838 1 NC_008700.1 KEGG: son:SO2854 hypothetical protein; hypothetical protein 1856838 4603778 Sama_1526 Shewanella amazonensis SB2B hypothetical protein YP_927403.1 1856248 D 326297 CDS YP_927404.1 119774664 4603779 complement(1857000..1858064) 1 NC_008700.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 1858064 4603779 Sama_1527 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_927404.1 1857000 R 326297 CDS YP_927405.1 119774665 4603780 complement(1858155..1858826) 1 NC_008700.1 KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator 1858826 4603780 Sama_1528 Shewanella amazonensis SB2B GntR family transcriptional regulator YP_927405.1 1858155 R 326297 CDS YP_927406.1 119774666 4603781 complement(1858940..1860487) 1 NC_008700.1 KEGG: cps:CPS_1451 fatty aldehyde dehydrogenase; fatty aldehyde dehydrogenase 1860487 4603781 Sama_1529 Shewanella amazonensis SB2B fatty aldehyde dehydrogenase YP_927406.1 1858940 R 326297 CDS YP_927407.1 119774667 4603782 complement(1860524..1861525) 1 NC_008700.1 KEGG: hch:HCH_03167 proline racemase; hydroxyproline-2-epimerase 1861525 4603782 Sama_1530 Shewanella amazonensis SB2B hydroxyproline-2-epimerase YP_927407.1 1860524 R 326297 CDS YP_927408.1 119774668 4603783 complement(1861570..1862484) 1 NC_008700.1 KEGG: cps:CPS_1449 dihydrodipicolinate synthetase family protein; dihydrodipicolinate synthetase family protein 1862484 4603783 Sama_1531 Shewanella amazonensis SB2B dihydrodipicolinate synthetase family protein YP_927408.1 1861570 R 326297 CDS YP_927409.1 119774669 4603784 1862689..1863729 1 NC_008700.1 KEGG: cps:CPS_1453 putative proline racemase; putative proline racemase 1863729 4603784 Sama_1532 Shewanella amazonensis SB2B putative proline racemase YP_927409.1 1862689 D 326297 CDS YP_927410.1 119774670 4603785 1863740..1865026 1 NC_008700.1 KEGG: cps:CPS_1447 putative D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase 1865026 4603785 Sama_1533 Shewanella amazonensis SB2B D-amino-acid dehydrogenase YP_927410.1 1863740 D 326297 CDS YP_927411.1 119774671 4603786 complement(1865108..1866433) 1 NC_008700.1 KEGG: mca:MCA2770 xaa-pro aminopeptidase; xaa-pro aminopeptidase 1866433 4603786 Sama_1534 Shewanella amazonensis SB2B xaa-pro aminopeptidase YP_927411.1 1865108 R 326297 CDS YP_927412.1 119774672 4603787 1866598..1867152 1 NC_008700.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1867152 4603787 Sama_1535 Shewanella amazonensis SB2B D,D-heptose 1,7-bisphosphate phosphatase YP_927412.1 1866598 D 326297 CDS YP_927413.1 119774673 4605955 1873422..1873775 1 NC_008700.1 KEGG: son:SO1940 hypothetical protein; hypothetical protein 1873775 4605955 Sama_1536 Shewanella amazonensis SB2B hypothetical protein YP_927413.1 1873422 D 326297 CDS YP_927414.1 119774674 4603789 1873880..1874827 1 NC_008700.1 KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 1874827 4603789 Sama_1537 Shewanella amazonensis SB2B magnesium and cobalt transport protein CorA YP_927414.1 1873880 D 326297 CDS YP_927415.1 119774675 4603790 complement(1874831..1875136) 1 NC_008700.1 KEGG: ppr:PBPRA0237 hypothetical protein; hypothetical protein 1875136 4603790 Sama_1538 Shewanella amazonensis SB2B hypothetical protein YP_927415.1 1874831 R 326297 CDS YP_927416.1 119774676 4603791 complement(1875258..1876514) 1 NC_008700.1 KEGG: son:SO1942 HDIG domain protein; putative metal dependent phosphohydrolase 1876514 4603791 Sama_1539 Shewanella amazonensis SB2B putative metal dependent phosphohydrolase YP_927416.1 1875258 R 326297 CDS YP_927417.1 119774677 4603792 1876627..1877319 1 NC_008700.1 KEGG: son:SO1944 hypothetical protein; hypothetical protein 1877319 4603792 Sama_1540 Shewanella amazonensis SB2B hypothetical protein YP_927417.1 1876627 D 326297 CDS YP_927418.1 119774678 4603793 complement(1877346..1878698) 1 NC_008700.1 KEGG: son:SO1945 sensor protein PhoQ; sensor protein PhoQ 1878698 4603793 Sama_1541 Shewanella amazonensis SB2B sensor protein PhoQ YP_927418.1 1877346 R 326297 CDS YP_927419.1 119774679 4603794 complement(1878698..1879372) 1 NC_008700.1 KEGG: son:SO1946 transcriptional regulatory protein PhoP; response regulator receiver protein 1879372 4603794 Sama_1542 Shewanella amazonensis SB2B response regulator receiver protein YP_927419.1 1878698 R 326297 CDS YP_927420.1 119774680 4603795 1879547..1880401 1 NC_008700.1 KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; putative phosphonate ABC transporter periplasmic phosphonate-binding protein 1880401 4603795 Sama_1543 Shewanella amazonensis SB2B putative phosphonate ABC transporter periplasmic phosphonate-binding protein YP_927420.1 1879547 D 326297 CDS YP_927421.1 119774681 4603796 1880404..1881081 1 NC_008700.1 KEGG: sdn:Sden_1898 ABC transporter related; ABC transporter-like protein 1881081 4603796 Sama_1544 Shewanella amazonensis SB2B ABC transporter-like protein YP_927421.1 1880404 D 326297 CDS YP_927422.1 119774682 4603797 1881075..1882574 1 NC_008700.1 KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1882574 4603797 Sama_1545 Shewanella amazonensis SB2B binding-protein-dependent transport system inner membrane protein YP_927422.1 1881075 D 326297 CDS YP_927423.1 119774683 4603798 complement(1882738..1883079) 1 NC_008700.1 KEGG: son:SO1947 hypothetical protein; hypothetical protein 1883079 4603798 Sama_1546 Shewanella amazonensis SB2B hypothetical protein YP_927423.1 1882738 R 326297 CDS YP_927424.1 119774684 4603799 complement(1883192..1883980) 1 NC_008700.1 hypothetical protein 1883980 4603799 Sama_1547 Shewanella amazonensis SB2B hypothetical protein YP_927424.1 1883192 R 326297 CDS YP_927425.1 119774685 4603800 1884325..1885854 1 NC_008700.1 KEGG: sdn:Sden_1365 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 1885854 4603800 Sama_1548 Shewanella amazonensis SB2B ATP-binding region, ATPase-like protein YP_927425.1 1884325 D 326297 CDS YP_927426.1 119774686 4603801 1885854..1887188 1 NC_008700.1 KEGG: sdn:Sden_1366 sigma-54 factor, interaction region; response regulator receiver protein 1887188 4603801 Sama_1549 Shewanella amazonensis SB2B response regulator receiver protein YP_927426.1 1885854 D 326297 CDS YP_927427.1 119774687 4603802 complement(1887305..1887988) 1 NC_008700.1 KEGG: son:SO0765 threonine efflux protein, putative; threonine efflux protein 1887988 4603802 Sama_1550 Shewanella amazonensis SB2B threonine efflux protein YP_927427.1 1887305 R 326297 CDS YP_927428.1 119774688 4603803 complement(1887992..1888819) 1 NC_008700.1 KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC/XylS family transcriptional regulator 1888819 4603803 Sama_1551 Shewanella amazonensis SB2B AraC/XylS family transcriptional regulator YP_927428.1 1887992 R 326297 CDS YP_927429.1 119774689 4603804 1888929..1889759 1 NC_008700.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1889759 nadE 4603804 nadE Shewanella amazonensis SB2B NAD synthetase YP_927429.1 1888929 D 326297 CDS YP_927430.1 119774690 4603805 1889813..1891294 1 NC_008700.1 KEGG: sdn:Sden_1434 hypothetical protein; hypothetical protein 1891294 4603805 Sama_1553 Shewanella amazonensis SB2B hypothetical protein YP_927430.1 1889813 D 326297 CDS YP_927431.1 119774691 4603806 complement(1891393..1893582) 1 NC_008700.1 KEGG: sdn:Sden_1435 GGDEF domain protein; diguanylate cyclase 1893582 4603806 Sama_1554 Shewanella amazonensis SB2B diguanylate cyclase YP_927431.1 1891393 R 326297 CDS YP_927432.1 119774692 4605956 complement(1894991..1896775) 1 NC_008700.1 KEGG: son:SO2175 hypothetical protein; hypothetical protein 1896775 4605956 Sama_1555 Shewanella amazonensis SB2B hypothetical protein YP_927432.1 1894991 R 326297 CDS YP_927433.2 162139899 4603808 complement(1896852..1897070) 1 NC_008700.1 KEGG: sdn:Sden_2336 protein of unknown function DUF1414; hypothetical protein 1897070 4603808 Sama_1556 Shewanella amazonensis SB2B hypothetical protein YP_927433.2 1896852 R 326297 CDS YP_927434.1 119774694 4603809 1897148..1898176 1 NC_008700.1 KEGG: sdn:Sden_2335 37kDa nucleoid-associated protein; nucleoid-associated protein NdpA 1898176 4603809 Sama_1557 Shewanella amazonensis SB2B nucleoid-associated protein NdpA YP_927434.1 1897148 D 326297 CDS YP_927435.1 119774695 4603810 complement(1898352..1899065) 1 NC_008700.1 KEGG: hch:HCH_06888 hypothetical protein; hypothetical protein 1899065 4603810 Sama_1558 Shewanella amazonensis SB2B hypothetical protein YP_927435.1 1898352 R 326297 CDS YP_927436.1 119774696 4603811 1899349..1900233 1 NC_008700.1 KEGG: sdn:Sden_2379 hypothetical protein; hypothetical protein 1900233 4603811 Sama_1559 Shewanella amazonensis SB2B hypothetical protein YP_927436.1 1899349 D 326297 CDS YP_927437.1 119774697 4603812 1900268..1901116 1 NC_008700.1 KEGG: son:SO2180 peptidase, M23/M37 family; M24/M37 family peptidase 1901116 4603812 Sama_1560 Shewanella amazonensis SB2B M24/M37 family peptidase YP_927437.1 1900268 D 326297 CDS YP_927438.1 119774698 4603813 1901287..1901733 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 1901733 4603813 Sama_1561 Shewanella amazonensis SB2B IS1004 transposase YP_927438.1 1901287 D 326297 CDS YP_927439.1 119774699 4603814 complement(1902081..1902584) 1 NC_008700.1 KEGG: vfi:VF1328 ferrichrome-binding protein; ferrichrome-binding protein 1902584 4603814 Sama_1562 Shewanella amazonensis SB2B ferrichrome-binding protein YP_927439.1 1902081 R 326297 CDS YP_927440.1 119774700 4603815 complement(1903084..1905192) 1 NC_008700.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 1905192 cpdB 4603815 cpdB Shewanella amazonensis SB2B bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_927440.1 1903084 R 326297 CDS YP_927441.1 119774701 4603816 complement(1905406..1907598) 1 NC_008700.1 KEGG: sdn:Sden_1597 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 1907598 4603816 Sama_1564 Shewanella amazonensis SB2B peptidyl-dipeptidase Dcp YP_927441.1 1905406 R 326297 CDS YP_927442.1 119774702 4603817 1907877..1909454 1 NC_008700.1 KEGG: cps:CPS_1363 putative dipeptidase; hypothetical protein 1909454 4603817 Sama_1565 Shewanella amazonensis SB2B hypothetical protein YP_927442.1 1907877 D 326297 CDS YP_927443.1 119774703 4603818 complement(1909555..1911327) 1 NC_008700.1 KEGG: sdn:Sden_1655 gamma-glutamyltransferase; gamma-glutamyltransferase 1911327 4603818 Sama_1566 Shewanella amazonensis SB2B gamma-glutamyltransferase YP_927443.1 1909555 R 326297 CDS YP_927444.1 119774704 4603819 complement(1911454..1912074) 1 NC_008700.1 KEGG: son:SO1954 transporter, LysE family; amino acid transporter LysE 1912074 4603819 Sama_1567 Shewanella amazonensis SB2B amino acid transporter LysE YP_927444.1 1911454 R 326297 CDS YP_927445.1 119774705 4603820 complement(1912255..1913292) 1 NC_008700.1 KEGG: sdn:Sden_2163 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1913292 4603820 Sama_1568 Shewanella amazonensis SB2B 4-hydroxyphenylpyruvate dioxygenase YP_927445.1 1912255 R 326297 CDS YP_927446.1 119774706 4603821 complement(1913337..1914497) 1 NC_008700.1 KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 1914497 4603821 Sama_1569 Shewanella amazonensis SB2B homogentisate 1,2-dioxygenase YP_927446.1 1913337 R 326297 CDS YP_927447.1 119774707 4603822 1914689..1915603 1 NC_008700.1 KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 1915603 4603822 Sama_1570 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927447.1 1914689 D 326297 CDS YP_927448.1 119774708 4603823 1915710..1916504 1 NC_008700.1 KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein 1916504 4603823 Sama_1571 Shewanella amazonensis SB2B hypothetical protein YP_927448.1 1915710 D 326297 CDS YP_927449.1 119774709 4603824 complement(1916605..1916964) 1 NC_008700.1 KEGG: son:SO1968 hypothetical protein; hypothetical protein 1916964 4603824 Sama_1572 Shewanella amazonensis SB2B hypothetical protein YP_927449.1 1916605 R 326297 CDS YP_927450.1 119774710 4603825 complement(1916997..1917467) 1 NC_008700.1 KEGG: son:SO1969 hypothetical protein; hypothetical protein 1917467 4603825 Sama_1573 Shewanella amazonensis SB2B hypothetical protein YP_927450.1 1916997 R 326297 CDS YP_927451.1 119774711 4603826 1917664..1918443 1 NC_008700.1 KEGG: son:SO1973 hypothetical ABC transporter protein; ABC transporter 1918443 4603826 Sama_1574 Shewanella amazonensis SB2B ABC transporter YP_927451.1 1917664 D 326297 CDS YP_927452.1 119774712 4603827 complement(1918452..1918859) 1 NC_008700.1 KEGG: son:SO1977 hypothetical protein; hypothetical protein 1918859 4603827 Sama_1575 Shewanella amazonensis SB2B hypothetical protein YP_927452.1 1918452 R 326297 CDS YP_927453.1 119774713 4603828 1919094..1920017 1 NC_008700.1 KEGG: son:SO1978 hypothetical protein; hypothetical protein 1920017 4603828 Sama_1576 Shewanella amazonensis SB2B hypothetical protein YP_927453.1 1919094 D 326297 CDS YP_927454.1 119774714 4603829 complement(1920110..1920292) 1 NC_008700.1 KEGG: sdn:Sden_2145 hypothetical protein; hypothetical protein 1920292 4603829 Sama_1577 Shewanella amazonensis SB2B hypothetical protein YP_927454.1 1920110 R 326297 CDS YP_927455.1 119774715 4603830 1920653..1922257 1 NC_008700.1 KEGG: vvy:VVA1412 small-conductance mechanosensitive channel; small-conductance mechanosensitive channel 1922257 4603830 Sama_1578 Shewanella amazonensis SB2B small-conductance mechanosensitive channel YP_927455.1 1920653 D 326297 CDS YP_927456.1 119774716 4603831 complement(1922416..1925031) 1 NC_008700.1 KEGG: sdn:Sden_1716 mammalian cell entry related; virulence factor MCE-like protein related 1925031 4603831 Sama_1579 Shewanella amazonensis SB2B virulence factor MCE-like protein related YP_927456.1 1922416 R 326297 CDS YP_927457.1 119774717 4603832 complement(1925018..1925647) 1 NC_008700.1 KEGG: sdn:Sden_1717 paraquat-inducible protein A; paraquat-inducible protein A 1925647 4603832 Sama_1580 Shewanella amazonensis SB2B paraquat-inducible protein A YP_927457.1 1925018 R 326297 CDS YP_927458.1 119774718 4603833 complement(1925640..1926287) 1 NC_008700.1 KEGG: sdn:Sden_1718 paraquat-inducible protein A; paraquat-inducible protein A 1926287 4603833 Sama_1581 Shewanella amazonensis SB2B paraquat-inducible protein A YP_927458.1 1925640 R 326297 CDS YP_927459.1 119774719 4603834 1926443..1926730 1 NC_008700.1 KEGG: son:SO2604 hypothetical protein; hypothetical protein 1926730 4603834 Sama_1582 Shewanella amazonensis SB2B hypothetical protein YP_927459.1 1926443 D 326297 CDS YP_927460.1 119774720 4603835 1926749..1927210 1 NC_008700.1 KEGG: sdn:Sden_1720 GAF domain-containing protein; GAF domain-containing protein 1927210 4603835 Sama_1583 Shewanella amazonensis SB2B GAF domain-containing protein YP_927460.1 1926749 D 326297 CDS YP_927461.1 119774721 4603836 1927464..1928123 1 NC_008700.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 1928123 4603836 Sama_1584 Shewanella amazonensis SB2B putative solute/DNA competence effector YP_927461.1 1927464 D 326297 CDS YP_927462.1 119774722 4603837 1928153..1930198 1 NC_008700.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1930198 4603837 Sama_1585 Shewanella amazonensis SB2B carboxy-terminal protease YP_927462.1 1928153 D 326297 CDS YP_927463.1 119774723 4603838 1930307..1932865 1 NC_008700.1 KEGG: son:SO2600 aminopeptidase N; aminopeptidase N 1932865 pepN 4603838 pepN Shewanella amazonensis SB2B aminopeptidase N YP_927463.1 1930307 D 326297 CDS YP_927464.1 119774724 4603839 1932953..1933222 1 NC_008700.1 KEGG: son:SO2598 hypothetical protein; hypothetical protein 1933222 4603839 Sama_1587 Shewanella amazonensis SB2B hypothetical protein YP_927464.1 1932953 D 326297 CDS YP_927465.1 119774725 4603840 1933533..1935608 1 NC_008700.1 KEGG: son:SO2597 hypothetical protein; hypothetical protein 1935608 4603840 Sama_1588 Shewanella amazonensis SB2B hypothetical protein YP_927465.1 1933533 D 326297 CDS YP_927466.1 119774726 4603841 1935621..1936985 1 NC_008700.1 KEGG: son:SO2596 hypothetical protein; hypothetical protein 1936985 4603841 Sama_1589 Shewanella amazonensis SB2B hypothetical protein YP_927466.1 1935621 D 326297 CDS YP_927467.1 119774727 4603842 1937050..1938060 1 NC_008700.1 KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 1938060 4603842 Sama_1590 Shewanella amazonensis SB2B BNR repeat-containing protein YP_927467.1 1937050 D 326297 CDS YP_927468.1 119774728 4603843 1938098..1940404 1 NC_008700.1 KEGG: son:SO2594 hypothetical protein; hypothetical protein 1940404 4603843 Sama_1591 Shewanella amazonensis SB2B hypothetical protein YP_927468.1 1938098 D 326297 CDS YP_927469.1 119774729 4603844 1940681..1945522 1 NC_008700.1 KEGG: son:SO2593 hypothetical protein; hypothetical protein 1945522 4603844 Sama_1592 Shewanella amazonensis SB2B hypothetical protein YP_927469.1 1940681 D 326297 CDS YP_927470.1 119774730 4603845 1945662..1946681 1 NC_008700.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1946681 4603845 Sama_1593 Shewanella amazonensis SB2B dihydroorotate dehydrogenase 2 YP_927470.1 1945662 D 326297 CDS YP_927471.1 119774731 4603846 1946862..1947395 1 NC_008700.1 KEGG: son:SO2591 hypothetical protein; hypothetical protein 1947395 4603846 Sama_1594 Shewanella amazonensis SB2B hypothetical protein YP_927471.1 1946862 D 326297 CDS YP_927472.1 119774732 4603847 1947572..1947811 1 NC_008700.1 KEGG: sdn:Sden_0276 hypothetical protein; hypothetical protein 1947811 4603847 Sama_1595 Shewanella amazonensis SB2B hypothetical protein YP_927472.1 1947572 D 326297 CDS YP_927473.1 119774733 4603848 1947839..1948735 1 NC_008700.1 KEGG: son:SO2518 hypothetical protein; hypothetical protein 1948735 4603848 Sama_1596 Shewanella amazonensis SB2B hypothetical protein YP_927473.1 1947839 D 326297 CDS YP_927474.1 119774734 4603849 1948886..1952014 1 NC_008700.1 KEGG: vvy:VV1099 transglutaminase-like enzyme; hypothetical protein 1952014 4603849 Sama_1597 Shewanella amazonensis SB2B hypothetical protein YP_927474.1 1948886 D 326297 CDS YP_927475.1 119774735 4603850 1952011..1952700 1 NC_008700.1 KEGG: vpa:VP2146 putative oxidoreductase protein; putative oxidoreductase protein 1952700 4603850 Sama_1598 Shewanella amazonensis SB2B putative oxidoreductase protein YP_927475.1 1952011 D 326297 CDS YP_927476.1 119774736 4603851 1952808..1953380 1 NC_008700.1 KEGG: pat:Patl_0406 hypothetical protein; hypothetical protein 1953380 4603851 Sama_1599 Shewanella amazonensis SB2B hypothetical protein YP_927476.1 1952808 D 326297 CDS YP_927477.1 119774737 4605959 1954713..1956839 1 NC_008700.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1956839 rlmL 4605959 rlmL Shewanella amazonensis SB2B 23S rRNA m(2)G2445 methyltransferase YP_927477.1 1954713 D 326297 CDS YP_927478.1 119774738 4603853 1956832..1957059 1 NC_008700.1 KEGG: son:SO1852 hypothetical protein; hypothetical protein 1957059 4603853 Sama_1601 Shewanella amazonensis SB2B hypothetical protein YP_927478.1 1956832 D 326297 CDS YP_927479.1 119774739 4603854 1957061..1958977 1 NC_008700.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1958977 4603854 Sama_1602 Shewanella amazonensis SB2B ABC transporter ATPase YP_927479.1 1957061 D 326297 CDS YP_927480.1 119774740 4603855 1959005..1960882 1 NC_008700.1 KEGG: son:SO1854 hypothetical protein; hypothetical protein 1960882 4603855 Sama_1603 Shewanella amazonensis SB2B hypothetical protein YP_927480.1 1959005 D 326297 CDS YP_927481.1 119774741 4603856 1961055..1961231 1 NC_008700.1 KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor 1961231 4603856 Sama_1604 Shewanella amazonensis SB2B ribosome modulation factor YP_927481.1 1961055 D 326297 CDS YP_927482.1 119774742 4603857 complement(1961420..1961935) 1 NC_008700.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1961935 4603857 Sama_1605 Shewanella amazonensis SB2B 3-hydroxydecanoyl-ACP dehydratase YP_927482.1 1961420 R 326297 CDS YP_927483.1 119774743 4603858 complement(1962014..1963744) 1 NC_008700.1 KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease 1963744 4603858 Sama_1606 Shewanella amazonensis SB2B ATP-dependent protease YP_927483.1 1962014 R 326297 CDS YP_927484.1 119774744 4605961 1964790..1965434 1 NC_008700.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1965434 4605961 Sama_1607 Shewanella amazonensis SB2B response regulator YP_927484.1 1964790 D 326297 CDS YP_927485.1 119774745 4603860 1965437..1967257 1 NC_008700.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1967257 uvrC 4603860 uvrC Shewanella amazonensis SB2B excinuclease ABC subunit C YP_927485.1 1965437 D 326297 CDS YP_927486.1 119774746 4603861 1967306..1967854 1 NC_008700.1 KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1967854 4603861 Sama_1609 Shewanella amazonensis SB2B CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_927486.1 1967306 D 326297 CDS YP_927487.1 119774747 4605964 1968633..1969796 1 NC_008700.1 KEGG: noc:Noc_0649 DNA topoisomerase I; hypothetical protein 1969796 4605964 Sama_1610 Shewanella amazonensis SB2B hypothetical protein YP_927487.1 1968633 D 326297 CDS YP_927488.1 119774748 4603863 complement(1969782..1970057) 1 NC_008700.1 KEGG: son:SO1863 DNA-binding protein, HU family; HU family DNA-binding protein 1970057 4603863 Sama_1611 Shewanella amazonensis SB2B HU family DNA-binding protein YP_927488.1 1969782 R 326297 CDS YP_927489.1 119774749 4603864 1970262..1971680 1 NC_008700.1 KEGG: sdn:Sden_1501 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1971680 4603864 Sama_1612 Shewanella amazonensis SB2B peptidoglycan binding domain-containing protein YP_927489.1 1970262 D 326297 CDS YP_927490.1 119774750 4603865 1971884..1972375 1 NC_008700.1 KEGG: son:SO2110 hypothetical protein; hypothetical protein 1972375 4603865 Sama_1613 Shewanella amazonensis SB2B hypothetical protein YP_927490.1 1971884 D 326297 CDS YP_927491.1 119774751 4603866 1973022..1973309 1 NC_008700.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1973309 4603866 Sama_1614 Shewanella amazonensis SB2B 50S ribosomal protein L25 YP_927491.1 1973022 D 326297 CDS YP_927492.1 119774752 4603867 complement(1973505..1977398) 1 NC_008700.1 KEGG: son:SO2113 hypothetical protein; hypothetical protein 1977398 4603867 Sama_1615 Shewanella amazonensis SB2B hypothetical protein YP_927492.1 1973505 R 326297 CDS YP_927493.1 119774753 4603868 complement(1977395..1979233) 1 NC_008700.1 KEGG: son:SO2114 hypothetical protein; hypothetical protein 1979233 4603868 Sama_1616 Shewanella amazonensis SB2B hypothetical protein YP_927493.1 1977395 R 326297 CDS YP_927494.1 119774754 4603869 1979427..1980410 1 NC_008700.1 KEGG: son:SO2115 asparaginase family protein; asparaginase family protein 1980410 4603869 Sama_1617 Shewanella amazonensis SB2B asparaginase family protein YP_927494.1 1979427 D 326297 CDS YP_927495.1 119774755 4603870 1980496..1980912 1 NC_008700.1 KEGG: son:SO2228 CBS domain protein; hypothetical protein 1980912 4603870 Sama_1618 Shewanella amazonensis SB2B hypothetical protein YP_927495.1 1980496 D 326297 CDS YP_927496.1 119774756 4603871 1981026..1984895 1 NC_008700.1 KEGG: son:SO2229 ATP-dependent helicase HrpA; ATP-dependent helicase HrpA 1984895 4603871 Sama_1619 Shewanella amazonensis SB2B ATP-dependent helicase HrpA YP_927496.1 1981026 D 326297 CDS YP_927497.1 119774757 4603872 1985317..1985502 1 NC_008700.1 KEGG: sdn:Sden_1495 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 1985502 4603872 Sama_1620 Shewanella amazonensis SB2B periplasmic nitrate reductase NapE YP_927497.1 1985317 D 326297 CDS YP_927498.1 119774758 4603873 1985600..1985803 1 NC_008700.1 KEGG: sdn:Sden_1496 NapD; NapD protein 1985803 4603873 Sama_1621 Shewanella amazonensis SB2B NapD protein YP_927498.1 1985600 D 326297 CDS YP_927499.1 119774759 4603874 1985800..1988295 1 NC_008700.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1988295 4603874 Sama_1622 Shewanella amazonensis SB2B nitrate reductase catalytic subunit YP_927499.1 1985800 D 326297 CDS YP_927500.1 119774760 4603875 1988307..1988780 1 NC_008700.1 KEGG: sdn:Sden_1498 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 1988780 4603875 Sama_1623 Shewanella amazonensis SB2B nitrate reductase cytochrome c-type subunit YP_927500.1 1988307 D 326297 CDS YP_927501.1 119774761 4603876 1988789..1989376 1 NC_008700.1 KEGG: sdn:Sden_1499 periplasmic nitrate reductase C-type cytochrome, NapC/NirT; periplasmic nitrate reductase C-type cytochrome, NapC/NirT 1989376 4603876 Sama_1624 Shewanella amazonensis SB2B periplasmic nitrate reductase C-type cytochrome, NapC/NirT YP_927501.1 1988789 D 326297 CDS YP_927502.1 119774762 4603877 complement(1989511..1990314) 1 NC_008700.1 KEGG: sdn:Sden_1057 hypothetical protein; hypothetical protein 1990314 4603877 Sama_1625 Shewanella amazonensis SB2B hypothetical protein YP_927502.1 1989511 R 326297 CDS YP_927503.1 119774763 4603878 complement(1990345..1991832) 1 NC_008700.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1991832 astD 4603878 astD Shewanella amazonensis SB2B succinylglutamic semialdehyde dehydrogenase YP_927503.1 1990345 R 326297 CDS YP_927504.2 229220633 4603879 complement(1991829..1992875) 1 NC_008700.1 KEGG: sdn:Sden_1055 arginine N-succinyltransferase; arginine N-succinyltransferase 1992875 4603879 Sama_1627 Shewanella amazonensis SB2B arginine N-succinyltransferase YP_927504.2 1991829 R 326297 CDS YP_927505.1 119774765 4603880 complement(1992953..1994170) 1 NC_008700.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1994170 argD 4603880 argD Shewanella amazonensis SB2B bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_927505.1 1992953 R 326297 CDS YP_927506.1 119774766 4603881 1994324..1994752 1 NC_008700.1 KEGG: sdn:Sden_1053 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1994752 4603881 Sama_1629 Shewanella amazonensis SB2B AsnC family transcriptional regulator YP_927506.1 1994324 D 326297 CDS YP_927507.1 119774767 4603882 complement(1994829..1995719) 1 NC_008700.1 KEGG: psp:PSPPH_4620 transcriptional regulator, LysR family; LysR family transcriptional regulator 1995719 4603882 Sama_1630 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927507.1 1994829 R 326297 CDS YP_927508.1 119774768 4603883 1995924..1997417 1 NC_008700.1 KEGG: sru:SRU_0722 histidine ammonia-lyase; histidine ammonia-lyase 1997417 4603883 Sama_1631 Shewanella amazonensis SB2B histidine ammonia-lyase YP_927508.1 1995924 D 326297 CDS YP_927509.1 119774769 4603884 1997435..1999447 1 NC_008700.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1999447 4603884 Sama_1632 Shewanella amazonensis SB2B urocanate hydratase YP_927509.1 1997435 D 326297 CDS YP_927510.1 119774770 4603885 complement(1999827..2000741) 1 NC_008700.1 KEGG: son:SO2037 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase 2000741 4603885 Sama_1633 Shewanella amazonensis SB2B phage integrase family site specific recombinase YP_927510.1 1999827 R 326297 CDS YP_927511.1 119774771 4603886 2001144..2001548 1 NC_008700.1 hypothetical protein 2001548 4603886 Sama_1634 Shewanella amazonensis SB2B hypothetical protein YP_927511.1 2001144 D 326297 CDS YP_927512.1 119774772 4603887 2002334..2003623 1 NC_008700.1 hypothetical protein 2003623 4603887 Sama_1635 Shewanella amazonensis SB2B hypothetical protein YP_927512.1 2002334 D 326297 CDS YP_927513.1 119774773 4606038 2004252..2004674 1 NC_008700.1 KEGG: cps:CPS_4885 acetyltransferase, GNAT family; acetyltransferase 2004674 4606038 Sama_1637 Shewanella amazonensis SB2B acetyltransferase YP_927513.1 2004252 D 326297 CDS YP_927514.1 119774774 4603889 complement(2004831..2005097) 1 NC_008700.1 KEGG: sdn:Sden_2135 hypothetical protein; hypothetical protein 2005097 4603889 Sama_1638 Shewanella amazonensis SB2B hypothetical protein YP_927514.1 2004831 R 326297 CDS YP_927515.1 119774775 4603890 complement(2005097..2005834) 1 NC_008700.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2005834 4603890 Sama_1639 Shewanella amazonensis SB2B 3-deoxy-manno-octulosonate cytidylyltransferase YP_927515.1 2005097 R 326297 CDS YP_927516.1 119774776 4603891 complement(2005890..2006960) 1 NC_008700.1 KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2006960 4603891 Sama_1640 Shewanella amazonensis SB2B iron-containing alcohol dehydrogenase YP_927516.1 2005890 R 326297 CDS YP_927517.1 119774777 4603892 complement(2006980..2008167) 1 NC_008700.1 KEGG: son:SO2476 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2008167 4603892 Sama_1641 Shewanella amazonensis SB2B polysaccharide biosynthesis protein YP_927517.1 2006980 R 326297 CDS YP_927518.1 119774778 4603893 complement(2008318..2008929) 1 NC_008700.1 KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase 2008929 4603893 Sama_1642 Shewanella amazonensis SB2B carbonate dehydratase YP_927518.1 2008318 R 326297 CDS YP_927519.1 119774779 4603894 complement(2009088..2009501) 1 NC_008700.1 KEGG: sde:Sde_0340 hypothetical protein; hypothetical protein 2009501 4603894 Sama_1643 Shewanella amazonensis SB2B hypothetical protein YP_927519.1 2009088 R 326297 CDS YP_927520.1 119774780 4603895 complement(2009514..2010695) 1 NC_008700.1 KEGG: sde:Sde_0341 gram negative topoisomerase IV, subunit B; topoisomerase IV subunit B 2010695 4603895 Sama_1644 Shewanella amazonensis SB2B topoisomerase IV subunit B YP_927520.1 2009514 R 326297 CDS YP_927521.1 119774781 4603896 complement(2010833..2011660) 1 NC_008700.1 KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2011660 4603896 Sama_1645 Shewanella amazonensis SB2B alpha/beta hydrolase fold domain-containing protein YP_927521.1 2010833 R 326297 CDS YP_927522.1 119774782 4603897 complement(2011653..2012291) 1 NC_008700.1 KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; D-alanyl-D-alanine carboxypeptidase 2012291 4603897 Sama_1646 Shewanella amazonensis SB2B D-alanyl-D-alanine carboxypeptidase YP_927522.1 2011653 R 326297 CDS YP_927523.1 119774783 4603898 complement(2012345..2013493) 1 NC_008700.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2013493 4603898 Sama_1647 Shewanella amazonensis SB2B succinyl-diaminopimelate desuccinylase YP_927523.1 2012345 R 326297 CDS YP_927524.1 119774784 4603899 complement(2013490..2013834) 1 NC_008700.1 KEGG: sdn:Sden_1815 hypothetical protein; hypothetical protein 2013834 4603899 Sama_1648 Shewanella amazonensis SB2B hypothetical protein YP_927524.1 2013490 R 326297 CDS YP_927525.1 119774785 4603900 complement(2013924..2014433) 1 NC_008700.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2014433 4603900 Sama_1649 Shewanella amazonensis SB2B PTS system glucose-specific transporter YP_927525.1 2013924 R 326297 CDS YP_927526.1 119774786 4603901 complement(2014505..2016208) 1 NC_008700.1 KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphotransferase system, enzyme I 2016208 4603901 Sama_1650 Shewanella amazonensis SB2B phosphotransferase system, enzyme I YP_927526.1 2014505 R 326297 CDS YP_927527.1 119774787 4603902 complement(2016223..2016480) 1 NC_008700.1 KEGG: son:SO2238 phosphocarrier protein HPr; phosphocarrier protein HPr 2016480 4603902 Sama_1651 Shewanella amazonensis SB2B phosphocarrier protein HPr YP_927527.1 2016223 R 326297 CDS YP_927528.1 119774788 4603903 complement(2016545..2016943) 1 NC_008700.1 KEGG: son:SO2239 hypothetical protein; hypothetical protein 2016943 4603903 Sama_1652 Shewanella amazonensis SB2B hypothetical protein YP_927528.1 2016545 R 326297 CDS YP_927529.1 119774789 4603904 complement(2017088..2018704) 1 NC_008700.1 KEGG: son:SO2240 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2018704 4603904 Sama_1653 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_927529.1 2017088 R 326297 CDS YP_927530.1 119774790 4603905 2019007..2019693 1 NC_008700.1 KEGG: son:SO2241 hypothetical protein; hypothetical protein 2019693 4603905 Sama_1654 Shewanella amazonensis SB2B hypothetical protein YP_927530.1 2019007 D 326297 CDS YP_927531.1 119774791 4603906 2019731..2020831 1 NC_008700.1 KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcriptional regulator 2020831 4603906 Sama_1655 Shewanella amazonensis SB2B LacI family transcriptional regulator YP_927531.1 2019731 D 326297 CDS YP_927532.1 119774792 4603907 complement(2021005..2023458) 1 NC_008700.1 KEGG: son:SO2459 glucoamylase; glucan 1,4-alpha-glucosidase 2023458 4603907 Sama_1656 Shewanella amazonensis SB2B glucan 1,4-alpha-glucosidase YP_927532.1 2021005 R 326297 CDS YP_927533.1 119774793 4603908 complement(2023478..2025034) 1 NC_008700.1 KEGG: she:Shewmr4_1870 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2025034 4603908 Sama_1657 Shewanella amazonensis SB2B major facilitator superfamily transporter YP_927533.1 2023478 R 326297 CDS YP_927534.1 119774794 4603909 2025446..2026105 1 NC_008700.1 KEGG: pat:Patl_2431 negative transcriptional regulator; negative transcriptional regulator 2026105 4603909 Sama_1658 Shewanella amazonensis SB2B negative transcriptional regulator YP_927534.1 2025446 D 326297 CDS YP_927535.1 119774795 4603910 complement(2026284..2028164) 1 NC_008700.1 KEGG: pha:PSHAa1355 glycosidase; glycosidase 2028164 4603910 Sama_1659 Shewanella amazonensis SB2B glycosidase YP_927535.1 2026284 R 326297 CDS YP_927536.1 119774796 4603911 complement(2028170..2030221) 1 NC_008700.1 KEGG: sdn:Sden_2031 alpha amylase, catalytic region; alpha amylase 2030221 4603911 Sama_1660 Shewanella amazonensis SB2B alpha amylase YP_927536.1 2028170 R 326297 CDS YP_927537.1 119774797 4603912 complement(2030305..2033127) 1 NC_008700.1 KEGG: son:SO2162 TonB dependent receptor-related protein; TonB dependent receptor-like protein 2033127 4603912 Sama_1661 Shewanella amazonensis SB2B TonB dependent receptor-like protein YP_927537.1 2030305 R 326297 CDS YP_927538.1 119774798 4603913 2033633..2035267 1 NC_008700.1 KEGG: sdn:Sden_2028 alpha amylase, catalytic region; alpha amylase 2035267 4603913 Sama_1662 Shewanella amazonensis SB2B alpha amylase YP_927538.1 2033633 D 326297 CDS YP_927539.1 119774799 4603914 2035563..2036810 1 NC_008700.1 KEGG: sdn:Sden_2027 glucose/galactose transporter; glucose/galactose transporter 2036810 4603914 Sama_1663 Shewanella amazonensis SB2B glucose/galactose transporter YP_927539.1 2035563 D 326297 CDS YP_927540.1 119774800 4603915 2037123..2038373 1 NC_008700.1 KEGG: vvy:VVA1664 tRNA and rRNA cytosine-C5-methylase; tRNA and rRNA cytosine-C5-methylase 2038373 4603915 Sama_1664 Shewanella amazonensis SB2B tRNA and rRNA cytosine-C5-methylase YP_927540.1 2037123 D 326297 CDS YP_927541.1 119774801 4603916 complement(2038527..2038946) 1 NC_008700.1 KEGG: vvu:VV11395 hypothetical protein; hypothetical protein 2038946 4603916 Sama_1665 Shewanella amazonensis SB2B hypothetical protein YP_927541.1 2038527 R 326297 CDS YP_927542.1 119774802 4603917 2039062..2039340 1 NC_008700.1 KEGG: sde:Sde_2637 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 2039340 4603917 Sama_1666 Shewanella amazonensis SB2B cell wall hydrolase/autolysin YP_927542.1 2039062 D 326297 CDS YP_927543.1 119774803 4603918 2039343..2041145 1 NC_008700.1 KEGG: vpa:VPA0700 hypothetical protein; hypothetical protein 2041145 4603918 Sama_1667 Shewanella amazonensis SB2B hypothetical protein YP_927543.1 2039343 D 326297 CDS YP_927544.1 119774804 4603919 complement(2041211..2042281) 1 NC_008700.1 KEGG: vvy:VV2684 GGDEF family protein; diguanylate cyclase 2042281 4603919 Sama_1668 Shewanella amazonensis SB2B diguanylate cyclase YP_927544.1 2041211 R 326297 CDS YP_927545.1 119774805 4603920 complement(2042513..2042878) 1 NC_008700.1 KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase expression/formation protein HypA 2042878 4603920 Sama_1669 Shewanella amazonensis SB2B hydrogenase expression/formation protein HypA YP_927545.1 2042513 R 326297 CDS YP_927546.1 119774806 4603921 complement(2042878..2043882) 1 NC_008700.1 KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2043882 4603921 Sama_1670 Shewanella amazonensis SB2B hydrogenase expression/formation protein HypE YP_927546.1 2042878 R 326297 CDS YP_927547.1 119774807 4603922 complement(2043872..2045032) 1 NC_008700.1 KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2045032 4603922 Sama_1671 Shewanella amazonensis SB2B hydrogenase expression/formation protein HypD YP_927547.1 2043872 R 326297 CDS YP_927548.1 119774808 4603923 complement(2045010..2045270) 1 NC_008700.1 KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2045270 4603923 Sama_1672 Shewanella amazonensis SB2B hydrogenase assembly chaperone HypC/HupF YP_927548.1 2045010 R 326297 CDS YP_927549.1 119774809 4603924 complement(2045274..2046050) 1 NC_008700.1 KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2046050 4603924 Sama_1673 Shewanella amazonensis SB2B hydrogenase nickel incorporation protein HypB YP_927549.1 2045274 R 326297 CDS YP_927550.1 119774810 4603925 complement(2046154..2048469) 1 NC_008700.1 KEGG: son:SO2094 hydrogenase maturation protein HypF; hydrogenase maturation protein HypF 2048469 4603925 Sama_1674 Shewanella amazonensis SB2B hydrogenase maturation protein HypF YP_927550.1 2046154 R 326297 CDS YP_927551.1 119774811 4603926 complement(2048499..2050307) 1 NC_008700.1 KEGG: son:SO2095 hypothetical protein; hypothetical protein 2050307 4603926 Sama_1675 Shewanella amazonensis SB2B hypothetical protein YP_927551.1 2048499 R 326297 CDS YP_927552.1 119774812 4603927 complement(2050294..2050851) 1 NC_008700.1 KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2050851 4603927 Sama_1676 Shewanella amazonensis SB2B hydrogenase expression/formation protein YP_927552.1 2050294 R 326297 CDS YP_927553.1 119774813 4603928 complement(2051003..2051719) 1 NC_008700.1 KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; quinone-reactive Ni/Fe hydrogenase, cytochrome subunit B 2051719 4603928 Sama_1677 Shewanella amazonensis SB2B quinone-reactive Ni/Fe hydrogenase, cytochrome subunit B YP_927553.1 2051003 R 326297 CDS YP_927554.1 119774814 4603929 complement(2051729..2053432) 1 NC_008700.1 KEGG: son:SO2098 hydrogenase large chain; hydrogenase large chain 2053432 4603929 Sama_1678 Shewanella amazonensis SB2B hydrogenase large chain YP_927554.1 2051729 R 326297 CDS YP_927555.1 119774815 4603930 complement(2053436..2054572) 1 NC_008700.1 KEGG: son:SO2099 hydrogenase small chain; hydrogen:quinone oxidoreductase 2054572 4603930 Sama_1679 Shewanella amazonensis SB2B hydrogen:quinone oxidoreductase YP_927555.1 2053436 R 326297 CDS YP_927556.1 119774816 4603931 2054905..2055426 1 NC_008700.1 KEGG: son:SO2100 thioredoxin family protein; thioredoxin family protein 2055426 4603931 Sama_1680 Shewanella amazonensis SB2B thioredoxin family protein YP_927556.1 2054905 D 326297 CDS YP_927557.1 119774817 4603932 2055423..2055644 1 NC_008700.1 KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 2055644 4603932 Sama_1681 Shewanella amazonensis SB2B putative lipoprotein YP_927557.1 2055423 D 326297 CDS YP_927558.1 119774818 4603933 2055635..2057056 1 NC_008700.1 KEGG: son:SO2102 hypothetical protein; hypothetical protein 2057056 4603933 Sama_1682 Shewanella amazonensis SB2B hypothetical protein YP_927558.1 2055635 D 326297 CDS YP_927559.1 119774819 4603934 2057082..2057996 1 NC_008700.1 KEGG: she:Shewmr4_1826 ApbE family lipoprotein; ApbE family lipoprotein 2057996 4603934 Sama_1683 Shewanella amazonensis SB2B ApbE family lipoprotein YP_927559.1 2057082 D 326297 CDS YP_927560.1 119774820 4603935 complement(2058084..2059484) 1 NC_008700.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2059484 asnC 4603935 asnC Shewanella amazonensis SB2B asparaginyl-tRNA synthetase YP_927560.1 2058084 R 326297 CDS YP_927561.1 119774821 4603936 2059635..2059970 1 NC_008700.1 KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein 2059970 4603936 Sama_1685 Shewanella amazonensis SB2B hypothetical protein YP_927561.1 2059635 D 326297 CDS YP_927562.1 119774822 4603937 complement(2060046..2060654) 1 NC_008700.1 KEGG: son:SO2220 MutT/nudix family protein; MutT/nudix family protein 2060654 4603937 Sama_1686 Shewanella amazonensis SB2B MutT/nudix family protein YP_927562.1 2060046 R 326297 CDS YP_927563.1 119774823 4603938 complement(2060661..2062076) 1 NC_008700.1 KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase, component I 2062076 4603938 Sama_1687 Shewanella amazonensis SB2B para-aminobenzoate synthase, component I YP_927563.1 2060661 R 326297 CDS YP_927564.1 119774824 4603939 2062237..2063772 1 NC_008700.1 KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; fumarate hydratase, class I, anaerobic 2063772 4603939 Sama_1688 Shewanella amazonensis SB2B fumarate hydratase, class I, anaerobic YP_927564.1 2062237 D 326297 CDS YP_927565.1 119774825 4603940 2063943..2065997 1 NC_008700.1 KEGG: son:SO2223 peptidase, putative; peptidase 2065997 4603940 Sama_1689 Shewanella amazonensis SB2B peptidase YP_927565.1 2063943 D 326297 CDS YP_927566.1 119774826 4603941 2066090..2066767 1 NC_008700.1 KEGG: pat:Patl_1146 hypothetical protein; hypothetical protein 2066767 4603941 Sama_1690 Shewanella amazonensis SB2B hypothetical protein YP_927566.1 2066090 D 326297 CDS YP_927567.1 119774827 4603942 2067034..2068656 1 NC_008700.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2068656 mdoG 4603942 mdoG Shewanella amazonensis SB2B glucan biosynthesis protein G YP_927567.1 2067034 D 326297 CDS YP_927568.1 119774828 4603943 2068718..2070841 1 NC_008700.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2070841 4603943 Sama_1692 Shewanella amazonensis SB2B glucosyltransferase MdoH YP_927568.1 2068718 D 326297 CDS YP_927569.1 119774829 4603944 complement(2070919..2073522) 1 NC_008700.1 KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2073522 4603944 Sama_1693 Shewanella amazonensis SB2B bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_927569.1 2070919 R 326297 CDS YP_927570.1 119774830 4603945 2073858..2074490 1 NC_008700.1 KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2074490 4603945 Sama_1694 Shewanella amazonensis SB2B hypothetical protein YP_927570.1 2073858 D 326297 CDS YP_927571.1 119774831 4603946 complement(2074604..2075935) 1 NC_008700.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2075935 4603946 Sama_1695 Shewanella amazonensis SB2B deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_927571.1 2074604 R 326297 CDS YP_927572.1 119774832 4603947 complement(2075945..2076532) 1 NC_008700.1 KEGG: son:SO2484 hypothetical protein; hypothetical protein 2076532 4603947 Sama_1696 Shewanella amazonensis SB2B hypothetical protein YP_927572.1 2075945 R 326297 CDS YP_927573.1 119774833 4603948 complement(2076712..2077926) 1 NC_008700.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2077926 4603948 Sama_1697 Shewanella amazonensis SB2B aminotransferase AlaT YP_927573.1 2076712 R 326297 CDS YP_927574.1 119774834 4603949 2078569..2079951 1 NC_008700.1 KEGG: son:SO2481 hypothetical protein; hypothetical protein 2079951 4603949 Sama_1698 Shewanella amazonensis SB2B hypothetical protein YP_927574.1 2078569 D 326297 CDS YP_927575.1 119774835 4603950 complement(2080349..2080915) 1 NC_008700.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2080915 4603950 Sama_1699 Shewanella amazonensis SB2B elongation factor P YP_927575.1 2080349 R 326297 CDS YP_927576.1 119774836 4603951 complement(2080955..2082121) 1 NC_008700.1 KEGG: son:SO2329 hypothetical protein; hypothetical protein 2082121 4603951 Sama_1700 Shewanella amazonensis SB2B hypothetical protein YP_927576.1 2080955 R 326297 CDS YP_927577.1 119774837 4603952 complement(2082200..2082727) 1 NC_008700.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2082727 4603952 Sama_1701 Shewanella amazonensis SB2B flavodoxin FldA YP_927577.1 2082200 R 326297 CDS YP_927578.1 119774838 4603953 complement(2082781..2083053) 1 NC_008700.1 KEGG: son:SO2331 hypothetical protein; LexA regulated protein 2083053 4603953 Sama_1702 Shewanella amazonensis SB2B LexA regulated protein YP_927578.1 2082781 R 326297 CDS YP_927579.1 119774839 4603954 complement(2083061..2083282) 1 NC_008700.1 KEGG: son:SO2332 hypothetical protein; hypothetical protein 2083282 4603954 Sama_1703 Shewanella amazonensis SB2B hypothetical protein YP_927579.1 2083061 R 326297 CDS YP_927580.1 119774840 4603955 complement(2083379..2084167) 1 NC_008700.1 KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 2084167 4603955 Sama_1704 Shewanella amazonensis SB2B alpha/beta fold family hydrolase YP_927580.1 2083379 R 326297 CDS YP_927581.1 119774841 4603956 2084434..2085009 1 NC_008700.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2085009 4603956 Sama_1705 Shewanella amazonensis SB2B replication initiation regulator SeqA YP_927581.1 2084434 D 326297 CDS YP_927582.1 119774842 4603957 2085048..2086730 1 NC_008700.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2086730 4603957 Sama_1706 Shewanella amazonensis SB2B phosphoglucomutase YP_927582.1 2085048 D 326297 CDS YP_927583.1 119774843 4603958 complement(2086791..2087285) 1 NC_008700.1 KEGG: son:SO2337 peptide methionine sulfoxide reductase; protein-methionine-S-oxide reductase 2087285 4603958 Sama_1707 Shewanella amazonensis SB2B protein-methionine-S-oxide reductase YP_927583.1 2086791 R 326297 CDS YP_927584.1 119774844 4603959 2087535..2088581 1 NC_008700.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2088581 4603959 Sama_1708 Shewanella amazonensis SB2B succinylglutamate desuccinylase YP_927584.1 2087535 D 326297 CDS YP_927585.1 119774845 4603960 2088734..2089912 1 NC_008700.1 KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2089912 4603960 Sama_1709 Shewanella amazonensis SB2B 3-methyl-2-oxobutanoate dehydrogenase YP_927585.1 2088734 D 326297 CDS YP_927586.1 119774846 4603961 2089916..2090893 1 NC_008700.1 KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; alpha keto acid dehydrogenase complex, E1 component subunit beta 2090893 4603961 Sama_1710 Shewanella amazonensis SB2B alpha keto acid dehydrogenase complex, E1 component subunit beta YP_927586.1 2089916 D 326297 CDS YP_927587.1 119774847 4603962 2090903..2092486 1 NC_008700.1 KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase 2092486 4603962 Sama_1711 Shewanella amazonensis SB2B dihydrolipoamide acetyltransferase YP_927587.1 2090903 D 326297 CDS YP_927588.1 119774848 4603963 2092642..2093709 1 NC_008700.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2093709 4603963 Sama_1712 Shewanella amazonensis SB2B quinolinate synthetase YP_927588.1 2092642 D 326297 CDS YP_927589.1 119774849 4603964 2093877..2095877 1 NC_008700.1 KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2095877 4603964 Sama_1713 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_927589.1 2093877 D 326297 CDS YP_927590.1 119774850 4606039 2097037..2098110 1 NC_008700.1 KEGG: vfi:VFA0358 acriflavin resistance periplasmic protein; acriflavin resistance periplasmic protein 2098110 4606039 Sama_1715 Shewanella amazonensis SB2B acriflavin resistance periplasmic protein YP_927590.1 2097037 D 326297 CDS YP_927591.1 119774851 4603966 2098110..2101154 1 NC_008700.1 KEGG: vvy:VVA0535 transporter, AcrB/D/F family; AcrB/AcrD/AcrF family transporter 2101154 4603966 Sama_1716 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family transporter YP_927591.1 2098110 D 326297 CDS YP_927592.1 119774852 4603967 2101773..2103560 1 NC_008700.1 KEGG: son:SO2570 lipoprotein, putative; putative lipoprotein 2103560 4603967 Sama_1717 Shewanella amazonensis SB2B putative lipoprotein YP_927592.1 2101773 D 326297 CDS YP_927593.1 119774853 4603968 2103739..2104413 1 NC_008700.1 KEGG: son:SO2426 DNA-binding response regulator; response regulator receiver protein 2104413 4603968 Sama_1718 Shewanella amazonensis SB2B response regulator receiver protein YP_927593.1 2103739 D 326297 CDS YP_927594.1 119774854 4603969 2104525..2105652 1 NC_008700.1 KEGG: son:SO2424 zinc carboxypeptidase domain protein; zinc carboxypeptidase domain-containing protein 2105652 4603969 Sama_1719 Shewanella amazonensis SB2B zinc carboxypeptidase domain-containing protein YP_927594.1 2104525 D 326297 CDS YP_927595.1 119774855 4603970 2105658..2105975 1 NC_008700.1 KEGG: son:SO2423 hypothetical protein; hypothetical protein 2105975 4603970 Sama_1720 Shewanella amazonensis SB2B hypothetical protein YP_927595.1 2105658 D 326297 CDS YP_927596.1 119774856 4603971 2105972..2106265 1 NC_008700.1 KEGG: son:SO2422 hypothetical protein; hypothetical protein 2106265 4603971 Sama_1721 Shewanella amazonensis SB2B hypothetical protein YP_927596.1 2105972 D 326297 CDS YP_927597.1 119774857 4603972 complement(2106320..2107333) 1 NC_008700.1 converts asparagine to aspartate and ammonia; asparaginase 2107333 ansA 4603972 ansA Shewanella amazonensis SB2B asparaginase YP_927597.1 2106320 R 326297 CDS YP_927598.1 119774858 4603973 complement(2107498..2109351) 1 NC_008700.1 KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2109351 4603973 Sama_1723 Shewanella amazonensis SB2B signal peptide peptidase SppA, 67K type YP_927598.1 2107498 R 326297 CDS YP_927599.1 119774859 4603974 2109514..2111529 1 NC_008700.1 KEGG: sdn:Sden_1900 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2111529 4603974 Sama_1724 Shewanella amazonensis SB2B NADH:flavin oxidoreductase YP_927599.1 2109514 D 326297 CDS YP_927600.1 119774860 4603975 2111730..2112254 1 NC_008700.1 KEGG: mxa:MXAN_5255 hypothetical protein; hypothetical protein 2112254 4603975 Sama_1725 Shewanella amazonensis SB2B hypothetical protein YP_927600.1 2111730 D 326297 CDS YP_927601.1 119774861 4603976 complement(2112256..2112609) 1 NC_008700.1 KEGG: son:SO2417 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2112609 4603976 Sama_1726 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_927601.1 2112256 R 326297 CDS YP_927602.1 119774862 4603977 complement(2112584..2113759) 1 NC_008700.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2113759 nrdB 4603977 nrdB Shewanella amazonensis SB2B ribonucleotide-diphosphate reductase subunit beta YP_927602.1 2112584 R 326297 CDS YP_927603.1 119774863 4603978 complement(2113784..2116132) 1 NC_008700.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2116132 4603978 Sama_1728 Shewanella amazonensis SB2B ribonucleotide-diphosphate reductase subunit alpha YP_927603.1 2113784 R 326297 CDS YP_927604.1 119774864 4603979 complement(2116488..2117129) 1 NC_008700.1 KEGG: son:SO2414 phosphoglycolate phosphatase; phosphoglycolate phosphatase 2117129 4603979 Sama_1729 Shewanella amazonensis SB2B phosphoglycolate phosphatase YP_927604.1 2116488 R 326297 CDS YP_927605.1 119774865 4603980 complement(2117140..2117853) 1 NC_008700.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2117853 4603980 Sama_1730 Shewanella amazonensis SB2B 3-demethylubiquinone-9 3-methyltransferase YP_927605.1 2117140 R 326297 CDS YP_927606.1 119774866 4603981 2118311..2121016 1 NC_008700.1 KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A 2121016 4603981 Sama_1731 Shewanella amazonensis SB2B DNA gyrase subunit A YP_927606.1 2118311 D 326297 CDS YP_927607.1 119774867 4603982 2121128..2122222 1 NC_008700.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2122222 4603982 Sama_1732 Shewanella amazonensis SB2B phosphoserine aminotransferase YP_927607.1 2121128 D 326297 CDS YP_927608.1 119774868 4603983 complement(2122290..2123480) 1 NC_008700.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2123480 4603983 Sama_1733 Shewanella amazonensis SB2B aromatic amino acid aminotransferase YP_927608.1 2122290 R 326297 CDS YP_927609.1 119774869 4603984 2123951..2125237 1 NC_008700.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2125237 4603984 Sama_1734 Shewanella amazonensis SB2B 3-phosphoshikimate 1-carboxyvinyltransferase YP_927609.1 2123951 D 326297 CDS YP_927610.1 119774870 4603985 2125389..2126084 1 NC_008700.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2126084 cmk 4603985 cmk Shewanella amazonensis SB2B cytidylate kinase YP_927610.1 2125389 D 326297 CDS YP_927611.1 119774871 4603986 2126185..2127852 1 NC_008700.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2127852 rpsA 4603986 rpsA Shewanella amazonensis SB2B 30S ribosomal protein S1 YP_927611.1 2126185 D 326297 CDS YP_927612.1 119774872 4603987 2127929..2128216 1 NC_008700.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2128216 ihfB 4603987 ihfB Shewanella amazonensis SB2B integration host factor subunit beta YP_927612.1 2127929 D 326297 CDS YP_927613.1 119774873 4603988 2128299..2128640 1 NC_008700.1 KEGG: son:SO2400 hypothetical protein; membrane protein 2128640 4603988 Sama_1738 Shewanella amazonensis SB2B membrane protein YP_927613.1 2128299 D 326297 CDS YP_927614.1 119774874 4603989 2128642..2129802 1 NC_008700.1 KEGG: son:SO2399 hypothetical protein; hypothetical protein 2129802 4603989 Sama_1739 Shewanella amazonensis SB2B hypothetical protein YP_927614.1 2128642 D 326297 CDS YP_927615.1 119774875 4603990 2129830..2130531 1 NC_008700.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2130531 4603990 Sama_1740 Shewanella amazonensis SB2B orotidine 5'-phosphate decarboxylase YP_927615.1 2129830 D 326297 CDS YP_927616.1 119774876 4603991 2130596..2131414 1 NC_008700.1 KEGG: sdn:Sden_1758 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2131414 4603991 Sama_1741 Shewanella amazonensis SB2B short chain dehydrogenase YP_927616.1 2130596 D 326297 CDS YP_927617.1 119774877 4603992 2131491..2132036 1 NC_008700.1 KEGG: son:SO2396 hypothetical protein; hypothetical protein 2132036 4603992 Sama_1742 Shewanella amazonensis SB2B hypothetical protein YP_927617.1 2131491 D 326297 CDS YP_927618.1 119774878 4603993 2132170..2133906 1 NC_008700.1 KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase family protein 2133906 4603993 Sama_1743 Shewanella amazonensis SB2B acyl-CoA dehydrogenase family protein YP_927618.1 2132170 D 326297 CDS YP_927619.1 119774879 4603994 complement(2134055..2135719) 1 NC_008700.1 KEGG: son:SO2394 penicillin-binding protein 4; serine-type D-Ala-D-Ala carboxypeptidase 2135719 4603994 Sama_1744 Shewanella amazonensis SB2B serine-type D-Ala-D-Ala carboxypeptidase YP_927619.1 2134055 R 326297 CDS YP_927620.1 119774880 4603995 complement(2135793..2135978) 1 NC_008700.1 KEGG: son:SO2393 hypothetical protein; hypothetical protein 2135978 4603995 Sama_1745 Shewanella amazonensis SB2B hypothetical protein YP_927620.1 2135793 R 326297 CDS YP_927621.1 119774881 4603996 2136187..2136513 1 NC_008700.1 KEGG: vpa:VP0563 hypothetical protein; hypothetical protein 2136513 4603996 Sama_1746 Shewanella amazonensis SB2B hypothetical protein YP_927621.1 2136187 D 326297 CDS YP_927622.1 119774882 4603997 2136525..2137838 1 NC_008700.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2137838 pssA 4603997 pssA Shewanella amazonensis SB2B phosphatidylserine synthase YP_927622.1 2136525 D 326297 CDS YP_927623.1 119774883 4603998 2138020..2138778 1 NC_008700.1 KEGG: sdn:Sden_1780 hypothetical protein; hypothetical protein 2138778 4603998 Sama_1748 Shewanella amazonensis SB2B hypothetical protein YP_927623.1 2138020 D 326297 CDS YP_927624.1 119774884 4605966 complement(2139025..2141085) 1 NC_008700.1 KEGG: sdn:Sden_2951 protein of unknown function DUF839; hypothetical protein 2141085 4605966 Sama_1749 Shewanella amazonensis SB2B hypothetical protein YP_927624.1 2139025 R 326297 CDS YP_927625.1 119774885 4604000 2141242..2141571 1 NC_008700.1 KEGG: sdn:Sden_1781 putative orphan protein; hypothetical protein 2141571 4604000 Sama_1750 Shewanella amazonensis SB2B hypothetical protein YP_927625.1 2141242 D 326297 CDS YP_927626.1 119774886 4604001 complement(2141641..2142552) 1 NC_008700.1 KEGG: pha:PSHAa1736 hypothetical protein; hypothetical protein 2142552 4604001 Sama_1751 Shewanella amazonensis SB2B hypothetical protein YP_927626.1 2141641 R 326297 CDS YP_927627.1 119774887 4604002 complement(2142976..2144568) 1 NC_008700.1 KEGG: pha:PSHAa0289 hypothetical protein; hypothetical protein 2144568 4604002 Sama_1752 Shewanella amazonensis SB2B hypothetical protein YP_927627.1 2142976 R 326297 CDS YP_927628.1 119774888 4604003 complement(2144606..2145283) 1 NC_008700.1 member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 2145283 4604003 Sama_1753 Shewanella amazonensis SB2B putative RNA methyltransferase YP_927628.1 2144606 R 326297 CDS YP_927629.1 119774889 4604004 complement(2145540..2146097) 1 NC_008700.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2146097 4604004 Sama_1754 Shewanella amazonensis SB2B ecotin YP_927629.1 2145540 R 326297 CDS YP_927630.1 119774890 4604005 2146324..2147421 1 NC_008700.1 KEGG: son:SO2045 cation efflux family protein; cation efflux family protein 2147421 4604005 Sama_1755 Shewanella amazonensis SB2B cation efflux family protein YP_927630.1 2146324 D 326297 CDS YP_927631.1 119774891 4604006 2147502..2147930 1 NC_008700.1 KEGG: dde:Dde_2977 transcriptional regulator, MarR family; MarR family transcriptional regulator 2147930 4604006 Sama_1756 Shewanella amazonensis SB2B MarR family transcriptional regulator YP_927631.1 2147502 D 326297 CDS YP_927632.1 119774892 4604007 2148076..2150166 1 NC_008700.1 KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 2150166 4604007 Sama_1757 Shewanella amazonensis SB2B prolyl oligopeptidase YP_927632.1 2148076 D 326297 CDS YP_927633.1 119774893 4604008 2150332..2151948 1 NC_008700.1 KEGG: son:SO2048 membrane protein, putative; hypothetical protein 2151948 4604008 Sama_1758 Shewanella amazonensis SB2B hypothetical protein YP_927633.1 2150332 D 326297 CDS YP_927634.1 119774894 4604009 2151993..2153060 1 NC_008700.1 KEGG: sdn:Sden_1878 GGDEF domain protein; diguanylate cyclase 2153060 4604009 Sama_1759 Shewanella amazonensis SB2B diguanylate cyclase YP_927634.1 2151993 D 326297 CDS YP_927635.1 119774895 4604010 complement(2153130..2155865) 1 NC_008700.1 KEGG: son:SO2116 acetyltransferase, GNAT family; acetyltransferase 2155865 4604010 Sama_1760 Shewanella amazonensis SB2B acetyltransferase YP_927635.1 2153130 R 326297 CDS YP_927636.1 119774896 4605968 complement(2156410..2157771) 1 NC_008700.1 KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein 2157771 4605968 Sama_1761 Shewanella amazonensis SB2B MATE efflux family protein YP_927636.1 2156410 R 326297 CDS YP_927637.1 119774897 4604012 2157797..2158405 1 NC_008700.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2158405 4604012 Sama_1762 Shewanella amazonensis SB2B riboflavin synthase subunit alpha YP_927637.1 2157797 D 326297 CDS YP_927638.1 119774898 4604013 complement(2158399..2158599) 1 NC_008700.1 KEGG: son:SO2297 hypothetical protein; hypothetical protein 2158599 4604013 Sama_1763 Shewanella amazonensis SB2B hypothetical protein YP_927638.1 2158399 R 326297 CDS YP_927639.1 119774899 4604014 complement(2158599..2159357) 1 NC_008700.1 KEGG: pat:Patl_2501 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2159357 4604014 Sama_1764 Shewanella amazonensis SB2B short-chain dehydrogenase/reductase SDR YP_927639.1 2158599 R 326297 CDS YP_927640.1 119774900 4604015 2159575..2161503 1 NC_008700.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2161503 4604015 Sama_1765 Shewanella amazonensis SB2B threonyl-tRNA synthetase YP_927640.1 2159575 D 326297 CDS YP_927641.1 119774901 4604016 2161594..2162046 1 NC_008700.1 KEGG: son:SO2300 translation initiation factor IF-3; translation initiation factor IF-3 2162046 4604016 Sama_1766 Shewanella amazonensis SB2B translation initiation factor IF-3 YP_927641.1 2161594 D 326297 CDS YP_927642.1 119774902 4604017 2162135..2162329 1 NC_008700.1 KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 2162329 rpmI 4604017 rpmI Shewanella amazonensis SB2B 50S ribosomal protein L35 YP_927642.1 2162135 D 326297 CDS YP_927643.1 119774903 4604018 2162346..2162705 1 NC_008700.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2162705 rplT 4604018 rplT Shewanella amazonensis SB2B 50S ribosomal protein L20 YP_927643.1 2162346 D 326297 CDS YP_927644.1 119774904 4604019 complement(2162836..2163789) 1 NC_008700.1 KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase 2163789 4604019 Sama_1769 Shewanella amazonensis SB2B thioredoxin reductase YP_927644.1 2162836 R 326297 CDS YP_927645.1 119774905 4604020 complement(2163974..2165086) 1 NC_008700.1 KEGG: sdn:Sden_1741 alanine dehydrogenase; alanine dehydrogenase 2165086 4604020 Sama_1770 Shewanella amazonensis SB2B alanine dehydrogenase YP_927645.1 2163974 R 326297 CDS YP_927646.1 119774906 4604021 2165266..2165769 1 NC_008700.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2165769 4604021 Sama_1771 Shewanella amazonensis SB2B leucine-responsive transcriptional regulator YP_927646.1 2165266 D 326297 CDS YP_927647.1 119774907 4604022 2165958..2168744 1 NC_008700.1 KEGG: son:SO2306 cell division protein FtsK, putative; cell division protein FtsK 2168744 4604022 Sama_1772 Shewanella amazonensis SB2B cell division protein FtsK YP_927647.1 2165958 D 326297 CDS YP_927648.1 119774908 4604023 2168820..2169431 1 NC_008700.1 KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2169431 4604023 Sama_1773 Shewanella amazonensis SB2B outer membrane lipoprotein carrier protein LolA YP_927648.1 2168820 D 326297 CDS YP_927649.1 119774909 4604024 2169443..2170771 1 NC_008700.1 KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2170771 4604024 Sama_1774 Shewanella amazonensis SB2B recombination factor protein RarA YP_927649.1 2169443 D 326297 CDS YP_927650.1 119774910 4604025 2170764..2171138 1 NC_008700.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2171138 4604025 Sama_1775 Shewanella amazonensis SB2B camphor resistance protein CrcB YP_927650.1 2170764 D 326297 CDS YP_927651.1 119774911 4604026 2171156..2172442 1 NC_008700.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2172442 4604026 Sama_1776 Shewanella amazonensis SB2B seryl-tRNA synthetase YP_927651.1 2171156 D 326297 CDS YP_927652.1 119774912 4604027 2172470..2172589 1 NC_008700.1 KEGG: shm:Shewmr7_2008 hypothetical protein; hypothetical protein 2172589 4604027 Sama_1777 Shewanella amazonensis SB2B hypothetical protein YP_927652.1 2172470 D 326297 CDS YP_927653.1 119774913 4604028 complement(2172646..2172984) 1 NC_008700.1 KEGG: sdn:Sden_1805 DsrC-like protein; DsrC-like protein 2172984 4604028 Sama_1778 Shewanella amazonensis SB2B DsrC-like protein YP_927653.1 2172646 R 326297 CDS YP_927654.1 119774914 4604029 complement(2172978..2173271) 1 NC_008700.1 KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein 2173271 4604029 Sama_1779 Shewanella amazonensis SB2B hypothetical protein YP_927654.1 2172978 R 326297 CDS YP_927655.1 119774915 4604030 complement(2173271..2173627) 1 NC_008700.1 KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein 2173627 4604030 Sama_1780 Shewanella amazonensis SB2B hypothetical protein YP_927655.1 2173271 R 326297 CDS YP_927656.1 119774916 4604031 complement(2173637..2174056) 1 NC_008700.1 KEGG: son:SO2376 DsrE-related protein; DsrE-like protein 2174056 4604031 Sama_1781 Shewanella amazonensis SB2B DsrE-like protein YP_927656.1 2173637 R 326297 CDS YP_927657.1 119774917 4604032 complement(2174080..2174736) 1 NC_008700.1 KEGG: son:SO2375 membrane protein, putative; hypothetical protein 2174736 4604032 Sama_1782 Shewanella amazonensis SB2B hypothetical protein YP_927657.1 2174080 R 326297 CDS YP_927658.1 119774918 4604033 complement(2174802..2175704) 1 NC_008700.1 KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2175704 4604033 Sama_1783 Shewanella amazonensis SB2B putative DNA-binding transcriptional regulator YP_927658.1 2174802 R 326297 CDS YP_927659.1 119774919 4604034 2175843..2177144 1 NC_008700.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2177144 4604034 Sama_1784 Shewanella amazonensis SB2B inner membrane transport protein YdhC YP_927659.1 2175843 D 326297 CDS YP_927660.1 119774920 4604035 complement(2177393..2177797) 1 NC_008700.1 KEGG: cps:CPS_1915 transcriptional regulator, MerR family; MerR family transcriptional regulator 2177797 4604035 Sama_1785 Shewanella amazonensis SB2B MerR family transcriptional regulator YP_927660.1 2177393 R 326297 CDS YP_927661.1 119774921 4604036 complement(2177808..2180177) 1 NC_008700.1 KEGG: cps:CPS_1916 copper-translocating P-type ATPase; copper-translocating P-type ATPase 2180177 4604036 Sama_1786 Shewanella amazonensis SB2B copper-translocating P-type ATPase YP_927661.1 2177808 R 326297 CDS YP_927662.1 119774922 4604037 2180338..2180574 1 NC_008700.1 KEGG: rso:RSc3349 hypothetical protein; hypothetical protein 2180574 4604037 Sama_1787 Shewanella amazonensis SB2B hypothetical protein YP_927662.1 2180338 D 326297 CDS YP_927663.1 119774923 4604038 complement(2181147..2181476) 1 NC_008700.1 KEGG: sdn:Sden_1854 hypothetical protein; hypothetical protein 2181476 4604038 Sama_1788 Shewanella amazonensis SB2B hypothetical protein YP_927663.1 2181147 R 326297 CDS YP_927664.1 119774924 4604039 2181634..2183208 1 NC_008700.1 KEGG: son:SO2366 response regulator; response regulator receiver protein 2183208 4604039 Sama_1789 Shewanella amazonensis SB2B response regulator receiver protein YP_927664.1 2181634 D 326297 CDS YP_927665.1 119774925 4604040 complement(2183211..2183663) 1 NC_008700.1 KEGG: son:SO2365 hypothetical protein; hypothetical protein 2183663 4604040 Sama_1790 Shewanella amazonensis SB2B hypothetical protein YP_927665.1 2183211 R 326297 CDS YP_927666.1 119774926 4604041 2183928..2185364 1 NC_008700.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2185364 4604041 Sama_1791 Shewanella amazonensis SB2B cbb3-type cytochrome c oxidase subunit I YP_927666.1 2183928 D 326297 CDS YP_927667.1 119774927 4604042 2185377..2185982 1 NC_008700.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2185982 4604042 Sama_1792 Shewanella amazonensis SB2B cbb3-type cytochrome c oxidase subunit II YP_927667.1 2185377 D 326297 CDS YP_927668.1 119774928 4604043 2185995..2186168 1 NC_008700.1 KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 2186168 4604043 Sama_1793 Shewanella amazonensis SB2B cytochrome c oxidase, cbb3-type, CcoQ subunit YP_927668.1 2185995 D 326297 CDS YP_927669.1 119774929 4604044 2186168..2187145 1 NC_008700.1 KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2187145 4604044 Sama_1794 Shewanella amazonensis SB2B cytochrome c oxidase, cbb3-type subunit III YP_927669.1 2186168 D 326297 CDS YP_927670.1 119774930 4604045 2187258..2187737 1 NC_008700.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2187737 4604045 Sama_1795 Shewanella amazonensis SB2B hypothetical protein YP_927670.1 2187258 D 326297 CDS YP_927671.1 119774931 4604046 2187745..2190132 1 NC_008700.1 KEGG: son:SO2359 cation transport ATPase, E1-E2 family; cation transporter E1-E2 family ATPase 2190132 4604046 Sama_1796 Shewanella amazonensis SB2B cation transporter E1-E2 family ATPase YP_927671.1 2187745 D 326297 CDS YP_927672.1 119774932 4604047 2190129..2190329 1 NC_008700.1 KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; hypothetical protein 2190329 4604047 Sama_1797 Shewanella amazonensis SB2B hypothetical protein YP_927672.1 2190129 D 326297 CDS YP_927673.1 119774933 4604048 2190329..2191021 1 NC_008700.1 KEGG: son:SO2357 hypothetical protein; hypothetical protein 2191021 4604048 Sama_1798 Shewanella amazonensis SB2B hypothetical protein YP_927673.1 2190329 D 326297 CDS YP_927674.1 119774934 4604049 2191078..2191830 1 NC_008700.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2191830 4604049 Sama_1799 Shewanella amazonensis SB2B fumarate/nitrate reduction transcriptional regulator YP_927674.1 2191078 D 326297 CDS YP_927675.1 119774935 4604050 2191915..2192847 1 NC_008700.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2192847 4604050 Sama_1800 Shewanella amazonensis SB2B universal stress protein UspE YP_927675.1 2191915 D 326297 CDS YP_927676.1 119774936 4604051 2192916..2193875 1 NC_008700.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2193875 4604051 Sama_1801 Shewanella amazonensis SB2B C32 tRNA thiolase YP_927676.1 2192916 D 326297 CDS YP_927677.1 119774937 4604052 complement(2193985..2194581) 1 NC_008700.1 KEGG: son:SO2353 hypothetical protein; hypothetical protein 2194581 4604052 Sama_1802 Shewanella amazonensis SB2B hypothetical protein YP_927677.1 2193985 R 326297 CDS YP_927678.1 119774938 4604053 complement(2194523..2195395) 1 NC_008700.1 KEGG: son:SO2352 bax protein, putative; bax protein 2195395 4604053 Sama_1803 Shewanella amazonensis SB2B bax protein YP_927678.1 2194523 R 326297 CDS YP_927679.1 119774939 4604054 2195616..2196524 1 NC_008700.1 KEGG: son:SO2351 hypothetical protein; hypothetical protein 2196524 4604054 Sama_1804 Shewanella amazonensis SB2B hypothetical protein YP_927679.1 2195616 D 326297 CDS YP_927680.1 119774940 4604055 complement(2196597..2197790) 1 NC_008700.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2197790 4604055 Sama_1805 Shewanella amazonensis SB2B aromatic amino acid aminotransferase YP_927680.1 2196597 R 326297 CDS YP_927681.1 119774941 4605970 complement(2198300..2199739) 1 NC_008700.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2199739 4605970 Sama_1806 Shewanella amazonensis SB2B glyceraldehyde-3-phosphate dehydrogenase YP_927681.1 2198300 R 326297 CDS YP_927682.1 119774942 4604057 2199962..2200831 1 NC_008700.1 KEGG: son:SO2346 hypothetical protein; hypothetical protein 2200831 4604057 Sama_1807 Shewanella amazonensis SB2B hypothetical protein YP_927682.1 2199962 D 326297 CDS YP_927683.1 119774943 4604058 2200983..2201996 1 NC_008700.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 2201996 4604058 Sama_1808 Shewanella amazonensis SB2B glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) YP_927683.1 2200983 D 326297 CDS YP_927684.1 119774944 4604059 complement(2202354..2202998) 1 NC_008700.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2202998 4604059 Sama_1809 Shewanella amazonensis SB2B keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_927684.1 2202354 R 326297 CDS YP_927685.1 119774945 4604060 complement(2203018..2204844) 1 NC_008700.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2204844 4604060 Sama_1810 Shewanella amazonensis SB2B phosphogluconate dehydratase YP_927685.1 2203018 R 326297 CDS YP_927686.1 119774946 4604061 complement(2204856..2205554) 1 NC_008700.1 KEGG: shm:Shewmr7_1930 6-phosphogluconolactonase; 6-phosphogluconolactonase 2205554 4604061 Sama_1811 Shewanella amazonensis SB2B 6-phosphogluconolactonase YP_927686.1 2204856 R 326297 CDS YP_927687.1 119774947 4604062 complement(2205565..2207037) 1 NC_008700.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2207037 4604062 Sama_1812 Shewanella amazonensis SB2B glucose-6-phosphate 1-dehydrogenase YP_927687.1 2205565 R 326297 CDS YP_927688.1 119774948 4604063 2207350..2208204 1 NC_008700.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2208204 4604063 Sama_1813 Shewanella amazonensis SB2B DNA-binding transcriptional regulator HexR YP_927688.1 2207350 D 326297 CDS YP_927689.1 119774949 4604064 2208391..2209830 1 NC_008700.1 KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 2209830 4604064 Sama_1814 Shewanella amazonensis SB2B pyruvate kinase YP_927689.1 2208391 D 326297 CDS YP_927690.1 119774950 4604065 complement(2210044..2212323) 1 NC_008700.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2212323 4604065 Sama_1815 Shewanella amazonensis SB2B acyl-CoA dehydrogenase YP_927690.1 2210044 R 326297 CDS YP_927691.1 119774951 4604066 complement(2212338..2213024) 1 NC_008700.1 KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator 2213024 4604066 Sama_1816 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_927691.1 2212338 R 326297 CDS YP_927692.1 119774952 4604067 2213192..2215048 1 NC_008700.1 KEGG: sfr:Sfri_1887 peptidyl-dipeptidase A; peptidyl-dipeptidase A 2215048 4604067 Sama_1817 Shewanella amazonensis SB2B peptidyl-dipeptidase A YP_927692.1 2213192 D 326297 CDS YP_927693.1 119774953 4604068 complement(2215257..2215913) 1 NC_008700.1 KEGG: son:SO2495 Smr domain protein; Smr domain-containing protein 2215913 4604068 Sama_1818 Shewanella amazonensis SB2B Smr domain-containing protein YP_927693.1 2215257 R 326297 CDS YP_927694.1 119774954 4604069 2215956..2216519 1 NC_008700.1 KEGG: son:SO2495.1 hypothetical protein; hypothetical protein 2216519 4604069 Sama_1819 Shewanella amazonensis SB2B hypothetical protein YP_927694.1 2215956 D 326297 CDS YP_927695.1 119774955 4604070 2216550..2217011 1 NC_008700.1 KEGG: sdn:Sden_2119 metal-binding protein; metal-binding protein 2217011 4604070 Sama_1820 Shewanella amazonensis SB2B metal-binding protein YP_927695.1 2216550 D 326297 CDS YP_927696.1 119774956 4604071 complement(2217047..2219224) 1 NC_008700.1 KEGG: son:SO2498 sensory box protein; putative diguanylate phosphodiesterase 2219224 4604071 Sama_1821 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_927696.1 2217047 R 326297 CDS YP_927697.1 119774957 4604072 complement(2219360..2219647) 1 NC_008700.1 KEGG: son:SO2499 hypothetical protein; hypothetical protein 2219647 4604072 Sama_1822 Shewanella amazonensis SB2B hypothetical protein YP_927697.1 2219360 R 326297 CDS YP_927698.1 119774958 4604073 complement(2219742..2220254) 1 NC_008700.1 KEGG: sdn:Sden_2012 hypothetical protein; hypothetical protein 2220254 4604073 Sama_1823 Shewanella amazonensis SB2B hypothetical protein YP_927698.1 2219742 R 326297 CDS YP_927699.1 119774959 4605973 2220855..2221925 1 NC_008700.1 KEGG: sdn:Sden_2013 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 2221925 4605973 Sama_1824 Shewanella amazonensis SB2B pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_927699.1 2220855 D 326297 CDS YP_927700.1 119774960 4604075 complement(2222001..2222702) 1 NC_008700.1 KEGG: sdn:Sden_2014 radical activating enzyme; radical activating enzyme 2222702 4604075 Sama_1825 Shewanella amazonensis SB2B radical activating enzyme YP_927700.1 2222001 R 326297 CDS YP_927701.1 119774961 4604076 2222863..2223555 1 NC_008700.1 KEGG: son:SO2503 ExsB protein; ExsB protein 2223555 4604076 Sama_1826 Shewanella amazonensis SB2B ExsB protein YP_927701.1 2222863 D 326297 CDS YP_927702.1 119774962 4604077 2223552..2224169 1 NC_008700.1 KEGG: son:SO2504 hypothetical protein; hypothetical protein 2224169 4604077 Sama_1827 Shewanella amazonensis SB2B hypothetical protein YP_927702.1 2223552 D 326297 CDS YP_927703.1 119774963 4604078 complement(2224267..2226285) 1 NC_008700.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2226285 4604078 Sama_1828 Shewanella amazonensis SB2B excinuclease ABC subunit B YP_927703.1 2224267 R 326297 CDS YP_927704.1 119774964 4605978 2227669..2229609 1 NC_008700.1 KEGG: son:SO2507 GGDEF domain protein protein; putative diguanylate phosphodiesterase 2229609 4605978 Sama_1829 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_927704.1 2227669 D 326297 CDS YP_927705.1 119774965 4604080 2229685..2230263 1 NC_008700.1 KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2230263 4604080 Sama_1830 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit E YP_927705.1 2229685 D 326297 CDS YP_927706.1 119774966 4604081 2230263..2230832 1 NC_008700.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2230832 4604081 Sama_1831 Shewanella amazonensis SB2B electron transport complex protein RnfB YP_927706.1 2230263 D 326297 CDS YP_927707.1 119774967 4604082 2230826..2233468 1 NC_008700.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2233468 4604082 Sama_1832 Shewanella amazonensis SB2B electron transport complex protein RnfC YP_927707.1 2230826 D 326297 CDS YP_927708.1 119774968 4604083 2233471..2234517 1 NC_008700.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2234517 rnfD 4604083 rnfD Shewanella amazonensis SB2B electron transport complex protein RnfD YP_927708.1 2233471 D 326297 CDS YP_927709.1 119774969 4604084 2234527..2235174 1 NC_008700.1 KEGG: son:SO2512 electron transport complex protein RnfG; electron transport complex protein RnfG 2235174 4604084 Sama_1834 Shewanella amazonensis SB2B electron transport complex protein RnfG YP_927709.1 2234527 D 326297 CDS YP_927710.1 119774970 4604085 2235167..2235865 1 NC_008700.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2235865 4604085 Sama_1835 Shewanella amazonensis SB2B electron transport complex protein RsxE YP_927710.1 2235167 D 326297 CDS YP_927711.1 119774971 4604086 2235897..2236538 1 NC_008700.1 KEGG: son:SO2514 endonuclease III; endonuclease III 2236538 4604086 Sama_1836 Shewanella amazonensis SB2B endonuclease III YP_927711.1 2235897 D 326297 CDS YP_927712.1 119774972 4604087 2236858..2237268 1 NC_008700.1 KEGG: son:SO2044 lactoylglutathione lyase; lactoylglutathione lyase 2237268 4604087 Sama_1837 Shewanella amazonensis SB2B lactoylglutathione lyase YP_927712.1 2236858 D 326297 CDS YP_927713.1 119774973 4604088 complement(2237370..2239889) 1 NC_008700.1 KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor 2239889 4604088 Sama_1838 Shewanella amazonensis SB2B TonB-dependent receptor YP_927713.1 2237370 R 326297 CDS YP_927714.1 119774974 4604089 complement(2240347..2241351) 1 NC_008700.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2241351 ruvB 4604089 ruvB Shewanella amazonensis SB2B Holliday junction DNA helicase RuvB YP_927714.1 2240347 R 326297 CDS YP_927715.1 119774975 4604090 complement(2241369..2241986) 1 NC_008700.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2241986 ruvA 4604090 ruvA Shewanella amazonensis SB2B Holliday junction DNA helicase RuvA YP_927715.1 2241369 R 326297 CDS YP_927716.1 119774976 4604091 complement(2241983..2242504) 1 NC_008700.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2242504 ruvC 4604091 ruvC Shewanella amazonensis SB2B Holliday junction resolvase YP_927716.1 2241983 R 326297 CDS YP_927717.1 119774977 4604092 complement(2242508..2243254) 1 NC_008700.1 KEGG: sdn:Sden_1886 protein of unknown function DUF28; hypothetical protein 2243254 4604092 Sama_1842 Shewanella amazonensis SB2B hypothetical protein YP_927717.1 2242508 R 326297 CDS YP_927718.1 119774978 4604093 complement(2243378..2245153) 1 NC_008700.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2245153 aspS 4604093 aspS Shewanella amazonensis SB2B aspartyl-tRNA synthetase YP_927718.1 2243378 R 326297 CDS YP_927719.1 119774979 4604094 complement(2245344..2248142) 1 NC_008700.1 KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein protein; extracellular solute-binding protein 2248142 4604094 Sama_1844 Shewanella amazonensis SB2B extracellular solute-binding protein YP_927719.1 2245344 R 326297 CDS YP_927720.1 119774980 4604095 2248292..2249023 1 NC_008700.1 KEGG: son:SO2435 methyltransferase, putative; methyltransferase 2249023 4604095 Sama_1845 Shewanella amazonensis SB2B methyltransferase YP_927720.1 2248292 D 326297 CDS YP_927721.1 119774981 4604096 2249020..2250012 1 NC_008700.1 KEGG: son:SO2436 methyltransferase, putative; methyltransferase 2250012 4604096 Sama_1846 Shewanella amazonensis SB2B methyltransferase YP_927721.1 2249020 D 326297 CDS YP_927722.1 119774982 4604097 2250047..2250766 1 NC_008700.1 KEGG: sdn:Sden_1891 protein of unknown function DUF785; hypothetical protein 2250766 4604097 Sama_1847 Shewanella amazonensis SB2B hypothetical protein YP_927722.1 2250047 D 326297 CDS YP_927723.1 119774983 4604098 2250793..2252295 1 NC_008700.1 KEGG: sdn:Sden_1892 gonadoliberin III-related protein; gonadoliberin III-like protein 2252295 4604098 Sama_1848 Shewanella amazonensis SB2B gonadoliberin III-like protein YP_927723.1 2250793 D 326297 CDS YP_927724.1 119774984 4604099 2252297..2253253 1 NC_008700.1 KEGG: sdn:Sden_1893 alpha-L-glutamate ligase-related protein; alpha-L-glutamate ligase-like protein 2253253 4604099 Sama_1849 Shewanella amazonensis SB2B alpha-L-glutamate ligase-like protein YP_927724.1 2252297 D 326297 CDS YP_927725.1 119774985 4604100 2253216..2254880 1 NC_008700.1 KEGG: son:SO2437 hypothetical protein; hypothetical protein 2254880 4604100 Sama_1850 Shewanella amazonensis SB2B hypothetical protein YP_927725.1 2253216 D 326297 CDS YP_927726.1 119774986 4604101 2254867..2256027 1 NC_008700.1 KEGG: sdn:Sden_1895 hypothetical protein; hypothetical protein 2256027 4604101 Sama_1851 Shewanella amazonensis SB2B hypothetical protein YP_927726.1 2254867 D 326297 CDS YP_927727.1 119774987 4604102 2256261..2257166 1 NC_008700.1 KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2257166 4604102 Sama_1852 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927727.1 2256261 D 326297 CDS YP_927728.1 119774988 4604103 complement(2257149..2258933) 1 NC_008700.1 KEGG: son:SO2439 SrpA-related protein; hypothetical protein 2258933 4604103 Sama_1853 Shewanella amazonensis SB2B hypothetical protein YP_927728.1 2257149 R 326297 CDS YP_927729.1 119774989 4604104 complement(2258939..2259190) 1 NC_008700.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2259190 4604104 Sama_1854 Shewanella amazonensis SB2B methyl-accepting chemotaxis protein YP_927729.1 2258939 R 326297 CDS YP_927730.1 119774990 4604105 complement(2259305..2260420) 1 NC_008700.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2260420 thiH 4604105 thiH Shewanella amazonensis SB2B thiamine biosynthesis protein ThiH YP_927730.1 2259305 R 326297 CDS YP_927731.1 119774991 4604106 complement(2260417..2261232) 1 NC_008700.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2261232 thiG 4604106 thiG Shewanella amazonensis SB2B thiazole synthase YP_927731.1 2260417 R 326297 CDS YP_927732.1 119774992 4604107 complement(2261234..2261437) 1 NC_008700.1 KEGG: sdn:Sden_1773 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2261437 4604107 Sama_1857 Shewanella amazonensis SB2B thiamine biosynthesis protein ThiS YP_927732.1 2261234 R 326297 CDS YP_927733.1 119774993 4604108 complement(2261431..2262183) 1 NC_008700.1 KEGG: son:SO2443 thiF protein, putative; thiF protein 2262183 4604108 Sama_1858 Shewanella amazonensis SB2B thiF protein YP_927733.1 2261431 R 326297 CDS YP_927734.1 119774994 4604109 complement(2262173..2263750) 1 NC_008700.1 KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase 2263750 4604109 Sama_1859 Shewanella amazonensis SB2B phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase YP_927734.1 2262173 R 326297 CDS YP_927735.1 119774995 4604110 complement(2263751..2265745) 1 NC_008700.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2265745 4604110 Sama_1860 Shewanella amazonensis SB2B thiamine biosynthesis protein ThiC YP_927735.1 2263751 R 326297 CDS YP_927736.1 119774996 4604111 complement(2266129..2267208) 1 NC_008700.1 KEGG: she:Shewmr4_1880 hypothetical protein; hypothetical protein 2267208 4604111 Sama_1861 Shewanella amazonensis SB2B hypothetical protein YP_927736.1 2266129 R 326297 CDS YP_927737.1 119774997 4604112 2267774..2268499 1 NC_008700.1 KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein 2268499 4604112 Sama_1862 Shewanella amazonensis SB2B hemolysin III family channel protein YP_927737.1 2267774 D 326297 CDS YP_927738.1 119774998 4604113 complement(2268654..2271746) 1 NC_008700.1 KEGG: vpa:VP2036 putative DNA polymerase III alpha chain; DNA-directed DNA polymerase 2271746 4604113 Sama_1863 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_927738.1 2268654 R 326297 CDS YP_927739.1 119774999 4604114 complement(2271746..2274037) 1 NC_008700.1 KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; hypothetical protein 2274037 4604114 Sama_1864 Shewanella amazonensis SB2B hypothetical protein YP_927739.1 2271746 R 326297 CDS YP_927740.1 119775000 4604115 complement(2274199..2274894) 1 NC_008700.1 KEGG: pat:Patl_0036 hypothetical protein; hypothetical protein 2274894 4604115 Sama_1865 Shewanella amazonensis SB2B hypothetical protein YP_927740.1 2274199 R 326297 CDS YP_927741.1 119775001 4604116 2275054..2276460 1 NC_008700.1 KEGG: vpa:VPA0149 putative two-component system sensor kinase; putative two-component system sensor kinase 2276460 4604116 Sama_1866 Shewanella amazonensis SB2B putative two-component system sensor kinase YP_927741.1 2275054 D 326297 CDS YP_927742.1 119775002 4604117 2276496..2276837 1 NC_008700.1 KEGG: sdn:Sden_1767 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2276837 4604117 Sama_1867 Shewanella amazonensis SB2B methylated-DNA--protein-cysteine methyltransferase YP_927742.1 2276496 D 326297 CDS YP_927743.1 119775003 4604118 2276852..2277583 1 NC_008700.1 KEGG: son:SO2533 hypothetical protein; hypothetical protein 2277583 4604118 Sama_1868 Shewanella amazonensis SB2B hypothetical protein YP_927743.1 2276852 D 326297 CDS YP_927744.1 119775004 4604119 complement(2277659..2278468) 1 NC_008700.1 KEGG: son:SO2535 hypothetical amidotransferase; amidotransferase 2278468 4604119 Sama_1869 Shewanella amazonensis SB2B amidotransferase YP_927744.1 2277659 R 326297 CDS YP_927745.1 119775005 4604120 2278706..2281153 1 NC_008700.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2281153 fadE 4604120 fadE Shewanella amazonensis SB2B acyl-CoA dehydrogenase YP_927745.1 2278706 D 326297 CDS YP_927746.1 119775006 4604121 complement(2281277..2283277) 1 NC_008700.1 KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger family protein 2283277 4604121 Sama_1871 Shewanella amazonensis SB2B sodium/hydrogen exchanger family protein YP_927746.1 2281277 R 326297 CDS YP_927747.1 119775007 4604122 2283634..2286774 1 NC_008700.1 KEGG: mxa:MXAN_6150 sensor histidine kinase; sensor histidine kinase 2286774 4604122 Sama_1872 Shewanella amazonensis SB2B sensor histidine kinase YP_927747.1 2283634 D 326297 CDS YP_927748.1 119775008 4604123 2286764..2287411 1 NC_008700.1 KEGG: mxa:MXAN_6149 DNA-binding response regulator, LuxR family; response regulator receiver protein 2287411 4604123 Sama_1873 Shewanella amazonensis SB2B response regulator receiver protein YP_927748.1 2286764 D 326297 CDS YP_927749.1 119775009 4604124 2288016..2288636 1 NC_008700.1 hypothetical protein 2288636 4604124 Sama_1874 Shewanella amazonensis SB2B hypothetical protein YP_927749.1 2288016 D 326297 CDS YP_927750.1 119775010 4604125 2288636..2291083 1 NC_008700.1 hypothetical protein 2291083 4604125 Sama_1875 Shewanella amazonensis SB2B hypothetical protein YP_927750.1 2288636 D 326297 CDS YP_927751.1 119775011 4604126 2291278..2293101 1 NC_008700.1 KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2293101 4604126 Sama_1876 Shewanella amazonensis SB2B peptidase S8/S53 subtilisin kexin sedolisin YP_927751.1 2291278 D 326297 CDS YP_927752.1 119775012 4604127 2293225..2293503 1 NC_008700.1 KEGG: abo:ABO_2082 transposase, putative; transposase 2293503 4604127 Sama_1877 Shewanella amazonensis SB2B transposase YP_927752.1 2293225 D 326297 CDS YP_927753.1 119775013 4604128 2293542..2294381 1 NC_008700.1 KEGG: son:SOA0129 transposase, IS3 family; IS3 family transposase 2294381 4604128 Sama_1878 Shewanella amazonensis SB2B IS3 family transposase YP_927753.1 2293542 D 326297 CDS YP_927754.1 119775014 4605979 complement(2294720..2296039) 1 NC_008700.1 KEGG: son:SO2557 hypothetical protein; hypothetical protein 2296039 4605979 Sama_1879 Shewanella amazonensis SB2B hypothetical protein YP_927754.1 2294720 R 326297 CDS YP_927755.1 119775015 4604130 complement(2296021..2296749) 1 NC_008700.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; DNA-directed DNA polymerase 2296749 4604130 Sama_1880 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_927755.1 2296021 R 326297 CDS YP_927756.1 119775016 4604131 2296821..2297291 1 NC_008700.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2297291 rnhA 4604131 rnhA Shewanella amazonensis SB2B ribonuclease H YP_927756.1 2296821 D 326297 CDS YP_927757.1 119775017 4604132 complement(2297333..2298241) 1 NC_008700.1 KEGG: son:SO2561 transcriptional regulator, LysR family; LysR family transcriptional regulator 2298241 4604132 Sama_1882 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927757.1 2297333 R 326297 CDS YP_927758.1 119775018 4604133 complement(2298238..2298960) 1 NC_008700.1 KEGG: son:SO2562 hypothetical protein; hypothetical protein 2298960 4604133 Sama_1883 Shewanella amazonensis SB2B hypothetical protein YP_927758.1 2298238 R 326297 CDS YP_927759.1 119775019 4604134 2299143..2299919 1 NC_008700.1 KEGG: bbr:BB4280 probable hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2299919 4604134 Sama_1884 Shewanella amazonensis SB2B hydroxyacylglutathione hydrolase YP_927759.1 2299143 D 326297 CDS YP_927760.1 119775020 4604135 2300052..2301539 1 NC_008700.1 KEGG: son:SO2564 transglycosylase, Slt family; Slt family transglycosylase 2301539 4604135 Sama_1885 Shewanella amazonensis SB2B Slt family transglycosylase YP_927760.1 2300052 D 326297 CDS YP_927761.1 119775021 4604136 complement(2302018..2302545) 1 NC_008700.1 KEGG: sdn:Sden_2023 intracellular proteinase inhibitor domain protein; hypothetical protein 2302545 4604136 Sama_1886 Shewanella amazonensis SB2B hypothetical protein YP_927761.1 2302018 R 326297 CDS YP_927762.1 119775022 4604137 complement(2302542..2304356) 1 NC_008700.1 KEGG: son:SO2566 AsmA protein; AsmA protein 2304356 4604137 Sama_1887 Shewanella amazonensis SB2B AsmA protein YP_927762.1 2302542 R 326297 CDS YP_927763.1 119775023 4604138 complement(2304369..2304863) 1 NC_008700.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2304863 4604138 Sama_1888 Shewanella amazonensis SB2B ribonuclease activity regulator protein RraA YP_927763.1 2304369 R 326297 CDS YP_927764.1 119775024 4604139 2305038..2305358 1 NC_008700.1 KEGG: son:SO2569 hypothetical protein; hypothetical protein 2305358 4604139 Sama_1889 Shewanella amazonensis SB2B hypothetical protein YP_927764.1 2305038 D 326297 CDS YP_927765.1 119775025 4604140 2305835..2306821 1 NC_008700.1 KEGG: vvy:VV2031 hypothetical protein; hypothetical protein 2306821 4604140 Sama_1890 Shewanella amazonensis SB2B hypothetical protein YP_927765.1 2305835 D 326297 CDS YP_927766.1 119775026 4604141 2306830..2308137 1 NC_008700.1 KEGG: vch:VC1370 GGDEF family protein; diguanylate cyclase 2308137 4604141 Sama_1891 Shewanella amazonensis SB2B diguanylate cyclase YP_927766.1 2306830 D 326297 CDS YP_927767.1 119775027 4604142 complement(2308090..2308716) 1 NC_008700.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2308716 4604142 Sama_1892 Shewanella amazonensis SB2B putative sulfite oxidase subunit YedZ YP_927767.1 2308090 R 326297 CDS YP_927768.1 119775028 4604143 complement(2308716..2309720) 1 NC_008700.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2309720 4604143 Sama_1893 Shewanella amazonensis SB2B putative sulfite oxidase subunit YedY YP_927768.1 2308716 R 326297 CDS YP_927769.1 119775029 4604144 2309910..2311472 1 NC_008700.1 KEGG: son:SO2041 hypothetical protein; hypothetical protein 2311472 4604144 Sama_1894 Shewanella amazonensis SB2B hypothetical protein YP_927769.1 2309910 D 326297 CDS YP_927770.1 119775030 4604145 2311492..2313408 1 NC_008700.1 KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; soluble lytic murein transglycosylase 2313408 4604145 Sama_1895 Shewanella amazonensis SB2B soluble lytic murein transglycosylase YP_927770.1 2311492 D 326297 CDS YP_927771.1 119775031 4604146 2313636..2314424 1 NC_008700.1 KEGG: son:SO2039 hypothetical protein; putative diguanylate phosphodiesterase 2314424 4604146 Sama_1896 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_927771.1 2313636 D 326297 CDS YP_927772.1 119775032 4604147 2314457..2315386 1 NC_008700.1 KEGG: son:SO2153 MoxR protein; MoxR protein 2315386 4604147 Sama_1897 Shewanella amazonensis SB2B MoxR protein YP_927772.1 2314457 D 326297 CDS YP_927773.1 119775033 4604148 2315386..2316414 1 NC_008700.1 KEGG: son:SO2151 hypothetical protein; hypothetical protein 2316414 4604148 Sama_1898 Shewanella amazonensis SB2B hypothetical protein YP_927773.1 2315386 D 326297 CDS YP_927774.1 119775034 4604149 2316415..2318484 1 NC_008700.1 KEGG: son:SO2150 transglutaminase family protein; transglutaminase family protein 2318484 4604149 Sama_1899 Shewanella amazonensis SB2B transglutaminase family protein YP_927774.1 2316415 D 326297 CDS YP_927775.1 119775035 4604150 2318577..2322068 1 NC_008700.1 KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2322068 4604150 Sama_1900 Shewanella amazonensis SB2B exodeoxyribonuclease V subunit gamma YP_927775.1 2318577 D 326297 CDS YP_927776.1 119775036 4604151 2322070..2325744 1 NC_008700.1 KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2325744 4604151 Sama_1901 Shewanella amazonensis SB2B exodeoxyribonuclease V subunit beta YP_927776.1 2322070 D 326297 CDS YP_927777.1 119775037 4604152 2325741..2327636 1 NC_008700.1 KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V 2327636 4604152 Sama_1902 Shewanella amazonensis SB2B exodeoxyribonuclease V YP_927777.1 2325741 D 326297 CDS YP_927778.1 119775038 4604153 2327736..2328746 1 NC_008700.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2328746 ddl 4604153 ddl Shewanella amazonensis SB2B D-alanyl-alanine synthetase A YP_927778.1 2327736 D 326297 CDS YP_927779.1 119775039 4604154 2329003..2330724 1 NC_008700.1 activates fatty acids by binding to coenzyme A; AMP-binding protein 2330724 4604154 Sama_1904 Shewanella amazonensis SB2B AMP-binding protein YP_927779.1 2329003 D 326297 CDS YP_927780.1 119775040 4604155 complement(2330816..2333920) 1 NC_008700.1 KEGG: son:SO1882 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 2333920 4604155 Sama_1905 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_927780.1 2330816 R 326297 CDS YP_927781.1 119775041 4604156 complement(2333917..2335002) 1 NC_008700.1 KEGG: son:SO1881 HlyD family-related protein; HlyD family-like protein 2335002 4604156 Sama_1906 Shewanella amazonensis SB2B HlyD family-like protein YP_927781.1 2333917 R 326297 CDS YP_927782.1 119775042 4604157 complement(2335388..2336452) 1 NC_008700.1 KEGG: son:SO1880 lipoprotein-34 NlpB; lipoprotein-34 NlpB 2336452 4604157 Sama_1907 Shewanella amazonensis SB2B lipoprotein-34 NlpB YP_927782.1 2335388 R 326297 CDS YP_927783.1 119775043 4604158 complement(2336495..2337376) 1 NC_008700.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2337376 4604158 Sama_1908 Shewanella amazonensis SB2B dihydrodipicolinate synthase YP_927783.1 2336495 R 326297 CDS YP_927784.1 119775044 4604159 2337549..2338076 1 NC_008700.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2338076 4604159 Sama_1909 Shewanella amazonensis SB2B glycine cleavage system transcriptional repressor YP_927784.1 2337549 D 326297 CDS YP_927785.1 119775045 4604160 2338103..2338567 1 NC_008700.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2338567 bcp 4604160 bcp Shewanella amazonensis SB2B thioredoxin-dependent thiol peroxidase YP_927785.1 2338103 D 326297 CDS YP_927786.1 119775046 4604161 complement(2338667..2339785) 1 NC_008700.1 KEGG: sdn:Sden_1649 protein of unknown function UPF0118; hypothetical protein 2339785 4604161 Sama_1911 Shewanella amazonensis SB2B hypothetical protein YP_927786.1 2338667 R 326297 CDS YP_927787.1 119775047 4604162 complement(2339843..2340073) 1 NC_008700.1 KEGG: son:SO2868 hypothetical protein; hypothetical protein 2340073 4604162 Sama_1912 Shewanella amazonensis SB2B hypothetical protein YP_927787.1 2339843 R 326297 CDS YP_927788.1 119775048 4604163 2340177..2341646 1 NC_008700.1 KEGG: she:Shewmr4_2347 peptidase M48, Ste24p; peptidase M48, Ste24p 2341646 4604163 Sama_1913 Shewanella amazonensis SB2B peptidase M48, Ste24p YP_927788.1 2340177 D 326297 CDS YP_927789.1 119775049 4604164 2341739..2342089 1 NC_008700.1 KEGG: sdn:Sden_1646 arsenate reductase; arsenate reductase 2342089 4604164 Sama_1914 Shewanella amazonensis SB2B arsenate reductase YP_927789.1 2341739 D 326297 CDS YP_927790.1 119775050 4604165 2342098..2342490 1 NC_008700.1 KEGG: son:SO2872 hypothetical protein; hypothetical protein 2342490 4604165 Sama_1915 Shewanella amazonensis SB2B hypothetical protein YP_927790.1 2342098 D 326297 CDS YP_927791.1 119775051 4604166 complement(2342655..2343380) 1 NC_008700.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2343380 4604166 Sama_1916 Shewanella amazonensis SB2B DNA replication initiation factor YP_927791.1 2342655 R 326297 CDS YP_927792.1 119775052 4604167 complement(2343453..2344607) 1 NC_008700.1 KEGG: son:SO2878 hypothetical protein; hypothetical protein 2344607 4604167 Sama_1917 Shewanella amazonensis SB2B hypothetical protein YP_927792.1 2343453 R 326297 CDS YP_927793.1 119775053 4604168 2344815..2346044 1 NC_008700.1 KEGG: sdn:Sden_1641 uracil-xanthine permease; uracil-xanthine permease 2346044 4604168 Sama_1918 Shewanella amazonensis SB2B uracil-xanthine permease YP_927793.1 2344815 D 326297 CDS YP_927794.1 119775054 4604169 complement(2346156..2346488) 1 NC_008700.1 KEGG: sdn:Sden_1640 glutaredoxin-related protein; glutaredoxin-like protein 2346488 4604169 Sama_1919 Shewanella amazonensis SB2B glutaredoxin-like protein YP_927794.1 2346156 R 326297 CDS YP_927795.1 119775055 4604170 2346731..2347315 1 NC_008700.1 KEGG: son:SO2881 superoxide dismutase, Fe; superoxide dismutase 2347315 4604170 Sama_1920 Shewanella amazonensis SB2B superoxide dismutase YP_927795.1 2346731 D 326297 CDS YP_927796.1 119775056 4604171 2347569..2349503 1 NC_008700.1 KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA 2349503 4604171 Sama_1921 Shewanella amazonensis SB2B putative serine protein kinase PrkA YP_927796.1 2347569 D 326297 CDS YP_927797.1 119775057 4604172 2349555..2350826 1 NC_008700.1 KEGG: son:SO2883 hypothetical protein; hypothetical protein 2350826 4604172 Sama_1922 Shewanella amazonensis SB2B hypothetical protein YP_927797.1 2349555 D 326297 CDS YP_927798.1 119775058 4604173 2350836..2352359 1 NC_008700.1 KEGG: son:SO2884 hypothetical protein; SpoVR family protein 2352359 4604173 Sama_1923 Shewanella amazonensis SB2B SpoVR family protein YP_927798.1 2350836 D 326297 CDS YP_927799.1 119775059 4604174 complement(2352404..2353126) 1 NC_008700.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2353126 4604174 Sama_1924 Shewanella amazonensis SB2B fatty acid metabolism regulator YP_927799.1 2352404 R 326297 CDS YP_927800.1 119775060 4604175 2353434..2355020 1 NC_008700.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2355020 nhaB 4604175 nhaB Shewanella amazonensis SB2B sodium/proton antiporter YP_927800.1 2353434 D 326297 CDS YP_927801.1 119775061 4604176 2355121..2355630 1 NC_008700.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2355630 4604176 Sama_1926 Shewanella amazonensis SB2B disulfide bond formation protein B YP_927801.1 2355121 D 326297 CDS YP_927802.1 119775062 4604177 complement(2355706..2356146) 1 NC_008700.1 KEGG: sdn:Sden_1632 uncharacterized conserved protein UCP006173; hypothetical protein 2356146 4604177 Sama_1927 Shewanella amazonensis SB2B hypothetical protein YP_927802.1 2355706 R 326297 CDS YP_927803.1 119775063 4604178 complement(2356191..2357186) 1 NC_008700.1 KEGG: sdn:Sden_1631 membrane-bound lytic murein transglycosylase B; membrane-bound lytic murein transglycosylase B 2357186 4604178 Sama_1928 Shewanella amazonensis SB2B membrane-bound lytic murein transglycosylase B YP_927803.1 2356191 R 326297 CDS YP_927804.1 119775064 4604179 complement(2357226..2357504) 1 NC_008700.1 KEGG: sdn:Sden_1630 protein of unknown function DUF709; hypothetical protein 2357504 4604179 Sama_1929 Shewanella amazonensis SB2B hypothetical protein YP_927804.1 2357226 R 326297 CDS YP_927805.1 119775065 4604180 2357627..2358301 1 NC_008700.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2358301 minC 4604180 minC Shewanella amazonensis SB2B septum formation inhibitor YP_927805.1 2357627 D 326297 CDS YP_927806.1 119775066 4604181 2358331..2359140 1 NC_008700.1 KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD 2359140 4604181 Sama_1931 Shewanella amazonensis SB2B septum site-determining protein MinD YP_927806.1 2358331 D 326297 CDS YP_927807.1 119775067 4604182 2359143..2359400 1 NC_008700.1 KEGG: son:SO2578 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2359400 4604182 Sama_1932 Shewanella amazonensis SB2B cell division topological specificity factor MinE YP_927807.1 2359143 D 326297 CDS YP_927808.1 119775068 4604183 complement(2359614..2360729) 1 NC_008700.1 KEGG: son:SO2580 ribonuclease D; ribonuclease D 2360729 4604183 Sama_1933 Shewanella amazonensis SB2B ribonuclease D YP_927808.1 2359614 R 326297 CDS YP_927809.1 119775069 4604184 complement(2360791..2362467) 1 NC_008700.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2362467 4604184 Sama_1934 Shewanella amazonensis SB2B long-chain-fatty-acid--CoA ligase YP_927809.1 2360791 R 326297 CDS YP_927810.1 119775070 4604185 complement(2362640..2363575) 1 NC_008700.1 KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 2363575 4604185 Sama_1935 Shewanella amazonensis SB2B alpha/beta fold family hydrolase YP_927810.1 2362640 R 326297 CDS YP_927811.1 119775071 4604186 complement(2363746..2364576) 1 NC_008700.1 KEGG: son:SO2583 hypothetical protein; hypothetical protein 2364576 4604186 Sama_1936 Shewanella amazonensis SB2B hypothetical protein YP_927811.1 2363746 R 326297 CDS YP_927812.1 119775072 4604187 complement(2364640..2365350) 1 NC_008700.1 KEGG: son:SO2584 hypothetical protein; hypothetical protein 2365350 4604187 Sama_1937 Shewanella amazonensis SB2B hypothetical protein YP_927812.1 2364640 R 326297 CDS YP_927813.1 119775073 4604188 complement(2365343..2365636) 1 NC_008700.1 hypothetical protein 2365636 4604188 Sama_1938 Shewanella amazonensis SB2B hypothetical protein YP_927813.1 2365343 R 326297 CDS YP_927814.1 119775074 4604189 complement(2365654..2366364) 1 NC_008700.1 KEGG: son:SO2586 hypothetical protein; hypothetical protein 2366364 4604189 Sama_1939 Shewanella amazonensis SB2B hypothetical protein YP_927814.1 2365654 R 326297 CDS YP_927815.1 119775075 4604190 complement(2366483..2368480) 1 NC_008700.1 KEGG: son:SO2081 ATP-dependent helicase, DinG family; ATP-dependent helicase DinG 2368480 4604190 Sama_1940 Shewanella amazonensis SB2B ATP-dependent helicase DinG YP_927815.1 2366483 R 326297 CDS YP_927816.1 119775076 4604191 2368941..2369834 1 NC_008700.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2369834 hisG 4604191 hisG Shewanella amazonensis SB2B ATP phosphoribosyltransferase YP_927816.1 2368941 D 326297 CDS YP_927817.1 119775077 4604192 2369838..2371145 1 NC_008700.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2371145 hisD 4604192 hisD Shewanella amazonensis SB2B histidinol dehydrogenase YP_927817.1 2369838 D 326297 CDS YP_927818.1 119775078 4604193 2371142..2372230 1 NC_008700.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2372230 4604193 Sama_1943 Shewanella amazonensis SB2B histidinol-phosphate aminotransferase YP_927818.1 2371142 D 326297 CDS YP_927819.1 119775079 4604194 2372250..2373317 1 NC_008700.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2373317 4604194 Sama_1944 Shewanella amazonensis SB2B imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_927819.1 2372250 D 326297 CDS YP_927820.1 119775080 4604195 2373317..2374030 1 NC_008700.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2374030 hisH 4604195 hisH Shewanella amazonensis SB2B imidazole glycerol phosphate synthase subunit HisH YP_927820.1 2373317 D 326297 CDS YP_927821.1 119775081 4604196 2374027..2374764 1 NC_008700.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2374764 4604196 Sama_1946 Shewanella amazonensis SB2B 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_927821.1 2374027 D 326297 CDS YP_927822.1 119775082 4604197 2374746..2375525 1 NC_008700.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2375525 4604197 Sama_1947 Shewanella amazonensis SB2B imidazole glycerol phosphate synthase subunit HisF YP_927822.1 2374746 D 326297 CDS YP_927823.1 119775083 4604198 2375532..2376158 1 NC_008700.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2376158 4604198 Sama_1948 Shewanella amazonensis SB2B bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_927823.1 2375532 D 326297 CDS YP_927824.1 119775084 4604199 complement(2376276..2377259) 1 NC_008700.1 KEGG: pfl:PFL_3308 diguanylate cyclase, putative; diguanylate cyclase 2377259 4604199 Sama_1949 Shewanella amazonensis SB2B diguanylate cyclase YP_927824.1 2376276 R 326297 CDS YP_927825.1 119775085 4604200 complement(2377316..2378242) 1 NC_008700.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2378242 4604200 Sama_1950 Shewanella amazonensis SB2B lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_927825.1 2377316 R 326297 CDS YP_927826.1 119775086 4604201 complement(2378324..2378620) 1 NC_008700.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2378620 ihfA 4604201 ihfA Shewanella amazonensis SB2B integration host factor subunit alpha YP_927826.1 2378324 R 326297 CDS YP_927827.1 119775087 4604202 complement(2378624..2381011) 1 NC_008700.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2381011 pheT 4604202 pheT Shewanella amazonensis SB2B phenylalanyl-tRNA synthetase subunit beta YP_927827.1 2378624 R 326297 CDS YP_927828.1 119775088 4604203 complement(2381027..2382010) 1 NC_008700.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2382010 pheS 4604203 pheS Shewanella amazonensis SB2B phenylalanyl-tRNA synthetase subunit alpha YP_927828.1 2381027 R 326297 CDS YP_927829.1 119775089 4604204 2382430..2383944 1 NC_008700.1 KEGG: sdn:Sden_1601 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 2383944 4604204 Sama_1954 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_927829.1 2382430 D 326297 CDS YP_927830.1 119775090 4604205 2384062..2386611 1 NC_008700.1 KEGG: son:SO2889 sensory box histidine kinase; sensory box histidine kinase 2386611 4604205 Sama_1955 Shewanella amazonensis SB2B sensory box histidine kinase YP_927830.1 2384062 D 326297 CDS YP_927831.1 119775091 4604206 complement(2386608..2387477) 1 NC_008700.1 KEGG: sdn:Sden_2273 protein of unknown function DUF785; hypothetical protein 2387477 4604206 Sama_1956 Shewanella amazonensis SB2B hypothetical protein YP_927831.1 2386608 R 326297 CDS YP_927832.1 119775092 4604207 complement(2387582..2387950) 1 NC_008700.1 KEGG: son:SO2890 hypothetical protein; hypothetical protein 2387950 4604207 Sama_1957 Shewanella amazonensis SB2B hypothetical protein YP_927832.1 2387582 R 326297 CDS YP_927833.1 119775093 4604208 complement(2387986..2388336) 1 NC_008700.1 KEGG: son:SO2891 hypothetical protein; hypothetical protein 2388336 4604208 Sama_1958 Shewanella amazonensis SB2B hypothetical protein YP_927833.1 2387986 R 326297 CDS YP_927834.1 119775094 4604209 complement(2388430..2389005) 1 NC_008700.1 KEGG: son:SO2893 hypothetical protein; hypothetical protein 2389005 4604209 Sama_1959 Shewanella amazonensis SB2B hypothetical protein YP_927834.1 2388430 R 326297 CDS YP_927835.1 119775095 4604210 2389189..2389401 1 NC_008700.1 KEGG: plt:Plut_0244 putative cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 2389401 4604210 Sama_1960 Shewanella amazonensis SB2B cold-shock DNA-binding domain-containing protein YP_927835.1 2389189 D 326297 CDS YP_927836.1 119775096 4604211 complement(2389402..2390040) 1 NC_008700.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2390040 4604211 Sama_1961 Shewanella amazonensis SB2B pyridoxamine 5'-phosphate oxidase YP_927836.1 2389402 R 326297 CDS YP_927837.1 119775097 4604212 complement(2390319..2391248) 1 NC_008700.1 KEGG: sdn:Sden_2279 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase 2391248 4604212 Sama_1962 Shewanella amazonensis SB2B adenosylmethionine decarboxylase YP_927837.1 2390319 R 326297 CDS YP_927838.1 119775098 4604213 complement(2391322..2393232) 1 NC_008700.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2393232 4604213 Sama_1963 Shewanella amazonensis SB2B arginine decarboxylase YP_927838.1 2391322 R 326297 CDS YP_927839.1 119775099 4604214 complement(2393261..2394136) 1 NC_008700.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 2394136 4604214 Sama_1964 Shewanella amazonensis SB2B spermidine synthase YP_927839.1 2393261 R 326297 CDS YP_927840.1 119775100 4604215 complement(2394242..2394385) 1 NC_008700.1 KEGG: shm:Shewmr7_1631 hypothetical protein; hypothetical protein 2394385 4604215 Sama_1965 Shewanella amazonensis SB2B hypothetical protein YP_927840.1 2394242 R 326297 CDS YP_927841.1 119775101 4604216 2394886..2395716 1 NC_008700.1 KEGG: son:SO1868 hypothetical protein; hypothetical protein 2395716 4604216 Sama_1966 Shewanella amazonensis SB2B hypothetical protein YP_927841.1 2394886 D 326297 CDS YP_927842.1 119775102 4604217 2395839..2396471 1 NC_008700.1 KEGG: son:SO1867 hypothetical protein; hypothetical protein 2396471 4604217 Sama_1967 Shewanella amazonensis SB2B hypothetical protein YP_927842.1 2395839 D 326297 CDS YP_927843.1 119775103 4604218 2396494..2397333 1 NC_008700.1 KEGG: sdn:Sden_2283 hypothetical protein; hypothetical protein 2397333 4604218 Sama_1968 Shewanella amazonensis SB2B hypothetical protein YP_927843.1 2396494 D 326297 CDS YP_927844.1 119775104 4604219 2397330..2398235 1 NC_008700.1 KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 2398235 4604219 Sama_1969 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_927844.1 2397330 D 326297 CDS YP_927845.1 119775105 4604220 complement(2398716..2398925) 1 NC_008700.1 KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 2398925 4604220 Sama_1970 Shewanella amazonensis SB2B cold-shock DNA-binding domain-containing protein YP_927845.1 2398716 R 326297 CDS YP_927846.1 119775106 4604221 complement(2399213..2400052) 1 NC_008700.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2400052 rrmA 4604221 rrmA Shewanella amazonensis SB2B 23S rRNA methyltransferase A YP_927846.1 2399213 R 326297 CDS YP_927847.1 119775107 4604222 complement(2400052..2400954) 1 NC_008700.1 KEGG: son:SO2789 hypothetical protein; hypothetical protein 2400954 4604222 Sama_1972 Shewanella amazonensis SB2B hypothetical protein YP_927847.1 2400052 R 326297 CDS YP_927848.1 119775108 4604223 2401157..2402569 1 NC_008700.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2402569 sbcB 4604223 sbcB Shewanella amazonensis SB2B exonuclease I YP_927848.1 2401157 D 326297 CDS YP_927849.1 119775109 4604224 2402667..2403557 1 NC_008700.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2403557 4604224 Sama_1974 Shewanella amazonensis SB2B cytidine deaminase YP_927849.1 2402667 D 326297 CDS YP_927850.1 119775110 4604225 complement(2403659..2404534) 1 NC_008700.1 KEGG: sdn:Sden_2289 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 2404534 4604225 Sama_1975 Shewanella amazonensis SB2B 2-hydroxy-3-oxopropionate reductase YP_927850.1 2403659 R 326297 CDS YP_927851.1 119775111 4604226 complement(2404559..2406097) 1 NC_008700.1 KEGG: rfr:Rfer_2334 carbohydrate kinase, FGGY; carbohydrate kinase 2406097 4604226 Sama_1976 Shewanella amazonensis SB2B carbohydrate kinase YP_927851.1 2404559 R 326297 CDS YP_927852.1 119775112 4604227 complement(2406187..2406666) 1 NC_008700.1 KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; cytosolic long-chain acyl-CoA thioester hydrolase family protein 2406666 4604227 Sama_1977 Shewanella amazonensis SB2B cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_927852.1 2406187 R 326297 CDS YP_927853.1 119775113 4604228 complement(2406797..2408035) 1 NC_008700.1 KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase II 2408035 4604228 Sama_1978 Shewanella amazonensis SB2B 3-oxoacyl-(acyl-carrier-protein) synthase II YP_927853.1 2406797 R 326297 CDS YP_927854.1 119775114 4604229 complement(2408197..2408430) 1 NC_008700.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2408430 acpP 4604229 acpP Shewanella amazonensis SB2B acyl carrier protein YP_927854.1 2408197 R 326297 CDS YP_927855.1 119775115 4604230 complement(2408589..2409335) 1 NC_008700.1 KEGG: sdn:Sden_2293 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2409335 4604230 Sama_1980 Shewanella amazonensis SB2B 3-oxoacyl-(acyl-carrier-protein) reductase YP_927855.1 2408589 R 326297 CDS YP_927856.1 119775116 4604231 complement(2409347..2410273) 1 NC_008700.1 KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2410273 4604231 Sama_1981 Shewanella amazonensis SB2B malonyl CoA-acyl carrier protein transacylase YP_927856.1 2409347 R 326297 CDS YP_927857.1 119775117 4604232 complement(2410331..2411290) 1 NC_008700.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2411290 4604232 Sama_1982 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_927857.1 2410331 R 326297 CDS YP_927858.1 119775118 4604233 complement(2411305..2412333) 1 NC_008700.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2412333 4604233 Sama_1983 Shewanella amazonensis SB2B putative glycerol-3-phosphate acyltransferase PlsX YP_927858.1 2411305 R 326297 CDS YP_927859.1 119775119 4604234 complement(2412348..2412518) 1 NC_008700.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2412518 rpmF 4604234 rpmF Shewanella amazonensis SB2B 50S ribosomal protein L32 YP_927859.1 2412348 R 326297 CDS YP_927860.1 119775120 4604235 complement(2412535..2413059) 1 NC_008700.1 KEGG: son:SO2781 hypothetical protein; hypothetical protein 2413059 4604235 Sama_1985 Shewanella amazonensis SB2B hypothetical protein YP_927860.1 2412535 R 326297 CDS YP_927861.1 119775121 4604236 2413483..2414082 1 NC_008700.1 KEGG: cps:CPS_2292 septum formation protein Maf; septum formation protein Maf 2414082 4604236 Sama_1986 Shewanella amazonensis SB2B septum formation protein Maf YP_927861.1 2413483 D 326297 CDS YP_927862.1 119775122 4604237 complement(2414311..2414958) 1 NC_008700.1 KEGG: sdn:Sden_2300 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 2414958 4604237 Sama_1987 Shewanella amazonensis SB2B HAD family hydrolase YP_927862.1 2414311 R 326297 CDS YP_927863.1 119775123 4604238 complement(2414958..2415950) 1 NC_008700.1 KEGG: sdn:Sden_2301 pseudouridine synthase, RluD; pseudouridylate synthase 2415950 4604238 Sama_1988 Shewanella amazonensis SB2B pseudouridylate synthase YP_927863.1 2414958 R 326297 CDS YP_927864.1 119775124 4604239 2416434..2419859 1 NC_008700.1 KEGG: son:SO2785 ribonuclease E; ribonuclease E 2419859 4604239 Sama_1989 Shewanella amazonensis SB2B ribonuclease E YP_927864.1 2416434 D 326297 CDS YP_927865.1 119775125 4604240 2420051..2421607 1 NC_008700.1 KEGG: sdn:Sden_2303 sulphate transporter; sulfate transporter 2421607 4604240 Sama_1990 Shewanella amazonensis SB2B sulfate transporter YP_927865.1 2420051 D 326297 CDS YP_927866.1 119775126 4604241 complement(2421680..2422609) 1 NC_008700.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2422609 4604241 Sama_1991 Shewanella amazonensis SB2B bifunctional methionine sulfoxide reductase B/A protein YP_927866.1 2421680 R 326297 CDS YP_927867.1 119775127 4604242 2422789..2423628 1 NC_008700.1 KEGG: son:SO2589 isopenicillin-N synthase; isopenicillin-N synthase 2423628 4604242 Sama_1992 Shewanella amazonensis SB2B isopenicillin-N synthase YP_927867.1 2422789 D 326297 CDS YP_927868.1 119775128 4604243 2423727..2424671 1 NC_008700.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2424671 rbgA 4604243 rbgA Shewanella amazonensis SB2B ribosomal biogenesis GTPase YP_927868.1 2423727 D 326297 CDS YP_927869.1 119775129 4604244 complement(2424820..2425296) 1 NC_008700.1 KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2425296 4604244 Sama_1994 Shewanella amazonensis SB2B protein tyrosine phosphatase YP_927869.1 2424820 R 326297 CDS YP_927870.1 119775130 4604245 complement(2425326..2426174) 1 NC_008700.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2426174 4604245 Sama_1995 Shewanella amazonensis SB2B DNA ligase YP_927870.1 2425326 R 326297 CDS YP_927871.1 119775131 4604246 2426623..2426994 1 NC_008700.1 KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase 2426994 4604246 Sama_1996 Shewanella amazonensis SB2B diacylglycerol kinase YP_927871.1 2426623 D 326297 CDS YP_927872.1 119775132 4604247 complement(2427012..2427884) 1 NC_008700.1 KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 2427884 4604247 Sama_1997 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_927872.1 2427012 R 326297 CDS YP_927873.1 119775133 4604248 2428020..2428457 1 NC_008700.1 KEGG: son:SO2201 hypothetical protein; hypothetical protein 2428457 4604248 Sama_1998 Shewanella amazonensis SB2B hypothetical protein YP_927873.1 2428020 D 326297 CDS YP_927874.1 119775134 4604249 2428478..2429407 1 NC_008700.1 KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; ribosomal protein S6 modification protein 2429407 4604249 Sama_1999 Shewanella amazonensis SB2B ribosomal protein S6 modification protein YP_927874.1 2428478 D 326297 CDS YP_927875.1 119775135 4604250 2429593..2430453 1 NC_008700.1 KEGG: son:SO2199 hypothetical protein; hypothetical protein 2430453 4604250 Sama_2000 Shewanella amazonensis SB2B hypothetical protein YP_927875.1 2429593 D 326297 CDS YP_927876.1 119775136 4604251 2430742..2431785 1 NC_008700.1 KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 2431785 4604251 Sama_2001 Shewanella amazonensis SB2B diguanylate cyclase YP_927876.1 2430742 D 326297 CDS YP_927877.1 119775137 4604252 complement(2431772..2432416) 1 NC_008700.1 KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase 2432416 4604252 Sama_2002 Shewanella amazonensis SB2B sortase YP_927877.1 2431772 R 326297 CDS YP_927878.1 119775138 4604253 complement(2432403..2434664) 1 NC_008700.1 KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; inter-alpha-trypsin inhibitor domain-containing protein 2434664 4604253 Sama_2003 Shewanella amazonensis SB2B inter-alpha-trypsin inhibitor domain-containing protein YP_927878.1 2432403 R 326297 CDS YP_927879.1 119775139 4604254 complement(2434710..2435432) 1 NC_008700.1 KEGG: ppr:PBPRB0759 hypothetical OmpA family protein; OmpA family protein 2435432 4604254 Sama_2004 Shewanella amazonensis SB2B OmpA family protein YP_927879.1 2434710 R 326297 CDS YP_927880.1 119775140 4604255 2435671..2436366 1 NC_008700.1 KEGG: son:SO2193 DNA-binding response regulator; response regulator receiver protein 2436366 4604255 Sama_2005 Shewanella amazonensis SB2B response regulator receiver protein YP_927880.1 2435671 D 326297 CDS YP_927881.1 119775141 4604256 2436363..2438522 1 NC_008700.1 KEGG: son:SO2192 sensor histidine kinase; sensor histidine kinase 2438522 4604256 Sama_2006 Shewanella amazonensis SB2B sensor histidine kinase YP_927881.1 2436363 D 326297 CDS YP_927882.1 119775142 4604257 2438680..2439681 1 NC_008700.1 KEGG: sma:SAV2545 hypothetical protein; hypothetical protein 2439681 4604257 Sama_2007 Shewanella amazonensis SB2B hypothetical protein YP_927882.1 2438680 D 326297 CDS YP_927883.1 119775143 4604258 2439769..2440974 1 NC_008700.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2440974 4604258 Sama_2008 Shewanella amazonensis SB2B cystathionine beta-lyase YP_927883.1 2439769 D 326297 CDS YP_927884.1 119775144 4604259 complement(2441141..2441635) 1 NC_008700.1 KEGG: son:SO2190 creA protein; creA protein 2441635 4604259 Sama_2009 Shewanella amazonensis SB2B creA protein YP_927884.1 2441141 R 326297 CDS YP_927885.1 119775145 4604260 complement(2441656..2443008) 1 NC_008700.1 KEGG: son:SO2189 conserved hypothetical protein; putative chaperone 2443008 4604260 Sama_2010 Shewanella amazonensis SB2B putative chaperone YP_927885.1 2441656 R 326297 CDS YP_927886.1 119775146 4604261 2443352..2445544 1 NC_008700.1 KEGG: vvu:VV10464 polyphosphate kinase; polyphosphate kinase 2445544 4604261 Sama_2011 Shewanella amazonensis SB2B polyphosphate kinase YP_927886.1 2443352 D 326297 CDS YP_927887.1 119775147 4604262 2445564..2447072 1 NC_008700.1 KEGG: son:SO2185 exopolyphosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase 2447072 4604262 Sama_2012 Shewanella amazonensis SB2B guanosine-5'-triphosphate,3'-diphosphate diphosphatase YP_927887.1 2445564 D 326297 CDS YP_927888.1 119775148 4604263 2447479..2447676 1 NC_008700.1 KEGG: shm:Shewmr7_1836 hypothetical protein; hypothetical protein 2447676 4604263 Sama_2013 Shewanella amazonensis SB2B hypothetical protein YP_927888.1 2447479 D 326297 CDS YP_927889.1 119775149 4604264 complement(2447718..2449496) 1 NC_008700.1 KEGG: son:SO2286 sulfate permease family protein; sulfate permease family protein 2449496 4604264 Sama_2014 Shewanella amazonensis SB2B sulfate permease family protein YP_927889.1 2447718 R 326297 CDS YP_927890.1 119775150 4604265 complement(2449561..2450169) 1 NC_008700.1 KEGG: son:SO2285 hypothetical protein; hypothetical protein 2450169 4604265 Sama_2015 Shewanella amazonensis SB2B hypothetical protein YP_927890.1 2449561 R 326297 CDS YP_927891.1 119775151 4604266 2450269..2451612 1 NC_008700.1 KEGG: son:SO2282 transcriptional regulator, GntR family; GntR family transcriptional regulator 2451612 4604266 Sama_2016 Shewanella amazonensis SB2B GntR family transcriptional regulator YP_927891.1 2450269 D 326297 CDS YP_927892.1 119775152 4604267 2451798..2453003 1 NC_008700.1 KEGG: son:SO2280 bicyclomycin resistance protein; bicyclomycin resistance protein 2453003 4604267 Sama_2017 Shewanella amazonensis SB2B bicyclomycin resistance protein YP_927892.1 2451798 D 326297 CDS YP_927893.1 119775153 4604268 2453387..2455108 1 NC_008700.1 KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2455108 4604268 Sama_2018 Shewanella amazonensis SB2B acetolactate synthase 3 catalytic subunit YP_927893.1 2453387 D 326297 CDS YP_927894.1 119775154 4604269 2455108..2455602 1 NC_008700.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2455602 ilvH 4604269 ilvH Shewanella amazonensis SB2B acetolactate synthase 3 regulatory subunit YP_927894.1 2455108 D 326297 CDS YP_927895.1 119775155 4604270 complement(2455710..2456153) 1 NC_008700.1 KEGG: son:SO2277 16 kDa heat shock protein A; 16 kDa heat shock protein A 2456153 4604270 Sama_2020 Shewanella amazonensis SB2B 16 kDa heat shock protein A YP_927895.1 2455710 R 326297 CDS YP_927896.1 119775156 4604271 complement(2456354..2458069) 1 NC_008700.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2458069 ushA 4604271 ushA Shewanella amazonensis SB2B bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_927896.1 2456354 R 326297 CDS YP_927897.1 119775157 4604272 complement(2458429..2459109) 1 NC_008700.1 KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase 2459109 4604272 Sama_2022 Shewanella amazonensis SB2B carboxylesterase YP_927897.1 2458429 R 326297 CDS YP_927898.1 119775158 4604273 complement(2459113..2459343) 1 NC_008700.1 KEGG: sdn:Sden_2139 hypothetical protein; hypothetical protein 2459343 4604273 Sama_2023 Shewanella amazonensis SB2B hypothetical protein YP_927898.1 2459113 R 326297 CDS YP_927899.1 119775159 4604274 2459353..2460354 1 NC_008700.1 KEGG: bce:BC1379 gentamicin resistance protein; hypothetical protein 2460354 4604274 Sama_2024 Shewanella amazonensis SB2B hypothetical protein YP_927899.1 2459353 D 326297 CDS YP_927900.1 119775160 4604275 complement(2460445..2462355) 1 NC_008700.1 KEGG: eli:ELI_01445 prolyl oligopeptidase family protein; prolyl oligopeptidase family protein 2462355 4604275 Sama_2025 Shewanella amazonensis SB2B prolyl oligopeptidase family protein YP_927900.1 2460445 R 326297 CDS YP_927901.1 119775161 4604276 complement(2462458..2465664) 1 NC_008700.1 KEGG: eli:ELI_01440 TonB-dependent receptor; TonB-dependent receptor 2465664 4604276 Sama_2026 Shewanella amazonensis SB2B TonB-dependent receptor YP_927901.1 2462458 R 326297 CDS YP_927902.1 119775162 4604277 complement(2466286..2466768) 1 NC_008700.1 KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 2466768 4604277 Sama_2027 Shewanella amazonensis SB2B peptidylprolyl isomerase, FKBP-type YP_927902.1 2466286 R 326297 CDS YP_927903.1 119775163 4604278 complement(2466863..2467735) 1 NC_008700.1 KEGG: noc:Noc_0660 hypothetical protein; hypothetical protein 2467735 4604278 Sama_2028 Shewanella amazonensis SB2B hypothetical protein YP_927903.1 2466863 R 326297 CDS YP_927904.1 119775164 4604279 complement(2467794..2468999) 1 NC_008700.1 KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; membrane-bound lytic transglycosylase-like protein 2468999 4604279 Sama_2029 Shewanella amazonensis SB2B membrane-bound lytic transglycosylase-like protein YP_927904.1 2467794 R 326297 CDS YP_927905.1 119775165 4604280 2469214..2469573 1 NC_008700.1 KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 2469573 4604280 Sama_2030 Shewanella amazonensis SB2B hypothetical protein YP_927905.1 2469214 D 326297 CDS YP_927906.1 119775166 4604281 2469570..2470208 1 NC_008700.1 KEGG: son:SO1990 hypothetical protein; hypothetical protein 2470208 4604281 Sama_2031 Shewanella amazonensis SB2B hypothetical protein YP_927906.1 2469570 D 326297 CDS YP_927907.1 119775167 4604282 complement(2470301..2471317) 1 NC_008700.1 KEGG: son:SO1989 chemotaxis protein CheV; chemotaxis protein CheV 2471317 4604282 Sama_2032 Shewanella amazonensis SB2B chemotaxis protein CheV YP_927907.1 2470301 R 326297 CDS YP_927908.1 119775168 4604283 2471450..2471980 1 NC_008700.1 KEGG: son:SO1691 lipoprotein Blc; lipoprotein Blc 2471980 4604283 Sama_2033 Shewanella amazonensis SB2B lipoprotein Blc YP_927908.1 2471450 D 326297 CDS YP_927909.1 119775169 4604284 complement(2471973..2472581) 1 NC_008700.1 KEGG: son:SO1988 hypothetical methyltransferase; methyltransferase 2472581 4604284 Sama_2034 Shewanella amazonensis SB2B methyltransferase YP_927909.1 2471973 R 326297 CDS YP_927910.1 119775170 4604285 2472727..2473281 1 NC_008700.1 KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; ATP-dependent protease La 2473281 4604285 Sama_2035 Shewanella amazonensis SB2B ATP-dependent protease La YP_927910.1 2472727 D 326297 CDS YP_927911.1 119775171 4604286 2473361..2474008 1 NC_008700.1 KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2474008 4604286 Sama_2036 Shewanella amazonensis SB2B ECF subfamily RNA polymerase sigma-24 factor YP_927911.1 2473361 D 326297 CDS YP_927912.1 119775172 4604287 2474001..2474789 1 NC_008700.1 KEGG: son:SO1985 transcriptional activator, putative; anti-ECF sigma factor ChrR 2474789 4604287 Sama_2037 Shewanella amazonensis SB2B anti-ECF sigma factor ChrR YP_927912.1 2474001 D 326297 CDS YP_927913.1 119775173 4604288 complement(2474861..2476087) 1 NC_008700.1 KEGG: son:SO2607 spore maturation protein A-related protein; spore maturation protein A-like protein 2476087 4604288 Sama_2038 Shewanella amazonensis SB2B spore maturation protein A-like protein YP_927913.1 2474861 R 326297 CDS YP_927914.1 119775174 4604289 2476168..2477571 1 NC_008700.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2477571 yebU 4604289 yebU Shewanella amazonensis SB2B rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_927914.1 2476168 D 326297 CDS YP_927915.1 119775175 4604290 complement(2477769..2478557) 1 NC_008700.1 KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase 2478557 4604290 Sama_2040 Shewanella amazonensis SB2B TatD family hydrolase YP_927915.1 2477769 R 326297 CDS YP_927916.1 119775176 4604291 complement(2478603..2478929) 1 NC_008700.1 KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ 2478929 4604291 Sama_2041 Shewanella amazonensis SB2B type IV pilus biogenesis protein pilZ YP_927916.1 2478603 R 326297 CDS YP_927917.1 119775177 4604292 complement(2478933..2479847) 1 NC_008700.1 KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase 2479847 4604292 Sama_2042 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_927917.1 2478933 R 326297 CDS YP_927918.1 119775178 4604293 complement(2479863..2480489) 1 NC_008700.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2480489 tmk 4604293 tmk Shewanella amazonensis SB2B thymidylate kinase YP_927918.1 2479863 R 326297 CDS YP_927919.1 119775179 4604294 complement(2480486..2481460) 1 NC_008700.1 KEGG: son:SO2614 conserved hypothetical protein TIGR00247; hypothetical protein 2481460 4604294 Sama_2044 Shewanella amazonensis SB2B hypothetical protein YP_927919.1 2480486 R 326297 CDS YP_927920.1 119775180 4604295 complement(2481493..2482383) 1 NC_008700.1 KEGG: sdn:Sden_2053 aminotransferase, class IV; aminodeoxychorismate lyase 2482383 4604295 Sama_2045 Shewanella amazonensis SB2B aminodeoxychorismate lyase YP_927920.1 2481493 R 326297 CDS YP_927921.1 119775181 4604296 complement(2482392..2482976) 1 NC_008700.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2482976 dcd 4604296 dcd Shewanella amazonensis SB2B deoxycytidine triphosphate deaminase YP_927921.1 2482392 R 326297 CDS YP_927922.1 119775182 4604297 complement(2483007..2483645) 1 NC_008700.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2483645 4604297 Sama_2047 Shewanella amazonensis SB2B uridine kinase YP_927922.1 2483007 R 326297 CDS YP_927923.1 119775183 4604298 complement(2483658..2484770) 1 NC_008700.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2484770 4604298 Sama_2048 Shewanella amazonensis SB2B ATP-binding Mrp/Nbp35 family protein YP_927923.1 2483658 R 326297 CDS YP_927924.1 119775184 4604299 2484933..2486960 1 NC_008700.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2486960 metG 4604299 metG Shewanella amazonensis SB2B methionyl-tRNA synthetase YP_927924.1 2484933 D 326297 CDS YP_927925.1 119775185 4604300 complement(2487031..2487780) 1 NC_008700.1 KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2487780 4604300 Sama_2050 Shewanella amazonensis SB2B hypothetical protein YP_927925.1 2487031 R 326297 CDS YP_927926.1 119775186 4604301 2487965..2488369 1 NC_008700.1 KEGG: sdn:Sden_2074 hypothetical protein; hypothetical protein 2488369 4604301 Sama_2051 Shewanella amazonensis SB2B hypothetical protein YP_927926.1 2487965 D 326297 CDS YP_927927.1 119775187 4604302 complement(2488462..2488929) 1 NC_008700.1 KEGG: son:SO2622 hypothetical protein; hypothetical protein 2488929 4604302 Sama_2052 Shewanella amazonensis SB2B hypothetical protein YP_927927.1 2488462 R 326297 CDS YP_927928.1 119775188 4604303 2488981..2489691 1 NC_008700.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2489691 aat 4604303 aat Shewanella amazonensis SB2B leucyl/phenylalanyl-tRNA--protein transferase YP_927928.1 2488981 D 326297 CDS YP_927929.1 119775189 4604304 2489681..2490394 1 NC_008700.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2490394 4604304 Sama_2054 Shewanella amazonensis SB2B arginyl-tRNA-protein transferase YP_927929.1 2489681 D 326297 CDS YP_927930.1 119775190 4604305 2490505..2490723 1 NC_008700.1 KEGG: son:SO2625 translation initiation factor IF-1; translation initiation factor IF-1 2490723 4604305 Sama_2055 Shewanella amazonensis SB2B translation initiation factor IF-1 YP_927930.1 2490505 D 326297 CDS YP_927931.1 119775191 4604306 complement(2490792..2493053) 1 NC_008700.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; ATP-dependent Clp protease, ATP-binding subunit ClpA 2493053 4604306 Sama_2056 Shewanella amazonensis SB2B ATP-dependent Clp protease, ATP-binding subunit ClpA YP_927931.1 2490792 R 326297 CDS YP_927932.1 119775192 4604307 complement(2493102..2493410) 1 NC_008700.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2493410 clpS 4604307 clpS Shewanella amazonensis SB2B ATP-dependent Clp protease adaptor protein ClpS YP_927932.1 2493102 R 326297 CDS YP_927933.1 119775193 4604308 2493616..2493822 1 NC_008700.1 KEGG: son:SO2628 stress response protein CspD; cold-shock DNA-binding domain-containing protein 2493822 4604308 Sama_2058 Shewanella amazonensis SB2B cold-shock DNA-binding domain-containing protein YP_927933.1 2493616 D 326297 CDS YP_927934.1 119775194 4604309 complement(2493959..2496184) 1 NC_008700.1 KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase (NADP(+)) 2496184 4604309 Sama_2059 Shewanella amazonensis SB2B isocitrate dehydrogenase (NADP(+)) YP_927934.1 2493959 R 326297 CDS YP_927935.1 119775195 4604310 2496625..2497263 1 NC_008700.1 KEGG: sdn:Sden_1830 pseudouridine synthase, Rsu; pseudouridylate synthase 2497263 4604310 Sama_2060 Shewanella amazonensis SB2B pseudouridylate synthase YP_927935.1 2496625 D 326297 CDS YP_927936.1 119775196 4604311 2497285..2497758 1 NC_008700.1 KEGG: son:SO2631 MutT/nudix family protein; MutT/nudix family protein 2497758 4604311 Sama_2061 Shewanella amazonensis SB2B MutT/nudix family protein YP_927936.1 2497285 D 326297 CDS YP_927937.1 119775197 4604312 2497940..2499073 1 NC_008700.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2499073 mnmA 4604312 mnmA Shewanella amazonensis SB2B tRNA-specific 2-thiouridylase MnmA YP_927937.1 2497940 D 326297 CDS YP_927938.1 119775198 4604313 2499077..2499691 1 NC_008700.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2499691 4604313 Sama_2063 Shewanella amazonensis SB2B hypothetical protein YP_927938.1 2499077 D 326297 CDS YP_927939.1 119775199 4604314 2499725..2501095 1 NC_008700.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2501095 4604314 Sama_2064 Shewanella amazonensis SB2B adenylosuccinate lyase YP_927939.1 2499725 D 326297 CDS YP_927940.1 119775200 4604315 2501148..2502266 1 NC_008700.1 KEGG: sdn:Sden_1825 cupin 4; cupin 4 2502266 4604315 Sama_2065 Shewanella amazonensis SB2B cupin 4 YP_927940.1 2501148 D 326297 CDS YP_927941.1 119775201 4604316 complement(2502391..2502834) 1 NC_008700.1 KEGG: sdn:Sden_1824 hypothetical protein; hypothetical protein 2502834 4604316 Sama_2066 Shewanella amazonensis SB2B hypothetical protein YP_927941.1 2502391 R 326297 CDS YP_927942.1 119775202 4604317 2503088..2504122 1 NC_008700.1 KEGG: son:SO2638 leucine dehydrogenase; leucine dehydrogenase 2504122 4604317 Sama_2067 Shewanella amazonensis SB2B leucine dehydrogenase YP_927942.1 2503088 D 326297 CDS YP_927943.1 119775203 4604318 2504335..2504682 1 NC_008700.1 KEGG: son:SO2639 hypothetical protein; hypothetical protein 2504682 4604318 Sama_2068 Shewanella amazonensis SB2B hypothetical protein YP_927943.1 2504335 D 326297 CDS YP_927944.1 119775204 4604319 complement(2504835..2505251) 1 NC_008700.1 KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator 2505251 4604319 Sama_2069 Shewanella amazonensis SB2B MarR family transcriptional regulator YP_927944.1 2504835 R 326297 CDS YP_927945.1 119775205 4604320 complement(2505349..2505834) 1 NC_008700.1 KEGG: sdn:Sden_2007 hypothetical protein; hypothetical protein 2505834 4604320 Sama_2070 Shewanella amazonensis SB2B hypothetical protein YP_927945.1 2505349 R 326297 CDS YP_927946.1 119775206 4604321 complement(2505974..2508997) 1 NC_008700.1 KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; oxidoreductase, FAD-binding 2508997 4604321 Sama_2071 Shewanella amazonensis SB2B oxidoreductase, FAD-binding YP_927946.1 2505974 R 326297 CDS YP_927947.1 119775207 4604322 complement(2509179..2511548) 1 NC_008700.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2511548 4604322 Sama_2072 Shewanella amazonensis SB2B phosphoenolpyruvate synthase YP_927947.1 2509179 R 326297 CDS YP_927948.1 119775208 4604323 2511673..2512485 1 NC_008700.1 KEGG: son:SO2645 hypothetical protein; hypothetical protein 2512485 4604323 Sama_2073 Shewanella amazonensis SB2B hypothetical protein YP_927948.1 2511673 D 326297 CDS YP_927949.1 119775209 4604324 2512636..2513697 1 NC_008700.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2513697 4604324 Sama_2074 Shewanella amazonensis SB2B phospho-2-dehydro-3-deoxyheptonate aldolase YP_927949.1 2512636 D 326297 CDS YP_927950.1 119775210 4604325 2513940..2514365 1 NC_008700.1 KEGG: sdn:Sden_2107 thioesterase superfamily; thioesterase superfamily protein 2514365 4604325 Sama_2075 Shewanella amazonensis SB2B thioesterase superfamily protein YP_927950.1 2513940 D 326297 CDS YP_927951.1 119775211 4604326 2514520..2515236 1 NC_008700.1 KEGG: son:SO2648 DNA-binding response regulator, LuxR family; response regulator receiver protein 2515236 4604326 Sama_2076 Shewanella amazonensis SB2B response regulator receiver protein YP_927951.1 2514520 D 326297 CDS YP_927952.1 119775212 4604327 complement(2515300..2516589) 1 NC_008700.1 KEGG: son:SO2052 hypothetical oxidoreductase; oxidoreductase 2516589 4604327 Sama_2077 Shewanella amazonensis SB2B oxidoreductase YP_927952.1 2515300 R 326297 CDS YP_927953.1 119775213 4604328 complement(2516754..2520179) 1 NC_008700.1 KEGG: son:SO2742 sensor histidine kinase/response regulator; sensor histidine kinase/response regulator 2520179 4604328 Sama_2078 Shewanella amazonensis SB2B sensor histidine kinase/response regulator YP_927953.1 2516754 R 326297 CDS YP_927954.1 119775214 4604329 2520358..2522310 1 NC_008700.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2522310 4604329 Sama_2079 Shewanella amazonensis SB2B acetyl-CoA synthetase YP_927954.1 2520358 D 326297 CDS YP_927955.1 119775215 4604330 2522415..2524181 1 NC_008700.1 KEGG: son:SO2744 helicase; helicase 2524181 4604330 Sama_2080 Shewanella amazonensis SB2B helicase YP_927955.1 2522415 D 326297 CDS YP_927956.1 119775216 4604331 2524255..2524515 1 NC_008700.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2524515 grxA 4604331 grxA Shewanella amazonensis SB2B glutaredoxin YP_927956.1 2524255 D 326297 CDS YP_927957.1 119775217 4604332 2524637..2525947 1 NC_008700.1 KEGG: sdn:Sden_2545 ATP-binding region, ATPase-like protein; Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein 2525947 4604332 Sama_2082 Shewanella amazonensis SB2B Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein YP_927957.1 2524637 D 326297 CDS YP_927958.1 119775218 4604333 complement(2526023..2527171) 1 NC_008700.1 KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein 2527171 4604333 Sama_2083 Shewanella amazonensis SB2B hypothetical protein YP_927958.1 2526023 R 326297 CDS YP_927959.1 119775219 4605987 complement(2528286..2529050) 1 NC_008700.1 KEGG: son:SO2746 hypothetical protein; hypothetical protein 2529050 4605987 Sama_2084 Shewanella amazonensis SB2B hypothetical protein YP_927959.1 2528286 R 326297 CDS YP_927960.1 119775220 4604335 complement(2529076..2529612) 1 NC_008700.1 KEGG: son:SO2747 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 2529612 4604335 Sama_2085 Shewanella amazonensis SB2B peptidoglycan-associated lipoprotein YP_927960.1 2529076 R 326297 CDS YP_927961.1 119775221 4604336 complement(2529649..2530974) 1 NC_008700.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2530974 tolB 4604336 tolB Shewanella amazonensis SB2B translocation protein TolB YP_927961.1 2529649 R 326297 CDS YP_927962.1 119775222 4604337 complement(2530984..2531967) 1 NC_008700.1 KEGG: sdn:Sden_1393 TolA; hypothetical protein 2531967 4604337 Sama_2087 Shewanella amazonensis SB2B hypothetical protein YP_927962.1 2530984 R 326297 CDS YP_927963.1 119775223 4604338 complement(2531972..2532409) 1 NC_008700.1 KEGG: son:SO2750 tolR protein; tolR protein 2532409 4604338 Sama_2088 Shewanella amazonensis SB2B tolR protein YP_927963.1 2531972 R 326297 CDS YP_927964.1 119775224 4604339 complement(2532409..2533098) 1 NC_008700.1 KEGG: sdn:Sden_1391 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2533098 4604339 Sama_2089 Shewanella amazonensis SB2B MotA/TolQ/ExbB proton channel YP_927964.1 2532409 R 326297 CDS YP_927965.1 119775225 4604340 complement(2533088..2533489) 1 NC_008700.1 KEGG: son:SO2752 conserved hypothetical protein TIGR00051; hypothetical protein 2533489 4604340 Sama_2090 Shewanella amazonensis SB2B hypothetical protein YP_927965.1 2533088 R 326297 CDS YP_927966.1 119775226 4604341 complement(2533646..2535802) 1 NC_008700.1 KEGG: son:SO2753 prolyl endopeptidase; prolyl oligopeptidase 2535802 4604341 Sama_2091 Shewanella amazonensis SB2B prolyl oligopeptidase YP_927966.1 2533646 R 326297 CDS YP_927967.1 119775227 4604342 complement(2536350..2537219) 1 NC_008700.1 KEGG: sdn:Sden_1398 OmpA/MotB; OmpA/MotB protein 2537219 4604342 Sama_2092 Shewanella amazonensis SB2B OmpA/MotB protein YP_927967.1 2536350 R 326297 CDS YP_927968.1 119775228 4604343 2537303..2538079 1 NC_008700.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2538079 4604343 Sama_2093 Shewanella amazonensis SB2B ribonuclease T YP_927968.1 2537303 D 326297 CDS YP_927969.1 119775229 4604344 complement(2538204..2538809) 1 NC_008700.1 KEGG: sdn:Sden_2091 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen 2538809 4604344 Sama_2094 Shewanella amazonensis SB2B alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_927969.1 2538204 R 326297 CDS YP_927970.1 119775230 4604345 2539113..2540435 1 NC_008700.1 KEGG: son:SO2757 membrane protein, putative; hypothetical protein 2540435 4604345 Sama_2095 Shewanella amazonensis SB2B hypothetical protein YP_927970.1 2539113 D 326297 CDS YP_927971.1 119775231 4604346 complement(2540524..2541150) 1 NC_008700.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2541150 upp 4604346 upp Shewanella amazonensis SB2B uracil phosphoribosyltransferase YP_927971.1 2540524 R 326297 CDS YP_927972.1 119775232 4604347 2541383..2542420 1 NC_008700.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2542420 4604347 Sama_2097 Shewanella amazonensis SB2B phosphoribosylaminoimidazole synthetase YP_927972.1 2541383 D 326297 CDS YP_927973.1 119775233 4604348 2542420..2543058 1 NC_008700.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2543058 purN 4604348 purN Shewanella amazonensis SB2B phosphoribosylglycinamide formyltransferase YP_927973.1 2542420 D 326297 CDS YP_927974.1 119775234 4604349 2543313..2544059 1 NC_008700.1 KEGG: son:SO2762 nagD protein; UMP phosphatase 2544059 4604349 Sama_2099 Shewanella amazonensis SB2B UMP phosphatase YP_927974.1 2543313 D 326297 CDS YP_927975.1 119775235 4604350 2544262..2545890 1 NC_008700.1 KEGG: son:SO2766 hypothetical protein; hypothetical protein 2545890 4604350 Sama_2100 Shewanella amazonensis SB2B hypothetical protein YP_927975.1 2544262 D 326297 CDS YP_927976.1 119775236 4604351 2546210..2547874 1 NC_008700.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2547874 asnB 4604351 asnB Shewanella amazonensis SB2B asparagine synthetase B YP_927976.1 2546210 D 326297 CDS YP_927977.1 119775237 4604352 complement(2548010..2548204) 1 NC_008700.1 KEGG: sfr:Sfri_1599 protein of unknown function DUF1289; hypothetical protein 2548204 4604352 Sama_2102 Shewanella amazonensis SB2B hypothetical protein YP_927977.1 2548010 R 326297 CDS YP_927978.1 119775238 4604353 complement(2548206..2548547) 1 NC_008700.1 KEGG: cvi:CV0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; putative 5-carboxymethyl-2-hydroxymuconate D-isomerase 2548547 4604353 Sama_2103 Shewanella amazonensis SB2B putative 5-carboxymethyl-2-hydroxymuconate D-isomerase YP_927978.1 2548206 R 326297 CDS YP_927979.1 119775239 4604354 complement(2548556..2548903) 1 NC_008700.1 KEGG: sdn:Sden_2036 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2548903 4604354 Sama_2104 Shewanella amazonensis SB2B glyoxalase/bleomycin resistance protein/dioxygenase YP_927979.1 2548556 R 326297 CDS YP_927980.1 119775240 4604355 complement(2548968..2549672) 1 NC_008700.1 KEGG: son:SO2794 hypothetical protein; hypothetical protein 2549672 4604355 Sama_2105 Shewanella amazonensis SB2B hypothetical protein YP_927980.1 2548968 R 326297 CDS YP_927981.1 119775241 4604356 complement(2549744..2550172) 1 NC_008700.1 KEGG: sdn:Sden_2038 hypothetical protein; hypothetical protein 2550172 4604356 Sama_2106 Shewanella amazonensis SB2B hypothetical protein YP_927981.1 2549744 R 326297 CDS YP_927982.1 119775242 4604357 complement(2550422..2551432) 1 NC_008700.1 KEGG: mca:MCA2508 oxygenase, putative; flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1-like protein 2551432 4604357 Sama_2107 Shewanella amazonensis SB2B flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1-like protein YP_927982.1 2550422 R 326297 CDS YP_927983.1 119775243 4604358 complement(2551562..2552251) 1 NC_008700.1 KEGG: son:SO2798 hypothetical protein; hypothetical protein 2552251 4604358 Sama_2108 Shewanella amazonensis SB2B hypothetical protein YP_927983.1 2551562 R 326297 CDS YP_927984.1 119775244 4604359 2552288..2552767 1 NC_008700.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 2552767 4604359 Sama_2109 Shewanella amazonensis SB2B putative lipoprotein YP_927984.1 2552288 D 326297 CDS YP_927985.1 119775245 4604360 2552837..2553055 1 NC_008700.1 KEGG: sdn:Sden_2373 hypothetical protein; hypothetical protein 2553055 4604360 Sama_2110 Shewanella amazonensis SB2B hypothetical protein YP_927985.1 2552837 D 326297 CDS YP_927986.1 119775246 4604361 complement(2553180..2554697) 1 NC_008700.1 KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 2554697 4604361 Sama_2111 Shewanella amazonensis SB2B MATE efflux family protein YP_927986.1 2553180 R 326297 CDS YP_927987.1 119775247 4604362 complement(2554709..2555596) 1 NC_008700.1 KEGG: sdn:Sden_2375 ion transport protein; ion transport protein 2555596 4604362 Sama_2112 Shewanella amazonensis SB2B ion transport protein YP_927987.1 2554709 R 326297 CDS YP_927988.1 119775248 4604363 2555711..2556208 1 NC_008700.1 KEGG: sdn:Sden_2376 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG protein 2556208 4604363 Sama_2113 Shewanella amazonensis SB2B ErfK/YbiS/YcfS/YnhG protein YP_927988.1 2555711 D 326297 CDS YP_927989.1 119775249 4604364 2556216..2556776 1 NC_008700.1 KEGG: sdn:Sden_2377 protein of unknown function DUF991; hypothetical protein 2556776 4604364 Sama_2114 Shewanella amazonensis SB2B hypothetical protein YP_927989.1 2556216 D 326297 CDS YP_927990.1 119775250 4604365 2556975..2557820 1 NC_008700.1 KEGG: son:SO2769 hypothetical protein; hypothetical protein 2557820 4604365 Sama_2115 Shewanella amazonensis SB2B hypothetical protein YP_927990.1 2556975 D 326297 CDS YP_927991.1 119775251 4604366 2558010..2560658 1 NC_008700.1 KEGG: son:SO2930 hypothetical protein; hypothetical protein 2560658 4604366 Sama_2116 Shewanella amazonensis SB2B hypothetical protein YP_927991.1 2558010 D 326297 CDS YP_927992.1 119775252 4604367 2560706..2561896 1 NC_008700.1 KEGG: son:SO2931 hypothetical protein; hypothetical protein 2561896 4604367 Sama_2117 Shewanella amazonensis SB2B hypothetical protein YP_927992.1 2560706 D 326297 CDS YP_927993.1 119775253 4604368 complement(2561847..2562923) 1 NC_008700.1 KEGG: son:SO2932 transcriptional regulator, AraC family; AraC family transcriptional regulator 2562923 4604368 Sama_2118 Shewanella amazonensis SB2B AraC family transcriptional regulator YP_927993.1 2561847 R 326297 CDS YP_927994.1 119775254 4604369 complement(2563080..2564093) 1 NC_008700.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2564093 4604369 Sama_2119 Shewanella amazonensis SB2B putative periplasmic protease YP_927994.1 2563080 R 326297 CDS YP_927995.1 119775255 4604370 complement(2564228..2566708) 1 NC_008700.1 KEGG: son:SO2934 hypothetical protein; hypothetical protein 2566708 4604370 Sama_2120 Shewanella amazonensis SB2B hypothetical protein YP_927995.1 2564228 R 326297 CDS YP_927996.1 119775256 4604371 2566971..2567708 1 NC_008700.1 KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase 2567708 4604371 Sama_2121 Shewanella amazonensis SB2B short chain dehydrogenase YP_927996.1 2566971 D 326297 CDS YP_927997.1 119775257 4604372 2567784..2568695 1 NC_008700.1 KEGG: vpa:VPA0405 hypothetical protein; hypothetical protein 2568695 4604372 Sama_2122 Shewanella amazonensis SB2B hypothetical protein YP_927997.1 2567784 D 326297 CDS YP_927998.1 119775258 4604373 complement(2568762..2569715) 1 NC_008700.1 KEGG: son:SO2936 hypothetical protein; hypothetical protein 2569715 4604373 Sama_2123 Shewanella amazonensis SB2B hypothetical protein YP_927998.1 2568762 R 326297 CDS YP_927999.1 119775259 4604374 complement(2569814..2570701) 1 NC_008700.1 KEGG: sdn:Sden_2436 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 2570701 4604374 Sama_2124 Shewanella amazonensis SB2B pseudouridine synthase, Rsu YP_927999.1 2569814 R 326297 CDS YP_928000.1 119775260 4604375 complement(2570694..2571290) 1 NC_008700.1 KEGG: son:SO3014 putative segregation and condensation protein B; putative transcriptional regulator 2571290 4604375 Sama_2125 Shewanella amazonensis SB2B putative transcriptional regulator YP_928000.1 2570694 R 326297 CDS YP_928001.1 119775261 4604376 complement(2571290..2572078) 1 NC_008700.1 KEGG: son:SO3015 putative segregation and condensation protein A; putative segregation and condensation protein A 2572078 4604376 Sama_2126 Shewanella amazonensis SB2B putative segregation and condensation protein A YP_928001.1 2571290 R 326297 CDS YP_928002.1 119775262 4604377 complement(2572267..2572887) 1 NC_008700.1 KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 2572887 4604377 Sama_2127 Shewanella amazonensis SB2B Sua5/YciO/YrdC/YwlC family protein YP_928002.1 2572267 R 326297 CDS YP_928003.1 119775263 4604378 complement(2572884..2573744) 1 NC_008700.1 KEGG: sdn:Sden_2449 PHP-like protein; PHP-like protein 2573744 4604378 Sama_2128 Shewanella amazonensis SB2B PHP-like protein YP_928003.1 2572884 R 326297 CDS YP_928004.1 119775264 4604379 2574098..2575681 1 NC_008700.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2575681 4604379 Sama_2129 Shewanella amazonensis SB2B anthranilate synthase component I YP_928004.1 2574098 D 326297 CDS YP_928005.1 119775265 4604380 2575678..2576277 1 NC_008700.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2576277 4604380 Sama_2130 Shewanella amazonensis SB2B anthranilate synthase component II YP_928005.1 2575678 D 326297 CDS YP_928006.1 119775266 4604381 2576274..2577308 1 NC_008700.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2577308 trpD 4604381 trpD Shewanella amazonensis SB2B anthranilate phosphoribosyltransferase YP_928006.1 2576274 D 326297 CDS YP_928007.1 119775267 4604382 2577322..2578710 1 NC_008700.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2578710 4604382 Sama_2132 Shewanella amazonensis SB2B bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_928007.1 2577322 D 326297 CDS YP_928008.1 119775268 4604383 2578783..2579976 1 NC_008700.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2579976 4604383 Sama_2133 Shewanella amazonensis SB2B tryptophan synthase subunit beta YP_928008.1 2578783 D 326297 CDS YP_928009.1 119775269 4604384 2579988..2580788 1 NC_008700.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2580788 trpA 4604384 trpA Shewanella amazonensis SB2B tryptophan synthase subunit alpha YP_928009.1 2579988 D 326297 CDS YP_928010.1 119775270 4604385 2581044..2581577 1 NC_008700.1 KEGG: rme:Rmet_5659 isochorismatase hydrolase; isochorismatase hydrolase 2581577 4604385 Sama_2135 Shewanella amazonensis SB2B isochorismatase hydrolase YP_928010.1 2581044 D 326297 CDS YP_928011.1 119775271 4604386 complement(2581701..2583008) 1 NC_008700.1 KEGG: vch:VC0600 hypothetical protein; hypothetical protein 2583008 4604386 Sama_2136 Shewanella amazonensis SB2B hypothetical protein YP_928011.1 2581701 R 326297 CDS YP_928012.1 119775272 4604387 2583191..2583736 1 NC_008700.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2583736 4604387 Sama_2137 Shewanella amazonensis SB2B intracellular septation protein A YP_928012.1 2583191 D 326297 CDS YP_928013.1 119775273 4604388 2583736..2584035 1 NC_008700.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2584035 4604388 Sama_2138 Shewanella amazonensis SB2B YciI-like protein YP_928013.1 2583736 D 326297 CDS YP_928014.1 119775274 4604389 2584035..2584841 1 NC_008700.1 KEGG: sdn:Sden_1465 exodeoxyribonuclease III; exodeoxyribonuclease III 2584841 4604389 Sama_2139 Shewanella amazonensis SB2B exodeoxyribonuclease III YP_928014.1 2584035 D 326297 CDS YP_928015.1 119775275 4604390 complement(2584975..2586414) 1 NC_008700.1 KEGG: sdn:Sden_0861 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 2586414 4604390 Sama_2140 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928015.1 2584975 R 326297 CDS YP_928016.1 119775276 4604391 complement(2586534..2586998) 1 NC_008700.1 KEGG: son:SO3047 hypothetical protein; hypothetical protein 2586998 4604391 Sama_2141 Shewanella amazonensis SB2B hypothetical protein YP_928016.1 2586534 R 326297 CDS YP_928017.1 119775277 4604392 complement(2587229..2587873) 1 NC_008700.1 KEGG: son:SO3054 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2587873 4604392 Sama_2142 Shewanella amazonensis SB2B metallo-beta-lactamase family protein YP_928017.1 2587229 R 326297 CDS YP_928018.1 119775278 4604393 2588046..2589365 1 NC_008700.1 KEGG: sfr:Sfri_1410 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2589365 4604393 Sama_2143 Shewanella amazonensis SB2B alpha/beta hydrolase fold domain-containing protein YP_928018.1 2588046 D 326297 CDS YP_928019.1 119775279 4604394 2589555..2589743 1 NC_008700.1 hypothetical protein 2589743 4604394 Sama_2144 Shewanella amazonensis SB2B hypothetical protein YP_928019.1 2589555 D 326297 CDS YP_928020.1 119775280 4604395 complement(2589979..2592063) 1 NC_008700.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2592063 4604395 Sama_2145 Shewanella amazonensis SB2B DNA topoisomerase III YP_928020.1 2589979 R 326297 CDS YP_928021.1 119775281 4604396 complement(2592502..2594016) 1 NC_008700.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2594016 4604396 Sama_2146 Shewanella amazonensis SB2B amidophosphoribosyltransferase YP_928021.1 2592502 R 326297 CDS YP_928022.1 119775282 4604397 complement(2594061..2594549) 1 NC_008700.1 KEGG: son:SO3065 colicin V production protein; colicin V production protein 2594549 4604397 Sama_2147 Shewanella amazonensis SB2B colicin V production protein YP_928022.1 2594061 R 326297 CDS YP_928023.1 119775283 4604398 complement(2594654..2595325) 1 NC_008700.1 KEGG: sdn:Sden_1488 sporulation related; sporulation-like protein 2595325 4604398 Sama_2148 Shewanella amazonensis SB2B sporulation-like protein YP_928023.1 2594654 R 326297 CDS YP_928024.1 119775284 4604399 complement(2595338..2596603) 1 NC_008700.1 KEGG: son:SO3067 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2596603 4604399 Sama_2149 Shewanella amazonensis SB2B bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_928024.1 2595338 R 326297 CDS YP_928025.1 119775285 4604400 complement(2596714..2597499) 1 NC_008700.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2597499 truA 4604400 truA Shewanella amazonensis SB2B tRNA pseudouridine synthase A YP_928025.1 2596714 R 326297 CDS YP_928026.1 119775286 4604401 complement(2597618..2600431) 1 NC_008700.1 KEGG: son:SO3069 putative membrane protein; hypothetical protein 2600431 4604401 Sama_2151 Shewanella amazonensis SB2B hypothetical protein YP_928026.1 2597618 R 326297 CDS YP_928027.1 119775287 4604402 complement(2600610..2601626) 1 NC_008700.1 KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; aspartate-semialdehyde dehydrogenase 2601626 4604402 Sama_2152 Shewanella amazonensis SB2B aspartate-semialdehyde dehydrogenase YP_928027.1 2600610 R 326297 CDS YP_928028.1 119775288 4604403 complement(2601632..2602759) 1 NC_008700.1 KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; erythronate-4-phosphate dehydrogenase 2602759 4604403 Sama_2153 Shewanella amazonensis SB2B erythronate-4-phosphate dehydrogenase YP_928028.1 2601632 R 326297 CDS YP_928029.1 119775289 4604404 complement(2602880..2604091) 1 NC_008700.1 KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; 3-oxoacyl-ACP synthase 2604091 4604404 Sama_2154 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_928029.1 2602880 R 326297 CDS YP_928030.1 119775290 4604405 2604195..2606009 1 NC_008700.1 KEGG: son:SO3073 hypothetical protein; glycine/D-amino acid oxidase (deaminating)-like protein 2606009 4604405 Sama_2155 Shewanella amazonensis SB2B glycine/D-amino acid oxidase (deaminating)-like protein YP_928030.1 2604195 D 326297 CDS YP_928031.1 119775291 4604406 complement(2606087..2606350) 1 NC_008700.1 KEGG: sdn:Sden_1540 hypothetical protein; hypothetical protein 2606350 4604406 Sama_2156 Shewanella amazonensis SB2B hypothetical protein YP_928031.1 2606087 R 326297 CDS YP_928032.1 119775292 4604407 complement(2606354..2607478) 1 NC_008700.1 KEGG: son:SO3077 hypothetical protein; hypothetical protein 2607478 4604407 Sama_2157 Shewanella amazonensis SB2B hypothetical protein YP_928032.1 2606354 R 326297 CDS YP_928033.1 119775293 4604408 complement(2607526..2608695) 1 NC_008700.1 KEGG: sdn:Sden_1538 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2608695 4604408 Sama_2158 Shewanella amazonensis SB2B major facilitator superfamily transporter YP_928033.1 2607526 R 326297 CDS YP_928034.1 119775294 4604409 complement(2608704..2609801) 1 NC_008700.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2609801 4604409 Sama_2159 Shewanella amazonensis SB2B chorismate synthase YP_928034.1 2608704 R 326297 CDS YP_928035.1 119775295 4604410 complement(2609875..2610819) 1 NC_008700.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2610819 4604410 Sama_2160 Shewanella amazonensis SB2B N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_928035.1 2609875 R 326297 CDS YP_928036.1 119775296 4604411 2610899..2611429 1 NC_008700.1 KEGG: son:SO3081 Smr domain protein; hypothetical protein 2611429 4604411 Sama_2161 Shewanella amazonensis SB2B hypothetical protein YP_928036.1 2610899 D 326297 CDS YP_928037.1 119775297 4604412 complement(2611555..2612025) 1 NC_008700.1 KEGG: son:SO3082 phosphohistidine phosphatase SixA; putative phosphohistidine phosphatase, SixA 2612025 4604412 Sama_2162 Shewanella amazonensis SB2B putative phosphohistidine phosphatase, SixA YP_928037.1 2611555 R 326297 CDS YP_928038.1 119775298 4604413 2612191..2614980 1 NC_008700.1 KEGG: son:SO3083 peptidase, M16 family; M16 family peptidase 2614980 4604413 Sama_2163 Shewanella amazonensis SB2B M16 family peptidase YP_928038.1 2612191 D 326297 CDS YP_928039.1 119775299 4604414 2615312..2619607 1 NC_008700.1 KEGG: son:SO3084 sensory box protein; sensory box protein 2619607 4604414 Sama_2164 Shewanella amazonensis SB2B sensory box protein YP_928039.1 2615312 D 326297 CDS YP_928040.1 119775300 4604415 2619699..2620130 1 NC_008700.1 KEGG: sfr:Sfri_2673 hypothetical protein; hypothetical protein 2620130 4604415 Sama_2165 Shewanella amazonensis SB2B hypothetical protein YP_928040.1 2619699 D 326297 CDS YP_928041.1 119775301 4604416 complement(2620346..2620591) 1 NC_008700.1 KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein 2620591 4604416 Sama_2166 Shewanella amazonensis SB2B hypothetical protein YP_928041.1 2620346 R 326297 CDS YP_928042.1 119775302 4604417 complement(2620722..2622842) 1 NC_008700.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2622842 fadJ 4604417 fadJ Shewanella amazonensis SB2B multifunctional fatty acid oxidation complex subunit alpha YP_928042.1 2620722 R 326297 CDS YP_928043.1 119775303 4604418 complement(2622849..2624159) 1 NC_008700.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2624159 fadI 4604418 fadI Shewanella amazonensis SB2B 3-ketoacyl-CoA thiolase YP_928043.1 2622849 R 326297 CDS YP_928044.1 119775304 4604419 2624387..2625343 1 NC_008700.1 KEGG: son:SO3090 MoxR domain protein; MoxR domain-containing protein 2625343 4604419 Sama_2169 Shewanella amazonensis SB2B MoxR domain-containing protein YP_928044.1 2624387 D 326297 CDS YP_928045.1 119775305 4604420 2625343..2626299 1 NC_008700.1 KEGG: son:SO3091 hypothetical protein; hypothetical protein 2626299 4604420 Sama_2170 Shewanella amazonensis SB2B hypothetical protein YP_928045.1 2625343 D 326297 CDS YP_928046.1 119775306 4604421 2626304..2626843 1 NC_008700.1 KEGG: son:SO3092 hypothetical protein; hypothetical protein 2626843 4604421 Sama_2171 Shewanella amazonensis SB2B hypothetical protein YP_928046.1 2626304 D 326297 CDS YP_928047.1 119775307 4604422 2626837..2627820 1 NC_008700.1 KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein 2627820 4604422 Sama_2172 Shewanella amazonensis SB2B von Willebrand factor type A domain-containing protein YP_928047.1 2626837 D 326297 CDS YP_928048.1 119775308 4604423 2627817..2629922 1 NC_008700.1 KEGG: son:SO3094 TPR domain protein; hypothetical protein 2629922 4604423 Sama_2173 Shewanella amazonensis SB2B hypothetical protein YP_928048.1 2627817 D 326297 CDS YP_928049.1 119775309 4604424 2629916..2631538 1 NC_008700.1 KEGG: son:SO3095 hypothetical protein; hypothetical protein 2631538 4604424 Sama_2174 Shewanella amazonensis SB2B hypothetical protein YP_928049.1 2629916 D 326297 CDS YP_928050.1 119775310 4604425 2631702..2632265 1 NC_008700.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2632265 4604425 Sama_2175 Shewanella amazonensis SB2B RNA polymerase sigma factor YP_928050.1 2631702 D 326297 CDS YP_928051.1 119775311 4604426 2632258..2632962 1 NC_008700.1 KEGG: son:SO3097 hypothetical protein; hypothetical protein 2632962 4604426 Sama_2176 Shewanella amazonensis SB2B hypothetical protein YP_928051.1 2632258 D 326297 CDS YP_928052.1 119775312 4604427 2633235..2634683 1 NC_008700.1 KEGG: sdn:Sden_1520 sodium/proline symporter; sodium/proline symporter 2634683 4604427 Sama_2177 Shewanella amazonensis SB2B sodium/proline symporter YP_928052.1 2633235 D 326297 CDS YP_928053.1 119775313 4604428 2635010..2636332 1 NC_008700.1 KEGG: sdn:Sden_1414 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2636332 4604428 Sama_2178 Shewanella amazonensis SB2B aromatic hydrocarbon degradation membrane protein YP_928053.1 2635010 D 326297 CDS YP_928054.1 119775314 4604429 2636457..2636834 1 NC_008700.1 KEGG: son:SO3100 hypothetical protein; hypothetical protein 2636834 4604429 Sama_2179 Shewanella amazonensis SB2B hypothetical protein YP_928054.1 2636457 D 326297 CDS YP_928055.1 119775315 4604430 2636912..2637628 1 NC_008700.1 KEGG: son:SO3101 hypothetical protein; hypothetical protein 2637628 4604430 Sama_2180 Shewanella amazonensis SB2B hypothetical protein YP_928055.1 2636912 D 326297 CDS YP_928056.1 119775316 4604431 2637764..2638759 1 NC_008700.1 KEGG: son:SO3102 AcrA/AcrE family protein; AcrA/AcrE family protein 2638759 4604431 Sama_2181 Shewanella amazonensis SB2B AcrA/AcrE family protein YP_928056.1 2637764 D 326297 CDS YP_928057.1 119775317 4604432 2638770..2641991 1 NC_008700.1 KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 2641991 4604432 Sama_2182 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_928057.1 2638770 D 326297 CDS YP_928058.1 119775318 4604433 2642017..2642232 1 NC_008700.1 KEGG: son:SO3104 hypothetical protein; hypothetical protein 2642232 4604433 Sama_2183 Shewanella amazonensis SB2B hypothetical protein YP_928058.1 2642017 D 326297 CDS YP_928059.1 119775319 4604434 2642265..2642654 1 NC_008700.1 KEGG: son:SO3105 phage shock protein E; phage shock protein E 2642654 4604434 Sama_2184 Shewanella amazonensis SB2B phage shock protein E YP_928059.1 2642265 D 326297 CDS YP_928060.1 119775320 4604435 2643189..2645600 1 NC_008700.1 KEGG: son:SO3106 cold-active serine alkaline protease; cold-active serine alkaline protease 2645600 4604435 Sama_2185 Shewanella amazonensis SB2B cold-active serine alkaline protease YP_928060.1 2643189 D 326297 CDS YP_928061.1 119775321 4604436 complement(2645717..2646256) 1 NC_008700.1 KEGG: son:SO3107 hypothetical protein; hypothetical protein 2646256 4604436 Sama_2186 Shewanella amazonensis SB2B hypothetical protein YP_928061.1 2645717 R 326297 CDS YP_928062.1 119775322 4604437 complement(2646275..2647186) 1 NC_008700.1 KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; precorrin-2 oxidase/ferrochelatase 2647186 4604437 Sama_2187 Shewanella amazonensis SB2B precorrin-2 oxidase/ferrochelatase YP_928062.1 2646275 R 326297 CDS YP_928063.1 119775323 4604438 complement(2647195..2647554) 1 NC_008700.1 KEGG: sdn:Sden_1406 rhodanese-like protein; rhodanese-like protein 2647554 4604438 Sama_2188 Shewanella amazonensis SB2B rhodanese-like protein YP_928063.1 2647195 R 326297 CDS YP_928064.1 119775324 4604439 complement(2647632..2647949) 1 NC_008700.1 KEGG: son:SO3109 hypothetical protein; hypothetical protein 2647949 4604439 Sama_2189 Shewanella amazonensis SB2B hypothetical protein YP_928064.1 2647632 R 326297 CDS YP_928065.1 119775325 4604440 complement(2648150..2649097) 1 NC_008700.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2649097 secF 4604440 secF Shewanella amazonensis SB2B preprotein translocase subunit SecF YP_928065.1 2648150 R 326297 CDS YP_928066.1 119775326 4604441 complement(2649111..2650961) 1 NC_008700.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2650961 secD 4604441 secD Shewanella amazonensis SB2B preprotein translocase subunit SecD YP_928066.1 2649111 R 326297 CDS YP_928067.1 119775327 4604442 complement(2650980..2651315) 1 NC_008700.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2651315 yajC 4604442 yajC Shewanella amazonensis SB2B preprotein translocase subunit YajC YP_928067.1 2650980 R 326297 CDS YP_928068.1 119775328 4604443 complement(2651342..2652466) 1 NC_008700.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2652466 tgt 4604443 tgt Shewanella amazonensis SB2B queuine tRNA-ribosyltransferase YP_928068.1 2651342 R 326297 CDS YP_928069.1 119775329 4604444 complement(2652619..2653656) 1 NC_008700.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2653656 queA 4604444 queA Shewanella amazonensis SB2B S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_928069.1 2652619 R 326297 CDS YP_928070.1 119775330 4604445 2654142..2654735 1 NC_008700.1 KEGG: sdn:Sden_1399 protein of unknown function DUF479; hypothetical protein 2654735 4604445 Sama_2195 Shewanella amazonensis SB2B hypothetical protein YP_928070.1 2654142 D 326297 CDS YP_928071.1 119775331 4604446 2654736..2655248 1 NC_008700.1 KEGG: son:SO3117 thioredoxin, putative; thioredoxin 2655248 4604446 Sama_2196 Shewanella amazonensis SB2B thioredoxin YP_928071.1 2654736 D 326297 CDS YP_928072.1 119775332 4604447 2655310..2655984 1 NC_008700.1 KEGG: sdn:Sden_2524 pseudouridylate synthase; pseudouridylate synthase 2655984 4604447 Sama_2197 Shewanella amazonensis SB2B pseudouridylate synthase YP_928072.1 2655310 D 326297 CDS YP_928073.1 119775333 4604448 complement(2656005..2656421) 1 NC_008700.1 KEGG: son:SO3119 hypothetical protein; hypothetical protein 2656421 4604448 Sama_2198 Shewanella amazonensis SB2B hypothetical protein YP_928073.1 2656005 R 326297 CDS YP_928074.1 119775334 4604449 complement(2656764..2657267) 1 NC_008700.1 KEGG: son:SO3121 hypothetical protein; hypothetical protein 2657267 4604449 Sama_2199 Shewanella amazonensis SB2B hypothetical protein YP_928074.1 2656764 R 326297 CDS YP_928075.1 119775335 4604450 complement(2657360..2658577) 1 NC_008700.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2658577 4604450 Sama_2200 Shewanella amazonensis SB2B serine/threonine transporter SstT YP_928075.1 2657360 R 326297 CDS YP_928076.1 119775336 4604451 complement(2658745..2659644) 1 NC_008700.1 KEGG: son:SO3123 chemotaxis protein CheV; chemotaxis protein CheV 2659644 4604451 Sama_2201 Shewanella amazonensis SB2B chemotaxis protein CheV YP_928076.1 2658745 R 326297 CDS YP_928077.1 119775337 4604452 complement(2659662..2661188) 1 NC_008700.1 KEGG: vvu:VV13126 phopholipase D-family protein; phopholipase D-family protein 2661188 4604452 Sama_2202 Shewanella amazonensis SB2B phopholipase D-family protein YP_928077.1 2659662 R 326297 CDS YP_928078.1 119775338 4604453 complement(2661210..2661686) 1 NC_008700.1 KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; tyrosine-specific protein phosphatase 2661686 4604453 Sama_2203 Shewanella amazonensis SB2B tyrosine-specific protein phosphatase YP_928078.1 2661210 R 326297 CDS YP_928079.1 119775339 4604454 complement(2661775..2662314) 1 NC_008700.1 KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2662314 4604454 Sama_2204 Shewanella amazonensis SB2B methylated-DNA--protein-cysteine methyltransferase YP_928079.1 2661775 R 326297 CDS YP_928080.1 119775340 4604455 complement(2662444..2663895) 1 NC_008700.1 KEGG: son:SO3127 Ada regulatory protein, putative; Ada regulatory protein 2663895 4604455 Sama_2205 Shewanella amazonensis SB2B Ada regulatory protein YP_928080.1 2662444 R 326297 CDS YP_928081.1 119775341 4604456 2664098..2665936 1 NC_008700.1 KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter ATP-binding protein/permease 2665936 4604456 Sama_2206 Shewanella amazonensis SB2B ABC transporter ATP-binding protein/permease YP_928081.1 2664098 D 326297 CDS YP_928082.1 119775342 4605999 complement(2667907..2669316) 1 NC_008700.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2669316 gltX 4605999 gltX Shewanella amazonensis SB2B glutamyl-tRNA synthetase YP_928082.1 2667907 R 326297 CDS YP_928083.1 119775343 4604458 2669558..2669785 1 NC_008700.1 KEGG: son:SO3132 hypothetical protein; hypothetical protein 2669785 4604458 Sama_2208 Shewanella amazonensis SB2B hypothetical protein YP_928083.1 2669558 D 326297 CDS YP_928084.1 119775344 4604459 2670054..2671073 1 NC_008700.1 KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; C4-dicarboxylate-binding periplasmic protein 2671073 4604459 Sama_2209 Shewanella amazonensis SB2B C4-dicarboxylate-binding periplasmic protein YP_928084.1 2670054 D 326297 CDS YP_928085.1 119775345 4604460 2671170..2671811 1 NC_008700.1 KEGG: son:SO3135 C4-dicarboxylate transporter, putative; C4-dicarboxylate transporter 2671811 4604460 Sama_2210 Shewanella amazonensis SB2B C4-dicarboxylate transporter YP_928085.1 2671170 D 326297 CDS YP_928086.1 119775346 4604461 2671808..2673208 1 NC_008700.1 KEGG: son:SO3136 C4-dicarboxylate transport protein; C4-dicarboxylate transport protein 2673208 4604461 Sama_2211 Shewanella amazonensis SB2B C4-dicarboxylate transport protein YP_928086.1 2671808 D 326297 CDS YP_928087.1 119775347 4604462 2673300..2675102 1 NC_008700.1 KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; putative two-component sensor histidine kinase protein 2675102 4604462 Sama_2212 Shewanella amazonensis SB2B putative two-component sensor histidine kinase protein YP_928087.1 2673300 D 326297 CDS YP_928088.1 119775348 4604463 2675092..2676477 1 NC_008700.1 KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; response regulator receiver protein 2676477 4604463 Sama_2213 Shewanella amazonensis SB2B response regulator receiver protein YP_928088.1 2675092 D 326297 CDS YP_928089.1 119775349 4604464 complement(2676452..2677681) 1 NC_008700.1 KEGG: son:SO1917 multidrug resistance protein, putative; multidrug resistance protein 2677681 4604464 Sama_2214 Shewanella amazonensis SB2B multidrug resistance protein YP_928089.1 2676452 R 326297 CDS YP_928090.1 119775350 4604465 2677804..2678685 1 NC_008700.1 KEGG: son:SO1916 transcriptional regulator, LysR family; LysR family transcriptional regulator 2678685 4604465 Sama_2215 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928090.1 2677804 D 326297 CDS YP_928091.1 119775351 4604466 complement(2678727..2679188) 1 NC_008700.1 KEGG: sdn:Sden_3044 hypothetical protein; hypothetical protein 2679188 4604466 Sama_2216 Shewanella amazonensis SB2B hypothetical protein YP_928091.1 2678727 R 326297 CDS YP_928092.1 119775352 4604467 complement(2679199..2681316) 1 NC_008700.1 KEGG: sdn:Sden_3045 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2681316 4604467 Sama_2217 Shewanella amazonensis SB2B peptidase S8/S53 subtilisin kexin sedolisin YP_928092.1 2679199 R 326297 CDS YP_928093.1 119775353 4604468 complement(2681740..2682381) 1 NC_008700.1 KEGG: she:Shewmr4_2603 maleylacetoacetate isomerase; maleylacetoacetate isomerase 2682381 4604468 Sama_2218 Shewanella amazonensis SB2B maleylacetoacetate isomerase YP_928093.1 2681740 R 326297 CDS YP_928094.1 119775354 4604469 complement(2682473..2683459) 1 NC_008700.1 KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate hydrolase family protein 2683459 4604469 Sama_2219 Shewanella amazonensis SB2B fumarylacetoacetate hydrolase family protein YP_928094.1 2682473 R 326297 CDS YP_928095.1 119775355 4604470 complement(2683698..2685236) 1 NC_008700.1 KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulatory protein TyrR 2685236 4604470 Sama_2220 Shewanella amazonensis SB2B transcriptional regulatory protein TyrR YP_928095.1 2683698 R 326297 CDS YP_928096.1 119775356 4604471 complement(2685441..2685779) 1 NC_008700.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 2685779 phhB 4604471 phhB Shewanella amazonensis SB2B pterin-4-alpha-carbinolamine dehydratase YP_928096.1 2685441 R 326297 CDS YP_928097.1 119775357 4604472 complement(2685807..2686598) 1 NC_008700.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 2686598 phhA 4604472 phhA Shewanella amazonensis SB2B phenylalanine 4-monooxygenase YP_928097.1 2685807 R 326297 CDS YP_928098.1 119775358 4604473 2686957..2687865 1 NC_008700.1 KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 2687865 4604473 Sama_2223 Shewanella amazonensis SB2B UTP--glucose-1-phosphate uridylyltransferase YP_928098.1 2686957 D 326297 CDS YP_928099.1 119775359 4604474 2687868..2688878 1 NC_008700.1 KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 2688878 4604474 Sama_2224 Shewanella amazonensis SB2B UDP-glucose 4-epimerase YP_928099.1 2687868 D 326297 CDS YP_928100.1 119775360 4604475 2688907..2689404 1 NC_008700.1 KEGG: sdn:Sden_2598 ferredoxin-type protein NapF; ferredoxin-type protein NapF 2689404 4604475 Sama_2225 Shewanella amazonensis SB2B ferredoxin-type protein NapF YP_928100.1 2688907 D 326297 CDS YP_928101.1 119775361 4604476 2689762..2690178 1 NC_008700.1 KEGG: sdn:Sden_0706 protein of unknown function DUF583; hypothetical protein 2690178 4604476 Sama_2226 Shewanella amazonensis SB2B hypothetical protein YP_928101.1 2689762 D 326297 CDS YP_928102.1 119775362 4604477 2690378..2691370 1 NC_008700.1 KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 2691370 4604477 Sama_2227 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928102.1 2690378 D 326297 CDS YP_928103.1 119775363 4604478 2691526..2693793 1 NC_008700.1 KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 2693793 4604478 Sama_2228 Shewanella amazonensis SB2B decaheme cytochrome c YP_928103.1 2691526 D 326297 CDS YP_928104.1 119775364 4604479 complement(2693918..2694610) 1 NC_008700.1 KEGG: son:SO1658 hypothetical protein; hypothetical protein 2694610 4604479 Sama_2229 Shewanella amazonensis SB2B hypothetical protein YP_928104.1 2693918 R 326297 CDS YP_928105.1 119775365 4604480 complement(2694607..2695344) 1 NC_008700.1 KEGG: son:SO1657 hypothetical protein; hypothetical protein 2695344 4604480 Sama_2230 Shewanella amazonensis SB2B hypothetical protein YP_928105.1 2694607 R 326297 CDS YP_928106.1 119775366 4604481 complement(2695484..2696383) 1 NC_008700.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 2696383 4604481 Sama_2231 Shewanella amazonensis SB2B fructokinase YP_928106.1 2695484 R 326297 CDS YP_928107.1 119775367 4604482 complement(2696411..2697256) 1 NC_008700.1 KEGG: son:SO1655 cysQ protein; cysQ protein 2697256 4604482 Sama_2232 Shewanella amazonensis SB2B cysQ protein YP_928107.1 2696411 R 326297 CDS YP_928108.1 119775368 4604483 complement(2697441..2698196) 1 NC_008700.1 KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase 2698196 4604483 Sama_2233 Shewanella amazonensis SB2B putative hydrolase YP_928108.1 2697441 R 326297 CDS YP_928109.1 119775369 4604484 2698333..2698941 1 NC_008700.1 KEGG: son:SO3163 lipoprotein; lipoprotein NlpE involved in copper resistance 2698941 4604484 Sama_2234 Shewanella amazonensis SB2B lipoprotein NlpE involved in copper resistance YP_928109.1 2698333 D 326297 CDS YP_928110.1 119775370 4604485 complement(2699039..2700043) 1 NC_008700.1 KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein; NAD dependent epimerase/dehydratase family protein 2700043 4604485 Sama_2235 Shewanella amazonensis SB2B NAD dependent epimerase/dehydratase family protein YP_928110.1 2699039 R 326297 CDS YP_928111.1 119775371 4604486 complement(2700084..2701442) 1 NC_008700.1 KEGG: sgl:SG1368 putative UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase 2701442 4604486 Sama_2236 Shewanella amazonensis SB2B UDP-glucose 6-dehydrogenase YP_928111.1 2700084 R 326297 CDS YP_928112.1 119775372 4604487 complement(2701549..2702079) 1 NC_008700.1 KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 2702079 4604487 Sama_2237 Shewanella amazonensis SB2B dTDP-4-dehydrorhamnose 3,5-epimerase YP_928112.1 2701549 R 326297 CDS YP_928113.1 119775373 4604488 complement(2702067..2702303) 1 NC_008700.1 KEGG: cps:CPS_4309 hypothetical protein; hypothetical protein 2702303 4604488 Sama_2238 Shewanella amazonensis SB2B hypothetical protein YP_928113.1 2702067 R 326297 CDS YP_928114.1 119775374 4604489 complement(2702369..2703274) 1 NC_008700.1 KEGG: pcr:Pcryo_0627 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2703274 4604489 Sama_2239 Shewanella amazonensis SB2B dTDP-4-dehydrorhamnose reductase YP_928114.1 2702369 R 326297 CDS YP_928115.1 119775375 4604490 complement(2703745..2704662) 1 NC_008700.1 KEGG: pcr:Pcryo_0625 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 2704662 4604490 Sama_2240 Shewanella amazonensis SB2B glucose-1-phosphate thymidylyltransferase YP_928115.1 2703745 R 326297 CDS YP_928116.1 119775376 4604491 complement(2704667..2705032) 1 NC_008700.1 KEGG: bth:BT0352 hypothetical protein; hypothetical protein 2705032 4604491 Sama_2241 Shewanella amazonensis SB2B hypothetical protein YP_928116.1 2704667 R 326297 CDS YP_928117.1 119775377 4604492 complement(2705086..2706219) 1 NC_008700.1 KEGG: son:SO3188 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2706219 4604492 Sama_2242 Shewanella amazonensis SB2B dTDP-glucose 4,6-dehydratase YP_928117.1 2705086 R 326297 CDS YP_928118.1 119775378 4604493 complement(2706734..2708092) 1 NC_008700.1 KEGG: pat:Patl_1573 phosphoglucosamine mutase; phosphoglucosamine mutase 2708092 4604493 Sama_2243 Shewanella amazonensis SB2B phosphoglucosamine mutase YP_928118.1 2706734 R 326297 CDS YP_928119.1 119775379 4604494 complement(2708203..2710137) 1 NC_008700.1 KEGG: son:SO3171 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2710137 4604494 Sama_2244 Shewanella amazonensis SB2B polysaccharide biosynthesis protein YP_928119.1 2708203 R 326297 CDS YP_928120.1 119775380 4604495 complement(2710189..2710767) 1 NC_008700.1 KEGG: dps:DP0029 pilin glycosylation protein; pilin glycosylation protein 2710767 4604495 Sama_2245 Shewanella amazonensis SB2B pilin glycosylation protein YP_928120.1 2710189 R 326297 CDS YP_928121.1 119775381 4604496 complement(2710777..2711610) 1 NC_008700.1 KEGG: pca:Pcar_1117 hypothetical protein; methionyl-tRNA formyltransferase 2711610 4604496 Sama_2246 Shewanella amazonensis SB2B methionyl-tRNA formyltransferase YP_928121.1 2710777 R 326297 CDS YP_928122.1 119775382 4604497 complement(2711624..2712190) 1 NC_008700.1 KEGG: ssp:SSP0070 capsular polysaccharide synthesis protein; capsular polysaccharide synthesis protein 2712190 4604497 Sama_2247 Shewanella amazonensis SB2B capsular polysaccharide synthesis protein YP_928122.1 2711624 R 326297 CDS YP_928123.1 119775383 4604498 complement(2712197..2712874) 1 NC_008700.1 KEGG: pca:Pcar_1118 conserved hypothetical protein, possibly membrane-associated; hypothetical protein 2712874 4604498 Sama_2248 Shewanella amazonensis SB2B hypothetical protein YP_928123.1 2712197 R 326297 CDS YP_928124.1 119775384 4604499 complement(2712884..2713807) 1 NC_008700.1 KEGG: lpp:lpp0827 hypothetical protein; hypothetical protein 2713807 4604499 Sama_2249 Shewanella amazonensis SB2B hypothetical protein YP_928124.1 2712884 R 326297 CDS YP_928125.1 119775385 4604500 complement(2713804..2714535) 1 NC_008700.1 KEGG: cps:CPS_2625 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 2714535 4604500 Sama_2250 Shewanella amazonensis SB2B acetoacetyl-CoA reductase YP_928125.1 2713804 R 326297 CDS YP_928126.1 119775386 4604501 complement(2714532..2715392) 1 NC_008700.1 KEGG: fnu:FN1909 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-glucose 4-epimerase 2715392 4604501 Sama_2251 Shewanella amazonensis SB2B UDP-glucose 4-epimerase YP_928126.1 2714532 R 326297 CDS YP_928127.1 119775387 4604502 complement(2715393..2716022) 1 NC_008700.1 KEGG: mac:MA2464 hypothetical protein; hypothetical protein 2716022 4604502 Sama_2252 Shewanella amazonensis SB2B hypothetical protein YP_928127.1 2715393 R 326297 CDS YP_928128.1 119775388 4604503 complement(2716019..2717179) 1 NC_008700.1 KEGG: nar:Saro_3221 glycosyl transferase, group 1; hypothetical protein 2717179 4604503 Sama_2253 Shewanella amazonensis SB2B hypothetical protein YP_928128.1 2716019 R 326297 CDS YP_928129.1 119775389 4604504 complement(2717169..2718371) 1 NC_008700.1 KEGG: mmp:MMP0354 putative oligosaccharide transporter; hypothetical protein 2718371 4604504 Sama_2254 Shewanella amazonensis SB2B hypothetical protein YP_928129.1 2717169 R 326297 CDS YP_928130.1 119775390 4604505 complement(2718364..2719563) 1 NC_008700.1 KEGG: bfs:BF1907 putative LPS biosynthesis related polymerase; hypothetical protein 2719563 4604505 Sama_2255 Shewanella amazonensis SB2B hypothetical protein YP_928130.1 2718364 R 326297 CDS YP_928131.1 119775391 4604506 complement(2719556..2720596) 1 NC_008700.1 KEGG: mhu:Mhun_0391 glycosyl transferase, group 1; hypothetical protein 2720596 4604506 Sama_2256 Shewanella amazonensis SB2B hypothetical protein YP_928131.1 2719556 R 326297 CDS YP_928132.1 119775392 4604507 complement(2720598..2721671) 1 NC_008700.1 KEGG: plt:Plut_1482 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS family protein 2721671 4604507 Sama_2257 Shewanella amazonensis SB2B DegT/DnrJ/EryC1/StrS family protein YP_928132.1 2720598 R 326297 CDS YP_928133.1 119775393 4604508 complement(2721681..2722262) 1 NC_008700.1 KEGG: bbr:BB0154 probable acetyltransferase; putative acetyltransferase 2722262 4604508 Sama_2258 Shewanella amazonensis SB2B putative acetyltransferase YP_928133.1 2721681 R 326297 CDS YP_928134.1 119775394 4604509 complement(2722266..2723222) 1 NC_008700.1 KEGG: msu:MS1500 MviM protein; MviM protein 2723222 4604509 Sama_2259 Shewanella amazonensis SB2B MviM protein YP_928134.1 2722266 R 326297 CDS YP_928135.1 119775395 4604510 complement(2723235..2724512) 1 NC_008700.1 KEGG: pcr:Pcryo_0613 UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 2724512 4604510 Sama_2260 Shewanella amazonensis SB2B UDP-glucose/GDP-mannose dehydrogenase YP_928135.1 2723235 R 326297 CDS YP_928136.1 119775396 4604511 complement(2724529..2725650) 1 NC_008700.1 KEGG: vvy:VV0341 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2725650 4604511 Sama_2261 Shewanella amazonensis SB2B UDP-N-acetylglucosamine 2-epimerase YP_928136.1 2724529 R 326297 CDS YP_928137.1 119775397 4604512 complement(2725839..2726822) 1 NC_008700.1 KEGG: son:SO3191 chain length determinant protein; chain length determinant protein 2726822 4604512 Sama_2262 Shewanella amazonensis SB2B chain length determinant protein YP_928137.1 2725839 R 326297 CDS YP_928138.1 119775398 4604513 complement(2726964..2727350) 1 NC_008700.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 2727350 4604513 Sama_2263 Shewanella amazonensis SB2B hypothetical protein YP_928138.1 2726964 R 326297 CDS YP_928139.1 119775399 4604514 complement(2727592..2730075) 1 NC_008700.1 KEGG: sde:Sde_1576 ClpX, ATPase regulatory subunit; ClpX, ATPase regulatory subunit 2730075 4604514 Sama_2264 Shewanella amazonensis SB2B ClpX, ATPase regulatory subunit YP_928139.1 2727592 R 326297 CDS YP_928140.1 119775400 4604515 complement(2730693..2731196) 1 NC_008700.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; transcriptional activator rfaH 2731196 4604515 Sama_2265 Shewanella amazonensis SB2B transcriptional activator rfaH YP_928140.1 2730693 R 326297 CDS YP_928141.1 119775401 4604516 2731622..2733094 1 NC_008700.1 KEGG: sdn:Sden_1357 amino acid/peptide transporter; amino acid/peptide transporter 2733094 4604516 Sama_2266 Shewanella amazonensis SB2B amino acid/peptide transporter YP_928141.1 2731622 D 326297 CDS YP_928142.1 119775402 4604517 complement(2733430..2734533) 1 NC_008700.1 KEGG: son:SO3196 response regulator; response regulator receiver protein 2734533 4604517 Sama_2267 Shewanella amazonensis SB2B response regulator receiver protein YP_928142.1 2733430 R 326297 CDS YP_928143.1 119775403 4604518 complement(2734603..2735433) 1 NC_008700.1 KEGG: son:SO3197 vacJ lipoprotein, putative; vacJ lipoprotein 2735433 4604518 Sama_2268 Shewanella amazonensis SB2B vacJ lipoprotein YP_928143.1 2734603 R 326297 CDS YP_928144.1 119775404 4604519 2735660..2737516 1 NC_008700.1 KEGG: son:SO3198 hypothetical protein; hypothetical protein 2737516 4604519 Sama_2269 Shewanella amazonensis SB2B hypothetical protein YP_928144.1 2735660 D 326297 CDS YP_928145.1 119775405 4604520 2737519..2737821 1 NC_008700.1 KEGG: sdn:Sden_1353 FlhB domain protein; FlhB domain-containing protein 2737821 4604520 Sama_2270 Shewanella amazonensis SB2B FlhB domain-containing protein YP_928145.1 2737519 D 326297 CDS YP_928146.1 119775406 4604521 complement(2737932..2738336) 1 NC_008700.1 KEGG: son:SO3200 hypothetical protein; hypothetical protein 2738336 4604521 Sama_2271 Shewanella amazonensis SB2B hypothetical protein YP_928146.1 2737932 R 326297 CDS YP_928147.1 119775407 4604522 complement(2738406..2738900) 1 NC_008700.1 KEGG: son:SO3202 purine-binding chemotaxis protein CheW; purine-binding chemotaxis protein CheW 2738900 4604522 Sama_2272 Shewanella amazonensis SB2B purine-binding chemotaxis protein CheW YP_928147.1 2738406 R 326297 CDS YP_928148.1 119775408 4604523 complement(2738908..2739987) 1 NC_008700.1 KEGG: son:SO3203 CheW domain protein; CheW domain-containing protein 2739987 4604523 Sama_2273 Shewanella amazonensis SB2B CheW domain-containing protein YP_928148.1 2738908 R 326297 CDS YP_928149.1 119775409 4604524 complement(2739971..2740762) 1 NC_008700.1 KEGG: son:SO3204 ParA family protein; ParA family protein 2740762 4604524 Sama_2274 Shewanella amazonensis SB2B ParA family protein YP_928149.1 2739971 R 326297 CDS YP_928150.1 119775410 4604525 complement(2740785..2741204) 1 NC_008700.1 KEGG: sdn:Sden_1348 hypothetical protein; hypothetical protein 2741204 4604525 Sama_2275 Shewanella amazonensis SB2B hypothetical protein YP_928150.1 2740785 R 326297 CDS YP_928151.1 119775411 4604526 complement(2741206..2742321) 1 NC_008700.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2742321 4604526 Sama_2276 Shewanella amazonensis SB2B chemotaxis-specific methylesterase YP_928151.1 2741206 R 326297 CDS YP_928152.1 119775412 4604527 complement(2742352..2744631) 1 NC_008700.1 KEGG: son:SO3207 chemotaxis protein; putative CheA signal transduction histidine kinase 2744631 4604527 Sama_2277 Shewanella amazonensis SB2B putative CheA signal transduction histidine kinase YP_928152.1 2742352 R 326297 CDS YP_928153.1 119775413 4604528 complement(2744647..2745384) 1 NC_008700.1 KEGG: son:SO3208 chemotaxis protein CheZ; putative chemotaxis phosphatase, CheZ 2745384 4604528 Sama_2278 Shewanella amazonensis SB2B putative chemotaxis phosphatase, CheZ YP_928153.1 2744647 R 326297 CDS YP_928154.1 119775414 4604529 complement(2745398..2745781) 1 NC_008700.1 KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 2745781 4604529 Sama_2279 Shewanella amazonensis SB2B response regulator receiver protein YP_928154.1 2745398 R 326297 CDS YP_928155.1 119775415 4604530 complement(2745826..2746545) 1 NC_008700.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2746545 fliA 4604530 fliA Shewanella amazonensis SB2B flagellar biosynthesis sigma factor YP_928155.1 2745826 R 326297 CDS YP_928156.1 119775416 4604531 complement(2746538..2747419) 1 NC_008700.1 KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2747419 4604531 Sama_2281 Shewanella amazonensis SB2B cobyrinic acid a,c-diamide synthase YP_928156.1 2746538 R 326297 CDS YP_928157.1 119775417 4604532 complement(2747424..2748815) 1 NC_008700.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2748815 flhF 4604532 flhF Shewanella amazonensis SB2B flagellar biosynthesis regulator FlhF YP_928157.1 2747424 R 326297 CDS YP_928158.1 119775418 4604533 complement(2748828..2750927) 1 NC_008700.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2750927 flhA 4604533 flhA Shewanella amazonensis SB2B flagellar biosynthesis protein FlhA YP_928158.1 2748828 R 326297 CDS YP_928159.1 119775419 4604534 complement(2751027..2752160) 1 NC_008700.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2752160 flhB 4604534 flhB Shewanella amazonensis SB2B flagellar biosynthesis protein FlhB YP_928159.1 2751027 R 326297 CDS YP_928160.1 119775420 4604535 complement(2752162..2752950) 1 NC_008700.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2752950 fliR 4604535 fliR Shewanella amazonensis SB2B flagellar biosynthesis protein FliR YP_928160.1 2752162 R 326297 CDS YP_928161.1 119775421 4604536 complement(2752950..2753219) 1 NC_008700.1 KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 2753219 4604536 Sama_2286 Shewanella amazonensis SB2B flagellar biosynthetic protein FliQ YP_928161.1 2752950 R 326297 CDS YP_928162.1 119775422 4604537 complement(2753225..2753974) 1 NC_008700.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2753974 fliP 4604537 fliP Shewanella amazonensis SB2B flagellar biosynthesis protein FliP YP_928162.1 2753225 R 326297 CDS YP_928163.1 119775423 4604538 complement(2753971..2754345) 1 NC_008700.1 KEGG: son:SO3219 flagellar protein FliO; flagellar protein FliO 2754345 4604538 Sama_2288 Shewanella amazonensis SB2B flagellar protein FliO YP_928163.1 2753971 R 326297 CDS YP_928164.1 119775424 4604539 complement(2754363..2754737) 1 NC_008700.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 2754737 fliN 4604539 fliN Shewanella amazonensis SB2B flagellar motor switch protein YP_928164.1 2754363 R 326297 CDS YP_928165.1 119775425 4604540 complement(2754749..2755777) 1 NC_008700.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2755777 fliM 4604540 fliM Shewanella amazonensis SB2B flagellar motor switch protein FliM YP_928165.1 2754749 R 326297 CDS YP_928166.1 119775426 4604541 complement(2755816..2756343) 1 NC_008700.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2756343 fliL 4604541 fliL Shewanella amazonensis SB2B flagellar basal body-associated protein FliL YP_928166.1 2755816 R 326297 CDS YP_928167.1 119775427 4604542 complement(2756429..2758210) 1 NC_008700.1 KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein FliK 2758210 4604542 Sama_2292 Shewanella amazonensis SB2B flagellar hook-length control protein FliK YP_928167.1 2756429 R 326297 CDS YP_928168.1 119775428 4604543 complement(2758327..2758773) 1 NC_008700.1 KEGG: son:SO3224 flagellar protein FliJ; flagellar protein FliJ 2758773 4604543 Sama_2293 Shewanella amazonensis SB2B flagellar protein FliJ YP_928168.1 2758327 R 326297 CDS YP_928169.1 119775429 4604544 complement(2758777..2760117) 1 NC_008700.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2760117 fliI 4604544 fliI Shewanella amazonensis SB2B flagellum-specific ATP synthase YP_928169.1 2758777 R 326297 CDS YP_928170.1 119775430 4604545 complement(2760086..2760988) 1 NC_008700.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2760988 fliH 4604545 fliH Shewanella amazonensis SB2B flagellar assembly protein H YP_928170.1 2760086 R 326297 CDS YP_928171.1 119775431 4604546 complement(2760988..2762025) 1 NC_008700.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2762025 fliG 4604546 fliG Shewanella amazonensis SB2B flagellar motor switch protein G YP_928171.1 2760988 R 326297 CDS YP_928172.1 119775432 4604547 complement(2762018..2763715) 1 NC_008700.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2763715 fliF 4604547 fliF Shewanella amazonensis SB2B flagellar MS-ring protein YP_928172.1 2762018 R 326297 CDS YP_928173.1 119775433 4604548 complement(2763740..2764075) 1 NC_008700.1 KEGG: sdn:Sden_1323 flagellar hook-basal body complex protein (FliE); flagellar hook-basal body complex protein (FliE) 2764075 4604548 Sama_2298 Shewanella amazonensis SB2B flagellar hook-basal body complex protein (FliE) YP_928173.1 2763740 R 326297 CDS YP_928174.1 119775434 4604549 complement(2764199..2765539) 1 NC_008700.1 KEGG: son:SO3230 flagellar regulatory protein C; response regulator receiver protein 2765539 4604549 Sama_2299 Shewanella amazonensis SB2B response regulator receiver protein YP_928174.1 2764199 R 326297 CDS YP_928175.1 119775435 4604550 complement(2765532..2766605) 1 NC_008700.1 KEGG: son:SO3231 flagellar regulatory protein B; flagellar regulatory protein B 2766605 4604550 Sama_2300 Shewanella amazonensis SB2B flagellar regulatory protein B YP_928175.1 2765532 R 326297 CDS YP_928176.1 119775436 4604551 complement(2766698..2768128) 1 NC_008700.1 KEGG: son:SO3232 flagellar regulatory protein A; response regulator receiver protein 2768128 4604551 Sama_2301 Shewanella amazonensis SB2B response regulator receiver protein YP_928176.1 2766698 R 326297 CDS YP_928177.1 119775437 4604552 complement(2768418..2768828) 1 NC_008700.1 flagellin specific chaperone; flagellar protein FliS 2768828 fliS 4604552 fliS Shewanella amazonensis SB2B flagellar protein FliS YP_928177.1 2768418 R 326297 CDS YP_928178.1 119775438 4604553 complement(2768835..2769155) 1 NC_008700.1 KEGG: son:SO3234 hypothetical protein; hypothetical protein 2769155 4604553 Sama_2303 Shewanella amazonensis SB2B hypothetical protein YP_928178.1 2768835 R 326297 CDS YP_928179.1 119775439 4604554 complement(2769185..2770549) 1 NC_008700.1 KEGG: sdn:Sden_1317 flagellar hook-associated 2-like protein; flagellar hook-associated 2-like protein 2770549 4604554 Sama_2304 Shewanella amazonensis SB2B flagellar hook-associated 2-like protein YP_928179.1 2769185 R 326297 CDS YP_928180.1 119775440 4604555 complement(2770575..2770982) 1 NC_008700.1 KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG 2770982 4604555 Sama_2305 Shewanella amazonensis SB2B flagellar protein FlaG YP_928180.1 2770575 R 326297 CDS YP_928181.1 119775441 4604556 complement(2771108..2771926) 1 NC_008700.1 KEGG: sdn:Sden_1314 flagellin-like protein; flagellin-like protein 2771926 4604556 Sama_2306 Shewanella amazonensis SB2B flagellin-like protein YP_928181.1 2771108 R 326297 CDS YP_928182.1 119775442 4604557 complement(2772176..2772997) 1 NC_008700.1 KEGG: sdn:Sden_1314 flagellin-like protein; flagellin-like protein 2772997 4604557 Sama_2307 Shewanella amazonensis SB2B flagellin-like protein YP_928182.1 2772176 R 326297 CDS YP_928183.1 119775443 4604558 complement(2773090..2774295) 1 NC_008700.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 2774295 flgL 4604558 flgL Shewanella amazonensis SB2B flagellar hook-associated protein FlgL YP_928183.1 2773090 R 326297 CDS YP_928184.1 119775444 4604559 complement(2774308..2776224) 1 NC_008700.1 KEGG: sdn:Sden_1312 flagellar hook-associated protein; flagellar hook-associated protein 2776224 4604559 Sama_2309 Shewanella amazonensis SB2B flagellar hook-associated protein YP_928184.1 2774308 R 326297 CDS YP_928185.1 119775445 4604560 complement(2776246..2777364) 1 NC_008700.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2777364 flgJ 4604560 flgJ Shewanella amazonensis SB2B flagellar rod assembly protein/muramidase FlgJ YP_928185.1 2776246 R 326297 CDS YP_928186.1 119775446 4604561 complement(2777392..2778483) 1 NC_008700.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2778483 flgI 4604561 flgI Shewanella amazonensis SB2B flagellar basal body P-ring protein YP_928186.1 2777392 R 326297 CDS YP_928187.1 119775447 4604562 complement(2778496..2779170) 1 NC_008700.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 2779170 flgH 4604562 flgH Shewanella amazonensis SB2B flagellar basal body L-ring protein YP_928187.1 2778496 R 326297 CDS YP_928188.1 119775448 4604563 complement(2779183..2779971) 1 NC_008700.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2779971 flgG 4604563 flgG Shewanella amazonensis SB2B flagellar basal body rod protein FlgG YP_928188.1 2779183 R 326297 CDS YP_928189.1 119775449 4604564 complement(2779984..2780727) 1 NC_008700.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2780727 flgF 4604564 flgF Shewanella amazonensis SB2B flagellar basal body rod protein FlgF YP_928189.1 2779984 R 326297 CDS YP_928190.1 119775450 4604565 complement(2780894..2782255) 1 NC_008700.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2782255 flgE 4604565 flgE Shewanella amazonensis SB2B flagellar hook protein FlgE YP_928190.1 2780894 R 326297 CDS YP_928191.1 119775451 4604566 complement(2782289..2783017) 1 NC_008700.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 2783017 flgD 4604566 flgD Shewanella amazonensis SB2B flagellar basal body rod modification protein YP_928191.1 2782289 R 326297 CDS YP_928192.1 119775452 4604567 complement(2783044..2783457) 1 NC_008700.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2783457 flgC 4604567 flgC Shewanella amazonensis SB2B flagellar basal body rod protein FlgC YP_928192.1 2783044 R 326297 CDS YP_928193.1 119775453 4604568 complement(2783460..2783858) 1 NC_008700.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 2783858 flgB 4604568 flgB Shewanella amazonensis SB2B flagellar basal body rod protein FlgB YP_928193.1 2783460 R 326297 CDS YP_928194.1 119775454 4604569 complement(2784000..2784833) 1 NC_008700.1 KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; protein-glutamate O-methyltransferase 2784833 4604569 Sama_2319 Shewanella amazonensis SB2B protein-glutamate O-methyltransferase YP_928194.1 2784000 R 326297 CDS YP_928195.1 119775455 4604570 complement(2784994..2785914) 1 NC_008700.1 KEGG: son:SO3252 chemotaxis protein CheV; chemotaxis protein CheV 2785914 4604570 Sama_2320 Shewanella amazonensis SB2B chemotaxis protein CheV YP_928195.1 2784994 R 326297 CDS YP_928196.1 119775456 4604571 2786118..2786825 1 NC_008700.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2786825 flgA 4604571 flgA Shewanella amazonensis SB2B flagellar basal body P-ring biosynthesis protein FlgA YP_928196.1 2786118 D 326297 CDS YP_928197.1 119775457 4604572 2786900..2787235 1 NC_008700.1 KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; putative anti-sigma-28 factor, FlgM 2787235 4604572 Sama_2322 Shewanella amazonensis SB2B putative anti-sigma-28 factor, FlgM YP_928197.1 2786900 D 326297 CDS YP_928198.1 119775458 4604573 2787344..2787778 1 NC_008700.1 KEGG: son:SO3255 flagellar biosynthetic protein FlgN; flagellar biosynthetic protein FlgN 2787778 4604573 Sama_2323 Shewanella amazonensis SB2B flagellar biosynthetic protein FlgN YP_928198.1 2787344 D 326297 CDS YP_928199.1 119775459 4604574 complement(2787911..2788366) 1 NC_008700.1 KEGG: son:SO3256 hypothetical protein; hypothetical protein 2788366 4604574 Sama_2324 Shewanella amazonensis SB2B hypothetical protein YP_928199.1 2787911 R 326297 CDS YP_928200.1 119775460 4604575 complement(2788363..2788995) 1 NC_008700.1 KEGG: son:SO3257 hypothetical protein; hypothetical protein 2788995 4604575 Sama_2325 Shewanella amazonensis SB2B hypothetical protein YP_928200.1 2788363 R 326297 CDS YP_928201.1 119775461 4604576 2789281..2790456 1 NC_008700.1 KEGG: son:SO3258 hypothetical protein; hypothetical protein 2790456 4604576 Sama_2326 Shewanella amazonensis SB2B hypothetical protein YP_928201.1 2789281 D 326297 CDS YP_928202.1 119775462 4606000 complement(2791205..2792869) 1 NC_008700.1 KEGG: ilo:IL1296 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2792869 4606000 Sama_2327 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928202.1 2791205 R 326297 CDS YP_928203.1 119775463 4604578 2793695..2794876 1 NC_008700.1 KEGG: vfi:VF0140 UDP-N-acetylglucosamine 4,6-dehydratase; UDP-N-acetylglucosamine 4,6-dehydratase 2794876 4604578 Sama_2328 Shewanella amazonensis SB2B UDP-N-acetylglucosamine 4,6-dehydratase YP_928203.1 2793695 D 326297 CDS YP_928204.1 119775464 4604579 2794887..2796044 1 NC_008700.1 KEGG: vvu:VV10810 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 2796044 4604579 Sama_2329 Shewanella amazonensis SB2B pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_928204.1 2794887 D 326297 CDS YP_928205.1 119775465 4604580 2796037..2797044 1 NC_008700.1 KEGG: vvu:VV10809 hypothetical protein; hypothetical protein 2797044 4604580 Sama_2330 Shewanella amazonensis SB2B hypothetical protein YP_928205.1 2796037 D 326297 CDS YP_928206.1 119775466 4604581 2797037..2798035 1 NC_008700.1 KEGG: vvu:VV10808 sialic acid synthase; N-acylneuraminate-9-phosphate synthase 2798035 4604581 Sama_2331 Shewanella amazonensis SB2B N-acylneuraminate-9-phosphate synthase YP_928206.1 2797037 D 326297 CDS YP_928207.1 119775467 4604582 2798035..2799201 1 NC_008700.1 KEGG: vvu:VV10807 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2799201 4604582 Sama_2332 Shewanella amazonensis SB2B UDP-N-acetylglucosamine 2-epimerase YP_928207.1 2798035 D 326297 CDS YP_928208.1 119775468 4604583 2799182..2800171 1 NC_008700.1 KEGG: vvu:VV10806 hypothetical protein; hypothetical protein 2800171 4604583 Sama_2333 Shewanella amazonensis SB2B hypothetical protein YP_928208.1 2799182 D 326297 CDS YP_928209.1 119775469 4604584 2800168..2800665 1 NC_008700.1 KEGG: vvu:VV10805 acetyltransferase; acetyltransferase 2800665 4604584 Sama_2334 Shewanella amazonensis SB2B acetyltransferase YP_928209.1 2800168 D 326297 CDS YP_928210.1 119775470 4604585 2800658..2801716 1 NC_008700.1 KEGG: vpa:VP0202 putative sugar-phosphate nucleotide transferase; putative sugar-phosphate nucleotide transferase 2801716 4604585 Sama_2335 Shewanella amazonensis SB2B putative sugar-phosphate nucleotide transferase YP_928210.1 2800658 D 326297 CDS YP_928211.1 119775471 4604586 2801716..2802414 1 NC_008700.1 KEGG: vvu:VV10803 N-acylneuraminate cytidylyltransferase; N-acylneuraminate cytidylyltransferase 2802414 4604586 Sama_2336 Shewanella amazonensis SB2B N-acylneuraminate cytidylyltransferase YP_928211.1 2801716 D 326297 CDS YP_928212.1 119775472 4604587 2802822..2805302 1 NC_008700.1 KEGG: son:SO3273 hypothetical protein; hypothetical protein 2805302 4604587 Sama_2337 Shewanella amazonensis SB2B hypothetical protein YP_928212.1 2802822 D 326297 CDS YP_928213.1 119775473 4604588 2805398..2805877 1 NC_008700.1 KEGG: son:SO3274 hypothetical protein; hypothetical protein 2805877 4604588 Sama_2338 Shewanella amazonensis SB2B hypothetical protein YP_928213.1 2805398 D 326297 CDS YP_928214.1 119775474 4604589 2805933..2806484 1 NC_008700.1 KEGG: sdn:Sden_1281 hypothetical protein; hypothetical protein 2806484 4604589 Sama_2339 Shewanella amazonensis SB2B hypothetical protein YP_928214.1 2805933 D 326297 CDS YP_928215.1 119775475 4604590 complement(2806589..2807587) 1 NC_008700.1 KEGG: son:SO3276 hypothetical protein; hypothetical protein 2807587 4604590 Sama_2340 Shewanella amazonensis SB2B hypothetical protein YP_928215.1 2806589 R 326297 CDS YP_928216.1 119775476 4604591 complement(2807634..2808254) 1 NC_008700.1 KEGG: sdn:Sden_1279 regulatory protein, TetR; TetR family transcriptional regulator 2808254 4604591 Sama_2341 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_928216.1 2807634 R 326297 CDS YP_928217.1 119775477 4604592 2808408..2809520 1 NC_008700.1 KEGG: sdn:Sden_1278 secretion protein HlyD; secretion protein HlyD 2809520 4604592 Sama_2342 Shewanella amazonensis SB2B secretion protein HlyD YP_928217.1 2808408 D 326297 CDS YP_928218.1 119775478 4604593 2809524..2812592 1 NC_008700.1 KEGG: sdn:Sden_1277 acriflavin resistance protein; acriflavin resistance protein 2812592 4604593 Sama_2343 Shewanella amazonensis SB2B acriflavin resistance protein YP_928218.1 2809524 D 326297 CDS YP_928219.1 119775479 4604594 complement(2812580..2812825) 1 NC_008700.1 KEGG: son:SO3280 hypothetical protein; hypothetical protein 2812825 4604594 Sama_2344 Shewanella amazonensis SB2B hypothetical protein YP_928219.1 2812580 R 326297 CDS YP_928220.1 119775480 4604595 2813492..2815492 1 NC_008700.1 KEGG: son:SO3282 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2815492 4604595 Sama_2345 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928220.1 2813492 D 326297 CDS YP_928221.1 119775481 4604596 complement(2815645..2815923) 1 NC_008700.1 KEGG: xcv:XCV3738 putative regulatory protein, TfoX family; TfoX family regulatory protein 2815923 4604596 Sama_2346 Shewanella amazonensis SB2B TfoX family regulatory protein YP_928221.1 2815645 R 326297 CDS YP_928222.1 119775482 4604597 complement(2816027..2816140) 1 NC_008700.1 KEGG: sdn:Sden_1276 Cyd operon protein YbgT; Cyd operon protein YbgT 2816140 4604597 Sama_2347 Shewanella amazonensis SB2B Cyd operon protein YbgT YP_928222.1 2816027 R 326297 CDS YP_928223.1 119775483 4604598 complement(2816153..2817292) 1 NC_008700.1 KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome bd-I oxidase subunit II 2817292 4604598 Sama_2348 Shewanella amazonensis SB2B cytochrome bd-I oxidase subunit II YP_928223.1 2816153 R 326297 CDS YP_928224.1 119775484 4604599 complement(2817308..2818864) 1 NC_008700.1 KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd-I oxidase subunit I 2818864 4604599 Sama_2349 Shewanella amazonensis SB2B cytochrome bd-I oxidase subunit I YP_928224.1 2817308 R 326297 CDS YP_928225.1 119775485 4604600 complement(2819978..2823859) 1 NC_008700.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2823859 4604600 Sama_2350 Shewanella amazonensis SB2B phosphoribosylformylglycinamidine synthase YP_928225.1 2819978 R 326297 CDS YP_928226.1 119775486 4604601 2824025..2825533 1 NC_008700.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2825533 4604601 Sama_2351 Shewanella amazonensis SB2B putative transglycosylase YP_928226.1 2824025 D 326297 CDS YP_928227.1 119775487 4604602 complement(2825833..2826405) 1 NC_008700.1 KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; cytidine/deoxycytidylate deaminase family protein 2826405 4604602 Sama_2352 Shewanella amazonensis SB2B cytidine/deoxycytidylate deaminase family protein YP_928227.1 2825833 R 326297 CDS YP_928228.1 119775488 4604603 2826457..2827323 1 NC_008700.1 KEGG: dps:DP0462 hypothetical protein; diguanylate cyclase 2827323 4604603 Sama_2353 Shewanella amazonensis SB2B diguanylate cyclase YP_928228.1 2826457 D 326297 CDS YP_928229.1 119775489 4604604 complement(2827640..2828020) 1 NC_008700.1 KEGG: cvi:CV0615 hypothetical protein; hypothetical protein 2828020 4604604 Sama_2354 Shewanella amazonensis SB2B hypothetical protein YP_928229.1 2827640 R 326297 CDS YP_928230.1 119775490 4604605 complement(2828187..2831537) 1 NC_008700.1 KEGG: ecp:ECP_2709 hypothetical protein; hypothetical protein 2831537 4604605 Sama_2355 Shewanella amazonensis SB2B hypothetical protein YP_928230.1 2828187 R 326297 CDS YP_928231.1 119775491 4606040 2832178..2832468 1 NC_008700.1 hypothetical protein 2832468 4606040 Sama_2357 Shewanella amazonensis SB2B hypothetical protein YP_928231.1 2832178 D 326297 CDS YP_928232.1 119775492 4604607 complement(2832531..2834108) 1 NC_008700.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2834108 guaA 4604607 guaA Shewanella amazonensis SB2B GMP synthase YP_928232.1 2832531 R 326297 CDS YP_928233.1 119775493 4604608 complement(2834206..2835672) 1 NC_008700.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2835672 4604608 Sama_2359 Shewanella amazonensis SB2B inosine 5'-monophosphate dehydrogenase YP_928233.1 2834206 R 326297 CDS YP_928234.1 119775494 4604609 2835793..2837136 1 NC_008700.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2837136 xseA 4604609 xseA Shewanella amazonensis SB2B exodeoxyribonuclease VII large subunit YP_928234.1 2835793 D 326297 CDS YP_928235.1 119775495 4604610 complement(2837253..2838719) 1 NC_008700.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2838719 engA 4604610 engA Shewanella amazonensis SB2B GTP-binding protein EngA YP_928235.1 2837253 R 326297 CDS YP_928236.1 119775496 4604611 complement(2838800..2839987) 1 NC_008700.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2839987 4604611 Sama_2362 Shewanella amazonensis SB2B outer membrane protein assembly complex subunit YfgL YP_928236.1 2838800 R 326297 CDS YP_928237.1 119775497 4604612 complement(2839999..2840619) 1 NC_008700.1 KEGG: son:SO3310 hypothetical protein; hypothetical protein 2840619 4604612 Sama_2363 Shewanella amazonensis SB2B hypothetical protein YP_928237.1 2839999 R 326297 CDS YP_928238.1 119775498 4604613 complement(2840656..2841930) 1 NC_008700.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2841930 hisS 4604613 hisS Shewanella amazonensis SB2B histidyl-tRNA synthetase YP_928238.1 2840656 R 326297 CDS YP_928239.1 119775499 4604614 complement(2842072..2843190) 1 NC_008700.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2843190 ispG 4604614 ispG Shewanella amazonensis SB2B 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_928239.1 2842072 R 326297 CDS YP_928240.1 119775500 4604615 complement(2843218..2844240) 1 NC_008700.1 KEGG: son:SO3313 hypothetical protein; hypothetical protein 2844240 4604615 Sama_2366 Shewanella amazonensis SB2B hypothetical protein YP_928240.1 2843218 R 326297 CDS YP_928241.1 119775501 4604616 complement(2844237..2845025) 1 NC_008700.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; fimbrial biogenesis and twitching motility protein 2845025 4604616 Sama_2367 Shewanella amazonensis SB2B fimbrial biogenesis and twitching motility protein YP_928241.1 2844237 R 326297 CDS YP_928242.1 119775502 4604617 complement(2845058..2846179) 1 NC_008700.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2846179 4604617 Sama_2368 Shewanella amazonensis SB2B ribosomal RNA large subunit methyltransferase N YP_928242.1 2845058 R 326297 CDS YP_928243.1 119775503 4604618 2846327..2847397 1 NC_008700.1 KEGG: son:SO3316 hypothetical protein; hypothetical protein 2847397 4604618 Sama_2369 Shewanella amazonensis SB2B hypothetical protein YP_928243.1 2846327 D 326297 CDS YP_928244.1 119775504 4604619 2847440..2849161 1 NC_008700.1 KEGG: son:SO3317 5'-nucleotidase, putative; 5'-nucleotidase 2849161 4604619 Sama_2370 Shewanella amazonensis SB2B 5'-nucleotidase YP_928244.1 2847440 D 326297 CDS YP_928245.1 119775505 4604620 complement(2849171..2850133) 1 NC_008700.1 KEGG: son:SO3323 acetyltransferase, GNAT family; hypothetical protein 2850133 4604620 Sama_2371 Shewanella amazonensis SB2B hypothetical protein YP_928245.1 2849171 R 326297 CDS YP_928246.1 119775506 4604621 complement(2850225..2850518) 1 NC_008700.1 KEGG: son:SO3326 hypothetical protein; hypothetical protein 2850518 4604621 Sama_2372 Shewanella amazonensis SB2B hypothetical protein YP_928246.1 2850225 R 326297 CDS YP_928247.1 119775507 4604622 2850876..2851619 1 NC_008700.1 KEGG: son:SO3331 hypothetical protein; hypothetical protein 2851619 4604622 Sama_2373 Shewanella amazonensis SB2B hypothetical protein YP_928247.1 2850876 D 326297 CDS YP_928248.1 119775508 4604623 2851579..2851950 1 NC_008700.1 KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator 2851950 4604623 Sama_2374 Shewanella amazonensis SB2B CopG family transcriptional regulator YP_928248.1 2851579 D 326297 CDS YP_928249.1 119775509 4604624 2852135..2853574 1 NC_008700.1 KEGG: son:SO3333 transporter, putative; transporter 2853574 4604624 Sama_2375 Shewanella amazonensis SB2B transporter YP_928249.1 2852135 D 326297 CDS YP_928250.1 119775510 4604625 2853580..2855325 1 NC_008700.1 KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase 2855325 4604625 Sama_2376 Shewanella amazonensis SB2B diguanylate cyclase YP_928250.1 2853580 D 326297 CDS YP_928251.1 119775511 4604626 2855374..2856198 1 NC_008700.1 KEGG: son:SO3335 hypothetical protein; hypothetical protein 2856198 4604626 Sama_2377 Shewanella amazonensis SB2B hypothetical protein YP_928251.1 2855374 D 326297 CDS YP_928252.1 119775512 4604627 2856236..2856706 1 NC_008700.1 KEGG: son:SO3336 hypothetical protein; hypothetical protein 2856706 4604627 Sama_2378 Shewanella amazonensis SB2B hypothetical protein YP_928252.1 2856236 D 326297 CDS YP_928253.1 119775513 4604628 complement(2856700..2858166) 1 NC_008700.1 KEGG: sdn:Sden_1247 hypothetical protein; putative signal transduction protein 2858166 4604628 Sama_2379 Shewanella amazonensis SB2B putative signal transduction protein YP_928253.1 2856700 R 326297 CDS YP_928254.1 119775514 4604629 complement(2858428..2859747) 1 NC_008700.1 KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 2859747 4604629 Sama_2380 Shewanella amazonensis SB2B isocitrate lyase YP_928254.1 2858428 R 326297 CDS YP_928255.1 119775515 4604630 complement(2859826..2861457) 1 NC_008700.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2861457 4604630 Sama_2381 Shewanella amazonensis SB2B malate synthase YP_928255.1 2859826 R 326297 CDS YP_928256.1 119775516 4604631 complement(2862794..2864743) 1 NC_008700.1 KEGG: son:SO1480 GGDEF family protein; diguanylate cyclase 2864743 4604631 Sama_2382 Shewanella amazonensis SB2B diguanylate cyclase YP_928256.1 2862794 R 326297 CDS YP_928257.1 119775517 4604632 complement(2864744..2864959) 1 NC_008700.1 KEGG: son:SO1479 hypothetical protein; hypothetical protein 2864959 4604632 Sama_2383 Shewanella amazonensis SB2B hypothetical protein YP_928257.1 2864744 R 326297 CDS YP_928258.1 119775518 4604633 complement(2865014..2865805) 1 NC_008700.1 KEGG: son:SO1478 methylase, putative; methylase 2865805 4604633 Sama_2384 Shewanella amazonensis SB2B methylase YP_928258.1 2865014 R 326297 CDS YP_928259.1 119775519 4604634 2866119..2866610 1 NC_008700.1 KEGG: son:SO1476 small protein A; small protein A 2866610 4604634 Sama_2385 Shewanella amazonensis SB2B small protein A YP_928259.1 2866119 D 326297 CDS YP_928260.1 119775520 4604635 complement(2866727..2867065) 1 NC_008700.1 KEGG: sdn:Sden_1241 protein of unknown function UPF0125; hypothetical protein 2867065 4604635 Sama_2386 Shewanella amazonensis SB2B hypothetical protein YP_928260.1 2866727 R 326297 CDS YP_928261.1 119775521 4604636 complement(2867055..2867489) 1 NC_008700.1 KEGG: son:SO1474 hypothetical protein; hypothetical protein 2867489 4604636 Sama_2387 Shewanella amazonensis SB2B hypothetical protein YP_928261.1 2867055 R 326297 CDS YP_928262.1 119775522 4604637 2867670..2868152 1 NC_008700.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2868152 smpB 4604637 smpB Shewanella amazonensis SB2B SsrA-binding protein YP_928262.1 2867670 D 326297 CDS YP_928263.1 119775523 4606001 complement(2868769..2869650) 1 NC_008700.1 KEGG: son:SO2455 transcriptional regulator, LysR family; LysR family transcriptional regulator 2869650 4606001 Sama_2389 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928263.1 2868769 R 326297 CDS YP_928264.1 119775524 4604639 2869829..2871022 1 NC_008700.1 KEGG: rso:RSc1153 putative transmembrane efflux transmembrane protein; putative transmembrane efflux transmembrane protein 2871022 4604639 Sama_2390 Shewanella amazonensis SB2B putative transmembrane efflux transmembrane protein YP_928264.1 2869829 D 326297 CDS YP_928265.1 119775525 4604640 complement(2871106..2872278) 1 NC_008700.1 KEGG: bha:BH1129 isoaspartyl dipeptidase; isoaspartyl dipeptidase 2872278 4604640 Sama_2391 Shewanella amazonensis SB2B isoaspartyl dipeptidase YP_928265.1 2871106 R 326297 CDS YP_928266.1 119775526 4604641 complement(2872278..2873732) 1 NC_008700.1 KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein 2873732 4604641 Sama_2392 Shewanella amazonensis SB2B hypothetical protein YP_928266.1 2872278 R 326297 CDS YP_928267.1 119775527 4604642 complement(2873783..2876383) 1 NC_008700.1 KEGG: ccr:CC0579 TonB-dependent receptor; TonB-dependent receptor 2876383 4604642 Sama_2393 Shewanella amazonensis SB2B TonB-dependent receptor YP_928267.1 2873783 R 326297 CDS YP_928268.1 119775528 4604643 2876743..2878422 1 NC_008700.1 KEGG: ilo:IL2428 secreted protein related to cyanophycinase CphE; cyanophycinase-related exopeptidase-like protein 2878422 4604643 Sama_2394 Shewanella amazonensis SB2B cyanophycinase-related exopeptidase-like protein YP_928268.1 2876743 D 326297 CDS YP_928269.1 119775529 4604644 complement(2878443..2879168) 1 NC_008700.1 hypothetical protein 2879168 4604644 Sama_2395 Shewanella amazonensis SB2B hypothetical protein YP_928269.1 2878443 R 326297 CDS YP_928270.1 119775530 4604645 2879608..2880189 1 NC_008700.1 KEGG: pae:PA0307 hypothetical protein; hypothetical protein 2880189 4604645 Sama_2396 Shewanella amazonensis SB2B hypothetical protein YP_928270.1 2879608 D 326297 CDS YP_928271.1 119775531 4604646 2880177..2881769 1 NC_008700.1 KEGG: psp:PSPPH_5044 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 2881769 4604646 Sama_2397 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928271.1 2880177 D 326297 CDS YP_928272.1 119775532 4604647 complement(2881844..2882125) 1 NC_008700.1 KEGG: sdn:Sden_0849 hypothetical protein; hypothetical protein 2882125 4604647 Sama_2398 Shewanella amazonensis SB2B hypothetical protein YP_928272.1 2881844 R 326297 CDS YP_928273.1 119775533 4604648 complement(2882241..2882846) 1 NC_008700.1 KEGG: son:SO1416 DNA-binding response regulator; response regulator receiver protein 2882846 4604648 Sama_2399 Shewanella amazonensis SB2B response regulator receiver protein YP_928273.1 2882241 R 326297 CDS YP_928274.1 119775534 4604649 complement(2882839..2884665) 1 NC_008700.1 KEGG: son:SO1417 sensor histidine kinase; sensor histidine kinase 2884665 4604649 Sama_2400 Shewanella amazonensis SB2B sensor histidine kinase YP_928274.1 2882839 R 326297 CDS YP_928275.1 119775535 4604650 2884839..2886356 1 NC_008700.1 KEGG: wsu:WS0124 flavocytochrome c flavin subunit; flavocytochrome c flavin subunit 2886356 4604650 Sama_2401 Shewanella amazonensis SB2B flavocytochrome c flavin subunit YP_928275.1 2884839 D 326297 CDS YP_928276.1 119775536 4604651 2886367..2886735 1 NC_008700.1 KEGG: son:SO1413 tetraheme cytochrome c, putative; tetraheme cytochrome c 2886735 4604651 Sama_2402 Shewanella amazonensis SB2B tetraheme cytochrome c YP_928276.1 2886367 D 326297 CDS YP_928277.1 119775537 4604652 2886749..2887804 1 NC_008700.1 KEGG: son:SO1420 outer membrane porin, putative; outer membrane porin 2887804 4604652 Sama_2403 Shewanella amazonensis SB2B outer membrane porin YP_928277.1 2886749 D 326297 CDS YP_928278.1 119775538 4604653 complement(2887909..2889132) 1 NC_008700.1 KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2889132 4604653 Sama_2404 Shewanella amazonensis SB2B DEAD/DEAH box helicase YP_928278.1 2887909 R 326297 CDS YP_928279.1 119775539 4604654 complement(2889190..2891445) 1 NC_008700.1 KEGG: son:SO3389 sensory box protein; sensory box protein 2891445 4604654 Sama_2405 Shewanella amazonensis SB2B sensory box protein YP_928279.1 2889190 R 326297 CDS YP_928280.1 119775540 4604655 2891733..2894108 1 NC_008700.1 KEGG: son:SO3391 ATP-dependent protease, putative; ATP-dependent protease 2894108 4604655 Sama_2406 Shewanella amazonensis SB2B ATP-dependent protease YP_928280.1 2891733 D 326297 CDS YP_928281.1 119775541 4604656 complement(2894172..2895215) 1 NC_008700.1 KEGG: vch:VCA0998 NADH-dependent flavin oxidoreductase, Oye family; Oye family NADH-dependent flavin oxidoreductase 2895215 4604656 Sama_2407 Shewanella amazonensis SB2B Oye family NADH-dependent flavin oxidoreductase YP_928281.1 2894172 R 326297 CDS YP_928282.1 119775542 4604657 2895344..2895922 1 NC_008700.1 KEGG: son:SO3393 transcriptional regulator, TetR family; TetR family transcriptional regulator 2895922 4604657 Sama_2408 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_928282.1 2895344 D 326297 CDS YP_928283.1 119775543 4604658 complement(2896041..2896337) 1 NC_008700.1 KEGG: son:SO3395 hypothetical protein; hypothetical protein 2896337 4604658 Sama_2409 Shewanella amazonensis SB2B hypothetical protein YP_928283.1 2896041 R 326297 CDS YP_928284.1 119775544 4604659 2896638..2897360 1 NC_008700.1 KEGG: son:SO3401 hypothetical protein; hypothetical protein 2897360 4604659 Sama_2410 Shewanella amazonensis SB2B hypothetical protein YP_928284.1 2896638 D 326297 CDS YP_928285.1 119775545 4604660 complement(2897450..2899003) 1 NC_008700.1 KEGG: son:SO0002 proton/peptide symporter family protein; proton/peptide symporter family protein 2899003 4604660 Sama_2411 Shewanella amazonensis SB2B proton/peptide symporter family protein YP_928285.1 2897450 R 326297 CDS YP_928286.1 119775546 4604661 complement(2899221..2899667) 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 2899667 4604661 Sama_2412 Shewanella amazonensis SB2B IS1004 transposase YP_928286.1 2899221 R 326297 CDS YP_928287.1 119775547 4604662 complement(2899885..2901465) 1 NC_008700.1 KEGG: cps:CPS_2871 cold-active alkaline serine protease; cold-active alkaline serine protease 2901465 4604662 Sama_2413 Shewanella amazonensis SB2B cold-active alkaline serine protease YP_928287.1 2899885 R 326297 CDS YP_928288.1 119775548 4604663 2901872..2902309 1 NC_008700.1 KEGG: she:Shewmr4_1145 OsmC family protein; OsmC family protein 2902309 4604663 Sama_2414 Shewanella amazonensis SB2B OsmC family protein YP_928288.1 2901872 D 326297 CDS YP_928289.1 119775549 4604664 complement(2902417..2905671) 1 NC_008700.1 KEGG: son:SO3411 protease, putative; protease 2905671 4604664 Sama_2415 Shewanella amazonensis SB2B protease YP_928289.1 2902417 R 326297 CDS YP_928290.1 119775550 4604665 complement(2905885..2907759) 1 NC_008700.1 KEGG: sdn:Sden_2554 peptidase M61; peptidase M61 2907759 4604665 Sama_2416 Shewanella amazonensis SB2B peptidase M61 YP_928290.1 2905885 R 326297 CDS YP_928291.1 119775551 4604666 2907836..2909986 1 NC_008700.1 KEGG: son:SO1552 TPR domain protein; hypothetical protein 2909986 4604666 Sama_2417 Shewanella amazonensis SB2B hypothetical protein YP_928291.1 2907836 D 326297 CDS YP_928292.1 119775552 4604667 2910129..2911685 1 NC_008700.1 KEGG: son:SO1551 GGDEF domain protein protein; diguanylate cyclase 2911685 4604667 Sama_2418 Shewanella amazonensis SB2B diguanylate cyclase YP_928292.1 2910129 D 326297 CDS YP_928293.1 119775553 4604668 2911732..2913087 1 NC_008700.1 KEGG: son:SO1550 hypothetical protein; hypothetical protein 2913087 4604668 Sama_2419 Shewanella amazonensis SB2B hypothetical protein YP_928293.1 2911732 D 326297 CDS YP_928294.1 119775554 4604669 2913084..2913845 1 NC_008700.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 2913845 xni 4604669 xni Shewanella amazonensis SB2B exonuclease IX YP_928294.1 2913084 D 326297 CDS YP_928295.1 119775555 4604670 2914004..2914393 1 NC_008700.1 KEGG: son:SO1548 hypothetical protein; hypothetical protein 2914393 4604670 Sama_2421 Shewanella amazonensis SB2B hypothetical protein YP_928295.1 2914004 D 326297 CDS YP_928296.1 119775556 4604671 complement(2914473..2917301) 1 NC_008700.1 KEGG: sdn:Sden_2560 peptidase S9, prolyl oligopeptidase active site region; peptidase S9, prolyl oligopeptidase active site region 2917301 4604671 Sama_2422 Shewanella amazonensis SB2B peptidase S9, prolyl oligopeptidase active site region YP_928296.1 2914473 R 326297 CDS YP_928297.1 119775557 4604672 2917552..2918562 1 NC_008700.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 2918562 4604672 Sama_2423 Shewanella amazonensis SB2B isocitrate dehydrogenase YP_928297.1 2917552 D 326297 CDS YP_928298.1 119775558 4604673 2918971..2919582 1 NC_008700.1 KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family; peptidyl-prolyl cis-trans isomerase 2919582 4604673 Sama_2424 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase YP_928298.1 2918971 D 326297 CDS YP_928299.1 119775559 4604674 2920245..2920820 1 NC_008700.1 hypothetical protein 2920820 4604674 Sama_2425 Shewanella amazonensis SB2B hypothetical protein YP_928299.1 2920245 D 326297 CDS YP_928300.1 119775560 4604675 complement(2920901..2921986) 1 NC_008700.1 KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 2921986 4604675 Sama_2426 Shewanella amazonensis SB2B putative RNA 2'-O-ribose methyltransferase YP_928300.1 2920901 R 326297 CDS YP_928301.1 119775561 4604676 complement(2922079..2922465) 1 NC_008700.1 KEGG: son:SO1535 hypothetical protein; hypothetical protein 2922465 4604676 Sama_2427 Shewanella amazonensis SB2B hypothetical protein YP_928301.1 2922079 R 326297 CDS YP_928302.1 119775562 4604677 complement(2922458..2923141) 1 NC_008700.1 KEGG: shm:Shewmr7_2794 hypothetical protein; hypothetical protein 2923141 4604677 Sama_2428 Shewanella amazonensis SB2B hypothetical protein YP_928302.1 2922458 R 326297 CDS YP_928303.1 119775563 4604678 complement(2923122..2924033) 1 NC_008700.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 2924033 4604678 Sama_2429 Shewanella amazonensis SB2B DNA-binding transcriptional activator GcvA YP_928303.1 2923122 R 326297 CDS YP_928304.1 119775564 4604679 2924249..2924512 1 NC_008700.1 hypothetical protein 2924512 4604679 Sama_2430 Shewanella amazonensis SB2B hypothetical protein YP_928304.1 2924249 D 326297 CDS YP_928305.1 119775565 4604680 complement(2924723..2926177) 1 NC_008700.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 2926177 4604680 Sama_2431 Shewanella amazonensis SB2B thiamine biosynthesis protein ThiI YP_928305.1 2924723 R 326297 CDS YP_928306.1 119775566 4604681 complement(2926416..2927354) 1 NC_008700.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 2927354 motB 4604681 motB Shewanella amazonensis SB2B flagellar motor protein MotB YP_928306.1 2926416 R 326297 CDS YP_928307.1 119775567 4604682 complement(2927359..2928126) 1 NC_008700.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 2928126 4604682 Sama_2433 Shewanella amazonensis SB2B flagellar motor protein PomA YP_928307.1 2927359 R 326297 CDS YP_928308.1 119775568 4604683 2928425..2928664 1 NC_008700.1 KEGG: sdn:Sden_2569 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 2928664 4604683 Sama_2434 Shewanella amazonensis SB2B exodeoxyribonuclease VII small subunit YP_928308.1 2928425 D 326297 CDS YP_928309.1 119775569 4604684 2928664..2929545 1 NC_008700.1 KEGG: son:SO1526 geranyltranstransferase; geranyltranstransferase 2929545 4604684 Sama_2435 Shewanella amazonensis SB2B geranyltranstransferase YP_928309.1 2928664 D 326297 CDS YP_928310.1 119775570 4604685 2929565..2931433 1 NC_008700.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2931433 4604685 Sama_2436 Shewanella amazonensis SB2B 1-deoxy-D-xylulose-5-phosphate synthase YP_928310.1 2929565 D 326297 CDS YP_928311.1 119775571 4604686 complement(2931494..2932096) 1 NC_008700.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2932096 4604686 Sama_2437 Shewanella amazonensis SB2B heat shock protein GrpE YP_928311.1 2931494 R 326297 CDS YP_928312.1 119775572 4604687 2932197..2933075 1 NC_008700.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2933075 ppnK 4604687 ppnK Shewanella amazonensis SB2B inorganic polyphosphate/ATP-NAD kinase YP_928312.1 2932197 D 326297 CDS YP_928313.1 119775573 4604688 2933648..2935291 1 NC_008700.1 KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 2935291 4604688 Sama_2439 Shewanella amazonensis SB2B L-lactate permease YP_928313.1 2933648 D 326297 CDS YP_928314.1 119775574 4604689 2935381..2938188 1 NC_008700.1 KEGG: son:SO1521 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2938188 4604689 Sama_2440 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_928314.1 2935381 D 326297 CDS YP_928315.1 119775575 4604690 2938417..2939160 1 NC_008700.1 KEGG: son:SO1520 hypothetical protein; hypothetical protein 2939160 4604690 Sama_2441 Shewanella amazonensis SB2B hypothetical protein YP_928315.1 2938417 D 326297 CDS YP_928316.1 119775576 4604691 2939174..2940574 1 NC_008700.1 KEGG: son:SO1519 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2940574 4604691 Sama_2442 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_928316.1 2939174 D 326297 CDS YP_928317.1 119775577 4604692 2940576..2941145 1 NC_008700.1 KEGG: son:SO1518 hypothetical protein; hypothetical protein 2941145 4604692 Sama_2443 Shewanella amazonensis SB2B hypothetical protein YP_928317.1 2940576 D 326297 CDS YP_928318.1 119775578 4604693 complement(2941204..2942289) 1 NC_008700.1 KEGG: son:SO4043 TonB domain protein; TonB domain-containing protein 2942289 4604693 Sama_2444 Shewanella amazonensis SB2B TonB domain-containing protein YP_928318.1 2941204 R 326297 CDS YP_928319.1 119775579 4604694 complement(2942391..2943722) 1 NC_008700.1 KEGG: shm:Shewmr7_2825 multi antimicrobial extrusion protein MatE; multi anti extrusion protein MatE 2943722 4604694 Sama_2445 Shewanella amazonensis SB2B multi anti extrusion protein MatE YP_928319.1 2942391 R 326297 CDS YP_928320.1 119775580 4604695 complement(2943939..2944979) 1 NC_008700.1 KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein/P47K family protein 2944979 4604695 Sama_2446 Shewanella amazonensis SB2B cobalamin synthesis protein/P47K family protein YP_928320.1 2943939 R 326297 CDS YP_928321.1 119775581 4604696 complement(2945111..2946454) 1 NC_008700.1 KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2946454 4604696 Sama_2447 Shewanella amazonensis SB2B DEAD/DEAH box helicase YP_928321.1 2945111 R 326297 CDS YP_928322.1 119775582 4604697 complement(2946576..2949686) 1 NC_008700.1 KEGG: son:SO1500 sensory box protein; sensory box protein 2949686 4604697 Sama_2448 Shewanella amazonensis SB2B sensory box protein YP_928322.1 2946576 R 326297 CDS YP_928323.1 119775583 4604698 complement(2949794..2951410) 1 NC_008700.1 KEGG: son:SO1499 glycogen synthase; starch synthase 2951410 4604698 Sama_2449 Shewanella amazonensis SB2B starch synthase YP_928323.1 2949794 R 326297 CDS YP_928324.1 119775584 4604699 complement(2951423..2952691) 1 NC_008700.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 2952691 glgC 4604699 glgC Shewanella amazonensis SB2B glucose-1-phosphate adenylyltransferase YP_928324.1 2951423 R 326297 CDS YP_928325.1 119775585 4604700 complement(2952717..2955191) 1 NC_008700.1 KEGG: son:SO1496 glycogen phosphorylase family protein; phosphorylase 2955191 4604700 Sama_2451 Shewanella amazonensis SB2B phosphorylase YP_928325.1 2952717 R 326297 CDS YP_928326.1 119775586 4604701 complement(2955205..2957274) 1 NC_008700.1 KEGG: son:SO1495 glycogen operon protein; hypothetical protein 2957274 4604701 Sama_2452 Shewanella amazonensis SB2B hypothetical protein YP_928326.1 2955205 R 326297 CDS YP_928327.1 119775587 4604702 complement(2957271..2959796) 1 NC_008700.1 KEGG: son:SO1494 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan-branching protein 2959796 4604702 Sama_2453 Shewanella amazonensis SB2B 1,4-alpha-glucan-branching protein YP_928327.1 2957271 R 326297 CDS YP_928328.1 119775588 4604703 complement(2959842..2962073) 1 NC_008700.1 KEGG: son:SO1493 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 2962073 4604703 Sama_2454 Shewanella amazonensis SB2B 4-alpha-glucanotransferase YP_928328.1 2959842 R 326297 CDS YP_928329.1 119775589 4604704 2962455..2963603 1 NC_008700.1 KEGG: son:SO1490 alcohol dehydrogenase II; alcohol dehydrogenase II 2963603 4604704 Sama_2455 Shewanella amazonensis SB2B alcohol dehydrogenase II YP_928329.1 2962455 D 326297 CDS YP_928330.1 119775590 4604705 2964154..2964516 1 NC_008700.1 KEGG: son:SO1489 hypothetical protein; hypothetical protein 2964516 4604705 Sama_2456 Shewanella amazonensis SB2B hypothetical protein YP_928330.1 2964154 D 326297 CDS YP_928331.1 119775591 4604706 2964863..2966347 1 NC_008700.1 KEGG: sdn:Sden_3405 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 2966347 4604706 Sama_2457 Shewanella amazonensis SB2B Na+/H+ antiporter NhaC YP_928331.1 2964863 D 326297 CDS YP_928332.1 119775592 4604707 complement(2966439..2967767) 1 NC_008700.1 KEGG: sdn:Sden_3398 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2967767 4604707 Sama_2458 Shewanella amazonensis SB2B FAD dependent oxidoreductase YP_928332.1 2966439 R 326297 CDS YP_928333.1 119775593 4604708 complement(2967768..2968352) 1 NC_008700.1 KEGG: sdn:Sden_3397 acetyltransferase, GNAT family; acetyltransferase 2968352 4604708 Sama_2459 Shewanella amazonensis SB2B acetyltransferase YP_928333.1 2967768 R 326297 CDS YP_928334.1 119775594 4604709 2968489..2968692 1 NC_008700.1 KEGG: son:SO1487 hypothetical protein; hypothetical protein 2968692 4604709 Sama_2460 Shewanella amazonensis SB2B hypothetical protein YP_928334.1 2968489 D 326297 CDS YP_928335.1 119775595 4604710 complement(2968693..2969061) 1 NC_008700.1 KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; cytosolic long-chain acyl-CoA thioester hydrolase family protein 2969061 4604710 Sama_2461 Shewanella amazonensis SB2B cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_928335.1 2968693 R 326297 CDS YP_928336.1 119775596 4604711 complement(2969212..2970222) 1 NC_008700.1 KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase 2970222 4604711 Sama_2462 Shewanella amazonensis SB2B threonine aldolase YP_928336.1 2969212 R 326297 CDS YP_928337.1 119775597 4604712 2970453..2971064 1 NC_008700.1 KEGG: son:SO3342 hypothetical protein; hypothetical protein 2971064 4604712 Sama_2463 Shewanella amazonensis SB2B hypothetical protein YP_928337.1 2970453 D 326297 CDS YP_928338.1 119775598 4604713 complement(2971103..2971678) 1 NC_008700.1 KEGG: son:SO3341 antioxidant, AhpC/TSA family; anti-oxidant AhpCTSA family protein 2971678 4604713 Sama_2464 Shewanella amazonensis SB2B anti-oxidant AhpCTSA family protein YP_928338.1 2971103 R 326297 CDS YP_928339.1 119775599 4604714 complement(2971790..2972617) 1 NC_008700.1 KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; putative small-conductance mechanosensitive channel 2972617 4604714 Sama_2465 Shewanella amazonensis SB2B putative small-conductance mechanosensitive channel YP_928339.1 2971790 R 326297 CDS YP_928340.1 119775600 4604715 complement(2972649..2973212) 1 NC_008700.1 KEGG: son:SO3339 OmpA family protein; OmpA family protein 2973212 4604715 Sama_2466 Shewanella amazonensis SB2B OmpA family protein YP_928340.1 2972649 R 326297 CDS YP_928341.1 119775601 4604716 complement(2973368..2973877) 1 NC_008700.1 KEGG: bur:Bcep18194_A5604 protein of unknown function DUF924; hypothetical protein 2973877 4604716 Sama_2467 Shewanella amazonensis SB2B hypothetical protein YP_928341.1 2973368 R 326297 CDS YP_928342.1 119775602 4606041 complement(2974744..2975304) 1 NC_008700.1 KEGG: son:SO3343 hypothetical protein; hypothetical protein 2975304 4606041 Sama_2469 Shewanella amazonensis SB2B hypothetical protein YP_928342.1 2974744 R 326297 CDS YP_928343.1 119775603 4604718 2975496..2975825 1 NC_008700.1 KEGG: she:Shewmr4_1201 hypothetical protein; hypothetical protein 2975825 4604718 Sama_2470 Shewanella amazonensis SB2B hypothetical protein YP_928343.1 2975496 D 326297 CDS YP_928344.1 119775604 4604719 2975939..2976268 1 NC_008700.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 2976268 4604719 Sama_2471 Shewanella amazonensis SB2B translation initiation factor Sui1 YP_928344.1 2975939 D 326297 CDS YP_928345.1 119775605 4604720 2976271..2976840 1 NC_008700.1 KEGG: son:SO3346 putative transcriptional regulator; putative transcriptional regulator 2976840 4604720 Sama_2472 Shewanella amazonensis SB2B putative transcriptional regulator YP_928345.1 2976271 D 326297 CDS YP_928346.1 119775606 4604721 2976840..2977259 1 NC_008700.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2977259 4604721 Sama_2473 Shewanella amazonensis SB2B Holliday junction resolvase-like protein YP_928346.1 2976840 D 326297 CDS YP_928347.1 119775607 4604722 complement(2977327..2977869) 1 NC_008700.1 KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase 2977869 4604722 Sama_2474 Shewanella amazonensis SB2B glutathione peroxidase YP_928347.1 2977327 R 326297 CDS YP_928348.1 119775608 4604723 complement(2978070..2979182) 1 NC_008700.1 KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein PilU 2979182 4604723 Sama_2475 Shewanella amazonensis SB2B twitching motility protein PilU YP_928348.1 2978070 R 326297 CDS YP_928349.1 119775609 4604724 complement(2979192..2980229) 1 NC_008700.1 KEGG: shm:Shewmr7_1265 twitching motility protein; twitching motility protein 2980229 4604724 Sama_2476 Shewanella amazonensis SB2B twitching motility protein YP_928349.1 2979192 R 326297 CDS YP_928350.1 119775610 4604725 2980265..2980972 1 NC_008700.1 KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 2980972 4604725 Sama_2477 Shewanella amazonensis SB2B hypothetical protein YP_928350.1 2980265 D 326297 CDS YP_928351.1 119775611 4604726 2981064..2981879 1 NC_008700.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2981879 4604726 Sama_2478 Shewanella amazonensis SB2B pyrroline-5-carboxylate reductase YP_928351.1 2981064 D 326297 CDS YP_928352.1 119775612 4604727 2981925..2982473 1 NC_008700.1 KEGG: sdn:Sden_2684 protein of unknown function YGGT; hypothetical protein 2982473 4604727 Sama_2479 Shewanella amazonensis SB2B hypothetical protein YP_928352.1 2981925 D 326297 CDS YP_928353.1 119775613 4604728 2982473..2982760 1 NC_008700.1 KEGG: son:SO3356 hypothetical protein; hypothetical protein 2982760 4604728 Sama_2480 Shewanella amazonensis SB2B hypothetical protein YP_928353.1 2982473 D 326297 CDS YP_928354.1 119775614 4604729 2982843..2983277 1 NC_008700.1 KEGG: son:SO3357 hypothetical protein; hypothetical protein 2983277 4604729 Sama_2481 Shewanella amazonensis SB2B hypothetical protein YP_928354.1 2982843 D 326297 CDS YP_928355.1 119775615 4604730 2983409..2984005 1 NC_008700.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 2984005 4604730 Sama_2482 Shewanella amazonensis SB2B putative deoxyribonucleotide triphosphate pyrophosphatase YP_928355.1 2983409 D 326297 CDS YP_928356.1 119775616 4604731 2984015..2985154 1 NC_008700.1 KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; oxygen-independent coproporphyrinogen III oxidase 2985154 4604731 Sama_2483 Shewanella amazonensis SB2B oxygen-independent coproporphyrinogen III oxidase YP_928356.1 2984015 D 326297 CDS YP_928357.1 119775617 4604732 2985297..2987174 1 NC_008700.1 KEGG: son:SO3361 hypothetical protein; hypothetical protein 2987174 4604732 Sama_2484 Shewanella amazonensis SB2B hypothetical protein YP_928357.1 2985297 D 326297 CDS YP_928358.1 119775618 4604733 complement(2987708..2988649) 1 NC_008700.1 KEGG: son:SO3363 transcriptional regulator, LysR family; LysR family transcriptional regulator 2988649 4604733 Sama_2485 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928358.1 2987708 R 326297 CDS YP_928359.1 119775619 4604734 complement(2988972..2989784) 1 NC_008700.1 KEGG: son:SO3364 hypothetical protein; hypothetical protein 2989784 4604734 Sama_2486 Shewanella amazonensis SB2B hypothetical protein YP_928359.1 2988972 R 326297 CDS YP_928360.1 119775620 4604735 complement(2990074..2990988) 1 NC_008700.1 catalyzes the formation of glutamate from glutamine; glutaminase 2990988 4604735 Sama_2487 Shewanella amazonensis SB2B glutaminase YP_928360.1 2990074 R 326297 CDS YP_928361.1 119775621 4604736 complement(2990992..2991318) 1 NC_008700.1 KEGG: son:SO3366 hypothetical protein; hypothetical protein 2991318 4604736 Sama_2488 Shewanella amazonensis SB2B hypothetical protein YP_928361.1 2990992 R 326297 CDS YP_928362.1 119775622 4604737 complement(2991349..2992065) 1 NC_008700.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 2992065 trmB 4604737 trmB Shewanella amazonensis SB2B tRNA (guanine-N(7)-)-methyltransferase YP_928362.1 2991349 R 326297 CDS YP_928363.1 119775623 4604738 2992315..2993421 1 NC_008700.1 KEGG: shm:Shewmr7_1251 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 2993421 4604738 Sama_2490 Shewanella amazonensis SB2B A/G-specific adenine glycosylase YP_928363.1 2992315 D 326297 CDS YP_928364.1 119775624 4604739 2993425..2993700 1 NC_008700.1 KEGG: hit:NTHI0920 hypothetical protein; hypothetical protein 2993700 4604739 Sama_2491 Shewanella amazonensis SB2B hypothetical protein YP_928364.1 2993425 D 326297 CDS YP_928365.1 119775625 4604740 complement(2994002..2994376) 1 NC_008700.1 hypothetical protein 2994376 4604740 Sama_2492 Shewanella amazonensis SB2B hypothetical protein YP_928365.1 2994002 R 326297 CDS YP_928366.1 119775626 4606042 complement(2995573..2996217) 1 NC_008700.1 KEGG: rru:Rru_A1243 cytochrome b561; cytochrome b561 2996217 4606042 Sama_2494 Shewanella amazonensis SB2B cytochrome b561 YP_928366.1 2995573 R 326297 CDS YP_928367.1 119775627 4604742 2996364..2996855 1 NC_008700.1 KEGG: cps:CPS_1945 hypothetical protein; response regulator receiver protein 2996855 4604742 Sama_2495 Shewanella amazonensis SB2B response regulator receiver protein YP_928367.1 2996364 D 326297 CDS YP_928368.1 119775628 4604743 complement(2996903..2997619) 1 NC_008700.1 KEGG: vpa:VPA0205 C factor cell-cell signaling protein; C factor cell-cell signaling protein 2997619 4604743 Sama_2496 Shewanella amazonensis SB2B C factor cell-cell signaling protein YP_928368.1 2996903 R 326297 CDS YP_928369.1 119775629 4604744 complement(2997619..2999328) 1 NC_008700.1 KEGG: vpa:VPA0204 hypothetical protein; hypothetical protein 2999328 4604744 Sama_2497 Shewanella amazonensis SB2B hypothetical protein YP_928369.1 2997619 R 326297 CDS YP_928370.1 119775630 4604745 complement(2999634..3000539) 1 NC_008700.1 KEGG: son:SO1194 protein-export membrane protein SecF; protein-export membrane protein SecF 3000539 4604745 Sama_2498 Shewanella amazonensis SB2B protein-export membrane protein SecF YP_928370.1 2999634 R 326297 CDS YP_928371.1 119775631 4604746 complement(3000542..3002377) 1 NC_008700.1 KEGG: son:SO1193 protein-export membrane protein SecD; protein-export membrane protein SecD 3002377 4604746 Sama_2499 Shewanella amazonensis SB2B protein-export membrane protein SecD YP_928371.1 3000542 R 326297 CDS YP_928372.1 119775632 4604747 complement(3002441..3002827) 1 NC_008700.1 hypothetical protein 3002827 4604747 Sama_2500 Shewanella amazonensis SB2B hypothetical protein YP_928372.1 3002441 R 326297 CDS YP_928373.1 119775633 4604748 complement(3003118..3003318) 1 NC_008700.1 hypothetical protein 3003318 4604748 Sama_2501 Shewanella amazonensis SB2B hypothetical protein YP_928373.1 3003118 R 326297 CDS YP_928374.1 119775634 4604749 complement(3003539..3005488) 1 NC_008700.1 KEGG: son:SO2323 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3005488 4604749 Sama_2502 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928374.1 3003539 R 326297 CDS YP_928375.1 119775635 4604750 complement(3005923..3009153) 1 NC_008700.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3009153 carB 4604750 carB Shewanella amazonensis SB2B carbamoyl phosphate synthase large subunit YP_928375.1 3005923 R 326297 CDS YP_928376.1 119775636 4604751 complement(3009178..3010323) 1 NC_008700.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3010323 4604751 Sama_2504 Shewanella amazonensis SB2B carbamoyl phosphate synthase small subunit YP_928376.1 3009178 R 326297 CDS YP_928377.1 119775637 4604752 complement(3010504..3011316) 1 NC_008700.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3011316 4604752 Sama_2505 Shewanella amazonensis SB2B dihydrodipicolinate reductase YP_928377.1 3010504 R 326297 CDS YP_928378.1 119775638 4604753 complement(3011370..3011987) 1 NC_008700.1 KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidyl-prolyl cis-trans isomerase FklB 3011987 4604753 Sama_2506 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase FklB YP_928378.1 3011370 R 326297 CDS YP_928379.1 119775639 4604754 complement(3012071..3012871) 1 NC_008700.1 KEGG: son:SO1137 hypothetical protein; hypothetical protein 3012871 4604754 Sama_2507 Shewanella amazonensis SB2B hypothetical protein YP_928379.1 3012071 R 326297 CDS YP_928380.1 119775640 4604755 complement(3012955..3013965) 1 NC_008700.1 KEGG: hch:HCH_00844 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; transcriptional regulator 3013965 4604755 Sama_2508 Shewanella amazonensis SB2B transcriptional regulator YP_928380.1 3012955 R 326297 CDS YP_928381.1 119775641 4604756 3014059..3014685 1 NC_008700.1 KEGG: sdn:Sden_0739 glutathione S-transferase-like protein; glutathione S-transferase-like protein 3014685 4604756 Sama_2509 Shewanella amazonensis SB2B glutathione S-transferase-like protein YP_928381.1 3014059 D 326297 CDS YP_928382.1 119775642 4604757 complement(3014764..3015894) 1 NC_008700.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3015894 4604757 Sama_2510 Shewanella amazonensis SB2B chaperone protein DnaJ YP_928382.1 3014764 R 326297 CDS YP_928383.1 119775643 4604758 complement(3015983..3017896) 1 NC_008700.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3017896 dnaK 4604758 dnaK Shewanella amazonensis SB2B molecular chaperone DnaK YP_928383.1 3015983 R 326297 CDS YP_928384.1 119775644 4604759 3018164..3019075 1 NC_008700.1 KEGG: son:SO1125 integral membrane domain protein; integral membrane domain-containing protein 3019075 4604759 Sama_2512 Shewanella amazonensis SB2B integral membrane domain-containing protein YP_928384.1 3018164 D 326297 CDS YP_928385.1 119775645 4604760 complement(3019125..3019748) 1 NC_008700.1 KEGG: ilo:IL0884 secreted protein containing internal repeats; hypothetical protein 3019748 4604760 Sama_2513 Shewanella amazonensis SB2B hypothetical protein YP_928385.1 3019125 R 326297 CDS YP_928386.1 119775646 4604761 3019990..3020412 1 NC_008700.1 KEGG: son:SO1123 hypothetical protein; hypothetical protein 3020412 4604761 Sama_2514 Shewanella amazonensis SB2B hypothetical protein YP_928386.1 3019990 D 326297 CDS YP_928387.1 119775647 4604762 complement(3020498..3021760) 1 NC_008700.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3021760 proA 4604762 proA Shewanella amazonensis SB2B gamma-glutamyl phosphate reductase YP_928387.1 3020498 R 326297 CDS YP_928388.1 119775648 4604763 complement(3021760..3022899) 1 NC_008700.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3022899 4604763 Sama_2516 Shewanella amazonensis SB2B gamma-glutamyl kinase YP_928388.1 3021760 R 326297 CDS YP_928389.1 119775649 4604764 complement(3023065..3024354) 1 NC_008700.1 KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil permease family protein 3024354 4604764 Sama_2517 Shewanella amazonensis SB2B xanthine/uracil permease family protein YP_928389.1 3023065 R 326297 CDS YP_928390.1 119775650 4604765 complement(3025211..3026806) 1 NC_008700.1 KEGG: son:SO1117 cytosol aminopeptidase, putative; cytosol aminopeptidase 3026806 4604765 Sama_2518 Shewanella amazonensis SB2B cytosol aminopeptidase YP_928390.1 3025211 R 326297 CDS YP_928391.1 119775651 4604766 3026955..3028415 1 NC_008700.1 KEGG: son:SO1115 aminoacyl-histidine dipeptidase; Xaa-His dipeptidase 3028415 4604766 Sama_2519 Shewanella amazonensis SB2B Xaa-His dipeptidase YP_928391.1 3026955 D 326297 CDS YP_928392.1 119775652 4604767 complement(3028542..3029450) 1 NC_008700.1 KEGG: pae:PA5189 probable transcriptional regulator; putative transcriptional regulator 3029450 4604767 Sama_2520 Shewanella amazonensis SB2B putative transcriptional regulator YP_928392.1 3028542 R 326297 CDS YP_928393.1 119775653 4604768 3029669..3030796 1 NC_008700.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 3030796 4604768 Sama_2521 Shewanella amazonensis SB2B agmatine deiminase YP_928393.1 3029669 D 326297 CDS YP_928394.1 119775654 4604769 3030832..3032535 1 NC_008700.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3032535 4604769 Sama_2522 Shewanella amazonensis SB2B amidase YP_928394.1 3030832 D 326297 CDS YP_928395.1 119775655 4604770 3032704..3032955 1 NC_008700.1 hypothetical protein 3032955 4604770 Sama_2523 Shewanella amazonensis SB2B hypothetical protein YP_928395.1 3032704 D 326297 CDS YP_928396.1 119775656 4604771 3032987..3034423 1 NC_008700.1 KEGG: gme:Gmet_0767 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 3034423 4604771 Sama_2524 Shewanella amazonensis SB2B hypothetical protein YP_928396.1 3032987 D 326297 CDS YP_928397.1 119775657 4604772 3034500..3034916 1 NC_008700.1 KEGG: son:SO3741.1 hypothetical protein; hypothetical protein 3034916 4604772 Sama_2525 Shewanella amazonensis SB2B hypothetical protein YP_928397.1 3034500 D 326297 CDS YP_928398.1 119775658 4604773 complement(3034996..3035997) 1 NC_008700.1 KEGG: eca:ECA3516 putative tRNA/rRNA methyltransferase; putative methyltransferase 3035997 4604773 Sama_2526 Shewanella amazonensis SB2B putative methyltransferase YP_928398.1 3034996 R 326297 CDS YP_928399.1 119775659 4604774 complement(3036239..3037306) 1 NC_008700.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3037306 4604774 Sama_2527 Shewanella amazonensis SB2B DNA polymerase IV YP_928399.1 3036239 R 326297 CDS YP_928400.1 119775660 4604775 complement(3037392..3039389) 1 NC_008700.1 KEGG: son:SO1112.1 hypothetical chemotactic transducer; putative methyl-accepting chemotaxis sensory transducer 3039389 4604775 Sama_2528 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928400.1 3037392 R 326297 CDS YP_928401.1 119775661 4604776 complement(3039585..3040055) 1 NC_008700.1 KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin subunit 1 3040055 4604776 Sama_2529 Shewanella amazonensis SB2B bacterioferritin subunit 1 YP_928401.1 3039585 R 326297 CDS YP_928402.1 119775662 4604777 complement(3040067..3040537) 1 NC_008700.1 KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin subunit 2 3040537 4604777 Sama_2530 Shewanella amazonensis SB2B bacterioferritin subunit 2 YP_928402.1 3040067 R 326297 CDS YP_928403.1 119775663 4604778 complement(3040686..3041645) 1 NC_008700.1 KEGG: xcb:XC_0641 GGDEF family protein; diguanylate cyclase 3041645 4604778 Sama_2531 Shewanella amazonensis SB2B diguanylate cyclase YP_928403.1 3040686 R 326297 CDS YP_928404.1 119775664 4604779 complement(3041783..3042007) 1 NC_008700.1 KEGG: son:SO1110 hypothetical protein; hypothetical protein 3042007 4604779 Sama_2532 Shewanella amazonensis SB2B hypothetical protein YP_928404.1 3041783 R 326297 CDS YP_928405.1 119775665 4604780 complement(3042011..3043036) 1 NC_008700.1 KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; thiamin biosynthesis lipoprotein ApbE 3043036 4604780 Sama_2533 Shewanella amazonensis SB2B thiamin biosynthesis lipoprotein ApbE YP_928405.1 3042011 R 326297 CDS YP_928406.1 119775666 4604781 complement(3043112..3044368) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3044368 4604781 Sama_2534 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit F YP_928406.1 3043112 R 326297 CDS YP_928407.1 119775667 4604782 complement(3044418..3045026) 1 NC_008700.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3045026 4604782 Sama_2535 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit E YP_928407.1 3044418 R 326297 CDS YP_928408.1 119775668 4604783 complement(3045032..3045658) 1 NC_008700.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3045658 4604783 Sama_2536 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit D YP_928408.1 3045032 R 326297 CDS YP_928409.1 119775669 4604784 complement(3045658..3046455) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3046455 4604784 Sama_2537 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit C YP_928409.1 3045658 R 326297 CDS YP_928410.1 119775670 4604785 complement(3046448..3047647) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3047647 4604785 Sama_2538 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit B YP_928410.1 3046448 R 326297 CDS YP_928411.1 119775671 4604786 complement(3047647..3048981) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3048981 4604786 Sama_2539 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit A YP_928411.1 3047647 R 326297 CDS YP_928412.1 119775672 4604787 complement(3049367..3051172) 1 NC_008700.1 KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; hypothetical protein 3051172 4604787 Sama_2540 Shewanella amazonensis SB2B hypothetical protein YP_928412.1 3049367 R 326297 CDS YP_928413.1 119775673 4604788 complement(3051290..3051799) 1 NC_008700.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3051799 4604788 Sama_2541 Shewanella amazonensis SB2B S-ribosylhomocysteinase YP_928413.1 3051290 R 326297 CDS YP_928414.1 119775674 4604789 complement(3051884..3052975) 1 NC_008700.1 KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 3052975 4604789 Sama_2542 Shewanella amazonensis SB2B TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component YP_928414.1 3051884 R 326297 CDS YP_928415.1 119775675 4604790 complement(3053009..3054370) 1 NC_008700.1 KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter; C4 dicarboxylate ABC transporter permease 3054370 4604790 Sama_2543 Shewanella amazonensis SB2B C4 dicarboxylate ABC transporter permease YP_928415.1 3053009 R 326297 CDS YP_928416.1 119775676 4604791 complement(3054370..3054876) 1 NC_008700.1 KEGG: abo:ABO_2686 TRAP-type transport system, small permease component; TRAP-type transport system, small permease 3054876 4604791 Sama_2544 Shewanella amazonensis SB2B TRAP-type transport system, small permease YP_928416.1 3054370 R 326297 CDS YP_928417.1 119775677 4604792 complement(3055027..3055326) 1 NC_008700.1 KEGG: ppr:PBPRA0820 putative cell division protein BolA; putative cell division protein BolA 3055326 4604792 Sama_2545 Shewanella amazonensis SB2B putative cell division protein BolA YP_928417.1 3055027 R 326297 CDS YP_928418.1 119775678 4604793 complement(3055382..3055909) 1 NC_008700.1 KEGG: ppr:PBPRB1268 hypothetical protein; hypothetical protein 3055909 4604793 Sama_2546 Shewanella amazonensis SB2B hypothetical protein YP_928418.1 3055382 R 326297 CDS YP_928419.1 119775679 4604794 complement(3056010..3056630) 1 NC_008700.1 KEGG: sdn:Sden_0979 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3056630 4604794 Sama_2547 Shewanella amazonensis SB2B 2OG-Fe(II) oxygenase YP_928419.1 3056010 R 326297 CDS YP_928420.1 119775680 4604795 3056722..3057873 1 NC_008700.1 KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 3057873 4604795 Sama_2548 Shewanella amazonensis SB2B rRNA (guanine-N(2)-)-methyltransferase YP_928420.1 3056722 D 326297 CDS YP_928421.1 119775681 4604796 complement(3057983..3058663) 1 NC_008700.1 cofactor involved in the reduction of disulfides; glutaredoxin 3058663 4604796 Sama_2549 Shewanella amazonensis SB2B glutaredoxin YP_928421.1 3057983 R 326297 CDS YP_928422.1 119775682 4604797 complement(3058695..3059558) 1 NC_008700.1 KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein 3059558 4604797 Sama_2550 Shewanella amazonensis SB2B sterol desaturase family protein YP_928422.1 3058695 R 326297 CDS YP_928423.1 119775683 4604798 complement(3059646..3060629) 1 NC_008700.1 KEGG: son:SO3808 hypothetical protein; hypothetical protein 3060629 4604798 Sama_2551 Shewanella amazonensis SB2B hypothetical protein YP_928423.1 3059646 R 326297 CDS YP_928424.1 119775684 4604799 complement(3060871..3061431) 1 NC_008700.1 KEGG: son:SO3810 OmpA-like transmembrane domain protein; OmpA-like transmembrane domain-containing protein 3061431 4604799 Sama_2552 Shewanella amazonensis SB2B OmpA-like transmembrane domain-containing protein YP_928424.1 3060871 R 326297 CDS YP_928425.1 119775685 4604800 3061520..3062134 1 NC_008700.1 KEGG: son:SO3811 lipoprotein, putative; putative lipoprotein 3062134 4604800 Sama_2553 Shewanella amazonensis SB2B putative lipoprotein YP_928425.1 3061520 D 326297 CDS YP_928426.1 119775686 4604801 3062156..3062743 1 NC_008700.1 KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase A 3062743 4604801 Sama_2554 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase A YP_928426.1 3062156 D 326297 CDS YP_928427.1 119775687 4604802 3062809..3063135 1 NC_008700.1 KEGG: son:SO3813 hypothetical protein; hypothetical protein 3063135 4604802 Sama_2555 Shewanella amazonensis SB2B hypothetical protein YP_928427.1 3062809 D 326297 CDS YP_928428.1 119775688 4604803 3063265..3064665 1 NC_008700.1 KEGG: son:SO3814 AmpG protein, putative; AmpG protein 3064665 4604803 Sama_2556 Shewanella amazonensis SB2B AmpG protein YP_928428.1 3063265 D 326297 CDS YP_928429.1 119775689 4604804 complement(3064679..3065164) 1 NC_008700.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3065164 4604804 Sama_2557 Shewanella amazonensis SB2B putative nucleotide-binding protein YP_928429.1 3064679 R 326297 CDS YP_928430.1 119775690 4604805 3065363..3065725 1 NC_008700.1 KEGG: sdn:Sden_0769 hypothetical protein; hypothetical protein 3065725 4604805 Sama_2558 Shewanella amazonensis SB2B hypothetical protein YP_928430.1 3065363 D 326297 CDS YP_928431.1 119775691 4604806 3065722..3066624 1 NC_008700.1 KEGG: son:SO3817 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 3066624 4604806 Sama_2559 Shewanella amazonensis SB2B 2-dehydropantoate 2-reductase YP_928431.1 3065722 D 326297 CDS YP_928432.1 119775692 4604807 complement(3066638..3067513) 1 NC_008700.1 KEGG: son:SO3822 hypothetical protein; hypothetical protein 3067513 4604807 Sama_2560 Shewanella amazonensis SB2B hypothetical protein YP_928432.1 3066638 R 326297 CDS YP_928433.1 119775693 4604808 complement(3067601..3068449) 1 NC_008700.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3068449 4604808 Sama_2561 Shewanella amazonensis SB2B 2-dehydro-3-deoxyphosphooctonate aldolase YP_928433.1 3067601 R 326297 CDS YP_928434.1 119775694 4604809 complement(3068495..3069733) 1 NC_008700.1 KEGG: sdn:Sden_0924 protein of unknown function DUF819; hypothetical protein 3069733 4604809 Sama_2562 Shewanella amazonensis SB2B hypothetical protein YP_928434.1 3068495 R 326297 CDS YP_928435.1 119775695 4604810 complement(3069782..3070570) 1 NC_008700.1 KEGG: son:SO3829 hypothetical protein; hypothetical protein 3070570 4604810 Sama_2563 Shewanella amazonensis SB2B hypothetical protein YP_928435.1 3069782 R 326297 CDS YP_928436.1 119775696 4604811 complement(3070567..3070965) 1 NC_008700.1 KEGG: son:SO3830 hypothetical protein; hypothetical protein 3070965 4604811 Sama_2564 Shewanella amazonensis SB2B hypothetical protein YP_928436.1 3070567 R 326297 CDS YP_928437.1 119775697 4604812 complement(3071087..3071944) 1 NC_008700.1 KEGG: son:SO3832 hemK family protein; hemK family protein 3071944 4604812 Sama_2565 Shewanella amazonensis SB2B hemK family protein YP_928437.1 3071087 R 326297 CDS YP_928438.1 119775698 4604813 complement(3071948..3073039) 1 NC_008700.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3073039 prfA 4604813 prfA Shewanella amazonensis SB2B peptide chain release factor 1 YP_928438.1 3071948 R 326297 CDS YP_928439.1 119775699 4604814 complement(3073056..3074306) 1 NC_008700.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3074306 hemA 4604814 hemA Shewanella amazonensis SB2B glutamyl-tRNA reductase YP_928439.1 3073056 R 326297 CDS YP_928440.1 119775700 4604815 3074536..3075159 1 NC_008700.1 KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3075159 4604815 Sama_2568 Shewanella amazonensis SB2B outer membrane lipoprotein LolB YP_928440.1 3074536 D 326297 CDS YP_928441.1 119775701 4604816 3075156..3076007 1 NC_008700.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3076007 ipk 4604816 ipk Shewanella amazonensis SB2B 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_928441.1 3075156 D 326297 CDS YP_928442.1 119775702 4604817 3076087..3077034 1 NC_008700.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3077034 4604817 Sama_2570 Shewanella amazonensis SB2B ribose-phosphate pyrophosphokinase YP_928442.1 3076087 D 326297 CDS YP_928443.1 119775703 4606007 complement(3078197..3079288) 1 NC_008700.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3079288 4606007 Sama_2571 Shewanella amazonensis SB2B GTP-dependent nucleic acid-binding protein EngD YP_928443.1 3078197 R 326297 CDS YP_928444.1 119775704 4604819 complement(3079326..3079913) 1 NC_008700.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3079913 4604819 Sama_2572 Shewanella amazonensis SB2B peptidyl-tRNA hydrolase YP_928444.1 3079326 R 326297 CDS YP_928445.1 119775705 4604820 complement(3080124..3081392) 1 NC_008700.1 KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3081392 4604820 Sama_2573 Shewanella amazonensis SB2B 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_928445.1 3080124 R 326297 CDS YP_928446.1 119775706 4604821 3081502..3081801 1 NC_008700.1 KEGG: son:SO1182 hypothetical protein; hypothetical protein 3081801 4604821 Sama_2574 Shewanella amazonensis SB2B hypothetical protein YP_928446.1 3081502 D 326297 CDS YP_928447.1 119775707 4604822 3081949..3083400 1 NC_008700.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3083400 4604822 Sama_2575 Shewanella amazonensis SB2B (dimethylallyl)adenosine tRNA methylthiotransferase YP_928447.1 3081949 D 326297 CDS YP_928448.1 119775708 4604823 3083549..3084619 1 NC_008700.1 KEGG: son:SO1180 PhoH family protein; PhoH family protein 3084619 4604823 Sama_2576 Shewanella amazonensis SB2B PhoH family protein YP_928448.1 3083549 D 326297 CDS YP_928449.1 119775709 4604824 3084609..3085070 1 NC_008700.1 KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3085070 4604824 Sama_2577 Shewanella amazonensis SB2B putative metalloprotease YP_928449.1 3084609 D 326297 CDS YP_928450.1 119775710 4604825 3085101..3085979 1 NC_008700.1 KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; magnesium and cobalt efflux protein CorC 3085979 4604825 Sama_2578 Shewanella amazonensis SB2B magnesium and cobalt efflux protein CorC YP_928450.1 3085101 D 326297 CDS YP_928451.1 119775711 4604826 3086040..3087575 1 NC_008700.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3087575 lnt 4604826 lnt Shewanella amazonensis SB2B apolipoprotein N-acyltransferase YP_928451.1 3086040 D 326297 CDS YP_928452.1 119775712 4604827 3087745..3088986 1 NC_008700.1 KEGG: pha:PSHAa0134 hypothetical protein; putative diguanylate phosphodiesterase 3088986 4604827 Sama_2580 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_928452.1 3087745 D 326297 CDS YP_928453.1 119775713 4604828 complement(3089001..3089501) 1 NC_008700.1 KEGG: sdn:Sden_0798 protein of unknown function DUF1451; hypothetical protein 3089501 4604828 Sama_2581 Shewanella amazonensis SB2B hypothetical protein YP_928453.1 3089001 R 326297 CDS YP_928454.1 119775714 4604829 3089606..3092200 1 NC_008700.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3092200 leuS 4604829 leuS Shewanella amazonensis SB2B leucyl-tRNA synthetase YP_928454.1 3089606 D 326297 CDS YP_928455.1 119775715 4604830 3092296..3092790 1 NC_008700.1 KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B 3092790 4604830 Sama_2583 Shewanella amazonensis SB2B rare lipoprotein B YP_928455.1 3092296 D 326297 CDS YP_928456.1 119775716 4604831 3092790..3093818 1 NC_008700.1 KEGG: son:SO1172 DNA polymerase III delta subunit; DNA-directed DNA polymerase 3093818 4604831 Sama_2584 Shewanella amazonensis SB2B DNA-directed DNA polymerase YP_928456.1 3092790 D 326297 CDS YP_928457.1 119775717 4604832 3093820..3094470 1 NC_008700.1 KEGG: sdn:Sden_0794 nicotinate-nucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase 3094470 4604832 Sama_2585 Shewanella amazonensis SB2B nicotinate-nucleotide adenylyltransferase YP_928457.1 3093820 D 326297 CDS YP_928458.1 119775718 4604833 3094543..3094869 1 NC_008700.1 KEGG: son:SO1170 iojap domain protein; iojap domain-containing protein 3094869 4604833 Sama_2586 Shewanella amazonensis SB2B iojap domain-containing protein YP_928458.1 3094543 D 326297 CDS YP_928459.1 119775719 4604834 3094869..3095339 1 NC_008700.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3095339 4604834 Sama_2587 Shewanella amazonensis SB2B rRNA large subunit methyltransferase YP_928459.1 3094869 D 326297 CDS YP_928460.1 119775720 4604835 3095404..3097236 1 NC_008700.1 KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase 3097236 4604835 Sama_2588 Shewanella amazonensis SB2B peptidoglycan glycosyltransferase YP_928460.1 3095404 D 326297 CDS YP_928461.1 119775721 4604836 3097233..3098339 1 NC_008700.1 KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA 3098339 4604836 Sama_2589 Shewanella amazonensis SB2B rod shape-determining protein RodA YP_928461.1 3097233 D 326297 CDS YP_928462.1 119775722 4604837 3098349..3099338 1 NC_008700.1 KEGG: sdn:Sden_0853 lytic murein transglycosylase B; lytic murein transglycosylase B 3099338 4604837 Sama_2590 Shewanella amazonensis SB2B lytic murein transglycosylase B YP_928462.1 3098349 D 326297 CDS YP_928463.1 119775723 4604838 3099319..3100155 1 NC_008700.1 KEGG: sdn:Sden_0852 rare lipoprotein A; rare lipoprotein A 3100155 4604838 Sama_2591 Shewanella amazonensis SB2B rare lipoprotein A YP_928463.1 3099319 D 326297 CDS YP_928464.1 119775724 4604839 3100253..3101431 1 NC_008700.1 KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3101431 4604839 Sama_2592 Shewanella amazonensis SB2B serine-type D-Ala-D-Ala carboxypeptidase YP_928464.1 3100253 D 326297 CDS YP_928465.1 119775725 4604840 3101547..3101813 1 NC_008700.1 KEGG: son:SO1163 hypothetical protein; hypothetical protein 3101813 4604840 Sama_2593 Shewanella amazonensis SB2B hypothetical protein YP_928465.1 3101547 D 326297 CDS YP_928466.1 119775726 4604841 3101908..3102558 1 NC_008700.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3102558 lipB 4604841 lipB Shewanella amazonensis SB2B lipoate-protein ligase B YP_928466.1 3101908 D 326297 CDS YP_928467.1 119775727 4604842 3102560..3103525 1 NC_008700.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3103525 4604842 Sama_2595 Shewanella amazonensis SB2B lipoyl synthase YP_928467.1 3102560 D 326297 CDS YP_928468.1 119775728 4604843 complement(3103594..3104043) 1 NC_008700.1 KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 3104043 4604843 Sama_2596 Shewanella amazonensis SB2B ribosomal-protein-alanine acetyltransferase YP_928468.1 3103594 R 326297 CDS YP_928469.1 119775729 4604844 complement(3104043..3104312) 1 NC_008700.1 hypothetical protein 3104312 4604844 Sama_2597 Shewanella amazonensis SB2B hypothetical protein YP_928469.1 3104043 R 326297 CDS YP_928470.1 119775730 4604845 3104418..3104891 1 NC_008700.1 KEGG: son:SO1158 Dps family protein; Dps family protein 3104891 4604845 Sama_2598 Shewanella amazonensis SB2B Dps family protein YP_928470.1 3104418 D 326297 CDS YP_928471.1 119775731 4606008 complement(3105253..3106254) 1 NC_008700.1 KEGG: pha:PSHAb0175 conserved protein of unknown function ; putative lipoprotein; hypothetical protein 3106254 4606008 Sama_2599 Shewanella amazonensis SB2B hypothetical protein YP_928471.1 3105253 R 326297 CDS YP_928472.1 119775732 4606013 complement(3112729..3113580) 1 NC_008700.1 KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; CDP-diacylglycerol--serine O-phosphatidyltransferase 3113580 4606013 Sama_2600 Shewanella amazonensis SB2B CDP-diacylglycerol--serine O-phosphatidyltransferase YP_928472.1 3112729 R 326297 CDS YP_928473.1 119775733 4604848 3113665..3114120 1 NC_008700.1 KEGG: son:SO3576 hypothetical protein; hypothetical protein 3114120 4604848 Sama_2601 Shewanella amazonensis SB2B hypothetical protein YP_928473.1 3113665 D 326297 CDS YP_928474.1 119775734 4604849 complement(3114224..3114670) 1 NC_008700.1 KEGG: she:Shewmr4_2466 transposase IS200-family protein; transposase IS200-family protein 3114670 4604849 Sama_2602 Shewanella amazonensis SB2B transposase IS200-family protein YP_928474.1 3114224 R 326297 CDS YP_928475.1 119775735 4604850 complement(3114894..3117467) 1 NC_008700.1 KEGG: son:SO3577 clpB protein; clpB protein 3117467 4604850 Sama_2603 Shewanella amazonensis SB2B clpB protein YP_928475.1 3114894 R 326297 CDS YP_928476.1 119775736 4604851 complement(3117616..3118380) 1 NC_008700.1 KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 3118380 4604851 Sama_2604 Shewanella amazonensis SB2B hypothetical protein YP_928476.1 3117616 R 326297 CDS YP_928477.1 119775737 4604852 complement(3118400..3119374) 1 NC_008700.1 KEGG: sdn:Sden_2863 pseudouridine synthase, RluD; pseudouridylate synthase 3119374 4604852 Sama_2605 Shewanella amazonensis SB2B pseudouridylate synthase YP_928477.1 3118400 R 326297 CDS YP_928478.1 119775738 4604853 3119410..3120261 1 NC_008700.1 KEGG: son:SO3580 putative lipoprotein; putative lipoprotein 3120261 4604853 Sama_2606 Shewanella amazonensis SB2B putative lipoprotein YP_928478.1 3119410 D 326297 CDS YP_928479.1 119775739 4606017 3121171..3122796 1 NC_008700.1 KEGG: sdn:Sden_0712 chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer 3122796 4606017 Sama_2607 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928479.1 3121171 D 326297 CDS YP_928480.1 119775740 4604855 complement(3122925..3124499) 1 NC_008700.1 KEGG: sdn:Sden_1662 GGDEF domain protein; diguanylate cyclase 3124499 4604855 Sama_2608 Shewanella amazonensis SB2B diguanylate cyclase YP_928480.1 3122925 R 326297 CDS YP_928481.1 119775741 4604856 complement(3124600..3126465) 1 NC_008700.1 KEGG: son:SO3838 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3126465 4604856 Sama_2609 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928481.1 3124600 R 326297 CDS YP_928482.1 119775742 4604857 3126737..3127690 1 NC_008700.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3127690 4604857 Sama_2610 Shewanella amazonensis SB2B ornithine cyclodeaminase YP_928482.1 3126737 D 326297 CDS YP_928483.1 119775743 4604858 3127773..3128327 1 NC_008700.1 KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3128327 4604858 Sama_2611 Shewanella amazonensis SB2B ECF subfamily RNA polymerase sigma-24 factor YP_928483.1 3127773 D 326297 CDS YP_928484.1 119775744 4604859 3128324..3128863 1 NC_008700.1 KEGG: son:SO3841 hypothetical protein; hypothetical protein 3128863 4604859 Sama_2612 Shewanella amazonensis SB2B hypothetical protein YP_928484.1 3128324 D 326297 CDS YP_928485.1 119775745 4604860 3128860..3129789 1 NC_008700.1 KEGG: son:SO3842 hypothetical protein; hypothetical protein 3129789 4604860 Sama_2613 Shewanella amazonensis SB2B hypothetical protein YP_928485.1 3128860 D 326297 CDS YP_928486.1 119775746 4604861 complement(3129843..3130535) 1 NC_008700.1 KEGG: sdn:Sden_1090 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 3130535 4604861 Sama_2614 Shewanella amazonensis SB2B pseudouridine synthase, Rsu YP_928486.1 3129843 R 326297 CDS YP_928487.1 119775747 4604862 3130764..3132851 1 NC_008700.1 KEGG: son:SO3844 peptidase, M13 family; endothelin-converting protein 1 3132851 4604862 Sama_2615 Shewanella amazonensis SB2B endothelin-converting protein 1 YP_928487.1 3130764 D 326297 CDS YP_928488.1 119775748 4604863 3132978..3133379 1 NC_008700.1 KEGG: son:SO3847 hypothetical protein; hypothetical protein 3133379 4604863 Sama_2616 Shewanella amazonensis SB2B hypothetical protein YP_928488.1 3132978 D 326297 CDS YP_928489.1 119775749 4604864 3133394..3133897 1 NC_008700.1 KEGG: son:SO3848 hypothetical protein; hypothetical protein 3133897 4604864 Sama_2617 Shewanella amazonensis SB2B hypothetical protein YP_928489.1 3133394 D 326297 CDS YP_928490.1 119775750 4604865 complement(3134018..3136567) 1 NC_008700.1 KEGG: sdn:Sden_0738 TonB-dependent receptor; TonB-dependent receptor 3136567 4604865 Sama_2618 Shewanella amazonensis SB2B TonB-dependent receptor YP_928490.1 3134018 R 326297 CDS YP_928491.1 119775751 4604866 3136754..3137803 1 NC_008700.1 KEGG: son:SO0914 hypothetical protein; hypothetical protein 3137803 4604866 Sama_2619 Shewanella amazonensis SB2B hypothetical protein YP_928491.1 3136754 D 326297 CDS YP_928492.1 119775752 4604867 3137841..3138308 1 NC_008700.1 KEGG: sdn:Sden_0737 protein of unknown function DUF1456; hypothetical protein 3138308 4604867 Sama_2620 Shewanella amazonensis SB2B hypothetical protein YP_928492.1 3137841 D 326297 CDS YP_928493.1 119775753 4604868 3138612..3140300 1 NC_008700.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3140300 4604868 Sama_2621 Shewanella amazonensis SB2B malate dehydrogenase YP_928493.1 3138612 D 326297 CDS YP_928494.1 119775754 4604869 complement(3140366..3140800) 1 NC_008700.1 KEGG: son:SO3856 hypothetical protein; hypothetical protein 3140800 4604869 Sama_2622 Shewanella amazonensis SB2B hypothetical protein YP_928494.1 3140366 R 326297 CDS YP_928495.1 119775755 4604870 3141040..3142920 1 NC_008700.1 KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; cyclic nucleotide phosphodiesterase 3142920 4604870 Sama_2623 Shewanella amazonensis SB2B cyclic nucleotide phosphodiesterase YP_928495.1 3141040 D 326297 CDS YP_928496.1 119775756 4604871 complement(3142917..3143732) 1 NC_008700.1 KEGG: son:SO3860 hypothetical protein; hypothetical protein 3143732 4604871 Sama_2624 Shewanella amazonensis SB2B hypothetical protein YP_928496.1 3142917 R 326297 CDS YP_928497.1 119775757 4604872 3143865..3145022 1 NC_008700.1 KEGG: son:SO3861 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 3145022 4604872 Sama_2625 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_928497.1 3143865 D 326297 CDS YP_928498.1 119775758 4604873 complement(3145019..3145228) 1 NC_008700.1 KEGG: bcn:Bcen_6124 protein of unknown function DUF1458; hypothetical protein 3145228 4604873 Sama_2626 Shewanella amazonensis SB2B hypothetical protein YP_928498.1 3145019 R 326297 CDS YP_928499.1 119775759 4604874 complement(3145316..3147586) 1 NC_008700.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3147586 4604874 Sama_2627 Shewanella amazonensis SB2B 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_928499.1 3145316 R 326297 CDS YP_928500.1 119775760 4604875 3147751..3148650 1 NC_008700.1 KEGG: son:SO0817 transcriptional activator protein MetR; transcriptional activator protein MetR 3148650 4604875 Sama_2628 Shewanella amazonensis SB2B transcriptional activator protein MetR YP_928500.1 3147751 D 326297 CDS YP_928501.1 119775761 4604876 complement(3148738..3149466) 1 NC_008700.1 KEGG: son:SO0816 hypothetical protein; putative signal transduction protein 3149466 4604876 Sama_2629 Shewanella amazonensis SB2B putative signal transduction protein YP_928501.1 3148738 R 326297 CDS YP_928502.1 119775762 4604877 complement(3149625..3150221) 1 NC_008700.1 KEGG: noc:Noc_1154 lipolytic enzyme, G-D-S-L; lipolytic protein G-D-S-L 3150221 4604877 Sama_2630 Shewanella amazonensis SB2B lipolytic protein G-D-S-L YP_928502.1 3149625 R 326297 CDS YP_928503.1 119775763 4604878 complement(3150304..3152244) 1 NC_008700.1 KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor domain-containing protein 3152244 4604878 Sama_2631 Shewanella amazonensis SB2B TonB-dependent receptor domain-containing protein YP_928503.1 3150304 R 326297 CDS YP_928504.1 119775764 4604879 complement(3152549..3153175) 1 NC_008700.1 KEGG: sdn:Sden_0728 hypothetical protein; hypothetical protein 3153175 4604879 Sama_2632 Shewanella amazonensis SB2B hypothetical protein YP_928504.1 3152549 R 326297 CDS YP_928505.1 119775765 4604880 complement(3153223..3153567) 1 NC_008700.1 KEGG: cps:CPS_3606 hypothetical protein; hypothetical protein 3153567 4604880 Sama_2633 Shewanella amazonensis SB2B hypothetical protein YP_928505.1 3153223 R 326297 CDS YP_928506.1 119775766 4604881 3153775..3155625 1 NC_008700.1 KEGG: ppr:PBPRB0302 conserved hypothetical protein; hypothetical protein 3155625 4604881 Sama_2634 Shewanella amazonensis SB2B hypothetical protein YP_928506.1 3153775 D 326297 CDS YP_928507.1 119775767 4604882 complement(3155682..3157802) 1 NC_008700.1 KEGG: son:SO1278 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3157802 4604882 Sama_2635 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928507.1 3155682 R 326297 CDS YP_928508.1 119775768 4604883 complement(3157929..3159206) 1 NC_008700.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 3159206 4604883 Sama_2636 Shewanella amazonensis SB2B 4-aminobutyrate aminotransferase YP_928508.1 3157929 R 326297 CDS YP_928509.1 119775769 4604884 complement(3159228..3160670) 1 NC_008700.1 KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); succinate-semialdehyde dehydrogenase (NAD(P)(+)) 3160670 4604884 Sama_2637 Shewanella amazonensis SB2B succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_928509.1 3159228 R 326297 CDS YP_928510.1 119775770 4604885 complement(3160726..3162012) 1 NC_008700.1 KEGG: son:SO1274 probable oxidoreductase; putative oxidoreductase 3162012 4604885 Sama_2638 Shewanella amazonensis SB2B putative oxidoreductase YP_928510.1 3160726 R 326297 CDS YP_928511.1 119775771 4604886 complement(3162181..3162996) 1 NC_008700.1 KEGG: sdn:Sden_3028 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3162996 4604886 Sama_2639 Shewanella amazonensis SB2B binding-protein-dependent transport system inner membrane protein YP_928511.1 3162181 R 326297 CDS YP_928512.1 119775772 4604887 complement(3162993..3163904) 1 NC_008700.1 KEGG: sdn:Sden_3029 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3163904 4604887 Sama_2640 Shewanella amazonensis SB2B binding-protein-dependent transport system inner membrane protein YP_928512.1 3162993 R 326297 CDS YP_928513.1 119775773 4604888 complement(3163901..3165037) 1 NC_008700.1 KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; polyamine ABC transporter ATP-binding protein 3165037 4604888 Sama_2641 Shewanella amazonensis SB2B polyamine ABC transporter ATP-binding protein YP_928513.1 3163901 R 326297 CDS YP_928514.1 119775774 4604889 complement(3165155..3166255) 1 NC_008700.1 KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; polyamine ABC transporter periplasmic polyamine-binding protein 3166255 4604889 Sama_2642 Shewanella amazonensis SB2B polyamine ABC transporter periplasmic polyamine-binding protein YP_928514.1 3165155 R 326297 CDS YP_928515.1 119775775 4604890 complement(3166428..3167810) 1 NC_008700.1 KEGG: cps:CPS_4663 aminotransferase, class III; putative aminotransferase 3167810 4604890 Sama_2643 Shewanella amazonensis SB2B putative aminotransferase YP_928515.1 3166428 R 326297 CDS YP_928516.1 119775776 4604891 complement(3167857..3169212) 1 NC_008700.1 KEGG: sdn:Sden_3032 glutamate--ammonia ligase; glutamate--ammonia ligase 3169212 4604891 Sama_2644 Shewanella amazonensis SB2B glutamate--ammonia ligase YP_928516.1 3167857 R 326297 CDS YP_928517.1 119775777 4604892 complement(3169216..3169980) 1 NC_008700.1 KEGG: son:SO1267 hypothetical glutamine amidotransferase; glutamine amidotransferase 3169980 4604892 Sama_2645 Shewanella amazonensis SB2B glutamine amidotransferase YP_928517.1 3169216 R 326297 CDS YP_928518.1 119775778 4604893 complement(3170420..3170968) 1 NC_008700.1 KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator 3170968 4604893 Sama_2646 Shewanella amazonensis SB2B XRE family transcriptional regulator YP_928518.1 3170420 R 326297 CDS YP_928519.1 119775779 4604894 3171264..3172571 1 NC_008700.1 KEGG: son:SO1264 hypothetical oxidoreductase; oxidoreductase 3172571 4604894 Sama_2647 Shewanella amazonensis SB2B oxidoreductase YP_928519.1 3171264 D 326297 CDS YP_928520.1 119775780 4604895 complement(3172632..3174128) 1 NC_008700.1 KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase 3174128 4604895 Sama_2648 Shewanella amazonensis SB2B aldehyde dehydrogenase YP_928520.1 3172632 R 326297 CDS YP_928521.1 119775781 4604896 3174516..3175856 1 NC_008700.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3175856 4604896 Sama_2649 Shewanella amazonensis SB2B beta alanine--pyruvate transaminase YP_928521.1 3174516 D 326297 CDS YP_928522.1 119775782 4604897 3175898..3177388 1 NC_008700.1 KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3177388 4604897 Sama_2650 Shewanella amazonensis SB2B methylmalonate-semialdehyde dehydrogenase YP_928522.1 3175898 D 326297 CDS YP_928523.1 119775783 4604898 3177428..3177793 1 NC_008700.1 KEGG: son:SO3501 hypothetical protein; hypothetical protein 3177793 4604898 Sama_2651 Shewanella amazonensis SB2B hypothetical protein YP_928523.1 3177428 D 326297 CDS YP_928524.1 119775784 4604899 3177902..3178630 1 NC_008700.1 KEGG: son:SO3502 hypothetical protein; hypothetical protein 3178630 4604899 Sama_2652 Shewanella amazonensis SB2B hypothetical protein YP_928524.1 3177902 D 326297 CDS YP_928525.1 119775785 4604900 complement(3178688..3178870) 1 NC_008700.1 KEGG: shm:Shewmr7_1247 hypothetical protein; hypothetical protein 3178870 4604900 Sama_2653 Shewanella amazonensis SB2B hypothetical protein YP_928525.1 3178688 R 326297 CDS YP_928526.1 119775786 4604901 3179015..3179359 1 NC_008700.1 KEGG: son:SO3374 hypothetical protein; hypothetical protein 3179359 4604901 Sama_2654 Shewanella amazonensis SB2B hypothetical protein YP_928526.1 3179015 D 326297 CDS YP_928527.1 119775787 4604902 3179729..3180625 1 NC_008700.1 KEGG: tbd:Tbd_0710 hypothetical protein; hypothetical protein 3180625 4604902 Sama_2655 Shewanella amazonensis SB2B hypothetical protein YP_928527.1 3179729 D 326297 CDS YP_928528.1 119775788 4604903 3180670..3181221 1 NC_008700.1 KEGG: tbd:Tbd_0709 putative signal peptide protein; putative signal peptide protein 3181221 4604903 Sama_2656 Shewanella amazonensis SB2B putative signal peptide protein YP_928528.1 3180670 D 326297 CDS YP_928529.1 119775789 4604904 3181222..3182043 1 NC_008700.1 KEGG: son:SO1090 ApbE family protein, putative; ApbE family protein 3182043 4604904 Sama_2657 Shewanella amazonensis SB2B ApbE family protein YP_928529.1 3181222 D 326297 CDS YP_928530.1 119775790 4604905 3182069..3182581 1 NC_008700.1 KEGG: tcx:Tcr_0415 hypothetical protein; hypothetical protein 3182581 4604905 Sama_2658 Shewanella amazonensis SB2B hypothetical protein YP_928530.1 3182069 D 326297 CDS YP_928531.1 119775791 4604906 complement(3182901..3183461) 1 NC_008700.1 KEGG: cps:CPS_2089 hypothetical protein; hypothetical protein 3183461 4604906 Sama_2659 Shewanella amazonensis SB2B hypothetical protein YP_928531.1 3182901 R 326297 CDS YP_928532.1 119775792 4604907 3183605..3184726 1 NC_008700.1 KEGG: sdn:Sden_2522 AFG1-like ATPase; AFG1-like ATPase 3184726 4604907 Sama_2660 Shewanella amazonensis SB2B AFG1-like ATPase YP_928532.1 3183605 D 326297 CDS YP_928533.1 119775793 4604908 complement(3184723..3186177) 1 NC_008700.1 KEGG: pha:PSHAa2185 amidohydrolase; amidohydrolase 3186177 4604908 Sama_2661 Shewanella amazonensis SB2B amidohydrolase YP_928533.1 3184723 R 326297 CDS YP_928534.1 119775794 4604909 3186293..3187216 1 NC_008700.1 KEGG: bbr:BB1160 putative LysR-family transcriptional regulator; LysR family transcriptional regulator 3187216 4604909 Sama_2662 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928534.1 3186293 D 326297 CDS YP_928535.1 119775795 4604910 complement(3187156..3190041) 1 NC_008700.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3190041 4604910 Sama_2663 Shewanella amazonensis SB2B bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_928535.1 3187156 R 326297 CDS YP_928536.1 119775796 4604911 3190258..3191235 1 NC_008700.1 KEGG: son:SO3761 hypothetical protein; hypothetical protein 3191235 4604911 Sama_2664 Shewanella amazonensis SB2B hypothetical protein YP_928536.1 3190258 D 326297 CDS YP_928537.1 119775797 4604912 3191256..3192158 1 NC_008700.1 KEGG: son:SO3762 hypothetical protein; hypothetical protein 3192158 4604912 Sama_2665 Shewanella amazonensis SB2B hypothetical protein YP_928537.1 3191256 D 326297 CDS YP_928538.1 119775798 4604913 3192162..3193877 1 NC_008700.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3193877 4604913 Sama_2666 Shewanella amazonensis SB2B spermidine synthase YP_928538.1 3192162 D 326297 CDS YP_928539.1 119775799 4604914 3194014..3194427 1 NC_008700.1 KEGG: son:SO3764 hypothetical protein; hypothetical protein 3194427 4604914 Sama_2667 Shewanella amazonensis SB2B hypothetical protein YP_928539.1 3194014 D 326297 CDS YP_928540.1 119775800 4604915 3194439..3195128 1 NC_008700.1 KEGG: sdn:Sden_0697 PspA/IM30; PspA/IM30 protein 3195128 4604915 Sama_2668 Shewanella amazonensis SB2B PspA/IM30 protein YP_928540.1 3194439 D 326297 CDS YP_928541.1 119775801 4604916 3195228..3195875 1 NC_008700.1 KEGG: son:SO3766 hypothetical protein; hypothetical protein 3195875 4604916 Sama_2669 Shewanella amazonensis SB2B hypothetical protein YP_928541.1 3195228 D 326297 CDS YP_928542.1 119775802 4604917 3195872..3196201 1 NC_008700.1 KEGG: son:SO3767 hypothetical protein; hypothetical protein 3196201 4604917 Sama_2670 Shewanella amazonensis SB2B hypothetical protein YP_928542.1 3195872 D 326297 CDS YP_928543.1 119775803 4604918 3196235..3197077 1 NC_008700.1 KEGG: son:SO3768 ion transporter; ion transporter 3197077 4604918 Sama_2671 Shewanella amazonensis SB2B ion transporter YP_928543.1 3196235 D 326297 CDS YP_928544.1 119775804 4604919 complement(3197203..3198681) 1 NC_008700.1 KEGG: son:SO3769 hypothetical protein; hypothetical protein 3198681 4604919 Sama_2672 Shewanella amazonensis SB2B hypothetical protein YP_928544.1 3197203 R 326297 CDS YP_928545.1 119775805 4604920 3198913..3199593 1 NC_008700.1 KEGG: sdn:Sden_0692 protein of unknown function DUF47; hypothetical protein 3199593 4604920 Sama_2673 Shewanella amazonensis SB2B hypothetical protein YP_928545.1 3198913 D 326297 CDS YP_928546.1 119775806 4604921 3199609..3200880 1 NC_008700.1 KEGG: sdn:Sden_0691 phosphate transporter; phosphate transporter 3200880 4604921 Sama_2674 Shewanella amazonensis SB2B phosphate transporter YP_928546.1 3199609 D 326297 CDS YP_928547.1 119775807 4604922 3201008..3201610 1 NC_008700.1 KEGG: son:SO3772 SH3 domain protein; SH3 domain-containing protein 3201610 4604922 Sama_2675 Shewanella amazonensis SB2B SH3 domain-containing protein YP_928547.1 3201008 D 326297 CDS YP_928548.1 119775808 4604923 3201868..3205044 1 NC_008700.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3205044 4604923 Sama_2676 Shewanella amazonensis SB2B bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_928548.1 3201868 D 326297 CDS YP_928549.1 119775809 4604924 3205164..3205340 1 NC_008700.1 KEGG: son:SO3777 hypothetical protein; hypothetical protein 3205340 4604924 Sama_2677 Shewanella amazonensis SB2B hypothetical protein YP_928549.1 3205164 D 326297 CDS YP_928550.1 119775810 4604925 complement(3205426..3207153) 1 NC_008700.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 3207153 4604925 Sama_2678 Shewanella amazonensis SB2B cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_928550.1 3205426 R 326297 CDS YP_928551.1 119775811 4604926 complement(3207150..3208943) 1 NC_008700.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 3208943 4604926 Sama_2679 Shewanella amazonensis SB2B cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_928551.1 3207150 R 326297 CDS YP_928552.1 119775812 4604927 complement(3209177..3210439) 1 NC_008700.1 KEGG: son:SO3782 hypothetical protein; hypothetical protein 3210439 4604927 Sama_2680 Shewanella amazonensis SB2B hypothetical protein YP_928552.1 3209177 R 326297 CDS YP_928553.1 119775813 4604928 3210736..3211917 1 NC_008700.1 KEGG: sdn:Sden_3482 nitrite reductase, copper containing; nitrite reductase (NO-forming) 3211917 4604928 Sama_2681 Shewanella amazonensis SB2B nitrite reductase (NO-forming) YP_928553.1 3210736 D 326297 CDS YP_928554.1 119775814 4604929 3212088..3213005 1 NC_008700.1 KEGG: sdn:Sden_3481 hypothetical protein; hypothetical protein 3213005 4604929 Sama_2682 Shewanella amazonensis SB2B hypothetical protein YP_928554.1 3212088 D 326297 CDS YP_928555.1 119775815 4604930 3213020..3213679 1 NC_008700.1 KEGG: sdn:Sden_3480 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3213679 4604930 Sama_2683 Shewanella amazonensis SB2B electron transport protein SCO1/SenC YP_928555.1 3213020 D 326297 CDS YP_928556.1 119775816 4604931 3213722..3214195 1 NC_008700.1 KEGG: sdn:Sden_3479 protein of unknown function DUF461; hypothetical protein 3214195 4604931 Sama_2684 Shewanella amazonensis SB2B hypothetical protein YP_928556.1 3213722 D 326297 CDS YP_928557.1 119775817 4604932 3214288..3215106 1 NC_008700.1 catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase-like protein; KEGG: sdn:Sden_3444 cyclic nucleotide-binding; cAMP-binding protein 3215106 4604932 Sama_2685 Shewanella amazonensis SB2B cAMP-binding protein YP_928557.1 3214288 D 326297 CDS YP_928558.1 119775818 4604933 complement(3215152..3215679) 1 NC_008700.1 KEGG: son:SO1605 lipoprotein, putative; putative lipoprotein 3215679 4604933 Sama_2686 Shewanella amazonensis SB2B putative lipoprotein YP_928558.1 3215152 R 326297 CDS YP_928559.1 119775819 4604934 3215921..3217522 1 NC_008700.1 KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3217522 4604934 Sama_2687 Shewanella amazonensis SB2B DEAD/DEAH box helicase YP_928559.1 3215921 D 326297 CDS YP_928560.1 119775820 4604935 complement(3217605..3218171) 1 NC_008700.1 KEGG: bbr:BB2475 hypothetical protein; hypothetical protein 3218171 4604935 Sama_2688 Shewanella amazonensis SB2B hypothetical protein YP_928560.1 3217605 R 326297 CDS YP_928561.1 119775821 4604936 complement(3218182..3218928) 1 NC_008700.1 KEGG: cps:CPS_4904 hypothetical protein; hypothetical protein 3218928 4604936 Sama_2689 Shewanella amazonensis SB2B hypothetical protein YP_928561.1 3218182 R 326297 CDS YP_928562.1 119775822 4604937 3219020..3219586 1 NC_008700.1 KEGG: mca:MCA2045 transcriptional regulator, MarR family; MarR family transcriptional regulator 3219586 4604937 Sama_2690 Shewanella amazonensis SB2B MarR family transcriptional regulator YP_928562.1 3219020 D 326297 CDS YP_928563.1 119775823 4604938 complement(3219639..3219923) 1 NC_008700.1 hypothetical protein 3219923 4604938 Sama_2691 Shewanella amazonensis SB2B hypothetical protein YP_928563.1 3219639 R 326297 CDS YP_928564.1 119775824 4604939 3220081..3220410 1 NC_008700.1 KEGG: vpa:VPA1414 hypothetical protein; hypothetical protein 3220410 4604939 Sama_2692 Shewanella amazonensis SB2B hypothetical protein YP_928564.1 3220081 D 326297 CDS YP_928565.1 119775825 4604940 3220543..3221337 1 NC_008700.1 KEGG: cps:CPS_3143 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 3221337 4604940 Sama_2693 Shewanella amazonensis SB2B PhzF family phenazine biosynthesis protein YP_928565.1 3220543 D 326297 CDS YP_928566.1 119775826 4604941 3221488..3221988 1 NC_008700.1 KEGG: ppr:PBPRA1652 hypothetical protein; hypothetical protein 3221988 4604941 Sama_2694 Shewanella amazonensis SB2B hypothetical protein YP_928566.1 3221488 D 326297 CDS YP_928567.1 119775827 4604942 3222217..3222984 1 NC_008700.1 KEGG: pha:PSHAa2901 periplasmic peptidyl-prolyl cis-trans isomerase; periplasmic peptidyl-prolyl cis-trans isomerase 3222984 4604942 Sama_2695 Shewanella amazonensis SB2B periplasmic peptidyl-prolyl cis-trans isomerase YP_928567.1 3222217 D 326297 CDS YP_928568.1 119775828 4604943 3223473..3228692 1 NC_008700.1 KEGG: son:SO4539 serine protease, subtilase family; serine protease 3228692 4604943 Sama_2696 Shewanella amazonensis SB2B serine protease YP_928568.1 3223473 D 326297 CDS YP_928569.1 119775829 4604944 3229016..3229861 1 NC_008700.1 KEGG: sde:Sde_0548 PAS/PAC sensor signal transduction histidine kinase; hypothetical protein 3229861 4604944 Sama_2697 Shewanella amazonensis SB2B hypothetical protein YP_928569.1 3229016 D 326297 CDS YP_928570.1 119775830 4604945 3229867..3230262 1 NC_008700.1 hypothetical protein 3230262 4604945 Sama_2698 Shewanella amazonensis SB2B hypothetical protein YP_928570.1 3229867 D 326297 CDS YP_928571.1 119775831 4604946 3230262..3230963 1 NC_008700.1 KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory; response regulator receiver protein 3230963 4604946 Sama_2699 Shewanella amazonensis SB2B response regulator receiver protein YP_928571.1 3230262 D 326297 CDS YP_928572.1 119775832 4604947 3230957..3232195 1 NC_008700.1 KEGG: pha:PSHAa0854 sensory histidine kinase in two-component regulatory system with RstA; sensory histidine kinase in two-component regulatory system with RstA 3232195 4604947 Sama_2700 Shewanella amazonensis SB2B sensory histidine kinase in two-component regulatory system with RstA YP_928572.1 3230957 D 326297 CDS YP_928573.1 119775833 4604948 3232313..3232876 1 NC_008700.1 KEGG: mst:Msp_0035 predicted peptidyl-prolyl cis-trans isomerase 1; peptidyl-prolyl cis-trans isomerase 3232876 4604948 Sama_2701 Shewanella amazonensis SB2B peptidyl-prolyl cis-trans isomerase YP_928573.1 3232313 D 326297 CDS YP_928574.1 119775834 4604949 complement(3233045..3234166) 1 NC_008700.1 KEGG: she:Shewmr4_2190 hypothetical protein; hypothetical protein 3234166 4604949 Sama_2702 Shewanella amazonensis SB2B hypothetical protein YP_928574.1 3233045 R 326297 CDS YP_928575.1 119775835 4604950 complement(3234252..3235112) 1 NC_008700.1 KEGG: son:SO0540 hypothetical protein; hypothetical protein 3235112 4604950 Sama_2703 Shewanella amazonensis SB2B hypothetical protein YP_928575.1 3234252 R 326297 CDS YP_928576.1 119775836 4604951 3235328..3236488 1 NC_008700.1 KEGG: hch:HCH_01597 sterol desaturase; sterol desaturase 3236488 4604951 Sama_2704 Shewanella amazonensis SB2B sterol desaturase YP_928576.1 3235328 D 326297 CDS YP_928577.1 119775837 4604952 complement(3236564..3238522) 1 NC_008700.1 KEGG: cps:CPS_2285 hypothetical protein; hypothetical protein 3238522 4604952 Sama_2705 Shewanella amazonensis SB2B hypothetical protein YP_928577.1 3236564 R 326297 CDS YP_928578.1 119775838 4604953 complement(3238559..3238990) 1 NC_008700.1 KEGG: cps:CPS_2286 hypothetical protein; hypothetical protein 3238990 4604953 Sama_2706 Shewanella amazonensis SB2B hypothetical protein YP_928578.1 3238559 R 326297 CDS YP_928579.1 119775839 4604954 3239378..3239797 1 NC_008700.1 KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; gamma-carboxymuconolactone decarboxylase subunit-like protein 3239797 4604954 Sama_2707 Shewanella amazonensis SB2B gamma-carboxymuconolactone decarboxylase subunit-like protein YP_928579.1 3239378 D 326297 CDS YP_928580.1 119775840 4604955 3239991..3241058 1 NC_008700.1 KEGG: pca:Pcar_1086 conserved hypothetical signal peptide protein; putative signal peptide protein 3241058 4604955 Sama_2708 Shewanella amazonensis SB2B putative signal peptide protein YP_928580.1 3239991 D 326297 CDS YP_928581.1 119775841 4604956 3241154..3242200 1 NC_008700.1 KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase family protein 3242200 4604956 Sama_2709 Shewanella amazonensis SB2B D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_928581.1 3241154 D 326297 CDS YP_928582.1 119775842 4604957 complement(3242219..3242575) 1 NC_008700.1 KEGG: rso:RSc0630 hypothetical protein; hypothetical protein 3242575 4604957 Sama_2710 Shewanella amazonensis SB2B hypothetical protein YP_928582.1 3242219 R 326297 CDS YP_928583.1 119775843 4604958 complement(3242612..3243124) 1 NC_008700.1 KEGG: yps:YPTB1990 hypothetical protein; hypothetical protein 3243124 4604958 Sama_2711 Shewanella amazonensis SB2B hypothetical protein YP_928583.1 3242612 R 326297 CDS YP_928584.1 119775844 4604959 3243345..3244244 1 NC_008700.1 KEGG: bcn:Bcen_5825 transcriptional regulator, AraC family; AraC family transcriptional regulator 3244244 4604959 Sama_2712 Shewanella amazonensis SB2B AraC family transcriptional regulator YP_928584.1 3243345 D 326297 CDS YP_928585.1 119775845 4604960 complement(3244382..3246451) 1 NC_008700.1 KEGG: hch:HCH_03335 thiol:disulfide interchange protein; thiol:disulfide interchange protein 3246451 4604960 Sama_2713 Shewanella amazonensis SB2B thiol:disulfide interchange protein YP_928585.1 3244382 R 326297 CDS YP_928586.1 119775846 4604961 complement(3246555..3247646) 1 NC_008700.1 KEGG: hch:HCH_03334 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin 3247646 4604961 Sama_2714 Shewanella amazonensis SB2B thiol-disulfide isomerase and thioredoxin YP_928586.1 3246555 R 326297 CDS YP_928587.1 119775847 4604962 3247878..3248696 1 NC_008700.1 KEGG: bfs:BF2896 putative regulatory protein; putative regulatory protein 3248696 4604962 Sama_2715 Shewanella amazonensis SB2B putative regulatory protein YP_928587.1 3247878 D 326297 CDS YP_928588.1 119775848 4604963 complement(3249614..3250489) 1 NC_008700.1 hypothetical protein 3250489 4604963 Sama_2716 Shewanella amazonensis SB2B hypothetical protein YP_928588.1 3249614 R 326297 CDS YP_928589.1 119775849 4604964 3250593..3250952 1 NC_008700.1 KEGG: rxy:Rxyl_0586 transcriptional regulator, XRE family; hypothetical protein 3250952 4604964 Sama_2717 Shewanella amazonensis SB2B hypothetical protein YP_928589.1 3250593 D 326297 CDS YP_928590.1 119775850 4604965 3250949..3251749 1 NC_008700.1 KEGG: xac:XAC1494 hypothetical protein; hypothetical protein 3251749 4604965 Sama_2718 Shewanella amazonensis SB2B hypothetical protein YP_928590.1 3250949 D 326297 CDS YP_928591.1 119775851 4604966 complement(3252165..3255053) 1 NC_008700.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3255053 4604966 Sama_2719 Shewanella amazonensis SB2B glycine dehydrogenase YP_928591.1 3252165 R 326297 CDS YP_928592.1 119775852 4604967 complement(3255155..3255544) 1 NC_008700.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3255544 4604967 Sama_2720 Shewanella amazonensis SB2B glycine cleavage system protein H YP_928592.1 3255155 R 326297 CDS YP_928593.1 119775853 4604968 complement(3255570..3256664) 1 NC_008700.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3256664 gcvT 4604968 gcvT Shewanella amazonensis SB2B glycine cleavage system aminomethyltransferase T YP_928593.1 3255570 R 326297 CDS YP_928594.1 119775854 4604969 complement(3256945..3258126) 1 NC_008700.1 KEGG: sdn:Sden_0832 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3258126 4604969 Sama_2722 Shewanella amazonensis SB2B UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_928594.1 3256945 R 326297 CDS YP_928595.1 119775855 4604970 complement(3258150..3259445) 1 NC_008700.1 KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-octaprenyl-6-methoxyphenol hydroxylase 3259445 4604970 Sama_2723 Shewanella amazonensis SB2B 2-octaprenyl-6-methoxyphenol hydroxylase YP_928595.1 3258150 R 326297 CDS YP_928596.1 119775856 4604971 complement(3259476..3260051) 1 NC_008700.1 KEGG: sdn:Sden_0830 YgfB and YecA; YgfB/YecA protein 3260051 4604971 Sama_2724 Shewanella amazonensis SB2B YgfB/YecA protein YP_928596.1 3259476 R 326297 CDS YP_928597.1 119775857 4604972 3260301..3260609 1 NC_008700.1 KEGG: sdn:Sden_0829 protein of unknown function DUF710; hypothetical protein 3260609 4604972 Sama_2725 Shewanella amazonensis SB2B hypothetical protein YP_928597.1 3260301 D 326297 CDS YP_928598.1 119775858 4604973 3260851..3261537 1 NC_008700.1 KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3261537 4604973 Sama_2726 Shewanella amazonensis SB2B 5-formyltetrahydrofolate cyclo-ligase YP_928598.1 3260851 D 326297 CDS YP_928599.1 119775859 4604974 3261614..3262528 1 NC_008700.1 KEGG: ppr:PBPRB1899 hypothetical protein; hypothetical protein 3262528 4604974 Sama_2727 Shewanella amazonensis SB2B hypothetical protein YP_928599.1 3261614 D 326297 CDS YP_928600.1 119775860 4604975 3262619..3263845 1 NC_008700.1 KEGG: ppr:PBPRB1900 hypothetical protein; hypothetical protein 3263845 4604975 Sama_2728 Shewanella amazonensis SB2B hypothetical protein YP_928600.1 3262619 D 326297 CDS YP_928601.1 119775861 4604976 3263947..3264408 1 NC_008700.1 hypothetical protein 3264408 4604976 Sama_2729 Shewanella amazonensis SB2B hypothetical protein YP_928601.1 3263947 D 326297 CDS YP_928602.1 119775862 4604977 3264656..3264850 1 NC_008700.1 hypothetical protein 3264850 4604977 Sama_2730 Shewanella amazonensis SB2B hypothetical protein YP_928602.1 3264656 D 326297 CDS YP_928603.1 119775863 4604978 3265052..3265831 1 NC_008700.1 KEGG: psb:Psyr_0171 EAL; putative diguanylate phosphodiesterase 3265831 4604978 Sama_2731 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_928603.1 3265052 D 326297 CDS YP_928604.1 119775864 4604979 complement(3265982..3266551) 1 NC_008700.1 KEGG: sdn:Sden_1799 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 3266551 4604979 Sama_2732 Shewanella amazonensis SB2B NAD(P)H dehydrogenase (quinone) YP_928604.1 3265982 R 326297 CDS YP_928605.1 119775865 4604980 complement(3266587..3266994) 1 NC_008700.1 KEGG: sdn:Sden_1798 regulatory protein, MerR; MerR family transcriptional regulator 3266994 4604980 Sama_2733 Shewanella amazonensis SB2B MerR family transcriptional regulator YP_928605.1 3266587 R 326297 CDS YP_928606.1 119775866 4604981 complement(3267020..3268066) 1 NC_008700.1 KEGG: vpa:VPA0296 putative oxidoreductase protein; putative oxidoreductase protein 3268066 4604981 Sama_2734 Shewanella amazonensis SB2B putative oxidoreductase protein YP_928606.1 3267020 R 326297 CDS YP_928607.1 119775867 4604982 complement(3268191..3269120) 1 NC_008700.1 KEGG: sdn:Sden_1821 protein of unknown function DUF808; hypothetical protein 3269120 4604982 Sama_2735 Shewanella amazonensis SB2B hypothetical protein YP_928607.1 3268191 R 326297 CDS YP_928608.1 119775868 4604983 3269321..3269980 1 NC_008700.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3269980 4604983 Sama_2736 Shewanella amazonensis SB2B ribose-5-phosphate isomerase A YP_928608.1 3269321 D 326297 CDS YP_928609.1 119775869 4604984 complement(3270060..3271784) 1 NC_008700.1 KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3271784 4604984 Sama_2737 Shewanella amazonensis SB2B single-stranded-DNA-specific exonuclease RecJ YP_928609.1 3270060 R 326297 CDS YP_928610.1 119775870 4604985 complement(3271872..3272600) 1 NC_008700.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 3272600 4604985 Sama_2738 Shewanella amazonensis SB2B thiol:disulfide interchange protein DsbC YP_928610.1 3271872 R 326297 CDS YP_928611.1 119775871 4604986 complement(3272740..3273705) 1 NC_008700.1 KEGG: son:SO0950 integrase/recombinase XerD; integrase/recombinase XerD 3273705 4604986 Sama_2739 Shewanella amazonensis SB2B integrase/recombinase XerD YP_928611.1 3272740 R 326297 CDS YP_928612.1 119775872 4604987 complement(3273768..3275093) 1 NC_008700.1 KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein BrnQ 3275093 4604987 Sama_2740 Shewanella amazonensis SB2B branched-chain amino acid transport system II carrier protein BrnQ YP_928612.1 3273768 R 326297 CDS YP_928613.1 119775873 4604988 3275568..3276311 1 NC_008700.1 KEGG: son:SO0948 hypothetical protein; hypothetical protein 3276311 4604988 Sama_2741 Shewanella amazonensis SB2B hypothetical protein YP_928613.1 3275568 D 326297 CDS YP_928614.1 119775874 4604989 3276377..3278218 1 NC_008700.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3278218 4604989 Sama_2742 Shewanella amazonensis SB2B ATP-dependent RNA helicase SrmB YP_928614.1 3276377 D 326297 CDS YP_928615.1 119775875 4604990 3278415..3279641 1 NC_008700.1 KEGG: son:SO0946 hypothetical protein; hypothetical protein 3279641 4604990 Sama_2743 Shewanella amazonensis SB2B hypothetical protein YP_928615.1 3278415 D 326297 CDS YP_928616.1 119775876 4604991 3279641..3282844 1 NC_008700.1 KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 3282844 4604991 Sama_2744 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_928616.1 3279641 D 326297 CDS YP_928617.1 119775877 4604992 3282978..3283616 1 NC_008700.1 KEGG: son:SO0944 hypothetical protein; hypothetical protein 3283616 4604992 Sama_2745 Shewanella amazonensis SB2B hypothetical protein YP_928617.1 3282978 D 326297 CDS YP_928618.1 119775878 4604993 3283708..3285927 1 NC_008700.1 KEGG: son:SO0943 sensory box protein, putative; sensory box protein 3285927 4604993 Sama_2746 Shewanella amazonensis SB2B sensory box protein YP_928618.1 3283708 D 326297 CDS YP_928619.1 119775879 4604994 complement(3285917..3287320) 1 NC_008700.1 KEGG: son:SO0942 hypothetical protein; hypothetical protein 3287320 4604994 Sama_2747 Shewanella amazonensis SB2B hypothetical protein YP_928619.1 3285917 R 326297 CDS YP_928620.1 119775880 4604995 complement(3287410..3287925) 1 NC_008700.1 KEGG: son:SO0941 hypothetical protein; hypothetical protein 3287925 4604995 Sama_2748 Shewanella amazonensis SB2B hypothetical protein YP_928620.1 3287410 R 326297 CDS YP_928621.1 119775881 4604996 complement(3287918..3288673) 1 NC_008700.1 KEGG: son:SO0940 transcriptional regulator-related protein; putative transcriptional regulator CadC 3288673 4604996 Sama_2749 Shewanella amazonensis SB2B putative transcriptional regulator CadC YP_928621.1 3287918 R 326297 CDS YP_928622.1 119775882 4604997 3289078..3289896 1 NC_008700.1 KEGG: son:SO0939 cytochrome c, putative; cytochrome c 3289896 4604997 Sama_2750 Shewanella amazonensis SB2B cytochrome c YP_928622.1 3289078 D 326297 CDS YP_928623.1 119775883 4604998 3289906..3290433 1 NC_008700.1 KEGG: son:SO0938 hypothetical protein; hypothetical protein 3290433 4604998 Sama_2751 Shewanella amazonensis SB2B hypothetical protein YP_928623.1 3289906 D 326297 CDS YP_928624.1 119775884 4604999 complement(3290523..3290936) 1 NC_008700.1 hypothetical protein 3290936 4604999 Sama_2752 Shewanella amazonensis SB2B hypothetical protein YP_928624.1 3290523 R 326297 CDS YP_928625.1 119775885 4605000 complement(3291091..3292563) 1 NC_008700.1 KEGG: son:SO0935 Na+/H+ antiporter; Na+/H+ antiporter 3292563 4605000 Sama_2753 Shewanella amazonensis SB2B Na+/H+ antiporter YP_928625.1 3291091 R 326297 CDS YP_928626.1 119775886 4605001 complement(3292754..3293497) 1 NC_008700.1 KEGG: son:SO0934 hypothetical protein; hypothetical protein 3293497 4605001 Sama_2754 Shewanella amazonensis SB2B hypothetical protein YP_928626.1 3292754 R 326297 CDS YP_928627.1 119775887 4605002 complement(3293618..3295111) 1 NC_008700.1 KEGG: rsp:RSP_2375 hypothetical protein; hypothetical protein 3295111 4605002 Sama_2755 Shewanella amazonensis SB2B hypothetical protein YP_928627.1 3293618 R 326297 CDS YP_928628.1 119775888 4605003 complement(3295251..3296318) 1 NC_008700.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3296318 4605003 Sama_2756 Shewanella amazonensis SB2B fructose-1,6-bisphosphate aldolase YP_928628.1 3295251 R 326297 CDS YP_928629.1 119775889 4605004 complement(3296451..3297632) 1 NC_008700.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3297632 pgk 4605004 pgk Shewanella amazonensis SB2B phosphoglycerate kinase YP_928629.1 3296451 R 326297 CDS YP_928630.1 119775890 4605005 complement(3297714..3298730) 1 NC_008700.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3298730 4605005 Sama_2758 Shewanella amazonensis SB2B erythrose 4-phosphate dehydrogenase YP_928630.1 3297714 R 326297 CDS YP_928631.1 119775891 4605006 complement(3298852..3300843) 1 NC_008700.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3300843 4605006 Sama_2759 Shewanella amazonensis SB2B transketolase YP_928631.1 3298852 R 326297 CDS YP_928632.1 119775892 4605007 3301224..3302375 1 NC_008700.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3302375 4605007 Sama_2760 Shewanella amazonensis SB2B S-adenosylmethionine synthetase YP_928632.1 3301224 D 326297 CDS YP_928633.1 119775893 4605008 complement(3302497..3302814) 1 NC_008700.1 KEGG: son:SO0927 hypothetical protein; hypothetical protein 3302814 4605008 Sama_2761 Shewanella amazonensis SB2B hypothetical protein YP_928633.1 3302497 R 326297 CDS YP_928634.1 119775894 4605009 complement(3302819..3304855) 1 NC_008700.1 KEGG: vvu:VV13056 FOG: EAL domain; putative diguanylate phosphodiesterase 3304855 4605009 Sama_2762 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_928634.1 3302819 R 326297 CDS YP_928635.1 119775895 4605010 complement(3304935..3305486) 1 NC_008700.1 KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase 3305486 4605010 Sama_2763 Shewanella amazonensis SB2B acetyltransferase YP_928635.1 3304935 R 326297 CDS YP_928636.1 119775896 4605011 3305629..3306606 1 NC_008700.1 KEGG: son:SO0925 GGDEF domain protein protein; diguanylate cyclase 3306606 4605011 Sama_2764 Shewanella amazonensis SB2B diguanylate cyclase YP_928636.1 3305629 D 326297 CDS YP_928637.1 119775897 4605012 3306692..3307606 1 NC_008700.1 KEGG: son:SO0925 GGDEF domain protein protein; hypothetical protein 3307606 4605012 Sama_2765 Shewanella amazonensis SB2B hypothetical protein YP_928637.1 3306692 D 326297 CDS YP_928638.1 119775898 4605013 complement(3307638..3307886) 1 NC_008700.1 KEGG: son:SO0924 hypothetical protein; hypothetical protein 3307886 4605013 Sama_2766 Shewanella amazonensis SB2B hypothetical protein YP_928638.1 3307638 R 326297 CDS YP_928639.1 119775899 4605014 3307913..3308335 1 NC_008700.1 KEGG: son:SO0923 hypothetical protein; hypothetical protein 3308335 4605014 Sama_2767 Shewanella amazonensis SB2B hypothetical protein YP_928639.1 3307913 D 326297 CDS YP_928640.1 119775900 4605015 complement(3308509..3309801) 1 NC_008700.1 KEGG: son:SO0922 proton/glutamate symporter; proton/glutamate symporter 3309801 4605015 Sama_2768 Shewanella amazonensis SB2B proton/glutamate symporter YP_928640.1 3308509 R 326297 CDS YP_928641.1 119775901 4605016 complement(3309936..3310241) 1 NC_008700.1 KEGG: son:SO0921 hypothetical protein; hypothetical protein 3310241 4605016 Sama_2769 Shewanella amazonensis SB2B hypothetical protein YP_928641.1 3309936 R 326297 CDS YP_928642.1 119775902 4605017 3310488..3310940 1 NC_008700.1 KEGG: sdn:Sden_0864 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3310940 4605017 Sama_2770 Shewanella amazonensis SB2B N-acetyltransferase GCN5 YP_928642.1 3310488 D 326297 CDS YP_928643.1 119775903 4605018 complement(3310994..3312388) 1 NC_008700.1 KEGG: yps:YPTB1647 L-serine dehydratase; L-serine ammonia-lyase 3312388 4605018 Sama_2771 Shewanella amazonensis SB2B L-serine ammonia-lyase YP_928643.1 3310994 R 326297 CDS YP_928644.1 119775904 4605019 complement(3312408..3313724) 1 NC_008700.1 KEGG: shm:Shewmr7_3262 amino acid transporter, transmembrane; amino acid transporter, transmembrane 3313724 4605019 Sama_2772 Shewanella amazonensis SB2B amino acid transporter, transmembrane YP_928644.1 3312408 R 326297 CDS YP_928645.1 119775905 4605020 complement(3314064..3316622) 1 NC_008700.1 KEGG: son:SO0918 aculeacin A acylase; aculeacin A acylase 3316622 4605020 Sama_2773 Shewanella amazonensis SB2B aculeacin A acylase YP_928645.1 3314064 R 326297 CDS YP_928646.1 119775906 4605021 3316862..3317425 1 NC_008700.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3317425 4605021 Sama_2774 Shewanella amazonensis SB2B NTPase YP_928646.1 3316862 D 326297 CDS YP_928647.1 119775907 4605022 3317499..3318437 1 NC_008700.1 KEGG: son:SO0916 putative acetyltransferase; putative acetyltransferase 3318437 4605022 Sama_2775 Shewanella amazonensis SB2B putative acetyltransferase YP_928647.1 3317499 D 326297 CDS YP_928648.1 119775908 4605023 3318543..3319580 1 NC_008700.1 KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase family oxidoreductase 3319580 4605023 Sama_2776 Shewanella amazonensis SB2B aldo/keto reductase family oxidoreductase YP_928648.1 3318543 D 326297 CDS YP_928649.1 119775909 4605024 3319713..3320942 1 NC_008700.1 KEGG: son:SO3789 aminotransferase, class V; class V aminotransferase 3320942 4605024 Sama_2777 Shewanella amazonensis SB2B class V aminotransferase YP_928649.1 3319713 D 326297 CDS YP_928650.1 119775910 4605025 3320960..3321418 1 NC_008700.1 KEGG: son:SO3790 hypothetical protein; hypothetical protein 3321418 4605025 Sama_2778 Shewanella amazonensis SB2B hypothetical protein YP_928650.1 3320960 D 326297 CDS YP_928651.1 119775911 4605026 3321415..3322554 1 NC_008700.1 KEGG: son:SO3791 renal dipeptidase family protein; dipeptidase 3322554 4605026 Sama_2779 Shewanella amazonensis SB2B dipeptidase YP_928651.1 3321415 D 326297 CDS YP_928652.1 119775912 4605027 complement(3322665..3323534) 1 NC_008700.1 hypothetical protein 3323534 4605027 Sama_2780 Shewanella amazonensis SB2B hypothetical protein YP_928652.1 3322665 R 326297 CDS YP_928653.1 119775913 4605028 complement(3323531..3324292) 1 NC_008700.1 hypothetical protein 3324292 4605028 Sama_2781 Shewanella amazonensis SB2B hypothetical protein YP_928653.1 3323531 R 326297 CDS YP_928654.1 119775914 4605029 complement(3324591..3325520) 1 NC_008700.1 KEGG: sco:SCO6138 putative transmembrane protein; hypothetical protein 3325520 4605029 Sama_2782 Shewanella amazonensis SB2B hypothetical protein YP_928654.1 3324591 R 326297 CDS YP_928655.1 119775915 4605030 complement(3325845..3326768) 1 NC_008700.1 KEGG: sdn:Sden_2840 protein of unknown function DUF368; hypothetical protein 3326768 4605030 Sama_2783 Shewanella amazonensis SB2B hypothetical protein YP_928655.1 3325845 R 326297 CDS YP_928656.1 119775916 4605031 3327053..3327529 1 NC_008700.1 KEGG: sdn:Sden_2841 hypothetical protein; hypothetical protein 3327529 4605031 Sama_2784 Shewanella amazonensis SB2B hypothetical protein YP_928656.1 3327053 D 326297 CDS YP_928657.1 119775917 4605032 complement(3327580..3328335) 1 NC_008700.1 KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 3328335 4605032 Sama_2785 Shewanella amazonensis SB2B pseudouridine synthase, Rsu YP_928657.1 3327580 R 326297 CDS YP_928658.1 119775918 4605033 complement(3328347..3328973) 1 NC_008700.1 KEGG: son:SO3584 hypothetical protein; putative transcriptional regulator 3328973 4605033 Sama_2786 Shewanella amazonensis SB2B putative transcriptional regulator YP_928658.1 3328347 R 326297 CDS YP_928659.1 119775919 4605034 3329137..3329721 1 NC_008700.1 KEGG: son:SO3585 azoreductase, putative; azoreductase 3329721 4605034 Sama_2787 Shewanella amazonensis SB2B azoreductase YP_928659.1 3329137 D 326297 CDS YP_928660.1 119775920 4605035 3329749..3330132 1 NC_008700.1 KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein; glyoxalase/dioxygenase superfamily protein 3330132 4605035 Sama_2788 Shewanella amazonensis SB2B glyoxalase/dioxygenase superfamily protein YP_928660.1 3329749 D 326297 CDS YP_928661.1 119775921 4605036 3330173..3330601 1 NC_008700.1 KEGG: son:SO3586 glyoxalase family protein; glyoxalase family protein 3330601 4605036 Sama_2789 Shewanella amazonensis SB2B glyoxalase family protein YP_928661.1 3330173 D 326297 CDS YP_928662.1 119775922 4605037 complement(3330555..3330977) 1 NC_008700.1 KEGG: vfi:VF1779 tellurite resistance protein TehB; hypothetical protein 3330977 4605037 Sama_2790 Shewanella amazonensis SB2B hypothetical protein YP_928662.1 3330555 R 326297 CDS YP_928663.1 119775923 4605038 3331057..3331557 1 NC_008700.1 KEGG: son:SO3587 hypothetical protein; hypothetical protein 3331557 4605038 Sama_2791 Shewanella amazonensis SB2B hypothetical protein YP_928663.1 3331057 D 326297 CDS YP_928664.1 119775924 4605039 complement(3331602..3332138) 1 NC_008700.1 KEGG: ppr:PBPRB0529 hypothetical acetyltransferase; acetyltransferase 3332138 4605039 Sama_2792 Shewanella amazonensis SB2B acetyltransferase YP_928664.1 3331602 R 326297 CDS YP_928665.1 119775925 4605040 3332367..3332633 1 NC_008700.1 KEGG: son:SO3591 hypothetical protein; hypothetical protein 3332633 4605040 Sama_2793 Shewanella amazonensis SB2B hypothetical protein YP_928665.1 3332367 D 326297 CDS YP_928666.1 119775926 4605041 complement(3332697..3333761) 1 NC_008700.1 KEGG: sdn:Sden_3016 (acyl-carrier-protein) S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase 3333761 4605041 Sama_2794 Shewanella amazonensis SB2B (acyl-carrier-protein) S-malonyltransferase YP_928666.1 3332697 R 326297 CDS YP_928667.1 119775927 4605042 complement(3333758..3336043) 1 NC_008700.1 KEGG: sdn:Sden_3017 transketolase, central region; transketolase, central region 3336043 4605042 Sama_2795 Shewanella amazonensis SB2B transketolase, central region YP_928667.1 3333758 R 326297 CDS YP_928668.1 119775928 4605043 complement(3336103..3337278) 1 NC_008700.1 KEGG: sdn:Sden_3018 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase-like protein 3337278 4605043 Sama_2796 Shewanella amazonensis SB2B acyl-CoA dehydrogenase-like protein YP_928668.1 3336103 R 326297 CDS YP_928669.1 119775929 4605044 3337461..3338297 1 NC_008700.1 KEGG: sdn:Sden_3019 regulatory protein, LysR; regulatory protein LysR 3338297 4605044 Sama_2797 Shewanella amazonensis SB2B regulatory protein LysR YP_928669.1 3337461 D 326297 CDS YP_928670.1 119775930 4605045 3338415..3339299 1 NC_008700.1 KEGG: son:SO3592 putative outer membrane protein; putative outer membrane protein 3339299 4605045 Sama_2798 Shewanella amazonensis SB2B putative outer membrane protein YP_928670.1 3338415 D 326297 CDS YP_928671.1 119775931 4605046 3339299..3339700 1 NC_008700.1 KEGG: son:SO3593 hypothetical protein; hypothetical protein 3339700 4605046 Sama_2799 Shewanella amazonensis SB2B hypothetical protein YP_928671.1 3339299 D 326297 CDS YP_928672.1 119775932 4605047 3339700..3340410 1 NC_008700.1 KEGG: son:SO3594 transcriptional regulatory protein RstA, putative; response regulator receiver protein 3340410 4605047 Sama_2800 Shewanella amazonensis SB2B response regulator receiver protein YP_928672.1 3339700 D 326297 CDS YP_928673.1 119775933 4605048 3340414..3341676 1 NC_008700.1 KEGG: son:SO3595 sensor protein RstB, putative; sensor protein RstB 3341676 4605048 Sama_2801 Shewanella amazonensis SB2B sensor protein RstB YP_928673.1 3340414 D 326297 CDS YP_928674.1 119775934 4605049 complement(3341723..3342082) 1 NC_008700.1 KEGG: son:SO3596 hypothetical protein; hypothetical protein 3342082 4605049 Sama_2802 Shewanella amazonensis SB2B hypothetical protein YP_928674.1 3341723 R 326297 CDS YP_928675.1 119775935 4605050 3342175..3342702 1 NC_008700.1 KEGG: son:SO3597 hypothetical protein; hypothetical protein 3342702 4605050 Sama_2803 Shewanella amazonensis SB2B hypothetical protein YP_928675.1 3342175 D 326297 CDS YP_928676.1 119775936 4605051 complement(3342858..3344330) 1 NC_008700.1 KEGG: son:SO3611 ATPase, AAA family; AAA ATPase 3344330 4605051 Sama_2804 Shewanella amazonensis SB2B AAA ATPase YP_928676.1 3342858 R 326297 CDS YP_928677.1 119775937 4605052 complement(3344416..3345561) 1 NC_008700.1 KEGG: son:SO3603 secretion protein, HlyD family; HlyD family secretion protein 3345561 4605052 Sama_2805 Shewanella amazonensis SB2B HlyD family secretion protein YP_928677.1 3344416 R 326297 CDS YP_928678.1 119775938 4605053 complement(3345564..3345941) 1 NC_008700.1 KEGG: vfi:VFA0380 hypothetical protein; hypothetical protein 3345941 4605053 Sama_2806 Shewanella amazonensis SB2B hypothetical protein YP_928678.1 3345564 R 326297 CDS YP_928679.1 119775939 4605054 3346140..3347318 1 NC_008700.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3347318 purT 4605054 purT Shewanella amazonensis SB2B phosphoribosylglycinamide formyltransferase 2 YP_928679.1 3346140 D 326297 CDS YP_928680.1 119775940 4605055 3347641..3348246 1 NC_008700.1 KEGG: son:SO1188 hypothetical protein; hypothetical protein 3348246 4605055 Sama_2808 Shewanella amazonensis SB2B hypothetical protein YP_928680.1 3347641 D 326297 CDS YP_928681.1 119775941 4605056 3348254..3348769 1 NC_008700.1 KEGG: son:SO1189 lysozyme; hypothetical protein 3348769 4605056 Sama_2809 Shewanella amazonensis SB2B hypothetical protein YP_928681.1 3348254 D 326297 CDS YP_928682.1 119775942 4605057 3348778..3349590 1 NC_008700.1 KEGG: son:SO1190 hypothetical protein; hypothetical protein 3349590 4605057 Sama_2810 Shewanella amazonensis SB2B hypothetical protein YP_928682.1 3348778 D 326297 CDS YP_928683.1 119775943 4605058 complement(3349618..3350571) 1 NC_008700.1 KEGG: son:SO3631 glycerate dehydrogenase; glycerate dehydrogenase 3350571 4605058 Sama_2811 Shewanella amazonensis SB2B glycerate dehydrogenase YP_928683.1 3349618 R 326297 CDS YP_928684.1 119775944 4605059 complement(3350574..3351191) 1 NC_008700.1 KEGG: son:SO3632 hypothetical protein; hypothetical protein 3351191 4605059 Sama_2812 Shewanella amazonensis SB2B hypothetical protein YP_928684.1 3350574 R 326297 CDS YP_928685.1 119775945 4605060 complement(3351208..3351978) 1 NC_008700.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 3351978 djlA 4605060 djlA Shewanella amazonensis SB2B Dna-J like membrane chaperone protein YP_928685.1 3351208 R 326297 CDS YP_928686.1 119775946 4605061 complement(3351988..3352668) 1 NC_008700.1 KEGG: sdn:Sden_2883 nucleotidyl transferase; nucleotidyl transferase 3352668 4605061 Sama_2814 Shewanella amazonensis SB2B nucleotidyl transferase YP_928686.1 3351988 R 326297 CDS YP_928687.1 119775947 4605062 complement(3352665..3353711) 1 NC_008700.1 KEGG: son:SO3635 hypothetical phosphotransferase; phosphotransferase 3353711 4605062 Sama_2815 Shewanella amazonensis SB2B phosphotransferase YP_928687.1 3352665 R 326297 CDS YP_928688.1 119775948 4605063 3353858..3356152 1 NC_008700.1 KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 3356152 4605063 Sama_2816 Shewanella amazonensis SB2B organic solvent tolerance protein YP_928688.1 3353858 D 326297 CDS YP_928689.1 119775949 4605064 3356275..3357579 1 NC_008700.1 KEGG: son:SO3637 survival protein surA; survival protein surA 3357579 4605064 Sama_2817 Shewanella amazonensis SB2B survival protein surA YP_928689.1 3356275 D 326297 CDS YP_928690.1 119775950 4605065 3357585..3358574 1 NC_008700.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3358574 pdxA 4605065 pdxA Shewanella amazonensis SB2B 4-hydroxythreonine-4-phosphate dehydrogenase YP_928690.1 3357585 D 326297 CDS YP_928691.1 119775951 4605066 3358584..3359387 1 NC_008700.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3359387 ksgA 4605066 ksgA Shewanella amazonensis SB2B dimethyladenosine transferase YP_928691.1 3358584 D 326297 CDS YP_928692.1 119775952 4605067 3359415..3359801 1 NC_008700.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 3359801 apaG 4605067 apaG Shewanella amazonensis SB2B ApaG protein YP_928692.1 3359415 D 326297 CDS YP_928693.1 119775953 4605068 3359811..3360623 1 NC_008700.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3360623 apaH 4605068 apaH Shewanella amazonensis SB2B diadenosine tetraphosphatase YP_928693.1 3359811 D 326297 CDS YP_928694.1 119775954 4605069 3360728..3362749 1 NC_008700.1 KEGG: son:SO3642 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3362749 4605069 Sama_2822 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928694.1 3360728 D 326297 CDS YP_928695.1 119775955 4605070 complement(3362978..3363385) 1 NC_008700.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 3363385 4605070 Sama_2823 Shewanella amazonensis SB2B hypothetical protein YP_928695.1 3362978 R 326297 CDS YP_928696.1 119775956 4605071 complement(3363472..3363954) 1 NC_008700.1 KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase 3363954 4605071 Sama_2824 Shewanella amazonensis SB2B dihydrofolate reductase YP_928696.1 3363472 R 326297 CDS YP_928697.1 119775957 4605072 complement(3363979..3364446) 1 NC_008700.1 KEGG: son:SO3647 hypothetical protein; hypothetical protein 3364446 4605072 Sama_2825 Shewanella amazonensis SB2B hypothetical protein YP_928697.1 3363979 R 326297 CDS YP_928698.1 119775958 4605073 complement(3364443..3365204) 1 NC_008700.1 KEGG: son:SO3648 hypothetical protein; hypothetical protein 3365204 4605073 Sama_2826 Shewanella amazonensis SB2B hypothetical protein YP_928698.1 3364443 R 326297 CDS YP_928699.1 119775959 4605074 complement(3365225..3366394) 1 NC_008700.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3366394 obgE 4605074 obgE Shewanella amazonensis SB2B GTPase ObgE YP_928699.1 3365225 R 326297 CDS YP_928700.1 119775960 4605075 complement(3366537..3366791) 1 NC_008700.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3366791 rpmA 4605075 rpmA Shewanella amazonensis SB2B 50S ribosomal protein L27 YP_928700.1 3366537 R 326297 CDS YP_928701.1 119775961 4605076 complement(3366806..3367117) 1 NC_008700.1 KEGG: sdn:Sden_2927 ribosomal protein L21; 50S ribosomal protein L21 3367117 rplU 4605076 rplU Shewanella amazonensis SB2B 50S ribosomal protein L21 YP_928701.1 3366806 R 326297 CDS YP_928702.1 119775962 4605077 3367372..3368373 1 NC_008700.1 KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 3368373 4605077 Sama_2830 Shewanella amazonensis SB2B trans-hexaprenyltranstransferase YP_928702.1 3367372 D 326297 CDS YP_928703.1 119775963 4605078 complement(3368450..3369115) 1 NC_008700.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3369115 4605078 Sama_2831 Shewanella amazonensis SB2B uracil-DNA glycosylase YP_928703.1 3368450 R 326297 CDS YP_928704.1 119775964 4605079 3369295..3369615 1 NC_008700.1 KEGG: son:SO3656 hypothetical protein; hypothetical protein 3369615 4605079 Sama_2832 Shewanella amazonensis SB2B hypothetical protein YP_928704.1 3369295 D 326297 CDS YP_928705.1 119775965 4605080 complement(3369678..3370304) 1 NC_008700.1 KEGG: son:SO3657 transporter, LysE family; amino acid transporter LysE 3370304 4605080 Sama_2833 Shewanella amazonensis SB2B amino acid transporter LysE YP_928705.1 3369678 R 326297 CDS YP_928706.1 119775966 4605081 3370684..3372108 1 NC_008700.1 KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; sigma-54 dependent transcriptional regulator/sensory box protein 3372108 4605081 Sama_2834 Shewanella amazonensis SB2B sigma-54 dependent transcriptional regulator/sensory box protein YP_928706.1 3370684 D 326297 CDS YP_928707.1 119775967 4605082 3372337..3373875 1 NC_008700.1 KEGG: sdn:Sden_2933 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3373875 4605082 Sama_2835 Shewanella amazonensis SB2B 4Fe-4S ferredoxin YP_928707.1 3372337 D 326297 CDS YP_928708.1 119775968 4605083 3374003..3374542 1 NC_008700.1 KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3374542 4605083 Sama_2836 Shewanella amazonensis SB2B thiol:disulfide interchange protein YP_928708.1 3374003 D 326297 CDS YP_928709.1 119775969 4605084 complement(3374612..3375340) 1 NC_008700.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3375340 4605084 Sama_2837 Shewanella amazonensis SB2B phosphoadenosine phosphosulfate reductase YP_928709.1 3374612 R 326297 CDS YP_928710.1 119775970 4605085 complement(3375438..3377153) 1 NC_008700.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3377153 4605085 Sama_2838 Shewanella amazonensis SB2B sulfite reductase subunit beta YP_928710.1 3375438 R 326297 CDS YP_928711.1 119775971 4605086 complement(3377153..3378961) 1 NC_008700.1 KEGG: pha:PSHAa0154 sulfite reductase subunit alpha; sulfite reductase subunit alpha 3378961 4605086 Sama_2839 Shewanella amazonensis SB2B sulfite reductase subunit alpha YP_928711.1 3377153 R 326297 CDS YP_928712.1 119775972 4605087 3379308..3380834 1 NC_008700.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3380834 pntA 4605087 pntA Shewanella amazonensis SB2B NAD(P) transhydrogenase subunit alpha YP_928712.1 3379308 D 326297 CDS YP_928713.1 119775973 4605088 3380847..3382331 1 NC_008700.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3382331 pntB 4605088 pntB Shewanella amazonensis SB2B pyridine nucleotide transhydrogenase YP_928713.1 3380847 D 326297 CDS YP_928714.1 119775974 4605089 3383107..3383544 1 NC_008700.1 KEGG: sde:Sde_1876 cold shock protein; hypothetical protein 3383544 4605089 Sama_2842 Shewanella amazonensis SB2B hypothetical protein YP_928714.1 3383107 D 326297 CDS YP_928715.1 119775975 4605090 3383604..3383912 1 NC_008700.1 KEGG: rfe:RF_0935 hypothetical protein; hypothetical protein 3383912 4605090 Sama_2843 Shewanella amazonensis SB2B hypothetical protein YP_928715.1 3383604 D 326297 CDS YP_928716.1 119775976 4605091 3384008..3384415 1 NC_008700.1 KEGG: dsy:DSY4340 hypothetical protein; hypothetical protein 3384415 4605091 Sama_2844 Shewanella amazonensis SB2B hypothetical protein YP_928716.1 3384008 D 326297 CDS YP_928717.1 119775977 4605092 3384527..3384970 1 NC_008700.1 hypothetical protein 3384970 4605092 Sama_2845 Shewanella amazonensis SB2B hypothetical protein YP_928717.1 3384527 D 326297 CDS YP_928718.1 119775978 4605093 3385074..3386021 1 NC_008700.1 KEGG: par:Psyc_1937 hypothetical protein; hypothetical protein 3386021 4605093 Sama_2846 Shewanella amazonensis SB2B hypothetical protein YP_928718.1 3385074 D 326297 CDS YP_928719.1 119775979 4605094 complement(3386120..3387403) 1 NC_008700.1 KEGG: cps:CPS_1258 putative MFS transporter family protein; putative MFS transporter family protein 3387403 4605094 Sama_2847 Shewanella amazonensis SB2B putative MFS transporter family protein YP_928719.1 3386120 R 326297 CDS YP_928720.1 119775980 4605095 complement(3387689..3388429) 1 NC_008700.1 KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM-like protein 3388429 4605095 Sama_2848 Shewanella amazonensis SB2B SpoOM-like protein YP_928720.1 3387689 R 326297 CDS YP_928721.1 119775981 4605096 complement(3388513..3389403) 1 NC_008700.1 KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator 3389403 4605096 Sama_2849 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928721.1 3388513 R 326297 CDS YP_928722.1 119775982 4605097 3389510..3389872 1 NC_008700.1 KEGG: pat:Patl_2972 DoxX; DoxX protein 3389872 4605097 Sama_2850 Shewanella amazonensis SB2B DoxX protein YP_928722.1 3389510 D 326297 CDS YP_928723.1 119775983 4605098 3390084..3391622 1 NC_008700.1 KEGG: son:SO1505 transporter, putative; transporter 3391622 4605098 Sama_2851 Shewanella amazonensis SB2B transporter YP_928723.1 3390084 D 326297 CDS YP_928724.1 119775984 4605099 complement(3391692..3392363) 1 NC_008700.1 hypothetical protein 3392363 4605099 Sama_2852 Shewanella amazonensis SB2B hypothetical protein YP_928724.1 3391692 R 326297 CDS YP_928725.1 119775985 4605100 complement(3392500..3392931) 1 NC_008700.1 KEGG: sdn:Sden_0976 UspA; hypothetical protein 3392931 4605100 Sama_2853 Shewanella amazonensis SB2B hypothetical protein YP_928725.1 3392500 R 326297 CDS YP_928726.1 119775986 4605101 complement(3392979..3393362) 1 NC_008700.1 KEGG: shm:Shewmr7_3149 hypothetical protein; hypothetical protein 3393362 4605101 Sama_2854 Shewanella amazonensis SB2B hypothetical protein YP_928726.1 3392979 R 326297 CDS YP_928727.1 119775987 4605102 3393525..3394964 1 NC_008700.1 KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; coniferyl aldehyde dehydrogenase 3394964 4605102 Sama_2855 Shewanella amazonensis SB2B coniferyl aldehyde dehydrogenase YP_928727.1 3393525 D 326297 CDS YP_928728.1 119775988 4605103 3394977..3395561 1 NC_008700.1 KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 3395561 4605103 Sama_2856 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_928728.1 3394977 D 326297 CDS YP_928729.1 119775989 4605104 complement(3395680..3396465) 1 NC_008700.1 KEGG: son:SO3685 curli production assembly/transport component CsgG, putative; curli production assembly/transport component CsgG 3396465 4605104 Sama_2857 Shewanella amazonensis SB2B curli production assembly/transport component CsgG YP_928729.1 3395680 R 326297 CDS YP_928730.1 119775990 4605105 complement(3396462..3396851) 1 NC_008700.1 KEGG: son:SO3686 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF 3396851 4605105 Sama_2858 Shewanella amazonensis SB2B curli production assembly/transport component CsgF YP_928730.1 3396462 R 326297 CDS YP_928731.1 119775991 4605106 complement(3396854..3397195) 1 NC_008700.1 KEGG: sdn:Sden_0969 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE 3397195 4605106 Sama_2859 Shewanella amazonensis SB2B curli production assembly/transport component CsgE YP_928731.1 3396854 R 326297 CDS YP_928732.1 119775992 4605107 complement(3397431..3398744) 1 NC_008700.1 KEGG: sdn:Sden_2846 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 3398744 4605107 Sama_2860 Shewanella amazonensis SB2B ATP-binding region, ATPase-like protein YP_928732.1 3397431 R 326297 CDS YP_928733.1 119775993 4605108 complement(3398749..3400263) 1 NC_008700.1 KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; response regulator receiver protein 3400263 4605108 Sama_2861 Shewanella amazonensis SB2B response regulator receiver protein YP_928733.1 3398749 R 326297 CDS YP_928734.1 119775994 4605109 complement(3400256..3401473) 1 NC_008700.1 KEGG: sdn:Sden_2848 protein of unknown function DUF214; hypothetical protein 3401473 4605109 Sama_2862 Shewanella amazonensis SB2B hypothetical protein YP_928734.1 3400256 R 326297 CDS YP_928735.1 119775995 4605110 complement(3401483..3402790) 1 NC_008700.1 KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein 3402790 4605110 Sama_2863 Shewanella amazonensis SB2B hypothetical protein YP_928735.1 3401483 R 326297 CDS YP_928736.1 119775996 4605111 complement(3402800..3403492) 1 NC_008700.1 KEGG: sdn:Sden_2850 ABC transporter related; ABC transporter-like protein 3403492 4605111 Sama_2864 Shewanella amazonensis SB2B ABC transporter-like protein YP_928736.1 3402800 R 326297 CDS YP_928737.1 119775997 4605112 complement(3403659..3404915) 1 NC_008700.1 KEGG: son:SO3694 HlyD family secretion protein; HlyD family secretion protein 3404915 4605112 Sama_2865 Shewanella amazonensis SB2B HlyD family secretion protein YP_928737.1 3403659 R 326297 CDS YP_928738.1 119775998 4605113 complement(3405197..3405580) 1 NC_008700.1 KEGG: son:SO3708 hypothetical protein; hypothetical protein 3405580 4605113 Sama_2866 Shewanella amazonensis SB2B hypothetical protein YP_928738.1 3405197 R 326297 CDS YP_928739.1 119775999 4605114 3405679..3406347 1 NC_008700.1 KEGG: noc:Noc_1690 hypothetical protein; hypothetical protein 3406347 4605114 Sama_2867 Shewanella amazonensis SB2B hypothetical protein YP_928739.1 3405679 D 326297 CDS YP_928740.1 119776000 4605115 complement(3406378..3406824) 1 NC_008700.1 KEGG: pat:Patl_2439 hypothetical protein; hypothetical protein 3406824 4605115 Sama_2868 Shewanella amazonensis SB2B hypothetical protein YP_928740.1 3406378 R 326297 CDS YP_928741.1 119776001 4605116 complement(3406992..3407819) 1 NC_008700.1 KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter substrate-binding protein 3407819 4605116 Sama_2869 Shewanella amazonensis SB2B ABC transporter substrate-binding protein YP_928741.1 3406992 R 326297 CDS YP_928742.1 119776002 4605117 3407998..3409026 1 NC_008700.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3409026 4605117 Sama_2870 Shewanella amazonensis SB2B dihydroorotase YP_928742.1 3407998 D 326297 CDS YP_928743.1 119776003 4605118 complement(3409113..3410807) 1 NC_008700.1 KEGG: hch:HCH_00660 response regulator containing a CheY-like receiver domain and a GGDEF domain protein; response regulator 3410807 4605118 Sama_2871 Shewanella amazonensis SB2B response regulator YP_928743.1 3409113 R 326297 CDS YP_928744.1 119776004 4605119 3411139..3411537 1 NC_008700.1 KEGG: vvy:VV1083 hypothetical protein; hypothetical protein 3411537 4605119 Sama_2872 Shewanella amazonensis SB2B hypothetical protein YP_928744.1 3411139 D 326297 CDS YP_928745.1 119776005 4605120 complement(3411621..3411833) 1 NC_008700.1 KEGG: cps:CPS_3455 hypothetical protein; hypothetical protein 3411833 4605120 Sama_2873 Shewanella amazonensis SB2B hypothetical protein YP_928745.1 3411621 R 326297 CDS YP_928746.1 119776006 4605121 complement(3411841..3412686) 1 NC_008700.1 KEGG: cps:CPS_3456 SPFH domain/Band 7 family protein; hypothetical protein 3412686 4605121 Sama_2874 Shewanella amazonensis SB2B hypothetical protein YP_928746.1 3411841 R 326297 CDS YP_928747.1 119776007 4605122 complement(3412890..3415091) 1 NC_008700.1 KEGG: ilo:IL2514 outer membrane protein; outer membrane protein 3415091 4605122 Sama_2875 Shewanella amazonensis SB2B outer membrane protein YP_928747.1 3412890 R 326297 CDS YP_928748.1 119776008 4605123 3415427..3416368 1 NC_008700.1 hypothetical protein 3416368 4605123 Sama_2876 Shewanella amazonensis SB2B hypothetical protein YP_928748.1 3415427 D 326297 CDS YP_928749.1 119776009 4605124 complement(3416440..3417942) 1 NC_008700.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3417942 lysS 4605124 lysS Shewanella amazonensis SB2B lysyl-tRNA synthetase YP_928749.1 3416440 R 326297 CDS YP_928750.1 119776010 4605125 complement(3417962..3419056) 1 NC_008700.1 KEGG: sdn:Sden_3128 peptide chain release factor 2; peptide chain release factor 2 3419056 4605125 Sama_2878 Shewanella amazonensis SB2B peptide chain release factor 2 YP_928750.1 3417962 R 326297 CDS YP_928751.1 119776011 4605126 3419347..3420330 1 NC_008700.1 KEGG: hch:HCH_00361 uncharacterized low-complexity protein; hypothetical protein 3420330 4605126 Sama_2879 Shewanella amazonensis SB2B hypothetical protein YP_928751.1 3419347 D 326297 CDS YP_928752.1 119776012 4605127 complement(3420502..3422178) 1 NC_008700.1 KEGG: son:SO0987 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3422178 4605127 Sama_2880 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_928752.1 3420502 R 326297 CDS YP_928753.1 119776013 4605128 complement(3422310..3422846) 1 NC_008700.1 KEGG: son:SO3719 hypothetical protein; hypothetical protein 3422846 4605128 Sama_2881 Shewanella amazonensis SB2B hypothetical protein YP_928753.1 3422310 R 326297 CDS YP_928754.1 119776014 4605129 complement(3422843..3423379) 1 NC_008700.1 KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase 3423379 4605129 Sama_2882 Shewanella amazonensis SB2B protoporphyrinogen oxidase YP_928754.1 3422843 R 326297 CDS YP_928755.1 119776015 4605130 3423579..3424817 1 NC_008700.1 KEGG: sdn:Sden_0720 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3424817 4605130 Sama_2883 Shewanella amazonensis SB2B major facilitator superfamily transporter YP_928755.1 3423579 D 326297 CDS YP_928756.1 119776016 4605131 3424840..3425685 1 NC_008700.1 KEGG: son:SO3722 hypothetical protein; hypothetical protein 3425685 4605131 Sama_2884 Shewanella amazonensis SB2B hypothetical protein YP_928756.1 3424840 D 326297 CDS YP_928757.1 119776017 4605132 3425861..3426055 1 NC_008700.1 KEGG: vch:VC1810 hypothetical protein; hypothetical protein 3426055 4605132 Sama_2885 Shewanella amazonensis SB2B hypothetical protein YP_928757.1 3425861 D 326297 CDS YP_928758.1 119776018 4605133 3426623..3427300 1 NC_008700.1 KEGG: dps:DP1920 hypothetical protein; hypothetical protein 3427300 4605133 Sama_2886 Shewanella amazonensis SB2B hypothetical protein YP_928758.1 3426623 D 326297 CDS YP_928759.1 119776019 4605134 3427315..3428589 1 NC_008700.1 KEGG: cps:CPS_2394 GGDEF domain protein protein; diguanylate cyclase 3428589 4605134 Sama_2887 Shewanella amazonensis SB2B diguanylate cyclase YP_928759.1 3427315 D 326297 CDS YP_928760.1 119776020 4605135 complement(3429678..3430274) 1 NC_008700.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3430274 4605135 Sama_2888 Shewanella amazonensis SB2B adenylylsulfate kinase YP_928760.1 3429678 R 326297 CDS YP_928761.1 119776021 4605136 complement(3430297..3432048) 1 NC_008700.1 KEGG: ppr:PBPRA3309 putative sodium/sulfate symporter; putative sodium/sulfate symporter 3432048 4605136 Sama_2889 Shewanella amazonensis SB2B putative sodium/sulfate symporter YP_928761.1 3430297 R 326297 CDS YP_928762.1 119776022 4605137 complement(3432116..3433525) 1 NC_008700.1 KEGG: pha:PSHAa0211 ATP-sulfurylase subunit 1; sulfate adenylyltransferase 3433525 4605137 Sama_2890 Shewanella amazonensis SB2B sulfate adenylyltransferase YP_928762.1 3432116 R 326297 CDS YP_928763.1 119776023 4605138 complement(3433525..3434433) 1 NC_008700.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3434433 4605138 Sama_2891 Shewanella amazonensis SB2B sulfate adenylyltransferase subunit 2 YP_928763.1 3433525 R 326297 CDS YP_928764.1 119776024 4605139 complement(3434479..3435288) 1 NC_008700.1 KEGG: sdn:Sden_0958 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3435288 4605139 Sama_2892 Shewanella amazonensis SB2B uroporphyrin-III C-methyltransferase YP_928764.1 3434479 R 326297 CDS YP_928765.1 119776025 4605140 3435649..3436533 1 NC_008700.1 KEGG: sdn:Sden_0955 phospholipase A1; phospholipase A(1) 3436533 4605140 Sama_2893 Shewanella amazonensis SB2B phospholipase A(1) YP_928765.1 3435649 D 326297 CDS YP_928766.1 119776026 4605141 3436548..3438191 1 NC_008700.1 KEGG: son:SO3731 hypothetical protein; hypothetical protein 3438191 4605141 Sama_2894 Shewanella amazonensis SB2B hypothetical protein YP_928766.1 3436548 D 326297 CDS YP_928767.1 119776027 4605142 complement(3438459..3440168) 1 NC_008700.1 KEGG: son:SO3733 hypothetical protein; hypothetical protein 3440168 4605142 Sama_2895 Shewanella amazonensis SB2B hypothetical protein YP_928767.1 3438459 R 326297 CDS YP_928768.1 119776028 4605143 complement(3440784..3443387) 1 NC_008700.1 KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; putative TonB-dependent outer membrane receptor 3443387 4605143 Sama_2896 Shewanella amazonensis SB2B putative TonB-dependent outer membrane receptor YP_928768.1 3440784 R 326297 CDS YP_928769.1 119776029 4605144 3443727..3445322 1 NC_008700.1 KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; long-chain-fatty-acid--CoA ligase 3445322 4605144 Sama_2897 Shewanella amazonensis SB2B long-chain-fatty-acid--CoA ligase YP_928769.1 3443727 D 326297 CDS YP_928770.1 119776030 4605145 complement(3445442..3446728) 1 NC_008700.1 KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; 4-hydroxybutyrate CoA-transferase 3446728 4605145 Sama_2898 Shewanella amazonensis SB2B 4-hydroxybutyrate CoA-transferase YP_928770.1 3445442 R 326297 CDS YP_928771.1 119776031 4605146 3447126..3448109 1 NC_008700.1 KEGG: son:SO1661 transcriptional regulator, LysR family; transcriptional regulator-like protein 3448109 4605146 Sama_2899 Shewanella amazonensis SB2B transcriptional regulator-like protein YP_928771.1 3447126 D 326297 CDS YP_928772.1 119776032 4605147 complement(3448189..3449163) 1 NC_008700.1 KEGG: son:SO4571 transcriptional regulator, LysR family; hypothetical protein 3449163 4605147 Sama_2900 Shewanella amazonensis SB2B hypothetical protein YP_928772.1 3448189 R 326297 CDS YP_928773.1 119776033 4605148 3449545..3450054 1 NC_008700.1 hypothetical protein 3450054 4605148 Sama_2901 Shewanella amazonensis SB2B hypothetical protein YP_928773.1 3449545 D 326297 CDS YP_928774.1 119776034 4605149 3450153..3450614 1 NC_008700.1 KEGG: hdu:HD0347 nitrate reductase, cytochrome-C type protein; hypothetical protein 3450614 4605149 Sama_2902 Shewanella amazonensis SB2B hypothetical protein YP_928774.1 3450153 D 326297 CDS YP_928775.1 119776035 4605150 3450625..3451317 1 NC_008700.1 KEGG: hit:NTHI1227 NrfC, Fe-S-cluster-containing hydrogenase component 1; NrfC, Fe-S-cluster-containing hydrogenase component 1 3451317 4605150 Sama_2903 Shewanella amazonensis SB2B NrfC, Fe-S-cluster-containing hydrogenase component 1 YP_928775.1 3450625 D 326297 CDS YP_928776.1 119776036 4605151 3451314..3452255 1 NC_008700.1 KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; formate-dependent nitrite reductase complex subunit NrfD 3452255 4605151 Sama_2904 Shewanella amazonensis SB2B formate-dependent nitrite reductase complex subunit NrfD YP_928776.1 3451314 D 326297 CDS YP_928777.1 119776037 4605152 complement(3453033..3454031) 1 NC_008700.1 KEGG: dsy:DSY4538 hypothetical protein; hypothetical protein 3454031 4605152 Sama_2905 Shewanella amazonensis SB2B hypothetical protein YP_928777.1 3453033 R 326297 CDS YP_928778.1 119776038 4605153 complement(3454079..3455068) 1 NC_008700.1 KEGG: son:SO1697 hypothetical protein; hypothetical protein 3455068 4605153 Sama_2906 Shewanella amazonensis SB2B hypothetical protein YP_928778.1 3454079 R 326297 CDS YP_928779.1 119776039 4605154 complement(3455692..3456714) 1 NC_008700.1 KEGG: sde:Sde_3020 hypothetical protein; hypothetical protein 3456714 4605154 Sama_2907 Shewanella amazonensis SB2B hypothetical protein YP_928779.1 3455692 R 326297 CDS YP_928780.1 119776040 4605155 complement(3456847..3458628) 1 NC_008700.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; ABC transporter ATP-binding protein/permease 3458628 4605155 Sama_2908 Shewanella amazonensis SB2B ABC transporter ATP-binding protein/permease YP_928780.1 3456847 R 326297 CDS YP_928781.1 119776041 4605156 3458741..3459832 1 NC_008700.1 hypothetical protein 3459832 4605156 Sama_2909 Shewanella amazonensis SB2B hypothetical protein YP_928781.1 3458741 D 326297 CDS YP_928782.1 119776042 4605157 complement(3459837..3461318) 1 NC_008700.1 KEGG: son:SO3678 hypothetical protein; hypothetical protein 3461318 4605157 Sama_2910 Shewanella amazonensis SB2B hypothetical protein YP_928782.1 3459837 R 326297 CDS YP_928783.1 119776043 4605158 complement(3461315..3461665) 1 NC_008700.1 KEGG: son:SO3679 hypothetical protein; hypothetical protein 3461665 4605158 Sama_2911 Shewanella amazonensis SB2B hypothetical protein YP_928783.1 3461315 R 326297 CDS YP_928784.1 119776044 4605159 3461840..3462370 1 NC_008700.1 KEGG: sde:Sde_3048 hypothetical protein; hypothetical protein 3462370 4605159 Sama_2912 Shewanella amazonensis SB2B hypothetical protein YP_928784.1 3461840 D 326297 CDS YP_928785.1 119776045 4605160 3462367..3463845 1 NC_008700.1 KEGG: ilo:IL1563 hypothetical protein; membrane protein 3463845 4605160 Sama_2913 Shewanella amazonensis SB2B membrane protein YP_928785.1 3462367 D 326297 CDS YP_928786.1 119776046 4605161 3463857..3464399 1 NC_008700.1 KEGG: vpa:VPA0111 hypothetical protein; hypothetical protein 3464399 4605161 Sama_2914 Shewanella amazonensis SB2B hypothetical protein YP_928786.1 3463857 D 326297 CDS YP_928787.1 119776047 4605162 3464523..3465335 1 NC_008700.1 KEGG: sdn:Sden_3307 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3465335 4605162 Sama_2915 Shewanella amazonensis SB2B extracellular solute-binding protein YP_928787.1 3464523 D 326297 CDS YP_928788.1 119776048 4605163 3465462..3466355 1 NC_008700.1 KEGG: hch:HCH_04108 predicted permease, DMT superfamily; DMT family permease 3466355 4605163 Sama_2916 Shewanella amazonensis SB2B DMT family permease YP_928788.1 3465462 D 326297 CDS YP_928789.1 119776049 4605164 3466402..3469029 1 NC_008700.1 KEGG: son:SO1059 aminopeptidase N; aminopeptidase N 3469029 4605164 Sama_2917 Shewanella amazonensis SB2B aminopeptidase N YP_928789.1 3466402 D 326297 CDS YP_928790.1 119776050 4605165 3469134..3470507 1 NC_008700.1 KEGG: sdn:Sden_0469 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3470507 4605165 Sama_2918 Shewanella amazonensis SB2B glycerophosphoryl diester phosphodiesterase YP_928790.1 3469134 D 326297 CDS YP_928791.1 119776051 4605166 complement(3470807..3471580) 1 NC_008700.1 KEGG: eca:ECA1907 DeoR-family transcriptional regulator; DeoR family transcriptional regulator 3471580 4605166 Sama_2919 Shewanella amazonensis SB2B DeoR family transcriptional regulator YP_928791.1 3470807 R 326297 CDS YP_928792.1 119776052 4605167 3471874..3473022 1 NC_008700.1 KEGG: pfo:Pfl_3782 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3473022 4605167 Sama_2920 Shewanella amazonensis SB2B major facilitator superfamily transporter YP_928792.1 3471874 D 326297 CDS YP_928793.1 119776053 4605168 complement(3473330..3474685) 1 NC_008700.1 KEGG: pat:Patl_2539 serine-type D-Ala-D-Ala carboxypeptidase; beta-lactamase class C-like protein 3474685 4605168 Sama_2921 Shewanella amazonensis SB2B beta-lactamase class C-like protein YP_928793.1 3473330 R 326297 CDS YP_928794.1 119776054 4605169 complement(3474807..3476954) 1 NC_008700.1 KEGG: tma:TM1189 hypothetical protein; P-loop ATPase-like protein 3476954 4605169 Sama_2922 Shewanella amazonensis SB2B P-loop ATPase-like protein YP_928794.1 3474807 R 326297 CDS YP_928795.1 119776055 4605170 complement(3477626..3478192) 1 NC_008700.1 KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 3478192 4605170 Sama_2923 Shewanella amazonensis SB2B hypoxanthine-guanine phosphoribosyltransferase YP_928795.1 3477626 R 326297 CDS YP_928796.1 119776056 4605171 complement(3478408..3480177) 1 NC_008700.1 KEGG: son:SO0806 alkaline phosphatase, putative; alkaline phosphatase 3480177 4605171 Sama_2924 Shewanella amazonensis SB2B alkaline phosphatase YP_928796.1 3478408 R 326297 CDS YP_928797.1 119776057 4605172 3480377..3480796 1 NC_008700.1 KEGG: son:SO0805 CBS domain protein; hypothetical protein 3480796 4605172 Sama_2925 Shewanella amazonensis SB2B hypothetical protein YP_928797.1 3480377 D 326297 CDS YP_928798.1 119776058 4605173 complement(3480845..3481534) 1 NC_008700.1 KEGG: son:SO1048 hypothetical protein; hypothetical protein 3481534 4605173 Sama_2926 Shewanella amazonensis SB2B hypothetical protein YP_928798.1 3480845 R 326297 CDS YP_928799.1 119776059 4605174 complement(3481534..3481965) 1 NC_008700.1 KEGG: son:SO1047 holin-like protein; holin-like protein 3481965 4605174 Sama_2927 Shewanella amazonensis SB2B holin-like protein YP_928799.1 3481534 R 326297 CDS YP_928800.1 119776060 4605175 3482069..3482959 1 NC_008700.1 KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3482959 4605175 Sama_2928 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_928800.1 3482069 D 326297 CDS YP_928801.1 119776061 4605176 complement(3483023..3483838) 1 NC_008700.1 KEGG: son:SO1045 hypothetical protein; hypothetical protein 3483838 4605176 Sama_2929 Shewanella amazonensis SB2B hypothetical protein YP_928801.1 3483023 R 326297 CDS YP_928802.1 119776062 4605177 complement(3483858..3484598) 1 NC_008700.1 KEGG: eba:ebA6078 hypothetical protein; hypothetical protein 3484598 4605177 Sama_2930 Shewanella amazonensis SB2B hypothetical protein YP_928802.1 3483858 R 326297 CDS YP_928803.1 119776063 4605178 complement(3484599..3484961) 1 NC_008700.1 KEGG: pae:PA1029 hypothetical protein; hypothetical protein 3484961 4605178 Sama_2931 Shewanella amazonensis SB2B hypothetical protein YP_928803.1 3484599 R 326297 CDS YP_928804.1 119776064 4605179 3485204..3485857 1 NC_008700.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3485857 4605179 Sama_2932 Shewanella amazonensis SB2B dihydropteridine reductase YP_928804.1 3485204 D 326297 CDS YP_928805.1 119776065 4605180 3485997..3486647 1 NC_008700.1 KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein; heat shock protein DnaJ-like protein 3486647 4605180 Sama_2933 Shewanella amazonensis SB2B heat shock protein DnaJ-like protein YP_928805.1 3485997 D 326297 CDS YP_928806.1 119776066 4605181 3486807..3487553 1 NC_008700.1 KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 3487553 4605181 Sama_2934 Shewanella amazonensis SB2B DsbA family thiol:disulfide interchange protein YP_928806.1 3486807 D 326297 CDS YP_928807.1 119776067 4605182 3487928..3489265 1 NC_008700.1 KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter family protein 3489265 4605182 Sama_2935 Shewanella amazonensis SB2B Na+/H+ antiporter family protein YP_928807.1 3487928 D 326297 CDS YP_928808.1 119776068 4605183 3489296..3489988 1 NC_008700.1 KEGG: son:SO1086 hypothetical protein; hypothetical protein 3489988 4605183 Sama_2936 Shewanella amazonensis SB2B hypothetical protein YP_928808.1 3489296 D 326297 CDS YP_928809.1 119776069 4605184 3489985..3490749 1 NC_008700.1 KEGG: sfr:Sfri_0572 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 3490749 4605184 Sama_2937 Shewanella amazonensis SB2B pseudouridine synthase, Rsu YP_928809.1 3489985 D 326297 CDS YP_928810.1 119776070 4605185 complement(3491171..3493387) 1 NC_008700.1 KEGG: son:SO1075 hypothetical protein; hypothetical protein 3493387 4605185 Sama_2938 Shewanella amazonensis SB2B hypothetical protein YP_928810.1 3491171 R 326297 CDS YP_928811.1 119776071 4605186 complement(3493528..3494715) 1 NC_008700.1 KEGG: son:SO1074 tyrosine-specific transport protein, putative; tyrosine-specific transport protein 3494715 4605186 Sama_2939 Shewanella amazonensis SB2B tyrosine-specific transport protein YP_928811.1 3493528 R 326297 CDS YP_928812.1 119776072 4605187 3495193..3495753 1 NC_008700.1 KEGG: son:SO1071 hypothetical protein; hypothetical protein 3495753 4605187 Sama_2940 Shewanella amazonensis SB2B hypothetical protein YP_928812.1 3495193 D 326297 CDS YP_928813.1 119776073 4605188 complement(3495842..3497308) 1 NC_008700.1 KEGG: son:SO1070 catalase; catalase 3497308 4605188 Sama_2941 Shewanella amazonensis SB2B catalase YP_928813.1 3495842 R 326297 CDS YP_928814.1 119776074 4605189 complement(3497573..3498019) 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 3498019 4605189 Sama_2942 Shewanella amazonensis SB2B IS1004 transposase YP_928814.1 3497573 R 326297 CDS YP_928815.1 119776075 4605190 complement(3498182..3498421) 1 NC_008700.1 KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 3498421 4605190 Sama_2943 Shewanella amazonensis SB2B hypothetical protein YP_928815.1 3498182 R 326297 CDS YP_928816.1 119776076 4605191 complement(3498463..3498900) 1 NC_008700.1 KEGG: son:SO1068 hypothetical protein; hypothetical protein 3498900 4605191 Sama_2944 Shewanella amazonensis SB2B hypothetical protein YP_928816.1 3498463 R 326297 CDS YP_928817.1 119776077 4605192 complement(3499049..3501646) 1 NC_008700.1 KEGG: son:SO1066 extracellular nuclease; extracellular nuclease 3501646 4605192 Sama_2945 Shewanella amazonensis SB2B extracellular nuclease YP_928817.1 3499049 R 326297 CDS YP_928818.1 119776078 4605193 3502428..3502862 1 NC_008700.1 KEGG: son:SO0866 minor curlin subunit CsgB, putative; minor curlin subunit CsgB 3502862 4605193 Sama_2946 Shewanella amazonensis SB2B minor curlin subunit CsgB YP_928818.1 3502428 D 326297 CDS YP_928819.1 119776079 4605194 3502876..3504378 1 NC_008700.1 KEGG: son:SO0865 hypothetical protein; hypothetical protein 3504378 4605194 Sama_2947 Shewanella amazonensis SB2B hypothetical protein YP_928819.1 3502876 D 326297 CDS YP_928820.1 119776080 4605195 complement(3504494..3505159) 1 NC_008700.1 KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; response regulator receiver protein 3505159 4605195 Sama_2948 Shewanella amazonensis SB2B response regulator receiver protein YP_928820.1 3504494 R 326297 CDS YP_928821.1 119776081 4605196 3505670..3506899 1 NC_008700.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3506899 4605196 Sama_2949 Shewanella amazonensis SB2B D-3-phosphoglycerate dehydrogenase YP_928821.1 3505670 D 326297 CDS YP_928822.1 119776082 4605197 3507032..3507997 1 NC_008700.1 KEGG: son:SO0861 hypothetical protein; hypothetical protein 3507997 4605197 Sama_2950 Shewanella amazonensis SB2B hypothetical protein YP_928822.1 3507032 D 326297 CDS YP_928823.1 119776083 4605198 complement(3508091..3509113) 1 NC_008700.1 KEGG: son:SO0860 response regulator; response regulator receiver protein 3509113 4605198 Sama_2951 Shewanella amazonensis SB2B response regulator receiver protein YP_928823.1 3508091 R 326297 CDS YP_928824.1 119776084 4605199 complement(3509199..3514490) 1 NC_008700.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; sensory box histidine kinase/response regulator 3514490 4605199 Sama_2952 Shewanella amazonensis SB2B sensory box histidine kinase/response regulator YP_928824.1 3509199 R 326297 CDS YP_928825.1 119776085 4605200 complement(3514745..3516139) 1 NC_008700.1 KEGG: son:SO0858 sodium:alanine symporter family protein; sodium:alanine symporter family protein 3516139 4605200 Sama_2953 Shewanella amazonensis SB2B sodium:alanine symporter family protein YP_928825.1 3514745 R 326297 CDS YP_928826.1 119776086 4605201 3516822..3517370 1 NC_008700.1 KEGG: ppr:PBPRA0130 hypothetical protein; hypothetical protein 3517370 4605201 Sama_2954 Shewanella amazonensis SB2B hypothetical protein YP_928826.1 3516822 D 326297 CDS YP_928827.1 119776087 4605202 3517550..3518302 1 NC_008700.1 KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3518302 4605202 Sama_2955 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_928827.1 3517550 D 326297 CDS YP_928828.1 119776088 4605203 3518305..3520923 1 NC_008700.1 KEGG: son:SO0856 putative ABC transport system permease protein; putative ABC transport system permease 3520923 4605203 Sama_2956 Shewanella amazonensis SB2B putative ABC transport system permease YP_928828.1 3518305 D 326297 CDS YP_928829.1 119776089 4605204 3520925..3522127 1 NC_008700.1 KEGG: son:SO0855 hypothetical protein; hypothetical protein 3522127 4605204 Sama_2957 Shewanella amazonensis SB2B hypothetical protein YP_928829.1 3520925 D 326297 CDS YP_928830.1 119776090 4605205 3522321..3522686 1 NC_008700.1 KEGG: son:SO3699.1 hypothetical protein; hypothetical protein 3522686 4605205 Sama_2958 Shewanella amazonensis SB2B hypothetical protein YP_928830.1 3522321 D 326297 CDS YP_928831.1 119776091 4605206 3523469..3524821 1 NC_008700.1 KEGG: ecs:ECs5257 hypothetical protein; hypothetical protein 3524821 4605206 Sama_2959 Shewanella amazonensis SB2B hypothetical protein YP_928831.1 3523469 D 326297 CDS YP_928832.1 119776092 4605207 3524850..3525728 1 NC_008700.1 KEGG: osa:P0694A04.9 putative myosin heavy chain-like protein; hypothetical protein 3525728 4605207 Sama_2960 Shewanella amazonensis SB2B hypothetical protein YP_928832.1 3524850 D 326297 CDS YP_928833.1 119776093 4605208 complement(3525771..3526076) 1 NC_008700.1 KEGG: cps:CPS_2742 ISCps7, transposase; hypothetical protein 3526076 4605208 Sama_2961 Shewanella amazonensis SB2B hypothetical protein YP_928833.1 3525771 R 326297 CDS YP_928834.1 119776094 4605209 complement(3526512..3526721) 1 NC_008700.1 KEGG: vvy:VVA0678 hypothetical protein; hypothetical protein 3526721 4605209 Sama_2962 Shewanella amazonensis SB2B hypothetical protein YP_928834.1 3526512 R 326297 CDS YP_928835.1 119776095 4605210 complement(3527153..3527365) 1 NC_008700.1 KEGG: sdn:Sden_0927 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein 3527365 4605210 Sama_2963 Shewanella amazonensis SB2B cold-shock DNA-binding domain-containing protein YP_928835.1 3527153 R 326297 CDS YP_928836.1 119776096 4605211 complement(3527800..3528936) 1 NC_008700.1 KEGG: spn:SP1772 cell wall surface anchor family protein; hypothetical protein 3528936 4605211 Sama_2964 Shewanella amazonensis SB2B hypothetical protein YP_928836.1 3527800 R 326297 CDS YP_928837.1 119776097 4605212 complement(3529208..3530398) 1 NC_008700.1 KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 3530398 4605212 Sama_2965 Shewanella amazonensis SB2B putative SAM-dependent methyltransferase YP_928837.1 3529208 R 326297 CDS YP_928838.1 119776098 4605213 complement(3530560..3531744) 1 NC_008700.1 KEGG: son:SO1148 hypothetical protein; hypothetical protein 3531744 4605213 Sama_2966 Shewanella amazonensis SB2B hypothetical protein YP_928838.1 3530560 R 326297 CDS YP_928839.1 119776099 4605214 3531903..3533924 1 NC_008700.1 KEGG: hch:HCH_06920 hypothetical protein; hypothetical protein 3533924 4605214 Sama_2967 Shewanella amazonensis SB2B hypothetical protein YP_928839.1 3531903 D 326297 CDS YP_928840.1 119776100 4605215 3533934..3535064 1 NC_008700.1 hypothetical protein 3535064 4605215 Sama_2968 Shewanella amazonensis SB2B hypothetical protein YP_928840.1 3533934 D 326297 CDS YP_928841.1 119776101 4605216 complement(3535165..3535839) 1 NC_008700.1 KEGG: sdn:Sden_0863 nitroreductase; nitroreductase 3535839 4605216 Sama_2969 Shewanella amazonensis SB2B nitroreductase YP_928841.1 3535165 R 326297 CDS YP_928842.1 119776102 4605217 3535999..3537672 1 NC_008700.1 KEGG: tbd:Tbd_2693 putative diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 3537672 4605217 Sama_2970 Shewanella amazonensis SB2B diguanylate cyclase YP_928842.1 3535999 D 326297 CDS YP_928843.1 119776103 4605218 complement(3537747..3540086) 1 NC_008700.1 KEGG: son:SO0633 penicillin-binding protein 1B; peptidoglycan glycosyltransferase 3540086 4605218 Sama_2971 Shewanella amazonensis SB2B peptidoglycan glycosyltransferase YP_928843.1 3537747 R 326297 CDS YP_928844.1 119776104 4605219 complement(3540099..3542615) 1 NC_008700.1 KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 3542615 4605219 Sama_2972 Shewanella amazonensis SB2B ATP-dependent helicase HrpB YP_928844.1 3540099 R 326297 CDS YP_928845.1 119776105 4605220 complement(3542699..3544903) 1 NC_008700.1 KEGG: son:SO0628 GGDEF domain protein protein; diguanylate cyclase 3544903 4605220 Sama_2973 Shewanella amazonensis SB2B diguanylate cyclase YP_928845.1 3542699 R 326297 CDS YP_928846.1 119776106 4605221 3544997..3545524 1 NC_008700.1 KEGG: son:SO0627 putative 2'-5' RNA ligase; putative 2'-5' RNA ligase 3545524 4605221 Sama_2974 Shewanella amazonensis SB2B putative 2'-5' RNA ligase YP_928846.1 3544997 D 326297 CDS YP_928847.1 119776107 4605222 complement(3545529..3546023) 1 NC_008700.1 KEGG: son:SO0877 acetyltransferase, GNAT family; acetyltransferase 3546023 4605222 Sama_2975 Shewanella amazonensis SB2B acetyltransferase YP_928847.1 3545529 R 326297 CDS YP_928848.1 119776108 4605223 complement(3546138..3547355) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3547355 4605223 Sama_2976 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit F YP_928848.1 3546138 R 326297 CDS YP_928849.1 119776109 4605224 complement(3547369..3547977) 1 NC_008700.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3547977 4605224 Sama_2977 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit E YP_928849.1 3547369 R 326297 CDS YP_928850.1 119776110 4605225 complement(3547988..3548614) 1 NC_008700.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3548614 4605225 Sama_2978 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit D YP_928850.1 3547988 R 326297 CDS YP_928851.1 119776111 4605226 complement(3548616..3549380) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3549380 4605226 Sama_2979 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit C YP_928851.1 3548616 R 326297 CDS YP_928852.1 119776112 4605227 complement(3549370..3550584) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3550584 4605227 Sama_2980 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit B YP_928852.1 3549370 R 326297 CDS YP_928853.1 119776113 4605228 complement(3550584..3551951) 1 NC_008700.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3551951 4605228 Sama_2981 Shewanella amazonensis SB2B Na(+)-translocating NADH-quinone reductase subunit A YP_928853.1 3550584 R 326297 CDS YP_928854.1 119776114 4605229 3553114..3553383 1 NC_008700.1 KEGG: son:SO0849 napD protein; napD protein 3553383 4605229 Sama_2982 Shewanella amazonensis SB2B napD protein YP_928854.1 3553114 D 326297 CDS YP_928855.1 119776115 4605230 3553380..3555863 1 NC_008700.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3555863 4605230 Sama_2983 Shewanella amazonensis SB2B nitrate reductase catalytic subunit YP_928855.1 3553380 D 326297 CDS YP_928856.1 119776116 4605231 3555904..3556629 1 NC_008700.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 3556629 napG 4605231 napG Shewanella amazonensis SB2B quinol dehydrogenase periplasmic component YP_928856.1 3555904 D 326297 CDS YP_928857.1 119776117 4605232 3556626..3557537 1 NC_008700.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 3557537 napH 4605232 napH Shewanella amazonensis SB2B quinol dehydrogenase membrane component YP_928857.1 3556626 D 326297 CDS YP_928858.1 119776118 4605233 3557534..3557965 1 NC_008700.1 KEGG: son:SO0845 cytochrome c-type protein NapB; cytochrome c-type protein NapB 3557965 4605233 Sama_2986 Shewanella amazonensis SB2B cytochrome c-type protein NapB YP_928858.1 3557534 D 326297 CDS YP_928859.1 119776119 4605234 complement(3558041..3558940) 1 NC_008700.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3558940 4605234 Sama_2987 Shewanella amazonensis SB2B chromosome replication initiation inhibitor protein YP_928859.1 3558041 R 326297 CDS YP_928860.1 119776120 4605235 3559083..3559709 1 NC_008700.1 KEGG: son:SO2865 L-lysine exporter, putative; L-lysine exporter 3559709 4605235 Sama_2988 Shewanella amazonensis SB2B L-lysine exporter YP_928860.1 3559083 D 326297 CDS YP_928861.1 119776121 4605236 3559985..3561718 1 NC_008700.1 KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain protein); response regulator receiver protein 3561718 4605236 Sama_2989 Shewanella amazonensis SB2B response regulator receiver protein YP_928861.1 3559985 D 326297 CDS YP_928862.1 119776122 4605237 3562175..3564217 1 NC_008700.1 KEGG: son:SO3140.2 hypothetical protein; hypothetical protein 3564217 4605237 Sama_2990 Shewanella amazonensis SB2B hypothetical protein YP_928862.1 3562175 D 326297 CDS YP_928863.1 119776123 4605238 3564615..3564992 1 NC_008700.1 KEGG: sde:Sde_1353 TonB-dependent receptor; TonB-dependent receptor 3564992 4605238 Sama_2991 Shewanella amazonensis SB2B TonB-dependent receptor YP_928863.1 3564615 D 326297 CDS YP_928864.1 119776124 4605239 complement(3565041..3566153) 1 NC_008700.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3566153 mltA 4605239 mltA Shewanella amazonensis SB2B murein transglycosylase A YP_928864.1 3565041 R 326297 CDS YP_928865.1 119776125 4605240 3566298..3567245 1 NC_008700.1 KEGG: cvi:CV3218 probable translation initiation protein, SUA5/YciO/YrdC family; SUA5/YciO/YrdC family translation initiation protein 3567245 4605240 Sama_2993 Shewanella amazonensis SB2B SUA5/YciO/YrdC family translation initiation protein YP_928865.1 3566298 D 326297 CDS YP_928866.1 119776126 4605241 complement(3567330..3568184) 1 NC_008700.1 KEGG: son:SO0895 pirin family protein; pirin family protein 3568184 4605241 Sama_2994 Shewanella amazonensis SB2B pirin family protein YP_928866.1 3567330 R 326297 CDS YP_928867.1 119776127 4605242 complement(3568280..3568477) 1 NC_008700.1 KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein 3568477 4605242 Sama_2995 Shewanella amazonensis SB2B hypothetical protein YP_928867.1 3568280 R 326297 CDS YP_928868.1 119776128 4605243 3568613..3570520 1 NC_008700.1 KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3570520 4605243 Sama_2996 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_928868.1 3568613 D 326297 CDS YP_928869.1 119776129 4605244 3570577..3571023 1 NC_008700.1 KEGG: sdn:Sden_3179 hypothetical protein; hypothetical protein 3571023 4605244 Sama_2997 Shewanella amazonensis SB2B hypothetical protein YP_928869.1 3570577 D 326297 CDS YP_928870.1 119776130 4605245 complement(3571165..3572856) 1 NC_008700.1 KEGG: son:SO0882 oxidoreductase, GMC family; GMC family oxidoreductase 3572856 4605245 Sama_2998 Shewanella amazonensis SB2B GMC family oxidoreductase YP_928870.1 3571165 R 326297 CDS YP_928871.1 119776131 4605246 complement(3572866..3573378) 1 NC_008700.1 KEGG: son:SO0881 hypothetical protein; hypothetical protein 3573378 4605246 Sama_2999 Shewanella amazonensis SB2B hypothetical protein YP_928871.1 3572866 R 326297 CDS YP_928872.1 119776132 4605247 3573552..3574529 1 NC_008700.1 KEGG: son:SO0880 hypothetical protein; hypothetical protein 3574529 4605247 Sama_3000 Shewanella amazonensis SB2B hypothetical protein YP_928872.1 3573552 D 326297 CDS YP_928873.1 119776133 4605248 3574539..3574790 1 NC_008700.1 KEGG: sdn:Sden_3187 protein of unknown function UPF0270; hypothetical protein 3574790 4605248 Sama_3001 Shewanella amazonensis SB2B hypothetical protein YP_928873.1 3574539 D 326297 CDS YP_928874.1 119776134 4605249 3574880..3575767 1 NC_008700.1 KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 3575767 4605249 Sama_3002 Shewanella amazonensis SB2B phosphoribulokinase YP_928874.1 3574880 D 326297 CDS YP_928875.1 119776135 4605250 complement(3576053..3576829) 1 NC_008700.1 KEGG: son:SO0625 hypothetical protein; hypothetical protein 3576829 4605250 Sama_3003 Shewanella amazonensis SB2B hypothetical protein YP_928875.1 3576053 R 326297 CDS YP_928876.1 119776136 4605251 3577223..3577858 1 NC_008700.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3577858 4605251 Sama_3004 Shewanella amazonensis SB2B cAMP-regulatory protein YP_928876.1 3577223 D 326297 CDS YP_928877.1 119776137 4605252 3577943..3578287 1 NC_008700.1 KEGG: son:SO0623 hypothetical protein; hypothetical protein 3578287 4605252 Sama_3005 Shewanella amazonensis SB2B hypothetical protein YP_928877.1 3577943 D 326297 CDS YP_928878.1 119776138 4605253 3578268..3578942 1 NC_008700.1 KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; response regulator receiver protein 3578942 4605253 Sama_3006 Shewanella amazonensis SB2B response regulator receiver protein YP_928878.1 3578268 D 326297 CDS YP_928879.1 119776139 4605254 3578939..3580276 1 NC_008700.1 KEGG: son:SO0621 sensor histidine kinase; sensor histidine kinase 3580276 4605254 Sama_3007 Shewanella amazonensis SB2B sensor histidine kinase YP_928879.1 3578939 D 326297 CDS YP_928880.1 119776140 4605255 complement(3580353..3581150) 1 NC_008700.1 KEGG: son:SO0620 hypothetical protein; hypothetical protein 3581150 4605255 Sama_3008 Shewanella amazonensis SB2B hypothetical protein YP_928880.1 3580353 R 326297 CDS YP_928881.1 119776141 4605256 complement(3581295..3582755) 1 NC_008700.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 3582755 astD 4605256 astD Shewanella amazonensis SB2B succinylglutamic semialdehyde dehydrogenase YP_928881.1 3581295 R 326297 CDS YP_928882.1 119776142 4605257 complement(3582765..3583784) 1 NC_008700.1 KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase 3583784 4605257 Sama_3010 Shewanella amazonensis SB2B arginine N-succinyltransferase YP_928882.1 3582765 R 326297 CDS YP_928883.1 119776143 4605258 complement(3583948..3585162) 1 NC_008700.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3585162 argD 4605258 argD Shewanella amazonensis SB2B bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_928883.1 3583948 R 326297 CDS YP_928884.1 119776144 4605259 complement(3585475..3586386) 1 NC_008700.1 KEGG: son:SO0616 esterase, putative; esterase 3586386 4605259 Sama_3012 Shewanella amazonensis SB2B esterase YP_928884.1 3585475 R 326297 CDS YP_928885.1 119776145 4605260 complement(3586447..3587643) 1 NC_008700.1 KEGG: son:SO0615 hypothetical protein; hypothetical protein 3587643 4605260 Sama_3013 Shewanella amazonensis SB2B hypothetical protein YP_928885.1 3586447 R 326297 CDS YP_928886.1 119776146 4605261 complement(3587752..3590226) 1 NC_008700.1 KEGG: son:SO0614 dipeptidyl peptidase IV, putative; dipeptidyl peptidase IV 3590226 4605261 Sama_3014 Shewanella amazonensis SB2B dipeptidyl peptidase IV YP_928886.1 3587752 R 326297 CDS YP_928887.1 119776147 4605262 complement(3590359..3591009) 1 NC_008700.1 KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; para-aminobenzoate synthase glutamine amidotransferase, component II 3591009 4605262 Sama_3015 Shewanella amazonensis SB2B para-aminobenzoate synthase glutamine amidotransferase, component II YP_928887.1 3590359 R 326297 CDS YP_928888.1 119776148 4605263 3591042..3592199 1 NC_008700.1 KEGG: fra:Francci3_2523 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 3592199 4605263 Sama_3016 Shewanella amazonensis SB2B diguanylate cyclase YP_928888.1 3591042 D 326297 CDS YP_928889.1 119776149 4605264 complement(3592245..3592703) 1 NC_008700.1 KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor 3592703 4605264 Sama_3017 Shewanella amazonensis SB2B ClpXP protease specificity-enhancing factor YP_928889.1 3592245 R 326297 CDS YP_928890.1 119776150 4605265 complement(3592703..3593332) 1 NC_008700.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3593332 sspA 4605265 sspA Shewanella amazonensis SB2B stringent starvation protein A YP_928890.1 3592703 R 326297 CDS YP_928891.1 119776151 4605266 complement(3593427..3594125) 1 NC_008700.1 KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; ubiquinol-cytochrome c reductase cytochrome c1 subunit 3594125 4605266 Sama_3019 Shewanella amazonensis SB2B ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_928891.1 3593427 R 326297 CDS YP_928892.1 119776152 4605267 complement(3594125..3595339) 1 NC_008700.1 KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; ubiquinol-cytochrome c reductase, cytochrome b 3595339 4605267 Sama_3020 Shewanella amazonensis SB2B ubiquinol-cytochrome c reductase, cytochrome b YP_928892.1 3594125 R 326297 CDS YP_928893.1 119776153 4605268 complement(3595339..3595929) 1 NC_008700.1 KEGG: sdn:Sden_3201 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol--cytochrome-c reductase 3595929 4605268 Sama_3021 Shewanella amazonensis SB2B ubiquinol--cytochrome-c reductase YP_928893.1 3595339 R 326297 CDS YP_928894.1 119776154 4605269 complement(3596256..3597182) 1 NC_008700.1 KEGG: son:SO0606 hflC protein; hflC protein 3597182 4605269 Sama_3022 Shewanella amazonensis SB2B hflC protein YP_928894.1 3596256 R 326297 CDS YP_928895.1 119776155 4605270 complement(3597186..3598319) 1 NC_008700.1 KEGG: son:SO0605 hflK protein; hflK protein 3598319 4605270 Sama_3023 Shewanella amazonensis SB2B hflK protein YP_928895.1 3597186 R 326297 CDS YP_928896.1 119776156 4605271 complement(3598351..3599658) 1 NC_008700.1 KEGG: son:SO0604 GTP-binding protein HflX; GTP-binding protein HflX 3599658 4605271 Sama_3024 Shewanella amazonensis SB2B GTP-binding protein HflX YP_928896.1 3598351 R 326297 CDS YP_928897.1 119776157 4605272 complement(3599691..3599966) 1 NC_008700.1 KEGG: son:SO0603 host factor-I protein; host factor-I protein 3599966 4605272 Sama_3025 Shewanella amazonensis SB2B host factor-I protein YP_928897.1 3599691 R 326297 CDS YP_928898.1 119776158 4605273 complement(3600050..3600970) 1 NC_008700.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3600970 miaA 4605273 miaA Shewanella amazonensis SB2B tRNA delta(2)-isopentenylpyrophosphate transferase YP_928898.1 3600050 R 326297 CDS YP_928899.1 119776159 4605274 complement(3600972..3602924) 1 NC_008700.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3602924 mutL 4605274 mutL Shewanella amazonensis SB2B DNA mismatch repair protein YP_928899.1 3600972 R 326297 CDS YP_928900.1 119776160 4605275 complement(3602939..3604246) 1 NC_008700.1 KEGG: sdn:Sden_3208 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3604246 4605275 Sama_3028 Shewanella amazonensis SB2B N-acetylmuramoyl-L-alanine amidase YP_928900.1 3602939 R 326297 CDS YP_928901.1 119776161 4605276 complement(3604243..3604704) 1 NC_008700.1 KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 3604704 4605276 Sama_3029 Shewanella amazonensis SB2B hypothetical protein YP_928901.1 3604243 R 326297 CDS YP_928902.1 119776162 4605277 complement(3604771..3606261) 1 NC_008700.1 KEGG: son:SO0598 YjeF protein; YjeF protein 3606261 4605277 Sama_3030 Shewanella amazonensis SB2B YjeF protein YP_928902.1 3604771 R 326297 CDS YP_928903.1 119776163 4605278 complement(3606713..3607168) 1 NC_008700.1 KEGG: son:SO0595 hypothetical protein; hypothetical protein 3607168 4605278 Sama_3031 Shewanella amazonensis SB2B hypothetical protein YP_928903.1 3606713 R 326297 CDS YP_928904.1 119776164 4606022 complement(3608130..3608675) 1 NC_008700.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3608675 4606022 Sama_3032 Shewanella amazonensis SB2B oligoribonuclease YP_928904.1 3608130 R 326297 CDS YP_928905.1 119776165 4605280 3608786..3609841 1 NC_008700.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3609841 4605280 Sama_3033 Shewanella amazonensis SB2B ribosome-associated GTPase YP_928905.1 3608786 D 326297 CDS YP_928906.1 119776166 4605281 3609878..3610741 1 NC_008700.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3610741 psd 4605281 psd Shewanella amazonensis SB2B phosphatidylserine decarboxylase YP_928906.1 3609878 D 326297 CDS YP_928907.1 119776167 4605282 3610741..3611622 1 NC_008700.1 KEGG: cps:CPS_3514 membrane protein; membrane protein 3611622 4605282 Sama_3035 Shewanella amazonensis SB2B membrane protein YP_928907.1 3610741 D 326297 CDS YP_928908.1 119776168 4605283 3611651..3614893 1 NC_008700.1 KEGG: son:SO0588 transporter, putative; transporter 3614893 4605283 Sama_3036 Shewanella amazonensis SB2B transporter YP_928908.1 3611651 D 326297 CDS YP_928909.1 119776169 4605284 3614908..3615630 1 NC_008700.1 KEGG: sdn:Sden_3215 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3615630 4605284 Sama_3037 Shewanella amazonensis SB2B glycerophosphoryl diester phosphodiesterase YP_928909.1 3614908 D 326297 CDS YP_928910.1 119776170 4605285 complement(3615661..3615993) 1 NC_008700.1 KEGG: vfi:VF1559 hypothetical protein; hypothetical protein 3615993 4605285 Sama_3038 Shewanella amazonensis SB2B hypothetical protein YP_928910.1 3615661 R 326297 CDS YP_928911.1 119776171 4605286 3616048..3616974 1 NC_008700.1 KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase family protein 3616974 4605286 Sama_3039 Shewanella amazonensis SB2B D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_928911.1 3616048 D 326297 CDS YP_928912.1 119776172 4605287 3617252..3617443 1 NC_008700.1 KEGG: son:SO0583 bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin 3617443 4605287 Sama_3040 Shewanella amazonensis SB2B bacterioferritin-associated ferredoxin YP_928912.1 3617252 D 326297 CDS YP_928913.1 119776173 4605288 complement(3617593..3619863) 1 NC_008700.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3619863 4605288 Sama_3041 Shewanella amazonensis SB2B DNA topoisomerase IV subunit A YP_928913.1 3617593 R 326297 CDS YP_928914.1 119776174 4605289 complement(3619860..3621035) 1 NC_008700.1 KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 3621035 4605289 Sama_3042 Shewanella amazonensis SB2B L-sorbosone dehydrogenase YP_928914.1 3619860 R 326297 CDS YP_928915.1 119776175 4605290 complement(3621035..3622921) 1 NC_008700.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3622921 4605290 Sama_3043 Shewanella amazonensis SB2B DNA topoisomerase IV subunit B YP_928915.1 3621035 R 326297 CDS YP_928916.1 119776176 4605291 complement(3622977..3623552) 1 NC_008700.1 KEGG: son:SO3900 hypothetical protein; hypothetical protein 3623552 4605291 Sama_3044 Shewanella amazonensis SB2B hypothetical protein YP_928916.1 3622977 R 326297 CDS YP_928917.1 119776177 4605292 complement(3623581..3624420) 1 NC_008700.1 KEGG: son:SO3901 lacZ expression regulator; lacZ expression regulator 3624420 4605292 Sama_3045 Shewanella amazonensis SB2B lacZ expression regulator YP_928917.1 3623581 R 326297 CDS YP_928918.1 119776178 4605293 complement(3624436..3624855) 1 NC_008700.1 KEGG: son:SO3902 hypothetical protein; hypothetical protein 3624855 4605293 Sama_3046 Shewanella amazonensis SB2B hypothetical protein YP_928918.1 3624436 R 326297 CDS YP_928919.1 119776179 4605294 complement(3624867..3625481) 1 NC_008700.1 KEGG: son:SO3903 ADP-ribose pyrophosphatase; ADP-ribose diphosphatase 3625481 4605294 Sama_3047 Shewanella amazonensis SB2B ADP-ribose diphosphatase YP_928919.1 3624867 R 326297 CDS YP_928920.1 119776180 4605295 3625719..3627017 1 NC_008700.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3627017 tolC 4605295 tolC Shewanella amazonensis SB2B outer membrane channel protein YP_928920.1 3625719 D 326297 CDS YP_928921.1 119776181 4605296 complement(3627076..3627816) 1 NC_008700.1 KEGG: son:SO3905 hypothetical protein; hypothetical protein 3627816 4605296 Sama_3049 Shewanella amazonensis SB2B hypothetical protein YP_928921.1 3627076 R 326297 CDS YP_928922.1 119776182 4605297 complement(3627819..3628790) 1 NC_008700.1 KEGG: son:SO3906 hypothetical protein; hypothetical protein 3628790 4605297 Sama_3050 Shewanella amazonensis SB2B hypothetical protein YP_928922.1 3627819 R 326297 CDS YP_928923.1 119776183 4605298 complement(3628805..3629284) 1 NC_008700.1 KEGG: sfr:Sfri_3335 protein of unknown function DUF461; hypothetical protein 3629284 4605298 Sama_3051 Shewanella amazonensis SB2B hypothetical protein YP_928923.1 3628805 R 326297 CDS YP_928924.1 119776184 4605299 3629316..3630056 1 NC_008700.1 KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein 3630056 4605299 Sama_3052 Shewanella amazonensis SB2B enoyl-CoA hydratase/isomerase family protein YP_928924.1 3629316 D 326297 CDS YP_928925.1 119776185 4605300 complement(3630131..3630328) 1 NC_008700.1 KEGG: son:SO3909 hypothetical protein; hypothetical protein 3630328 4605300 Sama_3053 Shewanella amazonensis SB2B hypothetical protein YP_928925.1 3630131 R 326297 CDS YP_928926.1 119776186 4605301 complement(3630465..3630734) 1 NC_008700.1 hypothetical protein 3630734 4605301 Sama_3054 Shewanella amazonensis SB2B hypothetical protein YP_928926.1 3630465 R 326297 CDS YP_928927.1 119776187 4605302 complement(3630940..3631920) 1 NC_008700.1 KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A 3631920 4605302 Sama_3055 Shewanella amazonensis SB2B tRNA-dihydrouridine synthase A YP_928927.1 3630940 R 326297 CDS YP_928928.1 119776188 4605303 3632112..3632576 1 NC_008700.1 KEGG: son:SO3915 putative chemotaxis protein CheX; putative chemotaxis protein CheX 3632576 4605303 Sama_3056 Shewanella amazonensis SB2B putative chemotaxis protein CheX YP_928928.1 3632112 D 326297 CDS YP_928929.1 119776189 4605304 complement(3632624..3633718) 1 NC_008700.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3633718 alr 4605304 alr Shewanella amazonensis SB2B alanine racemase YP_928929.1 3632624 R 326297 CDS YP_928930.1 119776190 4605305 complement(3633749..3635155) 1 NC_008700.1 KEGG: son:SO3917 replicative DNA helicase; replicative DNA helicase 3635155 4605305 Sama_3058 Shewanella amazonensis SB2B replicative DNA helicase YP_928930.1 3633749 R 326297 CDS YP_928931.1 119776191 4605306 3635277..3637466 1 NC_008700.1 KEGG: son:SO3918 hypothetical protein; hypothetical protein 3637466 4605306 Sama_3059 Shewanella amazonensis SB2B hypothetical protein YP_928931.1 3635277 D 326297 CDS YP_928932.1 119776192 4605307 3637669..3640587 1 NC_008700.1 KEGG: pat:Patl_1148 TonB-dependent receptor, plug; TonB-dependent receptor, plug 3640587 4605307 Sama_3060 Shewanella amazonensis SB2B TonB-dependent receptor, plug YP_928932.1 3637669 D 326297 CDS YP_928933.1 119776193 4605308 complement(3640832..3641281) 1 NC_008700.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3641281 rplI 4605308 rplI Shewanella amazonensis SB2B 50S ribosomal protein L9 YP_928933.1 3640832 R 326297 CDS YP_928934.1 119776194 4605309 complement(3641322..3641549) 1 NC_008700.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3641549 rpsR 4605309 rpsR Shewanella amazonensis SB2B 30S ribosomal protein S18 YP_928934.1 3641322 R 326297 CDS YP_928935.1 119776195 4605310 complement(3641561..3641851) 1 NC_008700.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 3641851 4605310 Sama_3063 Shewanella amazonensis SB2B primosomal replication protein N YP_928935.1 3641561 R 326297 CDS YP_928936.1 119776196 4605311 complement(3641876..3642283) 1 NC_008700.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3642283 rpsF 4605311 rpsF Shewanella amazonensis SB2B 30S ribosomal protein S6 YP_928936.1 3641876 R 326297 CDS YP_928937.1 119776197 4605312 3642507..3643253 1 NC_008700.1 KEGG: son:SO3931 putative salt-induced outer membrane protein; putative salt-induced outer membrane protein 3643253 4605312 Sama_3065 Shewanella amazonensis SB2B putative salt-induced outer membrane protein YP_928937.1 3642507 D 326297 CDS YP_928938.1 119776198 4605313 complement(3643340..3644062) 1 NC_008700.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 3644062 4605313 Sama_3066 Shewanella amazonensis SB2B 23S rRNA (guanosine-2'-O-)-methyltransferase YP_928938.1 3643340 R 326297 CDS YP_928939.1 119776199 4605314 complement(3644081..3646507) 1 NC_008700.1 KEGG: son:SO3935 ribonuclease R; exoribonuclease II 3646507 4605314 Sama_3067 Shewanella amazonensis SB2B exoribonuclease II YP_928939.1 3644081 R 326297 CDS YP_928940.1 119776200 4605315 complement(3646547..3647161) 1 NC_008700.1 KEGG: son:SO3936 sodium-type flagellar protein MotX; sodium-type flagellar protein MotX 3647161 4605315 Sama_3068 Shewanella amazonensis SB2B sodium-type flagellar protein MotX YP_928940.1 3646547 R 326297 CDS YP_928941.1 119776201 4605316 complement(3647279..3648574) 1 NC_008700.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3648574 4605316 Sama_3069 Shewanella amazonensis SB2B adenylosuccinate synthetase YP_928941.1 3647279 R 326297 CDS YP_928942.1 119776202 4605317 complement(3648923..3649315) 1 NC_008700.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3649315 rpsI 4605317 rpsI Shewanella amazonensis SB2B 30S ribosomal protein S9 YP_928942.1 3648923 R 326297 CDS YP_928943.1 119776203 4605318 complement(3649330..3649758) 1 NC_008700.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3649758 rplM 4605318 rplM Shewanella amazonensis SB2B 50S ribosomal protein L13 YP_928943.1 3649330 R 326297 CDS YP_928944.1 119776204 4605319 complement(3650039..3651148) 1 NC_008700.1 KEGG: son:SO3941 hypothetical protein; hypothetical protein 3651148 4605319 Sama_3072 Shewanella amazonensis SB2B hypothetical protein YP_928944.1 3650039 R 326297 CDS YP_928945.1 119776205 4605320 3651391..3652740 1 NC_008700.1 KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; serine protease 3652740 4605320 Sama_3073 Shewanella amazonensis SB2B serine protease YP_928945.1 3651391 D 326297 CDS YP_928946.1 119776206 4605321 3652836..3653906 1 NC_008700.1 KEGG: son:SO3943 protease DegS; protease DegS 3653906 4605321 Sama_3074 Shewanella amazonensis SB2B protease DegS YP_928946.1 3652836 D 326297 CDS YP_928947.1 119776207 4605322 complement(3654274..3655530) 1 NC_008700.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3655530 4605322 Sama_3075 Shewanella amazonensis SB2B UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_928947.1 3654274 R 326297 CDS YP_928948.1 119776208 4605323 complement(3655545..3655802) 1 NC_008700.1 KEGG: sdn:Sden_0501 BolA-like protein; BolA-like protein 3655802 4605323 Sama_3076 Shewanella amazonensis SB2B BolA-like protein YP_928948.1 3655545 R 326297 CDS YP_928949.1 119776209 4605324 complement(3655826..3656116) 1 NC_008700.1 KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 3656116 4605324 Sama_3077 Shewanella amazonensis SB2B SpoIIAA family protein YP_928949.1 3655826 R 326297 CDS YP_928950.1 119776210 4605325 complement(3656113..3656751) 1 NC_008700.1 KEGG: son:SO3951 hypothetical protein; hypothetical protein 3656751 4605325 Sama_3078 Shewanella amazonensis SB2B hypothetical protein YP_928950.1 3656113 R 326297 CDS YP_928951.1 119776211 4605326 complement(3656766..3657236) 1 NC_008700.1 KEGG: son:SO3952 mce-related protein; mce-like protein 3657236 4605326 Sama_3079 Shewanella amazonensis SB2B mce-like protein YP_928951.1 3656766 R 326297 CDS YP_928952.1 119776212 4605327 complement(3657277..3658059) 1 NC_008700.1 KEGG: son:SO3953 putative membrane protein; hypothetical protein 3658059 4605327 Sama_3080 Shewanella amazonensis SB2B hypothetical protein YP_928952.1 3657277 R 326297 CDS YP_928953.1 119776213 4605328 complement(3658046..3658858) 1 NC_008700.1 KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter ATP-binding protein 3658858 4605328 Sama_3081 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_928953.1 3658046 R 326297 CDS YP_928954.1 119776214 4605329 3659041..3660003 1 NC_008700.1 KEGG: sdn:Sden_0495 K+-dependent Na+/Ca+ exchanger related-protein; K+-dependent Na+/Ca+ exchanger-like protein 3660003 4605329 Sama_3082 Shewanella amazonensis SB2B K+-dependent Na+/Ca+ exchanger-like protein YP_928954.1 3659041 D 326297 CDS YP_928955.1 119776215 4605330 3660047..3661024 1 NC_008700.1 KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; arabinose-5-phosphate isomerase 3661024 4605330 Sama_3083 Shewanella amazonensis SB2B arabinose-5-phosphate isomerase YP_928955.1 3660047 D 326297 CDS YP_928956.1 119776216 4605331 3661024..3661572 1 NC_008700.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3661572 4605331 Sama_3084 Shewanella amazonensis SB2B 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_928956.1 3661024 D 326297 CDS YP_928957.1 119776217 4605332 3661569..3662126 1 NC_008700.1 KEGG: son:SO3958 hypothetical protein; hypothetical protein 3662126 4605332 Sama_3085 Shewanella amazonensis SB2B hypothetical protein YP_928957.1 3661569 D 326297 CDS YP_928958.1 119776218 4605333 3662113..3662667 1 NC_008700.1 KEGG: sdn:Sden_0491 OstA-like protein; OstA-like protein 3662667 4605333 Sama_3086 Shewanella amazonensis SB2B OstA-like protein YP_928958.1 3662113 D 326297 CDS YP_928959.1 119776219 4605334 3662664..3663395 1 NC_008700.1 KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3663395 4605334 Sama_3087 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_928959.1 3662664 D 326297 CDS YP_928960.1 119776220 4605335 3663507..3664988 1 NC_008700.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3664988 4605335 Sama_3088 Shewanella amazonensis SB2B RNA polymerase factor sigma-54 YP_928960.1 3663507 D 326297 CDS YP_928961.1 119776221 4605336 3665019..3665306 1 NC_008700.1 KEGG: son:SO3962 ribosomal subunit interface protein; ribosomal subunit interface protein 3665306 4605336 Sama_3089 Shewanella amazonensis SB2B ribosomal subunit interface protein YP_928961.1 3665019 D 326297 CDS YP_928962.1 119776222 4605337 3665309..3665752 1 NC_008700.1 KEGG: son:SO3963 nitrogen regulatory IIA protein; nitrogen regulatory IIA protein 3665752 4605337 Sama_3090 Shewanella amazonensis SB2B nitrogen regulatory IIA protein YP_928962.1 3665309 D 326297 CDS YP_928963.1 119776223 4605338 3665749..3666600 1 NC_008700.1 KEGG: son:SO3964 hypothetical protein; hypothetical protein 3666600 4605338 Sama_3091 Shewanella amazonensis SB2B hypothetical protein YP_928963.1 3665749 D 326297 CDS YP_928964.1 119776224 4605339 3666587..3666862 1 NC_008700.1 KEGG: son:SO3965 phosphocarrier protein NPR; phosphocarrier protein NPR 3666862 4605339 Sama_3092 Shewanella amazonensis SB2B phosphocarrier protein NPR YP_928964.1 3666587 D 326297 CDS YP_928965.1 119776225 4605340 3666933..3668297 1 NC_008700.1 KEGG: son:SO3966 magnesium transporter; magnesium transporter 3668297 4605340 Sama_3093 Shewanella amazonensis SB2B magnesium transporter YP_928965.1 3666933 D 326297 CDS YP_928966.1 119776226 4605341 complement(3668286..3668693) 1 NC_008700.1 KEGG: pae:PA0914 hypothetical protein; hypothetical protein 3668693 4605341 Sama_3094 Shewanella amazonensis SB2B hypothetical protein YP_928966.1 3668286 R 326297 CDS YP_928967.1 119776227 4605342 complement(3668794..3669666) 1 NC_008700.1 KEGG: son:SO3967 hypothetical protein; molybdate ABC transporter substrate-binding protein 3669666 4605342 Sama_3095 Shewanella amazonensis SB2B molybdate ABC transporter substrate-binding protein YP_928967.1 3668794 R 326297 CDS YP_928968.1 119776228 4605343 complement(3669787..3670455) 1 NC_008700.1 KEGG: son:SO3969 OmpA family protein; OmpA family protein 3670455 4605343 Sama_3096 Shewanella amazonensis SB2B OmpA family protein YP_928968.1 3669787 R 326297 CDS YP_928969.1 119776229 4605344 3670826..3671077 1 NC_008700.1 KEGG: son:SO3972 hypothetical transposase; putative transposase 3671077 4605344 Sama_3097 Shewanella amazonensis SB2B putative transposase YP_928969.1 3670826 D 326297 CDS YP_928970.1 119776230 4605345 3671396..3673312 1 NC_008700.1 KEGG: vvy:VVA0651 GGDEF family protein; diguanylate cyclase 3673312 4605345 Sama_3098 Shewanella amazonensis SB2B diguanylate cyclase YP_928970.1 3671396 D 326297 CDS YP_928971.1 119776231 4605346 complement(3673331..3674023) 1 NC_008700.1 KEGG: bfs:BF0093 hypothetical protein; hypothetical protein 3674023 4605346 Sama_3099 Shewanella amazonensis SB2B hypothetical protein YP_928971.1 3673331 R 326297 CDS YP_928972.1 119776232 4605347 complement(3674109..3674648) 1 NC_008700.1 KEGG: dar:Daro_3644 hypothetical protein; hypothetical protein 3674648 4605347 Sama_3100 Shewanella amazonensis SB2B hypothetical protein YP_928972.1 3674109 R 326297 CDS YP_928973.1 119776233 4605348 complement(3674804..3675988) 1 NC_008700.1 KEGG: son:SO4332 hypothetical protein; hypothetical protein 3675988 4605348 Sama_3101 Shewanella amazonensis SB2B hypothetical protein YP_928973.1 3674804 R 326297 CDS YP_928974.1 119776234 4605349 complement(3676130..3676897) 1 NC_008700.1 KEGG: ppr:PBPRB1425 hypothetical protein; hypothetical protein 3676897 4605349 Sama_3102 Shewanella amazonensis SB2B hypothetical protein YP_928974.1 3676130 R 326297 CDS YP_928975.1 119776235 4605350 3677222..3677782 1 NC_008700.1 KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 3677782 4605350 Sama_3103 Shewanella amazonensis SB2B cold-shock DNA-binding domain-containing protein YP_928975.1 3677222 D 326297 CDS YP_928976.1 119776236 4605351 complement(3677776..3678066) 1 NC_008700.1 KEGG: son:SO1746 hypothetical protein; hypothetical protein 3678066 4605351 Sama_3104 Shewanella amazonensis SB2B hypothetical protein YP_928976.1 3677776 R 326297 CDS YP_928977.1 119776237 4605352 3678128..3678778 1 NC_008700.1 KEGG: ppr:PBPRB1270 hypothetical protein; hypothetical protein 3678778 4605352 Sama_3105 Shewanella amazonensis SB2B hypothetical protein YP_928977.1 3678128 D 326297 CDS YP_928978.1 119776238 4605353 3678869..3679156 1 NC_008700.1 hypothetical protein 3679156 4605353 Sama_3106 Shewanella amazonensis SB2B hypothetical protein YP_928978.1 3678869 D 326297 CDS YP_928979.1 119776239 4605354 complement(3679164..3679691) 1 NC_008700.1 KEGG: pha:PSHAa0866 hypothetical protein; putative phosphohistidine phosphatase, SixA 3679691 4605354 Sama_3107 Shewanella amazonensis SB2B putative phosphohistidine phosphatase, SixA YP_928979.1 3679164 R 326297 CDS YP_928980.1 119776240 4605355 complement(3679771..3681912) 1 NC_008700.1 KEGG: vvu:VV20803 uncharacterized protein containing a von Willebrand factor type A (vWA) domain; von Willebrand factor type A (vWA) domain-containing protein 3681912 4605355 Sama_3108 Shewanella amazonensis SB2B von Willebrand factor type A (vWA) domain-containing protein YP_928980.1 3679771 R 326297 CDS YP_928981.1 119776241 4605356 complement(3682095..3682835) 1 NC_008700.1 KEGG: vvy:VVA1266 predicted transcriptional regulator; transcriptional regulator 3682835 4605356 Sama_3109 Shewanella amazonensis SB2B transcriptional regulator YP_928981.1 3682095 R 326297 CDS YP_928982.1 119776242 4605357 3683153..3686578 1 NC_008700.1 KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase; putative integral membrane sensor protein 3686578 4605357 Sama_3110 Shewanella amazonensis SB2B putative integral membrane sensor protein YP_928982.1 3683153 D 326297 CDS YP_928983.1 119776243 4605358 3686578..3687564 1 NC_008700.1 KEGG: pat:Patl_2248 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver protein 3687564 4605358 Sama_3111 Shewanella amazonensis SB2B response regulator receiver protein YP_928983.1 3686578 D 326297 CDS YP_928984.1 119776244 4605359 3687752..3689314 1 NC_008700.1 KEGG: son:SO3933 hypothetical protein; hypothetical protein 3689314 4605359 Sama_3112 Shewanella amazonensis SB2B hypothetical protein YP_928984.1 3687752 D 326297 CDS YP_928985.1 119776245 4605360 complement(3689385..3691658) 1 NC_008700.1 KEGG: sdn:Sden_0686 hypothetical protein; hypothetical protein 3691658 4605360 Sama_3113 Shewanella amazonensis SB2B hypothetical protein YP_928985.1 3689385 R 326297 CDS YP_928986.1 119776246 4605361 3692333..3692989 1 NC_008700.1 KEGG: sdn:Sden_0376 hypothetical protein; hypothetical protein 3692989 4605361 Sama_3114 Shewanella amazonensis SB2B hypothetical protein YP_928986.1 3692333 D 326297 CDS YP_928987.1 119776247 4605362 3692979..3695285 1 NC_008700.1 KEGG: sdn:Sden_0375 GGDEF domain protein; putative diguanylate phosphodiesterase 3695285 4605362 Sama_3115 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_928987.1 3692979 D 326297 CDS YP_928988.1 119776248 4605363 3695362..3696240 1 NC_008700.1 KEGG: sdn:Sden_0374 hypothetical protein; hypothetical protein 3696240 4605363 Sama_3116 Shewanella amazonensis SB2B hypothetical protein YP_928988.1 3695362 D 326297 CDS YP_928989.1 119776249 4605364 3696237..3696713 1 NC_008700.1 KEGG: sdn:Sden_0373 globin; globin 3696713 4605364 Sama_3117 Shewanella amazonensis SB2B globin YP_928989.1 3696237 D 326297 CDS YP_928990.1 119776250 4605365 complement(3696803..3697276) 1 NC_008700.1 KEGG: son:SO3490 hypothetical protein; hypothetical protein 3697276 4605365 Sama_3118 Shewanella amazonensis SB2B hypothetical protein YP_928990.1 3696803 R 326297 CDS YP_928991.1 119776251 4605366 3698165..3699052 1 NC_008700.1 KEGG: son:SO4340 hypothetical protein; hypothetical protein 3699052 4605366 Sama_3119 Shewanella amazonensis SB2B hypothetical protein YP_928991.1 3698165 D 326297 CDS YP_928992.1 119776252 4605367 3700055..3700594 1 NC_008700.1 KEGG: noc:Noc_0407 hypothetical protein; hypothetical protein 3700594 4605367 Sama_3120 Shewanella amazonensis SB2B hypothetical protein YP_928992.1 3700055 D 326297 CDS YP_928993.1 119776253 4605368 3700897..3702207 1 NC_008700.1 KEGG: bcn:Bcen_1761 hypothetical protein; hypothetical protein 3702207 4605368 Sama_3121 Shewanella amazonensis SB2B hypothetical protein YP_928993.1 3700897 D 326297 CDS YP_928994.1 119776254 4605369 complement(3702267..3702962) 1 NC_008700.1 KEGG: hch:HCH_01378 transposase and inactivated derivatives; transposase 3702962 4605369 Sama_3122 Shewanella amazonensis SB2B transposase YP_928994.1 3702267 R 326297 CDS YP_928995.1 119776255 4605370 3703217..3703966 1 NC_008700.1 hypothetical protein 3703966 4605370 Sama_3123 Shewanella amazonensis SB2B hypothetical protein YP_928995.1 3703217 D 326297 CDS YP_928996.1 119776256 4605371 complement(3704504..3706141) 1 NC_008700.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 3706141 groEL 4605371 groEL Shewanella amazonensis SB2B chaperonin GroEL YP_928996.1 3704504 R 326297 CDS YP_928997.1 119776257 4605372 complement(3706197..3706487) 1 NC_008700.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3706487 groES 4605372 groES Shewanella amazonensis SB2B co-chaperonin GroES YP_928997.1 3706197 R 326297 CDS YP_928998.1 119776258 4605373 3706716..3708083 1 NC_008700.1 KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 3708083 4605373 Sama_3126 Shewanella amazonensis SB2B MATE efflux family protein YP_928998.1 3706716 D 326297 CDS YP_928999.1 119776259 4605374 complement(3708198..3708737) 1 NC_008700.1 hypothetical protein 3708737 4605374 Sama_3127 Shewanella amazonensis SB2B hypothetical protein YP_928999.1 3708198 R 326297 CDS YP_929000.1 119776260 4605375 complement(3708934..3711318) 1 NC_008700.1 KEGG: son:SO0578 hypothetical protein; hypothetical protein 3711318 4605375 Sama_3128 Shewanella amazonensis SB2B hypothetical protein YP_929000.1 3708934 R 326297 CDS YP_929001.1 119776261 4605376 complement(3711339..3715049) 1 NC_008700.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; sensory box histidine kinase/response regulator 3715049 4605376 Sama_3129 Shewanella amazonensis SB2B sensory box histidine kinase/response regulator YP_929001.1 3711339 R 326297 CDS YP_929002.1 119776262 4605377 complement(3715245..3716636) 1 NC_008700.1 KEGG: son:SO0576 PhoH family protein; PhoH family protein 3716636 4605377 Sama_3130 Shewanella amazonensis SB2B PhoH family protein YP_929002.1 3715245 R 326297 CDS YP_929003.1 119776263 4605378 3716955..3719858 1 NC_008700.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 3719858 4605378 Sama_3131 Shewanella amazonensis SB2B ATP-dependent helicase HepA YP_929003.1 3716955 D 326297 CDS YP_929004.1 119776264 4605379 3720007..3721704 1 NC_008700.1 KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold; metal-dependent amidohydrolase with the TIM-barrel fold 3721704 4605379 Sama_3132 Shewanella amazonensis SB2B metal-dependent amidohydrolase with the TIM-barrel fold YP_929004.1 3720007 D 326297 CDS YP_929005.1 119776265 4605380 3721789..3722700 1 NC_008700.1 KEGG: son:SO0573 hypothetical protein; hypothetical protein 3722700 4605380 Sama_3133 Shewanella amazonensis SB2B hypothetical protein YP_929005.1 3721789 D 326297 CDS YP_929006.1 119776266 4605381 complement(3722702..3723202) 1 NC_008700.1 KEGG: cps:CPS_1797 hypothetical protein; hypothetical protein 3723202 4605381 Sama_3134 Shewanella amazonensis SB2B hypothetical protein YP_929006.1 3722702 R 326297 CDS YP_929007.1 119776267 4605382 complement(3723299..3724105) 1 NC_008700.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3724105 4605382 Sama_3135 Shewanella amazonensis SB2B enoyl-CoA hydratase YP_929007.1 3723299 R 326297 CDS YP_929008.1 119776268 4605383 3724392..3725399 1 NC_008700.1 KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 3725399 4605383 Sama_3136 Shewanella amazonensis SB2B CheC, inhibitor of MCP methylation YP_929008.1 3724392 D 326297 CDS YP_929009.1 119776269 4605384 3725413..3726372 1 NC_008700.1 KEGG: son:SO0569 sensory box/GGDEF family protein; response regulator receiver protein 3726372 4605384 Sama_3137 Shewanella amazonensis SB2B response regulator receiver protein YP_929009.1 3725413 D 326297 CDS YP_929010.1 119776270 4605385 complement(3726423..3726848) 1 NC_008700.1 KEGG: son:SO0568 hypothetical protein; hypothetical protein 3726848 4605385 Sama_3138 Shewanella amazonensis SB2B hypothetical protein YP_929010.1 3726423 R 326297 CDS YP_929011.1 119776271 4605386 complement(3726934..3727671) 1 NC_008700.1 KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acylglycerol-3-phosphate O-acyltransferase 3727671 4605386 Sama_3139 Shewanella amazonensis SB2B 1-acylglycerol-3-phosphate O-acyltransferase YP_929011.1 3726934 R 326297 CDS YP_929012.1 119776272 4605387 complement(3727816..3728571) 1 NC_008700.1 KEGG: son:SO0566 ABC 3 transport family protein; ABC 3 transport family protein 3728571 4605387 Sama_3140 Shewanella amazonensis SB2B ABC 3 transport family protein YP_929012.1 3727816 R 326297 CDS YP_929013.1 119776273 4605388 complement(3728575..3729483) 1 NC_008700.1 KEGG: son:SO0565 adhesion protein, putative; adhesion protein 3729483 4605388 Sama_3141 Shewanella amazonensis SB2B adhesion protein YP_929013.1 3728575 R 326297 CDS YP_929014.1 119776274 4605389 complement(3729464..3730657) 1 NC_008700.1 KEGG: sdn:Sden_0527 hypothetical protein; hypothetical protein 3730657 4605389 Sama_3142 Shewanella amazonensis SB2B hypothetical protein YP_929014.1 3729464 R 326297 CDS YP_929015.1 119776275 4605390 complement(3730736..3731029) 1 NC_008700.1 KEGG: sdn:Sden_0526 hypothetical protein; hypothetical protein 3731029 4605390 Sama_3143 Shewanella amazonensis SB2B hypothetical protein YP_929015.1 3730736 R 326297 CDS YP_929016.1 119776276 4605391 complement(3731354..3731683) 1 NC_008700.1 KEGG: son:SO0562 hypothetical protein; hypothetical protein 3731683 4605391 Sama_3144 Shewanella amazonensis SB2B hypothetical protein YP_929016.1 3731354 R 326297 CDS YP_929017.1 119776277 4605392 3731796..3733430 1 NC_008700.1 KEGG: vfi:VFA1107 mechanosensitive ion channel; mechanosensitive ion channel 3733430 4605392 Sama_3145 Shewanella amazonensis SB2B mechanosensitive ion channel YP_929017.1 3731796 D 326297 CDS YP_929018.1 119776278 4605393 complement(3733497..3735179) 1 NC_008700.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 3735179 4605393 Sama_3146 Shewanella amazonensis SB2B formate--tetrahydrofolate ligase YP_929018.1 3733497 R 326297 CDS YP_929019.1 119776279 4605394 3735350..3736240 1 NC_008700.1 KEGG: vch:VCA0859 oxidoreductase, aldo/keto reductase 2 family; aldo/keto reductase family oxidoreductase 3736240 4605394 Sama_3147 Shewanella amazonensis SB2B aldo/keto reductase family oxidoreductase YP_929019.1 3735350 D 326297 CDS YP_929020.1 119776280 4605395 complement(3736366..3737229) 1 NC_008700.1 KEGG: son:SO0559 MaoC domain protein; MaoC domain-containing protein 3737229 4605395 Sama_3148 Shewanella amazonensis SB2B MaoC domain-containing protein YP_929020.1 3736366 R 326297 CDS YP_929021.1 119776281 4605396 3737446..3738216 1 NC_008700.1 KEGG: son:SO0558 smtA protein; smtA protein 3738216 4605396 Sama_3149 Shewanella amazonensis SB2B smtA protein YP_929021.1 3737446 D 326297 CDS YP_929022.1 119776282 4605397 complement(3738233..3738865) 1 NC_008700.1 KEGG: sde:Sde_3103 CheD, stimulates methylation of MCP proteins; hypothetical protein 3738865 4605397 Sama_3150 Shewanella amazonensis SB2B hypothetical protein YP_929022.1 3738233 R 326297 CDS YP_929023.1 119776283 4605398 complement(3738985..3739896) 1 NC_008700.1 KEGG: son:SO0557 hypothetical protein; hypothetical protein 3739896 4605398 Sama_3151 Shewanella amazonensis SB2B hypothetical protein YP_929023.1 3738985 R 326297 CDS YP_929024.1 119776284 4605399 3739939..3740247 1 NC_008700.1 KEGG: sdn:Sden_0671 hypothetical protein; hypothetical protein 3740247 4605399 Sama_3152 Shewanella amazonensis SB2B hypothetical protein YP_929024.1 3739939 D 326297 CDS YP_929025.1 119776285 4605400 3740309..3742063 1 NC_008700.1 KEGG: son:SO0555 hypothetical protein; putative diguanylate phosphodiesterase 3742063 4605400 Sama_3153 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_929025.1 3740309 D 326297 CDS YP_929026.1 119776286 4605401 complement(3742073..3742597) 1 NC_008700.1 KEGG: son:SO0554 hypothetical protein; hypothetical protein 3742597 4605401 Sama_3154 Shewanella amazonensis SB2B hypothetical protein YP_929026.1 3742073 R 326297 CDS YP_929027.1 119776287 4605402 complement(3742843..3743352) 1 NC_008700.1 KEGG: son:SO0551 hypothetical protein; hypothetical protein 3743352 4605402 Sama_3155 Shewanella amazonensis SB2B hypothetical protein YP_929027.1 3742843 R 326297 CDS YP_929028.1 119776288 4605403 3743449..3743859 1 NC_008700.1 KEGG: son:SO0550 hypothetical protein; hypothetical protein 3743859 4605403 Sama_3156 Shewanella amazonensis SB2B hypothetical protein YP_929028.1 3743449 D 326297 CDS YP_929029.1 119776289 4605404 3743971..3744771 1 NC_008700.1 KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 3744771 4605404 Sama_3157 Shewanella amazonensis SB2B response regulator receiver protein YP_929029.1 3743971 D 326297 CDS YP_929030.1 119776290 4605405 3744903..3745175 1 NC_008700.1 KEGG: sdn:Sden_0658 histone-like DNA-binding protein; histone-like DNA-binding protein 3745175 4605405 Sama_3158 Shewanella amazonensis SB2B histone-like DNA-binding protein YP_929030.1 3744903 D 326297 CDS YP_929031.1 119776291 4605406 3745396..3746085 1 NC_008700.1 KEGG: son:SO0547 hypothetical protein; hypothetical protein 3746085 4605406 Sama_3159 Shewanella amazonensis SB2B hypothetical protein YP_929031.1 3745396 D 326297 CDS YP_929032.1 119776292 4605407 complement(3746106..3747011) 1 NC_008700.1 KEGG: son:SO0546 ribosomal protein S6 modification protein; ribosomal protein S6 modification protein 3747011 4605407 Sama_3160 Shewanella amazonensis SB2B ribosomal protein S6 modification protein YP_929032.1 3746106 R 326297 CDS YP_929033.1 119776293 4605408 complement(3747090..3748820) 1 NC_008700.1 KEGG: son:SO0545 response regulator; response regulator 3748820 4605408 Sama_3161 Shewanella amazonensis SB2B response regulator YP_929033.1 3747090 R 326297 CDS YP_929034.1 119776294 4605409 complement(3748831..3749259) 1 NC_008700.1 KEGG: shm:Shewmr7_3486 response regulator receiver protein; response regulator receiver protein 3749259 4605409 Sama_3162 Shewanella amazonensis SB2B response regulator receiver protein YP_929034.1 3748831 R 326297 CDS YP_929035.1 119776295 4605410 complement(3749256..3751307) 1 NC_008700.1 KEGG: son:SO0544 sensory box histidine kinase; sensory box histidine kinase 3751307 4605410 Sama_3163 Shewanella amazonensis SB2B sensory box histidine kinase YP_929035.1 3749256 R 326297 CDS YP_929036.1 119776296 4605411 3751647..3751829 1 NC_008700.1 KEGG: son:SO0543 hypothetical protein; hypothetical protein 3751829 4605411 Sama_3164 Shewanella amazonensis SB2B hypothetical protein YP_929036.1 3751647 D 326297 CDS YP_929037.1 119776297 4605412 3751952..3753307 1 NC_008700.1 KEGG: son:SO0542 hypothetical protein; hypothetical protein 3753307 4605412 Sama_3165 Shewanella amazonensis SB2B hypothetical protein YP_929037.1 3751952 D 326297 CDS YP_929038.1 119776298 4605413 complement(3753582..3754961) 1 NC_008700.1 KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein 3754961 4605413 Sama_3166 Shewanella amazonensis SB2B amino acid carrier protein YP_929038.1 3753582 R 326297 CDS YP_929039.1 119776299 4605414 complement(3755074..3755628) 1 NC_008700.1 KEGG: sdn:Sden_0648 hypothetical protein; hypothetical protein 3755628 4605414 Sama_3167 Shewanella amazonensis SB2B hypothetical protein YP_929039.1 3755074 R 326297 CDS YP_929040.1 119776300 4605415 complement(3755670..3755870) 1 NC_008700.1 hypothetical protein 3755870 4605415 Sama_3168 Shewanella amazonensis SB2B hypothetical protein YP_929040.1 3755670 R 326297 CDS YP_929041.1 119776301 4605416 complement(3756219..3757109) 1 NC_008700.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 3757109 metF 4605416 metF Shewanella amazonensis SB2B 5,10-methylenetetrahydrofolate reductase YP_929041.1 3756219 R 326297 CDS YP_929042.1 119776302 4605417 complement(3757284..3759677) 1 NC_008700.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 3759677 metL 4605417 metL Shewanella amazonensis SB2B bifunctional aspartate kinase II/homoserine dehydrogenase II YP_929042.1 3757284 R 326297 CDS YP_929043.1 119776303 4605418 complement(3759691..3760851) 1 NC_008700.1 KEGG: son:SO4056 cystathionine gamma-synthase; cystathionine gamma-synthase 3760851 4605418 Sama_3171 Shewanella amazonensis SB2B cystathionine gamma-synthase YP_929043.1 3759691 R 326297 CDS YP_929044.1 119776304 4605419 3761066..3761380 1 NC_008700.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 3761380 4605419 Sama_3172 Shewanella amazonensis SB2B transcriptional repressor protein MetJ YP_929044.1 3761066 D 326297 CDS YP_929045.1 119776305 4605420 3761445..3762182 1 NC_008700.1 KEGG: sdn:Sden_0613 protein of unknown function DUF81; hypothetical protein 3762182 4605420 Sama_3173 Shewanella amazonensis SB2B hypothetical protein YP_929045.1 3761445 D 326297 CDS YP_929046.1 119776306 4605421 complement(3762204..3763397) 1 NC_008700.1 KEGG: sec:SC4121 putative outer membrane or exported; putative outer membrane or exported 3763397 4605421 Sama_3174 Shewanella amazonensis SB2B putative outer membrane or exported YP_929046.1 3762204 R 326297 CDS YP_929047.1 119776307 4605422 complement(3763536..3764522) 1 NC_008700.1 KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase subunit C 3764522 4605422 Sama_3175 Shewanella amazonensis SB2B polysulfide reductase subunit C YP_929047.1 3763536 R 326297 CDS YP_929048.1 119776308 4605423 complement(3764525..3765091) 1 NC_008700.1 KEGG: son:SO4061 polysulfide reductase, subunit B; polysulfide reductase subunit B 3765091 4605423 Sama_3176 Shewanella amazonensis SB2B polysulfide reductase subunit B YP_929048.1 3764525 R 326297 CDS YP_929049.1 119776309 4605424 complement(3765105..3767387) 1 NC_008700.1 KEGG: son:SO4062 polysulfide reductase, subunit A; polysulfide reductase subunit A 3767387 4605424 Sama_3177 Shewanella amazonensis SB2B polysulfide reductase subunit A YP_929049.1 3765105 R 326297 CDS YP_929050.1 119776310 4605425 3768010..3768339 1 NC_008700.1 KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 3768339 4605425 Sama_3178 Shewanella amazonensis SB2B cytochrome c family protein YP_929050.1 3768010 D 326297 CDS YP_929051.1 119776311 4605426 3768411..3770216 1 NC_008700.1 KEGG: son:SO4143 hypothetical protein; hypothetical protein 3770216 4605426 Sama_3179 Shewanella amazonensis SB2B hypothetical protein YP_929051.1 3768411 D 326297 CDS YP_929052.1 119776312 4605427 3770257..3771672 1 NC_008700.1 KEGG: son:SO4144 cytochrome c, putative; cytochrome c 3771672 4605427 Sama_3180 Shewanella amazonensis SB2B cytochrome c YP_929052.1 3770257 D 326297 CDS YP_929053.1 119776313 4605428 3772018..3773139 1 NC_008700.1 KEGG: son:SO4150 transporter, putative; transporter 3773139 4605428 Sama_3181 Shewanella amazonensis SB2B transporter YP_929053.1 3772018 D 326297 CDS YP_929054.1 119776314 4605429 complement(3773155..3774984) 1 NC_008700.1 KEGG: son:SO4155 sensor histidine kinase; sensor histidine kinase 3774984 4605429 Sama_3182 Shewanella amazonensis SB2B sensor histidine kinase YP_929054.1 3773155 R 326297 CDS YP_929055.1 119776315 4605430 3775147..3775722 1 NC_008700.1 KEGG: son:SO4157 DNA-binding response regulator; response regulator receiver protein 3775722 4605430 Sama_3183 Shewanella amazonensis SB2B response regulator receiver protein YP_929055.1 3775147 D 326297 CDS YP_929056.1 119776316 4605431 3776141..3776629 1 NC_008700.1 KEGG: pfo:Pfl_3712 cupin region; cupin region 3776629 4605431 Sama_3184 Shewanella amazonensis SB2B cupin region YP_929056.1 3776141 D 326297 CDS YP_929057.1 119776317 4605432 complement(3776833..3777915) 1 NC_008700.1 KEGG: son:SO1144 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 3777915 4605432 Sama_3185 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_929057.1 3776833 R 326297 CDS YP_929058.1 119776318 4605433 complement(3778333..3778869) 1 NC_008700.1 KEGG: sdn:Sden_0602 response regulator receiver; response regulator receiver protein 3778869 4605433 Sama_3186 Shewanella amazonensis SB2B response regulator receiver protein YP_929058.1 3778333 R 326297 CDS YP_929059.1 119776319 4605434 complement(3778866..3780137) 1 NC_008700.1 KEGG: son:SO4173 sensor histidine kinase; sensor histidine kinase 3780137 4605434 Sama_3187 Shewanella amazonensis SB2B sensor histidine kinase YP_929059.1 3778866 R 326297 CDS YP_929060.1 119776320 4605435 complement(3780262..3783462) 1 NC_008700.1 KEGG: son:SO0520 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 3783462 4605435 Sama_3188 Shewanella amazonensis SB2B CzcA family heavy metal efflux protein YP_929060.1 3780262 R 326297 CDS YP_929061.1 119776321 4605436 complement(3783477..3784682) 1 NC_008700.1 KEGG: sdn:Sden_0575 secretion protein HlyD; secretion protein HlyD 3784682 4605436 Sama_3189 Shewanella amazonensis SB2B secretion protein HlyD YP_929061.1 3783477 R 326297 CDS YP_929062.1 119776322 4605437 complement(3785094..3785519) 1 NC_008700.1 KEGG: son:SO0516 hypothetical protein; hypothetical protein 3785519 4605437 Sama_3190 Shewanella amazonensis SB2B hypothetical protein YP_929062.1 3785094 R 326297 CDS YP_929063.1 119776323 4605438 complement(3785611..3785787) 1 NC_008700.1 KEGG: son:SO0515 hypothetical protein; hypothetical protein 3785787 4605438 Sama_3191 Shewanella amazonensis SB2B hypothetical protein YP_929063.1 3785611 R 326297 CDS YP_929064.1 119776324 4605439 complement(3785818..3786189) 1 NC_008700.1 KEGG: son:SO0514 hypothetical protein; hypothetical protein 3786189 4605439 Sama_3192 Shewanella amazonensis SB2B hypothetical protein YP_929064.1 3785818 R 326297 CDS YP_929065.1 119776325 4605440 3786280..3786693 1 NC_008700.1 KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 3786693 4605440 Sama_3193 Shewanella amazonensis SB2B peptidyl-tRNA hydrolase domain-containing protein YP_929065.1 3786280 D 326297 CDS YP_929066.1 119776326 4605441 3786804..3787259 1 NC_008700.1 KEGG: sdn:Sden_3285 3-dehydroquinate dehydratase, type II; 3-dehydroquinate dehydratase 3787259 4605441 Sama_3194 Shewanella amazonensis SB2B 3-dehydroquinate dehydratase YP_929066.1 3786804 D 326297 CDS YP_929067.1 119776327 4605442 3787259..3787687 1 NC_008700.1 KEGG: vpa:VP2880 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3787687 4605442 Sama_3195 Shewanella amazonensis SB2B acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_929067.1 3787259 D 326297 CDS YP_929068.1 119776328 4605443 3787677..3789041 1 NC_008700.1 KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3789041 4605443 Sama_3196 Shewanella amazonensis SB2B acetyl-CoA carboxylase, biotin carboxylase YP_929068.1 3787677 D 326297 CDS YP_929069.1 119776329 4605444 complement(3789009..3790049) 1 NC_008700.1 KEGG: shm:Shewmr7_0410 hypothetical protein; hypothetical protein 3790049 4605444 Sama_3197 Shewanella amazonensis SB2B hypothetical protein YP_929069.1 3789009 R 326297 CDS YP_929070.1 119776330 4605445 complement(3790069..3790581) 1 NC_008700.1 KEGG: son:SO4195 PAP2 family protein; PAP2 family protein 3790581 4605445 Sama_3198 Shewanella amazonensis SB2B PAP2 family protein YP_929070.1 3790069 R 326297 CDS YP_929071.1 119776331 4605446 complement(3790687..3790935) 1 NC_008700.1 KEGG: son:SO4196 hypothetical protein; hypothetical protein 3790935 4605446 Sama_3199 Shewanella amazonensis SB2B hypothetical protein YP_929071.1 3790687 R 326297 CDS YP_929072.1 119776332 4605447 3791276..3791761 1 NC_008700.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 3791761 4605447 Sama_3200 Shewanella amazonensis SB2B ribonuclease activity regulator protein RraA YP_929072.1 3791276 D 326297 CDS YP_929073.1 119776333 4605448 3791925..3792962 1 NC_008700.1 KEGG: sdn:Sden_0462 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 3792962 4605448 Sama_3201 Shewanella amazonensis SB2B arginase/agmatinase/formiminoglutamase YP_929073.1 3791925 D 326297 CDS YP_929074.1 119776334 4605449 3793193..3793948 1 NC_008700.1 KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 3793948 4605449 Sama_3202 Shewanella amazonensis SB2B ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_929074.1 3793193 D 326297 CDS YP_929075.1 119776335 4605450 3793948..3794565 1 NC_008700.1 KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 3794565 4605450 Sama_3203 Shewanella amazonensis SB2B hypothetical protein YP_929075.1 3793948 D 326297 CDS YP_929076.1 119776336 4605451 3794562..3796211 1 NC_008700.1 KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; ubiquinone biosynthesis protein AarF 3796211 4605451 Sama_3204 Shewanella amazonensis SB2B ubiquinone biosynthesis protein AarF YP_929076.1 3794562 D 326297 CDS YP_929077.1 119776337 4605452 3796274..3796507 1 NC_008700.1 KEGG: son:SO4202 Sec-independent protein translocase protein TatA; Sec-independent protein translocase protein TatA 3796507 4605452 Sama_3205 Shewanella amazonensis SB2B Sec-independent protein translocase protein TatA YP_929077.1 3796274 D 326297 CDS YP_929078.1 119776338 4605453 3796514..3796891 1 NC_008700.1 KEGG: sdn:Sden_0457 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB 3796891 4605453 Sama_3206 Shewanella amazonensis SB2B twin-arginine translocation protein TatB YP_929078.1 3796514 D 326297 CDS YP_929079.1 119776339 4605454 3796895..3797647 1 NC_008700.1 KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent periplasmic protein translocation protein TatC 3797647 4605454 Sama_3207 Shewanella amazonensis SB2B Sec-independent periplasmic protein translocation protein TatC YP_929079.1 3796895 D 326297 CDS YP_929080.1 119776340 4605455 3797742..3798278 1 NC_008700.1 KEGG: son:SO4205 hypothetical protein; hypothetical protein 3798278 4605455 Sama_3208 Shewanella amazonensis SB2B hypothetical protein YP_929080.1 3797742 D 326297 CDS YP_929081.1 119776341 4605456 3798302..3799105 1 NC_008700.1 KEGG: son:SO4206 hydrolase, TatD family; TatD family hydrolase 3799105 4605456 Sama_3209 Shewanella amazonensis SB2B TatD family hydrolase YP_929081.1 3798302 D 326297 CDS YP_929082.1 119776342 4605457 3799098..3800972 1 NC_008700.1 KEGG: son:SO4207 GGDEF domain protein protein; diguanylate cyclase 3800972 4605457 Sama_3210 Shewanella amazonensis SB2B diguanylate cyclase YP_929082.1 3799098 D 326297 CDS YP_929083.1 119776343 4605458 3800987..3801997 1 NC_008700.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3801997 4605458 Sama_3211 Shewanella amazonensis SB2B delta-aminolevulinic acid dehydratase YP_929083.1 3800987 D 326297 CDS YP_929084.1 119776344 4605459 3802168..3802704 1 NC_008700.1 KEGG: son:SO0409 hypothetical protein; hypothetical protein 3802704 4605459 Sama_3212 Shewanella amazonensis SB2B hypothetical protein YP_929084.1 3802168 D 326297 CDS YP_929085.1 119776345 4605460 complement(3802776..3805781) 1 NC_008700.1 KEGG: cps:CPS_4791 putative oar protein; putative oar protein 3805781 4605460 Sama_3213 Shewanella amazonensis SB2B putative oar protein YP_929085.1 3802776 R 326297 CDS YP_929086.1 119776346 4605461 complement(3805997..3806914) 1 NC_008700.1 KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; guanosine-5'-triphosphate,3'-diphosphate diphosphatase 3806914 4605461 Sama_3214 Shewanella amazonensis SB2B guanosine-5'-triphosphate,3'-diphosphate diphosphatase YP_929086.1 3805997 R 326297 CDS YP_929087.1 119776347 4605462 complement(3806926..3808245) 1 NC_008700.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 3808245 4605462 Sama_3215 Shewanella amazonensis SB2B ATP-dependent RNA helicase RhlB YP_929087.1 3806926 R 326297 CDS YP_929088.1 119776348 4605463 3808397..3808723 1 NC_008700.1 KEGG: sdn:Sden_0448 thioredoxin; thioredoxin 3808723 4605463 Sama_3216 Shewanella amazonensis SB2B thioredoxin YP_929088.1 3808397 D 326297 CDS YP_929089.1 119776349 4605464 3808940..3810202 1 NC_008700.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3810202 rho 4605464 rho Shewanella amazonensis SB2B transcription termination factor Rho YP_929089.1 3808940 D 326297 CDS YP_929090.1 119776350 4605465 complement(3810297..3811256) 1 NC_008700.1 KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 3811256 4605465 Sama_3218 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_929090.1 3810297 R 326297 CDS YP_929091.1 119776351 4605466 complement(3811363..3812091) 1 NC_008700.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3812091 frdB 4605466 frdB Shewanella amazonensis SB2B fumarate reductase iron-sulfur subunit YP_929091.1 3811363 R 326297 CDS YP_929092.1 119776352 4605467 complement(3812088..3814127) 1 NC_008700.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3814127 4605467 Sama_3220 Shewanella amazonensis SB2B fumarate reductase flavoprotein subunit YP_929092.1 3812088 R 326297 CDS YP_929093.1 119776353 4605468 complement(3814208..3814882) 1 NC_008700.1 KEGG: son:SO0397 fumarate reductase cytochrome B subunit; fumarate reductase cytochrome subunit B 3814882 4605468 Sama_3221 Shewanella amazonensis SB2B fumarate reductase cytochrome subunit B YP_929093.1 3814208 R 326297 CDS YP_929094.1 119776354 4605469 complement(3815047..3815778) 1 NC_008700.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 3815778 4605469 Sama_3222 Shewanella amazonensis SB2B fumarate reductase cytochrome b-556 subunit YP_929094.1 3815047 R 326297 CDS YP_929095.1 119776355 4605470 3816118..3817527 1 NC_008700.1 KEGG: ilo:IL0249 hypothetical protein; hypothetical protein 3817527 4605470 Sama_3223 Shewanella amazonensis SB2B hypothetical protein YP_929095.1 3816118 D 326297 CDS YP_929096.1 119776356 4605471 3817648..3818535 1 NC_008700.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3818535 prmA 4605471 prmA Shewanella amazonensis SB2B 50S ribosomal protein L11 methyltransferase YP_929096.1 3817648 D 326297 CDS YP_929097.1 119776357 4605472 3818683..3819654 1 NC_008700.1 KEGG: son:SO0394 tRNA-dihydrouridine synthase B; tRNA-dihydrouridine synthase B 3819654 4605472 Sama_3225 Shewanella amazonensis SB2B tRNA-dihydrouridine synthase B YP_929097.1 3818683 D 326297 CDS YP_929098.1 119776358 4605473 3819669..3819974 1 NC_008700.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3819974 fis 4605473 fis Shewanella amazonensis SB2B DNA-binding protein Fis YP_929098.1 3819669 D 326297 CDS YP_929099.1 119776359 4605474 complement(3820161..3820556) 1 NC_008700.1 KEGG: rba:RB5426 hypothetical protein; hypothetical protein 3820556 4605474 Sama_3227 Shewanella amazonensis SB2B hypothetical protein YP_929099.1 3820161 R 326297 CDS YP_929100.1 119776360 4605475 complement(3820817..3821971) 1 NC_008700.1 KEGG: vvy:VV2752 glycerate kinase; glycerate kinase 3821971 4605475 Sama_3228 Shewanella amazonensis SB2B glycerate kinase YP_929100.1 3820817 R 326297 CDS YP_929101.1 119776361 4605476 3822710..3823711 1 NC_008700.1 KEGG: bpa:BPP0826 hypothetical protein; hypothetical protein 3823711 4605476 Sama_3229 Shewanella amazonensis SB2B hypothetical protein YP_929101.1 3822710 D 326297 CDS YP_929102.1 119776362 4605477 3823901..3824401 1 NC_008700.1 hypothetical protein 3824401 4605477 Sama_3230 Shewanella amazonensis SB2B hypothetical protein YP_929102.1 3823901 D 326297 CDS YP_929103.1 119776363 4605478 complement(3824427..3824708) 1 NC_008700.1 KEGG: son:SO0793 hypothetical protein; hypothetical protein 3824708 4605478 Sama_3231 Shewanella amazonensis SB2B hypothetical protein YP_929103.1 3824427 R 326297 CDS YP_929104.1 119776364 4605479 complement(3824901..3825410) 1 NC_008700.1 hypothetical protein 3825410 4605479 Sama_3232 Shewanella amazonensis SB2B hypothetical protein YP_929104.1 3824901 R 326297 CDS YP_929105.1 119776365 4605480 3825771..3827876 1 NC_008700.1 KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 3827876 4605480 Sama_3233 Shewanella amazonensis SB2B TonB-dependent receptor YP_929105.1 3825771 D 326297 CDS YP_929106.1 119776366 4605481 3828019..3828807 1 NC_008700.1 hypothetical protein 3828807 4605481 Sama_3234 Shewanella amazonensis SB2B hypothetical protein YP_929106.1 3828019 D 326297 CDS YP_929107.1 119776367 4605482 3829138..3829524 1 NC_008700.1 hypothetical protein 3829524 4605482 Sama_3235 Shewanella amazonensis SB2B hypothetical protein YP_929107.1 3829138 D 326297 CDS YP_929108.1 119776368 4605483 3829918..3830622 1 NC_008700.1 KEGG: son:SO4302 hypothetical protein; hypothetical protein 3830622 4605483 Sama_3236 Shewanella amazonensis SB2B hypothetical protein YP_929108.1 3829918 D 326297 CDS YP_929109.1 119776369 4605484 complement(3830646..3831110) 1 NC_008700.1 KEGG: lipoprotein, putative; putative lipoprotein 3831110 4605484 Sama_3237 Shewanella amazonensis SB2B putative lipoprotein YP_929109.1 3830646 R 326297 CDS YP_929110.1 119776370 4605485 complement(3831225..3832166) 1 NC_008700.1 KEGG: vch:VC1165 hypothetical protein; hypothetical protein 3832166 4605485 Sama_3238 Shewanella amazonensis SB2B hypothetical protein YP_929110.1 3831225 R 326297 CDS YP_929111.1 119776371 4605486 complement(3832379..3833395) 1 NC_008700.1 KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin 3833395 4605486 Sama_3239 Shewanella amazonensis SB2B outer membrane porin YP_929111.1 3832379 R 326297 CDS YP_929112.1 119776372 4605487 complement(3833455..3834792) 1 NC_008700.1 KEGG: vpa:VPA0824 putative regulatory protein UhpC; putative regulatory protein UhpC 3834792 4605487 Sama_3240 Shewanella amazonensis SB2B putative regulatory protein UhpC YP_929112.1 3833455 R 326297 CDS YP_929113.1 119776373 4605488 3835051..3836310 1 NC_008700.1 KEGG: vch:VCA0706 phosphoglycerate transport regulatory protein PgtC, putative; phosphoglycerate transport regulatory protein PgtC 3836310 4605488 Sama_3241 Shewanella amazonensis SB2B phosphoglycerate transport regulatory protein PgtC YP_929113.1 3835051 D 326297 CDS YP_929114.1 119776374 4605489 3836310..3838673 1 NC_008700.1 KEGG: ppr:PBPRA2770 hypothetical phosphoglycerate transport regulatory protein PgtB; phosphoglycerate transport regulator 3838673 4605489 Sama_3242 Shewanella amazonensis SB2B phosphoglycerate transport regulator YP_929114.1 3836310 D 326297 CDS YP_929115.1 119776375 4605490 3838657..3839946 1 NC_008700.1 KEGG: ppr:PBPRA2771 phosphoglycerate transport system transcription regulator; response regulator receiver protein 3839946 4605490 Sama_3243 Shewanella amazonensis SB2B response regulator receiver protein YP_929115.1 3838657 D 326297 CDS YP_929116.1 119776376 4605491 3840011..3840502 1 NC_008700.1 KEGG: sdn:Sden_0395 divergent AAA region; putative transcriptional regulator 3840502 4605491 Sama_3244 Shewanella amazonensis SB2B putative transcriptional regulator YP_929116.1 3840011 D 326297 CDS YP_929117.1 119776377 4605492 complement(3840520..3841107) 1 NC_008700.1 KEGG: son:SO4304 urease accessory protein UreJ; urease accessory protein UreJ 3841107 4605492 Sama_3245 Shewanella amazonensis SB2B urease accessory protein UreJ YP_929117.1 3840520 R 326297 CDS YP_929118.1 119776378 4605493 complement(3841216..3841932) 1 NC_008700.1 KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD-superfamily hydrolase 3841932 4605493 Sama_3246 Shewanella amazonensis SB2B HAD-superfamily hydrolase YP_929118.1 3841216 R 326297 CDS YP_929119.1 119776379 4605494 complement(3841932..3842822) 1 NC_008700.1 KEGG: son:SO4306 integrase/recombinase XerC; integrase/recombinase XerC 3842822 4605494 Sama_3247 Shewanella amazonensis SB2B integrase/recombinase XerC YP_929119.1 3841932 R 326297 CDS YP_929120.1 119776380 4605495 complement(3842825..3843460) 1 NC_008700.1 KEGG: sfr:Sfri_0446 protein of unknown function DUF484; hypothetical protein 3843460 4605495 Sama_3248 Shewanella amazonensis SB2B hypothetical protein YP_929120.1 3842825 R 326297 CDS YP_929121.1 119776381 4605496 complement(3843457..3844284) 1 NC_008700.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3844284 dapF 4605496 dapF Shewanella amazonensis SB2B diaminopimelate epimerase YP_929121.1 3843457 R 326297 CDS YP_929122.1 119776382 4605497 complement(3844347..3845591) 1 NC_008700.1 KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase 3845591 4605497 Sama_3250 Shewanella amazonensis SB2B diaminopimelate decarboxylase YP_929122.1 3844347 R 326297 CDS YP_929123.1 119776383 4605498 complement(3845603..3845842) 1 NC_008700.1 KEGG: son:SO4310 hypothetical protein; hypothetical protein 3845842 4605498 Sama_3251 Shewanella amazonensis SB2B hypothetical protein YP_929123.1 3845603 R 326297 CDS YP_929124.1 119776384 4605499 3845845..3846177 1 NC_008700.1 KEGG: son:SO4311 CyaY protein; CyaY protein 3846177 4605499 Sama_3252 Shewanella amazonensis SB2B CyaY protein YP_929124.1 3845845 D 326297 CDS YP_929125.1 119776385 4605500 complement(3846202..3848631) 1 NC_008700.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 3848631 cyaA 4605500 cyaA Shewanella amazonensis SB2B adenylate cyclase YP_929125.1 3846202 R 326297 CDS YP_929126.1 119776386 4605501 3848789..3849769 1 NC_008700.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3849769 hemC 4605501 hemC Shewanella amazonensis SB2B porphobilinogen deaminase YP_929126.1 3848789 D 326297 CDS YP_929127.1 119776387 4605502 3849772..3850491 1 NC_008700.1 KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 3850491 4605502 Sama_3255 Shewanella amazonensis SB2B uroporphyrinogen-III synthase YP_929127.1 3849772 D 326297 CDS YP_929128.1 119776388 4605503 3850549..3851739 1 NC_008700.1 KEGG: son:SO4315 hemX protein; hemX protein 3851739 4605503 Sama_3256 Shewanella amazonensis SB2B hemX protein YP_929128.1 3850549 D 326297 CDS YP_929129.1 119776389 4605504 3851736..3852902 1 NC_008700.1 KEGG: son:SO4316 HemY protein; HemY protein 3852902 4605504 Sama_3257 Shewanella amazonensis SB2B HemY protein YP_929129.1 3851736 D 326297 CDS YP_929130.1 119776390 4605505 3853219..3865863 1 NC_008700.1 KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein; putative outer membrane adhesin like protein 3865863 4605505 Sama_3258 Shewanella amazonensis SB2B putative outer membrane adhesin like protein YP_929130.1 3853219 D 326297 CDS YP_929131.1 119776391 4605506 3865958..3868129 1 NC_008700.1 KEGG: son:SO4318 toxin secretion ATP-binding protein; toxin secretion ATP-binding protein 3868129 4605506 Sama_3259 Shewanella amazonensis SB2B toxin secretion ATP-binding protein YP_929131.1 3865958 D 326297 CDS YP_929132.1 119776392 4605507 3868126..3869508 1 NC_008700.1 KEGG: son:SO4319 HlyD family secretion protein; HlyD family secretion protein 3869508 4605507 Sama_3260 Shewanella amazonensis SB2B HlyD family secretion protein YP_929132.1 3868126 D 326297 CDS YP_929133.1 119776393 4605508 3869538..3870947 1 NC_008700.1 KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC; type I secretion outer membrane protein, TolC 3870947 4605508 Sama_3261 Shewanella amazonensis SB2B type I secretion outer membrane protein, TolC YP_929133.1 3869538 D 326297 CDS YP_929134.1 119776394 4605509 3870944..3871549 1 NC_008700.1 KEGG: sdn:Sden_0380 OmpA/MotB; OmpA/MotB protein 3871549 4605509 Sama_3262 Shewanella amazonensis SB2B OmpA/MotB protein YP_929134.1 3870944 D 326297 CDS YP_929135.1 119776395 4605510 3871566..3872273 1 NC_008700.1 KEGG: son:SO4322 hypothetical protein; hypothetical protein 3872273 4605510 Sama_3263 Shewanella amazonensis SB2B hypothetical protein YP_929135.1 3871566 D 326297 CDS YP_929136.1 119776396 4605511 3872282..3874201 1 NC_008700.1 KEGG: son:SO4323 GGDEF domain protein protein; putative diguanylate phosphodiesterase 3874201 4605511 Sama_3264 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_929136.1 3872282 D 326297 CDS YP_929137.1 119776397 4606026 3875054..3877642 1 NC_008700.1 KEGG: son:SO4324 GGDEF domain protein protein; diguanylate cyclase 3877642 4606026 Sama_3265 Shewanella amazonensis SB2B diguanylate cyclase YP_929137.1 3875054 D 326297 CDS YP_929138.1 119776398 4605513 complement(3877655..3879667) 1 NC_008700.1 KEGG: shm:Shewmr7_3650 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 3879667 4605513 Sama_3266 Shewanella amazonensis SB2B ATP-dependent DNA helicase Rep YP_929138.1 3877655 R 326297 CDS YP_929139.1 119776399 4605514 3879812..3880378 1 NC_008700.1 KEGG: son:SO4326 transcriptional regulator, TetR family; TetR family transcriptional regulator 3880378 4605514 Sama_3267 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_929139.1 3879812 D 326297 CDS YP_929140.1 119776400 4605515 3880395..3881513 1 NC_008700.1 KEGG: son:SO4327 HlyD family secretion domain protein; HlyD family secretion protein 3881513 4605515 Sama_3268 Shewanella amazonensis SB2B HlyD family secretion protein YP_929140.1 3880395 D 326297 CDS YP_929141.1 119776401 4605516 3881526..3884597 1 NC_008700.1 KEGG: vpa:VP0038 putative multidrug resistance protein; putative multidrug resistance protein 3884597 4605516 Sama_3269 Shewanella amazonensis SB2B putative multidrug resistance protein YP_929141.1 3881526 D 326297 CDS YP_929142.1 119776402 4605517 3884878..3887034 1 NC_008700.1 KEGG: vch:VC1560 catalase/peroxidase; catalase 3887034 4605517 Sama_3270 Shewanella amazonensis SB2B catalase YP_929142.1 3884878 D 326297 CDS YP_929143.1 119776403 4605518 3887161..3887418 1 NC_008700.1 KEGG: sdn:Sden_0405 protein of unknown function DUF526; hypothetical protein 3887418 4605518 Sama_3271 Shewanella amazonensis SB2B hypothetical protein YP_929143.1 3887161 D 326297 CDS YP_929144.1 119776404 4605519 complement(3887485..3888069) 1 NC_008700.1 KEGG: son:SO4304 urease accessory protein UreJ; urease accessory protein UreJ 3888069 4605519 Sama_3272 Shewanella amazonensis SB2B urease accessory protein UreJ YP_929144.1 3887485 R 326297 CDS YP_929145.1 119776405 4605520 complement(3888098..3888406) 1 NC_008700.1 hypothetical protein 3888406 4605520 Sama_3273 Shewanella amazonensis SB2B hypothetical protein YP_929145.1 3888098 R 326297 CDS YP_929146.1 119776406 4605521 3888687..3890126 1 NC_008700.1 KEGG: son:SO4334 inner membrane protein, putative; hypothetical protein 3890126 4605521 Sama_3274 Shewanella amazonensis SB2B hypothetical protein YP_929146.1 3888687 D 326297 CDS YP_929147.1 119776407 4605522 3890275..3891057 1 NC_008700.1 KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative; phosphatidylglycerophosphatase B 3891057 4605522 Sama_3275 Shewanella amazonensis SB2B phosphatidylglycerophosphatase B YP_929147.1 3890275 D 326297 CDS YP_929148.1 119776408 4605523 complement(3891054..3891797) 1 NC_008700.1 KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; amino acid ABC transporter substrate-binding protein 3891797 4605523 Sama_3276 Shewanella amazonensis SB2B amino acid ABC transporter substrate-binding protein YP_929148.1 3891054 R 326297 CDS YP_929149.1 119776409 4605524 complement(3891856..3892986) 1 NC_008700.1 KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase 3892986 4605524 Sama_3277 Shewanella amazonensis SB2B serine--pyruvate transaminase YP_929149.1 3891856 R 326297 CDS YP_929150.1 119776410 4605525 complement(3893120..3894715) 1 NC_008700.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 3894715 4605525 Sama_3278 Shewanella amazonensis SB2B threonine dehydratase YP_929150.1 3893120 R 326297 CDS YP_929151.1 119776411 4605526 complement(3894717..3896573) 1 NC_008700.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3896573 4605526 Sama_3279 Shewanella amazonensis SB2B dihydroxy-acid dehydratase YP_929151.1 3894717 R 326297 CDS YP_929152.1 119776412 4605527 complement(3896663..3896914) 1 NC_008700.1 KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 3896914 ilvM 4605527 ilvM Shewanella amazonensis SB2B acetolactate synthase 2 regulatory subunit YP_929152.1 3896663 R 326297 CDS YP_929153.1 119776413 4605528 complement(3896911..3898581) 1 NC_008700.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 3898581 4605528 Sama_3281 Shewanella amazonensis SB2B acetolactate synthase 2 catalytic subunit YP_929153.1 3896911 R 326297 CDS YP_929154.1 119776414 4605529 complement(3899079..3900560) 1 NC_008700.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3900560 4605529 Sama_3282 Shewanella amazonensis SB2B ketol-acid reductoisomerase YP_929154.1 3899079 R 326297 CDS YP_929155.1 119776415 4605530 3900776..3901654 1 NC_008700.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 3901654 4605530 Sama_3283 Shewanella amazonensis SB2B DNA-binding transcriptional regulator IlvY YP_929155.1 3900776 D 326297 CDS YP_929156.1 119776416 4605531 complement(3901708..3903018) 1 NC_008700.1 KEGG: vch:VCA0837 hemolysin, putative; hemolysin 3903018 4605531 Sama_3284 Shewanella amazonensis SB2B hemolysin YP_929156.1 3901708 R 326297 CDS YP_929157.1 119776417 4605532 3903099..3903902 1 NC_008700.1 KEGG: cvi:CV1638 probable amino acid ABC transporter; putative amino acid ABC transporter 3903902 4605532 Sama_3285 Shewanella amazonensis SB2B putative amino acid ABC transporter YP_929157.1 3903099 D 326297 CDS YP_929158.1 119776418 4605533 complement(3903986..3905773) 1 NC_008700.1 KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domain proteins); diguanylate cyclase 3905773 4605533 Sama_3286 Shewanella amazonensis SB2B diguanylate cyclase YP_929158.1 3903986 R 326297 CDS YP_929159.1 119776419 4605534 complement(3905858..3906871) 1 NC_008700.1 KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic sugar-binding protein 3906871 4605534 Sama_3287 Shewanella amazonensis SB2B periplasmic sugar-binding protein YP_929159.1 3905858 R 326297 CDS YP_929160.1 119776420 4605535 3907091..3908617 1 NC_008700.1 KEGG: son:SO0349 magnesium chelatase family protein; magnesium chelatase family protein 3908617 4605535 Sama_3288 Shewanella amazonensis SB2B magnesium chelatase family protein YP_929160.1 3907091 D 326297 CDS YP_929161.1 119776421 4605536 complement(3908878..3909738) 1 NC_008700.1 KEGG: vvy:VVA0111 hypothetical protein; hypothetical protein 3909738 4605536 Sama_3289 Shewanella amazonensis SB2B hypothetical protein YP_929161.1 3908878 R 326297 CDS YP_929162.1 119776422 4605537 3909924..3910844 1 NC_008700.1 KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 3910844 4605537 Sama_3290 Shewanella amazonensis SB2B putative acyltransferase YP_929162.1 3909924 D 326297 CDS YP_929163.1 119776423 4605538 3910837..3911778 1 NC_008700.1 KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase 3911778 4605538 Sama_3291 Shewanella amazonensis SB2B putative acyltransferase YP_929163.1 3910837 D 326297 CDS YP_929164.1 119776424 4605539 complement(3912502..3912981) 1 NC_008700.1 KEGG: ppr:PBPRA3591 hypothetical protein; hypothetical protein 3912981 4605539 Sama_3292 Shewanella amazonensis SB2B hypothetical protein YP_929164.1 3912502 R 326297 CDS YP_929165.1 119776425 4605540 3913328..3914098 1 NC_008700.1 KEGG: son:SO0346 transcriptional regulator GntR family; GntR family transcriptional regulator 3914098 4605540 Sama_3293 Shewanella amazonensis SB2B GntR family transcriptional regulator YP_929165.1 3913328 D 326297 CDS YP_929166.1 119776426 4605541 3914095..3914979 1 NC_008700.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3914979 prpB 4605541 prpB Shewanella amazonensis SB2B 2-methylisocitrate lyase YP_929166.1 3914095 D 326297 CDS YP_929167.1 119776427 4605542 3915169..3916305 1 NC_008700.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3916305 4605542 Sama_3295 Shewanella amazonensis SB2B methylcitrate synthase YP_929167.1 3915169 D 326297 CDS YP_929168.1 119776428 4605543 3916406..3918991 1 NC_008700.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3918991 4605543 Sama_3296 Shewanella amazonensis SB2B aconitate hydratase YP_929168.1 3916406 D 326297 CDS YP_929169.1 119776429 4605544 3919355..3920545 1 NC_008700.1 KEGG: pae:PA0793 hypothetical protein; hypothetical protein 3920545 4605544 Sama_3297 Shewanella amazonensis SB2B hypothetical protein YP_929169.1 3919355 D 326297 CDS YP_929170.1 119776430 4605545 3920808..3925292 1 NC_008700.1 KEGG: son:SO0341 sensory box protein; sensory box protein 3925292 4605545 Sama_3298 Shewanella amazonensis SB2B sensory box protein YP_929170.1 3920808 D 326297 CDS YP_929171.1 119776431 4605546 complement(3925499..3926584) 1 NC_008700.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3926584 4605546 Sama_3299 Shewanella amazonensis SB2B branched-chain amino acid aminotransferase YP_929171.1 3925499 R 326297 CDS YP_929172.1 119776432 4605547 3926693..3927862 1 NC_008700.1 KEGG: mag:amb1653 predicted acyl-CoA transferase/carnitine dehydratase; acyl-CoA transferase/carnitine dehydratase 3927862 4605547 Sama_3300 Shewanella amazonensis SB2B acyl-CoA transferase/carnitine dehydratase YP_929172.1 3926693 D 326297 CDS YP_929173.1 119776433 4605548 complement(3927896..3928753) 1 NC_008700.1 KEGG: son:SO4645 hypothetical protein; hypothetical protein 3928753 4605548 Sama_3301 Shewanella amazonensis SB2B hypothetical protein YP_929173.1 3927896 R 326297 CDS YP_929174.1 119776434 4605549 3928981..3929283 1 NC_008700.1 KEGG: sdn:Sden_1265 propeptide, PepSY amd peptidase M4; hypothetical protein 3929283 4605549 Sama_3302 Shewanella amazonensis SB2B hypothetical protein YP_929174.1 3928981 D 326297 CDS YP_929175.1 119776435 4605550 3929286..3929960 1 NC_008700.1 KEGG: son:SO4647 DNA-binding response regulator; response regulator receiver protein 3929960 4605550 Sama_3303 Shewanella amazonensis SB2B response regulator receiver protein YP_929175.1 3929286 D 326297 CDS YP_929176.1 119776436 4605551 3929960..3931360 1 NC_008700.1 KEGG: son:SO4648 sensor histidine kinase; sensor histidine kinase 3931360 4605551 Sama_3304 Shewanella amazonensis SB2B sensor histidine kinase YP_929176.1 3929960 D 326297 CDS YP_929177.1 119776437 4605552 complement(3931898..3932545) 1 NC_008700.1 KEGG: son:SO0782 hypothetical protein; hypothetical protein 3932545 4605552 Sama_3305 Shewanella amazonensis SB2B hypothetical protein YP_929177.1 3931898 R 326297 CDS YP_929178.1 119776438 4605553 complement(3932542..3934530) 1 NC_008700.1 KEGG: son:SO0783 hypothetical protein; hypothetical protein 3934530 4605553 Sama_3306 Shewanella amazonensis SB2B hypothetical protein YP_929178.1 3932542 R 326297 CDS YP_929179.1 119776439 4605554 complement(3935845..3936990) 1 NC_008700.1 KEGG: vch:VCA0267 multidrug resistance protein D; multidrug resistance protein D 3936990 4605554 Sama_3307 Shewanella amazonensis SB2B multidrug resistance protein D YP_929179.1 3935845 R 326297 CDS YP_929180.1 119776440 4605555 3937090..3937857 1 NC_008700.1 KEGG: vvy:VVA1441 AraC-type DNA-binding domain-containing protein; AraC-type DNA-binding domain-containing protein 3937857 4605555 Sama_3308 Shewanella amazonensis SB2B AraC-type DNA-binding domain-containing protein YP_929180.1 3937090 D 326297 CDS YP_929181.1 119776441 4605556 3938306..3939292 1 NC_008700.1 KEGG: sfr:Sfri_0767 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3939292 4605556 Sama_3309 Shewanella amazonensis SB2B diguanylate cyclase/phosphodiesterase YP_929181.1 3938306 D 326297 CDS YP_929182.1 119776442 4605557 complement(3939305..3940057) 1 NC_008700.1 KEGG: stm:STM3065 hypothetical protein; hypothetical protein 3940057 4605557 Sama_3310 Shewanella amazonensis SB2B hypothetical protein YP_929182.1 3939305 R 326297 CDS YP_929183.1 119776443 4605558 3940525..3941976 1 NC_008700.1 KEGG: son:SO4649 hypothetical protein; hypothetical protein 3941976 4605558 Sama_3311 Shewanella amazonensis SB2B hypothetical protein YP_929183.1 3940525 D 326297 CDS YP_929184.1 119776444 4605559 3942137..3942772 1 NC_008700.1 KEGG: dsy:DSY4339 hypothetical protein; hypothetical protein 3942772 4605559 Sama_3312 Shewanella amazonensis SB2B hypothetical protein YP_929184.1 3942137 D 326297 CDS YP_929185.1 119776445 4605560 complement(3942818..3944362) 1 NC_008700.1 KEGG: cps:CPS_2871 cold-active alkaline serine protease; cold-active alkaline serine protease 3944362 4605560 Sama_3313 Shewanella amazonensis SB2B cold-active alkaline serine protease YP_929185.1 3942818 R 326297 CDS YP_929186.1 119776446 4605561 complement(3944545..3945894) 1 NC_008700.1 KEGG: lpp:lpp1568 phospholipase; phospholipase 3945894 4605561 Sama_3314 Shewanella amazonensis SB2B phospholipase YP_929186.1 3944545 R 326297 CDS YP_929187.1 119776447 4605562 complement(3945967..3946683) 1 NC_008700.1 KEGG: hch:HCH_00871 uncharacterized secreted protein; hypothetical protein 3946683 4605562 Sama_3315 Shewanella amazonensis SB2B hypothetical protein YP_929187.1 3945967 R 326297 CDS YP_929188.1 119776448 4605563 3946825..3947085 1 NC_008700.1 KEGG: pfo:Pfl_3287 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 3947085 4605563 Sama_3316 Shewanella amazonensis SB2B transcriptional antiterminator Rof YP_929188.1 3946825 D 326297 CDS YP_929189.1 119776449 4605564 complement(3947088..3947441) 1 NC_008700.1 KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; hypothetical protein 3947441 4605564 Sama_3317 Shewanella amazonensis SB2B hypothetical protein YP_929189.1 3947088 R 326297 CDS YP_929190.1 119776450 4605565 complement(3947493..3949019) 1 NC_008700.1 KEGG: son:SO0336 hypothetical Na+/H+ antiporter; Na+/H+ antiporter 3949019 4605565 Sama_3318 Shewanella amazonensis SB2B Na+/H+ antiporter YP_929190.1 3947493 R 326297 CDS YP_929191.1 119776451 4605566 3949192..3949395 1 NC_008700.1 KEGG: sdn:Sden_0287 protein of unknown function DUF904; hypothetical protein 3949395 4605566 Sama_3319 Shewanella amazonensis SB2B hypothetical protein YP_929191.1 3949192 D 326297 CDS YP_929192.1 119776452 4605567 complement(3949400..3949648) 1 NC_008700.1 KEGG: son:SO0334 hypothetical protein; hypothetical protein 3949648 4605567 Sama_3320 Shewanella amazonensis SB2B hypothetical protein YP_929192.1 3949400 R 326297 CDS YP_929193.1 119776453 4605568 complement(3949999..3950613) 1 NC_008700.1 KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; thiol:disulfide interchange protein DsbA 3950613 4605568 Sama_3321 Shewanella amazonensis SB2B thiol:disulfide interchange protein DsbA YP_929193.1 3949999 R 326297 CDS YP_929194.1 119776454 4605569 complement(3950729..3951706) 1 NC_008700.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 3951706 4605569 Sama_3322 Shewanella amazonensis SB2B serine/threonine protein kinase YP_929194.1 3950729 R 326297 CDS YP_929195.1 119776455 4605570 complement(3951703..3952011) 1 NC_008700.1 KEGG: son:SO0331 hypothetical protein; hypothetical protein 3952011 4605570 Sama_3323 Shewanella amazonensis SB2B hypothetical protein YP_929195.1 3951703 R 326297 CDS YP_929196.1 119776456 4605571 3952020..3952304 1 NC_008700.1 hypothetical protein 3952304 4605571 Sama_3324 Shewanella amazonensis SB2B hypothetical protein YP_929196.1 3952020 D 326297 CDS YP_929197.1 119776457 4605572 complement(3952380..3953180) 1 NC_008700.1 KEGG: sdn:Sden_0281 hypothetical protein; hypothetical protein 3953180 4605572 Sama_3325 Shewanella amazonensis SB2B hypothetical protein YP_929197.1 3952380 R 326297 CDS YP_929198.1 119776458 4605573 3953446..3953835 1 NC_008700.1 KEGG: vpa:VPA0976 hypothetical protein; hypothetical protein 3953835 4605573 Sama_3326 Shewanella amazonensis SB2B hypothetical protein YP_929198.1 3953446 D 326297 CDS YP_929199.1 119776459 4605574 3953916..3954767 1 NC_008700.1 KEGG: son:SO0323 hypothetical protein; hypothetical protein 3954767 4605574 Sama_3327 Shewanella amazonensis SB2B hypothetical protein YP_929199.1 3953916 D 326297 CDS YP_929200.1 119776460 4605575 3954836..3956878 1 NC_008700.1 KEGG: sdn:Sden_0280 peptidase S9, prolyl oligopeptidase active site region; peptidase S9, prolyl oligopeptidase active site region 3956878 4605575 Sama_3328 Shewanella amazonensis SB2B peptidase S9, prolyl oligopeptidase active site region YP_929200.1 3954836 D 326297 CDS YP_929201.1 119776461 4605576 3957046..3957621 1 NC_008700.1 KEGG: son:SO0322 hypothetical protein; hypothetical protein 3957621 4605576 Sama_3329 Shewanella amazonensis SB2B hypothetical protein YP_929201.1 3957046 D 326297 CDS YP_929202.1 119776462 4605577 complement(3957712..3958287) 1 NC_008700.1 KEGG: son:SO0321 hypothetical protein; hypothetical protein 3958287 4605577 Sama_3330 Shewanella amazonensis SB2B hypothetical protein YP_929202.1 3957712 R 326297 CDS YP_929203.1 119776463 4605578 complement(3958349..3959398) 1 NC_008700.1 KEGG: son:SO0320 hypothetical protein; hypothetical protein 3959398 4605578 Sama_3331 Shewanella amazonensis SB2B hypothetical protein YP_929203.1 3958349 R 326297 CDS YP_929204.1 119776464 4605579 complement(3959580..3959927) 1 NC_008700.1 KEGG: son:SO0318 hypothetical protein; hypothetical protein 3959927 4605579 Sama_3332 Shewanella amazonensis SB2B hypothetical protein YP_929204.1 3959580 R 326297 CDS YP_929205.1 119776465 4605580 3960295..3960399 1 NC_008700.1 KEGG: vch:VCA1065 hypothetical protein; hypothetical protein 3960399 4605580 Sama_3333 Shewanella amazonensis SB2B hypothetical protein YP_929205.1 3960295 D 326297 CDS YP_929206.1 119776466 4605581 3960625..3962787 1 NC_008700.1 KEGG: vch:VCA1063 ornithine decarboxylase, inducible; ornithine decarboxylase 3962787 4605581 Sama_3334 Shewanella amazonensis SB2B ornithine decarboxylase YP_929206.1 3960625 D 326297 CDS YP_929207.1 119776467 4605582 3962848..3964164 1 NC_008700.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 3964164 potE 4605582 potE Shewanella amazonensis SB2B putrescine transporter YP_929207.1 3962848 D 326297 CDS YP_929208.1 119776468 4605583 3964229..3965383 1 NC_008700.1 KEGG: son:SO0312 outer membrane porin, putative; outer membrane porin 3965383 4605583 Sama_3336 Shewanella amazonensis SB2B outer membrane porin YP_929208.1 3964229 D 326297 CDS YP_929209.1 119776469 4605584 complement(3965553..3966968) 1 NC_008700.1 KEGG: mag:amb2266 homospermidine synthase; homospermidine synthase 3966968 4605584 Sama_3337 Shewanella amazonensis SB2B homospermidine synthase YP_929209.1 3965553 R 326297 CDS YP_929210.1 119776470 4605585 complement(3967080..3967544) 1 NC_008700.1 KEGG: pfl:PFL_2399 hypothetical protein; hypothetical protein 3967544 4605585 Sama_3338 Shewanella amazonensis SB2B hypothetical protein YP_929210.1 3967080 R 326297 CDS YP_929211.1 119776471 4605586 3967640..3968233 1 NC_008700.1 KEGG: pfo:Pfl_0732 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3968233 4605586 Sama_3339 Shewanella amazonensis SB2B N-acetyltransferase GCN5 YP_929211.1 3967640 D 326297 CDS YP_929212.1 119776472 4605587 complement(3968222..3969190) 1 NC_008700.1 hypothetical protein 3969190 4605587 Sama_3340 Shewanella amazonensis SB2B hypothetical protein YP_929212.1 3968222 R 326297 CDS YP_929213.1 119776473 4605588 3969397..3969792 1 NC_008700.1 KEGG: xcb:XC_0916 transcriptional regulator BlaI family; CopY family transcriptional regulator 3969792 4605588 Sama_3341 Shewanella amazonensis SB2B CopY family transcriptional regulator YP_929213.1 3969397 D 326297 CDS YP_929214.1 119776474 4605589 3969785..3970996 1 NC_008700.1 KEGG: xom:XOO_1086 TonB-like protein; predicted signal transduction N-terminal membrane component; antirepressor regulating drug resistance protein 3970996 4605589 Sama_3342 Shewanella amazonensis SB2B antirepressor regulating drug resistance protein YP_929214.1 3969785 D 326297 CDS YP_929215.1 119776475 4605590 3971290..3971829 1 NC_008700.1 KEGG: sal:Sala_0117 methionine sulfoxide reductase A; methionine sulfoxide reductase A 3971829 4605590 Sama_3343 Shewanella amazonensis SB2B methionine sulfoxide reductase A YP_929215.1 3971290 D 326297 CDS YP_929216.1 119776476 4605591 3971850..3972350 1 NC_008700.1 hypothetical protein 3972350 4605591 Sama_3344 Shewanella amazonensis SB2B hypothetical protein YP_929216.1 3971850 D 326297 CDS YP_929217.1 119776477 4605592 3972350..3972652 1 NC_008700.1 KEGG: bth:BT3215 hypothetical protein; hypothetical protein 3972652 4605592 Sama_3345 Shewanella amazonensis SB2B hypothetical protein YP_929217.1 3972350 D 326297 CDS YP_929218.1 119776478 4605593 3972956..3973504 1 NC_008700.1 KEGG: tdn:Tmden_1127 HPP; hypothetical protein 3973504 4605593 Sama_3346 Shewanella amazonensis SB2B hypothetical protein YP_929218.1 3972956 D 326297 CDS YP_929219.1 119776479 4605594 complement(3973559..3973993) 1 NC_008700.1 KEGG: bpm:BURPS1710b_0248 transcriptional regulator, MerR family; MerR family transcriptional regulator 3973993 4605594 Sama_3347 Shewanella amazonensis SB2B MerR family transcriptional regulator YP_929219.1 3973559 R 326297 CDS YP_929220.1 119776480 4605595 3974068..3974559 1 NC_008700.1 KEGG: vpa:VPA0786 hypothetical protein; hypothetical protein 3974559 4605595 Sama_3348 Shewanella amazonensis SB2B hypothetical protein YP_929220.1 3974068 D 326297 CDS YP_929221.1 119776481 4605596 complement(3974616..3977036) 1 NC_008700.1 KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein 3977036 4605596 Sama_3349 Shewanella amazonensis SB2B hypothetical protein YP_929221.1 3974616 R 326297 CDS YP_929222.1 119776482 4605597 complement(3977181..3977585) 1 NC_008700.1 KEGG: son:SO0309 hypothetical protein; hypothetical protein 3977585 4605597 Sama_3350 Shewanella amazonensis SB2B hypothetical protein YP_929222.1 3977181 R 326297 CDS YP_929223.1 119776483 4605598 3977718..3978953 1 NC_008700.1 KEGG: son:SO0308 hypothetical protein; hypothetical protein 3978953 4605598 Sama_3351 Shewanella amazonensis SB2B hypothetical protein YP_929223.1 3977718 D 326297 CDS YP_929224.1 119776484 4605599 3979107..3980747 1 NC_008700.1 KEGG: son:SO0306 hypothetical protein; hypothetical protein 3980747 4605599 Sama_3352 Shewanella amazonensis SB2B hypothetical protein YP_929224.1 3979107 D 326297 CDS YP_929225.1 119776485 4606027 complement(3981266..3982111) 1 NC_008700.1 KEGG: sdn:Sden_0274 protein of unknown function UPF0011; hypothetical protein 3982111 4606027 Sama_3353 Shewanella amazonensis SB2B hypothetical protein YP_929225.1 3981266 R 326297 CDS YP_929226.1 119776486 4605601 3982242..3984029 1 NC_008700.1 KEGG: son:SO0300 lipoprotein, putative; putative lipoprotein 3984029 4605601 Sama_3354 Shewanella amazonensis SB2B putative lipoprotein YP_929226.1 3982242 D 326297 CDS YP_929227.1 119776487 4605602 3984026..3984352 1 NC_008700.1 KEGG: son:SO0299 predicted endonuclease; hypothetical protein 3984352 4605602 Sama_3355 Shewanella amazonensis SB2B hypothetical protein YP_929227.1 3984026 D 326297 CDS YP_929228.1 119776488 4605603 3984459..3985052 1 NC_008700.1 KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 3985052 4605603 Sama_3356 Shewanella amazonensis SB2B phosphoheptose isomerase YP_929228.1 3984459 D 326297 CDS YP_929229.1 119776489 4605604 3985049..3985615 1 NC_008700.1 KEGG: son:SO0297 lipoprotein, putative; putative lipoprotein 3985615 4605604 Sama_3357 Shewanella amazonensis SB2B putative lipoprotein YP_929229.1 3985049 D 326297 CDS YP_929230.1 119776490 4605605 complement(3985605..3986477) 1 NC_008700.1 KEGG: son:SO0296 integral membrane domain protein; integral membrane domain-containing protein 3986477 4605605 Sama_3358 Shewanella amazonensis SB2B integral membrane domain-containing protein YP_929230.1 3985605 R 326297 CDS YP_929231.1 119776491 4605606 3986603..3987493 1 NC_008700.1 KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator 3987493 4605606 Sama_3359 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_929231.1 3986603 D 326297 CDS YP_929232.1 119776492 4605607 complement(3987548..3988546) 1 NC_008700.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3988546 4605607 Sama_3360 Shewanella amazonensis SB2B tryptophanyl-tRNA synthetase YP_929232.1 3987548 R 326297 CDS YP_929233.1 119776493 4605608 complement(3988559..3989242) 1 NC_008700.1 KEGG: son:SO0293 phosphoglycolate phosphatase; phosphoglycolate phosphatase 3989242 4605608 Sama_3361 Shewanella amazonensis SB2B phosphoglycolate phosphatase YP_929233.1 3988559 R 326297 CDS YP_929234.1 119776494 4605609 complement(3989242..3989934) 1 NC_008700.1 KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 3989934 4605609 Sama_3362 Shewanella amazonensis SB2B ribulose-phosphate 3-epimerase YP_929234.1 3989242 R 326297 CDS YP_929235.1 119776495 4605610 3990115..3990495 1 NC_008700.1 KEGG: son:SO0291 hypothetical protein; hypothetical protein 3990495 4605610 Sama_3363 Shewanella amazonensis SB2B hypothetical protein YP_929235.1 3990115 D 326297 CDS YP_929236.1 119776496 4605611 3990507..3990689 1 NC_008700.1 KEGG: son:SO0290 hypothetical protein; hypothetical protein 3990689 4605611 Sama_3364 Shewanella amazonensis SB2B hypothetical protein YP_929236.1 3990507 D 326297 CDS YP_929237.1 119776497 4605612 complement(3990718..3991560) 1 NC_008700.1 KEGG: son:SO0289 DNA adenine methylase; site-specific DNA-methyltransferase (adenine-specific) 3991560 4605612 Sama_3365 Shewanella amazonensis SB2B site-specific DNA-methyltransferase (adenine-specific) YP_929237.1 3990718 R 326297 CDS YP_929238.1 119776498 4605613 complement(3991612..3993150) 1 NC_008700.1 KEGG: son:SO0288 DamX domain protein; DamX domain-containing protein 3993150 4605613 Sama_3366 Shewanella amazonensis SB2B DamX domain-containing protein YP_929238.1 3991612 R 326297 CDS YP_929239.1 119776499 4605614 complement(3993164..3994243) 1 NC_008700.1 KEGG: son:SO0287 3-dehydroquinate synthase; 3-dehydroquinate synthase 3994243 4605614 Sama_3367 Shewanella amazonensis SB2B 3-dehydroquinate synthase YP_929239.1 3993164 R 326297 CDS YP_929240.1 119776500 4605615 complement(3994250..3994765) 1 NC_008700.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3994765 aroK 4605615 aroK Shewanella amazonensis SB2B shikimate kinase I YP_929240.1 3994250 R 326297 CDS YP_929241.1 119776501 4605616 complement(3994976..3997033) 1 NC_008700.1 KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus biogenesis protein PilQ 3997033 4605616 Sama_3369 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilQ YP_929241.1 3994976 R 326297 CDS YP_929242.1 119776502 4605617 complement(3997055..3997573) 1 NC_008700.1 KEGG: son:SO0284 type IV pilus biogenesis protein PilP; type IV pilus biogenesis protein PilP 3997573 4605617 Sama_3370 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilP YP_929242.1 3997055 R 326297 CDS YP_929243.1 119776503 4605618 complement(3997570..3998202) 1 NC_008700.1 KEGG: son:SO0283 type IV pilus biogenesis protein PilO; type IV pilus biogenesis protein PilO 3998202 4605618 Sama_3371 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilO YP_929243.1 3997570 R 326297 CDS YP_929244.1 119776504 4605619 complement(3998199..3998792) 1 NC_008700.1 KEGG: son:SO0282 type IV pilus biogenesis protein PilN; type IV pilus biogenesis protein PilN 3998792 4605619 Sama_3372 Shewanella amazonensis SB2B type IV pilus biogenesis protein PilN YP_929244.1 3998199 R 326297 CDS YP_929245.1 119776505 4605620 complement(3998780..3999859) 1 NC_008700.1 KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 3999859 4605620 Sama_3373 Shewanella amazonensis SB2B type IV pilus assembly protein PilM YP_929245.1 3998780 R 326297 CDS YP_929246.1 119776506 4605621 4000044..4002584 1 NC_008700.1 KEGG: son:SO0280 penicillin-binding protein 1A; penicillin-binding protein 1A 4002584 4605621 Sama_3374 Shewanella amazonensis SB2B penicillin-binding protein 1A YP_929246.1 4000044 D 326297 CDS YP_929247.1 119776507 4605622 4002900..4004975 1 NC_008700.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4004975 4605622 Sama_3375 Shewanella amazonensis SB2B ATP-dependent DNA helicase RecG YP_929247.1 4002900 D 326297 CDS YP_929248.1 119776508 4605623 4005077..4005964 1 NC_008700.1 KEGG: son:SO4365 hypothetical protein; hypothetical protein 4005964 4605623 Sama_3376 Shewanella amazonensis SB2B hypothetical protein YP_929248.1 4005077 D 326297 CDS YP_929249.1 119776509 4605624 4006194..4006877 1 NC_008700.1 KEGG: son:SO4366 hypothetical protein; hypothetical protein 4006877 4605624 Sama_3377 Shewanella amazonensis SB2B hypothetical protein YP_929249.1 4006194 D 326297 CDS YP_929250.1 119776510 4605625 4006870..4007697 1 NC_008700.1 KEGG: son:SO4367 acyltransferase family protein; acyltransferase family protein 4007697 4605625 Sama_3378 Shewanella amazonensis SB2B acyltransferase family protein YP_929250.1 4006870 D 326297 CDS YP_929251.1 119776511 4605626 4007694..4007954 1 NC_008700.1 KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein 4007954 4605626 Sama_3379 Shewanella amazonensis SB2B acyl carrier protein YP_929251.1 4007694 D 326297 CDS YP_929252.1 119776512 4605627 4007959..4008207 1 NC_008700.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4008207 4605627 Sama_3380 Shewanella amazonensis SB2B acyl carrier protein YP_929252.1 4007959 D 326297 CDS YP_929253.1 119776513 4605628 4008207..4008755 1 NC_008700.1 KEGG: son:SO4370 hypothetical protein; hypothetical protein 4008755 4605628 Sama_3381 Shewanella amazonensis SB2B hypothetical protein YP_929253.1 4008207 D 326297 CDS YP_929254.1 119776514 4605629 4008759..4010138 1 NC_008700.1 KEGG: son:SO4371 hypothetical protein; hypothetical protein 4010138 4605629 Sama_3382 Shewanella amazonensis SB2B hypothetical protein YP_929254.1 4008759 D 326297 CDS YP_929255.1 119776515 4605630 4010131..4010493 1 NC_008700.1 KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein 4010493 4605630 Sama_3383 Shewanella amazonensis SB2B thioester dehydrase family protein YP_929255.1 4010131 D 326297 CDS YP_929256.1 119776516 4605631 4010493..4012151 1 NC_008700.1 KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 4012151 4605631 Sama_3384 Shewanella amazonensis SB2B glycosyl transferase family protein YP_929256.1 4010493 D 326297 CDS YP_929257.1 119776517 4605632 4012189..4013745 1 NC_008700.1 KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase 4013745 4605632 Sama_3385 Shewanella amazonensis SB2B histidine ammonia-lyase YP_929257.1 4012189 D 326297 CDS YP_929258.1 119776518 4605633 4013742..4014173 1 NC_008700.1 KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 4014173 4605633 Sama_3386 Shewanella amazonensis SB2B 4-hydroxybenzoyl-CoA thioesterase YP_929258.1 4013742 D 326297 CDS YP_929259.1 119776519 4605634 4014228..4014959 1 NC_008700.1 KEGG: son:SO4376 hypothetical protein; hypothetical protein 4014959 4605634 Sama_3387 Shewanella amazonensis SB2B hypothetical protein YP_929259.1 4014228 D 326297 CDS YP_929260.1 119776520 4605635 4014965..4017364 1 NC_008700.1 KEGG: son:SO4377 hypothetical protein; hypothetical protein 4017364 4605635 Sama_3388 Shewanella amazonensis SB2B hypothetical protein YP_929260.1 4014965 D 326297 CDS YP_929261.1 119776521 4605636 4017365..4018639 1 NC_008700.1 KEGG: son:SO4378 FAD-binding protein; FAD-binding protein 4018639 4605636 Sama_3389 Shewanella amazonensis SB2B FAD-binding protein YP_929261.1 4017365 D 326297 CDS YP_929262.1 119776522 4605637 4018639..4019307 1 NC_008700.1 KEGG: son:SO4379 hypothetical protein; hypothetical protein 4019307 4605637 Sama_3390 Shewanella amazonensis SB2B hypothetical protein YP_929262.1 4018639 D 326297 CDS YP_929263.1 119776523 4605638 4019353..4020558 1 NC_008700.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4020558 4605638 Sama_3391 Shewanella amazonensis SB2B 3-oxoacyl-ACP synthase YP_929263.1 4019353 D 326297 CDS YP_929264.1 119776524 4605639 4020551..4021054 1 NC_008700.1 KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein 4021054 4605639 Sama_3392 Shewanella amazonensis SB2B thioester dehydrase family protein YP_929264.1 4020551 D 326297 CDS YP_929265.1 119776525 4605640 4021070..4021795 1 NC_008700.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4021795 fabG 4605640 fabG Shewanella amazonensis SB2B 3-ketoacyl-ACP reductase YP_929265.1 4021070 D 326297 CDS YP_929266.1 119776526 4605641 4021792..4023024 1 NC_008700.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4023024 4605641 Sama_3394 Shewanella amazonensis SB2B 3-oxoacyl-(acyl carrier protein) synthase II YP_929266.1 4021792 D 326297 CDS YP_929267.1 119776527 4605642 4023059..4023799 1 NC_008700.1 KEGG: son:SO4384 hypothetical protein; hypothetical protein 4023799 4605642 Sama_3395 Shewanella amazonensis SB2B hypothetical protein YP_929267.1 4023059 D 326297 CDS YP_929268.1 119776528 4605643 complement(4023806..4024936) 1 NC_008700.1 KEGG: eba:ebA192 hypothetical protein; response regulator receiver protein 4024936 4605643 Sama_3396 Shewanella amazonensis SB2B response regulator receiver protein YP_929268.1 4023806 R 326297 CDS YP_929269.1 119776529 4605644 4025099..4025416 1 NC_008700.1 KEGG: son:SO4394 phage shock protein E; phage shock protein E 4025416 4605644 Sama_3397 Shewanella amazonensis SB2B phage shock protein E YP_929269.1 4025099 D 326297 CDS YP_929270.1 119776530 4605645 complement(4025623..4026213) 1 NC_008700.1 KEGG: sdn:Sden_3478 (acyl-carrier protein) phosphodiesterase; ACP phosphodiesterase 4026213 4605645 Sama_3398 Shewanella amazonensis SB2B ACP phosphodiesterase YP_929270.1 4025623 R 326297 CDS YP_929271.1 119776531 4605646 complement(4026371..4026946) 1 NC_008700.1 hypothetical protein 4026946 4605646 Sama_3399 Shewanella amazonensis SB2B hypothetical protein YP_929271.1 4026371 R 326297 CDS YP_929272.1 119776532 4605647 complement(4026959..4028179) 1 NC_008700.1 KEGG: mag:amb2240 TPR repeat; typically periplasmic; contain C-terminal PDZ domain; trypsin-like serine protease 4028179 4605647 Sama_3400 Shewanella amazonensis SB2B trypsin-like serine protease YP_929272.1 4026959 R 326297 CDS YP_929273.1 119776533 4605648 complement(4028324..4028767) 1 NC_008700.1 KEGG: son:SO4397 hypothetical acetyltransferase; acetyltransferase 4028767 4605648 Sama_3401 Shewanella amazonensis SB2B acetyltransferase YP_929273.1 4028324 R 326297 CDS YP_929274.1 119776534 4605649 complement(4028769..4029206) 1 NC_008700.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4029206 4605649 Sama_3402 Shewanella amazonensis SB2B D-tyrosyl-tRNA(Tyr) deacylase YP_929274.1 4028769 R 326297 CDS YP_929275.1 119776535 4605650 complement(4029278..4030165) 1 NC_008700.1 KEGG: son:SO4400 proline iminopeptidase, putative; proline iminopeptidase 4030165 4605650 Sama_3403 Shewanella amazonensis SB2B proline iminopeptidase YP_929275.1 4029278 R 326297 CDS YP_929276.1 119776536 4605651 complement(4030230..4031141) 1 NC_008700.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4031141 rbn 4605651 rbn Shewanella amazonensis SB2B ribonuclease BN YP_929276.1 4030230 R 326297 CDS YP_929277.1 119776537 4605652 4031294..4031515 1 NC_008700.1 KEGG: son:SO4402 hypothetical protein; hypothetical protein 4031515 4605652 Sama_3405 Shewanella amazonensis SB2B hypothetical protein YP_929277.1 4031294 D 326297 CDS YP_929278.1 119776538 4605653 4031533..4032186 1 NC_008700.1 KEGG: son:SO4403 hypothetical protein; hypothetical protein 4032186 4605653 Sama_3406 Shewanella amazonensis SB2B hypothetical protein YP_929278.1 4031533 D 326297 CDS YP_929279.1 119776539 4605654 complement(4032248..4033141) 1 NC_008700.1 KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 4033141 4605654 Sama_3407 Shewanella amazonensis SB2B hypothetical protein YP_929279.1 4032248 R 326297 CDS YP_929280.1 119776540 4605655 complement(4033138..4034487) 1 NC_008700.1 KEGG: vch:VCA0960 GGDEF family protein; diguanylate cyclase 4034487 4605655 Sama_3408 Shewanella amazonensis SB2B diguanylate cyclase YP_929280.1 4033138 R 326297 CDS YP_929281.1 119776541 4605656 4034688..4034987 1 NC_008700.1 KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 4034987 4605656 Sama_3409 Shewanella amazonensis SB2B putative iron uptake protein YP_929281.1 4034688 D 326297 CDS YP_929282.1 119776542 4605657 4034984..4036543 1 NC_008700.1 KEGG: son:SO3407 hypothetical protein; hypothetical protein 4036543 4605657 Sama_3410 Shewanella amazonensis SB2B hypothetical protein YP_929282.1 4034984 D 326297 CDS YP_929283.1 119776543 4605658 4036540..4036869 1 NC_008700.1 hypothetical protein 4036869 4605658 Sama_3411 Shewanella amazonensis SB2B hypothetical protein YP_929283.1 4036540 D 326297 CDS YP_929284.1 119776544 4605659 4036983..4039058 1 NC_008700.1 KEGG: ana:alr2175 ferrichrome iron receptor; ferrichrome iron receptor 4039058 4605659 Sama_3412 Shewanella amazonensis SB2B ferrichrome iron receptor YP_929284.1 4036983 D 326297 CDS YP_929285.1 119776545 4605660 4039063..4040133 1 NC_008700.1 KEGG: cps:CPS_2723 putative iron-regulated membrane protein; putative iron-regulated membrane protein 4040133 4605660 Sama_3413 Shewanella amazonensis SB2B putative iron-regulated membrane protein YP_929285.1 4039063 D 326297 CDS YP_929286.1 119776546 4605661 4040377..4042410 1 NC_008700.1 KEGG: vch:VCA0813 aminopeptidase; aminopeptidase-like protein 4042410 4605661 Sama_3414 Shewanella amazonensis SB2B aminopeptidase-like protein YP_929286.1 4040377 D 326297 CDS YP_929287.1 119776547 4605662 complement(4042462..4044276) 1 NC_008700.1 KEGG: son:SO4408 virulence regulator BipA; virulence regulator BipA 4044276 4605662 Sama_3415 Shewanella amazonensis SB2B virulence regulator BipA YP_929287.1 4042462 R 326297 CDS YP_929288.1 119776548 4605663 4044735..4046144 1 NC_008700.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4046144 glnA 4605663 glnA Shewanella amazonensis SB2B glutamine synthetase YP_929288.1 4044735 D 326297 CDS YP_929289.1 119776549 4605664 complement(4046290..4047405) 1 NC_008700.1 KEGG: son:SO4413 hypothetical kynureninase; kynureninase 4047405 4605664 Sama_3417 Shewanella amazonensis SB2B kynureninase YP_929289.1 4046290 R 326297 CDS YP_929290.1 119776550 4605665 complement(4047402..4048580) 1 NC_008700.1 KEGG: son:SO4414 hypothetical protein; hypothetical protein 4048580 4605665 Sama_3418 Shewanella amazonensis SB2B hypothetical protein YP_929290.1 4047402 R 326297 CDS YP_929291.1 119776551 4605666 4048733..4049197 1 NC_008700.1 KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator 4049197 4605666 Sama_3419 Shewanella amazonensis SB2B AsnC family transcriptional regulator YP_929291.1 4048733 D 326297 CDS YP_929292.1 119776552 4605667 4049302..4049853 1 NC_008700.1 KEGG: hch:HCH_00993 hypothetical protein; hypothetical protein 4049853 4605667 Sama_3420 Shewanella amazonensis SB2B hypothetical protein YP_929292.1 4049302 D 326297 CDS YP_929293.1 119776553 4605668 4049872..4050498 1 NC_008700.1 KEGG: cjk:jk1275 peptidase E; peptidase E-like protein 4050498 4605668 Sama_3421 Shewanella amazonensis SB2B peptidase E-like protein YP_929293.1 4049872 D 326297 CDS YP_929294.1 119776554 4605669 4050719..4052848 1 NC_008700.1 KEGG: son:SO4465 hypothetical protein; hypothetical protein 4052848 4605669 Sama_3422 Shewanella amazonensis SB2B hypothetical protein YP_929294.1 4050719 D 326297 CDS YP_929295.1 119776555 4605670 complement(4053158..4054705) 1 NC_008700.1 KEGG: pha:PSHAa0989 transporter; transporter 4054705 4605670 Sama_3423 Shewanella amazonensis SB2B transporter YP_929295.1 4053158 R 326297 CDS YP_929296.1 119776556 4605671 4054922..4055230 1 NC_008700.1 KEGG: son:SO4467 hypothetical protein; hypothetical protein 4055230 4605671 Sama_3424 Shewanella amazonensis SB2B hypothetical protein YP_929296.1 4054922 D 326297 CDS YP_929297.1 119776557 4605672 4055332..4055868 1 NC_008700.1 KEGG: son:SO4470 hypothetical protein; hypothetical protein 4055868 4605672 Sama_3425 Shewanella amazonensis SB2B hypothetical protein YP_929297.1 4055332 D 326297 CDS YP_929298.1 119776558 4605673 4055995..4057041 1 NC_008700.1 KEGG: son:SO4471 nitrogen regulation protein; nitrogen regulation protein 4057041 4605673 Sama_3426 Shewanella amazonensis SB2B nitrogen regulation protein YP_929298.1 4055995 D 326297 CDS YP_929299.1 119776559 4605674 4057060..4058472 1 NC_008700.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); response regulator receiver protein 4058472 4605674 Sama_3427 Shewanella amazonensis SB2B response regulator receiver protein YP_929299.1 4057060 D 326297 CDS YP_929300.1 119776560 4605675 complement(4058538..4059083) 1 NC_008700.1 KEGG: son:SO4473 outer membrane protein, putative; outer membrane protein 4059083 4605675 Sama_3428 Shewanella amazonensis SB2B outer membrane protein YP_929300.1 4058538 R 326297 CDS YP_929301.1 119776561 4605676 complement(4059339..4059908) 1 NC_008700.1 KEGG: son:SO4473 outer membrane protein, putative; outer membrane protein 4059908 4605676 Sama_3429 Shewanella amazonensis SB2B outer membrane protein YP_929301.1 4059339 R 326297 CDS YP_929302.1 119776562 4605677 complement(4060090..4060959) 1 NC_008700.1 KEGG: son:SO4475 cation efflux family protein; cation efflux family protein 4060959 4605677 Sama_3430 Shewanella amazonensis SB2B cation efflux family protein YP_929302.1 4060090 R 326297 CDS YP_929303.1 119776563 4605678 complement(4061083..4061574) 1 NC_008700.1 KEGG: son:SO4476 spheroplast protein y precursor, putative; spheroplast protein y 4061574 4605678 Sama_3431 Shewanella amazonensis SB2B spheroplast protein y YP_929303.1 4061083 R 326297 CDS YP_929304.1 119776564 4605679 4061772..4062458 1 NC_008700.1 KEGG: sdn:Sden_3461 response regulator receiver; response regulator receiver protein 4062458 4605679 Sama_3432 Shewanella amazonensis SB2B response regulator receiver protein YP_929304.1 4061772 D 326297 CDS YP_929305.1 119776565 4605680 4062455..4063816 1 NC_008700.1 KEGG: son:SO4478 sensor protein CpxA; sensor protein CpxA 4063816 4605680 Sama_3433 Shewanella amazonensis SB2B sensor protein CpxA YP_929305.1 4062455 D 326297 CDS YP_929306.1 119776566 4605681 complement(4063864..4065672) 1 NC_008700.1 KEGG: son:SO4479 sigma-54 dependent transcriptional regulator; sigma-54 dependent transcriptional regulator 4065672 4605681 Sama_3434 Shewanella amazonensis SB2B sigma-54 dependent transcriptional regulator YP_929306.1 4063864 R 326297 CDS YP_929307.1 119776567 4605682 4065948..4067468 1 NC_008700.1 KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase 4067468 4605682 Sama_3435 Shewanella amazonensis SB2B aldehyde dehydrogenase YP_929307.1 4065948 D 326297 CDS YP_929308.1 119776568 4605683 4067618..4068661 1 NC_008700.1 KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 4068661 4605683 Sama_3436 Shewanella amazonensis SB2B hypothetical protein YP_929308.1 4067618 D 326297 CDS YP_929309.1 119776569 4605684 4068658..4069269 1 NC_008700.1 KEGG: sdn:Sden_2225 hypothetical protein; hypothetical protein 4069269 4605684 Sama_3437 Shewanella amazonensis SB2B hypothetical protein YP_929309.1 4068658 D 326297 CDS YP_929310.1 119776570 4605685 4069273..4069728 1 NC_008700.1 KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; isoquinoline 1-oxidoreductase subunit alpha 4069728 4605685 Sama_3438 Shewanella amazonensis SB2B isoquinoline 1-oxidoreductase subunit alpha YP_929310.1 4069273 D 326297 CDS YP_929311.1 119776571 4605686 4069725..4071977 1 NC_008700.1 KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; isoquinoline 1-oxidoreductase subunit beta 4071977 4605686 Sama_3439 Shewanella amazonensis SB2B isoquinoline 1-oxidoreductase subunit beta YP_929311.1 4069725 D 326297 CDS YP_929312.1 119776572 4605687 4072076..4072552 1 NC_008700.1 KEGG: sdn:Sden_3484 RNA methyltransferase TrmH, group 2; RNA methyl transferase TrmH 4072552 4605687 Sama_3440 Shewanella amazonensis SB2B RNA methyl transferase TrmH YP_929312.1 4072076 D 326297 CDS YP_929313.1 119776573 4605688 complement(4072559..4073062) 1 NC_008700.1 KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein 4073062 4605688 Sama_3441 Shewanella amazonensis SB2B hypothetical protein YP_929313.1 4072559 R 326297 CDS YP_929314.1 119776574 4605689 complement(4073079..4073654) 1 NC_008700.1 KEGG: dar:Daro_0041 hypothetical protein; hypothetical protein 4073654 4605689 Sama_3442 Shewanella amazonensis SB2B hypothetical protein YP_929314.1 4073079 R 326297 CDS YP_929315.1 119776575 4605690 complement(4073820..4075241) 1 NC_008700.1 KEGG: sdn:Sden_3485 peptidase M16-like protein; peptidase M16-like protein 4075241 4605690 Sama_3443 Shewanella amazonensis SB2B peptidase M16-like protein YP_929315.1 4073820 R 326297 CDS YP_929316.1 119776576 4605691 complement(4075238..4076569) 1 NC_008700.1 KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; hypothetical protein 4076569 4605691 Sama_3444 Shewanella amazonensis SB2B hypothetical protein YP_929316.1 4075238 R 326297 CDS YP_929317.1 119776577 4605692 complement(4076771..4077412) 1 NC_008700.1 KEGG: son:SO4550 methyltransferase domain protein; methyltransferase domain-containing protein 4077412 4605692 Sama_3445 Shewanella amazonensis SB2B methyltransferase domain-containing protein YP_929317.1 4076771 R 326297 CDS YP_929318.1 119776578 4605693 complement(4077409..4077759) 1 NC_008700.1 KEGG: son:SO4551 hypothetical protein; hypothetical protein 4077759 4605693 Sama_3446 Shewanella amazonensis SB2B hypothetical protein YP_929318.1 4077409 R 326297 CDS YP_929319.1 119776579 4605694 complement(4077855..4078484) 1 NC_008700.1 KEGG: son:SO4554 hypothetical protein; hypothetical protein 4078484 4605694 Sama_3447 Shewanella amazonensis SB2B hypothetical protein YP_929319.1 4077855 R 326297 CDS YP_929320.1 119776580 4605695 complement(4078575..4079777) 1 NC_008700.1 KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA family multidrug resistance transporter 4079777 4605695 Sama_3448 Shewanella amazonensis SB2B Bcr/CflA family multidrug resistance transporter YP_929320.1 4078575 R 326297 CDS YP_929321.1 119776581 4605696 4079887..4080867 1 NC_008700.1 KEGG: sdn:Sden_3495 regulatory protein, LysR; regulatory protein LysR 4080867 4605696 Sama_3449 Shewanella amazonensis SB2B regulatory protein LysR YP_929321.1 4079887 D 326297 CDS YP_929322.1 119776582 4605697 4080937..4081272 1 NC_008700.1 KEGG: son:SO4558 hypothetical protein; hypothetical protein 4081272 4605697 Sama_3450 Shewanella amazonensis SB2B hypothetical protein YP_929322.1 4080937 D 326297 CDS YP_929323.1 119776583 4605698 complement(4081288..4082715) 1 NC_008700.1 KEGG: son:SO4559 hypothetical protein; hypothetical protein 4082715 4605698 Sama_3451 Shewanella amazonensis SB2B hypothetical protein YP_929323.1 4081288 R 326297 CDS YP_929324.1 119776584 4605699 complement(4082728..4083429) 1 NC_008700.1 KEGG: son:SO4560 hypothetical protein; hypothetical protein 4083429 4605699 Sama_3452 Shewanella amazonensis SB2B hypothetical protein YP_929324.1 4082728 R 326297 CDS YP_929325.1 119776585 4605700 4083660..4084202 1 NC_008700.1 KEGG: son:SO4561 hypothetical protein; hypothetical protein 4084202 4605700 Sama_3453 Shewanella amazonensis SB2B hypothetical protein YP_929325.1 4083660 D 326297 CDS YP_929326.1 119776586 4605701 4084228..4084665 1 NC_008700.1 KEGG: son:SO4562 hypothetical protein; hypothetical protein 4084665 4605701 Sama_3454 Shewanella amazonensis SB2B hypothetical protein YP_929326.1 4084228 D 326297 CDS YP_929327.1 119776587 4605702 complement(4084662..4085486) 1 NC_008700.1 KEGG: son:SO4563 hypothetical protein; putative signal transduction protein 4085486 4605702 Sama_3455 Shewanella amazonensis SB2B putative signal transduction protein YP_929327.1 4084662 R 326297 CDS YP_929328.1 119776588 4605703 complement(4085549..4086304) 1 NC_008700.1 KEGG: cps:CPS_0687 hypothetical protein; hypothetical protein 4086304 4605703 Sama_3456 Shewanella amazonensis SB2B hypothetical protein YP_929328.1 4085549 R 326297 CDS YP_929329.1 119776589 4605704 4086479..4087087 1 NC_008700.1 KEGG: son:SO4564 TonB2 protein, putative; TonB2 protein 4087087 4605704 Sama_3457 Shewanella amazonensis SB2B TonB2 protein YP_929329.1 4086479 D 326297 CDS YP_929330.1 119776590 4605705 complement(4087084..4088340) 1 NC_008700.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4088340 4605705 Sama_3458 Shewanella amazonensis SB2B inner membrane protein YjeH YP_929330.1 4087084 R 326297 CDS YP_929331.1 119776591 4605706 4088507..4088938 1 NC_008700.1 KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4088938 4605706 Sama_3459 Shewanella amazonensis SB2B AsnC family transcriptional regulator YP_929331.1 4088507 D 326297 CDS YP_929332.1 119776592 4605707 4089221..4090939 1 NC_008700.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4090939 4605707 Sama_3460 Shewanella amazonensis SB2B 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_929332.1 4089221 D 326297 CDS YP_929333.1 119776593 4605708 4090921..4091754 1 NC_008700.1 KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 4091754 4605708 Sama_3461 Shewanella amazonensis SB2B alpha/beta fold family hydrolase YP_929333.1 4090921 D 326297 CDS YP_929334.1 119776594 4605709 4091747..4092850 1 NC_008700.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4092850 4605709 Sama_3462 Shewanella amazonensis SB2B O-succinylbenzoate synthase YP_929334.1 4091747 D 326297 CDS YP_929335.1 119776595 4605710 4092847..4094280 1 NC_008700.1 KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; O-succinylbenzoic acid--CoA ligase 4094280 4605710 Sama_3463 Shewanella amazonensis SB2B O-succinylbenzoic acid--CoA ligase YP_929335.1 4092847 D 326297 CDS YP_929336.1 119776596 4605711 complement(4094397..4094843) 1 NC_008700.1 KEGG: vch:VCA0275 IS1004 transposase; IS1004 transposase 4094843 4605711 Sama_3464 Shewanella amazonensis SB2B IS1004 transposase YP_929336.1 4094397 R 326297 CDS YP_929337.1 119776597 4605712 complement(4095007..4095864) 1 NC_008700.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4095864 4605712 Sama_3465 Shewanella amazonensis SB2B RNA polymerase factor sigma-32 YP_929337.1 4095007 R 326297 CDS YP_929338.1 119776598 4605713 complement(4096077..4097042) 1 NC_008700.1 KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; cell division ABC transporter permease FtsX 4097042 4605713 Sama_3466 Shewanella amazonensis SB2B cell division ABC transporter permease FtsX YP_929338.1 4096077 R 326297 CDS YP_929339.1 119776599 4605714 complement(4097052..4097741) 1 NC_008700.1 KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; cell division ABC transporter ATP-binding protein FtsE 4097741 4605714 Sama_3467 Shewanella amazonensis SB2B cell division ABC transporter ATP-binding protein FtsE YP_929339.1 4097052 R 326297 CDS YP_929340.1 119776600 4605715 complement(4097738..4099429) 1 NC_008700.1 KEGG: son:SO4586 cell division protein FtsY; cell division protein FtsY 4099429 4605715 Sama_3468 Shewanella amazonensis SB2B cell division protein FtsY YP_929340.1 4097738 R 326297 CDS YP_929341.1 119776601 4605716 4099544..4100173 1 NC_008700.1 KEGG: sdn:Sden_3506 conserved hypothetical protein 95; hypothetical protein 4100173 4605716 Sama_3469 Shewanella amazonensis SB2B hypothetical protein YP_929341.1 4099544 D 326297 CDS YP_929342.1 119776602 4605717 4100173..4100466 1 NC_008700.1 KEGG: son:SO4588 hypothetical protein; hypothetical protein 4100466 4605717 Sama_3470 Shewanella amazonensis SB2B hypothetical protein YP_929342.1 4100173 D 326297 CDS YP_929343.1 119776603 4605718 complement(4100553..4101116) 1 NC_008700.1 KEGG: son:SO4591 tetraheme cytochrome c; tetraheme cytochrome c 4101116 4605718 Sama_3471 Shewanella amazonensis SB2B tetraheme cytochrome c YP_929343.1 4100553 R 326297 CDS YP_929344.1 119776604 4605719 4101592..4102041 1 NC_008700.1 KEGG: son:SO4594 hypothetical protein; hypothetical protein 4102041 4605719 Sama_3472 Shewanella amazonensis SB2B hypothetical protein YP_929344.1 4101592 D 326297 CDS YP_929345.1 119776605 4605720 4102098..4102448 1 NC_008700.1 KEGG: son:SOA0155 hypothetical protein; hypothetical protein 4102448 4605720 Sama_3473 Shewanella amazonensis SB2B hypothetical protein YP_929345.1 4102098 D 326297 CDS YP_929346.1 119776606 4605721 4102477..4104057 1 NC_008700.1 KEGG: son:SO4597 heavy metal efflux system protein, putative; heavy metal efflux system protein 4104057 4605721 Sama_3474 Shewanella amazonensis SB2B heavy metal efflux system protein YP_929346.1 4102477 D 326297 CDS YP_929347.1 119776607 4605722 4104067..4107213 1 NC_008700.1 KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4107213 4605722 Sama_3475 Shewanella amazonensis SB2B CzcA family heavy metal efflux protein YP_929347.1 4104067 D 326297 CDS YP_929348.1 119776608 4605723 4107303..4108274 1 NC_008700.1 KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 family protein 4108274 4605723 Sama_3476 Shewanella amazonensis SB2B ribonuclease T2 family protein YP_929348.1 4107303 D 326297 CDS YP_929349.1 119776609 4605724 complement(4108295..4109071) 1 NC_008700.1 KEGG: sdn:Sden_3512 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4109071 4605724 Sama_3477 Shewanella amazonensis SB2B glyoxalase/bleomycin resistance protein/dioxygenase YP_929349.1 4108295 R 326297 CDS YP_929350.1 119776610 4605725 4109170..4109595 1 NC_008700.1 KEGG: cvi:CV2936 probable bacterial hemoglobin; putative hemoglobin 4109595 4605725 Sama_3478 Shewanella amazonensis SB2B putative hemoglobin YP_929350.1 4109170 D 326297 CDS YP_929351.1 119776611 4606028 complement(4109766..4111022) 1 NC_008700.1 KEGG: sdn:Sden_3513 aromatic amino acid transport protein; aromatic amino acid transport protein 4111022 4606028 Sama_3479 Shewanella amazonensis SB2B aromatic amino acid transport protein YP_929351.1 4109766 R 326297 CDS YP_929352.1 119776612 4605727 complement(4111022..4113445) 1 NC_008700.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4113445 4605727 Sama_3480 Shewanella amazonensis SB2B glycerol-3-phosphate acyltransferase YP_929352.1 4111022 R 326297 CDS YP_929353.1 119776613 4605728 4113597..4114220 1 NC_008700.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4114220 4605728 Sama_3481 Shewanella amazonensis SB2B LexA repressor YP_929353.1 4113597 D 326297 CDS YP_929354.1 119776614 4605729 4114217..4114723 1 NC_008700.1 KEGG: son:SO4604 hypothetical protein; hypothetical protein 4114723 4605729 Sama_3482 Shewanella amazonensis SB2B hypothetical protein YP_929354.1 4114217 D 326297 CDS YP_929355.1 119776615 4605730 4115112..4116674 1 NC_008700.1 KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4116674 4605730 Sama_3483 Shewanella amazonensis SB2B cytochrome c oxidase subunit II YP_929355.1 4115112 D 326297 CDS YP_929356.1 119776616 4605731 4116685..4118280 1 NC_008700.1 KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase 4118280 4605731 Sama_3484 Shewanella amazonensis SB2B cytochrome-c oxidase YP_929356.1 4116685 D 326297 CDS YP_929357.1 119776617 4605732 4118282..4118848 1 NC_008700.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4118848 4605732 Sama_3485 Shewanella amazonensis SB2B cytochrome C oxidase assembly protein YP_929357.1 4118282 D 326297 CDS YP_929358.1 119776618 4605733 4118845..4119720 1 NC_008700.1 KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 4119720 4605733 Sama_3486 Shewanella amazonensis SB2B cytochrome c oxidase subunit III YP_929358.1 4118845 D 326297 CDS YP_929359.1 119776619 4605734 complement(4119723..4119938) 1 NC_008700.1 KEGG: vvy:VVA1111 hypothetical protein; hypothetical protein 4119938 4605734 Sama_3487 Shewanella amazonensis SB2B hypothetical protein YP_929359.1 4119723 R 326297 CDS YP_929360.1 119776620 4605735 4119982..4120686 1 NC_008700.1 KEGG: sdn:Sden_3521 hypothetical protein; hypothetical protein 4120686 4605735 Sama_3488 Shewanella amazonensis SB2B hypothetical protein YP_929360.1 4119982 D 326297 CDS YP_929361.1 119776621 4605736 4120715..4121257 1 NC_008700.1 KEGG: son:SO4612 hypothetical protein; hypothetical protein 4121257 4605736 Sama_3489 Shewanella amazonensis SB2B hypothetical protein YP_929361.1 4120715 D 326297 CDS YP_929362.1 119776622 4605737 4121257..4122240 1 NC_008700.1 KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly 4122240 4605737 Sama_3490 Shewanella amazonensis SB2B cytochrome oxidase assembly YP_929362.1 4121257 D 326297 CDS YP_929363.1 119776623 4605738 4122255..4123154 1 NC_008700.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4123154 4605738 Sama_3491 Shewanella amazonensis SB2B protoheme IX farnesyltransferase YP_929363.1 4122255 D 326297 CDS YP_929364.1 119776624 4605739 4123163..4123798 1 NC_008700.1 KEGG: sdn:Sden_3525 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4123798 4605739 Sama_3492 Shewanella amazonensis SB2B electron transport protein SCO1/SenC YP_929364.1 4123163 D 326297 CDS YP_929365.1 119776625 4605740 4123967..4124248 1 NC_008700.1 hypothetical protein 4124248 4605740 Sama_3493 Shewanella amazonensis SB2B hypothetical protein YP_929365.1 4123967 D 326297 CDS YP_929366.1 119776626 4605741 4124263..4124625 1 NC_008700.1 KEGG: hch:HCH_00454 FOG: CheY-like receiver; response regulator receiver protein 4124625 4605741 Sama_3494 Shewanella amazonensis SB2B response regulator receiver protein YP_929366.1 4124263 D 326297 CDS YP_929367.1 119776627 4605742 4124645..4126732 1 NC_008700.1 KEGG: hch:HCH_00455 chemotaxis protein histidine kinase and related kinase; putative CheA signal transduction histidine kinase 4126732 4605742 Sama_3495 Shewanella amazonensis SB2B putative CheA signal transduction histidine kinase YP_929367.1 4124645 D 326297 CDS YP_929368.1 119776628 4605743 4126748..4127287 1 NC_008700.1 KEGG: sde:Sde_3106 biotin synthase; biotin synthase 4127287 4605743 Sama_3496 Shewanella amazonensis SB2B biotin synthase YP_929368.1 4126748 D 326297 CDS YP_929369.1 119776629 4605744 4127316..4129898 1 NC_008700.1 KEGG: cvi:CV3438 probable methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4129898 4605744 Sama_3497 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_929369.1 4127316 D 326297 CDS YP_929370.1 119776630 4605745 4130000..4130821 1 NC_008700.1 KEGG: sde:Sde_3104 biotin biosynthesis protein BioC; protein-glutamate O-methyltransferase 4130821 4605745 Sama_3498 Shewanella amazonensis SB2B protein-glutamate O-methyltransferase YP_929370.1 4130000 D 326297 CDS YP_929371.1 119776631 4605746 4130818..4131837 1 NC_008700.1 KEGG: xom:XOO_2714 glutamate methylesterase; protein-glutamate methylesterase 4131837 4605746 Sama_3499 Shewanella amazonensis SB2B protein-glutamate methylesterase YP_929371.1 4130818 D 326297 CDS YP_929372.1 119776632 4605747 complement(4131834..4132883) 1 NC_008700.1 KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase family protein 4132883 4605747 Sama_3500 Shewanella amazonensis SB2B polysaccharide deacetylase family protein YP_929372.1 4131834 R 326297 CDS YP_929373.1 119776633 4605748 4132918..4134231 1 NC_008700.1 KEGG: son:SO4617 DNA-damage-inducible protein F; DNA-damage-inducible protein F 4134231 4605748 Sama_3501 Shewanella amazonensis SB2B DNA-damage-inducible protein F YP_929373.1 4132918 D 326297 CDS YP_929374.1 119776634 4605749 complement(4134324..4134902) 1 NC_008700.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 4134902 4605749 Sama_3502 Shewanella amazonensis SB2B putative DNA uptake protein YP_929374.1 4134324 R 326297 CDS YP_929375.1 119776635 4605750 4135123..4137618 1 NC_008700.1 KEGG: pat:Patl_4232 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 4137618 4605750 Sama_3503 Shewanella amazonensis SB2B peptidase M14, carboxypeptidase A YP_929375.1 4135123 D 326297 CDS YP_929376.1 119776636 4605751 complement(4137615..4138367) 1 NC_008700.1 KEGG: son:SO4625 competence protein ComF; competence protein ComF 4138367 4605751 Sama_3504 Shewanella amazonensis SB2B competence protein ComF YP_929376.1 4137615 R 326297 CDS YP_929377.1 119776637 4605752 4138394..4139176 1 NC_008700.1 KEGG: son:SO4626 bioH protein; bioH protein 4139176 4605752 Sama_3505 Shewanella amazonensis SB2B bioH protein YP_929377.1 4138394 D 326297 CDS YP_929378.1 119776638 4605753 4139228..4139728 1 NC_008700.1 KEGG: son:SO4627 hypothetical protein; hypothetical protein 4139728 4605753 Sama_3506 Shewanella amazonensis SB2B hypothetical protein YP_929378.1 4139228 D 326297 CDS YP_929379.1 119776639 4605754 complement(4139729..4141669) 1 NC_008700.1 KEGG: son:SO4628 sulfatase; sulfatase 4141669 4605754 Sama_3507 Shewanella amazonensis SB2B sulfatase YP_929379.1 4139729 R 326297 CDS YP_929380.1 119776640 4605755 complement(4141835..4144171) 1 NC_008700.1 KEGG: son:SO4629 hypothetical protein; hypothetical protein 4144171 4605755 Sama_3508 Shewanella amazonensis SB2B hypothetical protein YP_929380.1 4141835 R 326297 CDS YP_929381.1 119776641 4605756 complement(4144296..4144793) 1 NC_008700.1 KEGG: son:SO4631 transcription elongation factor GreB; GreA/GreB family elongation factor 4144793 4605756 Sama_3509 Shewanella amazonensis SB2B GreA/GreB family elongation factor YP_929381.1 4144296 R 326297 CDS YP_929382.1 119776642 4605757 4144996..4145721 1 NC_008700.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4145721 ompR 4605757 ompR Shewanella amazonensis SB2B osmolarity response regulator YP_929382.1 4144996 D 326297 CDS YP_929383.1 119776643 4605758 4145737..4147053 1 NC_008700.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4147053 envZ 4605758 envZ Shewanella amazonensis SB2B osmolarity sensor protein YP_929383.1 4145737 D 326297 CDS YP_929384.1 119776644 4605759 4147122..4149065 1 NC_008700.1 KEGG: son:SO4635 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4149065 4605759 Sama_3512 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_929384.1 4147122 D 326297 CDS YP_929385.1 119776645 4605760 complement(4149078..4149551) 1 NC_008700.1 KEGG: son:SO4640 antioxidant, AhpC/Tsa family; anti-oxidant AhpCTSA family protein 4149551 4605760 Sama_3513 Shewanella amazonensis SB2B anti-oxidant AhpCTSA family protein YP_929385.1 4149078 R 326297 CDS YP_929386.1 119776646 4605761 complement(4149687..4149932) 1 NC_008700.1 hypothetical protein 4149932 4605761 Sama_3514 Shewanella amazonensis SB2B hypothetical protein YP_929386.1 4149687 R 326297 CDS YP_929387.1 119776647 4605762 4150159..4150623 1 NC_008700.1 KEGG: son:SO3697 steroid delta-isomerase domain protein; hypothetical protein 4150623 4605762 Sama_3515 Shewanella amazonensis SB2B hypothetical protein YP_929387.1 4150159 D 326297 CDS YP_929388.1 119776648 4605763 4150616..4151038 1 NC_008700.1 KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase; histone acetyltransferase HPA2/related acetyltransferase 4151038 4605763 Sama_3516 Shewanella amazonensis SB2B histone acetyltransferase HPA2/related acetyltransferase YP_929388.1 4150616 D 326297 CDS YP_929389.1 119776649 4605764 4151459..4152019 1 NC_008700.1 KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; ribosomal-protein-serine acetyltransferase 4152019 4605764 Sama_3517 Shewanella amazonensis SB2B ribosomal-protein-serine acetyltransferase YP_929389.1 4151459 D 326297 CDS YP_929390.1 119776650 4605765 4152140..4153018 1 NC_008700.1 KEGG: son:SO4458 carbohydrate kinase, PfkB family; carbohydrate kinase 4153018 4605765 Sama_3518 Shewanella amazonensis SB2B carbohydrate kinase YP_929390.1 4152140 D 326297 CDS YP_929391.1 119776651 4605766 4153209..4153766 1 NC_008700.1 KEGG: rba:RB2931 conserved hypothetical protein-putative acetyltransferase; acetyltransferase 4153766 4605766 Sama_3519 Shewanella amazonensis SB2B acetyltransferase YP_929391.1 4153209 D 326297 CDS YP_929392.1 119776652 4605767 4153803..4154492 1 NC_008700.1 KEGG: son:SO4456 hypothetical protein; hypothetical protein 4154492 4605767 Sama_3520 Shewanella amazonensis SB2B hypothetical protein YP_929392.1 4153803 D 326297 CDS YP_929393.1 119776653 4605768 complement(4154606..4154983) 1 NC_008700.1 hypothetical protein 4154983 4605768 Sama_3521 Shewanella amazonensis SB2B hypothetical protein YP_929393.1 4154606 R 326297 CDS YP_929394.1 119776654 4605769 complement(4155111..4157021) 1 NC_008700.1 KEGG: son:SO4454 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4157021 4605769 Sama_3522 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_929394.1 4155111 R 326297 CDS YP_929395.1 119776655 4605770 complement(4157301..4158953) 1 NC_008700.1 KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase 4158953 4605770 Sama_3523 Shewanella amazonensis SB2B electron-transferring-flavoprotein dehydrogenase YP_929395.1 4157301 R 326297 CDS YP_929396.1 119776656 4605771 4159269..4160291 1 NC_008700.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4160291 moaA 4605771 moaA Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein A YP_929396.1 4159269 D 326297 CDS YP_929397.1 119776657 4605772 4160346..4160882 1 NC_008700.1 KEGG: pat:Patl_2158 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 4160882 4605772 Sama_3525 Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein B YP_929397.1 4160346 D 326297 CDS YP_929398.1 119776658 4605773 4160879..4161352 1 NC_008700.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 4161352 moaC 4605773 moaC Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein MoaC YP_929398.1 4160879 D 326297 CDS YP_929399.1 119776659 4605774 4161358..4161609 1 NC_008700.1 KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdenum cofactor biosynthesis protein D 4161609 4605774 Sama_3527 Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein D YP_929399.1 4161358 D 326297 CDS YP_929400.1 119776660 4605775 4161611..4162069 1 NC_008700.1 KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdenum cofactor biosynthesis protein E 4162069 4605775 Sama_3528 Shewanella amazonensis SB2B molybdenum cofactor biosynthesis protein E YP_929400.1 4161611 D 326297 CDS YP_929401.1 119776661 4605776 4162093..4162881 1 NC_008700.1 KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter substrate-binding protein 4162881 4605776 Sama_3529 Shewanella amazonensis SB2B molybdenum ABC transporter substrate-binding protein YP_929401.1 4162093 D 326297 CDS YP_929402.1 119776662 4605777 4162881..4163558 1 NC_008700.1 KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdenum ABC transporter permease 4163558 4605777 Sama_3530 Shewanella amazonensis SB2B molybdenum ABC transporter permease YP_929402.1 4162881 D 326297 CDS YP_929403.1 119776663 4605778 4163542..4164654 1 NC_008700.1 KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; molybdenum ABC transporter ATP-binding protein 4164654 4605778 Sama_3531 Shewanella amazonensis SB2B molybdenum ABC transporter ATP-binding protein YP_929403.1 4163542 D 326297 CDS YP_929404.1 119776664 4605779 4164724..4165086 1 NC_008700.1 KEGG: pae:PA0320 hypothetical protein; hypothetical protein 4165086 4605779 Sama_3532 Shewanella amazonensis SB2B hypothetical protein YP_929404.1 4164724 D 326297 CDS YP_929405.1 119776665 4605780 4165127..4165651 1 NC_008700.1 KEGG: son:SO4429 hypothetical protein; hypothetical protein 4165651 4605780 Sama_3533 Shewanella amazonensis SB2B hypothetical protein YP_929405.1 4165127 D 326297 CDS YP_929406.1 119776666 4605781 4165671..4166348 1 NC_008700.1 KEGG: son:SO4428 DNA-binding response regulator; response regulator receiver protein 4166348 4605781 Sama_3534 Shewanella amazonensis SB2B response regulator receiver protein YP_929406.1 4165671 D 326297 CDS YP_929407.1 119776667 4605782 4166398..4167657 1 NC_008700.1 KEGG: son:SO4427 sensor histidine kinase; sensor histidine kinase 4167657 4605782 Sama_3535 Shewanella amazonensis SB2B sensor histidine kinase YP_929407.1 4166398 D 326297 CDS YP_929408.1 119776668 4605783 4167661..4168335 1 NC_008700.1 KEGG: sdn:Sden_0111 pseudouridine synthase RluA-like protein; pseudouridine synthase RluA-like protein 4168335 4605783 Sama_3536 Shewanella amazonensis SB2B pseudouridine synthase RluA-like protein YP_929408.1 4167661 D 326297 CDS YP_929409.1 119776669 4605784 complement(4168309..4169490) 1 NC_008700.1 KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase 4169490 4605784 Sama_3537 Shewanella amazonensis SB2B diguanylate cyclase YP_929409.1 4168309 R 326297 CDS YP_929410.1 119776670 4605785 4169634..4169801 1 NC_008700.1 KEGG: son:SO4423 hypothetical protein; hypothetical protein 4169801 4605785 Sama_3538 Shewanella amazonensis SB2B hypothetical protein YP_929410.1 4169634 D 326297 CDS YP_929411.1 119776671 4605786 4169943..4170797 1 NC_008700.1 KEGG: cps:CPS_2971 substrate-binding transcriptional regulator, LysR family; LysR family substrate binding transcriptional regulator 4170797 4605786 Sama_3539 Shewanella amazonensis SB2B LysR family substrate binding transcriptional regulator YP_929411.1 4169943 D 326297 CDS YP_929412.1 119776672 4605787 4170831..4173137 1 NC_008700.1 KEGG: pha:PSHAa0079 hydrolase; penicillin amidase 4173137 4605787 Sama_3540 Shewanella amazonensis SB2B penicillin amidase YP_929412.1 4170831 D 326297 CDS YP_929413.1 119776673 4605788 4173236..4174129 1 NC_008700.1 KEGG: csa:Csal_1778 pirin-like protein; pirin-like protein 4174129 4605788 Sama_3541 Shewanella amazonensis SB2B pirin-like protein YP_929413.1 4173236 D 326297 CDS YP_929414.1 119776674 4605789 complement(4174196..4174591) 1 NC_008700.1 KEGG: bja:blr0519 hypothetical protein; hypothetical protein 4174591 4605789 Sama_3542 Shewanella amazonensis SB2B hypothetical protein YP_929414.1 4174196 R 326297 CDS YP_929415.1 119776675 4605790 complement(4174690..4176045) 1 NC_008700.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4176045 4605790 Sama_3543 Shewanella amazonensis SB2B glutathione reductase YP_929415.1 4174690 R 326297 CDS YP_929416.1 119776676 4605791 complement(4176165..4176770) 1 NC_008700.1 KEGG: son:SO4701 hypothetical protein; hypothetical protein 4176770 4605791 Sama_3544 Shewanella amazonensis SB2B hypothetical protein YP_929416.1 4176165 R 326297 CDS YP_929417.1 119776677 4605792 complement(4176881..4177573) 1 NC_008700.1 KEGG: son:SO4700 hypothetical protein; hypothetical protein 4177573 4605792 Sama_3545 Shewanella amazonensis SB2B hypothetical protein YP_929417.1 4176881 R 326297 CDS YP_929418.1 119776678 4605793 4177877..4179913 1 NC_008700.1 KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 4179913 4605793 Sama_3546 Shewanella amazonensis SB2B oligopeptidase A YP_929418.1 4177877 D 326297 CDS YP_929419.1 119776679 4605794 4179990..4180583 1 NC_008700.1 KEGG: son:SO4698 hypothetical protein; hypothetical protein 4180583 4605794 Sama_3547 Shewanella amazonensis SB2B hypothetical protein YP_929419.1 4179990 D 326297 CDS YP_929420.1 119776680 4605795 complement(4180580..4181233) 1 NC_008700.1 KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase 4181233 4605795 Sama_3548 Shewanella amazonensis SB2B glutathione S-transferase YP_929420.1 4180580 R 326297 CDS YP_929421.1 119776681 4605796 complement(4181280..4182179) 1 NC_008700.1 KEGG: rsp:RSP_0927 transcriptional regulator, LyrR family; LyrR family transcriptional regulator 4182179 4605796 Sama_3549 Shewanella amazonensis SB2B LyrR family transcriptional regulator YP_929421.1 4181280 R 326297 CDS YP_929422.1 119776682 4605797 4182295..4183149 1 NC_008700.1 KEGG: hch:HCH_01282 predicted nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 4183149 4605797 Sama_3550 Shewanella amazonensis SB2B nucleoside-diphosphate-sugar epimerase YP_929422.1 4182295 D 326297 CDS YP_929423.1 119776683 4605798 4183196..4183882 1 NC_008700.1 KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 4183882 4605798 Sama_3551 Shewanella amazonensis SB2B 3-methyladenine DNA glycosylase YP_929423.1 4183196 D 326297 CDS YP_929424.1 119776684 4605799 complement(4183879..4184613) 1 NC_008700.1 KEGG: son:SO4694 hypothetical protein; hypothetical protein 4184613 4605799 Sama_3552 Shewanella amazonensis SB2B hypothetical protein YP_929424.1 4183879 R 326297 CDS YP_929425.1 119776685 4605800 4184976..4186112 1 NC_008700.1 KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; multidrug resistance protein AcrA/AcrE family 4186112 4605800 Sama_3553 Shewanella amazonensis SB2B multidrug resistance protein AcrA/AcrE family YP_929425.1 4184976 D 326297 CDS YP_929426.1 119776686 4605801 4186156..4189296 1 NC_008700.1 KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; AcrB/AcrD/AcrF family protein 4189296 4605801 Sama_3554 Shewanella amazonensis SB2B AcrB/AcrD/AcrF family protein YP_929426.1 4186156 D 326297 CDS YP_929427.1 119776687 4605802 complement(4189384..4189680) 1 NC_008700.1 hypothetical protein 4189680 4605802 Sama_3555 Shewanella amazonensis SB2B hypothetical protein YP_929427.1 4189384 R 326297 CDS YP_929428.1 119776688 4605803 complement(4190239..4191237) 1 NC_008700.1 KEGG: son:SO4661 hypothetical protein; hypothetical protein 4191237 4605803 Sama_3556 Shewanella amazonensis SB2B hypothetical protein YP_929428.1 4190239 R 326297 CDS YP_929429.1 119776689 4605804 complement(4191291..4191740) 1 NC_008700.1 KEGG: eca:ECA0873 hypothetical protein; hypothetical protein 4191740 4605804 Sama_3557 Shewanella amazonensis SB2B hypothetical protein YP_929429.1 4191291 R 326297 CDS YP_929430.1 119776690 4605805 4192005..4193357 1 NC_008700.1 KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 4193357 4605805 Sama_3558 Shewanella amazonensis SB2B peptidase S8/S53 subtilisin kexin sedolisin YP_929430.1 4192005 D 326297 CDS YP_929431.1 119776691 4605806 complement(4193424..4195031) 1 NC_008700.1 KEGG: ppr:PBPRA0142 putative efflux pump component MtrF; putative efflux pump component MtrF 4195031 4605806 Sama_3559 Shewanella amazonensis SB2B putative efflux pump component MtrF YP_929431.1 4193424 R 326297 CDS YP_929432.1 119776692 4605807 4195668..4196237 1 NC_008700.1 KEGG: son:SO4662 lemA protein; hypothetical protein 4196237 4605807 Sama_3560 Shewanella amazonensis SB2B hypothetical protein YP_929432.1 4195668 D 326297 CDS YP_929433.1 119776693 4605808 4196242..4197258 1 NC_008700.1 KEGG: son:SO4661 hypothetical protein; hypothetical protein 4197258 4605808 Sama_3561 Shewanella amazonensis SB2B hypothetical protein YP_929433.1 4196242 D 326297 CDS YP_929434.1 119776694 4605809 4197258..4197938 1 NC_008700.1 KEGG: son:SO4660 transglycosylase SLT domain protein; transglycosylase 4197938 4605809 Sama_3562 Shewanella amazonensis SB2B transglycosylase YP_929434.1 4197258 D 326297 CDS YP_929435.1 119776695 4605810 complement(4198047..4198901) 1 NC_008700.1 KEGG: son:SO4659 hypothetical protein; hypothetical protein 4198901 4605810 Sama_3563 Shewanella amazonensis SB2B hypothetical protein YP_929435.1 4198047 R 326297 CDS YP_929436.1 119776696 4605811 4199036..4199782 1 NC_008700.1 KEGG: sdn:Sden_3610 protein of unknown function DUF548; hypothetical protein 4199782 4605811 Sama_3564 Shewanella amazonensis SB2B hypothetical protein YP_929436.1 4199036 D 326297 CDS YP_929437.1 119776697 4605812 complement(4199788..4200663) 1 NC_008700.1 KEGG: vvu:VV20326 permease of the drug/metabolite transporter (DMT) superfamily; DMT family permease 4200663 4605812 Sama_3565 Shewanella amazonensis SB2B DMT family permease YP_929437.1 4199788 R 326297 CDS YP_929438.1 119776698 4605813 4200761..4201255 1 NC_008700.1 KEGG: vpa:VP1763 transcriptional regulator, MarR family; MarR family transcriptional regulator 4201255 4605813 Sama_3566 Shewanella amazonensis SB2B MarR family transcriptional regulator YP_929438.1 4200761 D 326297 CDS YP_929439.1 119776699 4605814 complement(4202259..4202561) 1 NC_008700.1 KEGG: cps:CPS_0172 hypothetical protein; hypothetical protein 4202561 4605814 Sama_3567 Shewanella amazonensis SB2B hypothetical protein YP_929439.1 4202259 R 326297 CDS YP_929440.1 119776700 4605815 complement(4202644..4203390) 1 NC_008700.1 KEGG: son:SO0736 conserved hypothetical protein; hypothetical protein 4203390 4605815 Sama_3568 Shewanella amazonensis SB2B hypothetical protein YP_929440.1 4202644 R 326297 CDS YP_929441.1 119776701 4605816 4203638..4205821 1 NC_008700.1 KEGG: sdn:Sden_0824 protein of unknown function DUF181; hypothetical protein 4205821 4605816 Sama_3569 Shewanella amazonensis SB2B hypothetical protein YP_929441.1 4203638 D 326297 CDS YP_929442.1 119776702 4605817 complement(4205962..4206360) 1 NC_008700.1 KEGG: sdn:Sden_0073 thioesterase superfamily; thioesterase superfamily protein 4206360 4605817 Sama_3570 Shewanella amazonensis SB2B thioesterase superfamily protein YP_929442.1 4205962 R 326297 CDS YP_929443.1 119776703 4605818 complement(4206476..4208269) 1 NC_008700.1 KEGG: son:SO0075 AMP-binding family protein; AMP-binding family protein 4208269 4605818 Sama_3571 Shewanella amazonensis SB2B AMP-binding family protein YP_929443.1 4206476 R 326297 CDS YP_929444.1 119776704 4605819 complement(4208449..4209690) 1 NC_008700.1 KEGG: son:SO0074 hypothetical protein; hypothetical protein 4209690 4605819 Sama_3572 Shewanella amazonensis SB2B hypothetical protein YP_929444.1 4208449 R 326297 CDS YP_929445.1 119776705 4605820 complement(4209687..4210541) 1 NC_008700.1 KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 4210541 4605820 Sama_3573 Shewanella amazonensis SB2B ABC transporter ATP-binding protein YP_929445.1 4209687 R 326297 CDS YP_929446.1 119776706 4605821 complement(4210552..4210923) 1 NC_008700.1 KEGG: son:SO0072 transcriptional regulator, GntR family; GntR family transcriptional regulator 4210923 4605821 Sama_3574 Shewanella amazonensis SB2B GntR family transcriptional regulator YP_929446.1 4210552 R 326297 CDS YP_929447.1 119776707 4605822 4211013..4212536 1 NC_008700.1 KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; alpha/beta fold family hydrolase 4212536 4605822 Sama_3575 Shewanella amazonensis SB2B alpha/beta fold family hydrolase YP_929447.1 4211013 D 326297 CDS YP_929448.1 119776708 4605823 4212540..4213274 1 NC_008700.1 KEGG: son:SO0070 ATP-binding transport protein NatA; ATP-binding transport protein NatA 4213274 4605823 Sama_3576 Shewanella amazonensis SB2B ATP-binding transport protein NatA YP_929448.1 4212540 D 326297 CDS YP_929449.1 119776709 4605824 4213271..4214407 1 NC_008700.1 KEGG: son:SO0069 transport protein, putative; transporter 4214407 4605824 Sama_3577 Shewanella amazonensis SB2B transporter YP_929449.1 4213271 D 326297 CDS YP_929450.1 119776710 4605825 4214486..4214698 1 NC_008700.1 hypothetical protein 4214698 4605825 Sama_3578 Shewanella amazonensis SB2B hypothetical protein YP_929450.1 4214486 D 326297 CDS YP_929451.1 119776711 4605826 4214776..4215063 1 NC_008700.1 hypothetical protein 4215063 4605826 Sama_3579 Shewanella amazonensis SB2B hypothetical protein YP_929451.1 4214776 D 326297 CDS YP_929452.1 119776712 4605827 4215225..4215650 1 NC_008700.1 KEGG: hch:HCH_00041 molecular chaperone (small heat shock protein); molecular chaperone 4215650 4605827 Sama_3580 Shewanella amazonensis SB2B molecular chaperone YP_929452.1 4215225 D 326297 CDS YP_929453.1 119776713 4605828 4216162..4217100 1 NC_008700.1 KEGG: son:SO0928 GGDEF domain protein protein; diguanylate cyclase 4217100 4605828 Sama_3581 Shewanella amazonensis SB2B diguanylate cyclase YP_929453.1 4216162 D 326297 CDS YP_929454.1 119776714 4605829 complement(4217119..4217526) 1 NC_008700.1 KEGG: pat:Patl_2820 hypothetical protein; hypothetical protein 4217526 4605829 Sama_3582 Shewanella amazonensis SB2B hypothetical protein YP_929454.1 4217119 R 326297 CDS YP_929455.1 119776715 4605830 4217714..4218046 1 NC_008700.1 KEGG: shm:Shewmr7_0578 thioredoxin domain; thioredoxin domain-containing protein 4218046 4605830 Sama_3583 Shewanella amazonensis SB2B thioredoxin domain-containing protein YP_929455.1 4217714 D 326297 CDS YP_929456.1 119776716 4605831 complement(4218117..4218443) 1 NC_008700.1 hypothetical protein 4218443 4605831 Sama_3584 Shewanella amazonensis SB2B hypothetical protein YP_929456.1 4218117 R 326297 CDS YP_929457.1 119776717 4605832 4218654..4218965 1 NC_008700.1 KEGG: sdn:Sden_2842 hypothetical protein; hypothetical protein 4218965 4605832 Sama_3585 Shewanella amazonensis SB2B hypothetical protein YP_929457.1 4218654 D 326297 CDS YP_929458.1 119776718 4605833 complement(4219015..4219620) 1 NC_008700.1 KEGG: hch:HCH_01941 predicted membrane protein; membrane protein 4219620 4605833 Sama_3586 Shewanella amazonensis SB2B membrane protein YP_929458.1 4219015 R 326297 CDS YP_929459.1 119776719 4605834 complement(4219699..4220826) 1 NC_008700.1 KEGG: son:SO1707 ABC transporter, permease protein, putative; ABC transporter permease 4220826 4605834 Sama_3587 Shewanella amazonensis SB2B ABC transporter permease YP_929459.1 4219699 R 326297 CDS YP_929460.1 119776720 4605835 complement(4220816..4221784) 1 NC_008700.1 KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component; putative multidrug ABC transporter, ATPase 4221784 4605835 Sama_3588 Shewanella amazonensis SB2B putative multidrug ABC transporter, ATPase YP_929460.1 4220816 R 326297 CDS YP_929461.1 119776721 4605836 complement(4221777..4222739) 1 NC_008700.1 KEGG: son:SO1705 putative HlyD family secretion protein; HlyD family secretion protein 4222739 4605836 Sama_3589 Shewanella amazonensis SB2B HlyD family secretion protein YP_929461.1 4221777 R 326297 CDS YP_929462.1 119776722 4605837 complement(4222736..4223377) 1 NC_008700.1 KEGG: vvy:VVA0159 transcriptional regulator; TetR family transcriptional regulator 4223377 4605837 Sama_3590 Shewanella amazonensis SB2B TetR family transcriptional regulator YP_929462.1 4222736 R 326297 CDS YP_929463.1 119776723 4605838 4223587..4223886 1 NC_008700.1 hypothetical protein 4223886 4605838 Sama_3591 Shewanella amazonensis SB2B hypothetical protein YP_929463.1 4223587 D 326297 CDS YP_929464.1 119776724 4605839 complement(4223925..4224677) 1 NC_008700.1 KEGG: son:SO3975 hypothetical protein; hypothetical protein 4224677 4605839 Sama_3592 Shewanella amazonensis SB2B hypothetical protein YP_929464.1 4223925 R 326297 CDS YP_929465.1 119776725 4605840 complement(4224835..4225863) 1 NC_008700.1 KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family; AraC family transcriptional regulator 4225863 4605840 Sama_3593 Shewanella amazonensis SB2B AraC family transcriptional regulator YP_929465.1 4224835 R 326297 CDS YP_929466.1 119776726 4605841 complement(4226151..4227281) 1 NC_008700.1 KEGG: hch:HCH_03702 response regulator containing a CheY-like receiver domain and an HD-GYP domain; response regulator receiver protein 4227281 4605841 Sama_3594 Shewanella amazonensis SB2B response regulator receiver protein YP_929466.1 4226151 R 326297 CDS YP_929467.1 119776727 4605842 complement(4227281..4227877) 1 NC_008700.1 KEGG: dde:Dde_1943 histidine kinase; histidine kinase 4227877 4605842 Sama_3595 Shewanella amazonensis SB2B histidine kinase YP_929467.1 4227281 R 326297 CDS YP_929468.1 119776728 4605843 4228104..4230842 1 NC_008700.1 KEGG: sde:Sde_1689 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 4230842 4605843 Sama_3596 Shewanella amazonensis SB2B pseudouridine synthase, Rsu YP_929468.1 4228104 D 326297 CDS YP_929469.1 119776729 4605844 4231044..4231457 1 NC_008700.1 KEGG: vpa:VP1790 hypothetical protein; hypothetical protein 4231457 4605844 Sama_3597 Shewanella amazonensis SB2B hypothetical protein YP_929469.1 4231044 D 326297 CDS YP_929470.1 119776730 4605845 complement(4231474..4232712) 1 NC_008700.1 KEGG: vvy:VV1004 methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis sensory transducer 4232712 4605845 Sama_3598 Shewanella amazonensis SB2B putative methyl-accepting chemotaxis sensory transducer YP_929470.1 4231474 R 326297 CDS YP_929471.1 119776731 4605846 4232852..4233490 1 NC_008700.1 KEGG: pat:Patl_3840 abortive infection protein; abortive infection protein 4233490 4605846 Sama_3599 Shewanella amazonensis SB2B abortive infection protein YP_929471.1 4232852 D 326297 CDS YP_929472.1 119776732 4605847 complement(4233484..4234992) 1 NC_008700.1 KEGG: pca:Pcar_2937 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; putative diguanylate phosphodiesterase 4234992 4605847 Sama_3600 Shewanella amazonensis SB2B putative diguanylate phosphodiesterase YP_929472.1 4233484 R 326297 CDS YP_929473.1 119776733 4605848 complement(4235209..4235808) 1 NC_008700.1 KEGG: sdn:Sden_2490 pentapeptide repeat; pentapeptide repeat-containing protein 4235808 4605848 Sama_3601 Shewanella amazonensis SB2B pentapeptide repeat-containing protein YP_929473.1 4235209 R 326297 CDS YP_929474.1 119776734 4605849 4236104..4238020 1 NC_008700.1 hypothetical protein 4238020 4605849 Sama_3602 Shewanella amazonensis SB2B hypothetical protein YP_929474.1 4236104 D 326297 CDS YP_929475.1 119776735 4605850 4238369..4240294 1 NC_008700.1 KEGG: bba:Bd3766 hypothetical protein; diguanylate cyclase 4240294 4605850 Sama_3603 Shewanella amazonensis SB2B diguanylate cyclase YP_929475.1 4238369 D 326297 CDS YP_929476.1 119776736 4605851 complement(4240343..4241677) 1 NC_008700.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4241677 4605851 Sama_3604 Shewanella amazonensis SB2B coproporphyrinogen III oxidase YP_929476.1 4240343 R 326297 CDS YP_929477.1 119776737 4605852 complement(4242055..4242993) 1 NC_008700.1 KEGG: rru:Rru_A0785 transcriptional regulator, LysR family; LysR family transcriptional regulator 4242993 4605852 Sama_3605 Shewanella amazonensis SB2B LysR family transcriptional regulator YP_929477.1 4242055 R 326297 CDS YP_929478.1 119776738 4605853 4243116..4244534 1 NC_008700.1 KEGG: bcz:BCZK0297 aminotransferase, class III; probable 4-aminobutyrate aminotransferase; aminotransferase, class III; 4-aminobutyrate aminotransferase 4244534 4605853 Sama_3606 Shewanella amazonensis SB2B aminotransferase, class III; 4-aminobutyrate aminotransferase YP_929478.1 4243116 D 326297 CDS YP_929479.1 119776739 4605854 complement(4245135..4246106) 1 NC_008700.1 KEGG: son:SO4515 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit C 4246106 4605854 Sama_3607 Shewanella amazonensis SB2B formate dehydrogenase subunit C YP_929479.1 4245135 R 326297 CDS YP_929480.1 119776740 4605855 complement(4246151..4246720) 1 NC_008700.1 KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit; formate dehydrogenase, iron-sulfur subunit 4246720 4605855 Sama_3608 Shewanella amazonensis SB2B formate dehydrogenase, iron-sulfur subunit YP_929480.1 4246151 R 326297 CDS YP_929481.1 119776741 4605856 complement(4246748..4249600) 1 NC_008700.1 KEGG: son:SO4513 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4249600 4605856 Sama_3609 Shewanella amazonensis SB2B formate dehydrogenase subunit alpha YP_929481.1 4246748 R 326297 CDS YP_929482.1 119776742 4605857 complement(4249613..4249807) 1 NC_008700.1 KEGG: son:SO4512 hypothetical protein; hypothetical protein 4249807 4605857 Sama_3610 Shewanella amazonensis SB2B hypothetical protein YP_929482.1 4249613 R 326297 CDS YP_929483.1 119776743 4605858 complement(4250629..4251645) 1 NC_008700.1 KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit C 4251645 4605858 Sama_3611 Shewanella amazonensis SB2B formate dehydrogenase subunit C YP_929483.1 4250629 R 326297 CDS YP_929484.1 119776744 4605859 complement(4251705..4252301) 1 NC_008700.1 KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; formate dehydrogenase, iron-sulfur subunit 4252301 4605859 Sama_3612 Shewanella amazonensis SB2B formate dehydrogenase, iron-sulfur subunit YP_929484.1 4251705 R 326297 CDS YP_929485.1 119776745 4605860 complement(4252329..4255178) 1 NC_008700.1 KEGG: son:SO4509 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4255178 4605860 Sama_3613 Shewanella amazonensis SB2B formate dehydrogenase subunit alpha YP_929485.1 4252329 R 326297 CDS YP_929486.1 119776746 4605861 complement(4255209..4255403) 1 NC_008700.1 KEGG: son:SO4508 hypothetical protein; hypothetical protein 4255403 4605861 Sama_3614 Shewanella amazonensis SB2B hypothetical protein YP_929486.1 4255209 R 326297 CDS YP_929487.1 119776747 4605862 complement(4255493..4256158) 1 NC_008700.1 KEGG: son:SO4507 TorA specific chaperone, putative; TorA specific chaperone 4256158 4605862 Sama_3615 Shewanella amazonensis SB2B TorA specific chaperone YP_929487.1 4255493 R 326297 CDS YP_929488.1 119776748 4605863 complement(4256169..4257911) 1 NC_008700.1 KEGG: son:SO4506 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 4257911 4605863 Sama_3616 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_929488.1 4256169 R 326297 CDS YP_929489.1 119776749 4605864 complement(4257967..4258611) 1 NC_008700.1 KEGG: son:SO4505 hypothetical protein; hypothetical protein 4258611 4605864 Sama_3617 Shewanella amazonensis SB2B hypothetical protein YP_929489.1 4257967 R 326297 CDS YP_929490.1 119776750 4605865 complement(4258611..4259069) 1 NC_008700.1 KEGG: son:SO4504 hypothetical protein; hypothetical protein 4259069 4605865 Sama_3618 Shewanella amazonensis SB2B hypothetical protein YP_929490.1 4258611 R 326297 CDS YP_929491.1 119776751 4605866 4259347..4260195 1 NC_008700.1 KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase accessory protein FdhD 4260195 4605866 Sama_3619 Shewanella amazonensis SB2B formate dehydrogenase accessory protein FdhD YP_929491.1 4259347 D 326297 CDS YP_929492.1 119776752 4605867 4260195..4261103 1 NC_008700.1 KEGG: son:SO4502 hypothetical protein; hypothetical protein 4261103 4605867 Sama_3620 Shewanella amazonensis SB2B hypothetical protein YP_929492.1 4260195 D 326297 CDS YP_929493.1 119776753 4605868 complement(4261104..4262063) 1 NC_008700.1 KEGG: sdn:Sden_0097 protein of unknown function DUF890; putative SAM-dependent methyltransferase 4262063 4605868 Sama_3621 Shewanella amazonensis SB2B putative SAM-dependent methyltransferase YP_929493.1 4261104 R 326297 CDS YP_929494.1 119776754 4605869 complement(4262083..4262484) 1 NC_008700.1 KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein 4262484 4605869 Sama_3622 Shewanella amazonensis SB2B flagellar basal body-associated protein FliL-like protein YP_929494.1 4262083 R 326297 CDS YP_929495.1 119776755 4605870 4262595..4263158 1 NC_008700.1 KEGG: son:SO0131 putative chorismate--pyruvate lyase; putative chorismate--pyruvate lyase 4263158 4605870 Sama_3623 Shewanella amazonensis SB2B putative chorismate--pyruvate lyase YP_929495.1 4262595 D 326297 CDS YP_929496.1 119776756 4605871 complement(4263188..4266004) 1 NC_008700.1 KEGG: son:SO0130 protease, putative; protease 4266004 4605871 Sama_3624 Shewanella amazonensis SB2B protease YP_929496.1 4263188 R 326297 CDS YP_929497.1 119776757 4605872 complement(4266240..4268393) 1 NC_008700.1 KEGG: cpr:CPR_0360 cell wall surface anchor family protein; cell wall surface anchor family protein 4268393 4605872 Sama_3625 Shewanella amazonensis SB2B cell wall surface anchor family protein YP_929497.1 4266240 R 326297 CDS YP_929498.1 119776758 4605873 complement(4268462..4269058) 1 NC_008700.1 KEGG: sdn:Sden_0092 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 4269058 4605873 Sama_3626 Shewanella amazonensis SB2B multiple antibiotic resistance (MarC)-like protein YP_929498.1 4268462 R 326297 CDS YP_929499.1 119776759 4605874 complement(4269142..4271271) 1 NC_008700.1 KEGG: tcx:Tcr_1222 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); signal transduction protein 4271271 4605874 Sama_3627 Shewanella amazonensis SB2B signal transduction protein YP_929499.1 4269142 R 326297 CDS YP_929500.1 119776760 4605875 4271577..4273184 1 NC_008700.1 KEGG: sdn:Sden_0091 hypothetical protein; hypothetical protein 4273184 4605875 Sama_3628 Shewanella amazonensis SB2B hypothetical protein YP_929500.1 4271577 D 326297 CDS YP_929501.1 119776761 4605876 4273257..4274018 1 NC_008700.1 KEGG: son:SO0126 hypothetical protein; hypothetical protein 4274018 4605876 Sama_3629 Shewanella amazonensis SB2B hypothetical protein YP_929501.1 4273257 D 326297 CDS YP_929502.1 119776762 4605877 4274062..4274613 1 NC_008700.1 KEGG: son:SO0123 acyltransferase family protein; acyltransferase family protein 4274613 4605877 Sama_3630 Shewanella amazonensis SB2B acyltransferase family protein YP_929502.1 4274062 D 326297 CDS YP_929503.1 119776763 4605878 4274700..4275323 1 NC_008700.1 KEGG: son:SO0122 transporter, LysE family; amino acid transporter LysE 4275323 4605878 Sama_3631 Shewanella amazonensis SB2B amino acid transporter LysE YP_929503.1 4274700 D 326297 CDS YP_929504.1 119776764 4605879 complement(4275313..4276494) 1 NC_008700.1 KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; putative small-conductance mechanosensitive channel 4276494 4605879 Sama_3632 Shewanella amazonensis SB2B putative small-conductance mechanosensitive channel YP_929504.1 4275313 R 326297 CDS YP_929505.1 119776765 4606032 complement(4282602..4284026) 1 NC_008700.1 KEGG: son:SO4737 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 4284026 4606032 Sama_3633 Shewanella amazonensis SB2B iron-sulfur cluster-binding protein YP_929505.1 4282602 R 326297 CDS YP_929506.1 119776766 4605881 4284116..4284466 1 NC_008700.1 KEGG: son:SO4738 hypothetical protein; hypothetical protein 4284466 4605881 Sama_3634 Shewanella amazonensis SB2B hypothetical protein YP_929506.1 4284116 D 326297 CDS YP_929507.1 119776767 4605882 4284569..4285471 1 NC_008700.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4285471 4605882 Sama_3635 Shewanella amazonensis SB2B naphthoate synthase YP_929507.1 4284569 D 326297 CDS YP_929508.1 119776768 4605883 4285619..4285816 1 NC_008700.1 KEGG: son:SO4740 hypothetical protein; hypothetical protein 4285816 4605883 Sama_3636 Shewanella amazonensis SB2B hypothetical protein YP_929508.1 4285619 D 326297 CDS YP_929509.1 119776769 4605884 complement(4285863..4287299) 1 NC_008700.1 KEGG: sco:SCO6595 secreted protein; hypothetical protein 4287299 4605884 Sama_3637 Shewanella amazonensis SB2B hypothetical protein YP_929509.1 4285863 R 326297 CDS YP_929510.1 119776770 4605885 complement(4287302..4287526) 1 NC_008700.1 hypothetical protein 4287526 4605885 Sama_3638 Shewanella amazonensis SB2B hypothetical protein YP_929510.1 4287302 R 326297 CDS YP_929511.1 119776771 4605886 complement(4287696..4289525) 1 NC_008700.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4289525 4605886 Sama_3639 Shewanella amazonensis SB2B glucosamine--fructose-6-phosphate aminotransferase YP_929511.1 4287696 R 326297 CDS YP_929512.1 119776772 4605887 complement(4289558..4290322) 1 NC_008700.1 KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4290322 4605887 Sama_3640 Shewanella amazonensis SB2B DeoR family transcriptional regulator YP_929512.1 4289558 R 326297 CDS YP_929513.1 119776773 4605888 complement(4290466..4292559) 1 NC_008700.1 KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent receptor 4292559 4605888 Sama_3641 Shewanella amazonensis SB2B TonB-dependent receptor YP_929513.1 4290466 R 326297 CDS YP_929514.1 119776774 4605889 complement(4292739..4294103) 1 NC_008700.1 KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine diphosphorylase 4294103 4605889 Sama_3642 Shewanella amazonensis SB2B UDP-N-acetylglucosamine diphosphorylase YP_929514.1 4292739 R 326297 CDS YP_929515.1 119776775 4605890 complement(4294240..4294665) 1 NC_008700.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4294665 atpC 4605890 atpC Shewanella amazonensis SB2B F0F1 ATP synthase subunit epsilon YP_929515.1 4294240 R 326297 CDS YP_929516.1 119776776 4605891 complement(4294701..4296089) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4296089 4605891 Sama_3644 Shewanella amazonensis SB2B F0F1 ATP synthase subunit beta YP_929516.1 4294701 R 326297 CDS YP_929517.1 119776777 4605892 complement(4296127..4296987) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4296987 4605892 Sama_3645 Shewanella amazonensis SB2B F0F1 ATP synthase subunit gamma YP_929517.1 4296127 R 326297 CDS YP_929518.1 119776778 4605893 complement(4297038..4298579) 1 NC_008700.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4298579 4605893 Sama_3646 Shewanella amazonensis SB2B F0F1 ATP synthase subunit alpha YP_929518.1 4297038 R 326297 CDS YP_929519.1 119776779 4605894 complement(4298594..4299127) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4299127 4605894 Sama_3647 Shewanella amazonensis SB2B F0F1 ATP synthase subunit delta YP_929519.1 4298594 R 326297 CDS YP_929520.1 119776780 4605895 complement(4299143..4299613) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4299613 4605895 Sama_3648 Shewanella amazonensis SB2B F0F1 ATP synthase subunit B YP_929520.1 4299143 R 326297 CDS YP_929521.1 119776781 4605896 complement(4299653..4299904) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4299904 4605896 Sama_3649 Shewanella amazonensis SB2B F0F1 ATP synthase subunit C YP_929521.1 4299653 R 326297 CDS YP_929522.1 119776782 4605897 complement(4299972..4300766) 1 NC_008700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4300766 4605897 Sama_3650 Shewanella amazonensis SB2B F0F1 ATP synthase subunit A YP_929522.1 4299972 R 326297 CDS YP_929523.1 119776783 4605898 complement(4300780..4301163) 1 NC_008700.1 KEGG: son:SO4754 ATP synthase protein I; ATP synthase protein I 4301163 4605898 Sama_3651 Shewanella amazonensis SB2B ATP synthase protein I YP_929523.1 4300780 R 326297 CDS YP_929524.1 119776784 4605899 complement(4301388..4302266) 1 NC_008700.1 KEGG: son:SO4755 ParB family protein; ParB family protein 4302266 4605899 Sama_3652 Shewanella amazonensis SB2B ParB family protein YP_929524.1 4301388 R 326297 CDS YP_929525.1 119776785 4605900 complement(4302276..4303064) 1 NC_008700.1 KEGG: son:SO4756 ParA family protein; ParA family protein 4303064 4605900 Sama_3653 Shewanella amazonensis SB2B ParA family protein YP_929525.1 4302276 R 326297 CDS YP_929526.1 119776786 4605901 complement(4303155..4303775) 1 NC_008700.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4303775 gidB 4605901 gidB Shewanella amazonensis SB2B 16S rRNA methyltransferase GidB YP_929526.1 4303155 R 326297 CDS YP_929527.1 119776787 4605902 complement(4303877..4305766) 1 NC_008700.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4305766 4605902 Sama_3655 Shewanella amazonensis SB2B tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_929527.1 4303877 R 326297 CDS