-- dump date 20140620_055647 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 990282000001 SEQ_END SEQ_END NC_016863.1 4817868 4817868 DR NC_016863.1; contig end 4817868..4817868 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 990282000002 SEQ_END SEQ_END NC_016864.1 93277 93277 DR NC_016864.1; contig end 93277..93277 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250569.1 CDS thrL NC_016863.1 190 255 D similar to Escherichia coli thr operon leader peptide (AAC73112.1); thr operon leader peptide 190..255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250570.1 CDS thrA NC_016863.1 338 2800 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 338..2800 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250571.1 CDS thrB NC_016863.1 2802 3731 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2802..3731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250572.1 CDS thrC NC_016863.1 3735 5021 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3735..5021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250573.1 CDS yaaA NC_016863.1 5115 5888 R hypothetical protein complement(5115..5888) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250574.1 CDS yaaJ NC_016863.1 5967 7397 R similar to Escherichia coli inner membrane transport protein (AAC73118.1); AGCS family; putative alanine/glycine transport protein complement(5967..7397) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250575.1 CDS talB NC_016863.1 7666 8619 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 7666..8619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250576.1 CDS mogA NC_016863.1 8730 9320 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 8730..9320 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250577.1 CDS yaaH NC_016863.1 9377 9943 R hypothetical protein complement(9377..9943) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250578.1 CDS htgA NC_016863.1 10093 10806 R similar to Escherichia coli putative oxidoreductase (AAC73122.1); regulator for sigma H promoters/sigma 32 promoters permitting growth at high temperature; hypothetical protein complement(10093..10806) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250579.1 CDS yaaI NC_016863.1 10842 11246 R hypothetical protein complement(10842..11246) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250580.1 CDS dnaK NC_016863.1 11594 13510 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 11594..13510 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250581.1 CDS dnaJ NC_016863.1 13596 14735 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 13596..14735 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250582.1 CDS STMUK_0014 NC_016863.1 15015 15962 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 15015..15962 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250583.1 CDS STMUK_0015 NC_016863.1 16089 16433 D putative bacteriophage protein 16089..16433 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250584.1 CDS STMUK_0016 NC_016863.1 16494 17027 R hypothetical protein complement(16494..17027) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250585.1 CDS STMUK_0017 NC_016863.1 17044 17487 R similar to Escherichia coli putative sensory transducer (AAC75886.1); hypothetical protein complement(17044..17487) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250586.1 CDS STMUK_0018 NC_016863.1 17868 19967 D putative exochitinase 17868..19967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250587.1 CDS STMUK_0019 NC_016863.1 20059 23055 D putative hydroxymethyltransferase 20059..23055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250588.1 CDS STMUK_0020 NC_016863.1 23336 24040 D putative cytoplasmic protein 23336..24040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250589.1 CDS bcfA NC_016863.1 24470 25012 D fimbrial subunit (gi|4959511); fimbrial subunit 24470..25012 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250590.1 CDS bcfB NC_016863.1 25113 25799 D fimbrial chaperone (gi|4959512); fimbrial chaparone 25113..25799 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250591.1 CDS bcfC NC_016863.1 25804 28425 D bovine colonization factor BcfC (gi|4530570); fimbrial usher 25804..28425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250592.1 CDS bcfD NC_016863.1 28426 29433 D fimbrial subunit (gi|4959514); fimbrial subunit 28426..29433 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250593.1 CDS bcfE NC_016863.1 29434 29979 D fimbrial subunit (gi|4959515); fimbrial subunit 29434..29979 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250594.1 CDS bcfF NC_016863.1 29995 30513 D fimbrial subunit (gi|4959516); fimbrial subunit 29995..30513 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250595.1 CDS bcfG NC_016863.1 30479 31210 D fimbrial chaperone (gi|4959517); fimbrial chaparone 30479..31210 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250596.1 CDS bcfH NC_016863.1 31275 32120 D putative thiol-disulfide isomerase 31275..32120 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250597.1 CDS STMUK_0029 NC_016863.1 32159 32446 D similar to hypothetical protein STM0028.1n (Pid: NP_945153.1).; hypothetical protein 32159..32446 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250598.1 CDS STMUK_0030 NC_016863.1 32546 32995 R putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator complement(32546..32995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250599.1 CDS STMUK_0031 NC_016863.1 33365 34369 D similar to LeuO (gi|6650098); LysR family; putative transcriptional regulator 33365..34369 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250600.1 CDS STMUK_0032 NC_016863.1 34377 34817 R putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator complement(34377..34817) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250601.1 CDS STMUK_0033 NC_016863.1 35340 37058 D putative arylsulfatase 35340..37058 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250602.1 CDS STMUK_0034 NC_016863.1 37104 38675 R similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); putative 5'-nucleotidase complement(37104..38675) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250603.1 CDS STMUK_0035 NC_016863.1 38774 39535 R similar to Escherichia coli putative sugar hydrolase (AAC75461.1); putative outer membrane/exported protein complement(38774..39535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250604.1 CDS STMUK_0036 NC_016863.1 40132 41625 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative arylsulfatase 40132..41625 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250605.1 CDS STMUK_0037 NC_016863.1 41724 42914 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 41724..42914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250606.1 CDS STMUK_0038 NC_016863.1 42933 44186 D putative cytoplasmic protein 42933..44186 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250607.1 CDS STMUK_0039 NC_016863.1 44313 46028 D putative arylsulfatase 44313..46028 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250608.1 CDS nhaA NC_016863.1 46191 47357 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 46191..47357 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250609.1 CDS nhaR NC_016863.1 47419 48318 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 47419..48318 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250610.1 CDS STMUK_0042 NC_016863.1 48373 50412 R putative glycosyl hydrolase complement(48373..50412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250611.1 CDS STMUK_0043 NC_016863.1 50452 51825 R similar to Escherichia coli putative permease (AAC76681.1); putative sodium galactoside symporter complement(50452..51825) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250612.1 CDS rpsT NC_016863.1 52281 52544 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(52281..52544) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250613.1 CDS yaaY NC_016863.1 52650 52865 D putative cytoplasmic protein 52650..52865 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250614.1 CDS ribC NC_016863.1 52873 53811 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 52873..53811 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250615.1 CDS ileS NC_016863.1 53856 56690 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine; isoleucyl-tRNA synthetase 53856..56690 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250616.1 CDS lspA NC_016863.1 56690 57190 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 56690..57190 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250617.1 CDS slpA NC_016863.1 57345 57794 D similar to Escherichia coli FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; rotamase (AAC73139.1); FKBP-type peptidyl-prolyl cis-trans isomerase 57345..57794 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250618.1 CDS lytB NC_016863.1 57797 58747 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57797..58747 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250619.1 CDS STMUK_0051 NC_016863.1 58947 60149 D putative nitrite reductase 58947..60149 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250620.1 CDS rihC NC_016863.1 60165 61085 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 60165..61085 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250621.1 CDS STMUK_0053 NC_016863.1 61107 61793 R similar to Escherichia coli sequence similarity to Shigella regulator (AAC73721.1); sensor for citrate; putative transcriptional regulator complement(61107..61793) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250622.1 CDS STMUK_0054 NC_016863.1 61795 63414 R similar to Escherichia coli putative sensor-type protein (AAC73720.1); histidine kinase for citrate; putative transcriptional regulator complement(61795..63414) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250623.1 CDS STMUK_0055 NC_016863.1 63549 64850 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta complement(63549..64850) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250624.1 CDS STMUK_0056 NC_016863.1 64863 66638 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(64863..66638) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250625.1 CDS STMUK_0057 NC_016863.1 66655 66894 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(66655..66894) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250626.1 CDS STMUK_0058 NC_016863.1 67053 68393 R putative citrate-sodium symporter complement(67053..68393) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250627.1 CDS citC2 NC_016863.1 68638 69681 D similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); putative citrate lyase synthetase 68638..69681 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250628.1 CDS citD2 NC_016863.1 69711 70004 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69711..70004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250629.1 CDS citE2 NC_016863.1 70001 70870 D similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); putative citrate lyase beta chain 70001..70870 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250630.1 CDS citF2 NC_016863.1 70881 72401 D similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); putative citrate lyase alpha chain/citrate-ACP transferase 70881..72401 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250631.1 CDS citX2 NC_016863.1 72401 72952 D putative cytoplasmic protein 72401..72952 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250632.1 CDS citG2 NC_016863.1 72930 73838 D putative modifier of citrate lyase protein; triphosphoribosyl-dephospho-CoA synthase 72930..73838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250633.1 CDS dapB NC_016863.1 74018 74839 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 74018..74839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250634.1 CDS STMUK_0066 NC_016863.1 74965 75240 R putative viral protein complement(74965..75240) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250635.1 CDS carA NC_016863.1 75882 77030 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 75882..77030 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250636.1 CDS carB NC_016863.1 77049 80276 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 77049..80276 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250637.1 CDS caiF NC_016863.1 80550 80945 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 80550..80945 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250638.1 CDS caiE NC_016863.1 81022 81618 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(81022..81618) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250639.1 CDS caiD NC_016863.1 81727 82512 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(81727..82512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250640.1 CDS caiC NC_016863.1 82566 84119 R similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); putative crotonobetaine/carnitine-CoA ligase complement(82566..84119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250641.1 CDS caiB NC_016863.1 84182 85399 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(84182..85399) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250642.1 CDS caiA NC_016863.1 85511 86653 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(85511..86653) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250643.1 CDS caiT NC_016863.1 86688 88205 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(86688..88205) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250644.1 CDS fixA NC_016863.1 88686 89456 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 88686..89456 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250645.1 CDS fixB NC_016863.1 89472 90413 D involved in electron transfer during carnitine metabolism; putative electron transfer flavoprotein FixB 89472..90413 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250646.1 CDS fixC NC_016863.1 90463 91749 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; putative oxidoreductase FixC 90463..91749 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250647.1 CDS fixX NC_016863.1 91746 92033 D similar to Escherichia coli putative ferredoxin (AAC73155.1); carnitine metabolism; putative ferredoxin 91746..92033 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250648.1 CDS yaaU NC_016863.1 92180 93520 D similar to Escherichia coli putative transport protein (AAC73156.1); MFS family; putative transport protein 92180..93520 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250649.1 CDS STMUK_0081 NC_016863.1 93609 93839 D putative outer membrane lipoprotein 93609..93839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250650.1 CDS STMUK_0082 NC_016863.1 94133 94549 D hypothetical protein 94133..94549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250651.1 CDS STMUK_0083 NC_016863.1 94773 95063 R hypothetical protein complement(94773..95063) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250652.1 CDS STMUK_0084 NC_016863.1 95273 95467 D putative inner membrane protein 95273..95467 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250653.1 CDS STMUK_0085 NC_016863.1 95961 97850 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 95961..97850 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250654.1 CDS yabF NC_016863.1 98257 98787 D Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 98257..98787 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250655.1 CDS kefC NC_016863.1 98780 100642 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 98780..100642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250656.1 CDS folA NC_016863.1 100841 101320 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 100841..101320 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250657.1 CDS apaH NC_016863.1 101426 102274 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(101426..102274) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250658.1 CDS apaG NC_016863.1 102285 102662 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(102285..102662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250659.1 CDS ksgA NC_016863.1 102665 103486 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(102665..103486) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250660.1 CDS pdxA NC_016863.1 103483 104472 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(103483..104472) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250661.1 CDS surA NC_016863.1 104472 105758 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA complement(104472..105758) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250662.1 CDS imp NC_016863.1 105812 108172 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(105812..108172) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250663.1 CDS djlA NC_016863.1 108426 109238 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid; Dna-J like membrane chaperone protein 108426..109238 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250664.1 CDS rluA NC_016863.1 109333 109992 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(109333..109992) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250665.1 CDS hepA NC_016863.1 110004 112910 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on; ATP-dependent helicase HepA complement(110004..112910) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250666.1 CDS polB NC_016863.1 113084 115435 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(113084..115435) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250667.1 CDS STMUK_0099 NC_016863.1 115479 116099 R hypothetical protein complement(115479..116099) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250668.1 CDS STMUK_0100 NC_016863.1 116301 116603 D putative inner membrane protein 116301..116603 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250669.1 CDS STMUK_0101 NC_016863.1 116818 117237 D putative cytoplasmic protein 116818..117237 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250670.1 CDS araD NC_016863.1 117243 117938 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(117243..117938) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250671.1 CDS araA NC_016863.1 118079 119581 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(118079..119581) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250672.1 CDS araB NC_016863.1 119592 121301 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(119592..121301) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250673.1 CDS araC NC_016863.1 121642 122487 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 121642..122487 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250674.1 CDS yabI NC_016863.1 122606 123373 D DedA family; hypothetical protein 122606..123373 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250675.1 CDS thiQ NC_016863.1 123412 124119 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(123412..124119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250676.1 CDS sfuB NC_016863.1 124103 125713 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(124103..125713) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250677.1 CDS tbpA NC_016863.1 125689 126672 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(125689..126672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250678.1 CDS yabN NC_016863.1 126850 128508 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(126850..128508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250679.1 CDS STMUK_0111 NC_016863.1 128601 128723 D similar to hypothetical protein SC0104 (Pid: YP_215091.1).; hypothetical protein 128601..128723 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250680.1 CDS leuD NC_016863.1 129059 129664 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(129059..129664) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250681.1 CDS leuC NC_016863.1 129675 131075 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(129675..131075) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250682.1 CDS leuB NC_016863.1 131078 132169 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(131078..132169) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250683.1 CDS leuA NC_016863.1 132169 133740 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(132169..133740) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250684.1 CDS leuL NC_016863.1 133828 133914 R involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide complement(133828..133914) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250685.1 CDS leuO NC_016863.1 134571 135515 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 134571..135515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250686.1 CDS ilvI NC_016863.1 135900 137561 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 135900..137561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250687.1 CDS ilvH NC_016863.1 137564 138055 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity; acetolactate synthase 3 regulatory subunit 137564..138055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250688.1 CDS fruR NC_016863.1 138339 139343 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 138339..139343 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250689.1 CDS yabB NC_016863.1 139949 140407 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 139949..140407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250690.1 CDS mraW NC_016863.1 140409 141350 D similar to Escherichia coli putative apolipoprotein (AAC73193.1); S-adenosyl-methyltransferase MraW 140409..141350 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250691.1 CDS ftsL NC_016863.1 141347 141712 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141347..141712 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250692.1 CDS ftsI NC_016863.1 141728 143494 D similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); division specific transpeptidase 141728..143494 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250693.1 CDS murE NC_016863.1 143481 144968 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143481..144968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250694.1 CDS murF NC_016863.1 144965 146323 D similar to Escherichia coli D-alanine-D-alanine-adding enzyme (AAC73197.1); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 144965..146323 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250695.1 CDS mraY NC_016863.1 146317 147399 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 146317..147399 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250696.1 CDS murD NC_016863.1 147402 148718 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 147402..148718 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250697.1 CDS ftsW NC_016863.1 148718 149962 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 148718..149962 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250698.1 CDS murG NC_016863.1 149959 151026 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 149959..151026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250699.1 CDS murC NC_016863.1 151145 152620 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 151145..152620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250700.1 CDS ddl NC_016863.1 152613 153533 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 152613..153533 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250701.1 CDS ftsQ NC_016863.1 153535 154365 D involved in septum formation; cell division protein FtsQ 153535..154365 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250702.1 CDS ftsA NC_016863.1 154362 155624 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 154362..155624 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250703.1 CDS ftsZ NC_016863.1 155685 156836 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 155685..156836 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250704.1 CDS lpxC NC_016863.1 156937 157854 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 156937..157854 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250705.1 CDS yacA NC_016863.1 158202 158630 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 158202..158630 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250706.1 CDS secA NC_016863.1 158692 161397 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis ap; preprotein translocase subunit SecA 158692..161397 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250707.1 CDS mutT NC_016863.1 161549 161944 D similar to Escherichia coli 7,8-dihydro-8-oxoguanine-triphosphatase; prefers dGTP; causes AT-GC transversions (AAC73210.1); nucleoside triphosphate pyrophosphohydrolase 161549..161944 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250708.1 CDS yacG NC_016863.1 162266 162457 R zinc-binding protein complement(162266..162457) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250709.1 CDS yacF NC_016863.1 162467 163210 R hypothetical protein complement(162467..163210) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250710.1 CDS coaE NC_016863.1 163210 163830 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(163210..163830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250711.1 CDS guaC NC_016863.1 164056 165099 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 164056..165099 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250712.1 CDS hofC NC_016863.1 165130 166332 R similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); type IV pilin biogenesis protein complement(165130..166332) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250713.1 CDS hofB NC_016863.1 166322 167707 R similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); hypothetical protein complement(166322..167707) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250714.1 CDS ppdD NC_016863.1 167717 168154 R similar to Escherichia coli prepilin peptidase dependent protein (AAC73219.1); putative major pilin subunit complement(167717..168154) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250715.1 CDS nadC NC_016863.1 168376 169269 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase complement(168376..169269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250716.1 CDS ampD NC_016863.1 169357 169920 D AMPD protein (SW:AMPD_SALTY); N-acetyl-anhydromuranmyl-L-alanine amidase 169357..169920 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250717.1 CDS ampE NC_016863.1 169917 170771 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 169917..170771 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250718.1 CDS STMUK_0150 NC_016863.1 170863 171813 R putative cytoplasmic protein complement(170863..171813) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250719.1 CDS STMUK_0151 NC_016863.1 171813 173219 R Na+/galactoside symporter complement(171813..173219) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250720.1 CDS aroP NC_016863.1 173383 174756 R similar to Escherichia coli aromatic amino acid transport protein (AAC73223.1); APC family; aromatic amino acid transporter complement(173383..174756) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250721.1 CDS pdhR NC_016863.1 175319 176083 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 175319..176083 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250722.1 CDS aceE NC_016863.1 176243 178906 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 176243..178906 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250723.1 CDS aceF NC_016863.1 178921 180810 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 178921..180810 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250724.1 CDS lpdA NC_016863.1 181010 182434 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 181010..182434 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250725.1 CDS STMUK_0157 NC_016863.1 182723 183007 D putative outer membrane protein 182723..183007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250726.1 CDS STMUK_0158 NC_016863.1 183045 183836 R hypothetical protein complement(183045..183836) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250727.1 CDS acnB NC_016863.1 185852 188449 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185852..188449 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250728.1 CDS STMUK_0161 NC_016863.1 188510 189352 R putative restriction endonuclease complement(188510..189352) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250729.1 CDS yacL NC_016863.1 189598 189960 D hypothetical protein 189598..189960 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250730.1 CDS kdgT NC_016863.1 190195 191148 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 190195..191148 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250731.1 CDS STMUK_0164 NC_016863.1 191145 192416 D putative inner membrane protein 191145..192416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250732.1 CDS pdxA NC_016863.1 192406 193389 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 192406..193389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250733.1 CDS STMUK_0166 NC_016863.1 193399 194166 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); LysR family; putative transcriptional regulator 193399..194166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250734.1 CDS speD NC_016863.1 194196 194990 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(194196..194990) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250735.1 CDS speE NC_016863.1 195011 195871 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(195011..195871) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250736.1 CDS yacC NC_016863.1 195978 196325 R hypothetical protein complement(195978..196325) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250737.1 CDS cueO NC_016863.1 196527 198137 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 196527..198137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250738.1 CDS gcd NC_016863.1 198215 200605 R similar to Escherichia coli glucose dehydrogenase (AAC73235.1); glucose dehydrogenase complement(198215..200605) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250739.1 CDS hpt NC_016863.1 200811 201347 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 200811..201347 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250740.1 CDS yadF NC_016863.1 201405 202067 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(201405..202067) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250741.1 CDS yadG NC_016863.1 202176 203102 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73238.1); putative ABC-type multidrug transport system ATPase component 202176..203102 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250742.1 CDS yadH NC_016863.1 203099 203869 D putative ABC superfamily membrane protein; putative transport protein 203099..203869 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250743.1 CDS stiH NC_016863.1 203986 205065 R LpfD protein precursor (SW:LPFD_SALTY); putative fimbrial protein precurosr complement(203986..205065) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250744.1 CDS stiC NC_016863.1 205074 207620 R similar to Escherichia coli putative outer membrane protein (AAC76178.1); fimbrial usher protein complement(205074..207620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250745.1 CDS stiB NC_016863.1 207647 208330 R similar to Escherichia coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(207647..208330) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250746.1 CDS stiA NC_016863.1 208378 208917 R similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial subunit complement(208378..208917) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250747.1 CDS yadI NC_016863.1 209287 209727 D similar to Escherichia coli putative PTS enzyme II B component (AAC73240.1); putative PTS enzyme 209287..209727 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250748.1 CDS yadE NC_016863.1 209789 211018 D putative xylanase/chitin deacetylase 209789..211018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250749.1 CDS panD NC_016863.1 211025 211405 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(211025..211405) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250750.1 CDS panC NC_016863.1 211500 212354 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(211500..212354) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250751.1 CDS panB NC_016863.1 212480 213271 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(212480..213271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250752.1 CDS folK NC_016863.1 213392 213871 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(213392..213871) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250753.1 CDS pcnB NC_016863.1 213868 215286 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I complement(213868..215286) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250754.1 CDS yadB NC_016863.1 215427 216368 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the; glutamyl-Q tRNA(Asp) synthetase complement(215427..216368) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250755.1 CDS dksA NC_016863.1 216392 216847 R dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; RNA polymerase-binding transcription factor complement(216392..216847) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250756.1 CDS sfsA NC_016863.1 217024 217728 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(217024..217728) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250757.1 CDS ligT NC_016863.1 217745 218275 R 2'-5' RNA ligase complement(217745..218275) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250758.1 CDS hrpB NC_016863.1 218303 220777 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 218303..220777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250759.1 CDS ponB NC_016863.1 220918 223440 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while; penicillin-binding protein 1b 220918..223440 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250760.1 CDS fhuA NC_016863.1 223733 225922 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 223733..225922 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250761.1 CDS fhuC NC_016863.1 225971 226768 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 225971..226768 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250762.1 CDS fhuD NC_016863.1 226768 227658 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 226768..227658 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250763.1 CDS fhuB NC_016863.1 227655 229712 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 227655..229712 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250764.1 CDS stfA NC_016863.1 230651 231211 D major fimbrial subunit StfA (gi|3747029); putative fimbrial subunit 230651..231211 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250765.1 CDS stfC NC_016863.1 231297 233954 D outer membrane usher protein StfC (gi|3747030); putative fimbrial outer membrane usher 231297..233954 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250766.1 CDS stfD NC_016863.1 233972 234724 D periplasmic fimbrial chaperone StfD (gi|3747031); putative periplasmic fimbrial chaperone 233972..234724 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250767.1 CDS stfE NC_016863.1 234743 235255 D minor fimbrial subunit StfE (gi|3747032); putative minor fimbrial subunit 234743..235255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250768.1 CDS stfF NC_016863.1 235252 235728 D minor fimbrial subunit StfF (gi|3747033); putative minor fimbrial subunit 235252..235728 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250769.1 CDS stfG NC_016863.1 235728 236258 D minor fimbrial subunit StfG (gi|3747034); putative adhesin; putative minor fimbrial subunit 235728..236258 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250770.1 CDS STMUK_0203 NC_016863.1 236258 237097 D hypothetical 30.2 da protein in stfG 3'region precursor (SW:YADU_SALTY); putative outer membrane protein 236258..237097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250771.1 CDS hemL NC_016863.1 237204 238484 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(237204..238484) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250772.1 CDS yadQ NC_016863.1 238654 240075 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 238654..240075 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250773.1 CDS yadR NC_016863.1 240112 240501 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 240112..240501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250774.1 CDS yadS NC_016863.1 240602 241225 R hypothetical protein complement(240602..241225) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250775.1 CDS btuF NC_016863.1 241262 242062 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(241262..242062) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250776.1 CDS pfs NC_016863.1 242055 242753 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(242055..242753) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250777.1 CDS dgt NC_016863.1 242838 244355 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 242838..244355 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250778.1 CDS htrA NC_016863.1 244485 245912 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 244485..245912 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250779.1 CDS cdaR NC_016863.1 246065 247222 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 246065..247222 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250780.1 CDS yaeH NC_016863.1 247311 247697 R similar to Escherichia coli putative structural protein (AAC73274.1); hypothetical protein complement(247311..247697) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250781.1 CDS STMUK_0214 NC_016863.1 247944 249245 D similar to Escherichia coli putative transport protein; shikimate (AAC75045.1); putative inner membrane protein 247944..249245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250782.1 CDS dapD NC_016863.1 249282 250106 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(249282..250106) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250783.1 CDS glnD NC_016863.1 250136 252808 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(250136..252808) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250784.1 CDS map NC_016863.1 253045 253839 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(253045..253839) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250785.1 CDS rpsB NC_016863.1 254290 255015 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 254290..255015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250786.1 CDS tsf NC_016863.1 255273 256124 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 255273..256124 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250787.1 CDS pyrH NC_016863.1 256269 256994 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 256269..256994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250788.1 CDS frr NC_016863.1 257141 257698 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release fact; ribosome recycling factor 257141..257698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250789.1 CDS dxr NC_016863.1 257839 259035 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 257839..259035 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250790.1 CDS uppS NC_016863.1 259348 260106 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 259348..260106 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250791.1 CDS cdsA NC_016863.1 260119 260976 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 260119..260976 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250792.1 CDS yaeL NC_016863.1 260988 262340 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 260988..262340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250793.1 CDS yaeT NC_016863.1 262372 264786 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 262372..264786 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250794.1 CDS hlpA NC_016863.1 264909 265394 D (SW:OMPH_SALTY); histone-like protein; periplasmic chaperone 264909..265394 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250795.1 CDS lpxD NC_016863.1 265398 266423 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 265398..266423 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250796.1 CDS fabZ NC_016863.1 266529 266984 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 266529..266984 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250797.1 CDS lpxA NC_016863.1 266988 267776 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 266988..267776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250798.1 CDS lpxB NC_016863.1 267776 268924 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 267776..268924 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250799.1 CDS rnhB NC_016863.1 268921 269517 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 268921..269517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250800.1 CDS dnaE NC_016863.1 269541 273023 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 269541..273023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250801.1 CDS accA NC_016863.1 273036 273995 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273036..273995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250802.1 CDS STMUK_0235 NC_016863.1 274175 275938 D putative endochitinase 274175..275938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250803.1 CDS ldcC NC_016863.1 276014 278155 D similar to Escherichia coli lysine decarboxylase 2; constitutive (AAC73297.1); lysine decarboxylase 2 276014..278155 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250804.1 CDS yaeR NC_016863.1 278211 278600 D hypothetical protein 278211..278600 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250805.1 CDS tilS NC_016863.1 278663 279955 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition; tRNA(Ile)-lysidine synthetase 278663..279955 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250806.1 CDS rof NC_016863.1 280039 280299 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(280039..280299) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250807.1 CDS yaeP NC_016863.1 280286 280504 R hypothetical protein complement(280286..280504) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250808.1 CDS yaeQ NC_016863.1 280684 281229 D hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); putative cytoplasmic protein 280684..281229 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250809.1 CDS yaeJ NC_016863.1 281226 281648 D putative-tRNA hydrolase domain; peptidyl-tRNA hydrolase domain-containing protein 281226..281648 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250810.1 CDS STMUK_0243 NC_016863.1 281680 282381 D similar to copper homeostasis protein CutF (Pid: YP_002039481.1).; hypothetical protein 281680..282381 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250811.1 CDS proS NC_016863.1 282455 284173 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(282455..284173) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250812.1 CDS yaeB NC_016863.1 284284 284991 R putative regulatory protein complement(284284..284991) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250813.1 CDS rcsF NC_016863.1 284988 285392 R similar to Escherichia coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); overexpression confers mucoid phenotype, increases capsule synthesis; outer membrane lipoprotein complement(284988..285392) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250814.1 CDS metQ NC_016863.1 285511 286326 R similar to Escherichia coli putative lipoprotein (AAC73308.1); DL-methionine transporter substrate-binding subunit complement(285511..286326) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250815.1 CDS yaeE NC_016863.1 286365 287018 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease complement(286365..287018) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250816.1 CDS metN NC_016863.1 287011 288042 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(287011..288042) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250817.1 CDS yaeD NC_016863.1 288232 288798 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 288232..288798 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250818.1 CDS dkgB NC_016863.1 295057 295860 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 295057..295860 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250819.1 CDS yafC NC_016863.1 295881 296795 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator complement(295881..296795) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250820.1 CDS STMUK_0259 NC_016863.1 296900 298075 D similar to Escherichia coli putative transport protein (AAC74729.1); putatively for chloramphenicol; putative drug efflux protein 296900..298075 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250821.1 CDS yafD NC_016863.1 298228 299007 D hypothetical protein 298228..299007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250822.1 CDS yafE NC_016863.1 299085 299855 D similar to Escherichia coli putative biotin synthesis protein (AAC73315.1); involved in menaquinone/biotin biosynthesis; putative methyltransferase 299085..299855 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250823.1 CDS mltD NC_016863.1 299911 301278 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transgl; membrane-bound lytic murein transglycosylase D complement(299911..301278) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250824.1 CDS gloB NC_016863.1 301350 302105 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(301350..302105) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250825.1 CDS yafS NC_016863.1 302140 302862 D putative SAM-dependent methyltransferase 302140..302862 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250826.1 CDS rnhA NC_016863.1 302859 303326 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(302859..303326) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250827.1 CDS dnaQ NC_016863.1 303390 304121 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 303390..304121 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250828.1 CDS STMUK_0268 NC_016863.1 304654 305709 R putative cytoplasmic protein complement(304654..305709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250829.1 CDS STMUK_0269 NC_016863.1 305720 306715 R putative cytoplasmic protein complement(305720..306715) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250830.1 CDS STMUK_0270 NC_016863.1 306712 308595 R putative cytoplasmic protein complement(306712..308595) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250831.1 CDS STMUK_0271 NC_016863.1 308611 309105 R putative cytoplasmic protein complement(308611..309105) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250832.1 CDS STMUK_0272 NC_016863.1 309102 309926 R putative cytoplasmic protein complement(309102..309926) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250833.1 CDS STMUK_0273 NC_016863.1 309913 310815 R putative cytoplasmic protein complement(309913..310815) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250834.1 CDS STMUK_0274 NC_016863.1 311183 313822 D similar to Escherichia coli ATP-binding component of serine protease (AAC73969.1); similar to Yersinia clpB; putative chaperone ATPase 311183..313822 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250835.1 CDS STMUK_0275 NC_016863.1 313922 314464 D putative cytoplasmic protein 313922..314464 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250836.1 CDS STMUK_0276 NC_016863.1 314488 315981 D putative cytoplasmic protein 314488..315981 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250837.1 CDS STMUK_0277 NC_016863.1 316044 316154 D invasol SirA 316044..316154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250838.1 CDS STMUK_0278 NC_016863.1 316281 316613 D putative cytoplasmic protein 316281..316613 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250839.1 CDS STMUK_0279 NC_016863.1 316867 317352 D putative cytoplasmic protein 316867..317352 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250840.1 CDS STMUK_0280 NC_016863.1 317657 318142 D putative cytoplasmic protein 317657..318142 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250841.1 CDS STMUK_0281 NC_016863.1 318127 318510 D hypothetical protein 318127..318510 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250842.1 CDS STMUK_0282 NC_016863.1 318653 319138 D putative cytoplasmic protein 318653..319138 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250843.1 CDS STMUK_0283 NC_016863.1 319205 319741 D putative outer membrane lipoprotein 319205..319741 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250844.1 CDS STMUK_0284 NC_016863.1 319745 321088 D putative cytoplasmic protein 319745..321088 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250845.1 CDS STMUK_0285 NC_016863.1 321085 322389 D similar to Escherichia coli putative outer membrane protein (AAC76576.1); OmpA family; hypothetical protein 321085..322389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250846.1 CDS STMUK_0286 NC_016863.1 322394 323167 D putative inner membrane protein 322394..323167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250847.1 CDS STMUK_0287 NC_016863.1 323370 323801 D putative Shiga-like toxin A subunit 323370..323801 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250848.1 CDS STMUK_0288 NC_016863.1 323835 327704 D putative inner membrane protein 323835..327704 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250849.1 CDS STMUK_0289 NC_016863.1 327704 328492 D putative cytoplasmic protein 327704..328492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250850.1 CDS STMUK_0290 NC_016863.1 328489 328905 D hypothetical protein 328489..328905 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250851.1 CDS STMUK_0291 NC_016863.1 328929 329450 D putative cytoplasmic protein 328929..329450 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250852.1 CDS STMUK_0292 NC_016863.1 329847 332036 D putative cytoplasmic protein 329847..332036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250853.1 CDS STMUK_0293 NC_016863.1 332060 332506 D putative cytoplasmic protein 332060..332506 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250854.1 CDS STMUK_0294 NC_016863.1 332525 336619 D similar to Escherichia coli RhsD protein in rhs element (AAC73599.1); similar to STM0292; putative RHS-like protein 332525..336619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250855.1 CDS STMUK_0295 NC_016863.1 336613 336876 D similar to hypothetical protein plu3111 (Pid: NP_930343.1).; hypothetical protein 336613..336876 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250856.1 CDS STMUK_0296 NC_016863.1 337069 337809 D similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291; putative RHS-like protein 337069..337809 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250857.1 CDS STMUK_0297 NC_016863.1 337803 338249 D putative cytoplasmic protein 337803..338249 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250858.1 CDS STMUK_0298 NC_016863.1 338634 338774 D similar to hypothetical protein SNSL254_A0323 (Pid: YP_002039530.1).; hypothetical protein 338634..338774 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250859.1 CDS STMUK_0299 NC_016863.1 338812 339249 D putative cytoplasmic protein 338812..339249 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250860.1 CDS STMUK_0300 NC_016863.1 339302 339577 R similar to hypothetical protein STM0294.1N (Pid: NP_945154.1).; hypothetical protein complement(339302..339577) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250861.1 CDS STMUK_0301 NC_016863.1 340018 340326 D putative cytoplasmic protein 340018..340326 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250862.1 CDS STMUK_0302 NC_016863.1 340428 340676 R putative cytoplasmic protein complement(340428..340676) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250863.1 CDS STMUK_0303 NC_016863.1 340729 340926 D putative transposase 340729..340926 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250864.1 CDS STMUK_0304 NC_016863.1 341152 341433 D similar to E. coli orf, hypothetical protein(AAC73370.1); Blastp hit to AAC73370.1 (384 aa); putative integrase core domain protein 341152..341433 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250865.1 CDS safA NC_016863.1 342183 342695 D putative outer membrane protein 342183..342695 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250866.1 CDS safB NC_016863.1 342803 343516 D similar to Escherichia coli putative chaperone (AAC76177.1); putative fimbrial assembly chaperone 342803..343516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250867.1 CDS safC NC_016863.1 343540 346050 D similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher 343540..346050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250868.1 CDS safD NC_016863.1 346072 346542 D putative fimbrial subunit 346072..346542 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250869.1 CDS ybeJ NC_016863.1 346948 347769 D putative xylanase/chitin deacetylase 346948..347769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250870.1 CDS sinR NC_016863.1 348584 349531 D SinR protein (SW:SINR_SALTY); transcriptional regulator 348584..349531 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250871.1 CDS STMUK_0311 NC_016863.1 349648 349863 D putative cytoplasmic protein 349648..349863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250872.1 CDS STMUK_0312 NC_016863.1 349867 350586 R SapA-like protein complement(349867..350586) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250873.1 CDS STMUK_0313 NC_016863.1 350917 351324 R similar to Shigella VirG protein; VirG-like protein complement(350917..351324) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250874.1 CDS yafV NC_016863.1 351695 352462 R similar to Escherichia coli putative amidase-type enzyme (AAC73323.1); hypothetical protein complement(351695..352462) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250875.1 CDS fadE NC_016863.1 352571 355015 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(352571..355015) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250876.1 CDS gmhA NC_016863.1 355255 355833 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 355255..355833 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250877.1 CDS yafJ NC_016863.1 356046 356813 D similar to Escherichia coli putative amidotransferase (AAC73327.1); putative glutamine amidotransferase 356046..356813 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250878.1 CDS yafK NC_016863.1 356784 357524 R hypothetical protein complement(356784..357524) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250879.1 CDS dinP NC_016863.1 357774 358829 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 357774..358829 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250882.1 CDS prfH NC_016863.1 360177 360791 D similar to release factor 1 and 2; peptide chain release factor-like protein 360177..360791 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250883.1 CDS pepD NC_016863.1 360947 362404 R similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1); aminoacyl-histidine dipeptidase complement(360947..362404) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250884.1 CDS gpt NC_016863.1 362653 363111 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 362653..363111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250885.1 CDS frsA NC_016863.1 363200 364444 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 363200..364444 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250886.1 CDS crl NC_016863.1 364502 364903 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 364502..364903 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250887.1 CDS phoE NC_016863.1 364954 366006 R outer membrane pore protein E precursor (SW:PHOE_SALTY); outer membrane phosphoporin protein E complement(364954..366006) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250888.1 CDS proB NC_016863.1 366289 367392 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 366289..367392 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250889.1 CDS proA NC_016863.1 367404 368654 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 367404..368654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250890.1 CDS STMUK_0331 NC_016863.1 369132 369353 D putative inner membrane protein 369132..369353 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250891.1 CDS STMUK_0332 NC_016863.1 369171 369971 R similar to Escherichia coli IS3 putative transposase (AAC75150.1); contains a premature stop codon; IS3 transposase complement(369171..369971) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250892.1 CDS STMUK_0333 NC_016863.1 370713 371036 D putative cytoplasmic protein 370713..371036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250893.1 CDS STMUK_0334 NC_016863.1 371377 372615 D similar to Escherichia coli putative transport protein (AAC74668.1); putative permease 371377..372615 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250894.1 CDS STMUK_0335 NC_016863.1 372747 374168 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 372747..374168 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250895.1 CDS STMUK_0336 NC_016863.1 374170 374796 D similar to Escherichia coli 3-isopropylmalate isomerase subunit (AAC73182.1); dehydratase; subunit with LeuC; putative 3-isopropylmalate isomerase 374170..374796 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250896.1 CDS STMUK_0337 NC_016863.1 374811 375689 D similar to Escherichia coli putative isomerase (AAC74264.1); FAA; putative fumarylacetoacetate hydrolase 374811..375689 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250897.1 CDS STMUK_0338 NC_016863.1 375689 376603 D putative hydrolase/acyltransferase 375689..376603 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250898.1 CDS STMUK_0339 NC_016863.1 376637 377602 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74869.1); LysR family; putative transcriptional regulator 376637..377602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250899.1 CDS STMUK_0340 NC_016863.1 377547 377819 R putative cytoplasmic protein complement(377547..377819) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250900.1 CDS STMUK_0341 NC_016863.1 378510 378908 D putative outer membrane protein 378510..378908 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250901.1 CDS stbE NC_016863.1 378955 379713 R similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(378955..379713) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250902.1 CDS stbD NC_016863.1 379679 381004 R putative fimbrial usher complement(379679..381004) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250903.1 CDS stbC NC_016863.1 381009 383576 R similar to Escherichia coli outer membrane protein; export and assembly of type 1 fimbriae; interrupted (AAC77273.1); putative fimbrial usher complement(381009..383576) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250904.1 CDS stbB NC_016863.1 383560 384321 R similar to Escherichia coli probable pilin chaperone PapD (AAC73251.1); putative fimbrial chaperone complement(383560..384321) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250905.1 CDS stbA NC_016863.1 384383 384919 R similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial major subunit complement(384383..384919) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250906.1 CDS STMUK_0347 NC_016863.1 385553 386317 D putative inner membrane protein 385553..386317 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250907.1 CDS STMUK_0348 NC_016863.1 386290 386790 D hypothetical protein 386290..386790 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250908.1 CDS STMUK_0349 NC_016863.1 387090 388664 D putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 387090..388664 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250909.1 CDS STMUK_0350 NC_016863.1 388764 389507 D putative response regulator 388764..389507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250910.1 CDS STMUK_0351 NC_016863.1 389480 389968 D putative inner membrane protein 389480..389968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250911.1 CDS STMUK_0352 NC_016863.1 390370 390894 D similar to ail and ompX; putative outer membrane protein 390370..390894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250912.1 CDS STMUK_0353 NC_016863.1 391038 391679 D putative response regulator 391038..391679 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250913.1 CDS STMUK_0354 NC_016863.1 391690 391914 D putative inner membrane protein 391690..391914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250914.1 CDS STMUK_0355 NC_016863.1 391972 392331 D putative outer membrane lipoprotein 391972..392331 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250915.1 CDS STMUK_0356 NC_016863.1 392401 393912 R similar to Escherichia coli putative resistance protein (AAC73673.1); outer membrane efflux-like protein complement(392401..393912) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250916.1 CDS STMUK_0357 NC_016863.1 393875 397042 R similar to Escherichia coli integral transmembrane protein; acridine resistance (AAC76298.1); putative cation efflux system protein complement(393875..397042) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250917.1 CDS STMUK_0358 NC_016863.1 397039 398265 R similar to Escherichia coli acridine efflux pump (AAC73565.1); putative cation efflux pump complement(397039..398265) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250918.1 CDS STMUK_0359 NC_016863.1 398542 400830 D similar to Escherichia coli putative ATPase (AAC73586.1); putative cation transport ATPase 398542..400830 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250919.1 CDS STMUK_0360 NC_016863.1 400842 401306 D similar to Escherichia coli putative transcriptional regulator (AAC73589.1); putative transcriptional regulator 400842..401306 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250920.1 CDS STMUK_0361 NC_016863.1 401384 401578 D putative copper chaperone 401384..401578 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250921.1 CDS STMUK_0362 NC_016863.1 401871 403124 D similar to Escherichia coli putative transport protein (AAC77235.1); putative inner membrane protein 401871..403124 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250922.1 CDS mod NC_016863.1 403313 405271 D type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; DNA methylase 403313..405271 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250923.1 CDS res NC_016863.1 405281 408253 D type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; DNA restriction enzyme 405281..408253 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250924.1 CDS STMUK_0365 NC_016863.1 408530 408631 D putative cytoplasmic protein 408530..408631 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250925.1 CDS STMUK_0366 NC_016863.1 408748 410151 D similar to Escherichia coli probable third cytochrome oxidase, subunit I (AAC74063.1); cytochrome BD2 subunit I 408748..410151 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250926.1 CDS STMUK_0367 NC_016863.1 410148 411158 D similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome BD2 subunit II 410148..411158 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250927.1 CDS STMUK_0368 NC_016863.1 411175 411399 D putative cytoplasmic protein 411175..411399 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250928.1 CDS STMUK_0369 NC_016863.1 411495 412499 D putative XylS/AraC transcriptional activator (gi|3094022); AraC family; putative transcriptional regulator 411495..412499 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250929.1 CDS foxA NC_016863.1 412645 414753 D ferrioxamine B receptor precursor (SW:FOXA_SALTY); ferrioxamine receptor 412645..414753 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250930.1 CDS yahN NC_016863.1 414794 415426 R similar to Escherichia coli putative cytochrome subunit of dehydrogenase (AAC73431.1); putative transport protein complement(414794..415426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250931.1 CDS yahO NC_016863.1 415658 415933 D hypothetical protein 415658..415933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250932.1 CDS prpR NC_016863.1 416069 417694 R propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; prp operon regulator complement(416069..417694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250933.1 CDS prpB NC_016863.1 417958 418845 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 417958..418845 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250934.1 CDS prpC NC_016863.1 418968 420137 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 418968..420137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250935.1 CDS mmgE NC_016863.1 420177 421628 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 420177..421628 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250936.1 CDS prpE NC_016863.1 421669 423555 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed; propionyl-CoA synthetase 421669..423555 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250937.1 CDS hemB NC_016863.1 423659 424633 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(423659..424633) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250938.1 CDS yaiU NC_016863.1 425146 428082 D similar to Escherichia coli putative flagellin structural protein (AAC73477.1); similar to 3rd module of ATP-binding components of transporters; flagellar protein 425146..428082 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250939.1 CDS yaiV NC_016863.1 428168 428791 D putative DNA-binding transcriptional regulator 428168..428791 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250940.1 CDS ampH NC_016863.1 428836 429966 R this protein has no known enzymatic function; beta-lactam binding protein AmpH complement(428836..429966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250941.1 CDS sbmA NC_016863.1 430340 431560 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 430340..431560 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250942.1 CDS yaiW NC_016863.1 431575 432669 D putative outer membrane lipoprotein 431575..432669 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250943.1 CDS yaiY NC_016863.1 432707 433015 R putative inner membrane protein complement(432707..433015) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250944.1 CDS yaiZ NC_016863.1 433283 433498 D putative inner membrane protein 433283..433498 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250945.1 CDS ddl NC_016863.1 433524 434618 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(433524..434618) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250946.1 CDS STMUK_0387 NC_016863.1 434696 435409 D putative inner membrane protein 434696..435409 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250947.1 CDS STMUK_0388 NC_016863.1 435578 436789 D similar to Escherichia coli putative transport protein (AAC74137.1); putative permease 435578..436789 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250948.1 CDS yaiB NC_016863.1 437080 437346 D hypothetical protein 437080..437346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250949.1 CDS psiF NC_016863.1 437698 438018 D similar to Escherichia coli protein induced by phosphate starvation (AAC73487.1); hypothetical protein 437698..438018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250950.1 CDS adrA NC_016863.1 438110 439222 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynt; diguanylate cyclase AdrA 438110..439222 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250951.1 CDS proC NC_016863.1 439237 440046 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(439237..440046) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250952.1 CDS yaiI NC_016863.1 440186 440641 D hypothetical protein 440186..440641 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250953.1 CDS aroL NC_016863.1 440826 441371 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 440826..441371 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250954.1 CDS yaiA NC_016863.1 441398 441589 D hypothetical protein 441398..441589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250955.1 CDS aroM NC_016863.1 441840 442517 D similar to Escherichia coli protein of aro operon; regulated by aroR (AAC73493.1); hypothetical protein 441840..442517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250956.1 CDS yaiE NC_016863.1 442588 442872 D hypothetical protein 442588..442872 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250957.1 CDS rdgC NC_016863.1 442910 443821 R Required for efficient pilin antigenic variation; recombination associated protein complement(442910..443821) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250958.1 CDS yajF NC_016863.1 443947 444855 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 443947..444855 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250959.1 CDS araJ NC_016863.1 444877 446049 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ complement(444877..446049) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250960.1 CDS sbcC NC_016863.1 446222 449362 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC complement(446222..449362) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250961.1 CDS sbcD NC_016863.1 449359 450561 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD complement(449359..450561) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250962.1 CDS phoB NC_016863.1 450776 451465 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 450776..451465 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250963.1 CDS phoR NC_016863.1 451535 452830 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 451535..452830 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250964.1 CDS brnQ NC_016863.1 453239 454558 D branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transporter 453239..454558 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250965.1 CDS proY NC_016863.1 454633 456003 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease 454633..456003 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250966.1 CDS malZ NC_016863.1 456165 457982 D similar to Escherichia coli maltodextrin glucosidase (AAC73506.1); maltodextrin glucosidase 456165..457982 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250967.1 CDS STMUK_0408 NC_016863.1 458054 458656 R similar to Escherichia coli alkyl hydroperoxide reductase C22 subunit; detoxification of hydroperoxides (AAC73706.1); putative thiol-alkyl hydroperoxide reductase complement(458054..458656) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250968.1 CDS yajB NC_016863.1 458866 459447 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase complement(458866..459447) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250969.1 CDS queA NC_016863.1 459541 460605 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 459541..460605 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250970.1 CDS tgt NC_016863.1 460802 461929 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 460802..461929 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250971.1 CDS yajC NC_016863.1 461952 462284 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 461952..462284 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250972.1 CDS secD NC_016863.1 462312 464159 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of; preprotein translocase subunit SecD 462312..464159 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250973.1 CDS secF NC_016863.1 464170 465141 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins f; preprotein translocase subunit SecF 464170..465141 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250974.1 CDS STMUK_0415 NC_016863.1 465289 465654 D hypothetical protein 465289..465654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250975.1 CDS STMUK_0416 NC_016863.1 465680 466372 D putative regulatory protein 465680..466372 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250976.1 CDS yajD NC_016863.1 466542 466889 D hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 466542..466889 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250977.1 CDS STMUK_0418 NC_016863.1 467137 467463 R hypothetical protein 14.5K (gi|1073681); putative inner membrane protein complement(467137..467463) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250978.1 CDS tsx NC_016863.1 467518 468381 R nucleoside-specific channel-forming protein TSX precursor (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside channel complement(467518..468381) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250979.1 CDS yajI NC_016863.1 468681 469220 R hypothetical protein complement(468681..469220) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250980.1 CDS nrdR NC_016863.1 469372 469821 D transcriptional regulator NrdR 469372..469821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250981.1 CDS ribD NC_016863.1 469825 470928 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine a; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 469825..470928 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250982.1 CDS ribH NC_016863.1 471017 471487 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl; 6,7-dimethyl-8-ribityllumazine synthase 471017..471487 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250983.1 CDS nusB NC_016863.1 471508 471927 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 471508..471927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250984.1 CDS thiL NC_016863.1 472006 472983 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 472006..472983 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250985.1 CDS pgpA NC_016863.1 472961 473476 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 472961..473476 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250986.1 CDS yajO NC_016863.1 473580 474554 R similar to Escherichia coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); K+ channel protein; putative oxidoreductase complement(473580..474554) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250987.1 CDS dxs NC_016863.1 474611 476473 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(474611..476473) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250988.1 CDS ispA NC_016863.1 476497 477396 R similar to Escherichia coli geranyltranstransferase; farnesyldiphosphate synthase (AAC73524.1); geranyltranstransferase complement(476497..477396) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250989.1 CDS xseB NC_016863.1 477397 477639 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(477397..477639) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250990.1 CDS thiI NC_016863.1 477849 479297 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 477849..479297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250991.1 CDS phnV NC_016863.1 479341 480138 R probable membrane component of 2-aminoethylphosphonate transporter PhnV (gi|11354255); 2-aminoethylphosphonate transporter complement(479341..480138) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250992.1 CDS phnU NC_016863.1 480141 481001 R probable membrane component of 2-aminoethylphosphonate transporter PhnU (gi|11354254); 2-aminoethylphosphonate transporter complement(480141..481001) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250993.1 CDS phnT NC_016863.1 481004 482113 R probable ATPase component of 2-aminoethylphosphonate transporter PhnT (gi|11354253); 2-aminoethylphosphonate transporter complement(481004..482113) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250994.1 CDS phnS NC_016863.1 482119 483132 R probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS (gi|11354256); 2-aminoethylphosphonate transporter complement(482119..483132) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250995.1 CDS phnR NC_016863.1 483330 484049 R probable repressor protein of GntR family PhnR (gi|11354257); 2-aminoethylphosphonate transport protein complement(483330..484049) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250996.1 CDS phnW NC_016863.1 484189 485292 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 484189..485292 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250997.1 CDS phnX NC_016863.1 485299 486111 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 485299..486111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250998.1 CDS thiJ NC_016863.1 486208 486798 R 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (SW:THIJ_SALTY); DJ-1 family protein complement(486208..486798) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005250999.1 CDS apbA NC_016863.1 486761 487672 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(486761..487672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251000.1 CDS yajQ NC_016863.1 487780 488289 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in ac; putative nucleotide-binding protein 487780..488289 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251001.1 CDS yajR NC_016863.1 488336 489685 R similar to Escherichia coli putative transport protein (AAC73530.1); MFS family; putative transport protein complement(488336..489685) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251002.1 CDS STMUK_0443 NC_016863.1 489928 490089 R IS903 transposase complement(489928..490089) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251003.1 CDS STMUK_0444 NC_016863.1 490237 491748 D hypothetical protein 490237..491748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251004.1 CDS STMUK_0445 NC_016863.1 491970 493253 D TPR repeat; hypothetical protein 491970..493253 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251005.1 CDS cyoE NC_016863.1 493335 494225 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(493335..494225) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251006.1 CDS cyoD NC_016863.1 494237 494566 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); cytochrome o ubiquinol oxidase subunit IV complement(494237..494566) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251007.1 CDS cyoC NC_016863.1 494566 495180 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); cytochrome o ubiquinol oxidase subunit III complement(494566..495180) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251008.1 CDS cyoB NC_016863.1 495170 497161 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); cytochrome o ubiquinol oxidase subunit I complement(495170..497161) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251009.1 CDS cyoA NC_016863.1 497172 498128 R similar to Escherichia coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); cytochrome o ubiquinol oxidase subunit II complement(497172..498128) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251010.1 CDS ampG NC_016863.1 498581 500056 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(498581..500056) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251011.1 CDS yajG NC_016863.1 500100 500732 R similar to Escherichia coli putative polymerase/proteinase (AAC73537.1); hypothetical protein complement(500100..500732) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251012.1 CDS bolA NC_016863.1 500982 501299 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 500982..501299 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251013.1 CDS tig NC_016863.1 501646 502944 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 501646..502944 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251014.1 CDS clpP NC_016863.1 503191 503814 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503191..503814 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251015.1 CDS clpX NC_016863.1 504066 505337 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 504066..505337 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251016.1 CDS lon NC_016863.1 505523 507877 D similar to Escherichia coli ATP-dependent protease La; heat shock K-protein (AAC73542.1); cleaves RcsA and SulA; heat shock K-protein; DNA binding activity; DNA-binding ATP-dependent protease La 505523..507877 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251017.1 CDS hupB NC_016863.1 508086 508358 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 508086..508358 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251018.1 CDS cypD NC_016863.1 508649 510520 D similar to Escherichia coli putative protease maturation protein (AAC73544.1); peptidyl-prolyl cis-trans isomerase 508649..510520 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251019.1 CDS ybaV NC_016863.1 510670 511044 D similar to DNA-binding proteins; putative DNA uptake protein 510670..511044 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251020.1 CDS ybaW NC_016863.1 511148 511546 D putative esterase 511148..511546 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251021.1 CDS ybaX NC_016863.1 511652 512347 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and H; queuosine biosynthesis protein QueC complement(511652..512347) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251022.1 CDS ybaE NC_016863.1 512412 514112 R putative ABC transporter periplasmic binding protein complement(512412..514112) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251023.1 CDS cof NC_016863.1 514213 515031 D putative hydrolase 514213..515031 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251024.1 CDS tnpA_6 NC_016863.1 515218 515676 D transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 515218..515676 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251025.1 CDS STMUK_0466 NC_016863.1 515792 516847 R similar to Escherichia coli cysteine synthase B; O-acetylserine sulfhydrolase B (AAC75474.1); putative cysteine synthase/cystathionine beta-synthase complement(515792..516847) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251026.1 CDS ybaO NC_016863.1 516960 517418 D similar to Escherichia coli putative LRP-like transcriptional regulator (AAC73550.1); AsnC family; putative transcriptional regulator 516960..517418 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251027.1 CDS mdlA NC_016863.1 517459 519231 D similar to Escherichia coli ATP-binding component of a transport system (AAC73551.1); putative ABC superfamily transporter; putative multidrug transporter membrane ATP-binding components 517459..519231 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251028.1 CDS mdlB NC_016863.1 519224 521005 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73552.1); putative ABC superfamily; putative multidrug transporter membrane ATP-binding components 519224..521005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251029.1 CDS glnK NC_016863.1 521218 521556 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interac; nitrogen regulatory protein P-II 2 521218..521556 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251030.1 CDS amtB NC_016863.1 521588 522874 D similar to Escherichia coli probable ammonium transporter (AAC73554.1); Amt family; ammonium transporter 521588..522874 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251031.1 CDS tesB NC_016863.1 522974 523834 R similar to Escherichia coli acyl-CoA thioesterase II (AAC73555.1); acyl-CoA thioesterase II complement(522974..523834) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251032.1 CDS ybaY NC_016863.1 524049 524618 D similar to Escherichia coli glycoprotein/polysaccharide metabolism (AAC73556.1); hypothetical protein 524049..524618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251033.1 CDS ybaZ NC_016863.1 524651 525040 R putative methyltransferase complement(524651..525040) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251034.1 CDS ylaB NC_016863.1 525271 526821 R putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(525271..526821) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251035.1 CDS rpmE2 NC_016863.1 527046 527306 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially g; 50S ribosomal protein L31 527046..527306 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251036.1 CDS rpmJ NC_016863.1 527312 527452 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc io; 50S ribosomal protein L36 527312..527452 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251037.1 CDS ylaC NC_016863.1 527508 527978 R putative inner membrane protein complement(527508..527978) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251038.1 CDS maa NC_016863.1 528095 528646 R similar to Escherichia coli putative transferase (AAC73561.1); maltose O-acetyltransferase complement(528095..528646) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251039.1 CDS hha NC_016863.1 528825 529043 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(528825..529043) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251040.1 CDS ybaJ NC_016863.1 529071 529445 R hypothetical protein complement(529071..529445) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251041.1 CDS acrB NC_016863.1 529941 533090 R similar to Escherichia coli acridine efflux pump (AAC73564.1); RND family; acridine efflux pump complement(529941..533090) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251042.1 CDS acrA NC_016863.1 533113 534306 R similar to Escherichia coli acridine efflux pump (AAC73565.1); acridine efflux pump complement(533113..534306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251043.1 CDS acrR NC_016863.1 534448 535101 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 534448..535101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251044.1 CDS aefA NC_016863.1 535220 538582 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 535220..538582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251045.1 CDS STMUK_0486 NC_016863.1 538624 539559 R putative transposase complement(538624..539559) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251046.1 CDS ybaM NC_016863.1 539629 539796 R hypothetical protein complement(539629..539796) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251047.1 CDS priC NC_016863.1 539810 540325 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulat; primosomal replication protein N'' complement(539810..540325) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251048.1 CDS ybaN NC_016863.1 540406 540783 D similar to Escherichia coli putative gene 58 (AAC73570.1); hypothetical protein 540406..540783 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251049.1 CDS apt NC_016863.1 540936 541487 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 540936..541487 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251050.1 CDS dnaX NC_016863.1 541601 543529 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to; DNA polymerase III subunits gamma and tau 541601..543529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251051.1 CDS ybaB NC_016863.1 543575 543904 D hypothetical protein 543575..543904 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251052.1 CDS recR NC_016863.1 543904 544509 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 543904..544509 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251053.1 CDS htpG NC_016863.1 544596 546494 D molecular chaperone; heat shock protein 90 544596..546494 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251054.1 CDS adk NC_016863.1 546735 547379 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 546735..547379 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251055.1 CDS hemH NC_016863.1 547608 548570 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 547608..548570 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251056.1 CDS aes NC_016863.1 548567 549538 R similar to Escherichia coli putative lipase (AAC73578.1); acetyl esterase complement(548567..549538) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251057.1 CDS gsk NC_016863.1 549691 550995 D similar to Escherichia coli inosine-guanosine kinase (AAC73579.1); inosine-guanosine kinase 549691..550995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251058.1 CDS ybaL NC_016863.1 551044 552720 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein complement(551044..552720) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251059.1 CDS fsr NC_016863.1 552935 554155 R similar to Escherichia coli fosmidomycin resistance protein (AAC73581.1); MFS family; putative transport protein complement(552935..554155) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251060.1 CDS ushA NC_016863.1 554328 555980 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 554328..555980 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251061.1 CDS ybaK NC_016863.1 556097 556576 R protein YbaK (SW:YBAK_SALTY); hypothetical protein complement(556097..556576) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251062.1 CDS ybaP NC_016863.1 556778 557572 R similar to Escherichia coli putative ligase (AAC73584.1); putative cytoplasmic protein complement(556778..557572) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251063.1 CDS STMUK_0504 NC_016863.1 557658 558485 R hypothetical protein complement(557658..558485) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251064.1 CDS copA NC_016863.1 558639 561140 R similar to Escherichia coli putative ATPase (AAC73586.1); copper exporting ATPase complement(558639..561140) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251065.1 CDS cueR NC_016863.1 561250 561666 D activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 561250..561666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251066.1 CDS ybbJ NC_016863.1 561667 562119 R implicated in regulation of membrane protease activity; hypothetical protein complement(561667..562119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251067.1 CDS ybbK NC_016863.1 562116 563033 R similar to Escherichia coli putative protease (AAC73591.1); putative inner membrane protein complement(562116..563033) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251068.1 CDS ybbL NC_016863.1 563180 563857 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73592.1); putative ABC transporter ATP-binding protein YbbL 563180..563857 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251069.1 CDS ybbM NC_016863.1 563844 564623 D similar to Escherichia coli putative metal resistance protein (AAC73593.1); YbbM family; putative transport protein 563844..564623 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251070.1 CDS ybbN NC_016863.1 564709 565563 R similar to Escherichia coli putative thioredoxin-like protein (AAC73594.1); putative thioredoxin protein complement(564709..565563) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251071.1 CDS ybbO NC_016863.1 565623 566393 R similar to Escherichia coli putative oxidoreductase (AAC73595.1); short chain dehydrogenase complement(565623..566393) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251072.1 CDS tesA NC_016863.1 566548 567162 R similar to Escherichia coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); lysophospholipaseL(I); multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(566548..567162) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251073.1 CDS ybbA NC_016863.1 567133 567819 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73597.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YbbA 567133..567819 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251074.1 CDS ybbP NC_016863.1 567816 570230 D similar to Escherichia coli putative oxidoreductase (AAC73598.1); putative inner membrane protein 567816..570230 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251075.1 CDS STMUK_0516 NC_016863.1 570416 571549 D putative outer membrane protein 570416..571549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251076.1 CDS sfbA NC_016863.1 571806 572636 D similar to Escherichia coli putative lipoprotein (AAC73308.1); cell division protein; ABC transporter ATP-binding protein 571806..572636 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251077.1 CDS sfbB NC_016863.1 572673 573689 D similar to Escherichia coli ATP-binding component of a transporter (AAC73310.1); cell division protein; ABC transporter ATP-binding protein 572673..573689 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251078.1 CDS sfbC NC_016863.1 573682 574341 D similar to Escherichia coli putative transport system permease protein (AAC73309.1); binding-protein-dependent; putative ABC transporter permease 573682..574341 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251079.1 CDS ybbB NC_016863.1 574380 575474 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(574380..575474) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251080.1 CDS ybbS NC_016863.1 575544 576470 R activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS complement(575544..576470) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251081.1 CDS allA NC_016863.1 576697 577179 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 576697..577179 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251082.1 CDS allR NC_016863.1 577258 578076 D regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 577258..578076 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251083.1 CDS gcl NC_016863.1 578161 579942 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 578161..579942 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251084.1 CDS gip NC_016863.1 579955 580731 D similar to Escherichia coli glyoxylate-induced protein (AAC73610.1); hydroxypyruvate isomerase 579955..580731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251085.1 CDS glxR NC_016863.1 580832 581710 D similar to Escherichia coli putative oxidoreductase (AAC73611.1); tartronic semialdehyde reductase 580832..581710 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251086.1 CDS STMUK_0527 NC_016863.1 581776 583023 D similar to Escherichia coli putative transport protein; cryptic; joins former yjiZ and yjjL (AAC77312.1); putative permease 581776..583023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251087.1 CDS ybbV NC_016863.1 583099 583353 D putative cytoplasmic protein 583099..583353 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251088.1 CDS allP NC_016863.1 583260 584573 D similar to Escherichia coli putative transport protein (AAC73613.1); NCS1 family; allantoin permease 583260..584573 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251089.1 CDS allB NC_016863.1 584652 586013 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 584652..586013 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251090.1 CDS ybbY NC_016863.1 586072 587370 D similar to Escherichia coli putative transport (AAC73615.1); putative purine permease YbbY 586072..587370 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251091.1 CDS glxK NC_016863.1 587393 588541 D glycerate kinase 587393..588541 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251092.1 CDS ylbA NC_016863.1 588621 589406 R hypothetical protein complement(588621..589406) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251093.1 CDS allC NC_016863.1 589417 590652 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidogl; allantoate amidohydrolase complement(589417..590652) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251094.1 CDS allD NC_016863.1 590674 591723 R similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); ureidoglycolate dehydrogenase complement(590674..591723) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251095.1 CDS fdrA NC_016863.1 592054 593718 D multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 592054..593718 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251096.1 CDS ylbE NC_016863.1 593728 594987 D putative cytoplasmic protein 593728..594987 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251097.1 CDS ylbF NC_016863.1 594999 595808 D similar to Escherichia coli putative carboxylase (AAC73622.1); putative cytoplasmic protein 594999..595808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251098.1 CDS arcC NC_016863.1 595812 596705 D forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 595812..596705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251099.1 CDS purK NC_016863.1 596746 597813 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(596746..597813) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251100.1 CDS purE NC_016863.1 597810 598319 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(597810..598319) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251101.1 CDS lpxH NC_016863.1 598437 599159 R catalyzes the formation of 2,3; UDP-2,3-diacylglucosamine hydrolase complement(598437..599159) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251102.1 CDS ppiB NC_016863.1 599162 599656 R similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B; rotamase B (AAC73627.1); peptidyl-prolyl cis-trans isomerase B complement(599162..599656) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251103.1 CDS cysS NC_016863.1 599829 601214 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 599829..601214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251104.1 CDS STMUK_0545 NC_016863.1 601258 602082 R putative outer membrane protein complement(601258..602082) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251105.1 CDS STMUK_0546 NC_016863.1 602079 602516 R putative inner membrane protein complement(602079..602516) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251106.1 CDS ybcI NC_016863.1 602509 603054 R putative membrane-bound metal-dependent hydrolase complement(602509..603054) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251107.1 CDS ybcJ NC_016863.1 603182 603394 R hypothetical protein complement(603182..603394) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251108.1 CDS folD NC_016863.1 603396 604262 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(603396..604262) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251109.1 CDS fimA NC_016863.1 604809 605366 D type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; fimbrin 604809..605366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251110.1 CDS fimI NC_016863.1 605442 605975 D fimbrin-like protein FimI (SW:FIMI_SALTY); fimbrial protein 605442..605975 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251111.1 CDS fimC NC_016863.1 606019 606711 D chaperone protein FimC precursor (SW:FIMC_SALTY); required for type 1 fimbriae; periplasmic chaperone 606019..606711 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251112.1 CDS fimD NC_016863.1 606742 609354 D outer membrane usher protein FimD precursor (SW:FIMD_SALTY); outer membrane usher protein 606742..609354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251113.1 CDS fimH NC_016863.1 609369 610376 D FIMH protein precursor (SW:FIMH_SALTY); minor fimbrial subunit 609369..610376 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251114.1 CDS fimF NC_016863.1 610386 610904 D fimbrial-like protein FimF precursor (SW:FIMF_SALTY); putative fimbrial protein 610386..610904 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251115.1 CDS fimZ NC_016863.1 610950 611582 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(610950..611582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251116.1 CDS fimY NC_016863.1 612186 612908 R fimbriae Y protein (SW:FIMY_SALTY); putative regulatory protein complement(612186..612908) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251117.1 CDS STMUK_0558 NC_016863.1 612927 613238 R putative diguanylate cyclase/phosphodiesterase domain 0; hypothetical protein complement(612927..613238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251118.1 CDS fimW NC_016863.1 613400 613996 R fimbriae W protein (SW:FIMW_SALTY); putative fimbrial protein complement(613400..613996) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251119.1 CDS STMUK_0561 NC_016863.1 614287 614475 R similar to Escherichia coli prophage DLP12 integrase (AAC73638.1); integrase complement(614287..614475) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251120.1 CDS STMUK_0562 NC_016863.1 614892 615110 R putative transposase complement(614892..615110) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251121.1 CDS STMUK_0563 NC_016863.1 615497 617149 R putative inner membrane protein complement(615497..617149) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251122.1 CDS yfdH NC_016863.1 617130 618056 R similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative glycosyltransferase complement(617130..618056) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251123.1 CDS rfbI NC_016863.1 618053 618415 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(618053..618415) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251124.1 CDS STMUK_0566 NC_016863.1 619283 619612 R similar to Escherichia coli putative 2-component sensor protein (AAC73671.1); sensor kinase complement(619283..619612) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251125.1 CDS STMUK_0567 NC_016863.1 619721 619900 D similar to E. coli putative inner membranecomponent for iron transport (AAC73676.1); Blastp hit toAAC73676.1 (1047 aa); putative transport protein 619721..619900 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251126.1 CDS STMUK_0568 NC_016863.1 619951 620805 R similar to Escherichia coli putative AraC-type regulatory protein (AAC73408.1); AraC/XylS family; putative transcriptional regulator complement(619951..620805) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251127.1 CDS STMUK_0569 NC_016863.1 621021 622346 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 621021..622346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251128.1 CDS STMUK_0570 NC_016863.1 622503 622739 D hypothetical protein 622503..622739 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251129.1 CDS STMUK_0571 NC_016863.1 622752 623312 D putative inner membrane protein 622752..623312 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251130.1 CDS STMUK_0572 NC_016863.1 623391 624566 R putative DNA repair ATPase complement(623391..624566) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251131.1 CDS pheP NC_016863.1 624892 626286 D similar to Escherichia coli phenylalanine-specific transport system (AAC73677.1); APC family; phenylalanine transporter 624892..626286 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251132.1 CDS ybdG NC_016863.1 626328 627575 R similar to Escherichia coli putative transport (AAC73678.1); hypothetical protein complement(626328..627575) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251133.1 CDS apeE NC_016863.1 627886 629856 D outer membrane esterase (gi|2896133); N-acetyl phenylalanine beta-naphthyl esterase; outer membrane esterase 627886..629856 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251134.1 CDS STMUK_0576 NC_016863.1 630023 632752 D putative inner membrane protein 630023..632752 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251135.1 CDS STMUK_0577 NC_016863.1 632880 633866 R similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase complement(632880..633866) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251136.1 CDS STMUK_0578 NC_016863.1 633933 634976 R similar to Escherichia coli L-glutamine/D-fructose-6-phosphate aminotransferase (AAC76752.1); putative inner membrane protein complement(633933..634976) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251137.1 CDS STMUK_0579 NC_016863.1 635009 635863 R similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system mannose-specific enzyme IID complement(635009..635863) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251138.1 CDS STMUK_0580 NC_016863.1 635866 636609 R similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); putative inner membrane protein complement(635866..636609) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251139.1 CDS STMUK_0581 NC_016863.1 636624 637094 R similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB complement(636624..637094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251140.1 CDS STMUK_0582 NC_016863.1 637072 637521 R similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB complement(637072..637521) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251141.1 CDS nfnB NC_016863.1 637721 638374 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(637721..638374) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251142.1 CDS ybdF NC_016863.1 638471 638839 R hypothetical protein complement(638471..638839) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251143.1 CDS STMUK_0585 NC_016863.1 638839 639420 R putative regulatory protein complement(638839..639420) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251144.1 CDS STMUK_0586 NC_016863.1 639709 640050 D resistance against oxidative stress protein A (gi|9885772); putative regulatory protein 639709..640050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251145.1 CDS ybdJ NC_016863.1 640056 640304 R putative inner membrane protein complement(640056..640304) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251146.1 CDS ybdK NC_016863.1 640371 641489 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(640371..641489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251147.1 CDS entD NC_016863.1 641501 642205 R similar to Escherichia coli enterochelin synthetase component D (AAC73684.1); phoshpantetheinyltransferase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex complement(641501..642205) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251148.1 CDS fepA NC_016863.1 642251 644506 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(642251..644506) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251149.1 CDS fes NC_016863.1 644695 645909 D similar to Escherichia coli enterochelin esterase (AAC73686.1); enterobactin/ferric enterobactin esterase 644695..645909 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251150.1 CDS ybdZ NC_016863.1 645940 646158 D putative cytoplasmic protein 645940..646158 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251151.1 CDS entF NC_016863.1 646155 650039 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 646155..650039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251152.1 CDS fepE NC_016863.1 650289 651425 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 650289..651425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251153.1 CDS fepC NC_016863.1 651478 652272 R with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein complement(651478..652272) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251154.1 CDS fepG NC_016863.1 652269 653258 R with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease complement(652269..653258) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251155.1 CDS fepD NC_016863.1 653258 654265 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein complement(653258..654265) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251156.1 CDS ybdA NC_016863.1 654376 655620 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 654376..655620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251157.1 CDS fepB NC_016863.1 655683 656639 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(655683..656639) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251158.1 CDS entC NC_016863.1 656948 658123 D synthesizes isochorismate acid from chorismate; isochorismate synthase 656948..658123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251159.1 CDS entE NC_016863.1 658133 659743 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 658133..659743 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251160.1 CDS entB NC_016863.1 659757 660614 D similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase; isochroismatase (AAC73696.1); 2,3-dihydro-2,3-dihydroxybenzoate synthetase 659757..660614 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251161.1 CDS entA NC_016863.1 660614 661369 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 660614..661369 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251162.1 CDS ybdB NC_016863.1 661372 661785 D possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 661372..661785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251163.1 CDS cstA NC_016863.1 661967 664072 D similar to Escherichia coli carbon starvation protein (AAC73699.1); carbon starvation protein 661967..664072 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251164.1 CDS ybdD NC_016863.1 664136 664333 D putative cytoplasmic protein 664136..664333 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251165.1 CDS ybdH NC_016863.1 664369 665457 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(664369..665457) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251166.1 CDS ybdL NC_016863.1 665584 666744 D catalyzes the transfer of an amino moiety; putative aminotransferase 665584..666744 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251167.1 CDS ybdM NC_016863.1 666745 667362 R putative transcriptional regulator complement(666745..667362) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251168.1 CDS ybdN NC_016863.1 667335 668570 R PAPS reductase/FAD synthetase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase complement(667335..668570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251169.1 CDS ybdO NC_016863.1 668736 669638 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator complement(668736..669638) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251170.1 CDS dsbG NC_016863.1 669955 670701 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(669955..670701) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251171.1 CDS ahpC NC_016863.1 671142 671705 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 671142..671705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251172.1 CDS ahpF NC_016863.1 671947 673512 D alkyl hydroperoxide reductase subunit F (SW:AHPF_SALTY); detoxification of hydroperoxides; alkyl hydroperoxide reductase F52a subunit 671947..673512 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251173.1 CDS STMUK_0615 NC_016863.1 673844 674404 D similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 673844..674404 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251174.1 CDS STMUK_0616 NC_016863.1 674397 676676 D similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative oxidoreductase protein 674397..676676 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251175.1 CDS STMUK_0618 NC_016863.1 677032 677799 D similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative hydrogenase protein 677032..677799 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251176.1 CDS ybdQ NC_016863.1 677867 678295 R similar to UspA and related nucleotide-binding protein; putative universal stress protein complement(677867..678295) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251177.1 CDS ybdR NC_016863.1 678518 679756 D similar to Escherichia coli putative oxidoreductase (AAC73709.1); putative dehydrogenase 678518..679756 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251178.1 CDS rnk NC_016863.1 679839 680249 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(679839..680249) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251179.1 CDS rna NC_016863.1 680484 681290 R similar to Escherichia coli RNase I; cleaves phosphodiester bond between any two nucleotides (AAC73712.1); ribonuclease I complement(680484..681290) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251180.1 CDS citT NC_016863.1 681400 682863 R similar to Escherichia coli putative membrane protein (AAC73713.1); DASS family; citrate/succinate transport antiport protein complement(681400..682863) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251181.1 CDS citG NC_016863.1 682901 683797 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(682901..683797) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251182.1 CDS citX NC_016863.1 683769 684320 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase complement(683769..684320) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251183.1 CDS citF NC_016863.1 684324 685853 R similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); citrate lyase subunit alpha/citrate-ACP transferase complement(684324..685853) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251184.1 CDS citE NC_016863.1 685863 686771 R similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); citrate lyase subunit beta complement(685863..686771) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251185.1 CDS citD NC_016863.1 686768 687064 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(686768..687064) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251186.1 CDS citC NC_016863.1 687061 688137 R similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); citrate lyase synthetase complement(687061..688137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251187.1 CDS dpiB NC_016863.1 688522 690183 D similar to Escherichia coli putative sensor-type protein (AAC73720.1); in two-component regulatory system with DpiA; regulation of cit operon and plasmid inheritance genes; sensory histidine kinase 688522..690183 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251188.1 CDS dpiA NC_016863.1 690152 690832 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 690152..690832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251189.1 CDS dcuC NC_016863.1 690886 692271 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(690886..692271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251190.1 CDS pagP NC_016863.1 692650 693222 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 692650..693222 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251191.1 CDS cspE NC_016863.1 693410 693619 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 693410..693619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251192.1 CDS ccrB NC_016863.1 693677 694060 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(693677..694060) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251193.1 CDS ybeM NC_016863.1 694151 694939 D similar to Escherichia coli putative amidase (AAC73727.1); putative hydrolase 694151..694939 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251194.1 CDS tatE NC_016863.1 695068 695271 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a; twin arginine translocase protein E 695068..695271 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251195.1 CDS lipA NC_016863.1 695357 696322 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(695357..696322) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251196.1 CDS ybeF NC_016863.1 696528 697481 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative DNA-binding transcriptional regulator complement(696528..697481) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251197.1 CDS lipB NC_016863.1 697783 698358 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(697783..698358) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251198.1 CDS ybeD NC_016863.1 698524 698787 R hypothetical protein complement(698524..698787) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251199.1 CDS dacA NC_016863.1 698896 700107 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(698896..700107) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251200.1 CDS rlpA NC_016863.1 700247 701392 R similar to Escherichia coli minor lipoprotein (AAC73734.1); rare lipoprotein A complement(700247..701392) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251201.1 CDS mrdB NC_016863.1 701403 702515 R similar to Escherichia coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); cell elongation in exponential phase; cell wall shape-determining protein complement(701403..702515) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251202.1 CDS mrdA NC_016863.1 702518 704419 R similar to Escherichia coli cell elongation e phase protein; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); penicillin-binding protein 2 complement(702518..704419) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251203.1 CDS ybeA NC_016863.1 704450 704917 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(704450..704917) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251204.1 CDS ybeB NC_016863.1 704921 705238 R similar to putative ACR plant Iojap protein; hypothetical protein complement(704921..705238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251205.1 CDS cobC NC_016863.1 705567 706175 R alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase complement(705567..706175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251206.1 CDS cobD NC_016863.1 706272 707366 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 706272..707366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251207.1 CDS nadD NC_016863.1 707341 707982 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(707341..707982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251208.1 CDS holA NC_016863.1 707984 709015 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(707984..709015) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251209.1 CDS rlpB NC_016863.1 709015 709605 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(709015..709605) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251210.1 CDS leuS NC_016863.1 709620 712202 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl; leucyl-tRNA synthetase complement(709620..712202) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251211.1 CDS STMUK_0654 NC_016863.1 712439 712780 D similar to Escherichia coli altronate hydrolase N-terminus (AAC76126.1); putative hydrolase 712439..712780 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251212.1 CDS STMUK_0655 NC_016863.1 712797 713969 D similar to Escherichia coli putative hydrolase C-terminus (AAC76162.1); putative hydrolase 712797..713969 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251213.1 CDS STMUK_0656 NC_016863.1 714019 714972 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 714019..714972 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251214.1 CDS STMUK_0657 NC_016863.1 715040 716968 D similar to Escherichia coli response regulator of ato; ornithine decarboxylase antizyme; sensor ATOS (AAC75280.1); putative sigma-54 dependent transcriptional regulator 715040..716968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251215.1 CDS ybeL NC_016863.1 717061 717534 D similar to Escherichia coli putative alpha helical protein (AAC73744.1); hypothetical protein 717061..717534 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251216.1 CDS ybeQ NC_016863.1 717573 718568 R TPR repeat; hypothetical protein complement(717573..718568) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251217.1 CDS ybeR NC_016863.1 718693 719400 D putative cytoplasmic protein 718693..719400 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251218.1 CDS ybeS NC_016863.1 719397 720830 D similar to Escherichia coli putative enzyme of polynucleotide modification (AAC73747.1); DnaJ family; putative molecular chaperone 719397..720830 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251219.1 CDS ybeV NC_016863.1 721535 723007 D DnaJ family; putative molecular chaperone 721535..723007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251220.1 CDS hscC NC_016863.1 723029 724708 R similar to Escherichia coli putative DnaK protein (AAC73751.1); similar to Hsp70 in Hsc66 subfamily; putative heatshock protein complement(723029..724708) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251221.1 CDS STMUK_0665 NC_016863.1 724784 726022 R putative cytoplasmic protein complement(724784..726022) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251222.1 CDS rihA NC_016863.1 726054 726989 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(726054..726989) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251223.1 CDS gltL NC_016863.1 727106 727831 R similar to Escherichia coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); ABC superfamily ATP-binding protein; glutamate/aspartate transporter complement(727106..727831) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251224.1 CDS gltK NC_016863.1 727831 728505 R similar to Escherichia coli glutamate/aspartate transport system permease (AAC73754.1); ABC superfamily membrane protein; glutamate/aspartate transporter complement(727831..728505) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251225.1 CDS gltJ NC_016863.1 728505 729245 R similar to Escherichia coli glutamate/aspartate transport system permease (AAC73755.1); ABC superfamily membrane protein; glutamate/aspartate transporter complement(728505..729245) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251226.1 CDS gltI NC_016863.1 729405 730331 R similar to Escherichia coli putative periplasmic binding transport protein (AAC73756.1); ABC superfamily binding protein; glutamate and aspartate transporter subunit complement(729405..730331) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251227.1 CDS lnt NC_016863.1 730668 732206 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(730668..732206) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251228.1 CDS ybeX NC_016863.1 732226 733104 R similar to Escherichia coli putative transport protein (AAC73759.1); contains putative CBS domain; putative transport protein complement(732226..733104) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251229.1 CDS ybeY NC_016863.1 733262 733735 R hypothetical protein in cutE-corC intergenic region (SW:YBEY_SALTY); putative metalloprotease complement(733262..733735) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251230.1 CDS phoL NC_016863.1 733732 734817 R similar to Escherichia coli putative ATP-binding protein in pho regulon (AAC73761.1); putative phosphate starvation-inducible protein complement(733732..734817) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251231.1 CDS miaB NC_016863.1 734983 736407 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(734983..736407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251232.1 CDS yleB NC_016863.1 736551 737726 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 736551..737726 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251233.1 CDS STMUK_0677 NC_016863.1 737793 738368 R putative inner membrane protein complement(737793..738368) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251234.1 CDS asnB NC_016863.1 739435 741099 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(739435..741099) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251235.1 CDS nagD NC_016863.1 741389 742141 R similar to Escherichia coli N-acetylglucosamine metabolism (AAC73769.1); UMP phosphatase complement(741389..742141) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251236.1 CDS nagC NC_016863.1 742188 743408 R similar to Escherichia coli transcriptional repressor of nag; N-acetylglucosamine operon (AAC73770.1); NagC/XylR family; N-acetylglucosamine operon transcriptional repressor complement(742188..743408) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251237.1 CDS nagA NC_016863.1 743413 744567 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(743413..744567) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251238.1 CDS nagB NC_016863.1 744627 745427 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(744627..745427) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251239.1 CDS nagE NC_016863.1 745754 747706 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system N-acetyl glucosamine specific transporter subunit IIABC 745754..747706 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251240.1 CDS glnS NC_016863.1 747917 749584 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 747917..749584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251241.1 CDS ybfM NC_016863.1 750030 751436 D putative outer membrane protein 750030..751436 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251242.1 CDS ybfN NC_016863.1 751486 751818 D putative lipoprotein 751486..751818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251243.1 CDS citA NC_016863.1 751867 753171 R citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY); citrate-proton symporter complement(751867..753171) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251244.1 CDS citB NC_016863.1 753222 754361 R citrate utilization protein B (SW:CIT2_SALTY); citrate utilization protein b complement(753222..754361) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251245.1 CDS STMUK_0696 NC_016863.1 754348 755751 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(754348..755751) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251246.1 CDS STMUK_0697 NC_016863.1 755849 756775 R similar to Escherichia coli nitrogen assimilation control protein (AAC75050.1); LysR family; putative transcriptional regulator complement(755849..756775) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251247.1 CDS fur NC_016863.1 756890 757342 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(756890..757342) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251248.1 CDS fldA NC_016863.1 757624 758154 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(757624..758154) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251249.1 CDS ybfF NC_016863.1 758732 759502 R hypothetical protein complement(758732..759502) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251250.1 CDS seqA NC_016863.1 759687 760229 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 759687..760229 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251251.1 CDS pgm NC_016863.1 760254 761894 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 760254..761894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251252.1 CDS STMUK_0704 NC_016863.1 762009 762494 R putative cytoplasmic protein complement(762009..762494) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251253.1 CDS potE NC_016863.1 762559 763878 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter complement(762559..763878) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251254.1 CDS speF NC_016863.1 763875 766073 R similar to Escherichia coli ornithine decarboxylase isozyme; inducible (AAC73787.1); ornithine decarboxylase complement(763875..766073) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251255.1 CDS STMUK_0707 NC_016863.1 766471 766584 D similar to hypothetical protein SeHA_C0823 (Pid: YP_002044733.1).; hypothetical protein 766471..766584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251256.1 CDS kdpE NC_016863.1 766835 767512 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(766835..767512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251257.1 CDS kdpD NC_016863.1 767509 770193 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(767509..770193) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251258.1 CDS kdpC NC_016863.1 770190 770774 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(770190..770774) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251259.1 CDS kdpB NC_016863.1 770783 772831 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(770783..772831) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251260.1 CDS kdpA NC_016863.1 772852 774531 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(772852..774531) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251261.1 CDS kdpF NC_016863.1 774531 774620 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F complement(774531..774620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251262.1 CDS ybfA NC_016863.1 774957 775163 D hypothetical protein 774957..775163 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251263.1 CDS phrB NC_016863.1 775274 776695 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 775274..776695 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251264.1 CDS ybgH NC_016863.1 776734 778215 R similar to Escherichia coli putative transport protein (AAC73803.1); POT family transport protein complement(776734..778215) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251265.1 CDS ybgI NC_016863.1 778544 779287 D putative hydrolase-oxidase 778544..779287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251266.1 CDS ybgJ NC_016863.1 779303 779959 D similar to Escherichia coli putative carboxylase (AAC73805.1); putative carboxylase 779303..779959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251267.1 CDS ybgK NC_016863.1 779953 780885 D similar to Escherichia coli putative carboxylase (AAC73806.1); putative carboxylase 779953..780885 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251268.1 CDS ybgL NC_016863.1 780875 781609 D similar to Escherichia coli putative lactam utilization protein (AAC73807.1); LamB/YcsF family protein 780875..781609 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251269.1 CDS STMUK_0721 NC_016863.1 781933 782064 D putative cytoplasmic protein 781933..782064 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251270.1 CDS STMUK_0722 NC_016863.1 782124 782690 D similar to Escherichia coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); putative phage integrase 782124..782690 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251271.1 CDS STMUK_0723 NC_016863.1 783150 783485 D putative inner membrane protein 783150..783485 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251272.1 CDS STMUK_0724 NC_016863.1 783487 784227 D putative cytoplasmic protein 783487..784227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251273.1 CDS STMUK_0725 NC_016863.1 784513 785664 D similar to Escherichia coli UDP-galactopyranose mutase (AAC75097.1); putative UDP-galactopyranose mutase 784513..785664 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251274.1 CDS STMUK_0726 NC_016863.1 785661 786557 D putative glycosyl transferase 785661..786557 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251275.1 CDS STMUK_0727 NC_016863.1 786570 787703 D similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); putative glycosyl transferase 786570..787703 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251276.1 CDS STMUK_0728 NC_016863.1 787832 788602 D ABC transporter permease 787832..788602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251277.1 CDS STMUK_0729 NC_016863.1 788606 789316 D similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type polysaccharide/polyol phosphate transport system ATPase component 788606..789316 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251278.1 CDS STMUK_0730 NC_016863.1 789410 791188 D cell wall biogenesis; putative glycosyltransferase 789410..791188 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251279.1 CDS STMUK_0731 NC_016863.1 791381 792214 D cell wall biogenesis; putative glycosyltransferase 791381..792214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251280.1 CDS STMUK_0732 NC_016863.1 792272 794167 D putative glycosyl transferase 792272..794167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251281.1 CDS STMUK_0733 NC_016863.1 794235 794372 D putative cytoplasmic protein 794235..794372 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251282.1 CDS nei NC_016863.1 794421 795212 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has ap; endonuclease VIII 794421..795212 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251283.1 CDS abrB NC_016863.1 795267 796313 R similar to Escherichia coli putative transport protein (AAC73809.1); putative transport protein complement(795267..796313) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251284.1 CDS gltA NC_016863.1 796450 797733 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexa; type II citrate synthase complement(796450..797733) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251285.1 CDS STMUK_0737 NC_016863.1 797693 798079 D putative inner membrane protein 797693..798079 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251286.1 CDS sdhC NC_016863.1 798488 798877 D similar to Escherichia coli succinate dehydrogenase; cytochrome b556 (AAC73815.1); succinate dehydrogenase cytochrome b556 large membrane subunit 798488..798877 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251287.1 CDS sdhD NC_016863.1 798871 799218 D similar to Escherichia coli succinate dehydrogenase; hydrophobic subunit (AAC73816.1); succinate dehydrogenase cytochrome b556 small membrane subunit 798871..799218 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251288.1 CDS sdhA NC_016863.1 799218 800984 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components; succinate dehydrogenase flavoprotein subunit 799218..800984 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251289.1 CDS sdhB NC_016863.1 800998 801717 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components; succinate dehydrogenase iron-sulfur subunit 800998..801717 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251290.1 CDS sucA NC_016863.1 802241 805042 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succin; 2-oxoglutarate dehydrogenase E1 component 802241..805042 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251291.1 CDS sucB NC_016863.1 805057 806265 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 805057..806265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251292.1 CDS sucC NC_016863.1 806407 807573 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 806407..807573 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251293.1 CDS sucD NC_016863.1 807573 808442 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 807573..808442 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251294.1 CDS cydA NC_016863.1 810025 811593 D similar to Escherichia coli cytochrome d terminal oxidase; polypeptide subunit I (AAC73827.1); cytochrome d terminal oxidase polypeptide subunit I 810025..811593 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251295.1 CDS cydB NC_016863.1 811609 812748 D similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome d terminal oxidase polypeptide subunit II 811609..812748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251296.1 CDS ybgT NC_016863.1 812763 812876 D putative outer membrane lipoprotein 812763..812876 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251297.1 CDS ybgE NC_016863.1 813013 813294 D hypothetical protein 813013..813294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251298.1 CDS ybgC NC_016863.1 813523 813927 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope com; acyl-CoA thioester hydrolase YbgC 813523..813927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251299.1 CDS tolQ NC_016863.1 813924 814616 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 813924..814616 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251300.1 CDS tolR NC_016863.1 814620 815048 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 814620..815048 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251301.1 CDS tolA NC_016863.1 815113 816336 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 815113..816336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251302.1 CDS tolB NC_016863.1 816460 817752 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 816460..817752 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251303.1 CDS pal NC_016863.1 817787 818311 D similar to Escherichia coli peptidoglycan-associated lipoprotein (AAC73835.1); tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; peptidoglycan-associated outer membrane lipoprotein 817787..818311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251304.1 CDS ybgF NC_016863.1 818321 819109 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 818321..819109 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251305.1 CDS nadA NC_016863.1 820575 821618 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 820575..821618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251306.1 CDS pnuC NC_016863.1 821643 822362 D PNUC protein (SW:PNUC_SALTY); NMN family; nucleoside/purine/pyrimidine transporter 821643..822362 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251307.1 CDS ybgR NC_016863.1 822359 823297 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(822359..823297) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251308.1 CDS ybgS NC_016863.1 823408 823794 R similar to Escherichia coli putative homeobox protein (AAC73840.1); hypothetical protein complement(823408..823794) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251309.1 CDS aroG NC_016863.1 824114 825166 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 824114..825166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251310.1 CDS STMUK_0767 NC_016863.1 825260 825805 R similar to Escherichia coli fumarase B; fumarate hydratase class I; anaerobic isozyme (AAC77083.1); fumarate hydratase complement(825260..825805) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251311.1 CDS STMUK_0768 NC_016863.1 825820 826665 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(825820..826665) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251312.1 CDS STMUK_0769 NC_016863.1 826834 827685 D similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; transcriptional regulator 826834..827685 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251313.1 CDS STMUK_0770 NC_016863.1 827686 828669 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; transcriptional regulator complement(827686..828669) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251314.1 CDS STMUK_0771 NC_016863.1 828913 830160 D similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 828913..830160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251315.1 CDS dcoC NC_016863.1 830210 830455 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 830210..830455 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251316.1 CDS STMUK_0773 NC_016863.1 832259 833560 D oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta 832259..833560 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251317.1 CDS STMUK_0774 NC_016863.1 833679 834377 D putative cytoplasmic protein 833679..834377 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251318.1 CDS STMUK_0775 NC_016863.1 834757 835836 D similar to Escherichia coli ferric enterobactin transport (AAC73691.1); putative ABC transport protein 834757..835836 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251319.1 CDS STMUK_0776 NC_016863.1 835836 836612 D similar to Escherichia coli ATP-binding component of ferric enterobactin transport (AAC73689.1); putative ABC-type cobalamin/Fe3+-siderophore transport component 835836..836612 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251320.1 CDS gpmA NC_016863.1 836703 837455 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(836703..837455) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251321.1 CDS galM NC_016863.1 837679 838719 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(837679..838719) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251322.1 CDS galK NC_016863.1 838713 839861 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(838713..839861) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251323.1 CDS galT NC_016863.1 839864 840910 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(839864..840910) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251324.1 CDS galE NC_016863.1 840921 841937 R UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase complement(840921..841937) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251325.1 CDS STMUK_0782 NC_016863.1 842160 843068 R putative inner membrane protein complement(842160..843068) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251326.1 CDS modF NC_016863.1 843239 844714 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF complement(843239..844714) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251327.1 CDS modE NC_016863.1 844782 845570 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(844782..845570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251328.1 CDS STMUK_0785 NC_016863.1 845699 845848 D hypothetical protein 845699..845848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251329.1 CDS modA NC_016863.1 846015 846788 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 846015..846788 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251330.1 CDS chlJ NC_016863.1 846788 847477 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 846788..847477 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251331.1 CDS modC NC_016863.1 847480 848538 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 847480..848538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251332.1 CDS ybhA NC_016863.1 848539 849357 R YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monopho; phosphotransferase complement(848539..849357) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251333.1 CDS ybhE NC_016863.1 849521 850516 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 849521..850516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251334.1 CDS ybhC NC_016863.1 850660 851943 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase complement(850660..851943) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251335.1 CDS hutI NC_016863.1 852181 853404 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 852181..853404 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251336.1 CDS hutG NC_016863.1 853401 854342 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 853401..854342 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251337.1 CDS hutC NC_016863.1 854387 855112 D similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); histidine utilization repressor 854387..855112 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251338.1 CDS STMUK_0795 NC_016863.1 855309 856994 D similar to urocanate hydratase (Pid: YP_002636401.1).; hypothetical protein 855309..856994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251339.1 CDS hutH NC_016863.1 856996 858516 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 856996..858516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251340.1 CDS ybhB NC_016863.1 858601 859077 R YbhB; similar to rat and human kinase inhibitory proteins; putative kinase inhibitor protein complement(858601..859077) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251341.1 CDS bioA NC_016863.1 859135 860424 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(859135..860424) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251342.1 CDS bioB NC_016863.1 860511 861551 D similar to Escherichia coli biotin synthesis (AAC73862.1); biotin synthetase 860511..861551 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251343.1 CDS bioF NC_016863.1 861548 862705 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 861548..862705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251344.1 CDS bioC NC_016863.1 862689 863444 D putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 862689..863444 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251345.1 CDS bioD NC_016863.1 863437 864123 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 863437..864123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251346.1 CDS uvrB NC_016863.1 864774 866795 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 864774..866795 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251347.1 CDS STMUK_0804 NC_016863.1 867104 867277 D putative cytoplasmic protein 867104..867277 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251348.1 CDS slrP NC_016863.1 867285 869582 D leucine-rich repeat protein SlrP (gi|5107020); secreted by SPI-1; type III secretion; hypothetical protein 867285..869582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251349.1 CDS ybhK NC_016863.1 869674 870582 R similar to Escherichia coli putative structural protein (AAC73867.1); putative cytoplasmic protein complement(869674..870582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251350.1 CDS moaA NC_016863.1 870979 871968 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 870979..871968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251351.1 CDS moaB NC_016863.1 871990 872502 D similar to Escherichia coli molybdopterin biosynthetic protein B (AAC73869.1); molybdopterin biosynthetic protein B 871990..872502 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251352.1 CDS moaC NC_016863.1 872505 872990 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 872505..872990 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251353.1 CDS moaD NC_016863.1 872977 873228 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 872977..873228 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251354.1 CDS moaE NC_016863.1 873230 873682 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 873230..873682 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251355.1 CDS ybhL NC_016863.1 873730 874434 D putative permease 873730..874434 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251356.1 CDS ybhM NC_016863.1 874581 875288 D hypothetical protein 874581..875288 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251357.1 CDS STMUK_0814 NC_016863.1 875312 875920 D putative inner membrane protein 875312..875920 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251358.1 CDS STMUK_0815 NC_016863.1 875928 876488 D putative inner membrane protein 875928..876488 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251359.1 CDS ybhN NC_016863.1 876491 877453 R hypothetical protein complement(876491..877453) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251360.1 CDS ybhO NC_016863.1 877453 878694 R similar to Escherichia coli putative synthetase (AAC73876.1); CL synthase; cardiolipin synthase 2 complement(877453..878694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251361.1 CDS ybhP NC_016863.1 878691 879449 R putative cytoplasmic protein complement(878691..879449) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251362.1 CDS ybhQ NC_016863.1 879582 879992 D putative inner membrane protein 879582..879992 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251363.1 CDS ybhR NC_016863.1 879954 881060 R putative ABC superfamily membrane protein; putative transport protein complement(879954..881060) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251364.1 CDS ybhS NC_016863.1 881176 882306 R putative ABC superfamily membrane protein; putative transport protein complement(881176..882306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251365.1 CDS ybhF NC_016863.1 882299 884035 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC73881.1); putative ABC-type multidrug transport system ATPase component complement(882299..884035) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251366.1 CDS STMUK_0823 NC_016863.1 884028 885023 R similar to Escherichia coli putative membrane protein (AAC73882.1); predicted cation efflux pump; hypothetical protein complement(884028..885023) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251367.1 CDS ybiH NC_016863.1 885023 885697 R similar to Escherichia coli putative transcriptional regulator (AAC73883.1); TetR/AcrR family; putative DNA-binding transcriptional regulator complement(885023..885697) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251368.1 CDS rhlE NC_016863.1 885927 887291 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 885927..887291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251369.1 CDS dinG NC_016863.1 887499 889643 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 887499..889643 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251370.1 CDS ybiB NC_016863.1 889673 890647 D similar to Escherichia coli putative enzyme (AAC73887.1); glycosyl transferase family protein 889673..890647 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251371.1 CDS ybiJ NC_016863.1 890803 891063 R hypothetical protein complement(890803..891063) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251372.1 CDS ybiI NC_016863.1 891348 891614 R putative DnaK suppressor protein; hypothetical protein complement(891348..891614) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251373.1 CDS ybiN NC_016863.1 891819 892745 D putative SAM-dependent methyltransferase 891819..892745 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251374.1 CDS ybiO NC_016863.1 892742 894964 R similar to Escherichia coli putative transport protein (AAC73895.1); hypothetical protein complement(892742..894964) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251375.1 CDS glnQ NC_016863.1 895083 895805 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(895083..895805) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251376.1 CDS glnP NC_016863.1 895802 896461 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(895802..896461) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251377.1 CDS glnH NC_016863.1 896605 897351 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein complement(896605..897351) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251378.1 CDS dps NC_016863.1 897828 898331 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and; DNA starvation/stationary phase protection protein Dps complement(897828..898331) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251379.1 CDS ybiF NC_016863.1 898634 899521 R hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine and homoserine efflux system complement(898634..899521) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251380.1 CDS ompX NC_016863.1 899875 900390 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 899875..900390 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251381.1 CDS ybiP NC_016863.1 900453 902033 R similar to Escherichia coli putative enzyme (AAC73902.1); hypothetical protein complement(900453..902033) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251382.1 CDS STMUK_0839 NC_016863.1 902199 902369 D similar to hypothetical protein SPAB_02663 (Pid: YP_001588874.1).; hypothetical protein 902199..902369 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251383.1 CDS STMUK_0840 NC_016863.1 902612 903085 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 902612..903085 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251384.1 CDS ybiR NC_016863.1 903082 904194 D putative di-/tricarboxylate transporter; putative transporter 903082..904194 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251385.1 CDS ybiS NC_016863.1 904238 905158 R hypothetical protein complement(904238..905158) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251386.1 CDS ybiT NC_016863.1 905377 906969 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC73907.1); contains duplicated ATPase domain; putative ABC transporter ATPase component 905377..906969 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251387.1 CDS STMUK_0844 NC_016863.1 907578 908321 D C-terminus is similar to N-terminus of some pyridine nucleotide transhydrogenase; putative inner membrane protein 907578..908321 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251388.1 CDS ybiV2 NC_016863.1 908350 909069 R would extend upstream except for stop codon; putative N-terminally truncated hydrolase; HAD superfamily; putative hydrolase complement(908350..909069) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251389.1 CDS ybiU NC_016863.1 909274 910539 R putative cytoplasmic protein complement(909274..910539) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251390.1 CDS ybiV1 NC_016863.1 910801 911610 D HAD superfamily; putative hydrolase 910801..911610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251391.1 CDS pflF NC_016863.1 911688 914120 R similar to Escherichia coli putative formate acetyltransferase (AAC73910.1); putative pyruvate formate lyase complement(911688..914120) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251392.1 CDS pflE NC_016863.1 914126 915025 R similar to Escherichia coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); putative pyruvate formate lyase activating enzyme complement(914126..915025) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251393.1 CDS moeB NC_016863.1 915303 916052 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(915303..916052) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251394.1 CDS moeA NC_016863.1 916052 917293 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA complement(916052..917293) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251395.1 CDS ybiK NC_016863.1 917490 918431 D similar to Escherichia coli putative asparaginase (AAC73915.1); L-asparaginase 917490..918431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251396.1 CDS yliA NC_016863.1 918442 920313 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 918442..920313 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251397.1 CDS yliB NC_016863.1 920346 921884 D similar to Escherichia coli putative transport protein (AAC73917.1); putative ABC transporter periplasmic binding protein 920346..921884 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251398.1 CDS yliC NC_016863.1 921945 922865 D similar to Escherichia coli putative transport system permease protein (AAC73918.1); putative ABC transporter periplasmic binding protein 921945..922865 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251399.1 CDS yliD NC_016863.1 922868 923779 D similar to Escherichia coli putative transport system permease protein (AAC73919.1); putative ABC transporter inner membrane component 922868..923779 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251400.1 CDS rimO NC_016863.1 923870 925195 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(923870..925195) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251401.1 CDS yliH NC_016863.1 925426 925809 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2; biofilm formation regulatory protein BssR 925426..925809 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251402.1 CDS STMUK_0859 NC_016863.1 926522 927037 D putative cytoplasmic protein 926522..927037 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251403.1 CDS STMUK_0860 NC_016863.1 926955 927809 D similar to Escherichia coli probable flavoprotein subunit; carnitine metabolism (AAC73152.1); putative electron transfer protein beta subunit 926955..927809 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251404.1 CDS STMUK_0861 NC_016863.1 927820 928767 D similar to Escherichia coli putative flavoprotein (AAC74768.1); putative electron transfer protein alpha subunit 927820..928767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251405.1 CDS STMUK_0862 NC_016863.1 928800 928997 D similar to hypothetical protein SPC_0855 (Pid: YP_002636468.1).; hypothetical protein 928800..928997 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251406.1 CDS STMUK_0863 NC_016863.1 929061 930224 D similar to Escherichia coli putative oxidoreductase (AAC74765.1); putative acyl-CoA dehydrogenase 929061..930224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251407.1 CDS STMUK_0864 NC_016863.1 930673 932358 D similar to Escherichia coli flavoprotein; probable electron transport protein (AAC74769.1); putative dehydrogenase 930673..932358 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251408.1 CDS STMUK_0865 NC_016863.1 932364 933254 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator complement(932364..933254) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251409.1 CDS STMUK_0866 NC_016863.1 933519 933944 R putative inner membrane protein complement(933519..933944) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251410.1 CDS STMUK_0867 NC_016863.1 934291 934971 D similar to E. coli putative dehydrogenase(AAC73924.1); Blastp hit to AAC73924.1 (371 aa); putative dehydrogenase 934291..934971 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251411.1 CDS yliJ NC_016863.1 934968 935594 R similar to Escherichia coli putative transferase (AAC73925.1); putative glutathione S-transferase complement(934968..935594) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251412.1 CDS dacC NC_016863.1 935838 937040 D penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 935838..937040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251413.1 CDS deoR NC_016863.1 937085 937843 R similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; DNA-binding transcriptional repressor DeoR complement(937085..937843) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251414.1 CDS ybjG NC_016863.1 937915 938523 R undecaprenyl pyrophosphate phosphatase complement(937915..938523) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251415.1 CDS mdfA NC_016863.1 938836 940068 D similar to Escherichia coli proton motive force efflux pump (AAC73929.1); multidrug translocase 938836..940068 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251416.1 CDS STMUK_0873 NC_016863.1 940122 940937 R putative hydrolase complement(940122..940937) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251417.1 CDS STMUK_0874 NC_016863.1 940934 942145 R similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative transport protein/regulator complement(940934..942145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251418.1 CDS STMUK_0875 NC_016863.1 942313 942933 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family; putative regulatory protein 942313..942933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251419.1 CDS STMUK_0876 NC_016863.1 943050 944735 R similar to Escherichia coli putative transport protein (AAC73934.1); hypothetical protein complement(943050..944735) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251420.1 CDS ybjM NC_016863.1 945006 945383 D putative inner membrane protein 945006..945383 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251421.1 CDS grxA NC_016863.1 945415 945678 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(945415..945678) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251422.1 CDS ybjC NC_016863.1 945848 946138 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 945848..946138 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251423.1 CDS mdaA NC_016863.1 946122 946844 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 946122..946844 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251424.1 CDS rimK NC_016863.1 946902 947804 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 946902..947804 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251425.1 CDS ybjN NC_016863.1 947901 948377 D similar to Escherichia coli putative sensory transduction regulator (AAC73940.1); putative cytoplasmic protein 947901..948377 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251426.1 CDS potF NC_016863.1 948726 949838 D similar to Escherichia coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); ABC superfamily periplasmic protein; putrescine ABC transporter periplasmic-binding protein 948726..949838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251427.1 CDS potG NC_016863.1 949926 951059 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 949926..951059 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251428.1 CDS potH NC_016863.1 951069 952022 D similar to Escherichia coli putrescine transport protein; permease (AAC73943.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 951069..952022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251429.1 CDS potI NC_016863.1 952019 952864 D similar to Escherichia coli putrescine transport protein; permease (AAC73944.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 952019..952864 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251430.1 CDS ybjO NC_016863.1 952938 953411 D putative inner membrane protein 952938..953411 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251431.1 CDS rumB NC_016863.1 953454 954584 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 953454..954584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251432.1 CDS sgaT NC_016863.1 954867 956210 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 954867..956210 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251433.1 CDS STMUK_0890 NC_016863.1 956240 956560 D similar to SgaT from Vibrio; putative inner membrane protein 956240..956560 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251434.1 CDS STMUK_0891 NC_016863.1 956570 958057 D similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 956570..958057 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251435.1 CDS artJ NC_016863.1 958276 959007 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); ABC superfamily binding protein; arginine transport system component complement(958276..959007) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251436.1 CDS artM NC_016863.1 959244 959912 R with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM complement(959244..959912) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251437.1 CDS artQ NC_016863.1 959912 960628 R with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ complement(959912..960628) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251438.1 CDS artI NC_016863.1 960635 961366 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); ABC superfamily binding protein; arginine transport system complement(960635..961366) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251439.1 CDS artP NC_016863.1 961384 962112 R With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit complement(961384..962112) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251440.1 CDS ybjP NC_016863.1 962342 962857 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; putative lipoprotein complement(962342..962857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251441.1 CDS STMUK_0898 NC_016863.1 962985 963308 D hypothetical protein 962985..963308 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251442.1 CDS ybjR NC_016863.1 963305 964135 D similar to Escherichia coli putative regulator (AAC73954.1); putative aminidase 963305..964135 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251443.1 CDS STMUK_0900 NC_016863.1 964132 965145 R similar to Escherichia coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); putative nucleoside-diphosphate-sugar epimerase complement(964132..965145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251444.1 CDS ybjT NC_016863.1 965241 966674 R similar to Escherichia coli putative dTDP-glucose enzyme (AAC73956.1); putative nucleoside-diphosphate-sugar epimerase complement(965241..966674) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251445.1 CDS ltaA NC_016863.1 966685 967686 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase complement(966685..967686) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251446.1 CDS poxB NC_016863.1 967725 969443 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(967725..969443) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251447.1 CDS hcr NC_016863.1 969601 970572 R similar to Escherichia coli putative enzyme (AAC73959.1); hcp gene product; HCP oxidoreductase complement(969601..970572) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251448.1 CDS hcp NC_016863.1 970581 972233 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(970581..972233) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251449.1 CDS ybjE NC_016863.1 972377 973276 R similar to Escherichia coli putative surface protein (AAC73961.1); putative inner membrane protein complement(972377..973276) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251450.1 CDS ybjD NC_016863.1 973478 975136 D similar to RecF protein; hypothetical protein 973478..975136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251451.1 CDS ybjX NC_016863.1 975133 976101 R similar to Escherichia coli putative enzyme (AAC73964.1); VirK-like protein complement(975133..976101) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251452.1 CDS ybjY NC_016863.1 976229 977347 D confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 976229..977347 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251453.1 CDS ybjZ NC_016863.1 977344 979290 D with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 977344..979290 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251454.1 CDS cspD NC_016863.1 979420 979641 R similar to Escherichia coli cold shock protein CspA (AAC73967.1); stationary phase-induced; stress response protein complement(979420..979641) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251455.1 CDS clpS NC_016863.1 979965 980285 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 979965..980285 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251456.1 CDS clpA NC_016863.1 980316 982592 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 980316..982592 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251457.1 CDS tnpA_6 NC_016863.1 982784 983242 D transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 982784..983242 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251458.1 CDS STMUK_0915 NC_016863.1 983705 984388 R similar to Escherichia coli IS150 putative transposase (AAC76582.1); putative integrase complement(983705..984388) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251459.1 CDS STMUK_0916 NC_016863.1 984559 984960 R putative cytoplasmic protein complement(984559..984960) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251460.1 CDS STMUK_0918 NC_016863.1 985298 985975 R similar to slsA in STM (gi|4324613); similar to STM3761; SlsA complement(985298..985975) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251461.1 CDS STMUK_0919 NC_016863.1 985995 986855 R putative cytoplasmic protein complement(985995..986855) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251462.1 CDS STMUK_0920 NC_016863.1 986964 987875 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 986964..987875 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251463.1 CDS infA NC_016863.1 987966 988184 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(987966..988184) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251464.1 CDS STMUK_0922 NC_016863.1 988112 988495 R putative inner membrane protein complement(988112..988495) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251465.1 CDS aat NC_016863.1 988496 989200 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(988496..989200) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251466.1 CDS cydC NC_016863.1 989245 990966 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(989245..990966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251467.1 CDS cydD NC_016863.1 990967 992733 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(990967..992733) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251468.1 CDS trxB NC_016863.1 992847 993815 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(992847..993815) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251469.1 CDS lrp NC_016863.1 994361 994855 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 994361..994855 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251470.1 CDS lolA NC_016863.1 999215 999829 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 999215..999829 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251471.1 CDS ycaJ NC_016863.1 999839 1001182 D similar to Escherichia coli putative polynucleotide enzyme (AAC73978.1); recombination factor protein RarA 999839..1001182 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251472.1 CDS serS NC_016863.1 1001441 1002733 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1001441..1002733 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251473.1 CDS dmsA NC_016863.1 1002970 1005414 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); anaerobic dimethyl sulfoxide reductase subunit A 1002970..1005414 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251474.1 CDS dmsB NC_016863.1 1005425 1006042 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); anaerobic dimethyl sulfoxide reductase subunit B 1005425..1006042 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251475.1 CDS dmsC NC_016863.1 1006044 1006907 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); anaerobic dimethyl sulfoxide reductase subunit C 1006044..1006907 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251476.1 CDS ycaD NC_016863.1 1007257 1008405 D similar to Escherichia coli putative transport (AAC73984.1); MFS family; putative MFS family transporter protein 1007257..1008405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251477.1 CDS ycaM NC_016863.1 1008623 1010044 D similar to Escherichia coli putative transport (AAC73985.1); APC family; putative amino-acid transporter 1008623..1010044 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251478.1 CDS pflA NC_016863.1 1010337 1011161 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1010337..1011161) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251479.1 CDS STMUK_0937 NC_016863.1 1011253 1011579 R putative cytoplasmic protein complement(1011253..1011579) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251480.1 CDS STMUK_0938 NC_016863.1 1011710 1012669 D SopD-like protein 1011710..1012669 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251481.1 CDS pflB NC_016863.1 1012745 1015027 R similar to Escherichia coli formate acetyltransferase 1 (AAC73989.1); induced anaerobically; pyruvate formate lyase I complement(1012745..1015027) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251482.1 CDS focA NC_016863.1 1015087 1015944 R similar to Escherichia coli probable formate transporter; formate channel 1 (AAC73990.1); FNT family; formate transporter complement(1015087..1015944) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251483.1 CDS ycaO NC_016863.1 1016349 1018109 R putative cytoplasmic protein complement(1016349..1018109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251484.1 CDS ycaP NC_016863.1 1018246 1018938 D putative inner membrane protein 1018246..1018938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251485.1 CDS serC NC_016863.1 1019124 1020212 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1019124..1020212 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251486.1 CDS aroA NC_016863.1 1020283 1021566 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1020283..1021566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251487.1 CDS ycaL NC_016863.1 1021709 1022470 D similar to Escherichia coli putative heat shock protein (AAC73995.1); has chaperone function; putative Zn-dependent protease 1021709..1022470 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251488.1 CDS cmk NC_016863.1 1022643 1023326 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1022643..1023326 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251489.1 CDS rpsA NC_016863.1 1023440 1025113 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the; 30S ribosomal protein S1 1023440..1025113 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251490.1 CDS ihfB NC_016863.1 1025269 1025553 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1025269..1025553 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251491.1 CDS ycaI NC_016863.1 1025783 1028047 D hypothetical protein 1025783..1028047 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251492.1 CDS msbA NC_016863.1 1028084 1029832 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1028084..1029832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251493.1 CDS lpxK NC_016863.1 1029829 1030806 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1029829..1030806 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251494.1 CDS ycaQ NC_016863.1 1030850 1032082 D putative cytoplasmic protein 1030850..1032082 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251495.1 CDS ycaR NC_016863.1 1032134 1032316 D hypothetical protein 1032134..1032316 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251496.1 CDS kdsB NC_016863.1 1032313 1033059 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1032313..1033059 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251497.1 CDS STMUK_0955 NC_016863.1 1033270 1034163 D hypothetical protein 1033270..1034163 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251498.1 CDS ycbC NC_016863.1 1034143 1034919 R hypothetical protein complement(1034143..1034919) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251499.1 CDS smtA NC_016863.1 1035055 1035858 D involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 1035055..1035858 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251500.1 CDS mukF NC_016863.1 1035851 1037173 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1035851..1037173 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251501.1 CDS mukE NC_016863.1 1037154 1037858 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1037154..1037858 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251502.1 CDS mukB NC_016863.1 1037858 1042324 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations resu; cell division protein MukB 1037858..1042324 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251503.1 CDS ycbB NC_016863.1 1042669 1044510 D similar to Escherichia coli putative amidase (AAC74011.1); hypothetical protein 1042669..1044510 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251504.1 CDS ycbK NC_016863.1 1044770 1045318 D putative outer membrane protein 1044770..1045318 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251505.1 CDS ycbL NC_016863.1 1045346 1045993 D putative metallo-beta-lactamase 1045346..1045993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251506.1 CDS aspC NC_016863.1 1046055 1047245 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1046055..1047245) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251507.1 CDS ompF NC_016863.1 1047430 1048521 R outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F complement(1047430..1048521) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251508.1 CDS asnC NC_016863.1 1049128 1050528 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(1049128..1050528) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251509.1 CDS STMUK_0967 NC_016863.1 1050729 1051190 R similar to Escherichia coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); putative leucine response regulator complement(1050729..1051190) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251510.1 CDS STMUK_0968 NC_016863.1 1051507 1052721 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1051507..1052721 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251511.1 CDS STMUK_0969 NC_016863.1 1052966 1054402 D similar to Escherichia coli inner membrane transport protein (AAC73118.1); Lrp family; putative transcriptional regulator 1052966..1054402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251512.1 CDS pncB NC_016863.1 1054480 1055682 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1054480..1055682) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251513.1 CDS STMUK_0971 NC_016863.1 1055877 1057169 R similar to Escherichia coli putative transposase (AAC74651.1); integrase complement(1055877..1057169) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251514.1 CDS STMUK_0972 NC_016863.1 1057214 1057462 R excisionase complement(1057214..1057462) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251515.1 CDS STMUK_0973 NC_016863.1 1057503 1057742 R hypothetical protein complement(1057503..1057742) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251516.1 CDS STMUK_0974 NC_016863.1 1057785 1058942 R hypothetical protein AAC26069.1 (gi|7467267); hypothetical protein complement(1057785..1058942) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251517.1 CDS STMUK_0975 NC_016863.1 1058905 1061790 R similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease complement(1058905..1061790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251518.1 CDS STMUK_0976 NC_016863.1 1061917 1062216 R hypothetical protein complement(1061917..1062216) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251519.1 CDS STMUK_0977 NC_016863.1 1062389 1062649 R hypothetical protein complement(1062389..1062649) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251520.1 CDS STMUK_0978 NC_016863.1 1062699 1063109 R probable regulatory protein (gi|7467281); regulatory protein complement(1062699..1063109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251521.1 CDS STMUK_0979 NC_016863.1 1063434 1063808 D probable regulatory protein (gi|7467282); regulatory protein 1063434..1063808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251522.1 CDS STMUK_0980 NC_016863.1 1063893 1064876 D probable replication protein (gi|7467283); regulatory protein 1063893..1064876 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251523.1 CDS STMUK_0981 NC_016863.1 1064879 1065628 D acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein 1064879..1065628 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251524.1 CDS STMUK_0982 NC_016863.1 1065639 1065986 D hypothetical protein 1065639..1065986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251525.1 CDS STMUK_0983 NC_016863.1 1065983 1066294 D hypothetical protein 1065983..1066294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251526.1 CDS STMUK_0984 NC_016863.1 1066372 1066662 D hypothetical protein 1066372..1066662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251527.1 CDS STMUK_0985 NC_016863.1 1066954 1067187 D hypothetical protein 1066954..1067187 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251528.1 CDS STMUK_0986 NC_016863.1 1067603 1068205 D hypothetical protein 1067603..1068205 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251529.1 CDS STMUK_0987 NC_016863.1 1068205 1068411 D similar to hypothetical protein SPAB_02252 (Pid: YP_001588468.1).; hypothetical protein 1068205..1068411 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251530.1 CDS STMUK_0988 NC_016863.1 1068414 1069025 D hypothetical protein 1068414..1069025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251531.1 CDS STMUK_0989 NC_016863.1 1069158 1069955 D DnaJ family; putative molecular chaperone 1069158..1069955 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251532.1 CDS STMUK_0990 NC_016863.1 1070022 1070339 D hypothetical protein 1070022..1070339 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251533.1 CDS STMUK_0991 NC_016863.1 1070513 1070638 D hypothetical protein 1070513..1070638 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251534.1 CDS STMUK_0992 NC_016863.1 1070774 1071223 R hypothetical protein complement(1070774..1071223) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251535.1 CDS STMUK_0993 NC_016863.1 1071584 1072096 R hypothetical protein complement(1071584..1072096) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251536.1 CDS STMUK_0994 NC_016863.1 1072627 1072875 D hypothetical protein 1072627..1072875 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251537.1 CDS STMUK_0995 NC_016863.1 1072859 1073311 D similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); lysozyme 1072859..1073311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251538.1 CDS STMUK_0996 NC_016863.1 1073329 1073808 D bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein 1073329..1073808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251539.1 CDS STMUK_0997 NC_016863.1 1074016 1074549 D hypothetical protein 1074016..1074549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251540.1 CDS STMUK_0998 NC_016863.1 1074506 1076644 D hypothetical protein 1074506..1076644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251541.1 CDS STMUK_0999 NC_016863.1 1076641 1076847 D similar to hypothetical protein SPC_2719 (Pid: YP_002638260.1).; hypothetical protein 1076641..1076847 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251542.1 CDS STMUK_1000 NC_016863.1 1077078 1078391 D hypothetical protein 1077078..1078391 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251543.1 CDS STMUK_1001 NC_016863.1 1078315 1080396 D similar to Escherichia coli ATP-dependent proteolytic subunit of ClpA-ClpP serine protease; heat shock protein F21.5 (AAC73540.1); Clp protease-like protein 1078315..1080396 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251544.1 CDS STMUK_1002 NC_016863.1 1080487 1080810 D putative RecA/RadA recombinase 1080487..1080810 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251545.1 CDS STMUK_1003 NC_016863.1 1080803 1081102 D ATP-binding sugar transporter-like protein 1080803..1081102 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251546.1 CDS STMUK_1004 NC_016863.1 1081083 1081649 D minor tail protein 1081083..1081649 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251547.1 CDS STMUK_1005 NC_016863.1 1081646 1082047 D minor tail protein 1081646..1082047 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251548.1 CDS STMUK_1006 NC_016863.1 1082059 1082808 D major tail protein 1082059..1082808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251549.1 CDS STMUK_1007 NC_016863.1 1082854 1083252 D minor tail protein 1082854..1083252 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251550.1 CDS STMUK_1008 NC_016863.1 1083249 1083578 D minor tail protein 1083249..1083578 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251551.1 CDS STMUK_1009 NC_016863.1 1083658 1086645 D similar to lambda phage H tail component (gi|2232364); minor tail protein 1083658..1086645 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251552.1 CDS STMUK_1010 NC_016863.1 1086642 1086974 D similar to lambda phage M tail component (gi|2232363); minor tail protein 1086642..1086974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251553.1 CDS STMUK_1011 NC_016863.1 1087073 1087570 D similar to OmpX (gi|2232362); attachment/invasion protein 1087073..1087570 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251554.1 CDS sodC NC_016863.1 1087687 1088220 R SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase complement(1087687..1088220) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251555.1 CDS STMUK_1013 NC_016863.1 1088310 1089005 D similar to lambda phage L tail component (gi|2232360); minor tail protein 1088310..1089005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251556.1 CDS STMUK_1014 NC_016863.1 1089015 1089752 D tail assembly protein 1089015..1089752 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251557.1 CDS STMUK_1015 NC_016863.1 1089650 1090354 D tail assembly protein 1089650..1090354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251558.1 CDS STMUK_1016 NC_016863.1 1090426 1093776 D similar to phage lambda protein J; host specificity protein J 1090426..1093776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251559.1 CDS STMUK_1017 NC_016863.1 1093815 1094057 D similar to hypothetical protein SeSA_A0709 (Pid: YP_002113672.1).; hypothetical protein 1093815..1094057 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251560.1 CDS STMUK_1018 NC_016863.1 1094111 1096549 D similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber protein 1094111..1096549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251561.1 CDS STMUK_1019 NC_016863.1 1096549 1097130 D similar to tail fiber assembly protein (gi|8927433); tail fiber assembly like-protein 1096549..1097130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251562.1 CDS sseI NC_016863.1 1097606 1098574 D secreted effector I (gi|8927434); secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein 1097606..1098574 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251563.1 CDS STMUK_1021 NC_016863.1 1098842 1099090 D similar to ISSfl3 orfC,D (Pid: YP_002638239.1).; hypothetical protein 1098842..1099090 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251564.1 CDS STMUK_1022 NC_016863.1 1099222 1099848 R hypothetical protein complement(1099222..1099848) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251565.1 CDS STMUK_1023 NC_016863.1 1099917 1100216 R hypothetical protein complement(1099917..1100216) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251566.1 CDS STMUK_1024 NC_016863.1 1100201 1100887 R hypothetical protein complement(1100201..1100887) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251567.1 CDS STMUK_1025 NC_016863.1 1101158 1101349 R MsgA-like protein complement(1101158..1101349) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251568.1 CDS pepN NC_016863.1 1101776 1104388 D similar to Escherichia coli aminopeptidase N (AAC74018.1); aminopeptidase N 1101776..1104388 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251569.1 CDS pyrD NC_016863.1 1104596 1105606 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays; dihydroorotate dehydrogenase 2 1104596..1105606 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251570.1 CDS ycbW NC_016863.1 1105772 1106314 D putative cytoplasmic protein 1105772..1106314 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251571.1 CDS STMUK_1029 NC_016863.1 1106311 1107420 R putative iron-sulfur protein complement(1106311..1107420) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251572.1 CDS rlmL NC_016863.1 1107519 1109627 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1107519..1109627 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251573.1 CDS uup NC_016863.1 1109640 1111547 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1109640..1111547 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251574.1 CDS pqiA NC_016863.1 1111562 1112815 D similar to Escherichia coli paraquat-inducible protein A (AAC74036.1); paraquat-inducible protein A 1111562..1112815 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251575.1 CDS pqiB NC_016863.1 1112820 1114460 D similar to Escherichia coli paraquat-inducible protein B (AAC74037.1); paraquat-inducible protein B 1112820..1114460 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251576.1 CDS ymbA NC_016863.1 1114457 1115020 D putative outer membrane protein 1114457..1115020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251577.1 CDS rmf NC_016863.1 1115276 1115443 D similar to Escherichia coli ribosome modulation factor (AAC74039.1); involved in dimerization of 70S ribosomes; ribosome modulation factor 1115276..1115443 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251578.1 CDS fabA NC_016863.1 1115543 1116061 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1115543..1116061) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251579.1 CDS lonH NC_016863.1 1116130 1117890 R similar to Escherichia coli putative ATP-dependent protease (AAC74041.1); putative protease complement(1116130..1117890) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251580.1 CDS ycbG NC_016863.1 1118076 1118528 D similar to Escherichia coli putative dehydrogenase (AAC74042.1); hypothetical protein 1118076..1118528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251581.1 CDS ompA NC_016863.1 1118600 1119652 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-fa; outer membrane protein A complement(1118600..1119652) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251582.1 CDS sulA NC_016863.1 1120009 1120518 R suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; SOS cell division inhibitor complement(1120009..1120518) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251583.1 CDS yccR NC_016863.1 1120735 1121340 D putative DNA transformation protein 1120735..1121340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251584.1 CDS yccS NC_016863.1 1121327 1123480 R efflux PET family; putative transporter complement(1121327..1123480) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251585.1 CDS yccF NC_016863.1 1123499 1123945 R hypothetical protein complement(1123499..1123945) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251586.1 CDS helD NC_016863.1 1124069 1126123 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1124069..1126123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251587.1 CDS mgsA NC_016863.1 1126159 1126617 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1126159..1126617) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251588.1 CDS yccT NC_016863.1 1126712 1127374 R hypothetical protein complement(1126712..1127374) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251589.1 CDS STMUK_1047 NC_016863.1 1127545 1127961 D putative cytoplasmic protein 1127545..1127961 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251590.1 CDS yccV NC_016863.1 1128006 1128323 R heat shock protein HspQ complement(1128006..1128323) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251591.1 CDS yccW NC_016863.1 1128381 1129592 R similar to Escherichia coli putative oxidoreductase (AAC74053.1); putative SAM-dependent methyltransferase complement(1128381..1129592) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251592.1 CDS STMUK_1050 NC_016863.1 1129807 1130355 D putative outer membrane protein 1129807..1130355 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251593.1 CDS STMUK_1051 NC_016863.1 1130381 1131160 D similar to Escherichia coli putative AraC-type regulatory protein (AAC73647.1); AraC family; regulatory protein 1130381..1131160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251594.1 CDS yccX NC_016863.1 1131209 1131490 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1131209..1131490 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251595.1 CDS yccK NC_016863.1 1131487 1131816 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE complement(1131487..1131816) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251596.1 CDS yccA NC_016863.1 1131903 1132562 R similar to Escherichia coli putative carrier/transport protein (AAC74056.1); TegT family; hypothetical protein complement(1131903..1132562) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251597.1 CDS pipA NC_016863.1 1133183 1133863 R similar to Gifsy prophage protein GtgA; GogA (STM1026); pathogenicity island-encoded protein A complement(1133183..1133863) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251598.1 CDS pipB NC_016863.1 1134085 1134960 R pathogenicity island-encoded protein B; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein complement(1134085..1134960) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251599.1 CDS STMUK_1058 NC_016863.1 1135178 1135498 D putative inner membrane protein 1135178..1135498 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251600.1 CDS pipC NC_016863.1 1135508 1135849 R similar to ipgE of Shigella; invasion gene E protein (gi|2582386); similar to type III secretion chaperones SigE and CesT; pathogenicity island-encoded protein C complement(1135508..1135849) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251601.1 CDS sopB NC_016863.1 1135866 1137551 R SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein (gi|2582385); secreted by SPI-1; type III secretion; secreted effector protein complement(1135866..1137551) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251602.1 CDS STMUK_1061 NC_016863.1 1137883 1138053 D putative cytoplasmic protein 1137883..1138053 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251603.1 CDS STMUK_1062 NC_016863.1 1138054 1138164 R putative cytoplasmic protein complement(1138054..1138164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251604.1 CDS pipD NC_016863.1 1138273 1139742 R similar to dipeptidase A; pathogenicity island-encoded protein D complement(1138273..1139742) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251605.1 CDS copS NC_016863.1 1139915 1141279 R histidine kinase; similar to Escherichia coli putative 2-component sensor protein (AAC75034.1); copper resistance protein complement(1139915..1141279) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251606.1 CDS copR NC_016863.1 1141272 1142018 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc; transcriptional regulatory protein YedW complement(1141272..1142018) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251607.1 CDS STMUK_1066 NC_016863.1 1142088 1142498 D putative periplasmic protein; hypothetical protein 1142088..1142498 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251608.1 CDS hpaC NC_016863.1 1142831 1143343 R 4-hydroxyphenylacetate catabolism complement(1142831..1143343) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251609.1 CDS hpaB NC_016863.1 1143361 1144923 R 4-hydroxyphenylacetate catabolism complement(1143361..1144923) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251610.1 CDS hpaR NC_016863.1 1145141 1145581 R 4-hydroxyphenylacetate catabolism complement(1145141..1145581) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251611.1 CDS hpaG NC_016863.1 1145856 1147145 D similar to Escherichia coli putative isomerase (AAC74264.1); 4-hydroxyphenylacetate catabolism 1145856..1147145 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251612.1 CDS hpaE NC_016863.1 1147142 1148608 D similar to Escherichia coli aldehyde dehydrogenase; prefers NADP over NAD (AAC74382.1); 4-hydroxyphenylacetate catabolism 1147142..1148608 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251613.1 CDS hpaD NC_016863.1 1148610 1149461 D 4-hydroxyphenylacetate catabolism 1148610..1149461 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251614.1 CDS hpaF NC_016863.1 1149471 1149851 D 4-hydroxyphenylacetate catabolism 1149471..1149851 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251615.1 CDS hpaH NC_016863.1 1149994 1150797 D similar to Escherichia coli 2-keto-4-pentenoate hydratase (AAC73453.1); 4-hydroxyphenylacetate catabolism 1149994..1150797 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251616.1 CDS hpaI NC_016863.1 1150808 1151599 D 4-hydroxyphenylacetate catabolism 1150808..1151599 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251617.1 CDS hpaX NC_016863.1 1151671 1153047 D similar to Escherichia coli putative transport protein (AAC75306.1); 4-hydroxyphenylacetate catabolism 1151671..1153047 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251618.1 CDS hpaA NC_016863.1 1153057 1153953 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); 4-hydroxyphenylacetate catabolism 1153057..1153953 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251619.1 CDS STMUK_1078 NC_016863.1 1153967 1154905 D hypothetical protein 1153967..1154905 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251620.1 CDS STMUK_1079 NC_016863.1 1155313 1155675 R RssC (gi|12004175); hypothetical protein complement(1155313..1155675) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251621.1 CDS yccD NC_016863.1 1156329 1156634 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1156329..1156634) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251622.1 CDS cbpA NC_016863.1 1156634 1157554 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA complement(1156634..1157554) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251623.1 CDS scsA NC_016863.1 1157789 1158151 D suppressor for copper-sensitivity A (gi|2327003); putative copper binding protein; suppression of copper sensitivity protein A 1157789..1158151 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251624.1 CDS scsB NC_016863.1 1158200 1160086 D suppressor for copper-sensitivity B (gi|2327004); suppression of copper sensitivity; suppression of copper sensitivity protein 1158200..1160086 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251625.1 CDS scsC NC_016863.1 1160083 1160706 D suppressor for copper-sensitivity C (gi|2327005); suppression of copper sensitivity; suppression of copper sensitivity protein 1160083..1160706 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251626.1 CDS scsD NC_016863.1 1160696 1161202 D suppressor for copper-sensitivity D (gi|2327006); suppression of copper sensitivity; suppression of copper sensitivity protein 1160696..1161202 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251627.1 CDS agp NC_016863.1 1161335 1162576 D glucose-1-phosphatase precursor (SW:AGP_SALTY); glucose-1-phosphatase/inositol phosphatase 1161335..1162576 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251628.1 CDS yccJ NC_016863.1 1162610 1162837 R hypothetical protein complement(1162610..1162837) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251629.1 CDS wraB NC_016863.1 1162858 1163454 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1162858..1163454) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251630.1 CDS ymdF NC_016863.1 1163839 1164006 D putative cytoplasmic protein 1163839..1164006 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251631.1 CDS ycdC NC_016863.1 1164143 1164781 D similar to Escherichia coli putative tet operon regulator (AAC74098.1); TetR/AcrR family; putative transcriptional repressor 1164143..1164781 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251632.1 CDS STMUK_1091 NC_016863.1 1164778 1165173 R hypothetical protein complement(1164778..1165173) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251633.1 CDS STMUK_1092 NC_016863.1 1165232 1169194 R PUTA protein (SW:PUTA_SALTY); bifunctional inplasma membrane proline dehydrogenase andpyrroline-5-carboxylate dehydrogenase OR in cytoplasm atranscriptional repressor; plasma membranepyrroline-5-carboxylate dehydrogenase; cytoplasmictranscriptional repres; plasma membrane proline dehydrogenase complement(1165232..1169194) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251634.1 CDS putP NC_016863.1 1169616 1171124 D sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; major sodium/proline symporter 1169616..1171124 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251635.1 CDS STMUK_1094 NC_016863.1 1171951 1172805 D similar to E. coli PhoB-dependent, ATP-binding phoregulon component; may be helicase; induced by Pstarvation (AAC74105.1); Blastp hit to AAC74105.1 (354aa); PhoB-dependent ATP-binding pho reguloncomponent 1171951..1172805 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251636.1 CDS STMUK_1095 NC_016863.1 1172911 1173792 R putative transcriptional regulator complement(1172911..1173792) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251637.1 CDS STMUK_1096 NC_016863.1 1174077 1175573 R similar to Escherichia coli putative cotransporter (AAC76702.1); putative sodium/glucose cotransporter complement(1174077..1175573) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251638.1 CDS STMUK_1097 NC_016863.1 1175910 1176590 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1175910..1176590) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251639.1 CDS STMUK_1098 NC_016863.1 1177096 1178256 D N-acetylneuraminic acid mutarotase 1177096..1178256 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251640.1 CDS STMUK_1099 NC_016863.1 1178302 1178994 D putative outer membrane protein 1178302..1178994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251641.1 CDS STMUK_1100 NC_016863.1 1179277 1180557 D similar to Escherichia coli putative transport protein (AAC77235.1); putative sialic acid transporter 1179277..1180557 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251642.1 CDS STMUK_1101 NC_016863.1 1180568 1181674 D similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 1180568..1181674 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251643.1 CDS ycdW NC_016863.1 1182518 1183456 D similar to Escherichia coli putative dehydrogenase (AAC74117.1); putative oxidoreductase 1182518..1183456 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251644.1 CDS ycdX NC_016863.1 1183541 1184278 D similar to hydrolases of the PHP family; putative hydrolase 1183541..1184278 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251645.1 CDS ycdY NC_016863.1 1184302 1184856 D similar to Escherichia coli putative oxidoreductase component (AAC74119.1); putative oxidoreductase 1184302..1184856 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251646.1 CDS ycdZ NC_016863.1 1184909 1185439 D hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); putative inner membrane protein 1184909..1185439 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251647.1 CDS csgG NC_016863.1 1185478 1186311 R curli production assembly/transport component CsgG precursor (SW:CSGG_SALTY); putative curli operon transcriptional regulator complement(1185478..1186311) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251648.1 CDS csgF NC_016863.1 1186338 1186754 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli sec; curli assembly protein CsgF complement(1186338..1186754) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251649.1 CDS csgE NC_016863.1 1186781 1187176 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curl; curli assembly protein CsgE complement(1186781..1187176) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251650.1 CDS csgD NC_016863.1 1187181 1187831 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1187181..1187831) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251651.1 CDS csgB NC_016863.1 1188586 1189041 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1188586..1189041 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251652.1 CDS csgA NC_016863.1 1189083 1189538 D major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; cryptic curlin major subunit 1189083..1189538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251653.1 CDS csgC NC_016863.1 1189600 1189926 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; putative autoagglutination protein 1189600..1189926 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251654.1 CDS ymdA NC_016863.1 1190057 1190377 D hypothetical protein in csgC-mdoG intergenic region precursor (SW:YMDA_SALTY); hypothetical protein 1190057..1190377 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251655.1 CDS STMUK_1115 NC_016863.1 1190466 1191005 D similar to Escherichia coli putative polyprotein (AAC74129.1); putative ACR related to the C-terminal domain of histone macroH2A1; hypothetical protein 1190466..1191005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251656.1 CDS ymdC NC_016863.1 1190944 1192428 D similar to Escherichia coli putative synthase (AAC74130.1); putative phospholipase 1190944..1192428 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251657.1 CDS mdoC NC_016863.1 1192445 1193599 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein complement(1192445..1193599) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251658.1 CDS opgG NC_016863.1 1193871 1195406 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1193871..1195406 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251659.1 CDS mdoH NC_016863.1 1195399 1197942 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1195399..1197942 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251660.1 CDS yceK NC_016863.1 1198016 1198243 D hypothetical protein 1198016..1198243 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251661.1 CDS msyB NC_016863.1 1198244 1198618 R similar to Escherichia coli acidic protein; suppresses mutants lacking function of protein export (AAC74135.1); hypothetical protein complement(1198244..1198618) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251662.1 CDS yceE NC_016863.1 1198700 1199914 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1198700..1199914) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251663.1 CDS htrB NC_016863.1 1200069 1200989 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1200069..1200989) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251664.1 CDS yceA NC_016863.1 1201209 1202261 D hypothetical protein 1201209..1202261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251665.1 CDS yceI NC_016863.1 1202313 1202888 R hypothetical protein complement(1202313..1202888) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251666.1 CDS STMUK_1126 NC_016863.1 1202885 1203457 R similar to Escherichia coli putative cytochrome (AAC74141.1); putative inner membrane protein complement(1202885..1203457) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251667.1 CDS yceO NC_016863.1 1203720 1203833 R putative inner membrane protein complement(1203720..1203833) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251668.1 CDS solA NC_016863.1 1203874 1204992 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(1203874..1204992) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251669.1 CDS yceP NC_016863.1 1205105 1205359 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2; biofilm formation regulatory protein BssS complement(1205105..1205359) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251670.1 CDS dinI NC_016863.1 1205649 1205894 R similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing; DNA damage-inducible protein I complement(1205649..1205894) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251671.1 CDS pyrC NC_016863.1 1205968 1207014 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1205968..1207014) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251672.1 CDS yceB NC_016863.1 1207119 1207679 R hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein complement(1207119..1207679) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251673.1 CDS grxB NC_016863.1 1207804 1208451 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1207804..1208451) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251674.1 CDS yceL NC_016863.1 1208515 1209723 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1208515..1209723) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251675.1 CDS rimJ NC_016863.1 1209960 1210544 D similar to Escherichia coli acetylase; acetylates N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); ribosomal-protein-S5-alanine N-acetyltransferase 1209960..1210544 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251676.1 CDS yceH NC_016863.1 1210580 1211227 D hypothetical protein 1210580..1211227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251677.1 CDS mviM NC_016863.1 1211229 1212152 D virulence factor MviM (SW:MVIM_SALTY); putative virulence protein 1211229..1212152 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251678.1 CDS mviN NC_016863.1 1212417 1213991 D virulence factor MviN (SW:MVIN_SALTY); putative virulence protein 1212417..1213991 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251679.1 CDS flgN NC_016863.1 1214073 1214495 R flagella synthesis protein FlgN (SW:FLGN_SALTY); putative FlgK/FlgL export chaperone complement(1214073..1214495) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251680.1 CDS flgM NC_016863.1 1214500 1214793 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1214500..1214793) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251681.1 CDS flgA NC_016863.1 1214885 1215544 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1214885..1215544) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251682.1 CDS flgB NC_016863.1 1215701 1216117 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1215701..1216117 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251683.1 CDS flgC NC_016863.1 1216121 1216525 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1216121..1216525 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251684.1 CDS flgD NC_016863.1 1216537 1217235 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella p; flagellar basal body rod modification protein 1216537..1217235 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251685.1 CDS flgE NC_016863.1 1217262 1218473 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1217262..1218473 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251686.1 CDS flgF NC_016863.1 1218494 1219249 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1218494..1219249 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251687.1 CDS flgG NC_016863.1 1219263 1220045 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1219263..1220045 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251688.1 CDS flgH NC_016863.1 1220100 1220798 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1220100..1220798 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251689.1 CDS flgI NC_016863.1 1220810 1221907 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associa; flagellar basal body P-ring protein 1220810..1221907 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251690.1 CDS flgJ NC_016863.1 1221907 1222857 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1221907..1222857 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251691.1 CDS flgK NC_016863.1 1222922 1224583 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1222922..1224583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251692.1 CDS flgL NC_016863.1 1224598 1225551 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1224598..1225551 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251693.1 CDS rne NC_016863.1 1225808 1229011 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(1225808..1229011) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251694.1 CDS rluC NC_016863.1 1229585 1230544 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1229585..1230544 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251695.1 CDS STMUK_1155 NC_016863.1 1230700 1231443 D putative inner membrane lipoprotein 1230700..1231443 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251696.1 CDS STMUK_1156 NC_016863.1 1231649 1231873 D similar to hypothetical protein SNSL254_A1286 (Pid: YP_002040442.1).; hypothetical protein 1231649..1231873 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251697.1 CDS maf NC_016863.1 1231945 1232529 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1231945..1232529) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251698.1 CDS yceD NC_016863.1 1232727 1233248 D hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1232727..1233248 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251699.1 CDS rpmF NC_016863.1 1233300 1233473 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1233300..1233473 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251700.1 CDS plsX NC_016863.1 1233607 1234686 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1233607..1234686 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251701.1 CDS fabH NC_016863.1 1234766 1235719 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioester; 3-oxoacyl-ACP synthase 1234766..1235719 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251702.1 CDS fabD NC_016863.1 1235735 1236664 D malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); acyl carrier protein S-malonyltransferase 1235735..1236664 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251703.1 CDS fabG NC_016863.1 1236677 1237411 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1236677..1237411 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251704.1 CDS acpP NC_016863.1 1237567 1237803 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1237567..1237803 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251705.1 CDS fabF NC_016863.1 1237889 1239130 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1237889..1239130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251706.1 CDS pabC NC_016863.1 1239254 1240063 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1239254..1240063 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251707.1 CDS yceG NC_016863.1 1240066 1241088 D similar to Escherichia coli putative thymidylate kinase (AAC74181.1); hypothetical protein 1240066..1241088 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251708.1 CDS tmk NC_016863.1 1241078 1241719 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1241078..1241719 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251709.1 CDS holB NC_016863.1 1241716 1242720 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1241716..1242720 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251710.1 CDS ycfH NC_016863.1 1242731 1243528 D putative metallodependent hydrolase 1242731..1243528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251711.1 CDS ptsG NC_016863.1 1243823 1245256 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system glucose-specific transporter subunit IIBC 1243823..1245256 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251712.1 CDS fhuE NC_016863.1 1245341 1247515 R similar to Escherichia coli outer membrane receptor for ferric iron uptake (AAC74186.1); receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; ferric-rhodotorulic acid outer membrane transporter complement(1245341..1247515) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251713.1 CDS ycfF NC_016863.1 1247857 1248216 D purine nucleoside phosphoramidase 1247857..1248216 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251714.1 CDS ycfL NC_016863.1 1248219 1248593 D putative outer membrane lipoprotein 1248219..1248593 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251715.1 CDS ycfM NC_016863.1 1248607 1249245 D putative outer membrane lipoprotein 1248607..1249245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251716.1 CDS thiK NC_016863.1 1249226 1250050 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1249226..1250050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251717.1 CDS nagZ NC_016863.1 1250061 1251086 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1250061..1251086 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251718.1 CDS ycfP NC_016863.1 1251111 1251653 D hypothetical protein 1251111..1251653 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251719.1 CDS ndh NC_016863.1 1251908 1253212 D similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase; respiratory NADH dehydrogenase 2 1251908..1253212 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251720.1 CDS ycfJ NC_016863.1 1253391 1253930 D hypothetical protein 1253391..1253930 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251721.1 CDS ycfQ NC_016863.1 1254005 1254640 R TetR/AcrR family; putative transcriptional repressor complement(1254005..1254640) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251722.1 CDS ycfR NC_016863.1 1254882 1255139 D putative outer membrane protein 1254882..1255139 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251723.1 CDS ycfS NC_016863.1 1255236 1256201 R hypothetical protein complement(1255236..1256201) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251724.1 CDS mfd NC_016863.1 1256349 1259795 R similar to Escherichia coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); results in preferential repair of transcribed DNA; transcription-repair coupling factor complement(1256349..1259795) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251725.1 CDS ycfU NC_016863.1 1260022 1261332 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1260022..1261332 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251726.1 CDS lolD NC_016863.1 1261325 1262026 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1261325..1262026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251727.1 CDS ycfW NC_016863.1 1262026 1263270 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1262026..1263270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251728.1 CDS ycfX NC_016863.1 1263299 1264210 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1263299..1264210 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251729.1 CDS cobB NC_016863.1 1264229 1265050 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1264229..1265050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251730.1 CDS potD NC_016863.1 1265132 1266178 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein complement(1265132..1266178) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251731.1 CDS potC NC_016863.1 1266203 1266982 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1266203..1266982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251732.1 CDS sifA NC_016863.1 1267298 1268308 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isopr; secreted effector protein complement(1267298..1268308) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251733.1 CDS potB NC_016863.1 1268637 1269500 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(1268637..1269500) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251734.1 CDS potA NC_016863.1 1269484 1270620 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(1269484..1270620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251735.1 CDS pepT NC_016863.1 1270871 1272100 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1270871..1272100 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251736.1 CDS tnpA_6 NC_016863.1 1272311 1272769 D transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 1272311..1272769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251737.1 CDS ycfD NC_016863.1 1274189 1275310 R putative cytoplasmic protein complement(1274189..1275310) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251738.1 CDS phoQ NC_016863.1 1275391 1276854 R virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; sensor protein PhoQ complement(1275391..1276854) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251739.1 CDS phoP NC_016863.1 1276854 1277528 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1276854..1277528) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251740.1 CDS purB NC_016863.1 1277652 1279022 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1277652..1279022) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251741.1 CDS ycfC NC_016863.1 1279026 1279673 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1279026..1279673) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251742.1 CDS mnmA NC_016863.1 1279754 1280905 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1279754..1280905) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251743.1 CDS ymfB NC_016863.1 1280914 1281375 R similar to Escherichia coli putative phosphohydrolase (AAC74218.1); putative MutT-like protein complement(1280914..1281375) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251744.1 CDS STMUK_1204 NC_016863.1 1281387 1281716 R hypothetical protein complement(1281387..1281716) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251745.1 CDS ymfC NC_016863.1 1281713 1282378 R putative ribosomal large subunit pseudouridine synthase complement(1281713..1282378) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251746.1 CDS icdA NC_016863.1 1282550 1283800 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1282550..1283800 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251747.1 CDS STMUK_1207 NC_016863.1 1284248 1285372 D putative cytoplasmic protein 1284248..1285372 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251748.1 CDS STMUK_1208 NC_016863.1 1285829 1286032 R similar to hypothetical protein SPAB_02132 (Pid: YP_001588348.1).; hypothetical protein complement(1285829..1286032) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251749.1 CDS envF NC_016863.1 1286354 1287142 R probable lipoprotein EnvF precursor (SW:ENVF_SALTY); putative envelope lipoprotein complement(1286354..1287142) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251750.1 CDS msgA NC_016863.1 1287631 1287870 R virulence protein MsgA (SW:MSGA_SALTY); reduced mouse virulence; similar to STM2231 and STM2244; macrophage survival protein complement(1287631..1287870) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251751.1 CDS envE NC_016863.1 1288061 1288582 R probable lipoprotein EnvE precursor (SW:ENVE_SALTY); putative envelope protein complement(1288061..1288582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251752.1 CDS STMUK_1212 NC_016863.1 1288997 1289209 R cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein complement(1288997..1289209) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251753.1 CDS pagD NC_016863.1 1289341 1289604 R (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PAGD precursor complement(1289341..1289604) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251754.1 CDS pagC NC_016863.1 1290416 1290973 D (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PAGC precursor 1290416..1290973 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251755.1 CDS pliC NC_016863.1 1292210 1292554 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1292210..1292554) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251756.1 CDS STMUK_1217 NC_016863.1 1293257 1293529 D putative cytoplasmic protein 1293257..1293529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251757.1 CDS STMUK_1218 NC_016863.1 1293681 1294148 D similar to Escherichia coli small heat shock protein (AAC76710.1); putative molecular chaperone 1293681..1294148 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251758.1 CDS STMUK_1219 NC_016863.1 1294487 1295530 D putative cytoplasmic protein 1294487..1295530 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251759.1 CDS STMUK_1220 NC_016863.1 1295613 1296143 R similar to Escherichia coli putative cytochrome (AAC75040.1); putative inner membrane protein complement(1295613..1296143) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251760.1 CDS STMUK_1221 NC_016863.1 1296292 1296606 R putative outer membrane lipoprotein complement(1296292..1296606) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251761.1 CDS STMUK_1222 NC_016863.1 1297288 1298922 D putative substrate-binding protein (gi|2337942); putative ABC transporter periplasmic binding protein 1297288..1298922 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251762.1 CDS STMUK_1223 NC_016863.1 1298922 1299896 D putative transmembrane protein (gi|2337943); putative ABC transporter protein 1298922..1299896 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251763.1 CDS STMUK_1224 NC_016863.1 1299886 1300698 D putative transmembrane protein (gi|2337944); putative ABC transporter protein 1299886..1300698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251764.1 CDS STMUK_1225 NC_016863.1 1300692 1301489 D putative ATPase (gi|2337945); contain duplicated ATPase domain; ABC transporter ATP-binding protein 1300692..1301489 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251765.1 CDS STMUK_1226 NC_016863.1 1301483 1302073 D putative ATPase (gi|2337946); contains duplicated ATPase domain; ABC transporter ATP-binding protein 1301483..1302073 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251766.1 CDS STMUK_1227 NC_016863.1 1302155 1303288 R putative inner membrane protein complement(1302155..1303288) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251767.1 CDS STMUK_1228 NC_016863.1 1303482 1303808 D putative cytoplasmic protein 1303482..1303808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251768.1 CDS STMUK_1230 NC_016863.1 1304005 1304652 D similar to C-terminus of adhesion lipoprotein; hypothetical protein 1304005..1304652 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251769.1 CDS aadA NC_016863.1 1304761 1305549 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1304761..1305549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251770.1 CDS STMUK_1232 NC_016863.1 1305694 1306287 D contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 1305694..1306287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251771.1 CDS STMUK_1233 NC_016863.1 1306356 1307204 D similar to Escherichia coli putative transcriptional regulator (AAC74246.1); putative transcriptional regulator 1306356..1307204 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251772.1 CDS STMUK_1234 NC_016863.1 1307459 1307707 R putative cytoplasmic protein complement(1307459..1307707) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251773.1 CDS STMUK_1235 NC_016863.1 1307786 1307935 R putative cytoplasmic protein complement(1307786..1307935) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251774.1 CDS STMUK_1236 NC_016863.1 1308018 1308563 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1308018..1308563 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251775.1 CDS yeaS NC_016863.1 1308760 1309398 D leucine export protein LeuE 1308760..1309398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251776.1 CDS yeaR NC_016863.1 1309571 1309933 D putative cytoplasmic protein 1309571..1309933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251777.1 CDS yoaG NC_016863.1 1309936 1310118 D putative cytoplasmic protein 1309936..1310118 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251778.1 CDS STMUK_1240 NC_016863.1 1310348 1310989 D putative nitric oxide reductase 1310348..1310989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251779.1 CDS yeaQ NC_016863.1 1311304 1311552 D hypothetical protein 1311304..1311552 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251780.1 CDS yaoF NC_016863.1 1311985 1312236 D putative hemolysin 1311985..1312236 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251781.1 CDS STMUK_1243 NC_016863.1 1312305 1312616 D hypothetical protein 1312305..1312616 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251782.1 CDS yeaO NC_016863.1 1312602 1312949 R putative cytoplasmic protein complement(1312602..1312949) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251783.1 CDS yeaN NC_016863.1 1313068 1314252 R similar to Escherichia coli putative amino acid/amine transport protein (AAC74861.1); MFS family; putative amino acid/amine transport protein complement(1313068..1314252) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251784.1 CDS yeaM NC_016863.1 1314353 1315147 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74860.1); AraC/XylS family; putative regulatory protein 1314353..1315147 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251785.1 CDS yeaL NC_016863.1 1315127 1315573 R putative inner membrane protein complement(1315127..1315573) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251786.1 CDS STMUK_1248 NC_016863.1 1315779 1315886 D putative inner membrane protein 1315779..1315886 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251787.1 CDS yeaK NC_016863.1 1315883 1316401 R putative cytoplasmic protein complement(1315883..1316401) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251788.1 CDS yeaJ NC_016863.1 1316451 1317944 R contains diguanylate cyclase/phosphodiesterase domain 1; putative methyl-accepting chemotaxis protein complement(1316451..1317944) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251789.1 CDS yeaH NC_016863.1 1318585 1319871 R hypothetical protein complement(1318585..1319871) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251790.1 CDS yeaG NC_016863.1 1319994 1321928 R putative serine protein kinase complement(1319994..1321928) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251791.1 CDS mipA NC_016863.1 1322355 1323101 D scaffolding protein for murein-synthesizing holoenzyme; MltA-interacting protein A 1322355..1323101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251792.1 CDS STMUK_1254 NC_016863.1 1323391 1324587 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); arylsulfatase regulator 1323391..1324587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251793.1 CDS STMUK_1255 NC_016863.1 1324684 1325541 D similar to Escherichia coli putative aldehyde reductase (AAC74851.1); putative aldehyde reductase 1324684..1325541 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251794.1 CDS yeaD NC_016863.1 1325640 1326524 R aldose 1-epimerase complement(1325640..1326524) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251795.1 CDS gapA NC_016863.1 1326859 1327854 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(1326859..1327854) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251796.1 CDS yeaA NC_016863.1 1328166 1328609 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1328166..1328609 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251797.1 CDS yeaC NC_016863.1 1328651 1328929 D putative cytoplasmic protein 1328651..1328929 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251798.1 CDS pncA NC_016863.1 1329281 1329937 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1329281..1329937) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251799.1 CDS ansA NC_016863.1 1329964 1330980 R converts asparagine to aspartate and ammonia; asparaginase complement(1329964..1330980) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251800.1 CDS sppA NC_016863.1 1331076 1332932 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1331076..1332932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251801.1 CDS ydjA NC_016863.1 1333106 1333657 D hypothetical protein 1333106..1333657 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251802.1 CDS selD NC_016863.1 1333775 1334818 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1333775..1334818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251803.1 CDS topB NC_016863.1 1334823 1336772 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1334823..1336772 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251804.1 CDS gdhA NC_016863.1 1336802 1338145 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1336802..1338145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251805.1 CDS STMUK_1267 NC_016863.1 1338384 1338659 D hypothetical protein 1338384..1338659 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251806.1 CDS STMUK_1268 NC_016863.1 1338619 1339035 R MutT; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(1338619..1339035) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251807.1 CDS xthA NC_016863.1 1339108 1339914 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1339108..1339914) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251808.1 CDS argD NC_016863.1 1340360 1341586 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxo; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1340360..1341586 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251809.1 CDS astA NC_016863.1 1341577 1342611 D arginine succinyltransferase 1341577..1342611 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251810.1 CDS astD NC_016863.1 1342608 1344086 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1342608..1344086 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251811.1 CDS astB NC_016863.1 1344083 1345426 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1344083..1345426 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251812.1 CDS astE NC_016863.1 1345419 1346387 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1345419..1346387 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251813.1 CDS spy NC_016863.1 1346723 1347208 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1346723..1347208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251814.1 CDS STMUK_1276 NC_016863.1 1347283 1348191 R 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease complement(1347283..1348191) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251815.1 CDS nadE NC_016863.1 1348285 1349112 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli; NAD synthetase complement(1348285..1349112) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251816.1 CDS osmE NC_016863.1 1349331 1349672 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1349331..1349672 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251817.1 CDS celA NC_016863.1 1349973 1350293 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl gr; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1349973..1350293 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251818.1 CDS celB NC_016863.1 1350376 1351734 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl gr; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1350376..1351734 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251819.1 CDS celC NC_016863.1 1351785 1352132 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1351785..1352132 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251820.1 CDS celD NC_016863.1 1352143 1352985 D represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1352143..1352985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251821.1 CDS celF NC_016863.1 1353110 1354465 D similar to Escherichia coli phospho-beta-glucosidase; cryptic (AAC74804.1); phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase 1353110..1354465 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251822.1 CDS celG NC_016863.1 1354478 1355236 D hypothetical protein 1354478..1355236 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251823.1 CDS katE NC_016863.1 1355280 1357532 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(1355280..1357532) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251824.1 CDS cedA NC_016863.1 1357897 1358139 D affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division modulator 1357897..1358139 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251825.1 CDS ydjN NC_016863.1 1358241 1359632 R similar to Escherichia coli part of a kinase (AAC74799.1); kinase/transporter-like protein complement(1358241..1359632) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251826.1 CDS ydjM NC_016863.1 1359769 1360368 R LexA-regulated gene; hypothetical protein complement(1359769..1360368) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251827.1 CDS yniC NC_016863.1 1360506 1361174 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(1360506..1361174) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251828.1 CDS yniB NC_016863.1 1361323 1361859 D putative regulatory protein 1361323..1361859 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251829.1 CDS STMUK_1291 NC_016863.1 1361902 1362762 R putative cytoplasmic protein complement(1361902..1362762) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251830.1 CDS ydiZ NC_016863.1 1362869 1363159 R putative cytoplasmic protein complement(1362869..1363159) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251831.1 CDS pfkB NC_016863.1 1363256 1364188 R similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); 6-phosphofructokinase complement(1363256..1364188) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251832.1 CDS ydiY NC_016863.1 1364477 1365235 D salt-inducible; putative outer membrane protein 1364477..1365235 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251833.1 CDS STMUK_1295 NC_016863.1 1365284 1366243 R putative outer membrane protein complement(1365284..1366243) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251834.1 CDS STMUK_1296 NC_016863.1 1366386 1366700 D putative inner membrane protein 1366386..1366700 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251835.1 CDS STMUK_1297 NC_016863.1 1366697 1367551 D putative DNA/RNA non-specific endonuclease 1366697..1367551 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251836.1 CDS STMUK_1298 NC_016863.1 1367724 1367930 D putative inner membrane protein 1367724..1367930 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251837.1 CDS rfc NC_016863.1 1368253 1369476 R O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase complement(1368253..1369476) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251838.1 CDS thrS NC_016863.1 1370368 1372296 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to; threonyl-tRNA synthetase 1370368..1372296 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251839.1 CDS infC NC_016863.1 1372408 1372842 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes fo; translation initiation factor IF-3 1372408..1372842 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251840.1 CDS rpmI NC_016863.1 1372938 1373135 D similar to Escherichia coli 50S ribosomal subunit protein A (AAC74787.1); 50S ribosomal protein L35 1372938..1373135 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251841.1 CDS rplT NC_016863.1 1373186 1373542 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1373186..1373542 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251842.1 CDS pheS NC_016863.1 1373844 1374827 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium; phenylalanyl-tRNA synthetase subunit alpha 1373844..1374827 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251843.1 CDS pheT NC_016863.1 1374843 1377230 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions; phenylalanyl-tRNA synthetase subunit beta 1374843..1377230 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251844.1 CDS ihfA NC_016863.1 1377235 1377534 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1377235..1377534 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251845.1 CDS btuC NC_016863.1 1377737 1378717 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1377737..1378717 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251846.1 CDS btuE NC_016863.1 1378809 1379360 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; putative glutathione peroxidase 1378809..1379360 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251847.1 CDS btuD NC_016863.1 1379360 1380109 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1379360..1380109 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251848.1 CDS nlpC NC_016863.1 1380186 1380650 D similar to Escherichia coli lipoprotein (AAC74778.1); lipoprotein 1380186..1380650 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251849.1 CDS ydiV NC_016863.1 1380964 1381677 D putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 1380964..1381677 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251850.1 CDS ydiU NC_016863.1 1381739 1383181 D hypothetical protein 1381739..1383181 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251851.1 CDS ydiE NC_016863.1 1383216 1383407 R hypothetical protein complement(1383216..1383407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251852.1 CDS aroH NC_016863.1 1383564 1384610 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1383564..1384610) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251853.1 CDS ydiA NC_016863.1 1384766 1385599 R hypothetical protein complement(1384766..1385599) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251854.1 CDS pps NC_016863.1 1385936 1388314 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1385936..1388314 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251855.1 CDS ydiD NC_016863.1 1388356 1389996 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1388356..1389996) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251856.1 CDS ydiT NC_016863.1 1390086 1390379 R putative ferredoxin complement(1390086..1390379) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251857.1 CDS ydiS NC_016863.1 1390376 1391662 R similar to Escherichia coli flavoprotein; probably electron transport (AAC74769.1); hypothetical protein complement(1390376..1391662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251858.1 CDS ydiR NC_016863.1 1391719 1392654 R May play a role in a redox process; electron transfer flavoprotein subunit YdiR complement(1391719..1392654) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251859.1 CDS ydiQ NC_016863.1 1392676 1393440 R YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative electron transfer flavoprotein YdiQ complement(1392676..1393440) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251860.1 CDS ydiP NC_016863.1 1393903 1394793 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); AraC family; putative transcriptional regulator 1393903..1394793 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251861.1 CDS ydiO NC_016863.1 1394869 1396020 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative acyl-CoA dehydrogenase complement(1394869..1396020) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251862.1 CDS ydiF NC_016863.1 1396034 1397587 R similar to Escherichia coli putative enzyme (AAC74764.1); putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit complement(1396034..1397587) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251863.1 CDS aroD NC_016863.1 1397783 1398541 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1397783..1398541) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251864.1 CDS aroE NC_016863.1 1398586 1399452 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1398586..1399452) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251865.1 CDS ydiN NC_016863.1 1399519 1400754 R similar to Escherichia coli putative amino acid/amine transport protein (AAC74761.1); MFS family; putative transport protein complement(1399519..1400754) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251866.1 CDS ydiM NC_016863.1 1401118 1402329 R similar to Escherichia coli putative transport system permease protein (AAC74760.1); MFS family; putative transport protein complement(1401118..1402329) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251867.1 CDS ydiL NC_016863.1 1402470 1402829 R putative cytoplasmic protein complement(1402470..1402829) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251868.1 CDS ydiK NC_016863.1 1403288 1404406 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein complement(1403288..1404406) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251869.1 CDS ydiJ NC_016863.1 1404671 1407727 D similar to Escherichia coli putative oxidase (AAC74757.1); putative oxidase 1404671..1407727 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251870.1 CDS STMUK_1332 NC_016863.1 1407724 1408134 D possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1407724..1408134 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251871.1 CDS ydiH NC_016863.1 1408194 1408421 D putative cytoplasmic protein 1408194..1408421 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251872.1 CDS STMUK_1334 NC_016863.1 1408709 1410055 R similar to Escherichia coli part of a kinase (AAC74799.1); putative Na+-dicarboxylate symporter complement(1408709..1410055) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251873.1 CDS sufA NC_016863.1 1410482 1410850 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1410482..1410850 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251874.1 CDS sufB NC_016863.1 1410859 1412346 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1410859..1412346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251875.1 CDS sufC NC_016863.1 1412363 1413109 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1412363..1413109 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251876.1 CDS sufD NC_016863.1 1413084 1414355 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1413084..1414355 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251877.1 CDS sufS NC_016863.1 1414352 1415572 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1414352..1415572 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251878.1 CDS ynhA NC_016863.1 1415585 1416001 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1415585..1416001 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251879.1 CDS ynhG NC_016863.1 1416156 1417157 D contains putative LysM domain; hypothetical protein 1416156..1417157 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251880.1 CDS lppB NC_016863.1 1417224 1417463 R similar to Escherichia coli murein lipoprotein (AAC74747.1); putative methyl-accepting chemotaxis protein complement(1417224..1417463) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251881.1 CDS lpp NC_016863.1 1417546 1417782 R similar to Escherichia coli murein lipoprotein (AAC74747.1); murein lipoprotein complement(1417546..1417782) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251882.1 CDS pykF NC_016863.1 1418093 1419505 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1418093..1419505) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251883.1 CDS STMUK_1345 NC_016863.1 1419907 1421250 R amino acid permease YeeF-like protein (gi|1526981); putative amino acid permease complement(1419907..1421250) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251884.1 CDS STMUK_1346 NC_016863.1 1421272 1422165 R hydrolase or acyltransferase (gi|1526980); putative proline iminopeptidase complement(1421272..1422165) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251885.1 CDS STMUK_1347 NC_016863.1 1422224 1422961 R ORF 245 (gi|4456875); similar to STM3548; putative cytoplasmic protein complement(1422224..1422961) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251886.1 CDS STMUK_1348 NC_016863.1 1422973 1424199 R ORF 408 (gi|4456874); DeoR family; putative regulatory protein complement(1422973..1424199) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251887.1 CDS ttrA NC_016863.1 1424522 1427584 R tetrathionate reductase subunit A; TtrA (gi|4456873); tetrathionate reductase complex subunit A complement(1424522..1427584) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251888.1 CDS ttrC NC_016863.1 1427577 1428599 R tetrathionate reductase subunit C; TtrC (gi|4456872); tetrathionate reductase complex subunit C complement(1427577..1428599) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251889.1 CDS ttrB NC_016863.1 1428600 1429352 R tetrathionate reductase subunit B; TtrB (gi|4456871); tetrathionate reductase complex subunit B complement(1428600..1429352) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251890.1 CDS ttrS NC_016863.1 1429516 1431294 D tetrathionate reductase complex; TtrS (gi|4456870); two-component regulatory system; sensory histidine kinase 1429516..1431294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251891.1 CDS ttrR NC_016863.1 1431269 1431889 D tetrathionate reductase complex; TtrR (gi|4456869); two-component regulatory system; response regulator 1431269..1431889 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251892.1 CDS STMUK_1354 NC_016863.1 1431987 1432199 D hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1431987..1432199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251893.1 CDS STMUK_1355 NC_016863.1 1432295 1433254 R ORF 319 (gi|4456867); putative inner membrane protein complement(1432295..1433254) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251894.1 CDS STMUK_1356 NC_016863.1 1433427 1434155 R ORF 242 (gi|4456866); merR family; putative regulatory protein complement(1433427..1434155) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251895.1 CDS ssrB NC_016863.1 1434334 1434972 R SsrB (gi|2765824); type III secretion system regulator; similar to DegU/UvrY/BvgA; regulated by OmpR-EnvZ; controls regulation of SPI-2 expression; transcriptional activator complement(1434334..1434972) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251896.1 CDS ssrA NC_016863.1 1435003 1437765 R SpiR (gi|1498305); type III secretion system regulator; regulated by OmpR-EnvZ; sensor kinase complement(1435003..1437765) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251897.1 CDS ssaB NC_016863.1 1438166 1438567 D Salmonella typhimurium SpiC (gi|1498306); effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secreted effector protein 1438166..1438567 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251898.1 CDS ssaC NC_016863.1 1438569 1440062 D SpiA (gi|1498307); type III secretion system apparatus; outer membrane secretin precursor 1438569..1440062 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251899.1 CDS ssaD NC_016863.1 1440043 1441254 D SpiB (gi|1498308); type III secretion system; virulence protein 1440043..1441254 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251900.1 CDS ssaE NC_016863.1 1441262 1441504 D putative secretory apparatus component (gi|3377860); secretion system effector 1441262..1441504 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251901.1 CDS sseA NC_016863.1 1441768 1442094 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 1441768..1442094 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251902.1 CDS sseB NC_016863.1 1442101 1442691 D enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 1442101..1442691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251903.1 CDS sscA NC_016863.1 1442688 1443161 D putative secretion chaperone (gi|3377863); secretion system chaperone 1442688..1443161 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251904.1 CDS sseC NC_016863.1 1443164 1444618 D SseC (gi|3377864); translocation machinery component 1443164..1444618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251905.1 CDS sseD NC_016863.1 1444634 1445221 D SseD (gi|3776122); translocation machinery component 1444634..1445221 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251906.1 CDS sseE NC_016863.1 1445224 1445640 D SseE (gi|3377866); secreted effector protein 1445224..1445640 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251907.1 CDS sscB NC_016863.1 1445692 1446126 D SscB (gi|3377867); secretion system chaperone 1445692..1446126 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251908.1 CDS sseF NC_016863.1 1446142 1446924 D SseF (gi|3377868); secreted effector protein 1446142..1446924 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251909.1 CDS sseG NC_016863.1 1446921 1447610 D SseG (gi|3377858); secreted effector protein 1446921..1447610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251910.1 CDS ssaG NC_016863.1 1447704 1447919 D SsaH (gi|2460267); type III secretion system apparatus protein 1447704..1447919 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251911.1 CDS ssaH NC_016863.1 1447960 1448187 D SsaH (gi|3776128); type III secretion system apparatus protein 1447960..1448187 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251912.1 CDS ssaI NC_016863.1 1448199 1448447 D SsaI (gi|3776129); type III secretion system apparatus protein 1448199..1448447 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251913.1 CDS ssaJ NC_016863.1 1448444 1449193 D similar to yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SsaJ precursor (SW:SSAJ_SALTY); needle complex inner membrane lipoprotein 1448444..1449193 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251914.1 CDS STMUK_1376 NC_016863.1 1449211 1449759 D putative cytoplasmic protein 1449211..1449759 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251915.1 CDS ssaK NC_016863.1 1449756 1450430 D secretion system apparatus protein SsaK (SW:SSAK_SALTY); type III secretion system apparatus protein 1449756..1450430 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251916.1 CDS ssaL NC_016863.1 1450396 1451412 D secretion system apparatus protein SsaL (SW:SSAL_SALTY); type III secretion system apparatus protein 1450396..1451412 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251917.1 CDS ssaM NC_016863.1 1451470 1451838 D secretion system apparatus protein SsaM (SW:SSAM_SALTY); type III secretion system apparatus protein 1451470..1451838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251918.1 CDS ssaV NC_016863.1 1451823 1453868 D with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1451823..1453868 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251919.1 CDS ssaN NC_016863.1 1453858 1455159 D similar to YscN family of proteins; probable secretion system apparatus ATP synthase SsaN (SW:SSAN_SALTY); type III secretion system ATPase 1453858..1455159 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251920.1 CDS ssaO NC_016863.1 1455162 1455539 D secretion system apparatus protein SsaO (SW:SSAO_SALTY); type III secretion system apparatus protein 1455162..1455539 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251921.1 CDS ssaP NC_016863.1 1455520 1455894 D secretion system apparatus protein SsaP (SW:SSAP_SALTY); type III secretion system apparatus protein 1455520..1455894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251922.1 CDS ssaQ NC_016863.1 1455875 1456843 D secretion system apparatus protein SsaQ (SW:SSAQ_SALTY); type III secretion system apparatus protein; type III secretion system protein 1455875..1456843 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251923.1 CDS ssaR NC_016863.1 1456911 1457558 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1456911..1457558 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251924.1 CDS ssaS NC_016863.1 1457555 1457821 D secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia; type III secretion system apparatus protein 1457555..1457821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251925.1 CDS ssaT NC_016863.1 1457822 1458601 D secretion system apparatus protein SsaT (SW:SSAT_SALTY); similar to YscT of the secretion system of Yersinia; type III secretion system apparatus protein 1457822..1458601 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251926.1 CDS ssaU NC_016863.1 1458598 1459656 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1458598..1459656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251927.1 CDS ydhE NC_016863.1 1460129 1461502 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1460129..1461502) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251928.1 CDS ribE NC_016863.1 1461719 1462360 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1461719..1462360 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251929.1 CDS cfa NC_016863.1 1462402 1463550 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1462402..1463550) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251930.1 CDS ydhC NC_016863.1 1463840 1465045 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1463840..1465045) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251931.1 CDS ydhB NC_016863.1 1465158 1466090 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74731.1); LysR family; putative DNA-binding transcriptional regulator 1465158..1466090 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251932.1 CDS purR NC_016863.1 1466087 1467112 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(1466087..1467112) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251933.1 CDS sodB NC_016863.1 1467580 1468161 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1467580..1468161) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251934.1 CDS ydhO NC_016863.1 1468288 1469142 R similar to Escherichia coli putative lipoprotein (AAC74727.1); putative cell wall-associated hydrolase complement(1468288..1469142) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251935.1 CDS ydhD NC_016863.1 1469444 1469791 D hypothetical protein 1469444..1469791 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251936.1 CDS rnt NC_016863.1 1469869 1470516 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1469869..1470516) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251937.1 CDS gloA NC_016863.1 1470617 1471024 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I complement(1470617..1471024) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251938.1 CDS nemA NC_016863.1 1471093 1472190 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1471093..1472190) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251939.1 CDS ydhM NC_016863.1 1472249 1472848 R TetR/AcrR family; putative transcriptional repressor complement(1472249..1472848) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251940.1 CDS ydhL NC_016863.1 1472951 1473190 D putative oxidoreductase 1472951..1473190 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251941.1 CDS ydhF NC_016863.1 1473241 1474137 D putative aldo/keto reductase 1473241..1474137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251942.1 CDS sodC NC_016863.1 1474217 1474738 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1474217..1474738 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251943.1 CDS STMUK_1407 NC_016863.1 1474714 1476753 R putative inner membrane protein complement(1474714..1476753) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251944.1 CDS ydhJ NC_016863.1 1476753 1477649 R similar to Escherichia coli putative membrane protein (AAC74716.1); putative multidrug resistance efflux pump complement(1476753..1477649) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251945.1 CDS ydhI NC_016863.1 1477616 1477852 R putative inner membrane protein complement(1477616..1477852) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251946.1 CDS slyA NC_016863.1 1478047 1478487 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1478047..1478487 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251947.1 CDS slyB NC_016863.1 1478535 1479002 R outer membrane lipoprotein SlyB precursor (SW:SLYB_SALTY); putative outer membrane lipoprotein complement(1478535..1479002) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251948.1 CDS ydhH NC_016863.1 1479274 1480395 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1479274..1480395 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251949.1 CDS mliC NC_016863.1 1480483 1480812 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1480483..1480812 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251950.1 CDS pdxH NC_016863.1 1480871 1481527 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1480871..1481527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251951.1 CDS tyrS NC_016863.1 1481654 1482928 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1481654..1482928 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251952.1 CDS pdxY NC_016863.1 1482988 1483848 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1482988..1483848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251953.1 CDS gst NC_016863.1 1483907 1484512 R similar to Escherichia coli glutathionine S-transferase (AAC74707.1); glutathionine S-transferase complement(1483907..1484512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251954.1 CDS ydgR NC_016863.1 1484617 1486122 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; putative tripeptide transporter permease complement(1484617..1486122) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251955.1 CDS nth NC_016863.1 1486724 1487359 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III complement(1486724..1487359) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251956.1 CDS ydgQ NC_016863.1 1487359 1488051 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1487359..1488051) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251957.1 CDS ydgP NC_016863.1 1488054 1488674 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(1488054..1488674) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251958.1 CDS rnfD NC_016863.1 1488678 1489736 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of t; electron transport complex protein RnfD complement(1488678..1489736) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251959.1 CDS STMUK_1423 NC_016863.1 1489737 1491944 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(1489737..1491944) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251960.1 CDS ydgM NC_016863.1 1491937 1492515 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(1491937..1492515) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251961.1 CDS STMUK_1425 NC_016863.1 1492515 1493096 R inner membrane protein; Na(+)-translocating NADH-quinone reductase subunit E complement(1492515..1493096) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251962.1 CDS ydgK NC_016863.1 1493173 1493613 R putative inner membrane protein complement(1493173..1493613) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251963.1 CDS ydgT NC_016863.1 1493702 1493917 R YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate; oriC-binding nucleoid-associated protein complement(1493702..1493917) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251964.1 CDS ydgJ NC_016863.1 1494473 1495588 D putative oxidoreductase 1494473..1495588 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251965.1 CDS add NC_016863.1 1495663 1496664 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1495663..1496664) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251966.1 CDS ydgA NC_016863.1 1497368 1498876 R hypothetical protein complement(1497368..1498876) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251967.1 CDS manA NC_016863.1 1498979 1500154 R mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase complement(1498979..1500154) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251968.1 CDS fumA NC_016863.1 1500354 1502000 D fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); fumarase A 1500354..1502000 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251969.1 CDS fumC NC_016863.1 1502168 1503571 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1502168..1503571 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251970.1 CDS tus NC_016863.1 1503568 1504497 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1503568..1504497) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251971.1 CDS rstB NC_016863.1 1504573 1505874 R similar to Escherichia coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); in two-component regulatory system with RstA; sensor protein RstB complement(1504573..1505874) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251972.1 CDS STMUK_1436 NC_016863.1 1505985 1507691 R hypothetical protein complement(1505985..1507691) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251973.1 CDS ompN NC_016863.1 1507844 1508977 R similar to Escherichia coli putative outer membrane protein (AAC74459.1); non-specific porin; outer membrane protein N complement(1507844..1508977) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251974.1 CDS rstA NC_016863.1 1509457 1510188 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(1509457..1510188) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251975.1 CDS ydgC NC_016863.1 1510315 1510650 D putative inner membrane protein 1510315..1510650 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251976.1 CDS ydgI NC_016863.1 1510712 1512094 R similar to Escherichia coli putative arginine/ornithine antiporter (AAC74677.1); putative amino acid transporter complement(1510712..1512094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251977.1 CDS ydgH NC_016863.1 1512393 1513337 R hypothetical protein complement(1512393..1513337) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251978.1 CDS pntA NC_016863.1 1513864 1515393 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons fro; NAD(P) transhydrogenase subunit alpha 1513864..1515393 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251979.1 CDS pntB NC_016863.1 1515404 1516792 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-ste; pyridine nucleotide transhydrogenase 1515404..1516792 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251980.1 CDS ydgG NC_016863.1 1516967 1518001 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; putative transport protein complement(1516967..1518001) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251981.1 CDS ydgF NC_016863.1 1518419 1518781 D with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1518419..1518781 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251982.1 CDS ydgE NC_016863.1 1518768 1519097 D with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1518768..1519097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251983.1 CDS STMUK_1447 NC_016863.1 1519137 1519958 R putative protease complement(1519137..1519958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251984.1 CDS STMUK_1448 NC_016863.1 1520227 1520511 R required for growth and survival under moderately acid conditions; acid shock protein complement(1520227..1520511) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251985.1 CDS ynfM NC_016863.1 1520870 1522123 R similar to Escherichia coli putative transport protein (AAC74668.1); MFS family; putative transport protein complement(1520870..1522123) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251986.1 CDS ynfL NC_016863.1 1522243 1523142 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 1522243..1523142 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251987.1 CDS mlc NC_016863.1 1523270 1524490 D similar to Escherichia coli putative NagC-like transcriptional regulator (AAC74666.1); repressor of ptsG and ptsHI; global repressor of carbohydrate metabolism pts operon; NagC/XylR family; pts operon transcriptional repressor 1523270..1524490 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251988.1 CDS bioD NC_016863.1 1524616 1525311 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 1524616..1525311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251989.1 CDS STMUK_1453 NC_016863.1 1525267 1526556 R similar to Escherichia coli putative chloride channel (AAC74664.1); putative voltage-gated ClC-type chloride channel ClcB complement(1525267..1526556) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251990.1 CDS STMUK_1454 NC_016863.1 1526692 1527840 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); ABC-type ATPase component; proline/glycine betaine transport system protein complement(1526692..1527840) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251991.1 CDS STMUK_1455 NC_016863.1 1527840 1528487 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); binding-protein-dependent; putative ABC transporter permease complement(1527840..1528487) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251992.1 CDS STMUK_1456 NC_016863.1 1528497 1529399 R similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC transporter periplasmic component complement(1528497..1529399) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251993.1 CDS STMUK_1457 NC_016863.1 1529428 1530138 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); ABC-type transport systems; putative transport system permease component complement(1529428..1530138) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251994.1 CDS ynfI NC_016863.1 1530443 1531057 R binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD complement(1530443..1531057) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251995.1 CDS STMUK_1459 NC_016863.1 1531100 1531957 R similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative dimethylsulfoxide reductase complement(1531100..1531957) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251996.1 CDS STMUK_1460 NC_016863.1 1531959 1532576 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative dimethyl sulfoxide reductase complement(1531959..1532576) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251997.1 CDS STMUK_1461 NC_016863.1 1532587 1535022 R similar to Escherichia coli putative oxidoreductase; major subunit (AAC74660.1); putative dimethyl sulfoxide reductase complement(1532587..1535022) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251998.1 CDS STMUK_1462 NC_016863.1 1535121 1537562 R similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative dimethyl sulfoxide reductase chain A1 complement(1535121..1537562) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005251999.1 CDS ynfD NC_016863.1 1537716 1538024 R putative outer membrane protein complement(1537716..1538024) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252000.1 CDS ynfC NC_016863.1 1538119 1538838 D hypothetical protein 1538119..1538838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252001.1 CDS speG NC_016863.1 1538879 1539439 R similar to Escherichia coli spermidine N1-acetyltransferase (AAC74656.1); spermidine N1-acetyltransferase complement(1538879..1539439) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252002.1 CDS ynfB NC_016863.1 1539475 1539816 R hypothetical protein complement(1539475..1539816) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252003.1 CDS ynfA NC_016863.1 1539969 1540295 D hypothetical protein 1539969..1540295 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252004.1 CDS rspA NC_016863.1 1540417 1541631 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 1540417..1541631 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252005.1 CDS rspB NC_016863.1 1541642 1542661 D similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative dehydrogenase 1541642..1542661 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252006.1 CDS STMUK_1470 NC_016863.1 1542715 1543692 D similar to E. coli putative transport protein(AAC74616.1); Blastp hit to AAC74616.1 (427 aa); putative transport protein 1542715..1543692 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252007.1 CDS STMUK_1471 NC_016863.1 1543696 1544094 D similar to inner membrane metabolite transport protein YdfJ (Pid: YP_002114523.1).; hypothetical protein 1543696..1544094 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252008.1 CDS ydfI NC_016863.1 1544238 1545704 D similar to Escherichia coli putative oxidoreductase (AAC74615.1); putative mannitol dehydrogenase 1544238..1545704 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252009.1 CDS ydfZ NC_016863.1 1545771 1545974 R putative cytoplasmic protein complement(1545771..1545974) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252010.1 CDS ydfH NC_016863.1 1546155 1546841 R GntR family; putative regulatory protein complement(1546155..1546841) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252011.1 CDS ydfG NC_016863.1 1546971 1547717 R NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase complement(1546971..1547717) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252012.1 CDS dcp NC_016863.1 1547856 1549898 D peptidyl-dipeptidase DCP (SW:DCP_SALTY); dipeptidyl carboxypeptidase II 1547856..1549898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252013.1 CDS STMUK_1477 NC_016863.1 1550243 1550425 D putative cytoplasmic protein 1550243..1550425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252014.1 CDS ydeJ NC_016863.1 1550545 1551072 R competence damage-inducible protein A complement(1550545..1551072) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252015.1 CDS ydeI NC_016863.1 1551499 1551891 D hypothetical protein 1551499..1551891 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252016.1 CDS STMUK_1480 NC_016863.1 1552239 1552334 R similar to hypothetical protein SeHA_C1687 (Pid: YP_002045555.1).; hypothetical protein complement(1552239..1552334) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252017.1 CDS ydeE NC_016863.1 1552582 1553769 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; putative MFS-type transporter YdeE complement(1552582..1553769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252018.1 CDS ydeD NC_016863.1 1553997 1554899 D probable cysteine metabolite efflux pump (SW:EAMA_SALTY); integral membrane protein; O-acetylserine/cysteine export protein 1553997..1554899 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252019.1 CDS marB NC_016863.1 1555018 1555233 R multiple antibiotic resistance protein MarB (SW:MARB_SALTY); hypothetical protein complement(1555018..1555233) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252020.1 CDS marA NC_016863.1 1555262 1555696 R transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA complement(1555262..1555696) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252021.1 CDS marR NC_016863.1 1555665 1556099 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1555665..1556099) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252022.1 CDS marC NC_016863.1 1556358 1557023 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1556358..1557023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252023.1 CDS ydeA NC_016863.1 1557070 1558260 R similar to Escherichia coli putative resistance/regulatory protein (AAC74601.1); contributes to control of arabinose regulon; MFS family; sugar efflux transporter complement(1557070..1558260) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252024.1 CDS yneJ NC_016863.1 1558376 1559248 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74599.1); LysR family; putative transcriptional regulator complement(1558376..1559248) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252025.1 CDS yneI NC_016863.1 1559351 1560739 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; putative succinate-semialdehyde dehydrogenase 1559351..1560739 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252026.1 CDS yneH NC_016863.1 1560812 1561738 D catalyzes the formation of glutamate from glutamine; glutaminase 1560812..1561738 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252027.1 CDS yneG NC_016863.1 1561738 1562097 D putative cytoplasmic protein 1561738..1562097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252028.1 CDS STMUK_1492 NC_016863.1 1562321 1563268 D putative inner membrane protein 1562321..1563268 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252029.1 CDS STMUK_1493 NC_016863.1 1563324 1563866 R putative outer membrane protein complement(1563324..1563866) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252030.1 CDS STMUK_1494 NC_016863.1 1563715 1564041 D putative inner membrane protein 1563715..1564041 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252031.1 CDS STMUK_1495 NC_016863.1 1564583 1565701 D similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative outer membrane protein 1564583..1565701 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252032.1 CDS STMUK_1496 NC_016863.1 1565842 1566183 R similar to Escherichia coli may modulate levels of hydrogenease-2 (AAC76027.1); putative hydrogenase complement(1565842..1566183) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252033.1 CDS STMUK_1497 NC_016863.1 1566196 1567083 R dehydrogenase complement(1566196..1567083) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252034.1 CDS STMUK_1498 NC_016863.1 1567071 1568132 R similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase complement(1567071..1568132) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252035.1 CDS STMUK_1499 NC_016863.1 1568150 1568560 R similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74061.1); putative hydrogenase complement(1568150..1568560) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252036.1 CDS STMUK_1500 NC_016863.1 1568557 1568856 R putative hydrogenase protein complement(1568557..1568856) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252037.1 CDS STMUK_1501 NC_016863.1 1568856 1569464 R similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74060.1); putative hydrogenase maturation protease complement(1568856..1569464) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252038.1 CDS STMUK_1502 NC_016863.1 1569470 1570213 R similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); putative Ni/Fe hydrogenase 1 b-type cytochrome subunit complement(1569470..1570213) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252039.1 CDS STMUK_1503 NC_016863.1 1570164 1571966 R similar to Escherichia coli hydrogenase-1 large subunit (AAC74058.1); putative hydrogenase-1 large subunit complement(1570164..1571966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252040.1 CDS STMUK_1504 NC_016863.1 1571969 1573072 R similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); putative hydrogenase-1 small subunit complement(1571969..1573072) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252041.1 CDS STMUK_1505 NC_016863.1 1573200 1573352 R similar to hypothetical protein SPC_2188 (Pid: YP_002637753.1).; hypothetical protein complement(1573200..1573352) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252042.1 CDS STMUK_1506 NC_016863.1 1573501 1574592 D putative hydrolase 1573501..1574592 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252043.1 CDS STMUK_1507 NC_016863.1 1574638 1575429 D similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 1574638..1575429 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252044.1 CDS STMUK_1508 NC_016863.1 1575488 1576513 R similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative zinc-binding dehydrogenase complement(1575488..1576513) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252045.1 CDS STMUK_1509 NC_016863.1 1576488 1577774 R similar to Escherichia coli putative transport protein (AAC76161.1); putative transport protein complement(1576488..1577774) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252046.1 CDS pqaA NC_016863.1 1577951 1579507 R PhoPQ-regulated protein complement(1577951..1579507) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252047.1 CDS STMUK_1511 NC_016863.1 1579577 1580818 R similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative multidrug efflux protein complement(1579577..1580818) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252048.1 CDS STMUK_1512 NC_016863.1 1580808 1582316 R similar to Escherichia coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); hypothetical protein complement(1580808..1582316) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252049.1 CDS STMUK_1513 NC_016863.1 1582361 1582849 D marR-family; putative transcriptional regulator 1582361..1582849 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252050.1 CDS STMUK_1514 NC_016863.1 1583042 1584121 D similar to Escherichia coli synthesis of queuine in tRNA; probably S-adenosylmethionine/tRNA ribosyltransferase-isomerase (AAC73508.1); putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase 1583042..1584121 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252051.1 CDS STMUK_1515 NC_016863.1 1584173 1584562 R putative translation initiation inhibitor complement(1584173..1584562) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252052.1 CDS STMUK_1516 NC_016863.1 1584733 1585017 R putative cytoplasmic protein complement(1584733..1585017) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252053.1 CDS STMUK_1517 NC_016863.1 1585007 1585255 R putative cytoplasmic protein complement(1585007..1585255) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252054.1 CDS STMUK_1518 NC_016863.1 1585612 1585944 D similar to hypothetical protein STM1551.1n (Pid: NP_945161.1).; hypothetical protein 1585612..1585944 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252055.1 CDS STMUK_1519 NC_016863.1 1586087 1586995 D putative cytoplasmic protein 1586087..1586995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252056.1 CDS STMUK_1520 NC_016863.1 1587048 1587440 D hypothetical protein 1587048..1587440 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252057.1 CDS STMUK_1521 NC_016863.1 1587577 1587705 D hypothetical protein 1587577..1587705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252058.1 CDS STMUK_1522 NC_016863.1 1588095 1588292 R similar to hypothetical protein SPC_2184 (Pid: YP_002637750.1).; hypothetical protein complement(1588095..1588292) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252059.1 CDS STMUK_1523 NC_016863.1 1588574 1590040 R putative coiled-coil protein complement(1588574..1590040) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252060.1 CDS STMUK_1524 NC_016863.1 1590299 1591306 D similar to Escherichia coli repressor of galETK operon (AAC75876.1); putative transcriptional regulator 1590299..1591306 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252061.1 CDS STMUK_1525 NC_016863.1 1591450 1592901 D similar to Escherichia coli transport of dicarboxylates (AAC73722.1); putative Na+/H+ antiporter 1591450..1592901 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252062.1 CDS STMUK_1526 NC_016863.1 1592914 1594116 D similar to Escherichia coli enzyme that may degrade or block biosynthesis of endogenous mal inducer; probably aminotrasferase (AAC74694.1); putative aminotransferase 1592914..1594116 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252063.1 CDS STMUK_1527 NC_016863.1 1594229 1596304 R similar to Escherichia coli part of glycogen operon; glycosyl hydrolase; debranching enzyme (AAC76456.1); putative glycosyl hydrolase complement(1594229..1596304) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252064.1 CDS STMUK_1528 NC_016863.1 1596361 1598889 R similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); putative glycosyl hydrolase complement(1596361..1598889) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252065.1 CDS STMUK_1529 NC_016863.1 1598886 1600670 R similar to Escherichia coli 1,4-alpha-glucan branching enzyme (AAC76457.1); putative alpha amylase complement(1598886..1600670) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252066.1 CDS STMUK_1530 NC_016863.1 1600799 1601584 R outer membrane or secreted; putative lipoprotein complement(1600799..1601584) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252067.1 CDS hdeB NC_016863.1 1601727 1602056 R acid-resistance protein complement(1601727..1602056) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252068.1 CDS osmC NC_016863.1 1602406 1602837 R similar to Escherichia coli osmotically inducible protein (AAC74555.1); resistance protein; osmotically inducible; putative envelope protein complement(1602406..1602837) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252069.1 CDS yddX NC_016863.1 1603350 1603565 D biofilm-dependent modulation protein 1603350..1603565 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252070.1 CDS sra NC_016863.1 1603660 1603803 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1603660..1603803 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252071.1 CDS sfcA NC_016863.1 1603980 1605677 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1603980..1605677 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252072.1 CDS adhA NC_016863.1 1605963 1606973 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1605963..1606973 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252073.1 CDS fdnI NC_016863.1 1607064 1607720 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(1607064..1607720) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252074.1 CDS fdnH NC_016863.1 1607713 1608597 R similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible; iron-sulfur beta subunit (AAD13439.1); Fe-S beta subunit; formate dehydrogenase-N beta subunit complement(1607713..1608597) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252075.1 CDS yddG NC_016863.1 1611993 1612817 D hypothetical protein 1611993..1612817 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252076.1 CDS nmpC NC_016863.1 1613342 1614430 D outer membrane porin protein PmpD (SW:OMPD_SALTY); putative outer membrane porin 1613342..1614430 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252077.1 CDS STMUK_1542 NC_016863.1 1614574 1614954 D putative cytoplasmic protein 1614574..1614954 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252078.1 CDS smvA NC_016863.1 1614979 1616466 R methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance complement(1614979..1616466) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252079.1 CDS STMUK_1544 NC_016863.1 1616583 1617161 D TetR family; putative transcriptional regulator 1616583..1617161 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252080.1 CDS narU NC_016863.1 1617376 1618764 D nitrite extrusion protein 2; nitrite facilitator 2 (SW:NARU_SALTY); MFS superfamily; nitrate extrusion protein 1617376..1618764 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252081.1 CDS narZ NC_016863.1 1618856 1622596 D similar to Escherichia coli cryptic nitrate reductase 2; alpha subunit (AAC74550.1); nitrate reductase 2 alpha subunit 1618856..1622596 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252082.1 CDS narY NC_016863.1 1622593 1624137 D similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1); nitrate reductase 2 beta subunit 1622593..1624137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252083.1 CDS narW NC_016863.1 1624137 1624832 D similar to Escherichia coli cryptic nitrate reductase 2; delta subunit; assembly function (AAC74548.1); nitrate reductase 2 delta subunit 1624137..1624832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252084.1 CDS narV NC_016863.1 1624829 1625509 D similar to Escherichia coli cryptic nitrate reductase 2; gamma subunit (AAC74547.1); nitrate reductase 2 gamma subunit 1624829..1625509 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252085.1 CDS yddE NC_016863.1 1625615 1626508 D hypothetical protein in nhoA 5'region (SW:YDDE_SALTY); hypothetical protein 1625615..1626508 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252086.1 CDS nhoA NC_016863.1 1626544 1627389 R N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); putative arylamine N-acetyltransferase complement(1626544..1627389) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252087.1 CDS STMUK_1552 NC_016863.1 1627673 1628305 R putative cytoplasmic protein complement(1627673..1628305) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252088.1 CDS ansP NC_016863.1 1628818 1630311 D L-asparagine permease (L-asparagine transport protein) (SW:ANSP_SALTY); APC family; L-asparagine transport protein 1628818..1630311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252089.1 CDS STMUK_1554 NC_016863.1 1630388 1630609 R putative outer membrane lipoprotein complement(1630388..1630609) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252090.1 CDS STMUK_1555 NC_016863.1 1630754 1631815 R similar to Escherichia coli putative receptor (AAC74534.1); hypothetical protein complement(1630754..1631815) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252091.1 CDS yncD NC_016863.1 1632079 1634199 D similar to Escherichia coli putative outer membrane receptor for iron transport (AAC74533.1); putative outer membrane receptor 1632079..1634199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252092.1 CDS yncC NC_016863.1 1634266 1634931 R GntR family; putative DNA-binding transcriptional regulator complement(1634266..1634931) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252093.1 CDS yncB NC_016863.1 1635265 1636335 R similar to Escherichia coli putative oxidoreductase (AAC74531.1); putative NADP-dependent oxidoreductase complement(1635265..1636335) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252094.1 CDS yncA NC_016863.1 1636514 1637029 D similar to Escherichia coli putative resistance protein (AAC74530.1); putative acyltransferase 1636514..1637029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252095.1 CDS ydcZ NC_016863.1 1637029 1637478 D putative inner membrane protein 1637029..1637478 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252096.1 CDS ydcY NC_016863.1 1637483 1637716 R putative cytoplasmic protein complement(1637483..1637716) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252097.1 CDS srfA NC_016863.1 1637940 1639259 D SrfA (gi|8347258); ssrAB-activated gene; putative virulence protein 1637940..1639259 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252098.1 CDS srfB NC_016863.1 1639264 1642245 D SrfB (gi|8347259); ssrAB-activated gene; putative virulence protein 1639264..1642245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252099.1 CDS srfC NC_016863.1 1642242 1644386 D SrfC (gi|8347260); contains predicted coiled-coil structure; ssrAB-activated gene; putative virulence protein 1642242..1644386 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252100.1 CDS ydcX NC_016863.1 1644431 1644694 R putative inner membrane protein complement(1644431..1644694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252101.1 CDS ydcW NC_016863.1 1645003 1646448 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1645003..1646448) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252102.1 CDS ydcR NC_016863.1 1646563 1647987 R similar to Escherichia coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); GntR family; putative regulatory protein complement(1646563..1647987) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252103.1 CDS pdgL NC_016863.1 1648123 1648893 R D-alanyl-D-alanine dipeptidase for peptidoglycan digestion (gi|4585342); periplasmic dipeptidase precursor complement(1648123..1648893) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252104.1 CDS STMUK_1569 NC_016863.1 1649152 1649382 R putative inner membrane protein complement(1649152..1649382) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252105.1 CDS ugtL NC_016863.1 1649415 1649813 R putative membrane protein UgtL (gi|4585341); similar to chitinase from Schizosaccharomyces; hypothetical protein complement(1649415..1649813) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252106.1 CDS sifB NC_016863.1 1650350 1651300 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1650350..1651300 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252107.1 CDS yncJ NC_016863.1 1651574 1651804 D hypothetical protein 1651574..1651804 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252108.1 CDS ydcP NC_016863.1 1651805 1653769 R similar to Escherichia coli putative collagenase (AAC74517.1); putative collagenase complement(1651805..1653769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252109.1 CDS ydcN NC_016863.1 1653848 1654384 R oxidoreductase; putative repressor complement(1653848..1654384) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252110.1 CDS STMUK_1575 NC_016863.1 1654475 1655653 D similar to Escherichia coli putative membrane transport protein (AAC74515.1); putative benzoate membrane transport protein 1654475..1655653 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252111.1 CDS STMUK_1576 NC_016863.1 1655707 1656375 R putative outer membrane lipoprotein complement(1655707..1656375) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252112.1 CDS tehB NC_016863.1 1656531 1657127 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1656531..1657127) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252113.1 CDS tehA NC_016863.1 1657114 1658127 R similar to Escherichia coli tellurite resistance (AAC74511.1); TDT family; potassium-tellurite ethidium and proflavin transporter complement(1657114..1658127) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252114.1 CDS ydcK NC_016863.1 1658234 1659214 D involved in lipopolysaccharide biosynthesis; putative nucleoside-diphosphate-sugar pyrophosphorylase 1658234..1659214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252115.1 CDS rimL NC_016863.1 1659211 1659750 R similar to Escherichia coli acetylase; acetylates N-terminal serine of 50S ribosomal subunit protein L7/L12 (AAC74509.1); ribosomal-protein-L7/L12-serine acetyltransferase complement(1659211..1659750) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252116.1 CDS STMUK_1581 NC_016863.1 1659967 1661085 D similar to Escherichia coli putative lyase/synthase (AAC77261.1); putative cellulase protein 1659967..1661085 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252117.1 CDS STMUK_1582 NC_016863.1 1661082 1661363 D similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); putative PTS system enzymeIIB component 1661082..1661363 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252118.1 CDS STMUK_1583 NC_016863.1 1661374 1662687 D similar to Escherichia coli putative PTS system enzyme IIC component (AAC77260.1); putative PTS system enzyme IIC component 1661374..1662687 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252119.1 CDS STMUK_1584 NC_016863.1 1662701 1663507 D similar to Escherichia coli putative nucleoside triphosphatase (AAC77259.1); putative nucleoside triphosphatase 1662701..1663507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252120.1 CDS STMUK_1585 NC_016863.1 1663639 1664076 D similar to Escherichia coli putative PTS system enzyme II A component (AAC77258.1); putative sugar-specific PTS enzyme II 1663639..1664076 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252121.1 CDS STMUK_1586 NC_016863.1 1664088 1664720 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 1664088..1664720 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252122.1 CDS STMUK_1587 NC_016863.1 1664736 1665527 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC77256.1); DeoR family; putative transcriptional repressor of sgc operon 1664736..1665527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252123.1 CDS STMUK_1588 NC_016863.1 1665527 1665964 D cryptic aminoglycoside resistance protein 1665527..1665964 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252124.1 CDS STMUK_1589 NC_016863.1 1666011 1667213 R similar to Escherichia coli L-lactate dehydrogenase (AAC76629.1); putative oxidase complement(1666011..1667213) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252125.1 CDS STMUK_1590 NC_016863.1 1667225 1667800 R hypothetical protein complement(1667225..1667800) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252126.1 CDS opgD NC_016863.1 1667996 1669651 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1667996..1669651) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252127.1 CDS STMUK_1592 NC_016863.1 1669871 1671379 R putative carboxylesterase complement(1669871..1671379) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252128.1 CDS STMUK_1593 NC_016863.1 1671428 1672771 R putative cytoplasmic protein complement(1671428..1672771) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252129.1 CDS ydcI NC_016863.1 1673064 1673987 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 1673064..1673987 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252130.1 CDS trg NC_016863.1 1674048 1675673 R similar to Escherichia coli methyl-accepting chemotaxis protein III; ribose and galactose sensor receptor (AAC74503.1); methyl-accepting chemotaxis protein III complement(1674048..1675673) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252131.1 CDS STMUK_1596 NC_016863.1 1675842 1676960 R similar to Escherichia coli alcohol dehydrogenase class III; formaldehyde dehydrogenase; glutathione-dependent (AAC73459.1); alcohol dehydrogenase class III complement(1675842..1676960) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252132.1 CDS STMUK_1597 NC_016863.1 1676992 1677267 R similar to Escherichia coli putative alpha helix chain (AAC73460.1); putative cytoplasmic protein complement(1676992..1677267) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252133.1 CDS STMUK_1598 NC_016863.1 1677790 1678191 D putative dipicolinate reductase 1677790..1678191 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252134.1 CDS STMUK_1599 NC_016863.1 1678320 1679036 R putative inner membrane protein complement(1678320..1679036) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252135.1 CDS sseJ NC_016863.1 1679462 1680688 D secreted effector J (gi|9931614); Salmonella translocated effector; regulated by SPI-2; secreted effector protein 1679462..1680688 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252136.1 CDS STMUK_1601 NC_016863.1 1680809 1681153 R putative inner membrane protein complement(1680809..1681153) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252137.1 CDS STMUK_1602 NC_016863.1 1682060 1682821 D similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); putative periplasmic binding protein 1682060..1682821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252138.1 CDS STMUK_1603 NC_016863.1 1682828 1683475 D similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); amino acid; putative ABC transporter permease 1682828..1683475 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252139.1 CDS STMUK_1604 NC_016863.1 1683500 1684231 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC76303.1); putative ABC-type polar amino acid transport system ATPase component 1683500..1684231 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252140.1 CDS STMUK_1605 NC_016863.1 1684228 1684908 D similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type transport system membrane component 1684228..1684908 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252141.1 CDS STMUK_1606 NC_016863.1 1685045 1686595 D putative inner membrane protein 1685045..1686595 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252142.1 CDS STMUK_1607 NC_016863.1 1687284 1687721 D putative SAM-dependent methyltransferase 1687284..1687721 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252143.1 CDS cybB NC_016863.1 1687992 1688522 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1687992..1688522) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252144.1 CDS ydcF NC_016863.1 1688639 1689439 R putative inner membrane protein complement(1688639..1689439) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252145.1 CDS hrpA NC_016863.1 1689503 1693405 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1689503..1693405) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252146.1 CDS acpD NC_016863.1 1693606 1694211 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1693606..1694211 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252147.1 CDS STMUK_1612 NC_016863.1 1694208 1694657 R putative inner membrane protein complement(1694208..1694657) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252148.1 CDS ydbL NC_016863.1 1694800 1695123 R hypothetical protein complement(1694800..1695123) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252149.1 CDS ynbE NC_016863.1 1695131 1695322 R putative outer membrane lipoprotein complement(1695131..1695322) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252150.1 CDS ydbH NC_016863.1 1695322 1697958 R hypothetical protein complement(1695322..1697958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252151.1 CDS ldhA NC_016863.1 1698198 1699187 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthe; D-lactate dehydrogenase 1698198..1699187 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252152.1 CDS hslJ NC_016863.1 1699298 1699708 D similar to Escherichia coli heat shock protein hslJ (AAC74461.1); heat-inducible protein 1699298..1699708 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252153.1 CDS STMUK_1618 NC_016863.1 1699752 1699907 R putative cytoplasmic protein complement(1699752..1699907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252154.1 CDS STMUK_1619 NC_016863.1 1699934 1700233 D hypothetical protein 1699934..1700233 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252155.1 CDS nifJ NC_016863.1 1700294 1703818 D similar to Escherichia coli putative oxidoreductase; Fe-S subunit (AAC74460.1); putative pyruvate-flavodoxin oxidoreductase 1700294..1703818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252156.1 CDS ynaF NC_016863.1 1704300 1704734 D similar to Escherichia coli putative filament protein (AAC74458.1); putative universal stress protein 1704300..1704734 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252157.1 CDS STMUK_1622 NC_016863.1 1704784 1705122 R similar to Escherichia coli methylviologen resistance (AAC73644.1); putative membrane transporter of cations complement(1704784..1705122) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252158.1 CDS ydaO NC_016863.1 1705478 1706413 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1705478..1706413 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252159.1 CDS dbpA NC_016863.1 1706457 1707830 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(1706457..1707830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252160.1 CDS zntB NC_016863.1 1708317 1709300 R zinc transporter complement(1708317..1709300) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252161.1 CDS STMUK_1626 NC_016863.1 1709446 1710600 R similar to Escherichia coli methyl-accepting chemotaxis protein I serine sensor receptor (AAC77311.1); similar to C-terminus of many MCPs; putative methyl-accepting chemotaxis protein complement(1709446..1710600) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252162.1 CDS ydaL NC_016863.1 1711011 1711574 R contains putative Smr domain; hypothetical protein complement(1711011..1711574) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252163.1 CDS ogt NC_016863.1 1711832 1712347 D methylated-DNA protein-cysteine methyltransferase (SW:OGT_SALTY); O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1711832..1712347 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252164.1 CDS fnr NC_016863.1 1712501 1713295 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1712501..1713295 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252165.1 CDS ydaA NC_016863.1 1713446 1714393 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1713446..1714393 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252166.1 CDS ynaJ NC_016863.1 1714448 1714702 R putative inner membrane protein complement(1714448..1714702) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252167.1 CDS ynaI NC_016863.1 1714941 1715972 D hypothetical protein 1714941..1715972 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252168.1 CDS STMUK_1633 NC_016863.1 1716058 1716660 R putative transcriptional regulator complement(1716058..1716660) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252169.1 CDS STMUK_1634 NC_016863.1 1716704 1717390 D putative cytoplasmic protein 1716704..1717390 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252170.1 CDS STMUK_1635 NC_016863.1 1717862 1718419 R similar to Escherichia coli thiol peroxidase (AAC74406.1); putative thiol peroxidase complement(1717862..1718419) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252171.1 CDS STMUK_1636 NC_016863.1 1718518 1719348 R hypothetical protein complement(1718518..1719348) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252172.1 CDS STMUK_1637 NC_016863.1 1719369 1721351 R similar to Escherichia coli putative factor (AAC74304.1); similar to invasin C of Yersinia; intimin; invasin-like protein complement(1719369..1721351) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252173.1 CDS STMUK_1638 NC_016863.1 1721426 1722271 R putative lipoprotein complement(1721426..1722271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252174.1 CDS STMUK_1640 NC_016863.1 1723814 1724923 D putative cytoplasmic protein 1723814..1724923 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252175.1 CDS STMUK_1641 NC_016863.1 1725137 1725391 R putative outer membrane lipoprotein complement(1725137..1725391) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252176.1 CDS STMUK_1642 NC_016863.1 1725502 1726092 R AraC family; helix-turn-helix; putative regulatory protein complement(1725502..1726092) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252177.1 CDS STMUK_1643 NC_016863.1 1726170 1726883 D similar to Escherichia coli putative oxidoreductase (AAC77206.1); oxidoreductase 1726170..1726883 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252178.1 CDS STMUK_1644 NC_016863.1 1726974 1727843 R putative aldo/keto reductase complement(1726974..1727843) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252179.1 CDS STMUK_1645 NC_016863.1 1728117 1729022 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator complement(1728117..1729022) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252180.1 CDS STMUK_1646 NC_016863.1 1729141 1730070 D putative 2'-hydroxyisoflavone reductase 1729141..1730070 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252181.1 CDS mppA NC_016863.1 1730167 1731780 R similar to Escherichia coli putative transport periplasmic protein (AAC74411.1); negative regulator of mulitple antibiotic resistance; periplasmic murein tripeptide transport protein complement(1730167..1731780) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252182.1 CDS ycjI NC_016863.1 1731970 1732698 D similar to Escherichia coli putative carboxypeptidase (AAC74408.1); murein peptide amidase A 1731970..1732698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252183.1 CDS ycjG NC_016863.1 1732673 1733638 R similar to Escherichia coli putative muconate cycloisomerase I (AAC74407.1); putative chloromuconate cycloisomerase complement(1732673..1733638) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252184.1 CDS tpx NC_016863.1 1733754 1734260 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1733754..1734260 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252185.1 CDS tnpA_6 NC_016863.1 1734491 1734949 D transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 1734491..1734949 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252186.1 CDS tyrR NC_016863.1 1735062 1736603 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1735062..1736603) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252187.1 CDS ycjF NC_016863.1 1736751 1737812 R hypothetical protein complement(1736751..1737812) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252188.1 CDS ycjX NC_016863.1 1737809 1739212 R similar to Escherichia coli putative enzymes (AAC74403.1); putative ATPase complement(1737809..1739212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252189.1 CDS pspE NC_016863.1 1739355 1739669 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1739355..1739669) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252190.1 CDS pspD NC_016863.1 1739745 1739963 R similar to Escherichia coli phage shock protein (AAC74389.1); peripheral inner membrane phage-shock protein complement(1739745..1739963) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252191.1 CDS pspC NC_016863.1 1739986 1740345 R with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC complement(1739986..1740345) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252192.1 CDS pspB NC_016863.1 1740345 1740569 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(1740345..1740569) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252193.1 CDS pspA NC_016863.1 1740629 1741297 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1740629..1741297) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252194.1 CDS pspF NC_016863.1 1741468 1742448 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1741468..1742448 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252195.1 CDS sapA NC_016863.1 1742560 1744209 D peptide transport periplasmic protein SapA precursor (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide transport protein 1742560..1744209 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252196.1 CDS sapB NC_016863.1 1744206 1745171 D peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide transport protein 1744206..1745171 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252197.1 CDS sapC NC_016863.1 1745158 1746048 D peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide transport protein 1745158..1746048 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252198.1 CDS sapD NC_016863.1 1746048 1747040 D peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1746048..1747040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252199.1 CDS sapF NC_016863.1 1747042 1747848 D peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1747042..1747848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252200.1 CDS STMUK_1666 NC_016863.1 1747864 1748571 R putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(1747864..1748571) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252201.1 CDS STMUK_1667 NC_016863.1 1749038 1750411 R putative inner membrane protein complement(1749038..1750411) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252202.1 CDS STMUK_1668 NC_016863.1 1750446 1750625 D putative e6 protein; hypothetical protein 1750446..1750625 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252203.1 CDS ycjE NC_016863.1 1750600 1750899 D hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); putative cytoplasmic protein 1750600..1750899 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252204.1 CDS fabI NC_016863.1 1751017 1751805 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1751017..1751805 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252205.1 CDS yciW NC_016863.1 1752005 1753138 D similar to Escherichia coli putative oxidoreductase (AAC74369.1); putative cytoplasmic protein 1752005..1753138 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252206.1 CDS rnb NC_016863.1 1753227 1755161 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1753227..1755161 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252207.1 CDS yciR NC_016863.1 1755423 1757405 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1755423..1757405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252208.1 CDS STMUK_1674 NC_016863.1 1757527 1757706 D similar to hypothetical protein SC1698 (Pid: YP_216685.1).; hypothetical protein 1757527..1757706 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252209.1 CDS yciT NC_016863.1 1757793 1758545 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC74366.1); DeoR family; putative regulatory protein 1757793..1758545 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252210.1 CDS osmB NC_016863.1 1758804 1759022 D osmotically inducible lipoprotein B (SW:OSMB_SALTY); osmotically inducible; lipoprotein 1758804..1759022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252211.1 CDS yciH NC_016863.1 1759142 1759468 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1759142..1759468) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252212.1 CDS pyrF NC_016863.1 1759468 1760205 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1759468..1760205) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252213.1 CDS yciM NC_016863.1 1760396 1761565 R similar to Escherichia coli putative heat shock protein (AAC74362.1); tetratricopeptide repeat protein complement(1760396..1761565) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252214.1 CDS yciS NC_016863.1 1761572 1761880 R putative inner membrane protein complement(1761572..1761880) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252215.1 CDS pgpB NC_016863.1 1762030 1762794 R similar to Escherichia coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); phosphatidylglycerophosphatase B complement(1762030..1762794) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252216.1 CDS ribA NC_016863.1 1762990 1763580 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1762990..1763580 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252217.1 CDS acnA NC_016863.1 1763636 1766311 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1763636..1766311) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252218.1 CDS STMUK_1684 NC_016863.1 1766867 1766995 R similar to hypothetical protein SC1709 (Pid: YP_216696.1).; hypothetical protein complement(1766867..1766995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252219.1 CDS cysB NC_016863.1 1767288 1768262 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes; transcriptional regulator CysB complement(1767288..1768262) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252220.1 CDS topA NC_016863.1 1768673 1771270 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1768673..1771270) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252221.1 CDS yciN NC_016863.1 1771673 1771924 D hypothetical protein 1771673..1771924 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252222.1 CDS sohB NC_016863.1 1771966 1773012 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(1771966..1773012) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252223.1 CDS yciK NC_016863.1 1773250 1774011 D similar to Escherichia coli putative oxidoreductase (AAC74353.1); short chain dehydrogenase 1773250..1774011 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252224.1 CDS btuR NC_016863.1 1774008 1774598 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1774008..1774598 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252225.1 CDS yciL NC_016863.1 1774685 1775560 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(1774685..1775560) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252226.1 CDS yciO NC_016863.1 1775661 1776281 R translation factor; hypothetical protein complement(1775661..1776281) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252227.1 CDS trpH NC_016863.1 1776289 1777170 R TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; hypothetical protein complement(1776289..1777170) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252228.1 CDS trpL NC_016863.1 1777292 1777336 D trp operon leader peptide (SW:LPW_SALTY); trp operon leader peptide 1777292..1777336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252229.1 CDS trpE NC_016863.1 1777431 1778993 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1777431..1778993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252230.1 CDS trpD NC_016863.1 1778993 1780588 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-rib; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1778993..1780588 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252231.1 CDS trpF NC_016863.1 1780592 1781950 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1780592..1781950 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252232.1 CDS trpB NC_016863.1 1781960 1783153 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1781960..1783153 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252233.1 CDS trpA NC_016863.1 1783153 1783959 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1783153..1783959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252234.1 CDS yciG NC_016863.1 1784439 1784621 D putative cytoplasmic protein 1784439..1784621 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252235.1 CDS yciF NC_016863.1 1784711 1785214 D similar to Escherichia coli putative structural proteins (AAC74340.1); putative cytoplasmic protein 1784711..1785214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252236.1 CDS yciE NC_016863.1 1785288 1785794 D putative cytoplasmic protein 1785288..1785794 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252237.1 CDS STMUK_1703 NC_016863.1 1785814 1786692 D putative catalase (gi|7162108); putative catalase 1785814..1786692 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252238.1 CDS ompW NC_016863.1 1786774 1787412 R receptor for colicin S4; outer membrane protein W complement(1786774..1787412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252239.1 CDS STMUK_1705 NC_016863.1 1787750 1788154 D similar to Escherichia coli putative ferredoxin (AAC73391.1); putative ferredoxin 1787750..1788154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252240.1 CDS yciC NC_016863.1 1788180 1788923 D hypothetical protein 1788180..1788923 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252241.1 CDS yciB NC_016863.1 1788980 1789519 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1788980..1789519 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252242.1 CDS yciA NC_016863.1 1789680 1790081 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1789680..1790081 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252243.1 CDS tonB NC_016863.1 1790141 1790869 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter complement(1790141..1790869) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252244.1 CDS yciI NC_016863.1 1791093 1791389 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1791093..1791389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252245.1 CDS STMUK_1711 NC_016863.1 1791433 1791570 R similar to hypothetical protein SeSA_A1872 (Pid: YP_002114771.1).; hypothetical protein complement(1791433..1791570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252246.1 CDS cls NC_016863.1 1791749 1793209 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1791749..1793209 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252247.1 CDS STMUK_1713 NC_016863.1 1793243 1793572 D similar to E. coli orf, hypothetical protein(AAC74330.1); Blastp hit to AAC74330.1 (135 aa); putative cytoplasmic protein 1793243..1793572 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252248.1 CDS STMUK_1714 NC_016863.1 1793620 1794456 R putative voltage-gated potassium channel complement(1793620..1794456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252249.1 CDS oppF NC_016863.1 1794504 1795508 R oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide transport protein complement(1794504..1795508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252250.1 CDS oppD NC_016863.1 1795505 1796512 R oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein complement(1795505..1796512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252251.1 CDS oppC NC_016863.1 1796524 1797432 R oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide transport protein complement(1796524..1797432) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252252.1 CDS oppB NC_016863.1 1797447 1798367 R oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide transporter permease complement(1797447..1798367) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252253.1 CDS oppA NC_016863.1 1798489 1800237 R periplasmic oligopeptide-binding protein precursor (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide transport protein complement(1798489..1800237) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252254.1 CDS STMUK_1720 NC_016863.1 1800188 1800502 D putative inner membrane protein 1800188..1800502 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252255.1 CDS ychE NC_016863.1 1800885 1801532 R similar to Escherichia coli putative channel protein (AAC74324.1); MarC family; hypothetical protein complement(1800885..1801532) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252256.1 CDS adhE NC_016863.1 1802009 1804687 D similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); multifunctional alcohol dehydrogenase AdhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1802009..1804687 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252257.1 CDS tdk NC_016863.1 1804884 1805501 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1804884..1805501) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252258.1 CDS hns NC_016863.1 1806164 1806577 D DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; global DNA-binding transcriptional dual regulator H-NS 1806164..1806577 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252259.1 CDS galU NC_016863.1 1806709 1807617 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1806709..1807617) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252260.1 CDS hnr NC_016863.1 1807820 1808833 R similar to Escherichia coli Hnr protein (AAC74317.1); for protein turnover; involved in mouse virulence; response regulator of RpoS complement(1807820..1808833) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252261.1 CDS ychK NC_016863.1 1808924 1809829 R hypothetical protein complement(1808924..1809829) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252262.1 CDS ychJ NC_016863.1 1809940 1810398 D hypothetical protein 1809940..1810398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252263.1 CDS purU NC_016863.1 1810449 1811291 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1810449..1811291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252264.1 CDS STMUK_1732 NC_016863.1 1812607 1814136 R contains TPR repeats; hypothetical protein complement(1812607..1814136) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252265.1 CDS narI NC_016863.1 1814378 1815055 R similar to Escherichia coli nitrate reductase 1; cytochrome b(NR); gamma subunit (AAC74311.1); nitrate reductase 1 subunit gamma complement(1814378..1815055) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252266.1 CDS narJ NC_016863.1 1815055 1815765 R similar to Escherichia coli nitrate reductase 1; delta subunit; assembly function (AAC74310.1); chaperone required for molybdenum cofactor assembly in nitrate reductase 1; nitrate reductase 1 subunit delta complement(1815055..1815765) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252267.1 CDS narH NC_016863.1 1815762 1817297 R similar to Escherichia coli nitrate reductase 1; FeS; beta subunit (AAC74309.1); nitrate reductase 1 subunit beta complement(1815762..1817297) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252268.1 CDS narG NC_016863.1 1817294 1821037 R similar to Escherichia coli nitrate reductase 1; alpha subunit (AAC74308.1); nitrate reductase 1 subunit alpha complement(1817294..1821037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252269.1 CDS narK NC_016863.1 1821425 1822822 R similar to Escherichia coli nitrite extrusion protein (AAC74307.1); MFS superfamily; nitrite extrusion protein complement(1821425..1822822) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252270.1 CDS narX NC_016863.1 1823163 1824959 D similar to Escherichia coli nitrate/nitrate sensor histidine protein kinase acts on NarL regulator (AAC74306.1); in two component regulatory system; senses nitrate/nitrite; regulates anaerobic respiration and fermentation; nitrate/nitrite sensor protein NarX 1823163..1824959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252271.1 CDS narL NC_016863.1 1824952 1825602 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1824952..1825602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252272.1 CDS ychP NC_016863.1 1825603 1827027 R similar to Escherichia coli putative factor (AAC74304.1); hypothetical protein complement(1825603..1827027) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252273.1 CDS ychN NC_016863.1 1827204 1827557 D putative ACR involved in intracellular sulfur reduction; putative sulfur reduction protein 1827204..1827557 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252274.1 CDS chaB NC_016863.1 1827637 1827867 R in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1827637..1827867) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252275.1 CDS chaA NC_016863.1 1828134 1829234 D similar to Escherichia coli sodium-calcium/proton antiporter (AAC74300.1); CaCA family; calcium/sodium:proton antiporter 1828134..1829234 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252276.1 CDS kdsA NC_016863.1 1829288 1830142 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1829288..1830142) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252277.1 CDS ychA NC_016863.1 1830180 1830989 R putative transcriptional regulator complement(1830180..1830989) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252278.1 CDS sirC NC_016863.1 1830993 1831382 R regulation of invasion genes; (gi|4887121); putative transcriptional regulator complement(1830993..1831382) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252279.1 CDS hemK NC_016863.1 1831379 1832212 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1831379..1832212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252280.1 CDS prfA NC_016863.1 1832212 1833294 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1832212..1833294) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252281.1 CDS hemA NC_016863.1 1833335 1834591 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tet; glutamyl-tRNA reductase complement(1833335..1834591) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252282.1 CDS lolB NC_016863.1 1834905 1835528 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1834905..1835528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252283.1 CDS ipk NC_016863.1 1835525 1836376 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1835525..1836376 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252284.1 CDS prsA NC_016863.1 1836642 1837589 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1836642..1837589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252285.1 CDS ychM NC_016863.1 1837738 1839399 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1837738..1839399 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252286.1 CDS ychH NC_016863.1 1839444 1839722 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein complement(1839444..1839722) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252287.1 CDS pth NC_016863.1 1839974 1840582 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1839974..1840582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252288.1 CDS ychF NC_016863.1 1840699 1841790 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the tra; GTP-dependent nucleic acid-binding protein EngD 1840699..1841790 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252289.1 CDS STMUK_1757 NC_016863.1 1841949 1843214 R putative cytoplasmic protein complement(1841949..1843214) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252290.1 CDS STMUK_1758 NC_016863.1 1843709 1844827 D similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); hydrogenase-1 small subunit 1843709..1844827 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252291.1 CDS STMUK_1759 NC_016863.1 1844824 1846617 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1844824..1846617 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252292.1 CDS STMUK_1760 NC_016863.1 1846636 1847367 D similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); hydrogenase 1 b-type cytochrome subunit 1846636..1847367 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252293.1 CDS STMUK_1761 NC_016863.1 1847364 1847960 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1847364..1847960 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252294.1 CDS STMUK_1762 NC_016863.1 1847950 1848354 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1847950..1848354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252295.1 CDS STMUK_1763 NC_016863.1 1848351 1849199 D similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase-1 protein 1848351..1849199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252296.1 CDS STMUK_1764 NC_016863.1 1849274 1850818 D similar to Escherichia coli probable third cytochrome oxidase subunit I (AAC74063.1); putative cytochrome oxidase subunit I 1849274..1850818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252297.1 CDS STMUK_1765 NC_016863.1 1850830 1851966 D similar to Escherichia coli probable third cytochrome oxidase subunit II (AAC74064.1); putative cytochrome oxidase subunit II 1850830..1851966 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252298.1 CDS STMUK_1766 NC_016863.1 1851979 1852068 D expressed during stationary phase; membrane protein 1851979..1852068 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252299.1 CDS STMUK_1767 NC_016863.1 1852412 1853737 D similar to Escherichia coli NADP-specific glutamate dehydrogenase (AAC74831.1); glutamate dehydrogenase-like protein 1852412..1853737 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252300.1 CDS treA NC_016863.1 1853951 1855663 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1853951..1855663 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252301.1 CDS ymgE NC_016863.1 1855726 1855980 R putative transglycosylase-associated protein complement(1855726..1855980) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252302.1 CDS ycgR NC_016863.1 1856149 1856883 D putative inner membrane protein 1856149..1856883 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252303.1 CDS emtA NC_016863.1 1856897 1857508 R similar to Escherichia coli murein transglycosylase E (AAC74277.1); membrane-bound lytic murein transglycosylase E complement(1856897..1857508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252304.1 CDS ldcA NC_016863.1 1857679 1858593 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1857679..1858593 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252305.1 CDS ycgO NC_016863.1 1858690 1860423 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1858690..1860423 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252306.1 CDS dadX NC_016863.1 1860486 1861556 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(1860486..1861556) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252307.1 CDS dadA NC_016863.1 1861570 1862868 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1861570..1862868) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252308.1 CDS ycgB NC_016863.1 1863191 1864723 D similar to Escherichia coli putative sporulation protein (AAC74272.1); SpoVR family protein 1863191..1864723 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252309.1 CDS fadR NC_016863.1 1864770 1865489 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1864770..1865489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252310.1 CDS nhaB NC_016863.1 1865709 1867253 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1865709..1867253 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252311.1 CDS dsbB NC_016863.1 1867395 1867925 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1867395..1867925 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252312.1 CDS STMUK_1780 NC_016863.1 1868034 1868375 D putative cytoplasmic protein 1868034..1868375 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252313.1 CDS STMUK_1781 NC_016863.1 1868447 1868620 R putative cytoplasmic protein complement(1868447..1868620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252314.1 CDS STMUK_1782 NC_016863.1 1868812 1868949 R putative cytoplasmic protein complement(1868812..1868949) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252315.1 CDS ycgN NC_016863.1 1869301 1869762 R hypothetical protein complement(1869301..1869762) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252316.1 CDS ycgM NC_016863.1 1869840 1870499 R similar to Escherichia coli putative isomerase (AAC74264.1); FAA; hypothetical protein complement(1869840..1870499) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252317.1 CDS ycgL NC_016863.1 1870549 1870881 R putative cytoplasmic protein complement(1870549..1870881) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252318.1 CDS minC NC_016863.1 1870968 1871675 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1870968..1871675 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252319.1 CDS minD NC_016863.1 1871699 1872511 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1871699..1872511 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252320.1 CDS minE NC_016863.1 1872515 1872781 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1872515..1872781 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252321.1 CDS rnd NC_016863.1 1872903 1874030 R similar to Escherichia coli RNase D; processes tRNA precursor (AAC74874.1); ribonuclease D complement(1872903..1874030) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252322.1 CDS tnpA_6 NC_016863.1 1874166 1874624 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(1874166..1874624) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252323.1 CDS fadD NC_016863.1 1874815 1876500 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1874815..1876500) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252324.1 CDS slp NC_016863.1 1876705 1877286 R similar to Escherichia coli putative outer membrane protein (AAC74876.1); putative outer membrane protein complement(1876705..1877286) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252325.1 CDS yeaZ NC_016863.1 1877358 1878053 R putative molecular chaperone complement(1877358..1878053) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252326.1 CDS yoaA NC_016863.1 1878111 1880021 R similar to Escherichia coli putative enzyme (AAC74878.1); putative DNA helicase complement(1878111..1880021) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252327.1 CDS yoaB NC_016863.1 1880152 1880496 D putative translation initiation inhibitor 1880152..1880496 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252328.1 CDS yoaH NC_016863.1 1880502 1880681 R hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein complement(1880502..1880681) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252329.1 CDS pabB NC_016863.1 1880762 1882126 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1880762..1882126 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252330.1 CDS yeaB NC_016863.1 1882130 1882708 D hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); hypothetical protein 1882130..1882708 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252331.1 CDS sdaA NC_016863.1 1882972 1884336 D similar to Escherichia coli L-serine deaminase (AAC74884.1); L-serine deaminase I/L-threonine deaminase I 1882972..1884336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252332.1 CDS STMUK_1800 NC_016863.1 1884372 1886075 D diguanylate cyclase 1884372..1886075 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252333.1 CDS yoaE NC_016863.1 1886097 1887656 R similar to Escherichia coli putative transport protein (AAC74886.1); putative inner membrane protein complement(1886097..1887656) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252334.1 CDS STMUK_1802 NC_016863.1 1887644 1887979 R putative cytoplasmic protein complement(1887644..1887979) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252335.1 CDS manX NC_016863.1 1888129 1889097 D similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); mannose-specific enzyme IIAB 1888129..1889097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252336.1 CDS manY NC_016863.1 1889150 1889950 D similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); mannose-specific enzyme IIC 1889150..1889950 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252337.1 CDS manZ NC_016863.1 1889954 1890814 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1889954..1890814 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252338.1 CDS yebN NC_016863.1 1891686 1892306 D membrane protein YebN; hypothetical protein 1891686..1892306 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252339.1 CDS rrmA NC_016863.1 1892303 1893112 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(1892303..1893112) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252340.1 CDS STMUK_1809 NC_016863.1 1893178 1894923 R similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); putative penicillin-binding protein 3 complement(1893178..1894923) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252341.1 CDS cspC NC_016863.1 1895143 1895352 R cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; putative regulator; cold shock-like protein CspC complement(1895143..1895352) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252342.1 CDS yobF NC_016863.1 1895365 1895508 R putative cytoplasmic protein complement(1895365..1895508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252343.1 CDS STMUK_1812 NC_016863.1 1896157 1896444 R putative periplasmic protein; hypothetical protein complement(1896157..1896444) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252344.1 CDS yobG NC_016863.1 1896515 1896658 R hypothetical protein complement(1896515..1896658) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252345.1 CDS STMUK_1814 NC_016863.1 1896816 1897055 D hypothetical protein 1896816..1897055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252346.1 CDS kdgR NC_016863.1 1897267 1898058 R similar to Escherichia coli putative regulator (AAC74897.1); IclR family; putative transcriptional repressor complement(1897267..1898058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252347.1 CDS STMUK_1816 NC_016863.1 1898234 1899607 D similar to Escherichia coli putative transport protein (AAC74898.1); putative transport protein 1898234..1899607 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252348.1 CDS htpX NC_016863.1 1899655 1900536 R putative metalloprotease; heat shock protein HtpX complement(1899655..1900536) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252349.1 CDS prc NC_016863.1 1900730 1902778 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1900730..1902778) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252350.1 CDS proQ NC_016863.1 1902798 1903484 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(1902798..1903484) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252351.1 CDS yebR NC_016863.1 1903582 1904166 R contains putative GAF domain; putative nucleotide-binding protein complement(1903582..1904166) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252352.1 CDS yebS NC_016863.1 1904208 1905491 D putative inner membrane protein 1904208..1905491 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252353.1 CDS STMUK_1822 NC_016863.1 1905454 1908093 D putative inner membrane protein 1905454..1908093 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252354.1 CDS yebU NC_016863.1 1908171 1909610 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1908171..1909610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252355.1 CDS STMUK_1824 NC_016863.1 1909725 1909964 D putative cytoplasmic protein 1909725..1909964 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252356.1 CDS yebW NC_016863.1 1910075 1910266 D putative inner membrane lipoprotein 1910075..1910266 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252357.1 CDS pphA NC_016863.1 1910285 1910935 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 complement(1910285..1910935) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252358.1 CDS STMUK_1827 NC_016863.1 1910922 1911038 R hypothetical protein complement(1910922..1911038) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252359.1 CDS STMUK_1828 NC_016863.1 1911159 1911323 R putative inner membrane protein complement(1911159..1911323) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252360.1 CDS sopE2 NC_016863.1 1911608 1912330 R SopE2 (gi|9651642); invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; type III-secreted effector protein complement(1911608..1912330) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252361.1 CDS STMUK_1830 NC_016863.1 1913014 1913409 D putative cytoplasmic protein 1913014..1913409 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252362.1 CDS STMUK_1831 NC_016863.1 1913739 1914215 D similar to hypothetical protein STM1856.1N (Pid: NP_945162.1).; hypothetical protein 1913739..1914215 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252363.1 CDS STMUK_1832 NC_016863.1 1914603 1915022 R putative acetyltransferase complement(1914603..1915022) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252364.1 CDS STMUK_1833 NC_016863.1 1915392 1915661 D putative cytoplasmic protein 1915392..1915661 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252365.1 CDS STMUK_1834 NC_016863.1 1915827 1915967 D putative cytoplasmic protein 1915827..1915967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252366.1 CDS STMUK_1835 NC_016863.1 1916304 1916450 R similar to putative transposase (Pid: YP_002637446.1).; hypothetical protein complement(1916304..1916450) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252367.1 CDS STMUK_1836 NC_016863.1 1916450 1917307 R putative transposase complement(1916450..1917307) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252368.1 CDS STMUK_1837 NC_016863.1 1917431 1917799 D similar to E. coli prophage e14 integrase(AAC74224.1); Blastp hit to AAC74224.1 (375 aa); putative cytoplasmic protein 1917431..1917799 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252369.1 CDS pagO NC_016863.1 1919103 1920017 D PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1919103..1920017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252370.1 CDS STMUK_1839 NC_016863.1 1920150 1920308 D putative inner membrane protein 1920150..1920308 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252371.1 CDS STMUK_1840 NC_016863.1 1920318 1920932 D putative inner membrane protein 1920318..1920932 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252372.1 CDS STMUK_1841 NC_016863.1 1921259 1921384 R similar to E. coli inversion of adjacent DNA; atlocus of e14 element (AAC74242.1); Blastp hit toAAC74242.1 (184 aa); putative cytoplasmic protein complement(1921259..1921384) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252373.1 CDS STMUK_1842 NC_016863.1 1921381 1921557 R similar to hypothetical protein SPAB_01328 (Pid: YP_001587571.1).; hypothetical protein complement(1921381..1921557) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252374.1 CDS STMUK_1843 NC_016863.1 1922104 1922262 D hypothetical protein 1922104..1922262 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252375.1 CDS pagK NC_016863.1 1922775 1922975 D PhoPQ-activated gene (gi|2582047); PagK 1922775..1922975 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252376.1 CDS mig3 NC_016863.1 1923072 1923953 R phage tail assembly protein (gi|2460256); phage-tail assembly-like protein complement(1923072..1923953) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252377.1 CDS STMUK_1846 NC_016863.1 1924108 1924371 R hypothetical protein complement(1924108..1924371) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252378.1 CDS STMUK_1847 NC_016863.1 1924679 1924846 D lytic enzyme 1924679..1924846 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252379.1 CDS STMUK_1848 NC_016863.1 1925103 1925636 R phage-tail assembly-like protein complement(1925103..1925636) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252380.1 CDS STMUK_1849 NC_016863.1 1925690 1925977 R hypothetical protein complement(1925690..1925977) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252381.1 CDS STMUK_1850 NC_016863.1 1926110 1926604 D exoVIII; similar to Escherichia coli exonuclease VIII; ds DNA exonuclease; 5'-3' specific (AAC74432.1); RecE-like protein 1926110..1926604 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252382.1 CDS STMUK_1851 NC_016863.1 1926622 1927518 D similar to E. coli prophage e14 integrase(AAC74224.1); Blastp hit to AAC74224.1 (375 aa); putative phage integrase protein 1926622..1927518 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252383.1 CDS STMUK_1852 NC_016863.1 1927715 1927834 R putative cytoplasmic protein complement(1927715..1927834) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252384.1 CDS STMUK_1853 NC_016863.1 1927892 1928245 R putative periplasmic protein; hypothetical protein complement(1927892..1928245) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252385.1 CDS STMUK_1854 NC_016863.1 1928262 1929137 R similar to Escherichia coli putative resistance protein (AAC74910.1); putative inner membrane protein complement(1928262..1929137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252386.1 CDS yobA NC_016863.1 1929138 1929512 R similar to CopC; hypothetical protein complement(1929138..1929512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252387.1 CDS holE NC_016863.1 1929650 1929880 D similar to Escherichia coli DNA polymerase III theta subunit (AAC74912.1); DNA polymerase III subunit theta 1929650..1929880 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252388.1 CDS STMUK_1857 NC_016863.1 1929988 1930644 D putative amidohydrolase 1929988..1930644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252389.1 CDS exoX NC_016863.1 1930668 1931366 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1930668..1931366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252390.1 CDS ptrB NC_016863.1 1931401 1933452 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1931401..1933452) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252391.1 CDS yebE NC_016863.1 1933665 1934324 R putative inner membrane protein complement(1933665..1934324) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252392.1 CDS yebF NC_016863.1 1934418 1934771 R secreted protein; unknown function; hypothetical protein complement(1934418..1934771) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252393.1 CDS yebG NC_016863.1 1934839 1935129 R in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein YebG complement(1934839..1935129) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252394.1 CDS purT NC_016863.1 1935260 1936438 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1935260..1936438 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252395.1 CDS eda NC_016863.1 1936538 1937179 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1936538..1937179) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252396.1 CDS edd NC_016863.1 1937217 1939028 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1937217..1939028) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252397.1 CDS zwf NC_016863.1 1939263 1940738 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1939263..1940738) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252398.1 CDS yebK NC_016863.1 1941080 1941949 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1941080..1941949 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252399.1 CDS pykA NC_016863.1 1942073 1943515 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1942073..1943515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252400.1 CDS msbB NC_016863.1 1943588 1944559 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1943588..1944559) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252401.1 CDS yebA NC_016863.1 1944676 1945995 R hypothetical protein complement(1944676..1945995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252402.1 CDS yebL NC_016863.1 1946011 1947012 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(1946011..1947012) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252403.1 CDS yebM NC_016863.1 1946983 1947789 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1946983..1947789 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252404.1 CDS yebI NC_016863.1 1947786 1948571 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1947786..1948571 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252405.1 CDS ruvB NC_016863.1 1948650 1949660 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; Holliday junction DNA helicase RuvB complement(1948650..1949660) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252406.1 CDS ruvA NC_016863.1 1949669 1950280 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1949669..1950280) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252407.1 CDS yebB NC_016863.1 1952222 1952821 D hypothetical protein 1952222..1952821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252408.1 CDS ruvC NC_016863.1 1952823 1953344 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by; Holliday junction resolvase complement(1952823..1953344) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252409.1 CDS yebC NC_016863.1 1953381 1954121 R hypothetical protein complement(1953381..1954121) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252410.1 CDS ntpA NC_016863.1 1954151 1954603 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1954151..1954603) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252411.1 CDS aspS NC_016863.1 1954706 1956478 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1954706..1956478) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252412.1 CDS yecD NC_016863.1 1956803 1957369 D hypothetical protein 1956803..1957369 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252413.1 CDS yecE NC_016863.1 1957366 1958184 D hypothetical protein 1957366..1958184 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252414.1 CDS yecN NC_016863.1 1958237 1958632 D putative inner membrane protein 1958237..1958632 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252415.1 CDS yecO NC_016863.1 1958673 1959416 D putative SAM-dependent methyltransferase 1958673..1959416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252416.1 CDS yecP NC_016863.1 1959413 1960384 D similar to Escherichia coli putative enzyme (AAC74941.1); hypothetical protein 1959413..1960384 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252417.1 CDS cutC NC_016863.1 1960620 1961366 R similar to Escherichia coli copper homeostasis protein (AAC74944.1); copper homeostasis protein CutC complement(1960620..1961366) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252418.1 CDS yecM NC_016863.1 1961386 1961955 R hypothetical protein complement(1961386..1961955) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252419.1 CDS argS NC_016863.1 1962192 1963925 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1962192..1963925 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252420.1 CDS STMUK_1890 NC_016863.1 1964114 1965985 D penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); putative penicillin-binding protein 1964114..1965985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252421.1 CDS STMUK_1891 NC_016863.1 1966039 1967178 R putative cytoplasmic protein complement(1966039..1967178) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252422.1 CDS flhE NC_016863.1 1967415 1967807 R flagellar protein FlhE precursor (SW:FLHE_SALTY); flagellar protein complement(1967415..1967807) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252423.1 CDS flhA NC_016863.1 1967807 1969885 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1967807..1969885) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252424.1 CDS flhB NC_016863.1 1969878 1971029 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(1969878..1971029) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252425.1 CDS cheZ NC_016863.1 1971223 1971867 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(1971223..1971867) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252426.1 CDS cheY NC_016863.1 1971878 1972267 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY complement(1971878..1972267) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252427.1 CDS cheB NC_016863.1 1972285 1973334 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(1972285..1973334) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252428.1 CDS cheR NC_016863.1 1973331 1974197 R methylates the MCP; chemotaxis methyltransferase CheR complement(1973331..1974197) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252429.1 CDS cheM NC_016863.1 1974351 1976012 R methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II complement(1974351..1976012) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252430.1 CDS cheW NC_016863.1 1976249 1976752 R chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; purine-binding chemotaxis protein complement(1976249..1976752) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252431.1 CDS cheA NC_016863.1 1976773 1978788 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(1976773..1978788) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252432.1 CDS motB NC_016863.1 1978793 1979722 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(1978793..1979722) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252433.1 CDS motA NC_016863.1 1979719 1980606 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(1979719..1980606) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252434.1 CDS flhC NC_016863.1 1980731 1981315 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(1980731..1981315) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252435.1 CDS flhD NC_016863.1 1981312 1981662 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(1981312..1981662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252436.1 CDS STMUK_1906 NC_016863.1 1982336 1982452 D putative cytoplasmic protein 1982336..1982452 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252437.1 CDS yecG NC_016863.1 1982449 1982877 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 1982449..1982877 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252438.1 CDS otsA NC_016863.1 1982895 1984316 R similar to Escherichia coli trehalose-6-phosphate synthase (AAC74966.1); trehalose-6-phosphate synthase complement(1982895..1984316) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252439.1 CDS otsB NC_016863.1 1984291 1985094 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase complement(1984291..1985094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252440.1 CDS araH NC_016863.1 1985728 1986285 R similar to Escherichia coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); putative intracellular protease/amidase complement(1985728..1986285) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252441.1 CDS ftnB NC_016863.1 1986837 1987340 D similar to Escherichia coli ferritin-like protein (AAC74972.1); ferritin-like protein 1986837..1987340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252442.1 CDS STMUK_1912 NC_016863.1 1987519 1988157 R hypothetical protein complement(1987519..1988157) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252443.1 CDS STMUK_1913 NC_016863.1 1988413 1988748 D putative outer membrane lipoprotein 1988413..1988748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252444.1 CDS ftn NC_016863.1 1988988 1989485 D cytoplasmic iron storage protein; ferritin 1988988..1989485 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252445.1 CDS yecH NC_016863.1 1989531 1989770 R putative cytoplasmic protein complement(1989531..1989770) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252446.1 CDS tyrP NC_016863.1 1989997 1991208 D similar to Escherichia coli tyrosine-specific transport system (AAC74977.1); HAAAP family; tyrosine-specific transport protein 1989997..1991208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252447.1 CDS yecA NC_016863.1 1991283 1991948 R similar to the C-terminal domain of SecA; hypothetical protein complement(1991283..1991948) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252448.1 CDS STMUK_1918 NC_016863.1 1992186 1992512 R putative glucose-6-phosphate dehydrogenase complement(1992186..1992512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252449.1 CDS STMUK_1919 NC_016863.1 1992725 1994164 R putative cell wall-associated hydrolase complement(1992725..1994164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252450.1 CDS STMUK_1920 NC_016863.1 1994377 1994709 R putative inner membrane protein complement(1994377..1994709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252451.1 CDS pgsA NC_016863.1 1995410 1995958 R similar to Escherichia coli phosphatidylglycerophosphate synthetase/CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); phosphatidylglycerophosphate synthetase complement(1995410..1995958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252452.1 CDS uvrC NC_016863.1 1996015 1997847 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1996015..1997847) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252453.1 CDS sirA NC_016863.1 1997844 1998500 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate v; response regulator complement(1997844..1998500) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252454.1 CDS STMUK_1927 NC_016863.1 1998812 1998967 D putative inner membrane protein 1998812..1998967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252455.1 CDS yecF NC_016863.1 1998964 1999188 D hypothetical protein 1998964..1999188 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252456.1 CDS sdiA NC_016863.1 1999255 1999977 R regulates genes involved in cell division; DNA-binding transcriptional activator SdiA complement(1999255..1999977) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252457.1 CDS yecC NC_016863.1 2000209 2000961 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC74984.1); putative amino-acid ABC transporter ATP-binding protein YecC complement(2000209..2000961) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252458.1 CDS yecS NC_016863.1 2000958 2001626 R similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type amino acid transporter permease component complement(2000958..2001626) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252459.1 CDS yedO NC_016863.1 2001647 2002633 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2001647..2002633) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252460.1 CDS fliY NC_016863.1 2002787 2003587 R similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); cystine transporter subunit complement(2002787..2003587) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252461.1 CDS fliZ NC_016863.1 2003734 2004285 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasi; flagella biosynthesis protein FliZ complement(2003734..2004285) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252462.1 CDS fliA NC_016863.1 2004344 2005063 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2004344..2005063) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252463.1 CDS tnpA_6 NC_016863.1 2005332 2005790 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(2005332..2005790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252464.1 CDS fliB NC_016863.1 2005971 2007176 R N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase complement(2005971..2007176) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252465.1 CDS fliC NC_016863.1 2007255 2008742 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2007255..2008742) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252466.1 CDS fliD NC_016863.1 2008999 2010402 D involved in flagellin assembly; flagellar capping protein 2008999..2010402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252467.1 CDS fliS NC_016863.1 2010417 2010824 D flagellin specific chaperone; flagellar protein FliS 2010417..2010824 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252468.1 CDS fliT NC_016863.1 2010824 2011192 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter; flagellar biosynthesis protein FliT 2010824..2011192 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252469.1 CDS amyA NC_016863.1 2011264 2012748 D converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2011264..2012748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252470.1 CDS yedD NC_016863.1 2012788 2013213 R hypothetical 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); hypothetical protein complement(2012788..2013213) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252471.1 CDS yedE NC_016863.1 2013339 2014604 D hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; putative inner membrane protein 2013339..2014604 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252472.1 CDS yedF NC_016863.1 2014601 2014834 D hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2014601..2014834 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252473.1 CDS STMUK_1946 NC_016863.1 2015099 2015485 D putative 50S ribosomal protein 2015099..2015485 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252474.1 CDS fliE NC_016863.1 2015605 2015919 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2015605..2015919) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252475.1 CDS fliF NC_016863.1 2016136 2017818 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2016136..2017818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252476.1 CDS fliG NC_016863.1 2017811 2018806 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2017811..2018806 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252477.1 CDS fliH NC_016863.1 2018799 2019506 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2018799..2019506 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252478.1 CDS fliI NC_016863.1 2019506 2020876 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2019506..2020876 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252479.1 CDS fliJ NC_016863.1 2020898 2021341 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2020898..2021341 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252480.1 CDS fliK NC_016863.1 2021338 2022555 D flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein 2021338..2022555 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252481.1 CDS fliL NC_016863.1 2022660 2023127 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2022660..2023127 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252482.1 CDS fliM NC_016863.1 2023132 2024136 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2023132..2024136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252483.1 CDS fliN NC_016863.1 2024133 2024546 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2024133..2024546 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252484.1 CDS fliO NC_016863.1 2024546 2024923 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2024546..2024923 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252485.1 CDS fliP NC_016863.1 2024923 2025660 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2024923..2025660 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252486.1 CDS fliQ NC_016863.1 2025670 2025939 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2025670..2025939 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252487.1 CDS fliR NC_016863.1 2025948 2026742 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2025948..2026742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252488.1 CDS rcsA NC_016863.1 2027024 2027647 D positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); colanic acid capsular biosynthesis activation protein A 2027024..2027647 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252489.1 CDS STMUK_1962 NC_016863.1 2027686 2027880 R similar to hypothetical protein STY2191 (Pid: NP_456544.1).; hypothetical protein complement(2027686..2027880) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252490.1 CDS yodD NC_016863.1 2028009 2028236 D putative cytoplasmic protein 2028009..2028236 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252491.1 CDS yedP NC_016863.1 2028546 2029361 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2028546..2029361 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252492.1 CDS STMUK_1965 NC_016863.1 2029340 2031052 R putative inner membrane protein complement(2029340..2031052) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252493.1 CDS STMUK_1966 NC_016863.1 2031217 2031462 R putative cytoplasmic protein complement(2031217..2031462) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252494.1 CDS yedI NC_016863.1 2031479 2032390 R hypothetical protein complement(2031479..2032390) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252495.1 CDS yedA NC_016863.1 2032566 2033486 D similar to Escherichia coli putative transmembrane subunit (AAC75025.1); hypothetical protein 2032566..2033486 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252496.1 CDS vsr NC_016863.1 2033475 2033945 R similar to Escherichia coli DNA mismatch endonuclease patch repair protein (AAC75026.1); patch repair protein; DNA mismatch endonuclease complement(2033475..2033945) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252497.1 CDS dcm NC_016863.1 2033926 2035356 R similar to Escherichia coli DNA cytosine methylase (AAC75027.1); DNA cytosine methylase complement(2033926..2035356) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252498.1 CDS yedJ NC_016863.1 2035430 2036125 R hypothetical protein complement(2035430..2036125) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252499.1 CDS STMUK_1972 NC_016863.1 2036217 2036516 R putative inner membrane protein complement(2036217..2036516) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252500.1 CDS ompS NC_016863.1 2037166 2038362 D similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative porin 2037166..2038362 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252501.1 CDS cspB NC_016863.1 2038822 2039034 R similar to Escherichia coli cold shock-like protein (AAC74625.1); putative cold-shock protein complement(2038822..2039034) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252502.1 CDS umuC NC_016863.1 2039489 2040757 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2039489..2040757) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252503.1 CDS umuD NC_016863.1 2040760 2041179 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2040760..2041179) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252504.1 CDS STMUK_1977 NC_016863.1 2041306 2041467 R putative cytoplasmic protein complement(2041306..2041467) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252505.1 CDS STMUK_1978 NC_016863.1 2042098 2042319 R hypothetical protein complement(2042098..2042319) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252506.1 CDS STMUK_1979 NC_016863.1 2042532 2043539 D hypothetical protein 2042532..2043539 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252507.1 CDS STMUK_1980 NC_016863.1 2043540 2043689 R hypothetical protein complement(2043540..2043689) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252508.1 CDS STMUK_1981 NC_016863.1 2043824 2044393 R hypothetical protein complement(2043824..2044393) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252509.1 CDS STMUK_1982 NC_016863.1 2044393 2045955 R similar to tail fiber protein in phage P2; phage tail-like protein complement(2044393..2045955) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252510.1 CDS STMUK_1983 NC_016863.1 2045942 2046529 R hypothetical protein complement(2045942..2046529) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252511.1 CDS STMUK_1984 NC_016863.1 2046532 2047053 R similar to tail protein (Pid: YP_002117168.1).; hypothetical protein complement(2046532..2047053) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252512.1 CDS STMUK_1985 NC_016863.1 2047088 2047612 R similar to tail protein (Pid: YP_002117168.1).; hypothetical protein complement(2047088..2047612) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252513.1 CDS STMUK_1986 NC_016863.1 2047605 2048018 R similar to phage protein (Pid: YP_002244021.1).; hypothetical protein complement(2047605..2048018) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252514.1 CDS STMUK_1987 NC_016863.1 2048023 2048556 R similar to bacteriophage Mu Gp45 protein (Pid: YP_002216016.1).; hypothetical protein complement(2048023..2048556) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252515.1 CDS STMUK_1988 NC_016863.1 2048556 2049614 R similar to bacteriophage Mu P protein (Pid: YP_002115113.1).; hypothetical protein complement(2048556..2049614) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252516.1 CDS STMUK_1989 NC_016863.1 2049611 2050951 R similar to tail/DNA circulation protein (Pid: YP_002216017.1).; hypothetical protein complement(2049611..2050951) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252517.1 CDS STMUK_1990 NC_016863.1 2050985 2052913 R similar to tail protein (Pid: YP_002216018.1).; hypothetical protein complement(2050985..2052913) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252518.1 CDS STMUK_1991 NC_016863.1 2052998 2053324 R similar to hypothetical protein SeSA_A4474 (Pid: YP_002117161.1).; hypothetical protein complement(2052998..2053324) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252519.1 CDS STMUK_1992 NC_016863.1 2053321 2053677 R similar to tail tube protein (Pid: YP_002117160.1).; hypothetical protein complement(2053321..2053677) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252520.1 CDS STMUK_1993 NC_016863.1 2053677 2055173 R similar to bacteriophage Mu tail sheath protein (Pid: YP_002115118.1).; hypothetical protein complement(2053677..2055173) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252521.1 CDS STMUK_1994 NC_016863.1 2055163 2055327 R similar to hypothetical protein SPAB_02157 (Pid: YP_001588373.1).; hypothetical protein complement(2055163..2055327) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252522.1 CDS STMUK_1995 NC_016863.1 2055331 2055891 R similar to hypothetical protein SeD_A2261 (Pid: YP_002216023.1).; hypothetical protein complement(2055331..2055891) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252523.1 CDS STMUK_1996 NC_016863.1 2055888 2056400 R similar to hypothetical protein SPAB_02159 (Pid: YP_001588375.1).; hypothetical protein complement(2055888..2056400) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252524.1 CDS STMUK_1997 NC_016863.1 2056372 2056776 R similar to hypothetical protein SPAB_02160 (Pid: YP_001588376.1).; hypothetical protein complement(2056372..2056776) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252525.1 CDS STMUK_1998 NC_016863.1 2056773 2057096 R similar to hypothetical protein SeSA_A2261 (Pid: YP_002115123.1).; hypothetical protein complement(2056773..2057096) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252526.1 CDS STMUK_1999 NC_016863.1 2057099 2057299 R similar to hypothetical protein SPAB_02162 (Pid: YP_001588378.1).; hypothetical protein complement(2057099..2057299) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252527.1 CDS STMUK_2000 NC_016863.1 2057350 2058555 R similar to phage major capsid protein, HK97 family (Pid: YP_002216028.1).; hypothetical protein complement(2057350..2058555) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252528.1 CDS STMUK_2001 NC_016863.1 2058570 2059220 R similar to phage prohead protease, HK97 family (Pid: YP_002115126.1).; hypothetical protein complement(2058570..2059220) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252529.1 CDS STMUK_2002 NC_016863.1 2059198 2060439 R similar to putative phage portal protein (Pid: YP_002381789.1).; hypothetical protein complement(2059198..2060439) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252530.1 CDS STMUK_2003 NC_016863.1 2060439 2060621 R similar to hypothetical protein SeSA_A2266 (Pid: YP_002115128.1).; hypothetical protein complement(2060439..2060621) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252531.1 CDS STMUK_2004 NC_016863.1 2060633 2062366 R similar to putative phage terminase, large subunit (Pid: YP_002216031.1).; hypothetical protein complement(2060633..2062366) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252532.1 CDS STMUK_2005 NC_016863.1 2062363 2062857 R similar to hypothetical protein SPAB_02168 (Pid: YP_001588384.1).; hypothetical protein complement(2062363..2062857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252533.1 CDS STMUK_2006 NC_016863.1 2063916 2064335 R similar to hypothetical protein SeD_A0634 (Pid: YP_002214537.1).; hypothetical protein complement(2063916..2064335) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252534.1 CDS STMUK_2007 NC_016863.1 2064548 2065033 R bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein complement(2064548..2065033) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252535.1 CDS STMUK_2008 NC_016863.1 2065647 2065991 R hypothetical protein complement(2065647..2065991) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252536.1 CDS STMUK_2009 NC_016863.1 2066517 2066876 R hypothetical protein complement(2066517..2066876) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252537.1 CDS STMUK_2010 NC_016863.1 2066907 2067530 R similar to hypothetical protein Ent638_2252 (Pid: YP_001176975.1).; hypothetical protein complement(2066907..2067530) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252538.1 CDS STMUK_2011 NC_016863.1 2067541 2068536 R putative cytoplasmic protein complement(2067541..2068536) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252539.1 CDS STMUK_2012 NC_016863.1 2068538 2069398 R similar to hypothetical protein SeHA_C2478 (Pid: YP_002046294.1).; hypothetical protein complement(2068538..2069398) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252540.1 CDS STMUK_2013 NC_016863.1 2069415 2069804 R hypothetical protein complement(2069415..2069804) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252541.1 CDS STMUK_2014 NC_016863.1 2069801 2070694 R similar to putative prophage DNA adenine methylase (Pid: YP_003366151.1).; hypothetical protein complement(2069801..2070694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252542.1 CDS STMUK_2015 NC_016863.1 2071178 2071996 R hypothetical protein complement(2071178..2071996) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252543.1 CDS STMUK_2016 NC_016863.1 2071993 2072217 R hypothetical protein complement(2071993..2072217) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252544.1 CDS STMUK_2017 NC_016863.1 2072214 2073371 R hypothetical protein complement(2072214..2073371) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252545.1 CDS STMUK_2018 NC_016863.1 2073368 2073922 R similar to hypothetical protein SC1197 (Pid: YP_216184.1).; hypothetical protein complement(2073368..2073922) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252546.1 CDS STMUK_2019 NC_016863.1 2073951 2074175 R similar to hypothetical protein SeD_A2288 (Pid: YP_002216048.1).; hypothetical protein complement(2073951..2074175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252547.1 CDS STMUK_2020 NC_016863.1 2074273 2074968 D similar to phage encoded transcriptional regulator (Pid: YP_002244054.1).; hypothetical protein 2074273..2074968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252548.1 CDS STMUK_2021 NC_016863.1 2075621 2076154 D hypothetical protein 2075621..2076154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252549.1 CDS STMUK_2022 NC_016863.1 2076212 2077039 D similar to hypothetical protein SeSA_A4442 (Pid: YP_002117129.1).; hypothetical protein 2076212..2077039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252550.1 CDS STMUK_2023 NC_016863.1 2077176 2077715 D similar to phage protein (Pid: YP_002244058.1).; hypothetical protein 2077176..2077715 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252551.1 CDS STMUK_2024 NC_016863.1 2078013 2078528 D similar to hypothetical protein SC0328 (Pid: YP_215315.1).; hypothetical protein 2078013..2078528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252552.1 CDS STMUK_2025 NC_016863.1 2078525 2079142 D similar to hypothetical protein SARI_02684 (Pid: YP_001571683.1).; hypothetical protein 2078525..2079142 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252553.1 CDS STMUK_2026 NC_016863.1 2079139 2079972 D similar to Eaa protein (Pid: YP_002214510.1).; hypothetical protein 2079139..2079972 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252554.1 CDS STMUK_2027 NC_016863.1 2079976 2080545 D similar to phage protein (Pid: YP_002244063.1).; hypothetical protein 2079976..2080545 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252555.1 CDS STMUK_2028 NC_016863.1 2080570 2080812 D hypothetical protein 2080570..2080812 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252556.1 CDS STMUK_2029 NC_016863.1 2080814 2081803 D similar to phage integrase (Pid: YP_002244065.1).; hypothetical protein 2080814..2081803 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252557.1 CDS yeeI NC_016863.1 2082095 2082892 D putative inner membrane protein 2082095..2082892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252558.1 CDS STMUK_2034 NC_016863.1 2084202 2084675 D putative endoprotease 2084202..2084675 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252559.1 CDS STMUK_2035 NC_016863.1 2085150 2085848 D putative branched chain amino acid transportprotein 2085150..2085848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252560.1 CDS STMUK_2036 NC_016863.1 2086665 2088359 D contains TPR repeats; hypothetical protein 2086665..2088359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252561.1 CDS STMUK_2037 NC_016863.1 2088416 2090146 D hypothetical protein 2088416..2090146 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252562.1 CDS STMUK_2038 NC_016863.1 2090356 2090529 D similar to hypothetical protein SPAB_01098 (Pid: YP_001587350.1).; hypothetical protein 2090356..2090529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252563.1 CDS amn NC_016863.1 2091051 2092505 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2091051..2092505) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252564.1 CDS STMUK_2040 NC_016863.1 2092551 2092712 D putative cytoplasmic protein 2092551..2092712 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252565.1 CDS STMUK_2041 NC_016863.1 2092701 2093027 R similar to STM2508 and STM2902; putative cytoplasmic protein complement(2092701..2093027) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252566.1 CDS yeeO NC_016863.1 2094121 2095578 R MATE family; hypothetical protein complement(2094121..2095578) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252567.1 CDS erfK NC_016863.1 2096040 2096969 R protein ErkF/SrfK precursor (SW:ERFK_SALTY); hypothetical protein complement(2096040..2096969) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252568.1 CDS cobT NC_016863.1 2097047 2098117 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2097047..2098117) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252569.1 CDS cobS NC_016863.1 2098144 2098887 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2098144..2098887) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252570.1 CDS cobU NC_016863.1 2098884 2099429 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2098884..2099429) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252571.1 CDS cbiP NC_016863.1 2099426 2100946 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2099426..2100946) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252572.1 CDS cbiO NC_016863.1 2100943 2101758 R with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit complement(2100943..2101758) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252573.1 CDS cbiQ NC_016863.1 2101767 2102444 R cobalt transport protein CbiQ (SW:CBIQ_SALTY); vitamin B12 biosynthetic protein complement(2101767..2102444) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252574.1 CDS cbiN NC_016863.1 2102431 2102712 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2102431..2102712) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252575.1 CDS cbiM NC_016863.1 2102714 2103451 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2102714..2103451) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252576.1 CDS cbiL NC_016863.1 2103448 2104161 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2103448..2104161) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252577.1 CDS cbiK NC_016863.1 2104158 2104952 R cobalt chelatase (SW:CBIK_SALTY); vitamin B12 biosynthetic protein complement(2104158..2104952) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252578.1 CDS cobK NC_016863.1 2104955 2105746 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cob; cobalt-precorrin-6x reductase complement(2104955..2105746) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252579.1 CDS cbiH NC_016863.1 2105743 2106468 R catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase complement(2105743..2106468) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252580.1 CDS cbiG NC_016863.1 2106468 2107523 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2106468..2107523) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252581.1 CDS cbiF NC_016863.1 2107504 2108277 R precorrin-4 C11-methyltransferase (SW:CBIF_SALTY); vitamin B12 biosynthetic protein complement(2107504..2108277) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252582.1 CDS cbiT NC_016863.1 2108261 2108839 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2108261..2108839) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252583.1 CDS cbiE NC_016863.1 2108829 2109434 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2108829..2109434) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252584.1 CDS cbiD NC_016863.1 2109428 2110567 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2109428..2110567) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252585.1 CDS cbiC NC_016863.1 2110567 2111199 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2110567..2111199) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252586.1 CDS cobD NC_016863.1 2111210 2112169 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2111210..2112169) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252587.1 CDS cbiA NC_016863.1 2112166 2113545 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2112166..2113545) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252588.1 CDS pocR NC_016863.1 2114143 2115054 R regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator complement(2114143..2115054) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252589.1 CDS pduF NC_016863.1 2115271 2116065 R propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator complement(2115271..2116065) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252590.1 CDS pduA NC_016863.1 2116590 2116874 D propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; polyhedral body protein 2116590..2116874 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252591.1 CDS pudB NC_016863.1 2116982 2117683 D propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; polyhedral body protein 2116982..2117683 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252592.1 CDS pduC NC_016863.1 2117702 2119366 D glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2117702..2119366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252593.1 CDS pduD NC_016863.1 2119377 2120051 D propanediol utilization protein; propanediol dehydratase medium subunit 2119377..2120051 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252594.1 CDS pduE NC_016863.1 2120066 2120587 D propanediol utilization protein; propanediol dehydratase small subunit 2120066..2120587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252595.1 CDS pduG NC_016863.1 2120597 2122429 D propanediol utilization protein; propanediol dehydratase reactivation protein 2120597..2122429 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252596.1 CDS pduH NC_016863.1 2122419 2122769 D propanediol utilization protein; propanediol dehydratase reactivation protein 2122419..2122769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252597.1 CDS pduJ NC_016863.1 2122788 2123063 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2122788..2123063 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252598.1 CDS pduK NC_016863.1 2123067 2123549 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2123067..2123549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252599.1 CDS pduL NC_016863.1 2123549 2124181 D propanediol utilization protein 2123549..2124181 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252600.1 CDS pduM NC_016863.1 2124178 2124669 D propanediol utilization protein 2124178..2124669 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252601.1 CDS pduN NC_016863.1 2124673 2124948 D similar to Escherichia coli detox protein (AAC75509.1); propanediol utilization protein; polyhedral body protein 2124673..2124948 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252602.1 CDS pduO NC_016863.1 2124958 2125968 D related to B12-dependent glycerol dehydratase; propanediol utilization protein 2124958..2125968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252603.1 CDS pduP NC_016863.1 2125965 2127359 D similar to Escherichia coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); propanediol utilization protein; CoA-dependent propionaldehyde dehydrogenase 2125965..2127359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252604.1 CDS pduQ NC_016863.1 2127371 2128483 D similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); propanediol utilization protein; propanol dehydrogenase 2127371..2128483 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252605.1 CDS pduS NC_016863.1 2128480 2129835 D similar to Escherichia coli putative membrane protein (AAC74701.1); propanediol utilization protein; polyhedral body protein 2128480..2129835 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252606.1 CDS pduT NC_016863.1 2129838 2130392 D similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2129838..2130392 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252607.1 CDS pduU NC_016863.1 2130392 2130742 D propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; polyhedral body protein 2130392..2130742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252608.1 CDS pduV NC_016863.1 2130747 2131199 D propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein 2130747..2131199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252609.1 CDS pduW NC_016863.1 2131184 2132398 D involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2131184..2132398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252610.1 CDS pduX NC_016863.1 2132456 2133358 D propanediol utilization protein 2132456..2133358 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252611.1 CDS yeeX NC_016863.1 2133392 2133727 R similar to Escherichia coli putative alpha helix protein (AAC75068.1); hypothetical protein complement(2133392..2133727) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252612.1 CDS yeeA NC_016863.1 2133972 2135030 R putative inner membrane protein complement(2133972..2135030) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252613.1 CDS sbmC NC_016863.1 2135149 2135616 R similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY); DNA gyrase inhibitor complement(2135149..2135616) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252614.1 CDS dacD NC_016863.1 2135769 2136941 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase complement(2135769..2136941) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252615.1 CDS phsC NC_016863.1 2137065 2137829 R membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit complement(2137065..2137829) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252616.1 CDS phsB NC_016863.1 2137826 2138404 R PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein complement(2137826..2138404) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252617.1 CDS phsA NC_016863.1 2138419 2140695 R membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase complement(2138419..2140695) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252618.1 CDS sopA NC_016863.1 2141314 2143662 D similar to protein from Salmonella dublin; translocated by SPI-1; type III secretion; secreted effector protein 2141314..2143662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252619.1 CDS sbcB NC_016863.1 2144005 2145435 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2144005..2145435 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252620.1 CDS yeeF NC_016863.1 2145571 2146935 R similar to Escherichia coli putative amino acid/amine transport protein (AAC75075.1); APC family; putative amino acid transport protein complement(2145571..2146935) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252621.1 CDS yeeY NC_016863.1 2147215 2148129 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75076.1); LysR family; putative transcriptional regulator complement(2147215..2148129) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252622.1 CDS yeeZ NC_016863.1 2148175 2148999 R similar to Escherichia coli putative enzyme of sugar metabolism (AAC75077.1); putative dehydratase complement(2148175..2148999) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252623.1 CDS hisG NC_016863.1 2149360 2150259 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2149360..2150259 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252624.1 CDS hisD NC_016863.1 2150362 2151666 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2150362..2151666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252625.1 CDS hisC NC_016863.1 2151663 2152742 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2151663..2152742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252626.1 CDS hisB NC_016863.1 2152739 2153806 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2152739..2153806 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252627.1 CDS hisH NC_016863.1 2153803 2154396 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthe; imidazole glycerol phosphate synthase subunit HisH 2153803..2154396 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252628.1 CDS hisA NC_016863.1 2154396 2155133 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2154396..2155133 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252629.1 CDS hisF NC_016863.1 2155115 2155891 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit act; imidazole glycerol phosphate synthase subunit HisF 2155115..2155891 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252630.1 CDS hisI NC_016863.1 2155885 2156496 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynth; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2155885..2156496 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252631.1 CDS wzzB NC_016863.1 2156577 2157560 R chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide O-antigen chain length regulator complement(2156577..2157560) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252632.1 CDS udg NC_016863.1 2157703 2158869 R UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose/GDP-mannose dehydrogenase complement(2157703..2158869) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252633.1 CDS gnd NC_016863.1 2159106 2160512 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2159106..2160512) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252634.1 CDS rfbP NC_016863.1 2160676 2162106 R undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase complement(2160676..2162106) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252635.1 CDS rfbK NC_016863.1 2162178 2163611 R phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase complement(2162178..2163611) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252636.1 CDS rfbM NC_016863.1 2163598 2165037 R mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase complement(2163598..2165037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252637.1 CDS rfbN NC_016863.1 2165038 2165982 R putative rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; rhamnosyl transferase complement(2165038..2165982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252638.1 CDS rfbU NC_016863.1 2165983 2167044 R RFBU protein (SW:RFBU_SALTY); LPS side chain defect; mannosyl transferase complement(2165983..2167044) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252639.1 CDS rfbV NC_016863.1 2167364 2168365 R RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase complement(2167364..2168365) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252640.1 CDS rfbX NC_016863.1 2168370 2169662 R putative O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; putative O-antigen transferase complement(2168370..2169662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252641.1 CDS rfbJ NC_016863.1 2169744 2170643 R CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase complement(2169744..2170643) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252642.1 CDS rfbH NC_016863.1 2170671 2171984 R lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase complement(2170671..2171984) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252643.1 CDS rfbG NC_016863.1 2172011 2173090 R CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase complement(2172011..2173090) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252644.1 CDS rfbF NC_016863.1 2173095 2173868 R glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase complement(2173095..2173868) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252645.1 CDS rfbI NC_016863.1 2173865 2174857 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2173865..2174857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252646.1 CDS rfbC NC_016863.1 2174863 2175414 R DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase complement(2174863..2175414) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252647.1 CDS rfbA NC_016863.1 2175415 2176293 R glucose-1-phosphate thymidylyltransferase (SW:RFBA_SALTY); dTDP-glucose pyrophosphorylase complement(2175415..2176293) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252648.1 CDS rfbD NC_016863.1 2176341 2177240 R with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase complement(2176341..2177240) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252649.1 CDS rfbB NC_016863.1 2177240 2178325 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase complement(2177240..2178325) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252650.1 CDS galF NC_016863.1 2178702 2179595 R together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF complement(2178702..2179595) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252651.1 CDS wcaM NC_016863.1 2179773 2181176 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; putative colanic acid biosynthesis protein complement(2179773..2181176) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252652.1 CDS wcaL NC_016863.1 2181187 2182407 R putative colanic acid biosynthesis glycosyl transferase WcaL (SW:WCAL_SALTY); in colanic acid gene cluster; putative glycosyl transferase complement(2181187..2182407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252653.1 CDS wcaK NC_016863.1 2182404 2183684 R similar to Escherichia coli putative galactokinase (AAC75106.1); in colanic acid gene cluster; putative pyruvyl transferase complement(2182404..2183684) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252654.1 CDS wzxC NC_016863.1 2183706 2185184 R similar to Escherichia coli probable export protein (AAC75107.1); in colanic acid gene cluster; colanic acid exporter complement(2183706..2185184) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252655.1 CDS wcaJ NC_016863.1 2185317 2186711 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase complement(2185317..2186711) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252656.1 CDS cpsG NC_016863.1 2186765 2188135 R phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase complement(2186765..2188135) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252657.1 CDS manC NC_016863.1 2188246 2189688 R mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase complement(2188246..2189688) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252658.1 CDS wcaI NC_016863.1 2189685 2190908 R similar to Escherichia coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); involved in in colanic acid biosynthesis; putative glycosyl transferase complement(2189685..2190908) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252659.1 CDS wcaH NC_016863.1 2190905 2191378 R similar to Escherichia coli GDP-mannose mannosyl hydrolase (AAC75112.1); in colanic acid biosynthesis; GDP-mannose mannosyl hydrolase complement(2190905..2191378) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252660.1 CDS wcaG NC_016863.1 2191381 2192346 R similar to Escherichia coli putative nucleotide di-P-sugar epimerase/dehydratase (AAC75113.1); GDP fucose synthetase in colanic acid biosyntheis; GDP-fucose synthetase complement(2191381..2192346) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252661.1 CDS gmd NC_016863.1 2192349 2193470 R similar to Escherichia coli GDP-D-mannose dehydratase (AAC75114.1); colanic acid gene cluster; GDP-D-mannose dehydratase complement(2192349..2193470) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252662.1 CDS wcaF NC_016863.1 2193494 2194048 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); putative colanic acid biosynthesis acetyltransferase WcaF complement(2193494..2194048) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252663.1 CDS wcaE NC_016863.1 2194064 2194810 R similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); involved in colanic acid biosynthesis; putative glycosyl transferase complement(2194064..2194810) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252664.1 CDS wcaD NC_016863.1 2194823 2196037 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; putative colanic acid biosynthesis protein complement(2194823..2196037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252665.1 CDS wcaC NC_016863.1 2196012 2197229 R similar to Escherichia coli putative glycosyl transferase (AAC75118.1); involved in colanic acid biosynthesis; putative glycosyl transferase complement(2196012..2197229) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252666.1 CDS wcaB NC_016863.1 2197226 2197714 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and represse; putative colanic acid biosynthesis acetyltransferase WcaB complement(2197226..2197714) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252667.1 CDS wcaA NC_016863.1 2197717 2198559 R similar to Escherichia coli putative regulator (AAC75120.1); involved in colanic acid biosynthesis; putative glycosyl transferase complement(2197717..2198559) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252668.1 CDS wzc NC_016863.1 2198646 2200805 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(2198646..2200805) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252669.1 CDS wzb NC_016863.1 2200802 2201251 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase complement(2200802..2201251) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252670.1 CDS wza NC_016863.1 2201257 2202396 R similar to Escherichia coli putative polysaccharide export protein (AAC75123.1); putative outer membrane polysaccharide export protein complement(2201257..2202396) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252671.1 CDS yegH NC_016863.1 2203071 2204651 D similar to Escherichia coli putative transport protein (AAC75124.1); putative inner membrane protein 2203071..2204651 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252672.1 CDS asmA NC_016863.1 2204737 2206593 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered as; putative assembly protein complement(2204737..2206593) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252673.1 CDS dcd NC_016863.1 2206632 2207213 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2206632..2207213) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252674.1 CDS udk NC_016863.1 2207304 2207945 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2207304..2207945) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252675.1 CDS yegE NC_016863.1 2208276 2211266 D similar to Escherichia coli putative sensor-type protein (AAC75128.1); contains PAS/PAC domain; domain 1/2; diguanylate cyclase 2208276..2211266 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252676.1 CDS yegD NC_016863.1 2212236 2213588 D similar to Escherichia coli putative heat shock protein (AAC75130.1); Hsp70/DnaK; putative chaperone 2212236..2213588 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252677.1 CDS STMUK_2156 NC_016863.1 2214029 2215270 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2214029..2215270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252678.1 CDS yegN NC_016863.1 2215270 2218392 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2215270..2218392 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252679.1 CDS yegO NC_016863.1 2218393 2221473 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2218393..2221473 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252680.1 CDS yegB NC_016863.1 2221470 2222882 D similar to Escherichia coli putative transport protein (AAC75138.1); MFS family; multidrug efflux system protein MdtE 2221470..2222882 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252681.1 CDS baeS NC_016863.1 2222882 2224285 D similar to Escherichia coli sensor protein for BaeR (AAC75139.1); in two-component regulatory system; signal transduction histidine-protein kinase BaeS 2222882..2224285 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252682.1 CDS baeR NC_016863.1 2224282 2225004 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2224282..2225004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252683.1 CDS STMUK_2162 NC_016863.1 2225591 2226475 D putative cytoplasmic protein 2225591..2226475 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252684.1 CDS STMUK_2163 NC_016863.1 2226475 2227191 D putative inner membrane protein 2226475..2227191 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252685.1 CDS STMUK_2164 NC_016863.1 2227202 2229313 D putative inner membrane protein 2227202..2229313 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252686.1 CDS yegQ NC_016863.1 2229429 2230790 D putative protease 2229429..2230790 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252687.1 CDS STMUK_2166 NC_016863.1 2231241 2232287 D putative cytoplasmic protein 2231241..2232287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252688.1 CDS STMUK_2167 NC_016863.1 2232323 2232739 R putative cytoplasmic protein complement(2232323..2232739) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252689.1 CDS STMUK_2168 NC_016863.1 2232861 2233196 R putative inner membrane protein complement(2232861..2233196) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252690.1 CDS yegS NC_016863.1 2233758 2234657 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2233758..2234657 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252691.1 CDS fbaB NC_016863.1 2234710 2235762 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(2234710..2235762) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252692.1 CDS yegT NC_016863.1 2236016 2237287 D similar to Escherichia coli putative nucleoside permease protein (AAC75159.1); MFS family; putative transport protein 2236016..2237287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252693.1 CDS yegU NC_016863.1 2237284 2238288 D putative glycohydrolase 2237284..2238288 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252694.1 CDS yegV NC_016863.1 2238285 2239250 D similar to Escherichia coli putative kinase (AAC75161.1); putative sugar kinase 2238285..2239250 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252695.1 CDS yegW NC_016863.1 2239224 2239970 R similar to Escherichia coli putative transcriptional regulator (AAC75162.1); GntR family; putative regulatory protein complement(2239224..2239970) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252696.1 CDS thiD NC_016863.1 2240006 2240806 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2240006..2240806) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252697.1 CDS thiM NC_016863.1 2240793 2241590 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2240793..2241590) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252698.1 CDS STMUK_2177 NC_016863.1 2242000 2242314 D hypothetical protein 2242000..2242314 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252699.1 CDS stcD NC_016863.1 2242577 2243584 R similar to Escherichia coli putative type-1 fimbrial protein (AAC75169.1); putative outer membrane lipoprotein complement(2242577..2243584) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252700.1 CDS stcC NC_016863.1 2243600 2246089 R similar to Escherichia coli putative outer membrane protein (AAC75170.1); putative outer membrane protein complement(2243600..2246089) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252701.1 CDS stcB NC_016863.1 2246103 2246786 R similar to Escherichia coli putative chaperone (AAC75171.1); putative periplasmic chaperone protein complement(2246103..2246786) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252702.1 CDS stcA NC_016863.1 2246842 2247372 R similar to Escherichia coli putative fimbrial-like protein (AAC75172.1); putative fimbrial-like protein complement(2246842..2247372) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252703.1 CDS yehE NC_016863.1 2247651 2247932 R putative outer membrane protein complement(2247651..2247932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252704.1 CDS mrp NC_016863.1 2248210 2249319 R similar to Escherichia coli putative ATPase (AAC75174.1); putative ATPase complement(2248210..2249319) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252705.1 CDS metG NC_016863.1 2249484 2251517 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold; methionyl-tRNA synthetase 2249484..2251517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252706.1 CDS yehR NC_016863.1 2251758 2252216 D putative lipoprotein 2251758..2252216 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252707.1 CDS STMUK_2186 NC_016863.1 2252388 2252918 D hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2252388..2252918 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252708.1 CDS yehS NC_016863.1 2252975 2253442 R putative cytoplasmic protein complement(2252975..2253442) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252709.1 CDS yehT NC_016863.1 2253489 2254208 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(2253489..2254208) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252710.1 CDS yehU NC_016863.1 2254205 2255890 R similar to Escherichia coli putative 2-component sensor protein (AAC75187.1); putative sensor kinase complement(2254205..2255890) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252711.1 CDS yehV NC_016863.1 2256113 2256844 D similar to Escherichia coli putative transcriptional regulator (AAC75188.1); MerR family; putative transcriptional repressor 2256113..2256844 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252712.1 CDS STMUK_2191 NC_016863.1 2256904 2257011 D hypothetical protein 2256904..2257011 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252713.1 CDS yehW NC_016863.1 2256992 2257723 R similar to Escherichia coli putative transport system permease protein (AAC75189.1); putative ABC-type proline/glycine betaine transport system permease component complement(2256992..2257723) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252714.1 CDS yehX NC_016863.1 2257707 2258654 R similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); putative ABC-type proline/glycine betaine transport system ATPase component complement(2257707..2258654) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252715.1 CDS yehY NC_016863.1 2258647 2259816 R similar to Escherichia coli putative transport system permease protein (AAC75191.1); putative ABC-type proline/glycine betaine transport system permease component complement(2258647..2259816) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252716.1 CDS yehZ NC_016863.1 2259820 2260737 R similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC superfamily binding protein; possibly glycine betaine choline transport for osmoprotection; putative transport protein complement(2259820..2260737) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252717.1 CDS bglX NC_016863.1 2260918 2263215 R periplasmic beta-glucosidase precursor (SW:BGLX_SALTY); periplasmic beta-D-glucoside glucohydrolase complement(2260918..2263215) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252718.1 CDS dld NC_016863.1 2263482 2265212 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2263482..2265212 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252719.1 CDS pbpG NC_016863.1 2265270 2266217 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2265270..2266217) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252720.1 CDS yohC NC_016863.1 2266383 2266970 R putative transport protein complement(2266383..2266970) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252721.1 CDS yohD NC_016863.1 2267102 2267698 D DedA family; hypothetical protein 2267102..2267698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252722.1 CDS yohF NC_016863.1 2267747 2268508 R similar to Escherichia coli putative oxidoreductase (AAC75198.1); acetoin dehydrogenase complement(2267747..2268508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252723.1 CDS yohG NC_016863.1 2268574 2270010 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ complement(2268574..2270010) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252724.1 CDS STMUK_2203 NC_016863.1 2270201 2270398 D putative cytoplasmic protein 2270201..2270398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252725.1 CDS yohI NC_016863.1 2270469 2271407 R similar to Escherichia coli putative nitrogen regulatory protein (AAC75201.1); tRNA-dihydrouridine synthase C complement(2270469..2271407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252726.1 CDS STMUK_2205 NC_016863.1 2271516 2272709 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(2271516..2272709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252727.1 CDS STMUK_2206 NC_016863.1 2272724 2273368 R similar to Escherichia coli regulator of transcription; stringent starvation protein A (AAC76261.1); putative glutathione S-transferase complement(2272724..2273368) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252728.1 CDS STMUK_2207 NC_016863.1 2273377 2274078 R similar to Escherichia coli putative isomerase (AAC74264.1); putative flutathione S-transferase complement(2273377..2274078) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252729.1 CDS STMUK_2208 NC_016863.1 2274094 2275131 R putative 1,2-dioxygenase complement(2274094..2275131) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252730.1 CDS STMUK_2209 NC_016863.1 2275143 2276501 R similar to Escherichia coli putative transport protein (AAC73456.1); putative sugar transporter complement(2275143..2276501) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252731.1 CDS STMUK_2210 NC_016863.1 2276627 2277535 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 2276627..2277535 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252732.1 CDS yohJ NC_016863.1 2277667 2278065 D hypothetical protein 2277667..2278065 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252733.1 CDS yohK NC_016863.1 2278062 2278757 D similar to Escherichia coli putative seritonin transporter (AAC75203.1); hypothetical protein 2278062..2278757 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252734.1 CDS cdd NC_016863.1 2278911 2279795 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2278911..2279795 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252735.1 CDS sanA NC_016863.1 2279972 2280691 D similar to Escherichia coli vancomycin sensitivity (AAC75205.1); hypothetical protein 2279972..2280691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252736.1 CDS STMUK_2215 NC_016863.1 2280688 2280933 D putative inner membrane protein 2280688..2280933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252737.1 CDS STMUK_2216 NC_016863.1 2281138 2282379 D similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2281138..2282379 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252738.1 CDS yeiA NC_016863.1 2282373 2283608 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2282373..2283608 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252739.1 CDS mglC NC_016863.1 2283683 2284693 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein complement(2283683..2284693) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252740.1 CDS mglA NC_016863.1 2284709 2286229 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(2284709..2286229) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252741.1 CDS mglB NC_016863.1 2286363 2287361 R D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose transport protein complement(2286363..2287361) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252742.1 CDS galS NC_016863.1 2287860 2288882 R negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS complement(2287860..2288882) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252743.1 CDS yeiB NC_016863.1 2289032 2290174 R hypothetical protein complement(2289032..2290174) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252744.1 CDS folE NC_016863.1 2290189 2290857 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2290189..2290857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252745.1 CDS yeiG NC_016863.1 2291187 2292044 D similar to Escherichia coli putative esterase (AAC75215.1); putative esterase 2291187..2292044 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252746.1 CDS STMUK_2225 NC_016863.1 2292033 2292422 R putative transcriptional regulator complement(2292033..2292422) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252747.1 CDS STMUK_2226 NC_016863.1 2292427 2293794 R similar to Escherichia coli L-serine deaminase (AAC74884.1); putative L-serine dehydratase complement(2292427..2293794) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252748.1 CDS STMUK_2227 NC_016863.1 2294011 2294898 D similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1); putative phosphoserine phosphatase 2294011..2294898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252749.1 CDS STMUK_2228 NC_016863.1 2294931 2296253 D similar to Escherichia coli regulator of uhpT (AAC76690.1); putative regulatory protein 2294931..2296253 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252750.1 CDS cirA NC_016863.1 2296297 2298288 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor complement(2296297..2298288) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252751.1 CDS lysP NC_016863.1 2298633 2300102 R similar to Escherichia coli lysine-specific permease (AAC75217.1); APC family; lysine transporter complement(2298633..2300102) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252752.1 CDS yeiE NC_016863.1 2300292 2301155 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75218.1); LysR family; putative DNA-binding transcriptional regulator complement(2300292..2301155) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252753.1 CDS yeiH NC_016863.1 2301276 2302325 D putative inner membrane protein 2301276..2302325 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252754.1 CDS nfo NC_016863.1 2302404 2303261 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2302404..2303261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252755.1 CDS fruA NC_016863.1 2303326 2305014 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system fructose-specific transporter subunit IIBC complement(2303326..2305014) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252756.1 CDS fruK NC_016863.1 2305031 2305969 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(2305031..2305969) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252757.1 CDS fruF NC_016863.1 2305969 2307099 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then tra; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(2305969..2307099) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252758.1 CDS STMUK_2237 NC_016863.1 2307167 2307274 R similar to hypothetical protein SPAB_00801 (Pid: YP_001587058.1).; hypothetical protein complement(2307167..2307274) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252759.1 CDS setB NC_016863.1 2307468 2308649 D sugar efflux transporter B (SW:SETB_SALTY); proton efflux pump 2307468..2308649 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252760.1 CDS STMUK_2239 NC_016863.1 2308714 2309379 R putative inner membrane protein complement(2308714..2309379) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252761.1 CDS STMUK_2240 NC_016863.1 2309381 2309503 R putative inner membrane protein complement(2309381..2309503) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252762.1 CDS yeiP NC_016863.1 2310238 2311041 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2310238..2311041 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252763.1 CDS yeiR NC_016863.1 2311254 2312240 D putative cobalamin biosynthetic protein 2311254..2312240 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252764.1 CDS yeiU NC_016863.1 2312270 2312989 D putative permease 2312270..2312989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252765.1 CDS spr NC_016863.1 2313403 2313975 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2313403..2313975 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252766.1 CDS rtn NC_016863.1 2314301 2315857 D involved in resistance to lambda and N4 phages; hypothetical protein 2314301..2315857 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252767.1 CDS yejA NC_016863.1 2315964 2317769 D putative ABC transporter periplasmic binding protein 2315964..2317769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252768.1 CDS yejB NC_016863.1 2317779 2318873 D similar to Escherichia coli putative transport system permease protein (AAC75239.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease 2317779..2318873 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252769.1 CDS yejE NC_016863.1 2318873 2319898 D similar to Escherichia coli putative transport system permease protein (AAC75240.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease component 2318873..2319898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252770.1 CDS yejF NC_016863.1 2319900 2321489 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC75241.1); contains duplicated ATPase domain; ABC transporter ATP-binding protein 2319900..2321489 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252771.1 CDS yejG NC_016863.1 2321493 2321837 R hypothetical protein complement(2321493..2321837) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252772.1 CDS bcr NC_016863.1 2322228 2323418 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2322228..2323418) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252773.1 CDS rsuA NC_016863.1 2323446 2324141 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2323446..2324141) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252774.1 CDS yejH NC_016863.1 2324293 2326053 D similar to Escherichia coli putative ATP-dependent helicase (AAC75245.1); putative ATP-dependent helicase 2324293..2326053 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252775.1 CDS rplY NC_016863.1 2326178 2326462 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress respo; 50S ribosomal protein L25 2326178..2326462 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252776.1 CDS STMUK_2255 NC_016863.1 2326571 2327191 R putative inner membrane protein complement(2326571..2327191) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252777.1 CDS yejK NC_016863.1 2327219 2328226 R present in spermidine nucleoids; nucleoid-associated protein NdpA complement(2327219..2328226) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252778.1 CDS yejL NC_016863.1 2328406 2328633 D hypothetical protein 2328406..2328633 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252779.1 CDS yejM NC_016863.1 2328665 2330425 D hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; putative hydrolase 2328665..2330425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252780.1 CDS STMUK_2260 NC_016863.1 2330706 2331209 R putative peptidase UmuD; similar to Escherichia coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); DNA polymerase V subunit complement(2330706..2331209) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252781.1 CDS STMUK_2261 NC_016863.1 2331237 2331527 D similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; ssrB-regulated factor; virulence protein 2331237..2331527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252782.1 CDS oafA NC_016863.1 2331875 2333704 D O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2331875..2333704 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252783.1 CDS STMUK_2263 NC_016863.1 2333758 2334201 R putative cytoplasmic protein complement(2333758..2334201) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252784.1 CDS STMUK_2264 NC_016863.1 2334579 2335106 R putative phage tail fiber assembly protein complement(2334579..2335106) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252785.1 CDS STMUK_2265 NC_016863.1 2335109 2336350 R hypothetical protein complement(2335109..2336350) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252786.1 CDS STMUK_2266 NC_016863.1 2336411 2336929 R hypothetical protein complement(2336411..2336929) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252787.1 CDS STMUK_2267 NC_016863.1 2336943 2337272 R putative inner membrane protein complement(2336943..2337272) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252788.1 CDS STMUK_2268 NC_016863.1 2337569 2338900 D hypothetical protein 2337569..2338900 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252789.1 CDS STMUK_2269 NC_016863.1 2338929 2339297 R similar to antiterminator protein Q of phage P5; putative phage antiterminator complement(2338929..2339297) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252790.1 CDS STMUK_2270 NC_016863.1 2339312 2340301 R putative cytoplasmic protein complement(2339312..2340301) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252791.1 CDS STMUK_2271 NC_016863.1 2340309 2340539 R similar to hypothetical protein SC1204 (Pid: YP_216191.1).; hypothetical protein complement(2340309..2340539) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252792.1 CDS sspH2 NC_016863.1 2340630 2342996 R induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; hypothetical protein complement(2340630..2342996) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252793.1 CDS STMUK_2273 NC_016863.1 2343165 2343368 R putative phage tail fiber protein complement(2343165..2343368) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252794.1 CDS STMUK_2274 NC_016863.1 2343665 2344456 R similar to Escherichia coli putative membrane protein (AAC74454.1); putative tail fiber protein of phage complement(2343665..2344456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252795.1 CDS STMUK_2275 NC_016863.1 2344759 2344962 D similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; virulence protein 2344759..2344962 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252796.1 CDS STMUK_2276 NC_016863.1 2345154 2345717 R putative outer membrane protein complement(2345154..2345717) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252797.1 CDS narP NC_016863.1 2346447 2347094 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2346447..2347094 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252798.1 CDS ccmH NC_016863.1 2347138 2348181 R similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit complement(2347138..2348181) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252799.1 CDS ccmG NC_016863.1 2348178 2348735 R similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase complement(2348178..2348735) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252800.1 CDS ccmE NC_016863.1 2348732 2350663 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE complement(2348732..2350663) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252801.1 CDS ccmE NC_016863.1 2350660 2351139 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE complement(2350660..2351139) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252802.1 CDS ccmD NC_016863.1 2351136 2351348 R similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C complement(2351136..2351348) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252803.1 CDS ccmC NC_016863.1 2351345 2352082 R similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(2351345..2352082) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252804.1 CDS ccmB NC_016863.1 2352134 2352793 R similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(2352134..2352793) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252805.1 CDS ccmA NC_016863.1 2352790 2353407 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2352790..2353407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252806.1 CDS napC NC_016863.1 2353428 2354030 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2353428..2354030) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252807.1 CDS napB NC_016863.1 2354040 2354489 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2354040..2354489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252808.1 CDS napH NC_016863.1 2354605 2355474 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2354605..2355474) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252809.1 CDS napG NC_016863.1 2355461 2356156 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2355461..2356156) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252810.1 CDS napA NC_016863.1 2356163 2358649 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2356163..2358649) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252811.1 CDS napD NC_016863.1 2358646 2358909 R assembly protein for periplasmic nitrate reductase complement(2358646..2358909) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252812.1 CDS napF NC_016863.1 2358899 2359390 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein complement(2358899..2359390) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252813.1 CDS eco NC_016863.1 2359804 2360298 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2359804..2360298 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252814.1 CDS yojI NC_016863.1 2360507 2362150 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component complement(2360507..2362150) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252815.1 CDS alkB NC_016863.1 2362226 2362876 R alkylated DNA repair protein ALKB (SW:ALKB_SALTY); specific for alkylated DNA; DNA repair system protein complement(2362226..2362876) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252816.1 CDS ada NC_016863.1 2362879 2363940 R ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; O6-methylguanine-DNA methyltransferase/transcription activator/repressor complement(2362879..2363940) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252817.1 CDS apbE NC_016863.1 2364021 2365073 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the; thiamine biosynthesis lipoprotein ApbE complement(2364021..2365073) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252818.1 CDS ompC NC_016863.1 2365188 2366324 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2365188..2366324) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252819.1 CDS yojN NC_016863.1 2367053 2369722 D similar to Escherichia coli putative 2-component sensor protein (AAC75276.1); regulatory protein; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2367053..2369722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252820.1 CDS rcsB NC_016863.1 2369739 2370389 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2369739..2370389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252821.1 CDS rcsC NC_016863.1 2370492 2373338 R similar to Escherichia coli sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB (AAC75278.1); in two-component regulatory system; regulates colanic capsule biosynthesis; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2370492..2373338) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252822.1 CDS gyrA NC_016863.1 2373456 2376092 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2373456..2376092) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252823.1 CDS STMUK_2303 NC_016863.1 2376502 2377704 R similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase complement(2376502..2377704) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252824.1 CDS STMUK_2304 NC_016863.1 2377719 2379044 R similar to Escherichia coli putative transport protein (AAC75306.1); putative permease complement(2377719..2379044) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252825.1 CDS STMUK_2305 NC_016863.1 2379094 2379978 D GntR family; putative regulatory protein 2379094..2379978 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252826.1 CDS ubiG NC_016863.1 2380061 2380789 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2380061..2380789 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252827.1 CDS nrdA NC_016863.1 2381145 2383430 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2381145..2383430 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252828.1 CDS nrdB NC_016863.1 2383543 2384673 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2383543..2384673 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252829.1 CDS yfaE NC_016863.1 2384673 2384927 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2384673..2384927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252830.1 CDS STMUK_2310 NC_016863.1 2384929 2386119 R similar to Escherichia coli putative transport (AAC76498.1); putative permease complement(2384929..2386119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252831.1 CDS STMUK_2311 NC_016863.1 2386281 2387159 D LysR family; putative transcriptional regulator 2386281..2387159 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252832.1 CDS glpQ NC_016863.1 2387275 2388345 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2387275..2388345) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252833.1 CDS glpT NC_016863.1 2388350 2389708 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2388350..2389708) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252834.1 CDS glpA NC_016863.1 2389981 2391609 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2389981..2391609 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252835.1 CDS glpB NC_016863.1 2391599 2392858 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2391599..2392858 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252836.1 CDS glpC NC_016863.1 2392855 2394045 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2392855..2394045 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252837.1 CDS sseL NC_016863.1 2394540 2395493 D similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity is; deubiquitinase 2394540..2395493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252838.1 CDS STMUK_2318 NC_016863.1 2395603 2395779 R putative cytoplasmic protein complement(2395603..2395779) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252839.1 CDS STMUK_2319 NC_016863.1 2395785 2396588 R putative aldolase complement(2395785..2396588) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252840.1 CDS yfaV NC_016863.1 2396614 2397903 R similar to Escherichia coli putative transport protein (AAC75306.1); MFS family; putative transport protein complement(2396614..2397903) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252841.1 CDS yfaW NC_016863.1 2397959 2399176 R similar to Escherichia coli putative racemase (AAC75307.1); putative galactonate dehydratase complement(2397959..2399176) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252842.1 CDS yfaX NC_016863.1 2399178 2399960 R similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator complement(2399178..2399960) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252843.1 CDS STMUK_2323 NC_016863.1 2400210 2401406 R similar to molybdopterin-biosynthesis; competence damage-inducible protein A complement(2400210..2401406) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252844.1 CDS yfaZ NC_016863.1 2401521 2402168 R putative inner membrane protein complement(2401521..2402168) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252845.1 CDS yfaO NC_016863.1 2402342 2402767 D similar to oxidative damage repair enzymes; putative NTP pyrophosphohydrolase 2402342..2402767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252846.1 CDS ais NC_016863.1 2402812 2403417 R similar to Escherichia coli protein induced by aluminum (AAC75312.1); aluminum-inducible protein complement(2402812..2403417) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252847.1 CDS yfbE NC_016863.1 2403698 2404855 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2403698..2404855 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252848.1 CDS pmrF NC_016863.1 2404858 2405841 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2404858..2405841 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252849.1 CDS yfbG NC_016863.1 2405838 2407820 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutan; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2405838..2407820 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252850.1 CDS STMUK_2330 NC_016863.1 2407817 2408716 D putative cytoplasmic protein 2407817..2408716 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252851.1 CDS arnT NC_016863.1 2408713 2410359 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2408713..2410359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252852.1 CDS STMUK_2332 NC_016863.1 2410356 2410691 D putative inner membrane protein 2410356..2410691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252853.1 CDS STMUK_2333 NC_016863.1 2410691 2411068 D similar to Escherichia coli putative transport/receptor protein (AAC75318.1); hypothetical protein 2410691..2411068 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252854.1 CDS pmrD NC_016863.1 2411063 2411320 R polymyxin b resistance protein PmrD (SW:PMRD_SALTY); polymyxin resistance protein B complement(2411063..2411320) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252855.1 CDS menE NC_016863.1 2411418 2412785 R O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase complement(2411418..2412785) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252856.1 CDS menC NC_016863.1 2412782 2413744 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(2412782..2413744) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252857.1 CDS menB NC_016863.1 2413744 2414601 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2413744..2414601) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252858.1 CDS yfbB NC_016863.1 2414616 2415374 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB complement(2414616..2415374) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252859.1 CDS menD NC_016863.1 2415371 2417041 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2415371..2417041) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252860.1 CDS menF NC_016863.1 2417127 2418422 R synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase complement(2417127..2418422) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252861.1 CDS elaB NC_016863.1 2418523 2418834 R hypothetical protein complement(2418523..2418834) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252862.1 CDS elaA NC_016863.1 2418883 2419344 R hypothetical protein complement(2418883..2419344) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252863.1 CDS elaC NC_016863.1 2419405 2420322 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; assoc; ribonuclease Z 2419405..2420322 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252864.1 CDS STMUK_2344 NC_016863.1 2420388 2421389 D similar to Escherichia coli positive regulator of CheA protein activity (AAC74957.1); putative chemotaxis signal transduction protein 2420388..2421389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252865.1 CDS yfbK NC_016863.1 2421430 2423211 R putative von Willebrand factor; contains vWF type A domain; hypothetical protein complement(2421430..2423211) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252866.1 CDS nuoN NC_016863.1 2424099 2425376 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2424099..2425376) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252867.1 CDS nuoM NC_016863.1 2425563 2427092 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2425563..2427092) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252868.1 CDS nuoL NC_016863.1 2427406 2429247 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2427406..2429247) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252869.1 CDS nuoK NC_016863.1 2429244 2429546 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2429244..2429546) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252870.1 CDS nuoJ NC_016863.1 2429543 2430097 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2429543..2430097) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252871.1 CDS nuoI NC_016863.1 2430108 2430650 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2430108..2430650) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252872.1 CDS nuoH NC_016863.1 2430665 2431642 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2430665..2431642) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252873.1 CDS nuoG NC_016863.1 2431639 2434371 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2431639..2434371) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252874.1 CDS nuoF NC_016863.1 2434396 2435733 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(2434396..2435733) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252875.1 CDS nuoE NC_016863.1 2435730 2436230 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2435730..2436230) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252876.1 CDS nuoC NC_016863.1 2436233 2438035 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2436233..2438035) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252877.1 CDS nuoB NC_016863.1 2438122 2438784 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2438122..2438784) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252878.1 CDS nuoA NC_016863.1 2438800 2439243 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2438800..2439243) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252879.1 CDS STMUK_2359 NC_016863.1 2439638 2439790 R putative cytoplasmic protein complement(2439638..2439790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252880.1 CDS lrhA NC_016863.1 2439870 2440808 R similar to Escherichia coli NADH dehydrogenase transcriptional regulator; LysR family (AAC75349.1); NADH dehydrogenase transcriptional repressor complement(2439870..2440808) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252881.1 CDS yfbQ NC_016863.1 2441740 2442954 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2441740..2442954 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252882.1 CDS STMUK_2362 NC_016863.1 2443048 2443647 D similar to Escherichia coli putative alpha helix protein (AAC75351.1); HD superfamily; hypothetical protein 2443048..2443647 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252883.1 CDS yfbS NC_016863.1 2443739 2445565 R similar to Escherichia coli putative transport protein (AAC75352.1); putative response regulator complement(2443739..2445565) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252884.1 CDS yfbT NC_016863.1 2445642 2446319 R similar to Escherichia coli putative phosphatase (AAC75353.1); putative phosphatase complement(2445642..2446319) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252885.1 CDS yfbU NC_016863.1 2446312 2446806 R hypothetical protein complement(2446312..2446806) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252886.1 CDS STMUK_2366 NC_016863.1 2446889 2447344 R hypothetical protein complement(2446889..2447344) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252887.1 CDS ackA NC_016863.1 2447684 2448886 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2447684..2448886 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252888.1 CDS pta NC_016863.1 2448963 2451107 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2448963..2451107 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252889.1 CDS yfcC NC_016863.1 2451325 2452845 D similar to Escherichia coli putative S-transferase (AAC75358.1); hypothetical protein 2451325..2452845 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252890.1 CDS STMUK_2370 NC_016863.1 2452894 2453847 R similar to Escherichia coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); putative transketolase complement(2452894..2453847) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252891.1 CDS STMUK_2371 NC_016863.1 2453840 2454670 R similar to Escherichia coli transketolase 1 isozyme (AAC75972.1); putative transketolase complement(2453840..2454670) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252892.1 CDS sgaT NC_016863.1 2454667 2456058 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2454667..2456058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252893.1 CDS STMUK_2373 NC_016863.1 2456079 2456351 R putative cytoplasmic protein complement(2456079..2456351) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252894.1 CDS STMUK_2374 NC_016863.1 2456432 2456875 R similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); putative phosphotransferase system enzyme II A component complement(2456432..2456875) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252895.1 CDS STMUK_2375 NC_016863.1 2457128 2458147 D similar to Escherichia coli regulator of gluconate (gnt) operon (AAC76463.1); putative transcriptional regulator 2457128..2458147 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252896.1 CDS STMUK_2376 NC_016863.1 2458153 2458707 R similar to Escherichia coli putative regulator (AAC75359.1); putative NTP pyrophosphohydrolase complement(2458153..2458707) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252897.1 CDS yfcE NC_016863.1 2458764 2459315 R phosphodiesterase complement(2458764..2459315) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252898.1 CDS yfcF NC_016863.1 2459371 2460015 R putative glutathione S-transferase complement(2459371..2460015) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252899.1 CDS yfcG NC_016863.1 2460158 2460805 D similar to Escherichia coli putative S-transferase (AAC75362.1); putative glutathione S-transferase 2460158..2460805 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252900.1 CDS yfcH NC_016863.1 2460931 2461824 D similar to Escherichia coli putative sugar nucleotide epimerase (AAC75364.1); putative sugar nucleotide epimerase 2460931..2461824 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252901.1 CDS hisP NC_016863.1 2461876 2462652 R histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine/lysine/arginine/ornithine transporter subunit complement(2461876..2462652) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252902.1 CDS hisM NC_016863.1 2462663 2463370 R histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein complement(2462663..2463370) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252903.1 CDS hisQ NC_016863.1 2463367 2464053 R histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein complement(2463367..2464053) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252904.1 CDS hisJ NC_016863.1 2464236 2465018 R histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine transport protein complement(2464236..2465018) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252905.1 CDS argT NC_016863.1 2465256 2466038 R lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine transport protein complement(2465256..2466038) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252906.1 CDS ubiX NC_016863.1 2466327 2466896 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2466327..2466896) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252907.1 CDS STMUK_2387 NC_016863.1 2466923 2468329 R similar to Escherichia coli putative amino acid/amine transport protein (AAC73363.1); putative amino acid transporter complement(2466923..2468329) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252908.1 CDS STMUK_2388 NC_016863.1 2468393 2469496 R putative cytoplasmic protein complement(2468393..2469496) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252909.1 CDS STMUK_2389 NC_016863.1 2469498 2470919 R similar to Escherichia coli acid sensitivity protein, putative transporter (AAC74565.1); putative amino acid transporter complement(2469498..2470919) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252910.1 CDS STMUK_2390 NC_016863.1 2471010 2472407 R similar to Escherichia coli diaminopimelate decarboxylase (AAC75877.1); putative diaminopimelate decarboxylase complement(2471010..2472407) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252911.1 CDS STMUK_2391 NC_016863.1 2472618 2474045 D similar to Escherichia coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); putative regulatory protein 2472618..2474045 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252912.1 CDS purF NC_016863.1 2474081 2475598 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2474081..2475598) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252913.1 CDS cvpA NC_016863.1 2475636 2476124 R membrane protein required for colicin V production; colicin V noteion protein complement(2475636..2476124) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252914.1 CDS dedD NC_016863.1 2476435 2477109 R similar to Escherichia coli putative lipoprotein (AAC75374.1); hypothetical protein complement(2476435..2477109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252915.1 CDS folC NC_016863.1 2477099 2478367 R similar to Escherichia coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2477099..2478367) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252916.1 CDS accD NC_016863.1 2478435 2479349 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2478435..2479349) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252917.1 CDS dedA NC_016863.1 2479499 2480158 R putative DedA family; hypothetical protein complement(2479499..2480158) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252918.1 CDS hisT NC_016863.1 2480207 2481019 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2480207..2481019) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252919.1 CDS usg NC_016863.1 2481019 2482032 R similar to Escherichia coli putative PTS system enzyme II A component (AAC75379.1); putative semialdehyde dehydrogenase complement(2481019..2482032) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252920.1 CDS pdxB NC_016863.1 2482100 2483236 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(2482100..2483236) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252921.1 CDS flk NC_016863.1 2483340 2484341 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2483340..2484341 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252922.1 CDS STMUK_2402 NC_016863.1 2484338 2485516 R similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein complement(2484338..2485516) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252923.1 CDS STMUK_2403 NC_016863.1 2485696 2486070 R putative cytoplasmic protein complement(2485696..2486070) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252924.1 CDS STMUK_2404 NC_016863.1 2486243 2486491 D similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); helix-turn-helix; putative regulatory protein 2486243..2486491 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252925.1 CDS STMUK_2405 NC_016863.1 2486660 2487028 D putative cytoplasmic protein 2486660..2487028 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252926.1 CDS STMUK_2406 NC_016863.1 2487028 2487546 D hypothetical protein 2487028..2487546 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252927.1 CDS STMUK_2407 NC_016863.1 2487613 2488269 R putative inner membrane protein complement(2487613..2488269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252928.1 CDS fabB NC_016863.1 2488367 2489581 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2488367..2489581) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252929.1 CDS mnmC NC_016863.1 2489681 2491741 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2489681..2491741 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252930.1 CDS yfcL NC_016863.1 2491793 2492068 R putative cytoplasmic protein complement(2491793..2492068) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252931.1 CDS yfcM NC_016863.1 2492101 2492649 R similar to Escherichia coli putative transporting ATPase (AAC75386.1); putative cytoplasmic protein complement(2492101..2492649) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252932.1 CDS yfcA NC_016863.1 2492649 2493458 R similar to Escherichia coli putative structural protein (AAC75387.1); hypothetical protein complement(2492649..2493458) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252933.1 CDS mepA NC_016863.1 2493458 2494282 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(2493458..2494282) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252934.1 CDS aroC NC_016863.1 2494286 2495371 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2494286..2495371) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252935.1 CDS yfcB NC_016863.1 2495407 2496339 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2495407..2496339) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252936.1 CDS yfcN NC_016863.1 2496505 2497056 D contains putative Smr domain; hypothetical protein 2496505..2497056 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252937.1 CDS sixA NC_016863.1 2497156 2497641 R phosphohistidine phosphatase complement(2497156..2497641) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252938.1 CDS fadJ NC_016863.1 2497850 2499997 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase a; multifunctional fatty acid oxidation complex subunit alpha complement(2497850..2499997) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252939.1 CDS fadI NC_016863.1 2499997 2501307 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2499997..2501307) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252940.1 CDS yfcZ NC_016863.1 2501485 2501769 R putative cytoplasmic protein complement(2501485..2501769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252941.1 CDS fadL NC_016863.1 2502134 2503447 D similar to Escherichia coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); long-chain fatty acid outer membrane transporter 2502134..2503447 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252942.1 CDS vacJ NC_016863.1 2503508 2504263 R similar to Escherichia coli lipoprotein precursor (AAC75406.1); lipoprotein complement(2503508..2504263) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252943.1 CDS yfdC NC_016863.1 2504552 2505493 D similar to Escherichia coli putative transport (AAC75407.1); hypothetical protein 2504552..2505493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252944.1 CDS pgtE NC_016863.1 2505800 2506738 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves; outer membrane protease complement(2505800..2506738) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252945.1 CDS pgtA NC_016863.1 2507006 2508253 R phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; activator complement(2507006..2508253) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252946.1 CDS pgtB NC_016863.1 2508243 2510249 R protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein complement(2508243..2510249) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252947.1 CDS pgtC NC_016863.1 2510246 2511439 R protein for signal transmission; PgtC precursor (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein precursor complement(2510246..2511439) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252948.1 CDS pgtP NC_016863.1 2511875 2513266 D phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; transporter 2511875..2513266 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252949.1 CDS STMUK_2430 NC_016863.1 2513542 2513784 R putative inner membrane protein complement(2513542..2513784) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252950.1 CDS STMUK_2431 NC_016863.1 2513945 2514058 R similar to hypothetical protein SPC_1257 (Pid: YP_002636862.1).; hypothetical protein complement(2513945..2514058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252951.1 CDS ddg NC_016863.1 2514306 2515226 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2514306..2515226 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252952.1 CDS yfdZ NC_016863.1 2515750 2516988 R similar to Escherichia coli putative aminotransferase (AAC75438.1); aminotransferase complement(2515750..2516988) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252953.1 CDS glk NC_016863.1 2517709 2518674 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2517709..2518674) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252954.1 CDS STMUK_2435 NC_016863.1 2518878 2520113 D hypothetical protein 2518878..2520113 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252955.1 CDS STMUK_2436 NC_016863.1 2520133 2521785 R similar to Escherichia coli acetolactate synthase III; valine sensitive; large subunit (AAC73188.1); putative thiamine pyrophosphate enzymes; indolepyruvate decarboxylase complement(2520133..2521785) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252956.1 CDS STMUK_2437 NC_016863.1 2521965 2522963 D similar to Escherichia coli putative reductase (AAC76037.1); putative oxidoreductase 2521965..2522963 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252957.1 CDS ypeC NC_016863.1 2523077 2523403 D hypothetical protein 2523077..2523403 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252958.1 CDS mntH NC_016863.1 2523464 2524705 R manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; manganese transport protein MntH complement(2523464..2524705) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252959.1 CDS nupC NC_016863.1 2525048 2526250 D similar to Escherichia coli permease of transport system for 3 nucleosides (AAC75452.1); NUP family; nucleoside transport 2525048..2526250 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252960.1 CDS yfeA NC_016863.1 2526303 2528492 R putative diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein complement(2526303..2528492) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252961.1 CDS yfeC NC_016863.1 2529098 2529460 D putative negative regulator 2529098..2529460 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252962.1 CDS yfeD NC_016863.1 2529462 2529854 D putative negative regulator 2529462..2529854 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252963.1 CDS gltX NC_016863.1 2529908 2531323 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2529908..2531323) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252964.1 CDS xapR NC_016863.1 2532139 2533023 R similar to Escherichia coli regulator for xapA (AAC75458.1); LysR family; DNA-binding transcriptional activator XapR complement(2532139..2533023) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252965.1 CDS STMUK_2452 NC_016863.1 2533075 2533233 R similar to hypothetical protein STM2420.1n (Pid: NP_945166.1).; hypothetical protein complement(2533075..2533233) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252966.1 CDS xapB NC_016863.1 2533292 2534548 R similar to Escherichia coli xanthosine permease (AAC75459.1); MFS superfamily; xanthosine permease complement(2533292..2534548) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252967.1 CDS STMUK_2454 NC_016863.1 2534603 2535436 R similar to E. coli xanthosine phosphorylase(AAC75460.1); Blastp hit to AAC75460.1 (277 aa); xanthosine phosphorylase complement(2534603..2535436) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252968.1 CDS yfeN NC_016863.1 2535692 2536453 D similar to Escherichia coli putative sugar hydrolase (AAC75461.1); hypothetical protein 2535692..2536453 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252969.1 CDS yfeR NC_016863.1 2536515 2537441 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75462.1); LysR family; putative transcriptional regulator complement(2536515..2537441) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252970.1 CDS yfeH NC_016863.1 2537531 2538529 D similar to Escherichia coli putative cytochrome oxidase (AAC75463.1); putative Na+-dependent transporter 2537531..2538529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252971.1 CDS STMUK_2458 NC_016863.1 2538526 2538753 R putative cytoplasmic protein complement(2538526..2538753) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252972.1 CDS ligA NC_016863.1 2538746 2540761 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; NAD-dependent DNA ligase LigA complement(2538746..2540761) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252973.1 CDS zipA NC_016863.1 2540833 2541819 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2540833..2541819) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252974.1 CDS cysZ NC_016863.1 2542051 2542812 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 2542051..2542812 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252975.1 CDS cysK NC_016863.1 2542976 2543947 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2542976..2543947 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252976.1 CDS ptsH NC_016863.1 2544331 2544588 D phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2544331..2544588 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252977.1 CDS ptsI NC_016863.1 2544637 2546364 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport sy; phosphoenolpyruvate-protein phosphotransferase 2544637..2546364 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252978.1 CDS crr NC_016863.1 2546405 2546914 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2546405..2546914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252979.1 CDS STMUK_2466 NC_016863.1 2547063 2547302 R putative cytoplasmic protein complement(2547063..2547302) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252980.1 CDS pdxK NC_016863.1 2547299 2548165 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2547299..2548165) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252981.1 CDS ptsJ NC_016863.1 2548248 2549540 D putative transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; putative regulatory protein 2548248..2549540 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252982.1 CDS yfeJ NC_016863.1 2549555 2550274 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2549555..2550274 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252983.1 CDS yfeK NC_016863.1 2550333 2550713 D hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2550333..2550713 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252984.1 CDS yfeL NC_016863.1 2550726 2551265 D hypothetical 20.5 kDa protein in pdxK-cysM intergenic region (SW:YFEL_SALTY); penicillin-binding protein; putative membrane carboxypeptidase 2550726..2551265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252985.1 CDS cysM NC_016863.1 2551396 2552307 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2551396..2552307) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252986.1 CDS cysA NC_016863.1 2552375 2553472 R sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate transporter subunit complement(2552375..2553472) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252987.1 CDS cysW NC_016863.1 2553462 2554337 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit complement(2553462..2554337) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252988.1 CDS cysU NC_016863.1 2554337 2555170 R similar to Escherichia coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); ABC superfamily membrane protein; sulfate/thiosulfate transporter subunit complement(2554337..2555170) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252989.1 CDS cysP NC_016863.1 2555170 2556186 R thiosulfate-binding protein precursor (SW:CYSP_SALTY); ABC superfamily binding protein; thiosulfate transporter subunit complement(2555170..2556186) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252990.1 CDS ucpA NC_016863.1 2556344 2557135 R similar to Escherichia coli putative oxidoreductase (AAC75479.1); short chain dehydrogenase complement(2556344..2557135) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252991.1 CDS STMUK_2478 NC_016863.1 2557373 2558272 R putative iron-dependent peroxidase complement(2557373..2558272) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252992.1 CDS STMUK_2479 NC_016863.1 2558367 2558942 R hypothetical protein complement(2558367..2558942) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252993.1 CDS yfeZ NC_016863.1 2559004 2559453 R putative inner membrane protein complement(2559004..2559453) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252994.1 CDS STMUK_2481 NC_016863.1 2559440 2559976 R putative acetyltransferase complement(2559440..2559976) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252995.1 CDS amiA NC_016863.1 2560078 2560947 D probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2560078..2560947 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252996.1 CDS hemF NC_016863.1 2560950 2561849 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2560950..2561849 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252997.1 CDS STMUK_2484 NC_016863.1 2561870 2562199 D hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); putative inner membrane protein 2561870..2562199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252998.1 CDS STMUK_2485 NC_016863.1 2562328 2563605 D hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); putative cytoplasmic protein 2562328..2563605 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005252999.1 CDS eutR NC_016863.1 2563805 2564857 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(2563805..2564857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253000.1 CDS eutK NC_016863.1 2564905 2565399 R ethanolamine utilization protein EutK precursor (SW:EUTK_SALTY); putative carboxysome structural protein complement(2564905..2565399) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253001.1 CDS eutL NC_016863.1 2565412 2566071 R ethanolamine utilization protein EutL (SW:EUTL_SALTY); putative carboxysome structural protein complement(2565412..2566071) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253002.1 CDS eutC NC_016863.1 2566081 2566977 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(2566081..2566977) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253003.1 CDS eutB NC_016863.1 2566996 2568357 R ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase heavy chain complement(2566996..2568357) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253004.1 CDS eutA NC_016863.1 2568369 2569772 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(2568369..2569772) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253005.1 CDS eutH NC_016863.1 2569769 2570995 R ethanolamine utilization protein EutH (SW:EUTH_SALTY); putative transport protein complement(2569769..2570995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253006.1 CDS eutG NC_016863.1 2571115 2572302 R ethanolamine utilization protein EutG (SW:EUTG_SALTY); putative transport protein complement(2571115..2572302) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253007.1 CDS eutJ NC_016863.1 2572292 2573131 R EutJ (SW:EUTJ_SALTY); putative heatshock protein 70; ethanolamine utilization protein complement(2572292..2573131) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253008.1 CDS eutE NC_016863.1 2573142 2574545 R invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); putative aldehyde oxidoreductase complement(2573142..2574545) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253009.1 CDS eutN NC_016863.1 2574557 2574856 R involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); putative detox protein complement(2574557..2574856) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253010.1 CDS eutM NC_016863.1 2574957 2575247 R involved in ethanolamine utilization protein EutM precursor (SW:EUTM_SALTY); putative detox protein complement(2574957..2575247) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253011.1 CDS eutD NC_016863.1 2575288 2576304 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2575288..2576304) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253012.1 CDS eutT NC_016863.1 2576301 2577104 R ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); putative cobalamin adenosyltransferase complement(2576301..2577104) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253013.1 CDS eutQ NC_016863.1 2577101 2577790 R ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); putative ethanolamine utilization protein complement(2577101..2577790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253014.1 CDS eutP NC_016863.1 2577768 2578247 R ethanolamine utilization protein EutP (SW:EUTP_SALTY); putative ethanolamine utilization protein complement(2577768..2578247) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253015.1 CDS eutS NC_016863.1 2578260 2578595 R ethanolamine utilization protein EutS (SW:EUTS_SALTY); putative carboxysome structural protein complement(2578260..2578595) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253016.1 CDS tnpA_6 NC_016863.1 2579076 2579534 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(2579076..2579534) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253017.1 CDS maeB NC_016863.1 2579724 2582003 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2579724..2582003) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253018.1 CDS talA NC_016863.1 2582275 2583225 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2582275..2583225 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253019.1 CDS tktB NC_016863.1 2583245 2585245 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo; transketolase 2583245..2585245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253020.1 CDS STMUK_2507 NC_016863.1 2585308 2585538 R putative cytoplasmic protein complement(2585308..2585538) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253021.1 CDS ypfG NC_016863.1 2585666 2586709 R hypothetical protein complement(2585666..2586709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253022.1 CDS yffH NC_016863.1 2586834 2587409 R putative pyrophosphohydrolase complement(2586834..2587409) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253023.1 CDS STMUK_2510 NC_016863.1 2587613 2588911 D similar to Escherichia coli putative beta-lactamase (AAC75483.1); hypothetical protein 2587613..2588911 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253024.1 CDS aegA NC_016863.1 2589360 2591321 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit complement(2589360..2591321) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253025.1 CDS narQ NC_016863.1 2591507 2593207 D similar to Escherichia coli sensor for nitrate reductase system; protein histidine kinase; acts on NarP and narL (AAC75522.1); in two-component regulatory system; nitrate/nitrite sensor protein NarQ 2591507..2593207 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253026.1 CDS acrD NC_016863.1 2593392 2596505 D similar to Escherichia coli protein that results in sensitivity to acriflavine; integral membrane protein; possible efflux pump (AAC75523.1); RND family; aminoglycoside/multidrug efflux system 2593392..2596505 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253027.1 CDS yffB NC_016863.1 2597079 2597435 D hypothetical protein 2597079..2597435 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253028.1 CDS dapE NC_016863.1 2597439 2598566 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is simi; succinyl-diaminopimelate desuccinylase 2597439..2598566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253029.1 CDS STMUK_2516 NC_016863.1 2598594 2598794 D hypothetical protein 2598594..2598794 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253030.1 CDS ypfI NC_016863.1 2598821 2600839 R putative acetyltransferase complement(2598821..2600839) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253031.1 CDS STMUK_2518 NC_016863.1 2600855 2601718 R putative inner membrane protein complement(2600855..2601718) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253032.1 CDS purC NC_016863.1 2601849 2602562 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2601849..2602562) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253033.1 CDS nlpB NC_016863.1 2602737 2603771 R similar to Escherichia coli lipoprotein-34 (AAC75530.1); lipoprotein complement(2602737..2603771) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253034.1 CDS dapA NC_016863.1 2603788 2604666 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2603788..2604666) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253035.1 CDS gcvR NC_016863.1 2604746 2605384 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2604746..2605384 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253036.1 CDS bcp NC_016863.1 2605384 2605854 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2605384..2605854 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253037.1 CDS STMUK_2524 NC_016863.1 2605901 2606254 R putative glycerate kinase complement(2605901..2606254) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253038.1 CDS perM NC_016863.1 2606441 2607508 R similar to Escherichia coli putative permease (AAC75546.1); PerM family; putative permease complement(2606441..2607508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253039.1 CDS STMUK_2526 NC_016863.1 2607716 2609179 D putative inner membrane or exported protein; hypothetical protein 2607716..2609179 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253040.1 CDS yfgD NC_016863.1 2609219 2609578 D similar to Escherichia coli putative oxidoreductase (AAC75548.1); putative arsenate reductase 2609219..2609578 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253041.1 CDS yfgE NC_016863.1 2609605 2610330 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2609605..2610330) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253042.1 CDS uraA NC_016863.1 2610401 2611690 R similar to Escherichia coli uracil transport (AAC75550.1); NCS2 family; uracil transporter complement(2610401..2611690) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253043.1 CDS upp NC_016863.1 2611778 2612404 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2611778..2612404) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253044.1 CDS purM NC_016863.1 2612818 2613855 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2612818..2613855 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253045.1 CDS purN NC_016863.1 2613855 2614493 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses format; phosphoribosylglycinamide formyltransferase 2613855..2614493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253046.1 CDS ppk NC_016863.1 2614682 2616748 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2614682..2616748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253047.1 CDS ppx NC_016863.1 2616753 2618294 D similar to Escherichia coli exopolyphosphatase (AAC75555.1); exopolyphosphatase 2616753..2618294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253048.1 CDS STMUK_2535 NC_016863.1 2618330 2620543 R similar to Escherichia coli putative cytochrome C-type biogenesis protein (AAC75556.1); putative diguanylate cyclase complement(2618330..2620543) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253049.1 CDS STMUK_2536 NC_016863.1 2620640 2620777 R putative cytoplasmic protein complement(2620640..2620777) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253050.1 CDS STMUK_2537 NC_016863.1 2620848 2621108 R putative inner membrane protein complement(2620848..2621108) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253051.1 CDS STMUK_2538 NC_016863.1 2620956 2621147 D putative inner membrane protein 2620956..2621147 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253052.1 CDS STMUK_2539 NC_016863.1 2621226 2621462 R putative inner membrane protein complement(2621226..2621462) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253053.1 CDS STMUK_2540 NC_016863.1 2621688 2622017 D similar to STM2011 and STM2902; putative cytoplasmic protein 2621688..2622017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253054.1 CDS STMUK_2541 NC_016863.1 2622037 2622393 R similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase complement(2622037..2622393) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253055.1 CDS guaA NC_016863.1 2622550 2624127 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2622550..2624127) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253056.1 CDS guaB NC_016863.1 2624197 2625663 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2624197..2625663) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253057.1 CDS xseA NC_016863.1 2625824 2627173 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2625824..2627173 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253058.1 CDS shdA NC_016863.1 2627335 2633454 R ShdA (gi|5107805); similar to the C-terminal region of AIDA; IcsA; subspecies I-specific; Peyer's patch colonization and shedding factor; AIDA autotransporter-like protein complement(2627335..2633454) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253059.1 CDS ratA NC_016863.1 2641620 2647217 R RatA (gi|4583529); putative outer membrane protein complement(2641620..2647217) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253060.1 CDS sinI NC_016863.1 2647337 2648296 R SinI (gi|4583530); putative outer membrane protein complement(2647337..2648296) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253061.1 CDS sinH NC_016863.1 2648354 2650546 R SinH (gi|4583531); similar to Escherichia coli intimin and Yersinia pestis invasin proteins; intimin-like protein complement(2648354..2650546) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253062.1 CDS yfgJ NC_016863.1 2650892 2651113 R putative cytoplasmic protein complement(2650892..2651113) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253063.1 CDS engA NC_016863.1 2651202 2652674 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows differen; GTP-binding protein EngA complement(2651202..2652674) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253064.1 CDS yfgL NC_016863.1 2652793 2653971 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(2652793..2653971) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253065.1 CDS yfgM NC_016863.1 2653982 2654602 R putative inner membrane protein complement(2653982..2654602) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253066.1 CDS hisS NC_016863.1 2654616 2655890 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organis; histidyl-tRNA synthetase complement(2654616..2655890) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253067.1 CDS gcpE NC_016863.1 2656001 2657119 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2656001..2657119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253068.1 CDS yfgA NC_016863.1 2657146 2658150 R similar to Escherichia coli putative membrane protein (AAC75569.1); cytoskeletal protein RodZ complement(2657146..2658150) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253069.1 CDS yfgB NC_016863.1 2658442 2659608 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2658442..2659608) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253070.1 CDS ndk NC_016863.1 2659815 2660246 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2659815..2660246) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253071.1 CDS STMUK_2559 NC_016863.1 2660367 2661230 R similar to Escherichia coli hydrogenase 4 Fe-S subunit (AAC75541.1); putative polyferredoxin complement(2660367..2661230) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253072.1 CDS STMUK_2560 NC_016863.1 2661230 2662039 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); putative dimethylsulfoxide reductase complement(2661230..2662039) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253073.1 CDS STMUK_2561 NC_016863.1 2662032 2662661 R similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase complement(2662032..2662661) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253074.1 CDS STMUK_2562 NC_016863.1 2662658 2665081 R similar to Escherichia coli putative oxidoreductase, major subunit (AAC74660.1); putative anaerobic dimethylsulfoxide reductase complement(2662658..2665081) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253075.1 CDS pbpC NC_016863.1 2665210 2667525 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(2665210..2667525) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253076.1 CDS STMUK_2564 NC_016863.1 2667526 2672460 R putative inner membrane lipoprotein complement(2667526..2672460) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253077.1 CDS sseA NC_016863.1 2672669 2673511 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2672669..2673511 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253078.1 CDS STMUK_2566 NC_016863.1 2673758 2674426 D putative cytoplasmic protein 2673758..2674426 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253079.1 CDS sseB NC_016863.1 2674995 2675780 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2674995..2675780) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253080.1 CDS pepB NC_016863.1 2675881 2677164 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(2675881..2677164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253081.1 CDS yfhJ NC_016863.1 2677411 2677611 R believed to be involved in assembly of Fe-S clusters; hypothetical protein complement(2677411..2677611) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253082.1 CDS fdx NC_016863.1 2677623 2677958 R similar to Escherichia coli 2FE-2S ferredoxin, electron carrer protein (AAC75578.1); believed to be involved in assembly of Fe-S clusters; electron carrer protein complement(2677623..2677958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253083.1 CDS hscA NC_016863.1 2677960 2679810 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2677960..2679810) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253084.1 CDS hscB NC_016863.1 2679823 2680338 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2679823..2680338) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253085.1 CDS iscA NC_016863.1 2680534 2680857 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(2680534..2680857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253086.1 CDS nifU NC_016863.1 2680886 2681272 R similar to NifU; involved in Fe-S cluster formation; scaffold protein complement(2680886..2681272) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253087.1 CDS nifS NC_016863.1 2681300 2682514 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2681300..2682514) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253088.1 CDS yfhP NC_016863.1 2682695 2683189 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(2682695..2683189) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253089.1 CDS STMUK_2577 NC_016863.1 2683349 2684080 R similar to Escherichia coli putative ATP synthase beta subunit (AAC75585.1); putative rRNA methylase complement(2683349..2684080) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253090.1 CDS suhB NC_016863.1 2684199 2685002 D similar to Escherichia coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); inositol monophosphatase 2684199..2685002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253091.1 CDS STMUK_2579 NC_016863.1 2685147 2686025 D similar to Escherichia coli putative enzyme (AAC75587.1); putative hydrolase 2685147..2686025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253092.1 CDS asrA NC_016863.1 2686207 2687250 D anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfide reductase 2686207..2687250 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253093.1 CDS asrB NC_016863.1 2687254 2688072 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2687254..2688072 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253094.1 CDS asrC NC_016863.1 2688083 2689096 D anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfide reductase 2688083..2689096 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253095.1 CDS STMUK_2583 NC_016863.1 2689097 2690083 R putative inner membrane protein complement(2689097..2690083) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253096.1 CDS STMUK_2584 NC_016863.1 2690074 2690712 R putative periplasmic protein; hypothetical protein complement(2690074..2690712) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253097.1 CDS csiE NC_016863.1 2690838 2692115 D stationary phase inducible protein CsiE 2690838..2692115 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253098.1 CDS hcaT NC_016863.1 2692110 2693249 R putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter complement(2692110..2693249) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253099.1 CDS glyA NC_016863.1 2693445 2694698 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2693445..2694698) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253100.1 CDS hmpA NC_016863.1 2695023 2696213 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2695023..2696213 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253101.1 CDS cadC NC_016863.1 2696395 2697939 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2696395..2697939 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253102.1 CDS cadB NC_016863.1 2698300 2699631 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2698300..2699631 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253103.1 CDS cadA NC_016863.1 2699714 2701858 D lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2699714..2701858 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253104.1 CDS yjdL NC_016863.1 2701914 2703374 D similar to Escherichia coli putative peptide transporter (AAC77091.1); POT family; putative di-/tripeptide transport protein 2701914..2703374 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253105.1 CDS glnB NC_016863.1 2703423 2703761 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts w; nitrogen regulatory protein P-II 1 complement(2703423..2703761) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253106.1 CDS yfhA NC_016863.1 2703838 2705175 R similar to Escherichia coli putative 2-component transcriptional regulator (AAC75607.1); regulator of two-component regulator protein; EBP family; putative transcriptional regulator complement(2703838..2705175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253107.1 CDS yfhG NC_016863.1 2705172 2705936 R similar to Escherichia coli putative alpha helix protein (AAC75608.1); regulator of two-component regulator protein; EBP familiiy; hypothetical protein complement(2705172..2705936) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253108.1 CDS yfhK NC_016863.1 2705938 2707380 R similar to Escherichia coli putative 2-component sensor protein (AAC75609.1); regulatory protein; putative sensor kinase complement(2705938..2707380) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253109.1 CDS purG NC_016863.1 2708018 2711905 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2708018..2711905) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253110.1 CDS STMUK_2598 NC_016863.1 2711927 2712160 D hypothetical protein 2711927..2712160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253111.1 CDS yfhD NC_016863.1 2712161 2713705 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2712161..2713705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253112.1 CDS yfhC NC_016863.1 2713756 2714307 R similar to Escherichia coli putative deaminase (AAC75612.1); tRNA-specific adenosine deaminase complement(2713756..2714307) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253113.1 CDS yfhB NC_016863.1 2714332 2714967 R hypothetical protein complement(2714332..2714967) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253114.1 CDS STMUK_2602 NC_016863.1 2714971 2716332 R similar to Escherichia coli putative PTS enzyme II (AAC75482.1); putative phosphotransferase system IIB component complement(2714971..2716332) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253115.1 CDS yfeU NC_016863.1 2716343 2717236 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2716343..2717236) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253116.1 CDS yfhH NC_016863.1 2717352 2718200 D putative ABC superfamily membrane protein; putative DNA-binding transcriptional regulator 2717352..2718200 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253117.1 CDS STMUK_2605 NC_016863.1 2718239 2719156 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(2718239..2719156) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253118.1 CDS STMUK_2606 NC_016863.1 2719178 2720374 R similar to Escherichia coli putative resistance protein (AAC76571.1); putative permease complement(2719178..2720374) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253119.1 CDS STMUK_2607 NC_016863.1 2720490 2721416 D similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; putative transcriptional regulator 2720490..2721416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253120.1 CDS yfhL NC_016863.1 2721454 2721714 D putative ferredoxin 2721454..2721714 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253121.1 CDS acpS NC_016863.1 2721826 2722206 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2721826..2722206) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253122.1 CDS pdxJ NC_016863.1 2722206 2722937 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2722206..2722937) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253123.1 CDS recO NC_016863.1 2722949 2723677 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2722949..2723677) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253124.1 CDS era NC_016863.1 2723689 2724594 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested du; GTP-binding protein Era complement(2723689..2724594) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253125.1 CDS rnc NC_016863.1 2724591 2725271 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2724591..2725271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253126.1 CDS lepB NC_016863.1 2725545 2726519 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2725545..2726519) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253127.1 CDS lepA NC_016863.1 2726536 2728335 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2726536..2728335) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253128.1 CDS gogB NC_016863.1 2728740 2730233 D leucine-rich repeat protein; hypothetical protein 2728740..2730233 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253129.1 CDS STMUK_2617 NC_016863.1 2731090 2731635 D similar to transposase; transposase-like protein 2731090..2731635 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253130.1 CDS STMUK_2618 NC_016863.1 2732747 2732974 D similar to pagK; PagK-like protein 2732747..2732974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253131.1 CDS STMUK_2619 NC_016863.1 2733071 2733649 R phage tail assembly protein (gi|2460256); phage tail assembly-like protein complement(2733071..2733649) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253132.1 CDS STMUK_2620 NC_016863.1 2733639 2734463 R phage tail assembly protein (gi|2460256); phage tail assembly-like protein complement(2733639..2734463) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253133.1 CDS STMUK_2621 NC_016863.1 2734460 2736832 R similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber-like protein complement(2734460..2736832) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253134.1 CDS STMUK_2622 NC_016863.1 2736886 2737128 R similar to hypothetical protein SNSL254_A2795 (Pid: YP_002041853.1).; hypothetical protein complement(2736886..2737128) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253135.1 CDS STMUK_2623 NC_016863.1 2737167 2740529 R similar to host specificity protein-J in phage lambda; host specificity protein-J-like protein complement(2737167..2740529) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253136.1 CDS STMUK_2624 NC_016863.1 2740591 2741238 R similar to tail assembly protein I in phage lambda; tail assembly protein I-like protein complement(2740591..2741238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253137.1 CDS STMUK_2625 NC_016863.1 2741136 2741735 R similar to tail assembly protein K in phage lambda; tail assembly protein K-like protein complement(2741136..2741735) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253138.1 CDS STMUK_2626 NC_016863.1 2741880 2742578 R similar to phage tail component L; phage tail component L-like protein complement(2741880..2742578) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253139.1 CDS STMUK_2627 NC_016863.1 2742588 2742917 R similar to lambda phage M tail component (gi|2232363); phage tail component M-like protein complement(2742588..2742917) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253140.1 CDS STMUK_2628 NC_016863.1 2742920 2746015 R similar to lambda phage tail component H (gi|2232364); phage tail component H-like protein complement(2742920..2746015) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253141.1 CDS STMUK_2629 NC_016863.1 2745987 2746325 R similar to minor tail protein; minor tail-like protein complement(2745987..2746325) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253142.1 CDS STMUK_2630 NC_016863.1 2746322 2746717 R similar to minor tail protein; minor tail-like protein complement(2746322..2746717) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253143.1 CDS STMUK_2631 NC_016863.1 2746768 2747514 R similar to major tail protein; major tail-like protein complement(2746768..2747514) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253144.1 CDS STMUK_2632 NC_016863.1 2747522 2747923 R hypothetical protein complement(2747522..2747923) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253145.1 CDS STMUK_2633 NC_016863.1 2747912 2749162 D similar to Escherichia coli putative virulence protein (AAC74514.1); putative virulence protein 2747912..2749162 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253146.1 CDS STMUK_2634 NC_016863.1 2749211 2749789 R similar to minor tail protein Z; minor tail protein Z-like protein complement(2749211..2749789) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253147.1 CDS STMUK_2635 NC_016863.1 2749817 2750200 R similar to minor capsid protein FII of phage N15; minor capsid protein FII complement(2749817..2750200) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253148.1 CDS STMUK_2636 NC_016863.1 2750211 2750570 R similar to DNA packaging protein gp9 of phage N14; DNA packaging-like protein complement(2750211..2750570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253149.1 CDS STMUK_2637 NC_016863.1 2750628 2751656 R similar to head protein gp7 of phage 21; phage head-like protein complement(2750628..2751656) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253150.1 CDS STMUK_2638 NC_016863.1 2751711 2752058 R similar to head protein gpshp of phage 21; phage head-like protein complement(2751711..2752058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253151.1 CDS STMUK_2639 NC_016863.1 2752071 2753567 R similar to head-tail preconnector gp5 of phage 21; similar to Escherichia coli putative protease (AAC74354.1); head-tail preconnector-like protein complement(2752071..2753567) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253152.1 CDS STMUK_2640 NC_016863.1 2753557 2755137 R similar to head-tail preconnector gp4 of phage 21; head-tail preconnector-like protein complement(2753557..2755137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253153.1 CDS STMUK_2641 NC_016863.1 2755134 2755337 R similar to head to tail joining protein; head-to-tail joining-like protein complement(2755134..2755337) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253154.1 CDS STMUK_2642 NC_016863.1 2755321 2757252 R similar to terminase large chain gp2 of N15; terminase-like large protein complement(2755321..2757252) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253155.1 CDS STMUK_2643 NC_016863.1 2757224 2757769 R similar to DNA packaging protein Nu1 of phage 21; similar to Qin prophage packaging protein NU1 (AAC74621.1); DNA packaging-like protein complement(2757224..2757769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253156.1 CDS STMUK_2644 NC_016863.1 2758056 2758457 D hypothetical protein 2758056..2758457 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253157.1 CDS STMUK_2645 NC_016863.1 2758693 2759166 R similar to Escherichia coli bacteriophage lambda endopeptidase (AAC73657.1); endopeptidase-like protein complement(2758693..2759166) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253158.1 CDS STMUK_2646 NC_016863.1 2759163 2759615 R similar to morphogenesis protein of phage B103; similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); morphogenesis-like protein complement(2759163..2759615) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253159.1 CDS STMUK_2647 NC_016863.1 2759599 2759928 R hypothetical protein complement(2759599..2759928) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253160.1 CDS STMUK_2648 NC_016863.1 2760204 2760890 D hypothetical protein 2760204..2760890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253161.1 CDS STMUK_2649 NC_016863.1 2761105 2761293 R similar to hypothetical protein SNSL254_A2822 (Pid: YP_002041879.1).; hypothetical protein complement(2761105..2761293) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253162.1 CDS STMUK_2651 NC_016863.1 2761800 2762363 R similar to antirepressor protein of phage P22; antirepressor-like protein complement(2761800..2762363) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253163.1 CDS STMUK_2652 NC_016863.1 2762636 2763313 R similar to antiterminator Q; antiterminator-like protein complement(2762636..2763313) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253164.1 CDS STMUK_2653 NC_016863.1 2763310 2763450 R hypothetical protein complement(2763310..2763450) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253165.1 CDS STMUK_2654 NC_016863.1 2763447 2764058 R hypothetical protein complement(2763447..2764058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253166.1 CDS STMUK_2655 NC_016863.1 2764267 2764869 R hypothetical protein complement(2764267..2764869) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253167.1 CDS STMUK_2656 NC_016863.1 2765269 2765502 R hypothetical protein complement(2765269..2765502) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253168.1 CDS STMUK_2657 NC_016863.1 2765772 2766764 D similar to T3SS effector protein NleC (Pid: YP_003365223.1).; hypothetical protein 2765772..2766764 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253169.1 CDS STMUK_2658 NC_016863.1 2766791 2767309 R hypothetical protein complement(2766791..2767309) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253170.1 CDS STMUK_2659 NC_016863.1 2767306 2767653 R hypothetical protein complement(2767306..2767653) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253171.1 CDS STMUK_2660 NC_016863.1 2767664 2768413 R acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein complement(2767664..2768413) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253172.1 CDS STMUK_2661 NC_016863.1 2768416 2769435 R similar to replication protein 15 (gi|7467283); replication protein 15-like protein complement(2768416..2769435) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253173.1 CDS STMUK_2662 NC_016863.1 2769589 2769909 R similar to cI protein in phage N; probable regulatory protein (gi|7467282); cI-like protein complement(2769589..2769909) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253174.1 CDS STMUK_2663 NC_016863.1 2770238 2770651 D similar to hypothetical protein CKO_01905 (Pid: YP_001453468.1).; hypothetical protein 2770238..2770651 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253175.1 CDS STMUK_2664 NC_016863.1 2770794 2771903 D similar to regulatory protein CII (Pid: YP_003297469.1).; hypothetical protein 2770794..2771903 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253176.1 CDS STMUK_2666 NC_016863.1 2772384 2772542 D hypothetical protein 2772384..2772542 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253177.1 CDS STMUK_2667 NC_016863.1 2772564 2772914 D hypothetical protein 2772564..2772914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253178.1 CDS STMUK_2668 NC_016863.1 2773041 2775968 D similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease VIII-like protein 2773041..2775968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253179.1 CDS STMUK_2669 NC_016863.1 2775979 2777088 D similar to enterohemolysin 1 in Escherichia coli; hypothetical protein AAC26069.1 (gi|7467267); enterohemolysin 1-like protein 2775979..2777088 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253180.1 CDS STMUK_2670 NC_016863.1 2777131 2777370 D putative cytoplasmic protein 2777131..2777370 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253181.1 CDS STMUK_2671 NC_016863.1 2777411 2777695 D similar to excisionase in phage phi-80; probable excisionase (gi|7467278); excisionase-like protein 2777411..2777695 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253182.1 CDS STMUK_2672 NC_016863.1 2777673 2778902 R similar to integrase in phage (gi|7467280); integrase-like protein complement(2777673..2778902) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253183.1 CDS rseC NC_016863.1 2779400 2779879 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2779400..2779879) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253184.1 CDS rseB NC_016863.1 2779876 2780832 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2779876..2780832) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253185.1 CDS rseA NC_016863.1 2780832 2781482 R similar to Escherichia coli anti sigma-E/sigma 24 factor; negative regulatory protein (AAC75625.1); anti-RNA polymerase sigma factor SigE complement(2780832..2781482) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253186.1 CDS rpoE NC_016863.1 2781514 2782089 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate; RNA polymerase sigma factor RpoE complement(2781514..2782089) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253187.1 CDS nadB NC_016863.1 2782514 2784136 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2782514..2784136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253188.1 CDS yfiC NC_016863.1 2784121 2784858 R similar to Escherichia coli putative enzyme (AAC75628.1); putative transferase complement(2784121..2784858) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253189.1 CDS srmB NC_016863.1 2784989 2786323 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2784989..2786323 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253190.1 CDS yfiE NC_016863.1 2786341 2787240 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75630.1); LysR family; putative transcriptional regulator complement(2786341..2787240) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253191.1 CDS yfiK NC_016863.1 2787343 2787930 D neutral amino-acid efflux protein 2787343..2787930 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253192.1 CDS yfiD NC_016863.1 2787992 2788375 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(2787992..2788375) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253193.1 CDS ung NC_016863.1 2788694 2789383 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2788694..2789383 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253194.1 CDS yfiF NC_016863.1 2789499 2790536 R putative methyltransferase complement(2789499..2790536) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253195.1 CDS trxC NC_016863.1 2790740 2791159 D similar to Escherichia coli putative thioredoxin-like protein (AAC75635.1); redox factor; thioredoxin 2 2790740..2791159 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253196.1 CDS yfiP NC_016863.1 2791232 2791912 D putative cytoplasmic protein 2791232..2791912 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253197.1 CDS yfiQ NC_016863.1 2791966 2794626 D putative acetyl-CoA synthetase 2791966..2794626 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253198.1 CDS pssA NC_016863.1 2794741 2796096 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2794741..2796096 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253199.1 CDS yfiM NC_016863.1 2796141 2796464 D hypothetical protein 2796141..2796464 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253200.1 CDS kgtP NC_016863.1 2796461 2797762 R similar to Escherichia coli alpha-ketoglutarate permease (AAC75640.1); MFS family; alpha-ketoglutarate transporter complement(2796461..2797762) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253201.1 CDS STMUK_2691 NC_016863.1 2797866 2798321 R putative cytoplasmic protein complement(2797866..2798321) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253202.1 CDS clpB NC_016863.1 2804286 2806859 R similar to Escherichia coli heat shock protein (AAC75641.1); Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; protein disaggregation chaperone complement(2804286..2806859) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253203.1 CDS yfiH NC_016863.1 2806989 2807720 R hypothetical protein complement(2806989..2807720) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253204.1 CDS rluD NC_016863.1 2807717 2808697 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(2807717..2808697) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253205.1 CDS yfiO NC_016863.1 2808829 2809566 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2808829..2809566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253206.1 CDS yfiA NC_016863.1 2809838 2810176 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2809838..2810176 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253207.1 CDS STMUK_2701 NC_016863.1 2810280 2810327 D hypothetical protein 2810280..2810327 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253208.1 CDS pheA NC_016863.1 2810427 2811587 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2810427..2811587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253209.1 CDS STMUK_2703 NC_016863.1 2811548 2812456 R putative cytoplasmic protein complement(2811548..2812456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253210.1 CDS tyrA NC_016863.1 2812514 2813635 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2812514..2813635) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253211.1 CDS aroF NC_016863.1 2813645 2814715 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2813645..2814715) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253212.1 CDS yfiR NC_016863.1 2815155 2815673 D hypothetical protein 2815155..2815673 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253213.1 CDS yfiN NC_016863.1 2815666 2816886 D hypothetical protein 2815666..2816886 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253214.1 CDS rplS NC_016863.1 2817043 2817390 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2817043..2817390) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253215.1 CDS trmD NC_016863.1 2817431 2818198 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2817431..2818198) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253216.1 CDS rimM NC_016863.1 2818243 2818791 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2818243..2818791) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253217.1 CDS rpsP NC_016863.1 2818810 2819058 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2818810..2819058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253218.1 CDS ffh NC_016863.1 2819372 2820733 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2819372..2820733) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253219.1 CDS corE NC_016863.1 2820899 2821690 D CorE (gi|4877800); putative cytochrome c-type biogenesis protein; heme exporter protein C; hypothetical protein 2820899..2821690 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253220.1 CDS yfjD NC_016863.1 2821755 2822996 D similar to Escherichia coli putative transport protein (AAC75662.1); hypothetical protein 2821755..2822996 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253221.1 CDS STMUK_2715 NC_016863.1 2823117 2823722 D putative cytoplasmic protein 2823117..2823722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253224.1 CDS ppnK NC_016863.1 2824470 2825348 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2824470..2825348 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253225.1 CDS recN NC_016863.1 2825434 2827095 D similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1); recombination and repair protein 2825434..2827095 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253226.1 CDS smpA NC_016863.1 2827244 2827582 D similar to Escherichia coli small membrane protein A (AAC75666.1); hypothetical protein 2827244..2827582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253227.1 CDS yfjF NC_016863.1 2827748 2828038 R hypothetical protein complement(2827748..2828038) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253228.1 CDS yfjG NC_016863.1 2828028 2828504 R lipid transport protein; hypothetical protein complement(2828028..2828504) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253229.1 CDS smpB NC_016863.1 2828654 2829136 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca; SsrA-binding protein 2828654..2829136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253230.1 CDS STMUK_2724 NC_016863.1 2829750 2841224 D similar to large repetitive protein (Pid: YP_002143218.1).; hypothetical protein 2829750..2841224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253231.1 CDS STMUK_2725 NC_016863.1 2841289 2842698 D similar to Escherichia coli putative resistance protein (AAC73673.1); putative outer membrane efflux protein 2841289..2842698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253232.1 CDS STMUK_2726 NC_016863.1 2842695 2844875 D similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter transmembrane region 2842695..2844875 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253233.1 CDS STMUK_2727 NC_016863.1 2844883 2846046 D HlyD family secretion protein 2844883..2846046 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253234.1 CDS STMUK_2728 NC_016863.1 2846647 2847711 D similar to Escherichia coli prophage CP4-57 integrase (AAC75670.1); integrase-like protein 2846647..2847711 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253235.1 CDS STMUK_2729 NC_016863.1 2847939 2848532 D hypothetical protein 2847939..2848532 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253236.1 CDS STMUK_2730 NC_016863.1 2848922 2850115 D putative cytoplasmic protein 2848922..2850115 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253237.1 CDS STMUK_2731 NC_016863.1 2850450 2851277 R putative cytoplasmic protein complement(2850450..2851277) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253238.1 CDS STMUK_2732 NC_016863.1 2851728 2851943 D putative cytoplasmic protein 2851728..2851943 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253239.1 CDS STMUK_2733 NC_016863.1 2851979 2854048 D putative inner membrane protein 2851979..2854048 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253240.1 CDS STMUK_2734 NC_016863.1 2854551 2855834 D excinuclease; putative ATPase 2854551..2855834 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253241.1 CDS STMUK_2735 NC_016863.1 2855879 2856697 D putative cytoplasmic protein 2855879..2856697 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253242.1 CDS STMUK_2736 NC_016863.1 2856851 2857207 R putative transcriptional regulator complement(2856851..2857207) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253243.1 CDS STMUK_2737 NC_016863.1 2857302 2857586 D similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); putative cytoplasmic protein 2857302..2857586 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253244.1 CDS STMUK_2738 NC_016863.1 2857699 2858220 D similar to Escherichia coli PTS system glucitol/sorbitol-specific IIC component; one of two (AAC75744.1); putative PTS system glucitol/sorbitol-specific enzyme II 2857699..2858220 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253245.1 CDS STMUK_2739 NC_016863.1 2858217 2858591 D similar to Escherichia coli PTS system glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); putative glucitol-specific PTS enzyme III 2858217..2858591 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253246.1 CDS STMUK_2740 NC_016863.1 2858588 2859568 D similar to Escherichia coli PTS system glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); putative glucitol-specific PTS enzyme III 2858588..2859568 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253247.1 CDS STMUK_2741 NC_016863.1 2859579 2860592 D similar to Escherichia coli putative dehydrogenase (AAC74397.1); putative dehydrogenase 2859579..2860592 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253248.1 CDS STMUK_2742 NC_016863.1 2860887 2862089 D putative hexulose 6 phosphate synthase 2860887..2862089 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253249.1 CDS STMUK_2743 NC_016863.1 2862163 2862798 R similar to Escherichia coli probable hexulose-6-phosphate synthase (AAC77153.1); putative hexulose 6 phosphate synthase complement(2862163..2862798) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253250.1 CDS STMUK_2744 NC_016863.1 2862822 2863385 R putative sugar phosphate aminotransferase complement(2862822..2863385) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253251.1 CDS STMUK_2745 NC_016863.1 2863385 2864227 R putative cytoplasmic protein complement(2863385..2864227) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253252.1 CDS STMUK_2747 NC_016863.1 2866121 2867800 D similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2866121..2867800 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253253.1 CDS STMUK_2748 NC_016863.1 2868917 2869792 D putative integrase 2868917..2869792 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253254.1 CDS STMUK_2749 NC_016863.1 2869958 2871832 D putative inner membrane protein 2869958..2871832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253255.1 CDS STMUK_2750 NC_016863.1 2872092 2873375 R putative inner membrane protein complement(2872092..2873375) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253256.1 CDS STMUK_2751 NC_016863.1 2873953 2874549 D similar to E. coli prophage CP4-57 integrase(AAC75670.1); Blastp hit to AAC75670.1 (413 aa); putative integrase 2873953..2874549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253257.1 CDS STMUK_2752 NC_016863.1 2875003 2875332 R putative integrase core domain protein complement(2875003..2875332) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253258.1 CDS STMUK_2753 NC_016863.1 2875554 2875820 R putative transposase complement(2875554..2875820) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253259.1 CDS STMUK_2754 NC_016863.1 2876273 2876911 R putative cytoplasmic protein complement(2876273..2876911) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253260.1 CDS STMUK_2755 NC_016863.1 2876908 2878890 R superfamily I; putative DNA/RNA helicase complement(2876908..2878890) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253261.1 CDS STMUK_2756 NC_016863.1 2879169 2879468 D putative transposase 2879169..2879468 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253262.1 CDS STMUK_2757 NC_016863.1 2879465 2880331 D similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2879465..2880331 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253263.1 CDS fljA NC_016863.1 2881111 2881650 R repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor complement(2881111..2881650) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253264.1 CDS fljB NC_016863.1 2881718 2883238 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2881718..2883238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253265.1 CDS hin NC_016863.1 2883330 2883902 D DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2883330..2883902 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253266.1 CDS iroB NC_016863.1 2884865 2885980 D related to UDP-glucuronosyltransferase; putative glycosyl transferase 2884865..2885980 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253267.1 CDS iroC NC_016863.1 2886061 2889714 D similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter protein 2886061..2889714 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253268.1 CDS iroD NC_016863.1 2889824 2891068 D similar to Escherichia coli enterochelin esterase (AAC73686.1); Fes; enterochelin esterase 2889824..2891068 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253269.1 CDS iroE NC_016863.1 2891100 2892035 D alpha/beta superfamily; putative hydrolase 2891100..2892035 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253270.1 CDS iroN NC_016863.1 2892077 2894257 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2892077..2894257) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253271.1 CDS STMUK_2766 NC_016863.1 2894783 2895115 R putative inner membrane protein complement(2894783..2895115) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253272.1 CDS pipB2 NC_016863.1 2895290 2896342 R PipB2; similar to STM1088; contains pentapeptide repeats; secreted by SPI-2 type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein complement(2895290..2896342) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253273.1 CDS virK NC_016863.1 2896861 2897790 D similar to Escherichia coli putative enzyme (AAC73964.1); similar to virK in Shigella; virulence protein 2896861..2897790 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253274.1 CDS mig14 NC_016863.1 2898083 2898979 D putative transcriptional activator 2898083..2898979 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253275.1 CDS STMUK_2770 NC_016863.1 2899495 2899608 D similar to putative inner membrane protein (Pid: YP_002115736.1).; hypothetical protein 2899495..2899608 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253276.1 CDS nixA NC_016863.1 2899701 2900714 R putative nickel transporter complement(2899701..2900714) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253277.1 CDS tctE NC_016863.1 2900847 2902262 R similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); tricarboxylic transport; regulatory protein complement(2900847..2902262) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253278.1 CDS tctD NC_016863.1 2902249 2902923 R transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; regulatory protein complement(2902249..2902923) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253279.1 CDS STMUK_2774 NC_016863.1 2903078 2904055 D tricarboxylic transport 2903078..2904055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253280.1 CDS STMUK_2775 NC_016863.1 2904067 2904501 D tricarboxylic transport 2904067..2904501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253281.1 CDS STMUK_2776 NC_016863.1 2904512 2906026 D tricarboxylic transport 2904512..2906026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253282.1 CDS STMUK_2777 NC_016863.1 2906320 2907306 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms h; hypothetical protein 2906320..2907306 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253283.1 CDS ygaF NC_016863.1 2907332 2908600 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2907332..2908600 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253284.1 CDS gabD NC_016863.1 2908622 2910070 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2908622..2910070 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253285.1 CDS gabT NC_016863.1 2910085 2911368 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2910085..2911368 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253286.1 CDS gabP NC_016863.1 2911498 2912898 D similar to Escherichia coli transport permease protein of gamma-aminobutyrate (AAC75710.1); APC family; RpoS dependent; gamma-aminobutyrate transporter 2911498..2912898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253287.1 CDS ygaE NC_016863.1 2912940 2913617 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2912940..2913617 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253288.1 CDS ygaU NC_016863.1 2913639 2914088 R putative LysM domain; LysM domain/BON superfamily protein complement(2913639..2914088) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253289.1 CDS yqaE NC_016863.1 2914188 2914346 R YqaE family; putative transport protein complement(2914188..2914346) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253290.1 CDS STMUK_2785 NC_016863.1 2914529 2914828 D ArsR family; putative regulatory protein 2914529..2914828 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253291.1 CDS ygaP NC_016863.1 2914838 2915365 D putative rhodanese-like sulfurtransferase 2914838..2915365 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253292.1 CDS STMUK_2787 NC_016863.1 2915444 2915623 D similar to hypothetical protein SPAB_03475 (Pid: YP_001589655.1).; hypothetical protein 2915444..2915623 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253293.1 CDS stpA NC_016863.1 2915713 2916114 R DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein complement(2915713..2916114) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253294.1 CDS STMUK_2789 NC_016863.1 2916813 2917262 D putative inner membrane protein 2916813..2917262 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253295.1 CDS ygaC NC_016863.1 2917297 2917647 R hypothetical protein complement(2917297..2917647) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253296.1 CDS ygaM NC_016863.1 2917797 2918135 D hypothetical protein 2917797..2918135 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253297.1 CDS STMUK_2792 NC_016863.1 2918219 2919553 R similar to Escherichia coli putative regulator (AAC77296.1); GntR family; putative regulatory protein complement(2918219..2919553) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253298.1 CDS STMUK_2793 NC_016863.1 2919642 2920073 D putative cytoplasmic protein 2919642..2920073 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253299.1 CDS nrdH NC_016863.1 2920345 2920590 D glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2920345..2920590 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253300.1 CDS nrdI NC_016863.1 2920587 2920997 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2920587..2920997 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253301.1 CDS nrdE NC_016863.1 2920970 2923114 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2920970..2923114 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253302.1 CDS nrdF NC_016863.1 2923125 2924084 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2923125..2924084 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253303.1 CDS proV NC_016863.1 2924439 2925641 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2924439..2925641 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253304.1 CDS proW NC_016863.1 2925634 2926698 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2925634..2926698 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253305.1 CDS proX NC_016863.1 2926768 2927763 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2926768..2927763 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253306.1 CDS STMUK_2801 NC_016863.1 2927928 2929112 D similar to Escherichia coli putative transport protein (AAC75728.1); putative inner membrane protein 2927928..2929112 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253307.1 CDS emrR NC_016863.1 2929609 2930139 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2929609..2930139 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253308.1 CDS emrA NC_016863.1 2930266 2931438 D similar to Escherichia coli multidrug resistance secretion protein (AAC75732.1); multidrug resistance secretion protein 2930266..2931438 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253309.1 CDS emrB NC_016863.1 2931455 2932993 D similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); MFS family; putative multidrug transport protein 2931455..2932993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253310.1 CDS STMUK_2805 NC_016863.1 2933042 2934412 R putative glycoporin complement(2933042..2934412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253311.1 CDS luxS NC_016863.1 2934758 2935273 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2934758..2935273) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253312.1 CDS gshA NC_016863.1 2935423 2936979 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2935423..2936979) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253313.1 CDS yqaA NC_016863.1 2937056 2937481 R putative inner membrane protein complement(2937056..2937481) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253314.1 CDS yqaB NC_016863.1 2937478 2938044 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase complement(2937478..2938044) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253315.1 CDS csrA NC_016863.1 2939439 2939624 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2939439..2939624) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253316.1 CDS alaS NC_016863.1 2939859 2942489 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2939859..2942489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253317.1 CDS recX NC_016863.1 2942725 2943225 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2942725..2943225) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253318.1 CDS recA NC_016863.1 2943342 2944403 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2943342..2944403) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253319.1 CDS ygaD NC_016863.1 2944488 2944985 R competence damage-inducible protein A complement(2944488..2944985) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253320.1 CDS mltB NC_016863.1 2945463 2946542 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2945463..2946542) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253321.1 CDS srlA NC_016863.1 2946796 2947359 D similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75744.1); PTS family; glucitol/sorbitol-specific enzyme IIC component 2946796..2947359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253322.1 CDS srlE NC_016863.1 2947356 2948327 D similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75745.1); PTS family; PTS system glucitol/sorbitol-specific transporter subunit IIB 2947356..2948327 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253323.1 CDS slrB NC_016863.1 2948339 2948701 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system glucitol/sorbitol-specific transporter subunit IIA 2948339..2948701 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253324.1 CDS srlD NC_016863.1 2948713 2949492 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2948713..2949492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253325.1 CDS gutM NC_016863.1 2949568 2949927 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2949568..2949927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253326.1 CDS srlR NC_016863.1 2950125 2950898 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2950125..2950898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253327.1 CDS gutQ NC_016863.1 2950930 2951856 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2950930..2951856 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253328.1 CDS ygaA NC_016863.1 2951853 2953373 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2951853..2953373) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253329.1 CDS STMUK_2829 NC_016863.1 2953559 2954998 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2953559..2954998 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253330.1 CDS ygbD NC_016863.1 2954995 2956128 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2954995..2956128 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253331.1 CDS hypF NC_016863.1 2956225 2958465 R similar to Escherichia coli transcriptional regulatory protein (AAC75754.1); hydrogenase maturation protein complement(2956225..2958465) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253332.1 CDS hydN NC_016863.1 2958611 2959156 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2958611..2959156) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253333.1 CDS STMUK_2833 NC_016863.1 2959357 2960166 R putative periplasmic protein; hypothetical protein complement(2959357..2960166) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253334.1 CDS hycI NC_016863.1 2960193 2960663 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2960193..2960663) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253335.1 CDS hycH NC_016863.1 2960656 2961066 R similar to Escherichia coli processing of large subunit HycE of hydrogenase 3; part of the FHL complex (AAC75760.1); hydrogenase 3 large subunit processing protein complement(2960656..2961066) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253336.1 CDS hycG NC_016863.1 2961063 2961830 R similar to Escherichia coli hydrogenase (AAC75761.1); hydrogenase complement(2961063..2961830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253337.1 CDS hycF NC_016863.1 2961830 2962372 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released; formate hydrogenlyase complex iron-sulfur subunit complement(2961830..2962372) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253338.1 CDS hycE NC_016863.1 2962382 2964091 R similar to Escherichia coli large subunit of hydrogenase 3; part of FHL complex (AAC75763.1); hydrogenase 3 large subunit complement(2962382..2964091) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253339.1 CDS hycD NC_016863.1 2964109 2965032 R similar to Escherichia coli membrane-spanning protein of hydrogenase 3; part of FHL complex (AAC75764.1); hydrogenase 3 membrane subunit complement(2964109..2965032) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253340.1 CDS hycC NC_016863.1 2965035 2966861 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 complement(2965035..2966861) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253341.1 CDS hycB NC_016863.1 2966861 2967469 R similar to Escherichia coli probable small subunit of hydrogenase-3; iron-sulfur protein; part of FHL complex (AAC75766.1); hydrogenase-3 iron-sulfur subunit complement(2966861..2967469) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253342.1 CDS hycA NC_016863.1 2967615 2968076 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2967615..2968076) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253343.1 CDS hypA NC_016863.1 2968286 2968642 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 2968286..2968642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253344.1 CDS hypB NC_016863.1 2968711 2969583 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2968711..2969583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253345.1 CDS hypC NC_016863.1 2969574 2969846 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 2969574..2969846 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253346.1 CDS hypD NC_016863.1 2969846 2970967 D similar to Escherichia coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); putative hydrogenase formation protein 2969846..2970967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253347.1 CDS hypE NC_016863.1 2971006 2971974 D similar to Escherichia coli protein which plays a structural role in maturation of all 3 hydrogenases (AAC75772.1); putative hydrogenase formation protein 2971006..2971974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253348.1 CDS fhlA NC_016863.1 2972193 2974271 D formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 2972193..2974271 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253349.1 CDS ygbA NC_016863.1 2974333 2974677 R hypothetical protein complement(2974333..2974677) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253350.1 CDS sitA NC_016863.1 2974859 2975776 D SitA (gi|5231094); Salmonella iron transporter; Fur-regulated; putative periplasmic binding protein 2974859..2975776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253351.1 CDS sitB NC_016863.1 2975773 2976594 D SitB (gi|5231095); Salmonella iron transporter; Fur-regulated; putative ATP-binding protein 2975773..2976594 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253352.1 CDS sitC NC_016863.1 2976591 2977451 D SitC (gi|5231096); Salmonella iron transporter; Fur-regulated; putative permease 2976591..2977451 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253353.1 CDS sitD NC_016863.1 2977442 2978290 D SitD (gi|5231097); Salmonella iron transporter; Fur-regulated; putative permease 2977442..2978290 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253354.1 CDS avrA NC_016863.1 2978460 2979296 R invasion protein; inhbits activation of key proinflammatory transcription factor NF-kappaB; secreted effector protein complement(2978460..2979296) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253355.1 CDS sprB NC_016863.1 2979457 2980212 R transcriptional regulator SprB (gi|5007028); transcriptional regulator complement(2979457..2980212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253356.1 CDS hilC NC_016863.1 2980597 2981484 R SprA; HilC (gi|4455106); helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; invasion regulatory protein complement(2980597..2981484) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253357.1 CDS orgC NC_016863.1 2981829 2982281 R putative cytoplasmic protein complement(2981829..2982281) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253358.1 CDS orgB NC_016863.1 2982278 2982958 R oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex export protein complement(2982278..2982958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253359.1 CDS orgA NC_016863.1 2982915 2983514 R oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex assembly protein complement(2982915..2983514) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253360.1 CDS prgK NC_016863.1 2983486 2984244 R PrgK protein precursor (SW:PRGK_SALTY); cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; needle complex inner membrane lipoprotein complement(2983486..2984244) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253361.1 CDS prgJ NC_016863.1 2984241 2984546 R PrgJ protein (SW:PRGJ_SALTY); invasion protein; may cap needle complex; type III secretion apparatus; needle complex minor subunit complement(2984241..2984546) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253362.1 CDS prgI NC_016863.1 2984565 2984807 R PrgI protein (SW:PRGI_SALTY); invasion protein; type III secretion apparatus; needle complex major subunit complement(2984565..2984807) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253363.1 CDS prgH NC_016863.1 2984832 2986010 R PrgH protein (SW:PRGH_SALTY); invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; needle complex inner membrane protein complement(2984832..2986010) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253364.1 CDS hilD NC_016863.1 2986326 2987255 D HilD (gi|4455108); helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; invasion protein regulatory protein 2986326..2987255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253365.1 CDS hilA NC_016863.1 2988346 2990007 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2988346..2990007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253366.1 CDS iagB NC_016863.1 2990025 2990507 D invasion associated gene protein IagB precursor (SW:IAGB_SALTY); invasion protein precursor 2990025..2990507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253367.1 CDS sptP NC_016863.1 2990561 2992192 R protein tyrosine phosphatase SptP (gi|1519054); translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; protein tyrosine phosphatase/GTPase activating protein complement(2990561..2992192) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253368.1 CDS sicP NC_016863.1 2992179 2992571 R SicP (gi|3283218); virulence protein; chaperone for SptP; type III secretion; secretion system chaperone complement(2992179..2992571) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253369.1 CDS STMUK_2869 NC_016863.1 2992598 2992858 R putative cytoplasmic protein complement(2992598..2992858) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253370.1 CDS iacP NC_016863.1 2992902 2993150 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2992902..2993150) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253371.1 CDS sipA NC_016863.1 2993169 2995226 R Salmonella invasion protein SipA (gi|1172128); binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; secreted effector protein complement(2993169..2995226) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253372.1 CDS sipD NC_016863.1 2995245 2996276 R cell invasion protein SspD protein (gi|7443300); involved in translocating secreted proteins to host cells; translocon; type III secretion; translocation machinery component complement(2995245..2996276) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253373.1 CDS sipC NC_016863.1 2996347 2997576 R cell invasion protein SspC (gi|7443298); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; translocation machinery component complement(2996347..2997576) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253374.1 CDS sipB NC_016863.1 2997604 2999385 R cell invasion protein SspB (gi|975295); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipB; translocation machinery component complement(2997604..2999385) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253375.1 CDS sicA NC_016863.1 2999388 2999885 R surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; secretion chaperone complement(2999388..2999885) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253376.1 CDS spaS NC_016863.1 3000023 3001093 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(3000023..3001093) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253377.1 CDS spaR NC_016863.1 3001080 3001871 R surface presentation of antigens protein SpaR (SW:SPAR_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein complement(3001080..3001871) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253378.1 CDS spaQ NC_016863.1 3001875 3002135 R surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein complement(3001875..3002135) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253379.1 CDS spaP NC_016863.1 3002161 3002835 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(3002161..3002835) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253380.1 CDS spaO NC_016863.1 3002825 3003736 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(3002825..3003736) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253381.1 CDS invJ NC_016863.1 3003736 3004746 R surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; needle length control protein complement(3003736..3004746) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253382.1 CDS invI NC_016863.1 3004746 3005189 R surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; needle complex assembly protein complement(3004746..3005189) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253383.1 CDS invC NC_016863.1 3005167 3006462 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(3005167..3006462) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253384.1 CDS invB NC_016863.1 3006459 3006866 R surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; secretion chaperone complement(3006459..3006866) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253385.1 CDS invA NC_016863.1 3006890 3008947 R invasion protein InvA (SW:INVA_SALTY); inner membrane protein; type III secretion apparatus; needle complex export protein complement(3006890..3008947) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253386.1 CDS invE NC_016863.1 3008972 3010090 R invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein complement(3008972..3010090) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253387.1 CDS invG NC_016863.1 3010087 3011775 R InvG protein precursor (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; outer membrane secretin precursor complement(3010087..3011775) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253388.1 CDS invF NC_016863.1 3011772 3012422 R invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; invasion regulatory protein complement(3011772..3012422) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253389.1 CDS invH NC_016863.1 3012879 3013322 D invasion protein InvH precursor (SW:INVH_SALTY); stabilizes InvG secretin; type III secretion apparatus; needle complex outer membrane lipoprotein precursor 3012879..3013322 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253390.1 CDS STMUK_2890 NC_016863.1 3013753 3014202 D putative cytoplasmic protein 3013753..3014202 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253391.1 CDS STMUK_2891 NC_016863.1 3014187 3014534 D similar to STM2011 and STM2508; putative cytoplasmic protein 3014187..3014534 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253392.1 CDS STMUK_2892 NC_016863.1 3014807 3015133 R putative cytoplasmic protein complement(3014807..3015133) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253393.1 CDS STMUK_2893 NC_016863.1 3015822 3016112 D putative ABC-type transporter 3015822..3016112 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253394.1 CDS STMUK_2894 NC_016863.1 3016109 3016636 D putative acetyltransferase 3016109..3016636 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253395.1 CDS STMUK_2895 NC_016863.1 3016709 3016897 R putative cytoplasmic protein complement(3016709..3016897) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253396.1 CDS pphB NC_016863.1 3017261 3017917 D similar to Escherichia coli protein phosphatase 2 (AAC75776.1); serine/threonine-specific protein phosphatase 2 3017261..3017917 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253397.1 CDS STMUK_2897 NC_016863.1 3018089 3018610 R putative cytoplasmic protein complement(3018089..3018610) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253398.1 CDS mutS NC_016863.1 3018769 3021336 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3018769..3021336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253399.1 CDS STMUK_2899 NC_016863.1 3021392 3021772 R putative cytoplasmic protein complement(3021392..3021772) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253400.1 CDS STMUK_2901 NC_016863.1 3023064 3023996 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 3023064..3023996 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253401.1 CDS STMUK_2902 NC_016863.1 3024038 3025534 R similar to Escherichia coli putative transport protein (AAC75782.1); putative permease complement(3024038..3025534) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253402.1 CDS STMUK_2903 NC_016863.1 3025531 3026481 R similar to Escherichia coli UDP-galactose-4-epimerase (AAC73846.1); putative nucleoside-diphosphate-sugar epimerase complement(3025531..3026481) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253403.1 CDS ygbM NC_016863.1 3026521 3027297 R hypothetical protein complement(3026521..3027297) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253404.1 CDS ygbL NC_016863.1 3027302 3027940 R similar to Escherichia coli putative epimerase/aldolase (AAC75780.1); putative aldolase complement(3027302..3027940) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253405.1 CDS ygbK NC_016863.1 3027937 3029199 R putative tRNA synthase complement(3027937..3029199) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253406.1 CDS ygbJ NC_016863.1 3029193 3030116 R similar to Escherichia coli putative dehydrogenase (AAC75778.1); 3-hydroxyisobutyrate dehydrogenase complement(3029193..3030116) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253407.1 CDS ygbI NC_016863.1 3030313 3031077 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); DeoR family; putative regulatory protein 3030313..3031077 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253408.1 CDS STMUK_2909 NC_016863.1 3031096 3031500 R similar to Escherichia coli transcriptional regulator for cryptic hemolysin (AAC74714.1); putative transcriptional regulator complement(3031096..3031500) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253409.1 CDS STMUK_2910 NC_016863.1 3031671 3032264 D similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); putative flavoprotein 3031671..3032264 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253410.1 CDS STMUK_2911 NC_016863.1 3032264 3033691 D similar to Escherichia coli putative oxidoreductase (AAC76846.1); putative 3-polyprenyl-4-hydroxybenzoate decarboxylase 3032264..3033691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253411.1 CDS STMUK_2912 NC_016863.1 3033702 3033938 D putative cytoplasmic protein 3033702..3033938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253412.1 CDS rpoS NC_016863.1 3033983 3034975 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3033983..3034975) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253413.1 CDS nlpD NC_016863.1 3035038 3036159 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3035038..3036159) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253414.1 CDS pcm NC_016863.1 3036335 3036961 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3036335..3036961) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253415.1 CDS surE NC_016863.1 3036955 3037716 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3036955..3037716) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253416.1 CDS ygbO NC_016863.1 3037697 3038746 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3037697..3038746) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253417.1 CDS ispF NC_016863.1 3038743 3039222 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(3038743..3039222) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253418.1 CDS ispD NC_016863.1 3039222 3039932 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthes; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3039222..3039932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253419.1 CDS ftsB NC_016863.1 3039951 3040262 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3039951..3040262) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253420.1 CDS ygbE NC_016863.1 3040453 3040809 R similar to Escherichia coli putative cytochrome oxidase subunit (AAC75791.1); hypothetical protein complement(3040453..3040809) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253421.1 CDS cysC NC_016863.1 3040827 3041432 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3040827..3041432) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253422.1 CDS cysN NC_016863.1 3041419 3042858 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; p; sulfate adenylyltransferase subunit 1 complement(3041419..3042858) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253423.1 CDS cysD NC_016863.1 3042868 3043776 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3042868..3043776) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253424.1 CDS iap NC_016863.1 3044027 3045073 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3044027..3045073 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253425.1 CDS ygbF NC_016863.1 3046172 3046468 R hypothetical protein complement(3046172..3046468) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253426.1 CDS STMUK_2927 NC_016863.1 3046465 3047385 R putative cytoplasmic protein complement(3046465..3047385) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253427.1 CDS ygcH NC_016863.1 3047382 3048032 R putative cytoplasmic protein complement(3047382..3048032) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253428.1 CDS STMUK_2929 NC_016863.1 3048014 3048760 R putative cytoplasmic protein complement(3048014..3048760) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253429.1 CDS yghJ NC_016863.1 3048771 3049829 R putative cytoplasmic protein complement(3048771..3049829) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253430.1 CDS STMUK_2931 NC_016863.1 3049843 3050403 R putative transposase complement(3049843..3050403) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253431.1 CDS STMUK_2932 NC_016863.1 3050400 3051956 R putative cytoplasmic protein complement(3050400..3051956) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253432.1 CDS ygcB NC_016863.1 3051968 3054631 R putative helicase complement(3051968..3054631) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253433.1 CDS sopD NC_016863.1 3055076 3056029 D hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein 3055076..3056029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253434.1 CDS cysH NC_016863.1 3056117 3056851 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3056117..3056851) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253435.1 CDS cysI NC_016863.1 3056927 3058639 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3056927..3058639) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253436.1 CDS cysJ NC_016863.1 3058639 3060438 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3058639..3060438) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253437.1 CDS ptpS NC_016863.1 3060862 3061224 D similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); putative 6-pyruvoyl tetrahydrobiopterin synthase 3060862..3061224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253438.1 CDS STMUK_2939 NC_016863.1 3061312 3062109 R beta-lactamase superfamily II; putative metal-dependent hydrolase complement(3061312..3062109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253439.1 CDS ygcF NC_016863.1 3063936 3064607 R putative organic radical activating enzymes; hypothetical protein complement(3063936..3064607) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253440.1 CDS eno NC_016863.1 3064743 3066041 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3064743..3066041) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253441.1 CDS pyrG NC_016863.1 3066124 3067761 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3066124..3067761) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253442.1 CDS mazG NC_016863.1 3067989 3068789 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus; nucleoside triphosphate pyrophosphohydrolase complement(3067989..3068789) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253443.1 CDS STMUK_2944 NC_016863.1 3069819 3070175 R contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; putative transcriptional regulator complement(3069819..3070175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253444.1 CDS relA NC_016863.1 3070259 3072493 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(3070259..3072493) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253445.1 CDS rumA NC_016863.1 3072545 3073840 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3072545..3073840) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253446.1 CDS barA NC_016863.1 3073898 3076654 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3073898..3076654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253447.1 CDS STMUK_2948 NC_016863.1 3076698 3077840 R putative glycerate kinase 2 complement(3076698..3077840) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253448.1 CDS gudD NC_016863.1 3077918 3079258 R similar to Escherichia coli putative glucarate dehydratase (AAC75829.1); d-glucarate dehydratase complement(3077918..3079258) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253449.1 CDS ygcY NC_016863.1 3079279 3080619 R similar to Escherichia coli putative glucarate dehydratase (AAC75830.1); putative D-glucarate dehydratase complement(3079279..3080619) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253450.1 CDS gudT NC_016863.1 3080616 3081974 R similar to Escherichia coli putative transport protein (AAC75831.1); MFS family; putative D-glucarate permease complement(3080616..3081974) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253451.1 CDS STMUK_2952 NC_016863.1 3082455 3082904 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3082455..3082904) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253452.1 CDS yqcB NC_016863.1 3082923 3083705 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3082923..3083705) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253453.1 CDS yqcC NC_016863.1 3083705 3084034 R putative cytoplasmic protein complement(3083705..3084034) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253454.1 CDS syd NC_016863.1 3084646 3085191 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3084646..3085191) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253455.1 CDS queF NC_016863.1 3085260 3086108 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3085260..3086108 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253456.1 CDS ygdH NC_016863.1 3086221 3087585 D putative nucleotide binding protein 3086221..3087585 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253457.1 CDS sdaC NC_016863.1 3088150 3089439 D similar to Escherichia coli probable serine transporter (AAC75838.1); HAAAP family; putative serine transport protein 3088150..3089439 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253458.1 CDS sdaB NC_016863.1 3089498 3090865 D similar to Escherichia coli L-serine dehydratase; deaminase; L-SD2 (AAC75839.1); L-serine dehydratase/L-threonine deaminase 2 3089498..3090865 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253459.1 CDS exo NC_016863.1 3090976 3091791 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3090976..3091791 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253460.1 CDS fucO NC_016863.1 3091883 3093031 R similar to Escherichia coli L-1,2-propanediol oxidoreductase (AAC75841.1); L-1,2-propanediol oxidoreductase complement(3091883..3093031) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253461.1 CDS fucA NC_016863.1 3093048 3093695 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(3093048..3093695) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253462.1 CDS STMUK_2963 NC_016863.1 3094289 3095566 D similar to L-fucose:H+ symporter permease (Pid: YP_002115928.1).; hypothetical protein 3094289..3095566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253463.1 CDS fucI NC_016863.1 3095598 3097373 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3095598..3097373 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253464.1 CDS fucK NC_016863.1 3097474 3098892 D similar to Escherichia coli L-fuculokinase (AAC75845.1); L-fuculokinase 3097474..3098892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253465.1 CDS fucU NC_016863.1 3098894 3099316 D similar to Escherichia coli protein of fucose operon (AAC75846.1); putative L-fucose-binding protein 3098894..3099316 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253466.1 CDS fucR NC_016863.1 3099374 3100084 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3099374..3100084 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253467.1 CDS ygdE NC_016863.1 3100143 3101243 R putative RNA 2'-O-ribose methyltransferase complement(3100143..3101243) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253468.1 CDS ygdD NC_016863.1 3101236 3101631 R hypothetical protein complement(3101236..3101631) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253469.1 CDS gcvA NC_016863.1 3101650 3102567 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3101650..3102567) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253470.1 CDS ygdI NC_016863.1 3102914 3103141 R putative lipoprotein complement(3102914..3103141) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253471.1 CDS csdA NC_016863.1 3103334 3104539 D cysteine sulfinate desulfinase 3103334..3104539 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253472.1 CDS ygdK NC_016863.1 3104539 3104982 D similar to SufE; putative FeS center assembly protein 3104539..3104982 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253473.1 CDS STMUK_2974 NC_016863.1 3105282 3106169 D hypothetical protein 3105282..3106169 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253474.1 CDS ygdL NC_016863.1 3106221 3107027 R similar to Escherichia coli putative enzyme (AAC75854.1); hypothetical protein complement(3106221..3107027) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253475.1 CDS mltA NC_016863.1 3107137 3108234 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3107137..3108234) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253476.1 CDS amiC NC_016863.1 3108734 3109987 R similar to Escherichia coli putative amidase (AAC75856.1); N-acetylmuramoyl-L-alanine amidase complement(3108734..3109987) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253477.1 CDS argA NC_016863.1 3110220 3111551 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3110220..3111551 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253478.1 CDS recD NC_016863.1 3111654 3113489 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3111654..3113489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253479.1 CDS recB NC_016863.1 3113486 3117031 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3113486..3117031) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253480.1 CDS ptr NC_016863.1 3117024 3119912 R similar to Escherichia coli protease III (AAC75860.1); protease III complement(3117024..3119912) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253481.1 CDS recC NC_016863.1 3120090 3123461 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3120090..3123461) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253482.1 CDS ppdC NC_016863.1 3123477 3123797 R similar to Escherichia coli prepilin peptidase dependent protein C (AAC75862.1); putative component involved type IV pilin biogenesis; hypothetical protein complement(3123477..3123797) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253483.1 CDS ygdB NC_016863.1 3123782 3124189 R hypothetical protein complement(3123782..3124189) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253484.1 CDS ppdB NC_016863.1 3124186 3124749 R similar to Escherichia coli prepilin peptidase dependent protein B (AAC75864.1); putative component involved in type IV pilin biogenesis; hypothetical protein complement(3124186..3124749) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253485.1 CDS ppdA NC_016863.1 3124740 3125210 R similar to Escherichia coli prepilin peptidase dependent protein A (AAC75865.1); putative component innvolved in type IV pilin biogenesis; hypothetical protein complement(3124740..3125210) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253486.1 CDS thyA NC_016863.1 3125395 3126189 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3125395..3126189) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253487.1 CDS lgt NC_016863.1 3126196 3127071 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3126196..3127071) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253488.1 CDS ptsP NC_016863.1 3127287 3129533 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein complement(3127287..3129533) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253489.1 CDS ygdP NC_016863.1 3129546 3130076 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3129546..3130076) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253490.1 CDS mutH NC_016863.1 3130759 3131454 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3130759..3131454 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253491.1 CDS ygdQ NC_016863.1 3131636 3132349 D similar to Escherichia coli putative transport protein (AAC75871.1); integral membrane protein; putative transport protein 3131636..3132349 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253492.1 CDS ygdR NC_016863.1 3132519 3132737 D POT family; putative peptide transport protein 3132519..3132737 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253493.1 CDS tas NC_016863.1 3132928 3133968 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3132928..3133968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253494.1 CDS ygeD NC_016863.1 3134055 3135257 R similar to Escherichia coli putative resistance protein (AAC75874.1); lysophospholipid transporter LplT complement(3134055..3135257) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253495.1 CDS aas NC_016863.1 3135250 3137409 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by t; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3135250..3137409) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253496.1 CDS galR NC_016863.1 3138002 3139030 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3138002..3139030 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253497.1 CDS STMUK_3000 NC_016863.1 3139041 3140063 D similar to Escherichia coli ascBF operon repressor (AAC75756.1); putative transcriptional regulator 3139041..3140063 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253498.1 CDS lysA NC_016863.1 3140073 3141335 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3140073..3141335) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253499.1 CDS lysR NC_016863.1 3141453 3142388 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3141453..3142388 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253500.1 CDS ygeA NC_016863.1 3142360 3143067 R similar to Escherichia coli putative resistance proteins (AAC75879.1); putative racemase complement(3142360..3143067) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253501.1 CDS araE NC_016863.1 3143180 3144598 R similar to Escherichia coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); MFS family; L-arabinose/proton symport protein complement(3143180..3144598) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253502.1 CDS kduD NC_016863.1 3144952 3145713 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3144952..3145713) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253503.1 CDS kduI NC_016863.1 3145770 3146606 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(3145770..3146606) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253504.1 CDS yqeF NC_016863.1 3147036 3148214 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and; acetyl-CoA acetyltransferase complement(3147036..3148214) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253505.1 CDS STMUK_3008 NC_016863.1 3148337 3149200 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73606.1); LysR family; putative transcriptional regulator complement(3148337..3149200) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253506.1 CDS STMUK_3009 NC_016863.1 3149277 3149759 D putative inner membrane protein 3149277..3149759 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253507.1 CDS STMUK_3010 NC_016863.1 3149901 3151130 D similar to Escherichia coli putative transporter protein (AAC75884.1); putative transport protein 3149901..3151130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253508.1 CDS yohL NC_016863.1 3151161 3151433 R putative cytoplasmic protein complement(3151161..3151433) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253509.1 CDS yohM NC_016863.1 3151555 3152499 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3151555..3152499 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253510.1 CDS STMUK_3013 NC_016863.1 3152709 3153467 R similar to transcriptional regulator SprB (gi|5007028); putative cytoplasmic protein complement(3152709..3153467) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253511.1 CDS STMUK_3014 NC_016863.1 3153454 3153966 R similar to hypothetical protein STM3025.1N (Pid: NP_945169.1).; hypothetical protein complement(3153454..3153966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253512.1 CDS STMUK_3015 NC_016863.1 3154110 3155186 R putative outer membrane protein complement(3154110..3155186) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253513.1 CDS stdC NC_016863.1 3155183 3155926 R similar to Escherichia coli putative chaperone (AAC73811.1); putative fimbrial chaperone complement(3155183..3155926) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253514.1 CDS stdB NC_016863.1 3155967 3158456 R similar to Escherichia coli putative membrane protein (AAC76082.1); putative outer membrane usher protein complement(3155967..3158456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253515.1 CDS stdA NC_016863.1 3158576 3159286 R similar to Escherichia coli putative fimbrial-like protein (AAC73813.1); putative fimbrial-like protein complement(3158576..3159286) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253516.1 CDS STMUK_3019 NC_016863.1 3159879 3160511 R hypothetical protein complement(3159879..3160511) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253517.1 CDS STMUK_3020 NC_016863.1 3160558 3161094 R similar to Escherichia coli outer membrane protein X (AAC73901.1); Ail/OmpX-like protein complement(3160558..3161094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253518.1 CDS STMUK_3021 NC_016863.1 3161900 3162298 R stability determinant protein; plasmid maintenance protein complement(3161900..3162298) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253519.1 CDS STMUK_3022 NC_016863.1 3162298 3162525 R putative cytoplasmic protein complement(3162298..3162525) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253520.1 CDS STMUK_3023 NC_016863.1 3162702 3162953 D hypothetical protein 3162702..3162953 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253521.1 CDS STMUK_3024 NC_016863.1 3163228 3164034 D putative inner membrane protein 3163228..3164034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253522.1 CDS STMUK_3026 NC_016863.1 3164319 3165077 R similar to Escherichia coli putative lipoprotein (AAC75903.1); putative metalloendopeptidase complement(3164319..3165077) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253523.1 CDS idi NC_016863.1 3165342 3165887 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3165342..3165887 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253524.1 CDS lysS NC_016863.1 3165963 3167480 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA; lysyl-tRNA synthetase complement(3165963..3167480) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253525.1 CDS prfB NC_016863.1 3167490 3168371 R peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 complement(3167490..3168371) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253526.1 CDS recJ NC_016863.1 3168693 3170426 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3168693..3170426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253527.1 CDS dsbC NC_016863.1 3170432 3171145 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3170432..3171145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253528.1 CDS xerD NC_016863.1 3171169 3172065 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d; site-specific tyrosine recombinase XerD complement(3171169..3172065) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253529.1 CDS fldB NC_016863.1 3172178 3172699 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3172178..3172699 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253530.1 CDS ygfX NC_016863.1 3172752 3173165 R putative inner membrane protein complement(3172752..3173165) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253531.1 CDS ygfY NC_016863.1 3173146 3173412 R hypothetical protein complement(3173146..3173412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253532.1 CDS ygfZ NC_016863.1 3173662 3174642 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and t; putative global regulator 3173662..3174642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253533.1 CDS yqfA NC_016863.1 3174758 3175417 R similar to Escherichia coli putative oxidoreductase (AAC75937.1); putative hemolysin complement(3174758..3175417) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253534.1 CDS yqfB NC_016863.1 3175581 3175892 R hypothetical protein complement(3175581..3175892) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253535.1 CDS bglA NC_016863.1 3176051 3177484 D similar to Escherichia coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); 6-phospho-beta-glucosidase 3176051..3177484 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253536.1 CDS STMUK_3040 NC_016863.1 3177532 3178425 R putative outer membrane protein complement(3177532..3178425) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253537.1 CDS gcvP NC_016863.1 3178881 3181754 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3178881..3181754) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253538.1 CDS gcvH NC_016863.1 3181917 3182306 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P t; glycine cleavage system protein H complement(3181917..3182306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253539.1 CDS gcvT NC_016863.1 3182332 3183426 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3182332..3183426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253540.1 CDS visC NC_016863.1 3183881 3185083 R hypothetical protein complement(3183881..3185083) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253541.1 CDS ubiH NC_016863.1 3185209 3186387 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3185209..3186387) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253542.1 CDS pepP NC_016863.1 3186384 3187700 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3186384..3187700) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253543.1 CDS ygfB NC_016863.1 3187726 3188310 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3187726..3188310) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253544.1 CDS ygfE NC_016863.1 3188471 3188800 D Z-ring-associated protein 3188471..3188800 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253545.1 CDS ygfA NC_016863.1 3189094 3189642 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; putative ligase 3189094..3189642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253546.1 CDS serA NC_016863.1 3190023 3191255 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3190023..3191255) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253547.1 CDS rpiA NC_016863.1 3191521 3192180 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(3191521..3192180) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253548.1 CDS iciA NC_016863.1 3192334 3193227 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3192334..3193227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253549.1 CDS yggE NC_016863.1 3193493 3194239 R putative periplasmic immunogenic protein; hypothetical protein complement(3193493..3194239) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253550.1 CDS yggA NC_016863.1 3194333 3194968 R Involved in the export of arginine; arginine exporter protein complement(3194333..3194968) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253551.1 CDS yggB NC_016863.1 3195168 3196028 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS complement(3195168..3196028) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253552.1 CDS fba NC_016863.1 3196255 3197334 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(3196255..3197334) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253553.1 CDS pgk NC_016863.1 3197436 3198599 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3197436..3198599) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253554.1 CDS epd NC_016863.1 3198621 3199667 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3198621..3199667) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253555.1 CDS STMUK_3059 NC_016863.1 3200041 3200466 D putative DNA-binding protein 3200041..3200466 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253556.1 CDS STMUK_3060 NC_016863.1 3200492 3201070 D putative inner membrane protein 3200492..3201070 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253557.1 CDS STMUK_3061 NC_016863.1 3201071 3201778 D CbiQ and related transporter; putative ABC-type cobalt transport system permease component 3201071..3201778 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253558.1 CDS STMUK_3062 NC_016863.1 3201766 3202443 D similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type cobalt transport system ATP-binding component 3201766..3202443 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253559.1 CDS STMUK_3063 NC_016863.1 3202437 3203093 D similar to Escherichia coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); putative ABC-type cobalt transport system ATP-binding component 3202437..3203093 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253560.1 CDS tktA NC_016863.1 3203137 3205128 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo; transketolase complement(3203137..3205128) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253561.1 CDS yggG NC_016863.1 3205404 3206162 D contains putative chaperone function; putative Zn-dependent protease 3205404..3206162 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253562.1 CDS speB NC_016863.1 3206263 3207183 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3206263..3207183) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253563.1 CDS STMUK_3067 NC_016863.1 3207388 3208344 R putative hydrolase/acyltransferase complement(3207388..3208344) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253564.1 CDS STMUK_3068 NC_016863.1 3208558 3209031 R putative mannitol dehydrogenase complement(3208558..3209031) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253565.1 CDS STMUK_3069 NC_016863.1 3209070 3210077 R similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); putative malate/L-lactate dehydrogenase complement(3209070..3210077) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253566.1 CDS STMUK_3070 NC_016863.1 3210091 3211107 R similar to Escherichia coli putative oxidoreductase (AAC77314.1); putative zinc-binding dehydrogenase complement(3210091..3211107) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253567.1 CDS STMUK_3071 NC_016863.1 3211110 3212582 R similar to Escherichia coli putative oxidoreductase (AAC75233.1); putative mannitol dehydrogenase complement(3211110..3212582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253568.1 CDS STMUK_3072 NC_016863.1 3213824 3214624 R similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein complement(3213824..3214624) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253569.1 CDS STMUK_3073 NC_016863.1 3214778 3215509 R putative outer membrane lipoprotein complement(3214778..3215509) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253570.1 CDS speA NC_016863.1 3215653 3217629 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3215653..3217629) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253571.1 CDS yqgB NC_016863.1 3217638 3217769 R putative inner membrane protein complement(3217638..3217769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253572.1 CDS STMUK_3076 NC_016863.1 3217903 3218067 D similar to E. coli orf, hypothetical protein(AAC75977.1); Blastp hit to AAC75977.1 (71 aa); putative cytoplasmic protein 3217903..3218067 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253573.1 CDS yqgD NC_016863.1 3218064 3218363 R putative inner membrane protein complement(3218064..3218363) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253574.1 CDS metK NC_016863.1 3218419 3219573 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3218419..3219573 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253575.1 CDS galP NC_016863.1 3220066 3221460 D similar to Escherichia coli galactose-proton symport of transport system (AAC75980.1); MFS family; galactose/proton symporter 3220066..3221460 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253576.1 CDS sprT NC_016863.1 3221539 3222036 D hypothetical protein 3221539..3222036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253577.1 CDS endA NC_016863.1 3222131 3222838 D similar to Escherichia coli DNA-specific endonuclease I (AAC75982.1); DNA-specific endonuclease I 3222131..3222838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253578.1 CDS yggJ NC_016863.1 3222867 3223646 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3222867..3223646 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253579.1 CDS gshB NC_016863.1 3223666 3224613 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3223666..3224613 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253580.1 CDS yqgE NC_016863.1 3224829 3225392 D hypothetical protein 3224829..3225392 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253581.1 CDS yqgF NC_016863.1 3225392 3225808 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3225392..3225808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253582.1 CDS STMUK_3086 NC_016863.1 3225855 3226541 R putative transcriptional regulator complement(3225855..3226541) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253583.1 CDS yggR NC_016863.1 3226673 3227653 R similar to Escherichia coli putative protein transport (AAC75987.1); may be involved in type II secretion; twitching motility protein complement(3226673..3227653) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253584.1 CDS yggS NC_016863.1 3227671 3228375 D putative enzyme with a TIM-barrel fold; hypothetical protein 3227671..3228375 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253585.1 CDS yggT NC_016863.1 3228394 3228960 D similar to Escherichia coli putative resistance protein (AAC75989.1); hypothetical protein 3228394..3228960 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253586.1 CDS yggU NC_016863.1 3228957 3229247 D hypothetical protein 3228957..3229247 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253587.1 CDS yggV NC_016863.1 3229255 3229848 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3229255..3229848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253588.1 CDS yggW NC_016863.1 3229841 3230977 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3229841..3230977 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253589.1 CDS yggM NC_016863.1 3231068 3232075 R similar to Escherichia coli putative alpha helix chain (AAC75993.1); hypothetical protein complement(3231068..3232075) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253590.1 CDS ansB NC_016863.1 3232208 3233254 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(3232208..3233254) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253591.1 CDS yggN NC_016863.1 3233443 3234162 R hypothetical protein complement(3233443..3234162) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253592.1 CDS yggL NC_016863.1 3234212 3234538 R hypothetical protein complement(3234212..3234538) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253593.1 CDS yggH NC_016863.1 3234538 3235257 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3234538..3235257) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253594.1 CDS mutY NC_016863.1 3235412 3236464 D A/G-specific adenine glycosylase (SW:MUTY_SALTY); adenine DNA glycosylase 3235412..3236464 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253595.1 CDS yggX NC_016863.1 3236492 3236767 D hypothetical protein 3236492..3236767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253596.1 CDS mltC NC_016863.1 3236880 3237965 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3236880..3237965 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253597.1 CDS speC NC_016863.1 3238631 3240766 R similar to Escherichia coli ornithine decarboxylase isozyme (AAC76002.1); ornithine decarboxylase complement(3238631..3240766) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253598.1 CDS yqgA NC_016863.1 3241191 3241898 D similar to Escherichia coli putative transport protein (AAC76003.1); putative inner membrane protein 3241191..3241898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253599.1 CDS STMUK_3105 NC_016863.1 3242238 3242672 R putative lactoylglutathione lyase complement(3242238..3242672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253600.1 CDS STMUK_3106 NC_016863.1 3242683 3244008 R similar to Escherichia coli putative coenzyme A transferase (AAC75957.1); putative acetyl-CoA hydrolase complement(3242683..3244008) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253601.1 CDS STMUK_3107 NC_016863.1 3244033 3244560 R similar to Escherichia coli putative aldehyde dehydrogenase (AAC74469.1); putative monoamine oxidase complement(3244033..3244560) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253602.1 CDS STMUK_3108 NC_016863.1 3244584 3245426 R similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); LysR family; putative transcriptional regulator complement(3244584..3245426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253603.1 CDS STMUK_3109 NC_016863.1 3245518 3246396 D putative transcriptional regulator (gi|5852589); LysR family; putative transcriptional regulator 3245518..3246396 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253604.1 CDS STMUK_3110 NC_016863.1 3246444 3248183 R similar to Escherichia coli putative sulfatase (AAC74571.1); putative arylsulfatase complement(3246444..3248183) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253605.1 CDS STMUK_3111 NC_016863.1 3248252 3249436 R similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator complement(3248252..3249436) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253606.1 CDS STMUK_3112 NC_016863.1 3249948 3250631 D similar to Escherichia coli putative regulator (AAC76545.1); contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 3249948..3250631 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253607.1 CDS STMUK_3113 NC_016863.1 3250735 3251292 R putative cytoplasmic protein complement(3250735..3251292) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253608.1 CDS STMUK_3114 NC_016863.1 3251270 3252769 R similar to Escherichia coli proline permease transport protein (AAC73505.1); putative amino acid transporter complement(3251270..3252769) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253609.1 CDS STMUK_3115 NC_016863.1 3252978 3253352 R putative cytoplasmic protein complement(3252978..3253352) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253610.1 CDS STMUK_3116 NC_016863.1 3253367 3254668 R similar to Escherichia coli probable oxidoreductase (AAC74383.1); putative oxidoreductase complement(3253367..3254668) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253611.1 CDS STMUK_3117 NC_016863.1 3254830 3256314 D similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 3254830..3256314 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253612.1 CDS iraD NC_016863.1 3256450 3256830 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein complement(3256450..3256830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253613.1 CDS STMUK_3119 NC_016863.1 3256830 3257315 R putative cytoplasmic protein complement(3256830..3257315) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253614.1 CDS STMUK_3120 NC_016863.1 3258041 3258964 R putative xylanase/chitin deacetylase complement(3258041..3258964) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253615.1 CDS STMUK_3121 NC_016863.1 3259003 3259881 R putative amidohydrolase complement(3259003..3259881) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253616.1 CDS STMUK_3122 NC_016863.1 3260277 3261581 R similar to Escherichia coli transport of hexuronates (AAC76128.1); putative permease complement(3260277..3261581) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253617.1 CDS STMUK_3123 NC_016863.1 3261986 3263170 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3261986..3263170 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253618.1 CDS STMUK_3124 NC_016863.1 3263281 3264753 D similar to Escherichia coli D-mannonate oxidoreductase (AAC77279.1); putative D-mannonate oxidoreductase 3263281..3264753 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253619.1 CDS STMUK_3125 NC_016863.1 3264765 3266177 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3264765..3266177 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253620.1 CDS STMUK_3126 NC_016863.1 3266477 3267535 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3266477..3267535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253621.1 CDS gsp NC_016863.1 3268205 3270061 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3268205..3270061) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253622.1 CDS yghU NC_016863.1 3270288 3271154 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3270288..3271154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253623.1 CDS STMUK_3129 NC_016863.1 3271222 3271932 R molybdate ABC transporter substrate-binding protein complement(3271222..3271932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253624.1 CDS STMUK_3130 NC_016863.1 3271932 3272984 R putative periplasmic ferrichrome-binding protein complement(3271932..3272984) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253625.1 CDS hybG NC_016863.1 3273060 3273308 R similar to Escherichia coli hydrogenase-2 chaperone-like protein; may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); hydrogenase 2 accessory protein HypG complement(3273060..3273308) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253626.1 CDS hypA NC_016863.1 3273336 3273677 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3273336..3273677) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253627.1 CDS hybE NC_016863.1 3273670 3274158 R similar to Escherichia coli member of hyb operon (AAC76028.1); hydrogenase 2-specific chaperone complement(3273670..3274158) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253628.1 CDS hybD NC_016863.1 3274151 3274645 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3274151..3274645) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253629.1 CDS hybC NC_016863.1 3274645 3276348 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3274645..3276348) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253630.1 CDS hybB NC_016863.1 3276345 3277523 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit complement(3276345..3277523) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253631.1 CDS hybA NC_016863.1 3277513 3278499 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(3277513..3278499) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253632.1 CDS hypO NC_016863.1 3278502 3279620 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3278502..3279620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253633.1 CDS yghW NC_016863.1 3279810 3280097 R putative cytoplasmic protein complement(3279810..3280097) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253634.1 CDS STMUK_3140 NC_016863.1 3280182 3281825 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3280182..3281825) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253635.1 CDS yqhA NC_016863.1 3282132 3282626 R hypothetical protein complement(3282132..3282626) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253636.1 CDS STMUK_3142 NC_016863.1 3282906 3283421 R putative ATP-dependent RNA helicase-like protein complement(3282906..3283421) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253637.1 CDS STMUK_3143 NC_016863.1 3283513 3283923 D putative cytoplasmic protein 3283513..3283923 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253638.1 CDS STMUK_3144 NC_016863.1 3283910 3284314 D putative cytoplasmic protein 3283910..3284314 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253639.1 CDS yghA NC_016863.1 3284438 3285322 D similar to Escherichia coli putative oxidoreductase (AAC76039.1); oxidoreductase 3284438..3285322 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253640.1 CDS exbD NC_016863.1 3285435 3285860 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3285435..3285860) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253641.1 CDS exbB NC_016863.1 3285867 3286601 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3285867..3286601) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253642.1 CDS STMUK_3148 NC_016863.1 3286594 3286743 R putative inner membrane protein complement(3286594..3286743) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253643.1 CDS metC NC_016863.1 3286853 3288040 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3286853..3288040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253644.1 CDS yghB NC_016863.1 3288180 3288839 D hypothetical protein in metC 3'region (SW:YGHB_SALTY); DedA family; hypothetical protein 3288180..3288839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253645.1 CDS yqhC NC_016863.1 3288903 3289820 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76046.1); AraC/XylS family; putative transcriptional regulator complement(3288903..3289820) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253646.1 CDS yqhD NC_016863.1 3289995 3291158 D similar to Escherichia coli putative oxidoreductase (AAC76047.1); putative alcohol dehydrogenase 3289995..3291158 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253647.1 CDS dkgA NC_016863.1 3291264 3292091 D methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3291264..3292091 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253648.1 CDS STMUK_3154 NC_016863.1 3292282 3293742 D similar to Escherichia coli putative membrane pump protein (AAC73857.1); putative cation transporter 3292282..3293742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253649.1 CDS STMUK_3155 NC_016863.1 3293787 3294242 D Ap4A; putative diadenosine tetraphosphatehydrolase 3293787..3294242 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253650.1 CDS STMUK_3156 NC_016863.1 3294400 3294594 R similar to hypothetical protein SPC_3240 (Pid: YP_002638766.1).; hypothetical protein complement(3294400..3294594) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253651.1 CDS ygiR NC_016863.1 3294797 3296968 R putative FeS oxidoreductase family 2; hypothetical protein complement(3294797..3296968) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253652.1 CDS STMUK_3158 NC_016863.1 3297456 3298439 D similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3297456..3298439 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253653.1 CDS STMUK_3159 NC_016863.1 3298481 3298963 D putative inner membrane protein 3298481..3298963 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253654.1 CDS ygiK NC_016863.1 3298974 3300281 D hypothetical 46.1 kDa protein in plsC 3'region (SW:YGIK_SALTY); integral membrane protein; putative transporter 3298974..3300281 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253655.1 CDS sufI NC_016863.1 3300326 3301738 R SufI protein precursor (SW:SUFI_SALTY); putative periplasmic protein; repressor protein for FtsI complement(3300326..3301738) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253656.1 CDS plsC NC_016863.1 3301812 3302549 R 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3301812..3302549) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253657.1 CDS parC NC_016863.1 3302806 3305064 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3302806..3305064) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253658.1 CDS STMUK_3164 NC_016863.1 3305175 3306041 R AraC family; helix-turn-helix; putative regulatory protein complement(3305175..3306041) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253659.1 CDS ygiW NC_016863.1 3306113 3306505 R putative outer membrane protein complement(3306113..3306505) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253660.1 CDS ygiX NC_016863.1 3306657 3307316 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3306657..3307316 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253661.1 CDS ygiY NC_016863.1 3307313 3308662 D similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); regulatory protein; sensor protein QseC 3307313..3308662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253662.1 CDS mdaB NC_016863.1 3308769 3309350 D similar to Escherichia coli modulator of drug activity B (AAC76064.1); drug modulator; NADPH-specific quinone oxidoreductase 3308769..3309350 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253663.1 CDS ygiN NC_016863.1 3309382 3309696 D putative cytoplasmic protein 3309382..3309696 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253664.1 CDS parE NC_016863.1 3309821 3311713 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3309821..3311713) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253665.1 CDS yqiA NC_016863.1 3311741 3312322 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(3311741..3312322) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253666.1 CDS icc NC_016863.1 3312322 3313149 R similar to Escherichia coli regulator of lacZ (AAC76068.1); cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3312322..3313149) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253667.1 CDS yqiB NC_016863.1 3313174 3313596 R similar to Escherichia coli putative enzyme (AAC76069.1); hypothetical protein complement(3313174..3313596) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253668.1 CDS nudF NC_016863.1 3313593 3314225 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(3313593..3314225) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253669.1 CDS tolC NC_016863.1 3314426 3315901 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3314426..3315901 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253670.1 CDS ygiB NC_016863.1 3316114 3316785 D hypothetical protein 3316114..3316785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253671.1 CDS ygiC NC_016863.1 3316791 3317954 D similar to Escherichia coli putative synthetase/amidase (AAC76074.1); putative glutathionylspermidine synthase 3316791..3317954 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253672.1 CDS ygiD NC_016863.1 3318016 3318846 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein complement(3318016..3318846) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253673.1 CDS ygiE NC_016863.1 3318945 3319718 D zinc transporter ZupT 3318945..3319718 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253674.1 CDS STMUK_3180 NC_016863.1 3319785 3319961 R similar to hypothetical protein SPC_3265 (Pid: YP_002638791.1).; hypothetical protein complement(3319785..3319961) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253675.1 CDS STMUK_3181 NC_016863.1 3320361 3322157 D putative arylsulfate sulfotransferase 3320361..3322157 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253676.1 CDS STMUK_3182 NC_016863.1 3322177 3322848 D thiol-disulfide isomerase and thioredoxin; putative disulfide bond formation protein 3322177..3322848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253677.1 CDS STMUK_3183 NC_016863.1 3322863 3323540 D putative disulfide oxidoreductase 3322863..3323540 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253678.1 CDS ribB NC_016863.1 3323711 3324364 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3323711..3324364) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253679.1 CDS yqiC NC_016863.1 3324741 3325100 D putative cytoplasmic protein 3324741..3325100 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253680.1 CDS glgS NC_016863.1 3325174 3325383 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3325174..3325383) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253681.1 CDS STMUK_3187 NC_016863.1 3325641 3326261 D similar to Escherichia coli putative oxidoreductase (AAC76086.1); putative inner membrane protein 3325641..3326261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253682.1 CDS yqiK NC_016863.1 3326280 3327959 D similar to Escherichia coli putative membrane protein (AAC76087.1); hypothetical protein 3326280..3327959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253683.1 CDS rfaE NC_016863.1 3328419 3329852 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3328419..3329852) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253684.1 CDS glnE NC_016863.1 3329900 3332743 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3329900..3332743) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253685.1 CDS ygiF NC_016863.1 3332861 3334162 R putative cytoplasmic protein complement(3332861..3334162) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253686.1 CDS ygiM NC_016863.1 3334404 3335018 D contains putative SH3 domain protein; putative signal transduction protein 3334404..3335018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253687.1 CDS cca NC_016863.1 3335081 3336322 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the pro; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3335081..3336322 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253688.1 CDS uppP NC_016863.1 3336427 3337251 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3336427..3337251) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253689.1 CDS folB NC_016863.1 3337346 3337708 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3337346..3337708) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253690.1 CDS ygiH NC_016863.1 3337812 3338423 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3337812..3338423 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253691.1 CDS gcp NC_016863.1 3338674 3339687 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteur; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3338674..3339687) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253692.1 CDS rpsU NC_016863.1 3339915 3340130 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3339915..3340130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253693.1 CDS dnaG NC_016863.1 3340366 3342111 D synthesizes RNA primers at the replication forks; DNA primase 3340366..3342111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253694.1 CDS rpoD NC_016863.1 3342126 3344108 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3342126..3344108 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253695.1 CDS mug NC_016863.1 3344232 3344738 R G/U mismatch-specific DNA glycosylase complement(3344232..3344738) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253696.1 CDS yqjH NC_016863.1 3345019 3345786 R putative transporter complement(3345019..3345786) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253697.1 CDS yqjI NC_016863.1 3346018 3346665 D putative transcriptional regulator 3346018..3346665 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253698.1 CDS STMUK_3205 NC_016863.1 3346662 3348227 R similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein complement(3346662..3348227) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253699.1 CDS aer NC_016863.1 3348615 3350135 R similar to Escherichia coli aerotaxis sensor receptor; flavoprotein (AAC76107.1); senses cellular redox state or proton motive force; aerotaxis sensor receptor complement(3348615..3350135) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253700.1 CDS oat NC_016863.1 3350655 3351944 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3350655..3351944 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253701.1 CDS fadH NC_016863.1 3352115 3354133 D similar to Escherichia coli putative NADPH dehydrogenase (AAC76116.1); 2,4-dienoyl-CoA reductase 3352115..3354133 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253702.1 CDS ygjO NC_016863.1 3354214 3355350 R similar to Escherichia coli putative enzyme (AAC76119.1); putative methyltransferase complement(3354214..3355350) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253703.1 CDS ygjP NC_016863.1 3355436 3355933 D putative metal-dependent hydrolase 3355436..3355933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253704.1 CDS ygjQ NC_016863.1 3356085 3356777 D hypothetical protein 3356085..3356777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253705.1 CDS ygjR NC_016863.1 3356866 3357864 D putative dehydrogenase 3356866..3357864 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253706.1 CDS ygjT NC_016863.1 3358137 3359105 D similar to Escherichia coli putative transport protein (AAC76123.1); putative tellurite resistance protein 3358137..3359105 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253707.1 CDS ygjU NC_016863.1 3359360 3360604 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3359360..3360604 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253708.1 CDS yqjA NC_016863.1 3361054 3361716 D DedA family; hypothetical protein 3361054..3361716 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253709.1 CDS yqjB NC_016863.1 3361720 3362103 D hypothetical protein 3361720..3362103 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253710.1 CDS yqjC NC_016863.1 3362248 3362616 D hypothetical protein 3362248..3362616 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253711.1 CDS yqjD NC_016863.1 3362658 3362963 D putative inner membrane protein 3362658..3362963 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253712.1 CDS yqjE NC_016863.1 3362966 3363364 D putative inner membrane protein 3362966..3363364 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253713.1 CDS yqjK NC_016863.1 3363361 3363660 D putative inner membrane protein 3363361..3363660 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253714.1 CDS yqjF NC_016863.1 3363805 3364290 D hypothetical protein 3363805..3364290 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253715.1 CDS yqjG NC_016863.1 3364358 3365344 D similar to Escherichia coli putative transferase (AAC76137.1); putative glutathione S-transferase 3364358..3365344 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253716.1 CDS yhaH NC_016863.1 3365468 3365833 D similar to Escherichia coli putative cytochrome (AAC76138.1); putative inner membrane protein 3365468..3365833 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253717.1 CDS yhaJ NC_016863.1 3365872 3366768 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76140.1); LysR family; putative transcriptional regulator complement(3365872..3366768) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253718.1 CDS yhaK NC_016863.1 3366873 3367574 D putative cytoplasmic protein 3366873..3367574 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253719.1 CDS yhaL NC_016863.1 3367598 3367762 D putative cytoplasmic protein 3367598..3367762 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253720.1 CDS yhaN NC_016863.1 3367875 3369185 R putative inner membrane protein complement(3367875..3369185) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253721.1 CDS yhaO NC_016863.1 3369211 3370542 R similar to Escherichia coli putative transport system permease protein (AAC76145.1); HAAAP family; putative transport protein complement(3369211..3370542) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253722.1 CDS tdcG NC_016863.1 3370858 3372222 R similar to Escherichia coli L-serine dehydratase; deaminase L-SD2 (AAC75839.1); L-serine deaminase complement(3370858..3372222) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253723.1 CDS tdcE NC_016863.1 3372292 3374586 R similar to Escherichia coli probable formate acetyltransferase 3 (AAC76149.1); pyruvate formate-lyase 4/2-ketobutyrate formate-lyase complement(3372292..3374586) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253724.1 CDS tdcD NC_016863.1 3374620 3375828 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3374620..3375828) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253725.1 CDS tdcC NC_016863.1 3375894 3377225 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3375894..3377225) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253726.1 CDS tdcB NC_016863.1 3377246 3378235 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(3377246..3378235) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253727.1 CDS tdcA NC_016863.1 3378333 3379271 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3378333..3379271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253728.1 CDS garK NC_016863.1 3381070 3382215 R glycerate kinase complement(3381070..3382215) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253729.1 CDS garR NC_016863.1 3382313 3383203 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3382313..3383203) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253730.1 CDS garL NC_016863.1 3383229 3383999 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3383229..3383999) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253731.1 CDS garD NC_016863.1 3384529 3386100 D similar to Escherichia coli putative hydrolase (AAC76162.1); galactarate dehydratase 3384529..3386100 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253732.1 CDS STMUK_3239 NC_016863.1 3386340 3387287 R similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase complement(3386340..3387287) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253733.1 CDS agaR NC_016863.1 3387298 3388131 R similar to Escherichia coli putative DeoR-type transcriptional regulator of Aga operon (AAC76165.1); DeoR family; AGA operon transcriptional repressor complement(3387298..3388131) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253734.1 CDS gatY NC_016863.1 3388465 3389319 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase 3388465..3389319 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253735.1 CDS STMUK_3242 NC_016863.1 3389330 3390244 D similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); putative fructose-1-phosphate kinase 3389330..3390244 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253736.1 CDS STMUK_3245 NC_016863.1 3391106 3392149 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3391106..3392149 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253737.1 CDS STMUK_3246 NC_016863.1 3392260 3393033 D similar to Escherichia coli split galactitol utilization operon repressor (AAC75148.1); galactitol utilization operon transcriptional repressor 3392260..3393033 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253738.1 CDS yraL NC_016863.1 3393191 3394054 R putative methyltransferase complement(3393191..3394054) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253739.1 CDS yraM NC_016863.1 3394118 3396160 D similar to Escherichia coli putative glycosylase (AAC76181.1); putative transglycosylase 3394118..3396160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253740.1 CDS yraN NC_016863.1 3396118 3396513 D hypothetical protein 3396118..3396513 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253741.1 CDS yraO NC_016863.1 3396535 3397125 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3396535..3397125 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253742.1 CDS yraP NC_016863.1 3397135 3397710 D similar to Escherichia coli putative periplasmic protein (AAC76184.1); hypothetical protein 3397135..3397710 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253743.1 CDS yraR NC_016863.1 3397777 3398445 R putative nucleoside-diphosphate-sugar epimerase complement(3397777..3398445) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253744.1 CDS yhbO NC_016863.1 3398543 3399061 D putative intracellular proteinase 3398543..3399061 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253745.1 CDS yhbP NC_016863.1 3399041 3399484 R hypothetical protein complement(3399041..3399484) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253746.1 CDS yhbQ NC_016863.1 3399522 3399839 D GIY-YIG nuclease superfamily protein 3399522..3399839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253747.1 CDS yhbS NC_016863.1 3399826 3400329 R putative ABC superfamily membrane protein; putative transport protein complement(3399826..3400329) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253748.1 CDS yhbT NC_016863.1 3400323 3400847 R putative lipid carrier protein complement(3400323..3400847) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253749.1 CDS yhbU NC_016863.1 3401064 3402059 D similar to Escherichia coli putative collagenase (AAC76192.1); putative protease 3401064..3402059 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253750.1 CDS yhbV NC_016863.1 3402050 3402946 D putative protease 3402050..3402946 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253751.1 CDS yhbW NC_016863.1 3403124 3404131 D similar to Escherichia coli putative enzyme (AAC76194.1); hypothetical protein 3403124..3404131 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253752.1 CDS STMUK_3261 NC_016863.1 3404109 3404828 R putative inner membrane protein complement(3404109..3404828) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253753.1 CDS STMUK_3262 NC_016863.1 3404987 3405517 D putative cytoplasmic protein 3404987..3405517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253754.1 CDS mtr NC_016863.1 3405578 3406822 R tryptophan transporter of high affinity; tryptophan permease complement(3405578..3406822) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253755.1 CDS deaD NC_016863.1 3406976 3408916 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3406976..3408916) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253756.1 CDS nlpI NC_016863.1 3409044 3409928 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3409044..3409928) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253757.1 CDS pnp NC_016863.1 3410038 3412173 R similar to Escherichia coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); member of mRNA degradosome; polynucleotide phosphorylase/polyadenylase complement(3410038..3412173) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253758.1 CDS rpsO NC_016863.1 3412415 3412684 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3412415..3412684) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253759.1 CDS truB NC_016863.1 3412835 3413779 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3412835..3413779) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253760.1 CDS rbfA NC_016863.1 3413779 3414180 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3413779..3414180) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253761.1 CDS infB NC_016863.1 3414401 3417079 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3414401..3417079) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253762.1 CDS nusA NC_016863.1 3417104 3418606 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3417104..3418606) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253763.1 CDS yhbC NC_016863.1 3418634 3419056 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3418634..3419056) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253764.1 CDS argG NC_016863.1 3419648 3421057 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3419648..3421057 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253765.1 CDS STMUK_3275 NC_016863.1 3421143 3422207 R putative cytoplasmic protein complement(3421143..3422207) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253766.1 CDS secG NC_016863.1 3422643 3422975 R similar to Escherichia coli protein export; membrane protein (AAC76207.1); IISP family; auxillary membrane component; preprotein translocase subunit SecG complement(3422643..3422975) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253767.1 CDS glmM NC_016863.1 3423198 3424535 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3423198..3424535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253768.1 CDS folP NC_016863.1 3424528 3425376 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase complement(3424528..3425376) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253769.1 CDS tnpA_6 NC_016863.1 3425523 3425981 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(3425523..3425981) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253770.1 CDS ftsH NC_016863.1 3426192 3428126 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3426192..3428126) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253771.1 CDS rrmJ NC_016863.1 3428230 3428856 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3428230..3428856) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253772.1 CDS yhbY NC_016863.1 3428944 3429276 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3428944..3429276 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253773.1 CDS greA NC_016863.1 3429432 3429908 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary com; transcription elongation factor GreA complement(3429432..3429908) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253774.1 CDS STMUK_3285 NC_016863.1 3429962 3430063 R similar to hypothetical protein SeSA_A3490 (Pid: YP_002116248.1).; hypothetical protein complement(3429962..3430063) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253775.1 CDS dacB NC_016863.1 3430156 3431589 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chain; D-alanyl-D-alanine carboxypeptidase 3430156..3431589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253776.1 CDS obgE NC_016863.1 3431721 3432893 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3431721..3432893) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253777.1 CDS STMUK_3288 NC_016863.1 3432909 3433874 R similar to hypothetical protein STY3481 (Pid: NP_457681.1).; hypothetical protein complement(3432909..3433874) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253778.1 CDS rpmA NC_016863.1 3434004 3434261 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3434004..3434261) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253779.1 CDS rplU NC_016863.1 3434281 3434592 R similar to Escherichia coli 50S ribosomal subunit protein L21 (AAC76218.1); 50S ribosomal protein L21 complement(3434281..3434592) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253780.1 CDS ispB NC_016863.1 3434850 3435821 D similar to Escherichia coli octaprenyl diphosphate synthase (AAC76219.1); octaprenyl diphosphate synthase 3434850..3435821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253781.1 CDS nlp NC_016863.1 3436053 3436340 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3436053..3436340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253782.1 CDS murA NC_016863.1 3436398 3437657 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3436398..3437657) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253783.1 CDS yrbA NC_016863.1 3437711 3438004 R BolA family; putative transcriptional regulator complement(3437711..3438004) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253784.1 CDS yrbB NC_016863.1 3438153 3438449 R putative STAS domain; hypothetical protein complement(3438153..3438449) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253785.1 CDS yrbC NC_016863.1 3438449 3439084 R putative ABC superfamily; putative transport protein complement(3438449..3439084) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253786.1 CDS yrbD NC_016863.1 3439103 3439654 R putative ABC superfamily binding protein; putative transport protein complement(3439103..3439654) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253787.1 CDS yrbE NC_016863.1 3439659 3440441 R putative ABC superfamily membrane protein; putative transport protein complement(3439659..3440441) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253788.1 CDS yrbF NC_016863.1 3440449 3441261 R ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF complement(3440449..3441261) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253789.1 CDS yrbG NC_016863.1 3441474 3442451 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 3441474..3442451 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253790.1 CDS yrbH NC_016863.1 3442465 3443451 D similar to Escherichia coli putative isomerase (AAC76229.1); polysialic acid capsule expression protein; D-arabinose 5-phosphate isomerase 3442465..3443451 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253791.1 CDS yrbI NC_016863.1 3443472 3444038 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3443472..3444038 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253792.1 CDS yrbK NC_016863.1 3444035 3444610 D hypothetical protein 3444035..3444610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253793.1 CDS yhbN NC_016863.1 3444579 3445133 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3444579..3445133 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253794.1 CDS yhbG NC_016863.1 3445140 3445865 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC76233.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YhbG 3445140..3445865 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253795.1 CDS rpoN NC_016863.1 3445913 3447346 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizo; RNA polymerase factor sigma-54 3445913..3447346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253796.1 CDS yhbH NC_016863.1 3447369 3447656 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigm; putative sigma(54) modulation protein 3447369..3447656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253797.1 CDS ptsN NC_016863.1 3447774 3448265 D similar to Escherichia coli phosphotransferase system enzyme IIA; regulates N metabolism (AAC76236.1); PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3447774..3448265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253798.1 CDS yhbJ NC_016863.1 3448311 3449165 D putative kinase; contains putative P-loop; hypothetical protein 3448311..3449165 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253799.1 CDS ptsO NC_016863.1 3449162 3449434 D similar to Escherichia coli phosphocarrier protein HPr-like NPr; nitrogen-related; exchanges phosphate with Enzyme I Hpr (AAC76238.1); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3449162..3449434 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253800.1 CDS yrbL NC_016863.1 3449683 3450315 D hypothetical protein 3449683..3450315 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253801.1 CDS mtgA NC_016863.1 3450390 3451118 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3450390..3451118) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253802.1 CDS yhbL NC_016863.1 3451115 3451768 R similar to Escherichia coli sigma cross-reacting protein 27A (AAC76241.1); SCRP-27A; isoprenoid biosynthesis protein with amidotransferase-like domain complement(3451115..3451768) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253803.1 CDS arcB NC_016863.1 3451995 3454331 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(3451995..3454331) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253804.1 CDS yhcC NC_016863.1 3454425 3455354 R putative FeS oxidoreductase complement(3454425..3455354) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253805.1 CDS gltB NC_016863.1 3456026 3460486 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3456026..3460486 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253806.1 CDS gltD NC_016863.1 3460496 3461914 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3460496..3461914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253807.1 CDS yhcG NC_016863.1 3462121 3463224 D putative cytoplasmic protein 3462121..3463224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253808.1 CDS codB NC_016863.1 3463341 3464594 D similar to Escherichia coli cytosine permease/transport (AAC73439.1); cytosine permease 3463341..3464594 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253809.1 CDS STMUK_3320 NC_016863.1 3464581 3465861 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3464581..3465861 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253810.1 CDS yhcH NC_016863.1 3465944 3466411 R putative cytoplasmic protein complement(3465944..3466411) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253811.1 CDS nanK NC_016863.1 3466408 3467283 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3466408..3467283) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253812.1 CDS nanE NC_016863.1 3467280 3467969 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3467280..3467969) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253813.1 CDS nanT NC_016863.1 3468016 3469506 R similar to Escherichia coli sialic acid transporter (AAC76256.1); MFS family; putative sialic acid transporter complement(3468016..3469506) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253814.1 CDS nanA NC_016863.1 3469622 3470515 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3469622..3470515) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253815.1 CDS yhcK NC_016863.1 3470650 3471441 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3470650..3471441) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253816.1 CDS sspB NC_016863.1 3471550 3472050 R similar to Escherichia coli stringent starvation protein B (AAC76260.1); ClpXP protease specificity-enhancing factor complement(3471550..3472050) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253817.1 CDS sspA NC_016863.1 3472056 3472694 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3472056..3472694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253818.1 CDS STMUK_3329 NC_016863.1 3472957 3473709 R putative cytoplasmic protein complement(3472957..3473709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253819.1 CDS rpsI NC_016863.1 3473909 3474301 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3473909..3474301) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253820.1 CDS rplM NC_016863.1 3474317 3474745 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3474317..3474745) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253821.1 CDS yhcM NC_016863.1 3475048 3476172 R putative ATPase complement(3475048..3476172) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253822.1 CDS yhcB NC_016863.1 3476359 3476763 D cytochrome d ubiquinol oxidase subunit III 3476359..3476763 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253823.1 CDS degQ NC_016863.1 3476920 3478287 D similar to Escherichia coli serine endoprotease (AAC76266.1); serine endoprotease 3476920..3478287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253824.1 CDS degS NC_016863.1 3478380 3479450 D similar to Escherichia coli protease (AAC76267.1); serine endoprotease 3478380..3479450 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253825.1 CDS STMUK_3336 NC_016863.1 3479484 3480215 R similar to STM0063; putative inner membrane protein complement(3479484..3480215) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253826.1 CDS oadB NC_016863.1 3480235 3481536 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative sodium ion pump oxaloacetate decarboxylase beta chain complement(3480235..3481536) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253827.1 CDS oadA NC_016863.1 3481552 3483327 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3481552..3483327) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253828.1 CDS oadG NC_016863.1 3483343 3483597 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3483343..3483597) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253829.1 CDS STMUK_3340 NC_016863.1 3483753 3484370 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3483753..3484370) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253830.1 CDS STMUK_3341 NC_016863.1 3484370 3485269 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3484370..3485269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253831.1 CDS STMUK_3342 NC_016863.1 3485302 3486570 R similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter complement(3485302..3486570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253832.1 CDS STMUK_3343 NC_016863.1 3486781 3487446 R GntR family; putative regulatory protein complement(3486781..3487446) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253833.1 CDS STMUK_3344 NC_016863.1 3487433 3488062 R GntR family; putative regulatory protein complement(3487433..3488062) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253834.1 CDS mdh NC_016863.1 3488182 3489120 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3488182..3489120) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253835.1 CDS argR NC_016863.1 3489534 3490004 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3489534..3490004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253836.1 CDS yhcN NC_016863.1 3490369 3490632 D putative outer membrane protein 3490369..3490632 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253837.1 CDS STMUK_3348 NC_016863.1 3490736 3491002 D hypothetical protein 3490736..3491002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253838.1 CDS yhcO NC_016863.1 3491062 3491334 R putative cytoplasmic protein complement(3491062..3491334) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253839.1 CDS yhcP NC_016863.1 3491506 3493473 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(3491506..3493473) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253840.1 CDS yhcQ NC_016863.1 3493479 3494411 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA complement(3493479..3494411) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253841.1 CDS yhcR NC_016863.1 3494419 3494622 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(3494419..3494622) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253842.1 CDS yhcS NC_016863.1 3494804 3495733 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76275.1); LysR family; putative DNA-binding transcriptional regulator 3494804..3495733 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253843.1 CDS tldD NC_016863.1 3495856 3497301 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(3495856..3497301) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253844.1 CDS yhdP NC_016863.1 3497446 3501246 R hypothetical protein complement(3497446..3501246) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253845.1 CDS cafA NC_016863.1 3501353 3502822 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(3501353..3502822) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253846.1 CDS maf NC_016863.1 3502812 3503405 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3502812..3503405) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253847.1 CDS mreD NC_016863.1 3503414 3503905 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3503414..3503905) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253848.1 CDS mreC NC_016863.1 3503905 3504957 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3503905..3504957) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253849.1 CDS mreB NC_016863.1 3505022 3506065 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3505022..3506065) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253850.1 CDS yhdA NC_016863.1 3506373 3508313 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3506373..3508313) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253851.1 CDS yhdH NC_016863.1 3508517 3509491 D similar to Escherichia coli putative dehydrogenase (AAC76285.1); putative oxidoreductase 3508517..3509491 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253852.1 CDS STMUK_3363 NC_016863.1 3509604 3510608 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3509604..3510608 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253853.1 CDS STMUK_3364 NC_016863.1 3510609 3511208 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 3510609..3511208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253854.1 CDS accB NC_016863.1 3511601 3512071 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3511601..3512071 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253855.1 CDS accC NC_016863.1 3512082 3513431 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3512082..3513431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253856.1 CDS yhdT NC_016863.1 3513540 3513782 D hypothetical protein 3513540..3513782 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253857.1 CDS panF NC_016863.1 3513772 3515223 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3513772..3515223 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253858.1 CDS prmA NC_016863.1 3515235 3516116 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3515235..3516116 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253859.1 CDS yhdG NC_016863.1 3516777 3517742 D putative TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3516777..3517742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253860.1 CDS fis NC_016863.1 3517768 3518064 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3517768..3518064 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253861.1 CDS yhdJ NC_016863.1 3518150 3519034 D similar to Escherichia coli putative methyltransferase (AAC76294.1); putative methyltransferase 3518150..3519034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253862.1 CDS yhdU NC_016863.1 3519117 3519281 D hypothetical protein 3519117..3519281 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253863.1 CDS STMUK_3374 NC_016863.1 3519432 3521531 D membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; putative signal transduction protein 3519432..3521531 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253864.1 CDS envR NC_016863.1 3521534 3522196 R similar to Escherichia coli putative transcriptional regulator (AAC76296.1); regulator for envCD; acrEF; TetR/AcrR family; DNA-binding transcriptional regulator EnvR complement(3521534..3522196) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253865.1 CDS acrE NC_016863.1 3522610 3523767 D similar to Escherichia coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); acriflavine resistance protein E 3522610..3523767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253866.1 CDS acrF NC_016863.1 3523779 3526892 D similar to Escherichia coli integral transmembrane protein; acridine resistance protein F (AAC76298.1); RND family; multidrug transport protein 3523779..3526892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253867.1 CDS yhdV NC_016863.1 3527128 3527349 D putative outer membrane lipoprotein 3527128..3527349 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253868.1 CDS yrdA NC_016863.1 3533947 3534501 D similar to Escherichia coli putative transferase (AAC76304.1); putative ferripyochelin-binding protein 3533947..3534501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253869.1 CDS yrdB NC_016863.1 3534477 3534734 R hypothetical protein complement(3534477..3534734) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253870.1 CDS aroE NC_016863.1 3534731 3535549 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3534731..3535549) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253871.1 CDS yrdC NC_016863.1 3535554 3536126 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor complement(3535554..3536126) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253872.1 CDS yrdD NC_016863.1 3536131 3536673 R similar to Escherichia coli putative DNA topoisomerase (AAC76308.1); putative DNA topoisomerase complement(3536131..3536673) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253873.1 CDS smg NC_016863.1 3536700 3537173 R hypothetical protein complement(3536700..3537173) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253874.1 CDS smf NC_016863.1 3537145 3538269 R similar to Escherichia coli orf; fragment 1 (AAC76311.1); putative protein involved in DNA uptake; DNA protecting protein DprA complement(3537145..3538269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253875.1 CDS def NC_016863.1 3538401 3538910 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3538401..3538910 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253876.1 CDS fmt NC_016863.1 3538926 3539873 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3538926..3539873 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253877.1 CDS sun NC_016863.1 3539925 3541214 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3539925..3541214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253878.1 CDS sapG NC_016863.1 3541236 3542612 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3541236..3542612 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253879.1 CDS mscL NC_016863.1 3542754 3543167 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3542754..3543167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253880.1 CDS STMUK_3397 NC_016863.1 3543103 3543372 R putative cytoplasmic protein complement(3543103..3543372) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253881.1 CDS zntR NC_016863.1 3543430 3543855 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3543430..3543855) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253882.1 CDS yhdN NC_016863.1 3543866 3544234 R hypothetical protein complement(3543866..3544234) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253883.1 CDS rplQ NC_016863.1 3544342 3544725 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3544342..3544725) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253884.1 CDS rpoA NC_016863.1 3544766 3545755 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3544766..3545755) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253885.1 CDS rpsD NC_016863.1 3545781 3546401 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic; 30S ribosomal protein S4 complement(3545781..3546401) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253886.1 CDS rpsK NC_016863.1 3546435 3546824 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3546435..3546824) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253887.1 CDS rpsM NC_016863.1 3546841 3547197 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3546841..3547197) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253888.1 CDS rpmJ NC_016863.1 3547344 3547460 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc io; 50S ribosomal protein L36 complement(3547344..3547460) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253889.1 CDS secY NC_016863.1 3547492 3548823 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3547492..3548823) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253890.1 CDS rplO NC_016863.1 3548831 3549265 R late assembly protein; 50S ribosomal protein L15 complement(3548831..3549265) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253891.1 CDS rpmD NC_016863.1 3549269 3549448 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3549269..3549448) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253892.1 CDS rpsE NC_016863.1 3549452 3549955 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3549452..3549955) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253893.1 CDS rplR NC_016863.1 3549970 3550323 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3549970..3550323) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253894.1 CDS rplF NC_016863.1 3550333 3550866 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resist; 50S ribosomal protein L6 complement(3550333..3550866) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253895.1 CDS rpsH NC_016863.1 3550879 3551271 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3550879..3551271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253896.1 CDS rpsN NC_016863.1 3551305 3551610 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are prese; 30S ribosomal protein S14 complement(3551305..3551610) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253897.1 CDS rplE NC_016863.1 3551625 3552164 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3551625..3552164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253898.1 CDS rplX NC_016863.1 3552179 3552493 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3552179..3552493) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253899.1 CDS rplN NC_016863.1 3552504 3552875 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3552504..3552875) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253900.1 CDS rpsQ NC_016863.1 3553039 3553293 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3553039..3553293) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253901.1 CDS rpmC NC_016863.1 3553293 3553484 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3553293..3553484) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253902.1 CDS rplP NC_016863.1 3553484 3553894 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3553484..3553894) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253903.1 CDS rpsC NC_016863.1 3553907 3554608 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3553907..3554608) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253904.1 CDS rplV NC_016863.1 3554626 3554958 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase; 50S ribosomal protein L22 complement(3554626..3554958) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253905.1 CDS rpsS NC_016863.1 3554973 3555251 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3554973..3555251) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253906.1 CDS rplB NC_016863.1 3555268 3556089 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3555268..3556089) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253907.1 CDS rplW NC_016863.1 3556107 3556409 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3556107..3556409) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253908.1 CDS rplD NC_016863.1 3556406 3557011 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3556406..3557011) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253909.1 CDS rplC NC_016863.1 3557022 3557651 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3557022..3557651) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253910.1 CDS nusE NC_016863.1 3557684 3557995 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in; 30S ribosomal protein S10 complement(3557684..3557995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253911.1 CDS hopD NC_016863.1 3558375 3558842 D similar to Escherichia coli leader peptidase; integral membrane protein (AAC76360.1); leader peptidase HopD 3558375..3558842 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253912.1 CDS bfr NC_016863.1 3558839 3559315 R iron storage protein; bacterioferritin complement(3558839..3559315) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253913.1 CDS bfd NC_016863.1 3559388 3559582 R regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin complement(3559388..3559582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253914.1 CDS tuf NC_016863.1 3559767 3560951 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promot; elongation factor Tu complement(3559767..3560951) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253915.1 CDS fusA NC_016863.1 3561023 3563137 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3561023..3563137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253916.1 CDS rpsG NC_016863.1 3563234 3563704 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3563234..3563704) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253917.1 CDS rpsL NC_016863.1 3563800 3564174 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the oth; 30S ribosomal protein S12 complement(3563800..3564174) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253918.1 CDS yheL NC_016863.1 3564300 3564587 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(3564300..3564587) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253919.1 CDS yheM NC_016863.1 3564595 3564951 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(3564595..3564951) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253920.1 CDS yheN NC_016863.1 3564951 3565337 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(3564951..3565337) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253921.1 CDS yheO NC_016863.1 3565337 3566059 R putative regulatory protein complement(3565337..3566059) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253922.1 CDS fkpA NC_016863.1 3566336 3567154 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3566336..3567154) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253923.1 CDS slyX NC_016863.1 3567374 3567592 D similar to Escherichia coli host factor for lysis of phiX174 infection (AAC76373.1); hypothetical protein 3567374..3567592 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253924.1 CDS slyD NC_016863.1 3567780 3568370 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3567780..3568370) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253925.1 CDS yheV NC_016863.1 3568465 3568665 R putative cytoplasmic protein complement(3568465..3568665) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253926.1 CDS kefB NC_016863.1 3568676 3570481 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3568676..3570481) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253927.1 CDS yheR NC_016863.1 3570481 3571032 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3570481..3571032) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253928.1 CDS yheS NC_016863.1 3571298 3573205 D similar to Escherichia coli putative ATP-binding component (AAC76377.1); contains duplicated ATPase domain; putative ABC transporter ATP-binding protein 3571298..3573205 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253929.1 CDS STMUK_3446 NC_016863.1 3573368 3573589 D similar to putative ATPase component of ABC transporter with duplicated ATPase domain (Pid: YP_002047483.1).; hypothetical protein 3573368..3573589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253930.1 CDS STMUK_3447 NC_016863.1 3573591 3573902 R hypothetical protein complement(3573591..3573902) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253931.1 CDS yheT NC_016863.1 3574100 3575167 D alpha/beta-hydrolase fold; putative hydrolase 3574100..3575167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253932.1 CDS yheU NC_016863.1 3575164 3575382 D hypothetical protein 3575164..3575382 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253933.1 CDS prkB NC_016863.1 3575434 3576303 D similar to Escherichia coli probable phosphoribulokinase (AAC76380.1); putative phosphoribulokinase 3575434..3576303 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253934.1 CDS yhfA NC_016863.1 3576399 3576803 R hypothetical protein complement(3576399..3576803) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253935.1 CDS crp NC_016863.1 3577111 3577743 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3577111..3577743 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253936.1 CDS yhfK NC_016863.1 3577792 3579879 D putative inner membrane protein 3577792..3579879 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253937.1 CDS argD NC_016863.1 3579922 3581139 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxo; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3579922..3581139) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253938.1 CDS pabA NC_016863.1 3581225 3581788 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(3581225..3581788) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253939.1 CDS fic NC_016863.1 3581820 3582422 R cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; cell filamentation protein Fic complement(3581820..3582422) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253940.1 CDS yhfG NC_016863.1 3582412 3582579 R hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein complement(3582412..3582579) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253941.1 CDS ppiA NC_016863.1 3582688 3583260 R peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A complement(3582688..3583260) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253942.1 CDS yhfC NC_016863.1 3583537 3584718 D similar to Escherichia coli putative transport (AAC76389.1); MFS family; hypothetical protein 3583537..3584718 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253943.1 CDS nirB NC_016863.1 3584981 3587524 D similar to Escherichia coli nitrite reductase-NAD(P)H subunit (AAC76390.1); nitrite reductase large subunit 3584981..3587524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253944.1 CDS nirD NC_016863.1 3587521 3587847 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3587521..3587847 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253945.1 CDS nirC NC_016863.1 3588113 3588922 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3588113..3588922 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253946.1 CDS cysG NC_016863.1 3588934 3590307 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin fro; siroheme synthase 3588934..3590307 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253947.1 CDS bigA NC_016863.1 3590636 3596530 D putative surface-exposed virulence protein BigA (gi|5081595); putative surface-exposed virulence protein 3590636..3596530 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253948.1 CDS tnpA_6 NC_016863.1 3596662 3597120 R transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 complement(3596662..3597120) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253949.1 CDS yhfL NC_016863.1 3597434 3597604 D putative outer membrane lipoprotein 3597434..3597604 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253950.1 CDS trpS NC_016863.1 3597749 3598753 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3597749..3598753) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253951.1 CDS gph NC_016863.1 3598746 3599504 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3598746..3599504) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253952.1 CDS rpe NC_016863.1 3599497 3600174 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3599497..3600174) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253953.1 CDS dam NC_016863.1 3600192 3601028 R DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase complement(3600192..3601028) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253954.1 CDS damX NC_016863.1 3601209 3602486 R similar to Escherichia coli putative membrane protein; overproduction may interfere with cell division (AAC76413.1); hypothetical protein complement(3601209..3602486) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253955.1 CDS aroB NC_016863.1 3602584 3603672 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3602584..3603672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253956.1 CDS aroK NC_016863.1 3603729 3604250 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3603729..3604250) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253957.1 CDS hofQ NC_016863.1 3604715 3605953 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeru; outer membrane porin HofQ complement(3604715..3605953) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253958.1 CDS yrfA NC_016863.1 3605868 3606269 R putative inner membrane protein complement(3605868..3606269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253959.1 CDS yrfB NC_016863.1 3606259 3606732 R putative inner membrane protein complement(3606259..3606732) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253960.1 CDS yrfC NC_016863.1 3606716 3607255 R putative inner membrane protein complement(3606716..3607255) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253961.1 CDS yrfD NC_016863.1 3607255 3608034 R hypothetical protein complement(3607255..3608034) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253962.1 CDS mrcA NC_016863.1 3608131 3610707 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the f; peptidoglycan synthetase 3608131..3610707 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253963.1 CDS nudE NC_016863.1 3610803 3611399 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3610803..3611399) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253964.1 CDS yrfF NC_016863.1 3611689 3613821 D similar to Escherichia coli putative dehydrogenase (AAC76423.1); putative inner membrane protein 3611689..3613821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253965.1 CDS yrfG NC_016863.1 3613886 3614554 D similar to Escherichia coli putative phosphatase (AAC76424.1); putative hydrolase 3613886..3614554 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253966.1 CDS yrfH NC_016863.1 3614565 3614966 D predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3614565..3614966 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253967.1 CDS hslO NC_016863.1 3614985 3615869 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone prot; Hsp33-like chaperonin 3614985..3615869 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253968.1 CDS yhgE NC_016863.1 3615979 3617688 R similar to Escherichia coli putative transport (AAC76427.1); putative inner membrane protein complement(3615979..3617688) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253969.1 CDS pckA NC_016863.1 3618068 3619687 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3618068..3619687 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253970.1 CDS ompB NC_016863.1 3619762 3621114 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(3619762..3621114) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253971.1 CDS ompR NC_016863.1 3621111 3621830 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of o; osmolarity response regulator complement(3621111..3621830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253972.1 CDS greB NC_016863.1 3622056 3622529 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary com; transcription elongation factor GreB 3622056..3622529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253973.1 CDS yhgF NC_016863.1 3622631 3624958 D putative RNase R 3622631..3624958 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253974.1 CDS feoA NC_016863.1 3625395 3625622 D similar to Escherichia coli ferrous iron transport protein A (AAC76433.1); ferrous iron transport protein A 3625395..3625622 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253975.1 CDS feoB NC_016863.1 3625641 3627959 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3625641..3627959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253976.1 CDS yhgG NC_016863.1 3627972 3628208 D putative cytoplasmic protein 3627972..3628208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253977.1 CDS STMUK_3494 NC_016863.1 3628443 3629357 D putative cytoplasmic protein 3628443..3629357 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253978.1 CDS bioH NC_016863.1 3629393 3630163 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH complement(3629393..3630163) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253979.1 CDS yhgH NC_016863.1 3630201 3630884 D involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3630201..3630884 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253980.1 CDS yhgI NC_016863.1 3630943 3631518 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 3630943..3631518 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253981.1 CDS gntT NC_016863.1 3631895 3633211 D similar to Escherichia coli high-affinity transport of gluconate/gluconate permease (AAC76440.1); GntP family; GNT I system; high-affinity gluconate permease 3631895..3633211 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253982.1 CDS malQ NC_016863.1 3633330 3635408 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3633330..3635408) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253983.1 CDS malP NC_016863.1 3635418 3637811 R similar to Escherichia coli maltodextrin phosphorylase (AAC76442.1); maltodextrin phosphorylase complement(3635418..3637811) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253984.1 CDS malT NC_016863.1 3638405 3641110 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3638405..3641110 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253985.1 CDS STMUK_3502 NC_016863.1 3641197 3641472 R putative cytoplasmic protein complement(3641197..3641472) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253986.1 CDS STMUK_3503 NC_016863.1 3641475 3641735 R similar to Escherichia coli damage-inducible protein J (AAC73330.1); putative DNA-damage-inducibile protein complement(3641475..3641735) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253987.1 CDS rtcA NC_016863.1 3641844 3642863 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase complement(3641844..3642863) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253988.1 CDS rtcB NC_016863.1 3642867 3644084 R putative cytoplasmic protein complement(3642867..3644084) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253989.1 CDS STMUK_3506 NC_016863.1 3644429 3645982 R putative ribonucleoprotein related-protein complement(3644429..3645982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253990.1 CDS rtcR NC_016863.1 3646172 3647755 D similar to Escherichia coli putative 2-component regulator (AAC76447.1); sigma N; sigma 54-dependent regulator of rtcBA expression; EBP family; sigma N 3646172..3647755 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253991.1 CDS glpR NC_016863.1 3647752 3648510 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(3647752..3648510) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253992.1 CDS glpG NC_016863.1 3648604 3649434 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(3648604..3649434) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253993.1 CDS glpE NC_016863.1 3649510 3649836 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3649510..3649836) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253994.1 CDS glpD NC_016863.1 3650035 3651543 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the; glycerol-3-phosphate dehydrogenase 3650035..3651543 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253995.1 CDS STMUK_3512 NC_016863.1 3651590 3652135 R hypothetical protein complement(3651590..3652135) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253996.1 CDS STMUK_3513 NC_016863.1 3652145 3653704 R putative periplasmic phosphate-binding protein complement(3652145..3653704) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253997.1 CDS gldA NC_016863.1 3653798 3654907 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3653798..3654907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253998.1 CDS STMUK_3515 NC_016863.1 3655248 3656579 D similar to hypothetical protein SPAB_04385 (Pid: YP_001590534.1).; hypothetical protein 3655248..3656579 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005253999.1 CDS STMUK_3516 NC_016863.1 3656576 3658291 D similar to Escherichia coli putative dehydratase (AAC73372.1); putative dihydroxyacid dehydratase 3656576..3658291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254000.1 CDS STMUK_3517 NC_016863.1 3658335 3659240 D similar to Escherichia coli putative lyase/synthase (AAC73371.1); dihydrodipicolinate synthase 3658335..3659240 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254001.1 CDS STMUK_3518 NC_016863.1 3659284 3660039 R similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator complement(3659284..3660039) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254002.1 CDS glgP NC_016863.1 3660217 3662664 R similar to Escherichia coli glycogen phosphorylase (AAC76453.1); glycogen phosphorylase complement(3660217..3662664) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254003.1 CDS glgA NC_016863.1 3662684 3664117 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(3662684..3664117) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254004.1 CDS glgC NC_016863.1 3664117 3665412 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3664117..3665412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254005.1 CDS glgX NC_016863.1 3665427 3667403 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein complement(3665427..3667403) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254006.1 CDS glgB NC_016863.1 3667400 3669586 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3667400..3669586) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254007.1 CDS asd NC_016863.1 3669933 3671039 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3669933..3671039) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254008.1 CDS STMUK_3525 NC_016863.1 3671166 3671546 D similar to E. coli orf, hypothetical protein(AAC76459.1); Blastp hit to AAC76459.1 (197 aa); putative inner membrane protein 3671166..3671546 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254009.1 CDS gntU NC_016863.1 3671463 3672803 R similar to Escherichia coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); low affinity gluconate transporter complement(3671463..3672803) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254010.1 CDS gntK NC_016863.1 3672800 3673333 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3672800..3673333) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254011.1 CDS gntR NC_016863.1 3673472 3674467 R similar to Escherichia coli regulator of gluconate operon (AAC76463.1); gntUKR (GalR/LacI familiy; gluconate operon transcriptional repressor complement(3673472..3674467) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254012.1 CDS yhhW NC_016863.1 3674597 3675292 R putative cytoplasmic protein complement(3674597..3675292) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254013.1 CDS yhhX NC_016863.1 3675416 3676453 R similar to Escherichia coli putative regulator (AAC76465.1); putative dehydrogenase complement(3675416..3676453) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254014.1 CDS yhhY NC_016863.1 3676922 3677410 D YhhY; regulated by the fur regulator; unknown function; putative acetyltransferase YhhY 3676922..3677410 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254015.1 CDS STMUK_3532 NC_016863.1 3677675 3678889 D ORF408 (gi|4456874); regulator of sugar metabolism; putative transcriptional regulator 3677675..3678889 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254016.1 CDS STMUK_3533 NC_016863.1 3678905 3679666 D ORF 245 (gi|4456875); similar to STM1381; putative cytoplasmic protein 3678905..3679666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254017.1 CDS STMUK_3534 NC_016863.1 3679720 3680691 D putative inner membrane protein 3679720..3680691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254018.1 CDS STMUK_3535 NC_016863.1 3680688 3681722 D similar to Escherichia coli putative hydrolase (AAC76404.1); putative phosphotriesterase 3680688..3681722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254019.1 CDS ggt NC_016863.1 3681767 3683509 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptid; gamma-glutamyltranspeptidase complement(3681767..3683509) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254020.1 CDS yhhA NC_016863.1 3683635 3684051 D hypothetical protein 3683635..3684051 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254021.1 CDS ugpQ NC_016863.1 3684064 3684804 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3684064..3684804) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254022.1 CDS ugpC NC_016863.1 3684801 3685871 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(3684801..3685871) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254023.1 CDS ugpE NC_016863.1 3685873 3686718 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(3685873..3686718) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254024.1 CDS ugpA NC_016863.1 3686715 3687602 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(3686715..3687602) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254025.1 CDS ugpB NC_016863.1 3687666 3688982 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(3687666..3688982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254026.1 CDS STMUK_3543 NC_016863.1 3689241 3689609 R similar to death-on-curing protein of phage P1; death-on-curing protein complement(3689241..3689609) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254027.1 CDS yhhV NC_016863.1 3689606 3689833 R hypothetical protein in livF 5'region (SW:YHHV_SALTY); putative cytoplasmic protein complement(3689606..3689833) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254028.1 CDS livF NC_016863.1 3689959 3690672 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3689959..3690672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254029.1 CDS livG NC_016863.1 3690674 3691441 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3690674..3691441) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254030.1 CDS livM NC_016863.1 3691438 3692715 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(3691438..3692715) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254031.1 CDS livH NC_016863.1 3692712 3693638 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(3692712..3693638) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254032.1 CDS livK NC_016863.1 3693698 3694807 R leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter complement(3693698..3694807) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254033.1 CDS yhhK NC_016863.1 3695229 3695612 D putative acetyltransferase 3695229..3695612 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254034.1 CDS STMUK_3551 NC_016863.1 3695590 3695724 D putative cytoplasmic protein 3695590..3695724 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254035.1 CDS livJ NC_016863.1 3695807 3696904 R leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter complement(3695807..3696904) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254036.1 CDS rpoH NC_016863.1 3697232 3698086 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3697232..3698086) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254037.1 CDS ftsX NC_016863.1 3698332 3699387 R putative ABC transporter, membrane protein; cell division protein FtsX complement(3698332..3699387) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254038.1 CDS ftsE NC_016863.1 3699380 3700048 R putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE complement(3699380..3700048) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254039.1 CDS ftsY NC_016863.1 3700051 3701526 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(3700051..3701526) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254040.1 CDS rsmD NC_016863.1 3701652 3702248 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3701652..3702248 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254041.1 CDS yhhL NC_016863.1 3702235 3702507 D hypothetical protein 3702235..3702507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254042.1 CDS yhhM NC_016863.1 3702529 3702900 R similar to Escherichia coli putative receptor (AAC76492.1); putative inner membrane protein complement(3702529..3702900) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254043.1 CDS yhhN NC_016863.1 3703042 3703668 D similar to Escherichia coli putative enzyme (AAC76493.1); putative inner membrane protein 3703042..3703668 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254044.1 CDS zntA NC_016863.1 3703749 3705947 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3703749..3705947 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254045.1 CDS tcp NC_016863.1 3706147 3707790 D methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3706147..3707790 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254046.1 CDS yhhP NC_016863.1 3707814 3708059 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(3707814..3708059) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254047.1 CDS yhhQ NC_016863.1 3708229 3708894 D hypothetical protein 3708229..3708894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254048.1 CDS STMUK_3565 NC_016863.1 3708967 3709524 D hypothetical protein 3708967..3709524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254049.1 CDS yhhS NC_016863.1 3709528 3710787 R similar to Escherichia coli putative transport (AAC76498.1); MFS family; major facilitator superfamily transporter complement(3709528..3710787) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254050.1 CDS yhhT NC_016863.1 3710877 3711926 D PerM family; putative permease 3710877..3711926 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254051.1 CDS acpT NC_016863.1 3711978 3712556 D holo-(acyl carrier protein) synthase 2 3711978..3712556 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254052.1 CDS nikR NC_016863.1 3712648 3713049 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3712648..3713049 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254053.1 CDS yhhJ NC_016863.1 3713139 3714263 R similar to Escherichia coli putative transporter (AAC76510.1); putative ABC superfamily; ATP-binding/membrane transport protein; putative ABC transport protein complement(3713139..3714263) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254054.1 CDS yhiH NC_016863.1 3714263 3716953 R similar to Escherichia coli putative ATP-binding component of a transport system; fragment 1 (AAC76511.1); permease component; putative ABC-type multidrug transport system ATPase component complement(3714263..3716953) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254055.1 CDS yhiI NC_016863.1 3717001 3718068 R similar to Escherichia coli putative membrane protein (AAC76512.1); hypothetical protein complement(3717001..3718068) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254056.1 CDS yhiN NC_016863.1 3718374 3719570 R hypothetical protein complement(3718374..3719570) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254057.1 CDS pitA NC_016863.1 3719801 3721297 D similar to Escherichia coli low-affinity phosphate transport (AAC76518.1); PiT family; low-affinity phosphate transporter 3719801..3721297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254058.1 CDS uspB NC_016863.1 3721437 3721772 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB complement(3721437..3721772) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254059.1 CDS uspA NC_016863.1 3722160 3722594 D similar to Escherichia coli universal stress protein; broad regulatory function (AAC76520.1); universal stress protein A 3722160..3722594 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254060.1 CDS yhiP NC_016863.1 3722919 3724391 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3722919..3724391 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254061.1 CDS yhiQ NC_016863.1 3724483 3725241 R predicted SAM-dependent methyltransferase; putative methyltransferase complement(3724483..3725241) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254062.1 CDS prlC NC_016863.1 3725248 3727290 R oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A complement(3725248..3727290) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254063.1 CDS STMUK_3580 NC_016863.1 3727472 3728743 R putative phosphatase complement(3727472..3728743) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254064.1 CDS yhiR NC_016863.1 3728954 3729796 D putative cytoplasmic protein 3728954..3729796 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254065.1 CDS gor NC_016863.1 3729901 3731253 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3729901..3731253 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254066.1 CDS STMUK_3583 NC_016863.1 3731300 3732343 R similar to Escherichia coli periplasmic L-asparaginase II (AAC75994.1); putative L-asparaginase complement(3731300..3732343) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254067.1 CDS STMUK_3584 NC_016863.1 3732402 3733721 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(3732402..3733721) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254068.1 CDS STMUK_3585 NC_016863.1 3733775 3734620 R similar to Escherichia coli putative kinase (AAC76399.1); ribokinase family; putative sugar kinase complement(3733775..3734620) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254069.1 CDS STMUK_3586 NC_016863.1 3734684 3735661 R similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase complement(3734684..3735661) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254070.1 CDS STMUK_3587 NC_016863.1 3735837 3736556 R similar to Escherichia coli putative transcriptional regulator (AAC76400.1); GntR family; putative regulatory protein complement(3735837..3736556) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254071.1 CDS treF NC_016863.1 3736882 3738531 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3736882..3738531 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254072.1 CDS STMUK_3589 NC_016863.1 3738544 3740133 R putative inner membrane protein complement(3738544..3740133) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254073.1 CDS STMUK_3590 NC_016863.1 3740414 3740770 D putative phage endolysin 3740414..3740770 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254074.1 CDS yhjB NC_016863.1 3740776 3741378 R similar to Escherichia coli putative regulator (AAC76545.1); LuxR/UhpA family; putative transcriptional regulator complement(3740776..3741378) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254075.1 CDS yhjC NC_016863.1 3742009 3742908 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 3742009..3742908 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254076.1 CDS yhjD NC_016863.1 3742981 3744009 D putative tRNA-processing ribonuclease 3742981..3744009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254077.1 CDS yhjE NC_016863.1 3744360 3745682 D similar to Escherichia coli putative transport protein (AAC76548.1); MFS family; putative transport protein 3744360..3745682 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254078.1 CDS yhjG NC_016863.1 3745722 3747782 R putative inner membrane protein complement(3745722..3747782) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254079.1 CDS yhjH NC_016863.1 3747892 3748659 R in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein complement(3747892..3748659) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254080.1 CDS kdgK NC_016863.1 3748888 3749817 D similar to Escherichia coli ketodeoxygluconokinase (AAC76551.1); ketodeoxygluconokinase 3748888..3749817 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254081.1 CDS yhjJ NC_016863.1 3749871 3751358 R protein YhjJ precursor (SW:YHJJ_SALTY); putative Zn-dependent peptidase complement(3749871..3751358) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254082.1 CDS dctA NC_016863.1 3751578 3752864 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(3751578..3752864) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254083.1 CDS yhjK NC_016863.1 3753022 3754995 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative p; putative phosphodiesterase complement(3753022..3754995) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254084.1 CDS bscC NC_016863.1 3755202 3758744 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC complement(3755202..3758744) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254085.1 CDS STMUK_3602 NC_016863.1 3758726 3759835 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase complement(3758726..3759835) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254086.1 CDS yhjN NC_016863.1 3759839 3762139 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(3759839..3762139) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254087.1 CDS bcsA NC_016863.1 3762150 3764774 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit complement(3762150..3764774) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254088.1 CDS yhjQ NC_016863.1 3764771 3765523 R cell division protein complement(3764771..3765523) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254089.1 CDS yhjR NC_016863.1 3765524 3765727 R putative cytoplasmic protein complement(3765524..3765727) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254090.1 CDS yhjS NC_016863.1 3765972 3767543 D similar to Escherichia coli putative protease (AAC76561.1); putative cytoplasmic protein 3765972..3767543 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254091.1 CDS yhjT NC_016863.1 3767540 3767731 D putative inner membrane protein 3767540..3767731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254092.1 CDS yhjU NC_016863.1 3767728 3769407 D putative inner membrane protein 3767728..3769407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254093.1 CDS STMUK_3610 NC_016863.1 3769489 3769596 R similar to hypothetical protein SPAB_04503 (Pid: YP_001590651.1).; hypothetical protein complement(3769489..3769596) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254094.1 CDS STMUK_3611 NC_016863.1 3769981 3770121 D cystathionine gamma-synthase 3769981..3770121 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254095.1 CDS yhjV NC_016863.1 3770239 3771537 D similar to Escherichia coli putative transporter protein (AAC76564.1); HAAAP family; putative transport protein 3770239..3771537 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254096.1 CDS dppF NC_016863.1 3771638 3772651 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(3771638..3772651) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254097.1 CDS dppD NC_016863.1 3772648 3773631 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(3772648..3773631) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254098.1 CDS dppC NC_016863.1 3773642 3774544 R similar to Escherichia coli dipeptide transport system permease protein 2 (AAC76567.1); ABC superfamily membrane protein; dipeptide transporter complement(3773642..3774544) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254099.1 CDS dppB NC_016863.1 3774554 3775573 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(3774554..3775573) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254100.1 CDS dppA NC_016863.1 3775730 3777337 R similar to Escherichia coli dipeptide transport protein (AAC76569.1); ABC superfamily periplasmic protein; dipeptide transport protein complement(3775730..3777337) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254101.1 CDS STMUK_3618 NC_016863.1 3777893 3779218 R similar to Escherichia coli putative permease (AAC75926.1); putative xanthine permease complement(3777893..3779218) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254102.1 CDS STMUK_3619 NC_016863.1 3779276 3780400 R contains putative PQQ enzyme repeat; hypothetical protein complement(3779276..3780400) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254103.1 CDS STMUK_3620 NC_016863.1 3780550 3781557 D similar to Escherichia coli regulator for rbs operon (AAC76776.1); LacI family; putative regulatory protein 3780550..3781557 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254104.1 CDS yhjW NC_016863.1 3781884 3783575 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3781884..3783575) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254105.1 CDS lpfE NC_016863.1 3783793 3784320 R PFE protein precursor (SW:LPFE_SALTY); long polar fimbrial minor protein complement(3783793..3784320) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254106.1 CDS lpfC NC_016863.1 3785413 3787941 R outer membrane usher protein LpfC precursor (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein complement(3785413..3787941) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254107.1 CDS lpfB NC_016863.1 3787964 3788662 R chaperone protein LpfB precursor (SW:LPFB_SALTY); long polar fimbrial chaperone precursor complement(3787964..3788662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254108.1 CDS lpfA NC_016863.1 3788747 3789283 R long polar fimbrial protein A precursor (SW:LPFA_SALTY); long polar fimbrial protein A precursor complement(3788747..3789283) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254109.1 CDS yhjY NC_016863.1 3789789 3790493 R similar to Escherichia coli putative lipase (AAC76572.1); putative lipase complement(3789789..3790493) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254110.1 CDS tag NC_016863.1 3790650 3791231 D constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3790650..3791231 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254111.1 CDS yiaC NC_016863.1 3791209 3791649 D hypothetical protein 3791209..3791649 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254112.1 CDS bisC NC_016863.1 3791618 3793951 R similar to Escherichia coli biotin sulfoxide reductase (AAC76575.1); biotin sulfoxide reductase complement(3791618..3793951) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254113.1 CDS yiaD NC_016863.1 3794104 3794766 D similar to Escherichia coli putative outer membrane protein (AAC76576.1); putative outer membrane lipoprotein 3794104..3794766 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254114.1 CDS yiaE NC_016863.1 3794985 3795959 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3794985..3795959 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254115.1 CDS yiaF NC_016863.1 3796009 3796719 R putative outer membrane lipoprotein complement(3796009..3796719) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254116.1 CDS yiaG NC_016863.1 3797158 3797448 D putative transcriptional regulator 3797158..3797448 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254117.1 CDS cspA NC_016863.1 3797737 3797949 D cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; major cold shock protein 3797737..3797949 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254118.1 CDS STMUK_3637 NC_016863.1 3798123 3798662 D hypothetical protein 3798123..3798662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254119.1 CDS STMUK_3638 NC_016863.1 3799034 3799519 R putative acetyltransferase complement(3799034..3799519) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254120.1 CDS STMUK_3639 NC_016863.1 3799507 3799794 R putative cytoplasmic protein complement(3799507..3799794) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254121.1 CDS STMUK_3640 NC_016863.1 3799972 3800439 R putative acetyltransferase complement(3799972..3800439) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254122.1 CDS glyS NC_016863.1 3801068 3803137 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the; glycyl-tRNA synthetase subunit beta complement(3801068..3803137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254123.1 CDS glyQ NC_016863.1 3803147 3804058 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of t; glycyl-tRNA synthetase subunit alpha complement(3803147..3804058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254124.1 CDS STMUK_3643 NC_016863.1 3804197 3804499 R putative outer membrane lipoprotein complement(3804197..3804499) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254125.1 CDS yiaH NC_016863.1 3804665 3805660 D putative inner membrane protein 3804665..3805660 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254126.1 CDS yiaB NC_016863.1 3805683 3806036 R putative inner membrane protein complement(3805683..3806036) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254127.1 CDS xylB NC_016863.1 3806211 3807665 R similar to Escherichia coli xylulokinase (AAC76588.1); xylulokinase complement(3806211..3807665) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254128.1 CDS xylA NC_016863.1 3807765 3809087 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3807765..3809087) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254129.1 CDS xylR NC_016863.1 3809450 3810628 D similar to Escherichia coli putative regulator of xyl operon (AAC76593.1); AraC/XylS family; xylose operon regulatory protein 3809450..3810628 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254130.1 CDS bax NC_016863.1 3810689 3811513 R similar to Escherichia coli putative ATP-binding protein (AAC76594.1); hypothetical protein complement(3810689..3811513) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254131.1 CDS malS NC_016863.1 3811829 3813856 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3811829..3813856 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254132.1 CDS avtA NC_016863.1 3814030 3815280 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3814030..3815280 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254133.1 CDS ysaA NC_016863.1 3815317 3815790 R putative oxidoreductase complement(3815317..3815790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254134.1 CDS yiaJ NC_016863.1 3815907 3816707 R similar to Escherichia coli putative regulator (AAC76598.1); IclR family; transcriptional repressor complement(3815907..3816707) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254135.1 CDS yiaK NC_016863.1 3816937 3817935 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3816937..3817935 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254136.1 CDS yiaL NC_016863.1 3817947 3818411 D similar to Escherichia coli putative lipase (AAC76600.1); putative cytoplasmic protein 3817947..3818411 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254137.1 CDS STMUK_3656 NC_016863.1 3818435 3819367 D similar to CheA; putative chemotaxis protein 3818435..3819367 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254138.1 CDS yiaM NC_016863.1 3819506 3819979 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease 3819506..3819979 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254139.1 CDS yiaN NC_016863.1 3819982 3821259 D similar to Escherichia coli putative membrane protein (AAC76602.1); DedA family; hypothetical protein 3819982..3821259 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254140.1 CDS yiaO NC_016863.1 3821271 3822257 D similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3821271..3822257 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254141.1 CDS lyxK NC_016863.1 3822261 3823757 D similar to Escherichia coli L-xylulose kinase (AAC76604.1); cryptic; L-xylulose kinase 3822261..3823757 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254142.1 CDS sgbH NC_016863.1 3823754 3824416 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3823754..3824416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254143.1 CDS sgbU NC_016863.1 3824409 3825269 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 3824409..3825269 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254144.1 CDS STMUK_3664 NC_016863.1 3826119 3826934 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC family; helix-turn-helix; putative regulatory protein complement(3826119..3826934) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254145.1 CDS STMUK_3665 NC_016863.1 3827198 3829153 D putative cytoplasmic protein 3827198..3829153 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254146.1 CDS aldB NC_016863.1 3829271 3830809 R similar to Escherichia coli aldehyde dehydrogenase B; lactaldehyde dehydrogenase (AAC76612.1); aldehyde dehydrogenase B complement(3829271..3830809) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254147.1 CDS STMUK_3667 NC_016863.1 3830978 3831859 D similar to Escherichia coli possible NagC-like transcriptional regulator (AAC73497.1); putative transcriptional regulator 3830978..3831859 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254148.1 CDS selB NC_016863.1 3832144 3833994 R similar to Escherichia coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); selenocysteinyl-tRNA-specific translation factor complement(3832144..3833994) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254149.1 CDS selA NC_016863.1 3833991 3835382 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3833991..3835382) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254150.1 CDS yibF NC_016863.1 3835481 3836089 R similar to Escherichia coli putative S-transferase (AAC76616.1); putative glutathione S-transferase complement(3835481..3836089) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254151.1 CDS mtlA NC_016863.1 3836565 3838481 D similar to Escherichia coli PTS system; mannitol-specific enzyme IIABC components (AAC76623.1); PTS family; mannitol-specific enzyme IIABC component 3836565..3838481 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254152.1 CDS mtlD NC_016863.1 3838702 3839850 D similar to Escherichia coli mannitol-1-phosphate dehydrogenase (AAC76624.1); mannitol-1-phosphate 5-dehydrogenase 3838702..3839850 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254153.1 CDS mtlR NC_016863.1 3839847 3840437 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3839847..3840437 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254154.1 CDS STMUK_3674 NC_016863.1 3840447 3840656 R putative cytoplasmic protein complement(3840447..3840656) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254155.1 CDS yibL NC_016863.1 3840947 3841309 D hypothetical protein 3840947..3841309 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254156.1 CDS STMUK_3676 NC_016863.1 3841800 3842483 D putative inner membrane lipoprotein 3841800..3842483 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254157.1 CDS STMUK_3677 NC_016863.1 3842527 3846912 D similar to Escherichia coli putative membrane protein (AAC74454.1); putative inner membrane protein 3842527..3846912 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254158.1 CDS lldP NC_016863.1 3847211 3848866 D similar to Escherichia coli L-lactate permease (AAC76627.1); L-lactate permease 3847211..3848866 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254159.1 CDS lldR NC_016863.1 3848863 3849639 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3848863..3849639 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254160.1 CDS lldD NC_016863.1 3849636 3850826 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3849636..3850826 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254161.1 CDS yibK NC_016863.1 3850890 3851363 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; putative tRNA/rRNA methyltransferase YibK 3850890..3851363 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254162.1 CDS STMUK_3682 NC_016863.1 3851431 3852435 R similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); putative transcriptional regulator complement(3851431..3852435) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254163.1 CDS STMUK_3683 NC_016863.1 3852754 3853950 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3852754..3853950 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254164.1 CDS STMUK_3684 NC_016863.1 3854024 3855334 D similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3854024..3855334 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254165.1 CDS cysE NC_016863.1 3855417 3856238 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3855417..3856238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254166.1 CDS gpsA NC_016863.1 3856316 3857335 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3856316..3857335) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254167.1 CDS secB NC_016863.1 3857335 3857802 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3857335..3857802) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254168.1 CDS grxC NC_016863.1 3857846 3858097 R similar to Escherichia coli glutaredoxin 3 (AAC76634.1); glutaredoxin 3 complement(3857846..3858097) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254169.1 CDS yibN NC_016863.1 3858184 3858615 R putative rhodanese-like sulfurtransferase complement(3858184..3858615) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254170.1 CDS pmgI NC_016863.1 3858863 3860407 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3858863..3860407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254171.1 CDS yibP NC_016863.1 3860417 3861700 D similar to Escherichia coli putative membrane protein (AAC76637.1); hypothetical protein 3860417..3861700 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254172.1 CDS yigQ NC_016863.1 3861704 3862666 D hypothetical protein 3861704..3862666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254173.1 CDS yibD NC_016863.1 3862653 3863687 R similar to Escherichia coli putative regulator (AAC76639.1); putative glycosyl transferase complement(3862653..3863687) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254174.1 CDS tdh NC_016863.1 3864181 3865206 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(3864181..3865206) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254175.1 CDS kbl NC_016863.1 3865216 3866412 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(3865216..3866412) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254176.1 CDS rfaD NC_016863.1 3866615 3867547 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3866615..3867547 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254177.1 CDS rfaF NC_016863.1 3867550 3868596 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3867550..3868596 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254178.1 CDS rfaC NC_016863.1 3868596 3869549 D lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3868596..3869549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254179.1 CDS rfaL NC_016863.1 3869589 3870803 D O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3869589..3870803 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254180.1 CDS rfaK NC_016863.1 3870860 3872005 R lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; putative hexose transferase complement(3870860..3872005) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254181.1 CDS rfaZ NC_016863.1 3872106 3872915 R lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein complement(3872106..3872915) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254182.1 CDS rfaY NC_016863.1 3873065 3873763 R lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core biosynthesis protein complement(3873065..3873763) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254183.1 CDS rfaJ NC_016863.1 3873786 3874796 R UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide glucosyltransferase complement(3873786..3874796) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254184.1 CDS rfaI NC_016863.1 3874814 3875827 R UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide-alpha-1, 3-D-galactosyltransferase complement(3874814..3875827) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254185.1 CDS rfaB NC_016863.1 3875833 3876912 R UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3875833..3876912) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254186.1 CDS yibR NC_016863.1 3876982 3877215 R hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); putative inner membrane protein complement(3876982..3877215) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254187.1 CDS rfaP NC_016863.1 3877247 3878044 R lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core biosynthetic protein complement(3877247..3878044) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254188.1 CDS rfaG NC_016863.1 3878037 3879161 R similar to Escherichia coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1); glucosyltransferase I complement(3878037..3879161) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254189.1 CDS rfaQ NC_016863.1 3879158 3880192 R similar to Escherichia coli lipopolysaccharide core biosynthetic protein (AAC76656.1); modification of heptose region of core; lipopolysaccharide core biosynthesis protein complement(3879158..3880192) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254190.1 CDS kdtA NC_016863.1 3880637 3881914 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3880637..3881914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254191.1 CDS coaD NC_016863.1 3881923 3882402 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3881923..3882402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254192.1 CDS mutM NC_016863.1 3882430 3883239 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3882430..3883239) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254193.1 CDS rpmG NC_016863.1 3883337 3883504 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of th; 50S ribosomal protein L33 complement(3883337..3883504) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254194.1 CDS rpmB NC_016863.1 3883525 3883761 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3883525..3883761) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254195.1 CDS radC NC_016863.1 3883979 3884644 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3883979..3884644) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254196.1 CDS dfp NC_016863.1 3884817 3886040 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3884817..3886040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254197.1 CDS dut NC_016863.1 3886021 3886476 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3886021..3886476 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254198.1 CDS ttk NC_016863.1 3886584 3887180 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3886584..3887180 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254199.1 CDS pyrE NC_016863.1 3887258 3887899 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3887258..3887899) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254200.1 CDS rph NC_016863.1 3887978 3888694 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3887978..3888694) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254201.1 CDS yicC NC_016863.1 3888820 3889683 D similar to Escherichia coli putative alpha helix protein (AAC76668.1); hypothetical protein 3888820..3889683 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254202.1 CDS STMUK_3722 NC_016863.1 3889733 3890635 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative transcriptional regulator complement(3889733..3890635) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254203.1 CDS STMUK_3723 NC_016863.1 3890709 3891590 D similar to glyoxylases; putative Zn-dependent hydrolase 3890709..3891590 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254204.1 CDS yigC NC_016863.1 3891841 3892458 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3891841..3892458 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254205.1 CDS yicF NC_016863.1 3892455 3894140 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(3892455..3894140) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254206.1 CDS gmk NC_016863.1 3894397 3895020 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3894397..3895020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254207.1 CDS rpoZ NC_016863.1 3895075 3895350 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3895075..3895350 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254208.1 CDS spoT NC_016863.1 3895369 3897480 D similar to Escherichia coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1); bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3895369..3897480 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254209.1 CDS spoU NC_016863.1 3897485 3898174 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3897485..3898174 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254210.1 CDS recG NC_016863.1 3898180 3900261 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3898180..3900261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254211.1 CDS STMUK_3731 NC_016863.1 3900264 3901115 R putative cytoplasmic protein complement(3900264..3901115) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254212.1 CDS gltS NC_016863.1 3901118 3902323 R similar to Escherichia coli glutamate transport (AAC76677.1); GltS family; glutamate transport protein complement(3901118..3902323) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254213.1 CDS yicE NC_016863.1 3902551 3903942 D similar to Escherichia coli putative transport protein (AAC76678.1); NCS2 family; putative purine/xanthine transport protein 3902551..3903942 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254214.1 CDS yicH NC_016863.1 3904063 3905772 D putative inner membrane protein 3904063..3905772 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254215.1 CDS yicI NC_016863.1 3905875 3908193 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xy; alpha-xylosidase complement(3905875..3908193) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254216.1 CDS yicJ NC_016863.1 3908205 3909587 R may be involved in the transport of galactosides-pentoses-hexuronides; putative transporter complement(3908205..3909587) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254217.1 CDS STMUK_3738 NC_016863.1 3910286 3910630 R putative cytoplasmic protein complement(3910286..3910630) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254218.1 CDS sugR NC_016863.1 3911308 3912498 D similar to putative ATP binding protein SugR (gi|4324607); ATP-binding protein 3911308..3912498 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254219.1 CDS STMUK_3740 NC_016863.1 3912495 3912845 D similar to putative ATP binding protein SugR (gi|4324607); putative cytoplasmic protein 3912495..3912845 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254220.1 CDS rhuM NC_016863.1 3913032 3914069 D RhuM (gi|4324608); putative cytoplasmic protein 3913032..3914069 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254221.1 CDS rmbA NC_016863.1 3915368 3915985 D RmbA (gi|4324609); putative cytoplasmic protein 3915368..3915985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254222.1 CDS misL NC_016863.1 3916060 3918927 D MisL (gi|4324610); similar to AIDA-I autotransporter; member of IgA1 family of proteases; outer membrane protein; putative autotransporter 3916060..3918927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254223.1 CDS fidL NC_016863.1 3919022 3919486 R FidL (gi|4324611); putative inner membrane protein complement(3919022..3919486) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254224.1 CDS marT NC_016863.1 3919497 3920354 R putative transcriptional regulator MarT (gi|4324612); similar to Vibrio cholerae ToxR; putative transcriptional regulator complement(3919497..3920354) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254225.1 CDS STMUK_3746 NC_016863.1 3920407 3920520 R Pathogenicity island encoded protein: SPI3; putative cytoplasmic protein complement(3920407..3920520) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254226.1 CDS slsA NC_016863.1 3921138 3921818 D SlsA (gi|4324613); similar to STM0950; putative inner membrane protein 3921138..3921818 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254227.1 CDS cigR NC_016863.1 3922047 3922526 R CigR (gi|4324614); putative inner membrane protein complement(3922047..3922526) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254228.1 CDS mgtB NC_016863.1 3922841 3925567 R Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; Mg2+ transporter complement(3922841..3925567) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254229.1 CDS mgtC NC_016863.1 3925787 3926482 R Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; Mg2+ transport protein complement(3925787..3926482) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254230.1 CDS yicL NC_016863.1 3926991 3927893 D hypothetical protein in selC 3'region (SW:YICL_SALTY); integral membrane protein; putative permease 3926991..3927893 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254231.1 CDS STMUK_3752 NC_016863.1 3927936 3928877 R putative cytoplasmic protein complement(3927936..3928877) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254232.1 CDS STMUK_3753 NC_016863.1 3929113 3929856 R putative cytoplasmic protein complement(3929113..3929856) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254233.1 CDS STMUK_3754 NC_016863.1 3929843 3930952 R L-seryl-tRNA selenium transferase; putative selenocysteine synthase complement(3929843..3930952) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254234.1 CDS STMUK_3755 NC_016863.1 3930956 3931816 R similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative phosphotransferase system enzyme II complement(3930956..3931816) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254235.1 CDS STMUK_3756 NC_016863.1 3931813 3932562 R similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative phosphotransferase system enzyme IIC complement(3931813..3932562) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254236.1 CDS STMUK_3757 NC_016863.1 3932708 3933193 R similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative phosphotransferase system enzyme IIB complement(3932708..3933193) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254237.1 CDS STMUK_3758 NC_016863.1 3933204 3933629 R putative phosphotransferase system enzyme IIA complement(3933204..3933629) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254238.1 CDS STMUK_3759 NC_016863.1 3933848 3936646 R similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator complement(3933848..3936646) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254239.1 CDS STMUK_3760 NC_016863.1 3936843 3937136 D putative inner membrane protein 3936843..3937136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254240.1 CDS STMUK_3761 NC_016863.1 3937242 3938624 D similar to Escherichia coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1); putative glycosyl hydrolase 3937242..3938624 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254241.1 CDS yicM NC_016863.1 3938684 3939877 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter complement(3938684..3939877) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254242.1 CDS STMUK_3763 NC_016863.1 3940093 3940452 D putative cytoplasmic protein 3940093..3940452 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254243.1 CDS STMUK_3764 NC_016863.1 3940436 3940759 D helix-turn-helix; putative DNA-binding protein 3940436..3940759 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254244.1 CDS STMUK_3765 NC_016863.1 3940850 3941119 R similar to Escherichia coli PTS system protein HPr (AAC75468.1); putative phosphotransferase system HPr protein complement(3940850..3941119) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254245.1 CDS gatY NC_016863.1 3941129 3941989 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase complement(3941129..3941989) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254246.1 CDS STMUK_3767 NC_016863.1 3942052 3943536 R similar to Escherichia coli L-fuculokinase (AAC75845.1); pentulose and hexulose; putative sugar kinase complement(3942052..3943536) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254247.1 CDS STMUK_3768 NC_016863.1 3943529 3944887 R similar to Escherichia coli PTS system galactitol-specific enzyme IIC (AAC75153.1); putative PTS system galactitol-specific enzyme IIC component complement(3943529..3944887) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254248.1 CDS STMUK_3769 NC_016863.1 3944963 3945250 R similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); hypothetical protein complement(3944963..3945250) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254249.1 CDS STMUK_3770 NC_016863.1 3945247 3945720 R similar to Escherichia coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); phosphotransferase system mannitol/fructose-specific IIA component complement(3945247..3945720) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254250.1 CDS STMUK_3771 NC_016863.1 3945738 3946481 R similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein complement(3945738..3946481) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254251.1 CDS yicN NC_016863.1 3946834 3947286 R putative inner membrane protein complement(3946834..3947286) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254252.1 CDS uhpT NC_016863.1 3947479 3948870 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3947479..3948870) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254253.1 CDS uhpC NC_016863.1 3949013 3950341 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(3949013..3950341) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254254.1 CDS uhpB NC_016863.1 3950351 3951853 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(3950351..3951853) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254255.1 CDS uhpA NC_016863.1 3951853 3952443 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA complement(3951853..3952443) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254256.1 CDS STMUK_3777 NC_016863.1 3952518 3953531 R putative cytoplasmic protein complement(3952518..3953531) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254257.1 CDS STMUK_3778 NC_016863.1 3953543 3954859 R similar to Escherichia coli fucose permease (AAC75843.1); putative L-fucose permease complement(3953543..3954859) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254258.1 CDS STMUK_3779 NC_016863.1 3954890 3955810 R similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase complement(3954890..3955810) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254259.1 CDS STMUK_3780 NC_016863.1 3956135 3956920 D similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; putative regulatory protein 3956135..3956920 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254260.1 CDS ilvN NC_016863.1 3956922 3957212 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity; acetolactate synthase 1 regulatory subunit complement(3956922..3957212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254261.1 CDS ilvB NC_016863.1 3957216 3958904 R catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit complement(3957216..3958904) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254262.1 CDS ivbL NC_016863.1 3959011 3959109 R similar to Escherichia coli ilvB operon leader peptide (AAC76695.1); ilvB operon leader peptide complement(3959011..3959109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254263.1 CDS STMUK_3784 NC_016863.1 3959743 3959832 D hypothetical protein 3959743..3959832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254264.1 CDS STMUK_3785 NC_016863.1 3959925 3960785 D integral membrane protein 3959925..3960785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254265.1 CDS emrD NC_016863.1 3960988 3962172 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3960988..3962172 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254266.1 CDS STMUK_3787 NC_016863.1 3962099 3963184 R hypothetical protein complement(3962099..3963184) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254267.1 CDS dsdC NC_016863.1 3963248 3964171 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(3963248..3964171) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254268.1 CDS dsdX NC_016863.1 3964397 3965734 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3964397..3965734 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254269.1 CDS dsdA NC_016863.1 3965752 3967074 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3965752..3967074 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254270.1 CDS yidF NC_016863.1 3967156 3967686 R similar to Escherichia coli putative transcriptional regulator (AAC76697.1); putative cytoplasmic protein complement(3967156..3967686) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254271.1 CDS yidG NC_016863.1 3967683 3968045 R putative inner membrane protein complement(3967683..3968045) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254272.1 CDS yidH NC_016863.1 3968035 3968382 R putative inner membrane protein complement(3968035..3968382) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254273.1 CDS yidE NC_016863.1 3968826 3970487 R similar to Escherichia coli putative transport protein (AAC76708.1); hypothetical protein complement(3968826..3970487) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254274.1 CDS ibpB NC_016863.1 3970677 3971105 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB complement(3970677..3971105) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254275.1 CDS ibpA NC_016863.1 3971215 3971628 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(3971215..3971628) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254276.1 CDS yidQ NC_016863.1 3971935 3972270 D hypothetical protein 3971935..3972270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254277.1 CDS yidR NC_016863.1 3972272 3973498 R putative cytoplasmic protein complement(3972272..3973498) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254278.1 CDS ccmH NC_016863.1 3973620 3974663 R similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit complement(3973620..3974663) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254279.1 CDS ccmG NC_016863.1 3974660 3975217 R similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase complement(3974660..3975217) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254280.1 CDS ccmF NC_016863.1 3975214 3977145 R similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein complement(3975214..3977145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254281.1 CDS ccmE NC_016863.1 3977142 3977621 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE complement(3977142..3977621) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254282.1 CDS ccmD NC_016863.1 3977618 3977830 R similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C complement(3977618..3977830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254283.1 CDS ccmC NC_016863.1 3977827 3978564 R similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(3977827..3978564) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254284.1 CDS ccmB NC_016863.1 3978616 3979272 R similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein complement(3978616..3979272) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254285.1 CDS ccmA NC_016863.1 3979272 3979889 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(3979272..3979889) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254286.1 CDS STMUK_3807 NC_016863.1 3979895 3981295 R similar to Escherichia coli putative cytochrome C peroxidase (AAC76543.1); putative cytochrome c peroxidase complement(3979895..3981295) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254287.1 CDS torD NC_016863.1 3981485 3982117 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(3981485..3982117) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254288.1 CDS torA NC_016863.1 3982110 3984662 R similar to Escherichia coli trimethylamine N-oxide reductase subunit (AAC74082.1); trimethylamine N-oxide reductase subunit complement(3982110..3984662) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254289.1 CDS torC NC_016863.1 3984652 3985836 R similar to Escherichia coli trimethylamine N-oxide reductase; cytochrome c-type subunit (AAC74081.1); also has activity as negativer regulator of tor operon; trimethylamine N-oxide reductase cytochrome c-like subunit complement(3984652..3985836) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254290.1 CDS torR NC_016863.1 3985966 3986658 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3985966..3986658 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254291.1 CDS torT NC_016863.1 3986631 3987671 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(3986631..3987671) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254292.1 CDS torS NC_016863.1 3987751 3990486 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3987751..3990486 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254293.1 CDS dgoT NC_016863.1 3990512 3991849 R similar to Escherichia coli D-galactonate transport (AAC76714.1); MFS family; D-galactonate transport protein complement(3990512..3991849) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254294.1 CDS dgoA NC_016863.1 3991934 3993082 R similar to Escherichia coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase (AAC76715.1); galactonate dehydratase complement(3991934..3993082) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254295.1 CDS STMUK_3816 NC_016863.1 3993079 3993696 R similar to 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (Pid: YP_218733.1).; hypothetical protein complement(3993079..3993696) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254296.1 CDS dgoK NC_016863.1 3993680 3994558 R similar to Escherichia coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1); 2-oxo-3-deoxygalactonate kinase complement(3993680..3994558) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254297.1 CDS dgoR NC_016863.1 3994555 3995244 R similar to Escherichia coli regulator protein for dgo operon (AAC76718.1); GntR family; galactonate operon transcriptional repressor complement(3994555..3995244) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254298.1 CDS yidA NC_016863.1 3995505 3996350 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases su; sugar phosphatase complement(3995505..3996350) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254299.1 CDS STMUK_3820 NC_016863.1 3996656 3997918 D similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3996656..3997918 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254300.1 CDS STMUK_3821 NC_016863.1 3997932 3999125 D similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3997932..3999125 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254301.1 CDS STMUK_3822 NC_016863.1 3999240 4000136 D similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73855.1); LysR family; putative transcriptional regulator 3999240..4000136 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254302.1 CDS gyrB NC_016863.1 4000155 4002569 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4000155..4002569) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254303.1 CDS recF NC_016863.1 4002598 4003671 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(4002598..4003671) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254304.1 CDS dnaN NC_016863.1 4003819 4004919 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4003819..4004919) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254305.1 CDS dnaA NC_016863.1 4004924 4006324 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4004924..4006324) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254306.1 CDS rpmH NC_016863.1 4006985 4007125 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4006985..4007125 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254307.1 CDS rnpA NC_016863.1 4007142 4007501 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4007142..4007501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254308.1 CDS STMUK_3829 NC_016863.1 4007465 4007722 D hypothetical protein 4007465..4007722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254309.1 CDS yidC NC_016863.1 4007725 4009371 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4007725..4009371 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254310.1 CDS trmE NC_016863.1 4009513 4010877 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimeriza; tRNA modification GTPase TrmE 4009513..4010877 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254311.1 CDS STMUK_3834 NC_016863.1 4012678 4013640 D putative inner membrane protein 4012678..4013640 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254312.1 CDS STMUK_3835 NC_016863.1 4013706 4014575 D RNA-dependent DNA polymerase; putative reverse transcriptase 4013706..4014575 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254313.1 CDS yidY NC_016863.1 4015377 4016564 D Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4015377..4016564 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254314.1 CDS yidZ NC_016863.1 4016533 4017492 D Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4016533..4017492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254315.1 CDS yieE NC_016863.1 4017650 4018405 D putative cytoplasmic protein 4017650..4018405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254316.1 CDS yieF NC_016863.1 4018405 4018989 D putative oxidoreductase 4018405..4018989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254317.1 CDS yieG NC_016863.1 4019034 4020497 R similar to Escherichia coli putative membrane/transport protein (AAC76737.1); xanthine/uracil permeases family; hypothetical protein complement(4019034..4020497) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254318.1 CDS yieH NC_016863.1 4020540 4021205 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4020540..4021205 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254319.1 CDS phoU NC_016863.1 4021300 4022025 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(4021300..4022025) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254320.1 CDS pstB NC_016863.1 4022040 4022813 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(4022040..4022813) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254321.1 CDS pstA NC_016863.1 4022900 4023790 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(4022900..4023790) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254322.1 CDS pstC NC_016863.1 4023790 4024749 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(4023790..4024749) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254323.1 CDS pstS NC_016863.1 4024885 4025925 R similar to Escherichia coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); ABC superfamily binding protein; phosphate ABC transporter substrate-binding protein complement(4024885..4025925) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254324.1 CDS STMUK_3847 NC_016863.1 4026092 4027465 R similar to Escherichia coli PTS system; fructose-specific transport protein (AAC75228.1); putative phosphotransferase system fructose-specific component IIB complement(4026092..4027465) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254325.1 CDS aroE NC_016863.1 4027514 4028332 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4027514..4028332) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254326.1 CDS STMUK_3849 NC_016863.1 4028427 4030184 D similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4028427..4030184 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254327.1 CDS glmS NC_016863.1 4030335 4032164 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4030335..4032164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254328.1 CDS glmU NC_016863.1 4032353 4033723 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4032353..4033723) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254329.1 CDS STMUK_3852 NC_016863.1 4034043 4034741 R putative permease complement(4034043..4034741) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254330.1 CDS atpC NC_016863.1 4034970 4035389 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4034970..4035389) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254331.1 CDS atpD NC_016863.1 4035410 4036792 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4035410..4036792) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254332.1 CDS atpG NC_016863.1 4036819 4037682 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4036819..4037682) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254333.1 CDS atpA NC_016863.1 4037733 4039274 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4037733..4039274) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254334.1 CDS atpH NC_016863.1 4039287 4039820 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4039287..4039820) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254335.1 CDS atpF NC_016863.1 4039835 4040305 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4039835..4040305) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254336.1 CDS atpE NC_016863.1 4040365 4040604 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4040365..4040604) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254337.1 CDS atpB NC_016863.1 4040651 4041466 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4040651..4041466) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254338.1 CDS atpI NC_016863.1 4041475 4041855 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(4041475..4041855) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254339.1 CDS gidB NC_016863.1 4042471 4043094 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4042471..4043094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254340.1 CDS gidA NC_016863.1 4043197 4045086 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4043197..4045086) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254341.1 CDS mioC NC_016863.1 4045465 4045908 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4045465..4045908) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254342.1 CDS asnC NC_016863.1 4045998 4046456 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4045998..4046456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254343.1 CDS asnA NC_016863.1 4046607 4047599 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4046607..4047599 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254344.1 CDS yieM NC_016863.1 4047604 4049028 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(4047604..4049028) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254345.1 CDS yieN NC_016863.1 4049049 4050545 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA complement(4049049..4050545) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254346.1 CDS trkD NC_016863.1 4050893 4052761 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4050893..4052761 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254347.1 CDS rbsD NC_016863.1 4052958 4053377 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4052958..4053377 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254348.1 CDS rbsA NC_016863.1 4053385 4054890 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4053385..4054890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254349.1 CDS rbsC NC_016863.1 4054896 4055861 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4054896..4055861 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254350.1 CDS rbsB NC_016863.1 4055886 4056776 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4055886..4056776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254351.1 CDS rbsK NC_016863.1 4056909 4057838 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4056909..4057838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254352.1 CDS rbsR NC_016863.1 4057842 4058840 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4057842..4058840 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254353.1 CDS yieO NC_016863.1 4058806 4060233 R similar to Escherichia coli putative transport protein (AAC76777.1); MFS family; 1st module; putative tranport protein complement(4058806..4060233) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254354.1 CDS yieP NC_016863.1 4060245 4060949 R GntR family; putative regulatory protein complement(4060245..4060949) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254355.1 CDS yifA NC_016863.1 4066842 4067690 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(4066842..4067690) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254356.1 CDS yifE NC_016863.1 4067797 4068135 D LysR type regulator; with pssR; hypothetical protein 4067797..4068135 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254357.1 CDS yifB NC_016863.1 4068160 4069680 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; putative ATP-dependent protease complement(4068160..4069680) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254358.1 CDS ilvL NC_016863.1 4070032 4070130 D ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4070032..4070130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254359.1 CDS ilvG NC_016863.1 4070270 4071916 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4070270..4071916 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254360.1 CDS ilvM NC_016863.1 4071916 4072176 D similar to Escherichia coli acetolactate synthase II; valine insensitive (AAC77489.1); acetolactate synthase 2 regulatory subunit 4071916..4072176 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254361.1 CDS ilvE NC_016863.1 4072194 4073123 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4072194..4073123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254362.1 CDS ilvD NC_016863.1 4073284 4075134 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4073284..4075134 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254363.1 CDS ilvA NC_016863.1 4075137 4076681 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4075137..4076681 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254364.1 CDS STMUK_3893 NC_016863.1 4076965 4077282 D putative cytoplasmic protein 4076965..4077282 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254365.1 CDS STMUK_3894 NC_016863.1 4077279 4077620 D putative cytoplasmic protein 4077279..4077620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254366.1 CDS ilvY NC_016863.1 4077623 4078510 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(4077623..4078510) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254367.1 CDS ilvC NC_016863.1 4078674 4080149 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4078674..4080149 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254368.1 CDS ppiC NC_016863.1 4080241 4080522 R similar to Escherichia coli peptidyl-prolyl cis-trans isomerase C; rotamase C (AAC76780.1); peptidyl-prolyl cis-trans isomerase C complement(4080241..4080522) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254369.1 CDS STMUK_3898 NC_016863.1 4080811 4080960 D similar to Escherichia coli required for NMN transport (AAC73838.1); putative inner membrane protein 4080811..4080960 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254370.1 CDS rep NC_016863.1 4081060 4083084 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4081060..4083084 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254371.1 CDS gppA NC_016863.1 4083124 4084605 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase complement(4083124..4084605) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254372.1 CDS rhlB NC_016863.1 4084724 4085989 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4084724..4085989) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254373.1 CDS trxA NC_016863.1 4086133 4086462 D thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4086133..4086462 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254374.1 CDS rho NC_016863.1 4086881 4088140 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4086881..4088140 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254375.1 CDS rfe NC_016863.1 4088370 4089473 D similar to Escherichia coli UDP-GlcNAc-undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen; ECA (AAC76789.1); undecaprenyl-phosphate N-acetylglucosaminyltransferase 4088370..4089473 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254376.1 CDS wzzE NC_016863.1 4089485 4090531 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4089485..4090531 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254377.1 CDS wecB NC_016863.1 4090587 4091717 D similar to Escherichia coli UDP-N-acetyl glucosamine-2-epimerase; synthesis of enterobacterial common antigen; ECA (AAC76791.1); UDP-N-acetyl glucosamine-2-epimerase 4090587..4091717 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254378.1 CDS wecC NC_016863.1 4091714 4092976 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4091714..4092976 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254379.1 CDS rffG NC_016863.1 4092976 4094043 D similar to Escherichia coli dTDP-glucose 4,6-dehydratase (AAC76793.1); dTDP-glucose 4,6-dehydratase 4092976..4094043 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254380.1 CDS rffH NC_016863.1 4094076 4094300 D similar to Escherichia coli glucose-1-phosphate thymidylyltransferase (AAC76794.1); glucose-1-phosphate thymidylyltransferase 4094076..4094300 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254381.1 CDS wecD NC_016863.1 4094407 4094955 D TDP-fucosamine acetyltransferase 4094407..4094955 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254382.1 CDS wecE NC_016863.1 4094960 4096090 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4094960..4096090 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254383.1 CDS wzxE NC_016863.1 4096092 4097342 D similar to Escherichia coli putative cytochrome (AAC76797.1); involved in LPS biosynthesis; O-antigen translocase 4096092..4097342 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254384.1 CDS STMUK_3913 NC_016863.1 4097339 4098418 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4097339..4098418 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254385.1 CDS wecF NC_016863.1 4098415 4099773 D enterobacterial common antigen polymerase; putative common antigen polymerase 4098415..4099773 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254386.1 CDS wecG NC_016863.1 4099770 4100510 D probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4099770..4100510 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254387.1 CDS yifK NC_016863.1 4100717 4102102 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 4100717..4102102 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254388.1 CDS hemY NC_016863.1 4103219 4104418 R similar to Escherichia coli protein involved in a late step of protoheme IX synthesis (AAC76805.1); putative protoheme IX biogenesis protein complement(4103219..4104418) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254389.1 CDS hemX NC_016863.1 4104418 4105587 R similar to Escherichia coli uroporphyrinogen III methylase (AAC76806.1); putative uroporphyrinogen III C-methyltransferase complement(4104418..4105587) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254390.1 CDS hemD NC_016863.1 4105609 4106349 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4105609..4106349) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254391.1 CDS hemC NC_016863.1 4106346 4107302 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4106346..4107302) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254392.1 CDS cyaA NC_016863.1 4107664 4110210 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4107664..4110210 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254393.1 CDS STMUK_3926 NC_016863.1 4110318 4110671 D putative inner membrane protein 4110318..4110671 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254394.1 CDS STMUK_3927 NC_016863.1 4110857 4111399 D putative inner membrane protein 4110857..4111399 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254395.1 CDS STMUK_3928 NC_016863.1 4111411 4111773 D putative cytoplasmic protein 4111411..4111773 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254396.1 CDS cyaY NC_016863.1 4111844 4112164 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4111844..4112164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254397.1 CDS STMUK_3930 NC_016863.1 4112234 4112623 R putative inner membrane protein complement(4112234..4112623) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254398.1 CDS yifL NC_016863.1 4113319 4113522 D putative outer membrane lipoprotein 4113319..4113522 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254399.1 CDS dapF NC_016863.1 4113556 4114383 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4113556..4114383 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254400.1 CDS yigA NC_016863.1 4114380 4115087 D hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4114380..4115087 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254401.1 CDS xerC NC_016863.1 4115084 4115986 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d; site-specific tyrosine recombinase XerC 4115084..4115986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254402.1 CDS yigB NC_016863.1 4115986 4116702 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4115986..4116702 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254403.1 CDS uvrD NC_016863.1 4116838 4119000 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch; DNA-dependent helicase II 4116838..4119000 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254404.1 CDS corA NC_016863.1 4119472 4120422 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4119472..4120422 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254405.1 CDS yigF NC_016863.1 4120471 4120851 R hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); putative inner membrane protein complement(4120471..4120851) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254406.1 CDS yigG NC_016863.1 4120867 4121325 R hypothetical protein complement(4120867..4121325) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254407.1 CDS rarD NC_016863.1 4121360 4122244 R chloramphenicol resistance complement(4121360..4122244) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254408.1 CDS yigI NC_016863.1 4122288 4122773 R hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein complement(4122288..4122773) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254409.1 CDS pldA NC_016863.1 4122920 4123789 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4122920..4123789 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254410.1 CDS recQ NC_016863.1 4123855 4125702 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4123855..4125702 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254411.1 CDS rhtC NC_016863.1 4125766 4126386 D RhtB family; threonine efflux system 4125766..4126386 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254412.1 CDS rhtB NC_016863.1 4126426 4127046 R homoserine/homoserine lactone efflux protein complement(4126426..4127046) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254413.1 CDS pldB NC_016863.1 4127157 4128173 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4127157..4128173 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254414.1 CDS yigL NC_016863.1 4128189 4128989 D purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase 4128189..4128989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254415.1 CDS yigM NC_016863.1 4129070 4129969 D putative transport protein 4129070..4129969 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254416.1 CDS metR NC_016863.1 4129857 4130810 R transcriptional activator protein metR (SW:METR_SALTY); LysR family; metE/metH regulator complement(4129857..4130810) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254417.1 CDS metE NC_016863.1 4131059 4133323 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4131059..4133323 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254418.1 CDS STMUK_3951 NC_016863.1 4133667 4135010 D similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 4133667..4135010 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254419.1 CDS dlhH NC_016863.1 4135090 4135902 R similar to Escherichia coli putative enzyme (AAC76833.1); putative dienelactone hydrolase complement(4135090..4135902) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254420.1 CDS udp NC_016863.1 4136161 4136922 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4136161..4136922 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254421.1 CDS yigN NC_016863.1 4137062 4138492 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in; DNA recombination protein RmuC 4137062..4138492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254422.1 CDS ubiE NC_016863.1 4138588 4139343 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4138588..4139343 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254423.1 CDS yigP NC_016863.1 4139353 4139958 D putative inner membrane protein 4139353..4139958 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254424.1 CDS aarF NC_016863.1 4139955 4141595 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhi; putative ubiquinone biosynthesis protein UbiB 4139955..4141595 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254425.1 CDS tatA NC_016863.1 4141801 4142055 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar; twin arginine translocase protein A 4141801..4142055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254426.1 CDS tatB NC_016863.1 4142059 4142607 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4142059..4142607 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254427.1 CDS tatC NC_016863.1 4142610 4143389 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4142610..4143389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254428.1 CDS yigW NC_016863.1 4143431 4144213 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4143431..4144213 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254429.1 CDS rfaH NC_016863.1 4144221 4144709 R similar to Escherichia coli transcriptional activator that affects biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); responsible for full expression of operons rfa, rfb, hly, tra, chu, cps, and kps; may suppress operon polarit; transcriptional activator RfaH complement(4144221..4144709) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254430.1 CDS yigC NC_016863.1 4144895 4146373 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4144895..4146373 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254431.1 CDS fre NC_016863.1 4146459 4147160 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4146459..4147160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254432.1 CDS STMUK_3965 NC_016863.1 4147414 4149237 D putative outer membrane protein 4147414..4149237 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254433.1 CDS fadA NC_016863.1 4149434 4150597 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4149434..4150597) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254434.1 CDS fadB NC_016863.1 4150607 4152796 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacy; multifunctional fatty acid oxidation complex subunit alpha complement(4150607..4152796) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254435.1 CDS pepQ NC_016863.1 4152986 4154317 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4152986..4154317 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254436.1 CDS yigZ NC_016863.1 4154317 4154931 D hypothetical protein 4154317..4154931 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254437.1 CDS trkH NC_016863.1 4154970 4156421 D similar to Escherichia coli potassium uptake, requires TrkE (AAC76852.1); Trk family; potassium transporter 4154970..4156421 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254438.1 CDS hemG NC_016863.1 4156433 4156978 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4156433..4156978 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254439.1 CDS mobB NC_016863.1 4162874 4163389 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4162874..4163389) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254440.1 CDS mobA NC_016863.1 4163386 4163970 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4163386..4163970) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254441.1 CDS yihD NC_016863.1 4164040 4164309 D putative cytoplasmic protein 4164040..4164309 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254442.1 CDS yihE NC_016863.1 4164386 4165372 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4164386..4165372 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254443.1 CDS dsbA NC_016863.1 4165389 4166012 D thiol-disulfide interchange protein DabA precursor (SW:DSBA_SALTY); protein disulfide isomerase I 4165389..4166012 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254444.1 CDS yihG NC_016863.1 4166025 4166933 R similar to Escherichia coli putative endonuclease (AAC76860.1); putative acyltransferase complement(4166025..4166933) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254445.1 CDS polA NC_016863.1 4167321 4170107 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4167321..4170107 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254446.1 CDS ysxC NC_016863.1 4170442 4171074 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4170442..4171074) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254447.1 CDS STMUK_3985 NC_016863.1 4171314 4171538 D putative cytoplasmic protein 4171314..4171538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254448.1 CDS yihI NC_016863.1 4171657 4172172 D hypothetical 19.2 kDa protein in polA-hemN intergenic region (SW:YIHI_SALTY); hypothetical protein 4171657..4172172 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254449.1 CDS hemN NC_016863.1 4172361 4173734 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4172361..4173734 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254450.1 CDS glnG NC_016863.1 4174047 4175456 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4174047..4175456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254451.1 CDS glnL NC_016863.1 4175465 4176514 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4175465..4176514) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254452.1 CDS glnA NC_016863.1 4176789 4178198 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltra; glutamine synthetase complement(4176789..4178198) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254453.1 CDS STMUK_3991 NC_016863.1 4178177 4178605 R putative cytoplasmic protein complement(4178177..4178605) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254454.1 CDS typA NC_016863.1 4178574 4180397 D similar to Escherichia coli putative GTP-binding factor (AAC76868.1); GTP-binding protein 4178574..4180397 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254455.1 CDS STMUK_3993 NC_016863.1 4180452 4181186 R similar to Escherichia coli putative phosphatase (AAC73853.1); putative hydrolase complement(4180452..4181186) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254456.1 CDS STMUK_3994 NC_016863.1 4181171 4182049 R putative inner membrane protein complement(4181171..4182049) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254457.1 CDS STMUK_3995 NC_016863.1 4182046 4183287 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4182046..4183287) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254458.1 CDS STMUK_3996 NC_016863.1 4183289 4184164 R putative membrane-associated metal-dependent hydrolase complement(4183289..4184164) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254459.1 CDS STMUK_3997 NC_016863.1 4184157 4185182 R hypothetical protein complement(4184157..4185182) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254460.1 CDS STMUK_3998 NC_016863.1 4185195 4186043 R putative cytoplasmic protein complement(4185195..4186043) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254461.1 CDS ompL NC_016863.1 4186200 4186892 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L complement(4186200..4186892) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254462.1 CDS yihO NC_016863.1 4186960 4188381 R similar to Escherichia coli putative permease (AAC76873.1); GPH family transport protein complement(4186960..4188381) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254463.1 CDS yihP NC_016863.1 4188427 4189809 R similar to Escherichia coli putative permease (AAC76874.1); GPH family transport protein complement(4188427..4189809) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254464.1 CDS yihQ NC_016863.1 4189855 4191891 R similar to Escherichia coli putative glycosidase (AAC76875.1); alpha-glucosidase complement(4189855..4191891) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254465.1 CDS yihR NC_016863.1 4191935 4192792 R similar to Escherichia coli putative aldose-1-epimerase (AAC76876.1); putative aldose-1-epimerase complement(4191935..4192792) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254466.1 CDS yihS NC_016863.1 4192796 4194037 R putative isomerase complement(4192796..4194037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254467.1 CDS yihT NC_016863.1 4194053 4194931 R similar to Escherichia coli putative aldolase (AAD13443.1); putative aldolase complement(4194053..4194931) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254468.1 CDS yihU NC_016863.1 4194954 4195850 R similar to Escherichia coli putative dehydrogenase (AAD13444.1); putative oxidoreductase complement(4194954..4195850) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254469.1 CDS yihV NC_016863.1 4196015 4196911 D similar to Escherichia coli putative kinase (AAD13445.1); putative sugar kinase 4196015..4196911 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254470.1 CDS yihW NC_016863.1 4196945 4197748 D similar to Escherichia coli putative DeoR-type transcriptional regulator (AAD13446.1); DeoR family; putative glycerol-3-phosphate regulon repressor 4196945..4197748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254471.1 CDS yihX NC_016863.1 4197939 4198538 D similar to Escherichia coli putative phosphatase (AAD13447.1); phosphatase 4197939..4198538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254472.1 CDS rbn NC_016863.1 4198532 4199404 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4198532..4199404 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254473.1 CDS yihZ NC_016863.1 4199401 4199838 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4199401..4199838 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254474.1 CDS yiiD NC_016863.1 4199835 4200824 D similar to Escherichia coli putative acetyltransferase (AAD13450.1); putative acetyltransferase 4199835..4200824 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254475.1 CDS STMUK_4013 NC_016863.1 4200839 4201285 R putative cytoplasmic protein complement(4200839..4201285) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254476.1 CDS STMUK_4014 NC_016863.1 4201282 4201593 R putative cytoplasmic protein complement(4201282..4201593) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254477.1 CDS STMUK_4015 NC_016863.1 4201679 4202608 R similar to Escherichia coli putative lipase (AAC73578.1); putative acetyl esterase complement(4201679..4202608) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254478.1 CDS STMUK_4016 NC_016863.1 4202826 4203137 D similar to hypothetical protein STM4032.2N (Pid: NP_945170.1).; hypothetical protein 4202826..4203137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254479.1 CDS STMUK_4017 NC_016863.1 4203174 4203428 D merR family; putative regulatory protein 4203174..4203428 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254480.1 CDS fdhE NC_016863.1 4203475 4204404 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4203475..4204404) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254481.1 CDS fdoI NC_016863.1 4204401 4205036 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(4204401..4205036) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254482.1 CDS fdoH NC_016863.1 4205033 4205935 R similar to Escherichia coli formate dehydrogenase-O iron-sulfur subunit (AAD13455.1); Fe-S subunit; formate dehydrogenase-O beta subunit complement(4205033..4205935) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254483.1 CDS fdhD NC_016863.1 4209193 4210029 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4209193..4210029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254484.1 CDS STMUK_4023 NC_016863.1 4210297 4211328 R putative inner membrane lipoprotein complement(4210297..4211328) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254485.1 CDS yiiG NC_016863.1 4211553 4212611 D putative cytoplasmic protein 4211553..4212611 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254486.1 CDS STMUK_4025 NC_016863.1 4212966 4213289 R putative inner membrane protein complement(4212966..4213289) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254487.1 CDS STMUK_4026 NC_016863.1 4213289 4213948 R putative branched-chain amino acid permease complement(4213289..4213948) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254488.1 CDS STMUK_4027 NC_016863.1 4214031 4214597 D hypothetical protein 4214031..4214597 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254489.1 CDS yiiL NC_016863.1 4214686 4215000 R putative cytoplasmic protein complement(4214686..4215000) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254490.1 CDS STMUK_4029 NC_016863.1 4214997 4216145 R similar to Escherichia coli putative oxidoreductase (AAC76613.1); iron-containing; putative alcohol dehydrogenase complement(4214997..4216145) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254491.1 CDS rhaD NC_016863.1 4216272 4217099 R similar to Escherichia coli rhamnulose-phosphate aldolase (AAC76884.1); rhamnulose-1-phosphate aldolase complement(4216272..4217099) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254492.1 CDS rhaA NC_016863.1 4217242 4218501 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4217242..4218501) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254493.1 CDS rhaB NC_016863.1 4218498 4219967 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4218498..4219967) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254494.1 CDS rhaS NC_016863.1 4220255 4221091 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4220255..4221091 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254495.1 CDS rhaR NC_016863.1 4221244 4222092 D activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4221244..4222092 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254496.1 CDS rhaT NC_016863.1 4222089 4223123 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(4222089..4223123) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254497.1 CDS STMUK_4036 NC_016863.1 4223742 4224425 D hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); putative outer membrane protein 4223742..4224425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254498.1 CDS STMUK_4037 NC_016863.1 4224583 4225890 R similar to Escherichia coli putative membrane protein (AAC76602.1); putative C4-dicarboxylate transport system complement(4224583..4225890) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254499.1 CDS STMUK_4038 NC_016863.1 4225883 4226398 R putative C4-dicarboxylate transport system complement(4225883..4226398) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254500.1 CDS STMUK_4039 NC_016863.1 4226417 4227400 R hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); putative periplasmic dicarboxylate-binding protein complement(4226417..4227400) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254501.1 CDS sodA NC_016863.1 4227729 4228349 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4227729..4228349 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254502.1 CDS yiiM NC_016863.1 4228356 4229108 D hypothetical protein 4228356..4229108 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254503.1 CDS STMUK_4042 NC_016863.1 4229120 4229515 D putative inner membrane protein 4229120..4229515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254504.1 CDS cpxA NC_016863.1 4229566 4230939 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein complement(4229566..4230939) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254505.1 CDS cpxR NC_016863.1 4230936 4231634 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR complement(4230936..4231634) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254506.1 CDS cpxP NC_016863.1 4231785 4232285 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4231785..4232285 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254507.1 CDS yiiP NC_016863.1 4232433 4233335 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4232433..4233335 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254508.1 CDS pfkA NC_016863.1 4233520 4234482 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4233520..4234482 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254509.1 CDS sbp NC_016863.1 4234686 4235675 D sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate transporter subunit 4234686..4235675 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254510.1 CDS ushB NC_016863.1 4235776 4236531 D CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4235776..4236531 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254511.1 CDS STMUK_4050 NC_016863.1 4236794 4238128 D putative Na+/galactoside symporter 4236794..4238128 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254512.1 CDS STMUK_4051 NC_016863.1 4238139 4239098 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4238139..4239098 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254513.1 CDS STMUK_4052 NC_016863.1 4239108 4240148 D putative ADP-ribosylglycohydrolase 4239108..4240148 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254514.1 CDS STMUK_4053 NC_016863.1 4240211 4240933 D similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 4240211..4240933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254515.1 CDS STMUK_4054 NC_016863.1 4241031 4241195 D hypothetical protein 4241031..4241195 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254516.1 CDS STMUK_4055 NC_016863.1 4241211 4241342 D similar to Escherichia coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1); putative cytoplasmic protein 4241211..4241342 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254517.1 CDS STMUK_4056 NC_016863.1 4241432 4241698 R putative mannose-6-phosphate isomerase complement(4241432..4241698) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254518.1 CDS ydeV NC_016863.1 4241796 4243388 R similar to Escherichia coli putative kinase (AAC74584.1); autoinducer-2 (AI-2) kinase complement(4241796..4243388) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254519.1 CDS ydeW NC_016863.1 4243477 4244436 R similar to Escherichia coli putative transcriptional regulator, sorC family (AAC74585.1); putative transcriptional repressor complement(4243477..4244436) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254520.1 CDS ego NC_016863.1 4244692 4246227 D similar to Escherichia coli putative ATP-binding component of a transport system (AAC74586.1); putative ABC-type aldose transport system ATPase component 4244692..4246227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254521.1 CDS ydeY NC_016863.1 4246221 4247264 D similar to Escherichia coli putative transport system permease protein (AAC74587.1); putative ABC superfamily membrane protein; putative sugar transport protein 4246221..4247264 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254522.1 CDS ydeZ NC_016863.1 4247261 4248262 D similar to Escherichia coli putative transport system permease protein (AAC74588.1); putative ABC superfamily membrane protein; putative sugar transport protein 4247261..4248262 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254523.1 CDS yneA NC_016863.1 4248291 4249313 D similar to Escherichia coli putative LacI-type transcriptional regulator (AAC74589.1); putative ABC superfamily periplasmic protein; putative sugar transport protein 4248291..4249313 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254524.1 CDS yneB NC_016863.1 4249342 4250217 D aldolase 4249342..4250217 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254525.1 CDS yneC NC_016863.1 4250297 4250590 D autoinducer-2 (AI-2) modifying protein LsrG 4250297..4250590 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254526.1 CDS STMUK_4065 NC_016863.1 4250600 4251364 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4250600..4251364 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254527.1 CDS tpiA NC_016863.1 4251456 4252223 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4251456..4252223) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254528.1 CDS yiiQ NC_016863.1 4252336 4252932 R hypothetical protein complement(4252336..4252932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254529.1 CDS yiiR NC_016863.1 4253033 4253461 D putative inner membrane protein 4253033..4253461 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254530.1 CDS fpr NC_016863.1 4253568 4254314 R similar to Escherichia coli ferredoxin-NADP reductase (AAC76906.1); ferredoxin-NADP reductase complement(4253568..4254314) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254531.1 CDS glpX NC_016863.1 4254411 4255421 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(4254411..4255421) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254532.1 CDS glpK NC_016863.1 4255533 4257041 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4255533..4257041) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254533.1 CDS glpF NC_016863.1 4257062 4257907 R similar to Escherichia coli facilitated diffusion of glycerol (AAC76909.1); MIP channel; glycerol diffusion complement(4257062..4257907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254534.1 CDS yiiU NC_016863.1 4258306 4258545 D putative cytoplasmic protein 4258306..4258545 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254535.1 CDS menG NC_016863.1 4258767 4259252 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4258767..4259252) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254536.1 CDS menA NC_016863.1 4259345 4260274 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4259345..4260274) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254537.1 CDS hslU NC_016863.1 4260341 4261672 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(4260341..4261672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254538.1 CDS hslV NC_016863.1 4261682 4262212 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(4261682..4262212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254539.1 CDS ftsN NC_016863.1 4262304 4263278 R similar to Escherichia coli essential cell division protein (AAC76915.1); cell division protein FtsN complement(4262304..4263278) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254540.1 CDS cytR NC_016863.1 4263372 4264397 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(4263372..4264397) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254541.1 CDS priA NC_016863.1 4264552 4266750 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(4264552..4266750) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254542.1 CDS rpmE NC_016863.1 4266954 4267166 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing B; 50S ribosomal protein L31 4266954..4267166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254543.1 CDS STMUK_4082 NC_016863.1 4267212 4267874 R putative outer membrane lipoprotein complement(4267212..4267874) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254544.1 CDS STMUK_4083 NC_016863.1 4268075 4269865 R putative arylsulfate sulfotransferase complement(4268075..4269865) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254545.1 CDS metJ NC_016863.1 4270322 4270639 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(4270322..4270639) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254546.1 CDS metB NC_016863.1 4270904 4272064 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4270904..4272064 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254547.1 CDS metM NC_016863.1 4272067 4274499 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4272067..4274499 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254548.1 CDS STMUK_4087 NC_016863.1 4274615 4275472 R similar to Escherichia coli putative transport protein (AAC75961.1); putative inner membrane protein complement(4274615..4275472) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254549.1 CDS STMUK_4088 NC_016863.1 4275475 4276473 R similar to hypothetical protein SPC_4212 (Pid: YP_002639716.1).; hypothetical protein complement(4275475..4276473) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254550.1 CDS STMUK_4089 NC_016863.1 4276708 4277832 R putative cytoplasmic protein complement(4276708..4277832) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254551.1 CDS STMUK_4090 NC_016863.1 4277968 4279524 D similar to Escherichia coli UDP-sugar hydrolase (AAC73582.1); similar to esterase; putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase 4277968..4279524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254552.1 CDS metF NC_016863.1 4279719 4280609 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4279719..4280609 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254553.1 CDS katG NC_016863.1 4280774 4282954 D peroxidase/catalase HPI (SW:CATA_SALTY); hydroperoxidase 4280774..4282954 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254554.1 CDS yijF NC_016863.1 4283012 4283635 R hypothetical protein complement(4283012..4283635) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254555.1 CDS gldA NC_016863.1 4283894 4284997 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4283894..4284997) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254556.1 CDS talC NC_016863.1 4285009 4285671 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(4285009..4285671) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254557.1 CDS ptsA NC_016863.1 4285682 4288183 R similar to Escherichia coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); general PTS family; enzyme I; PEP-protein phosphotransferase complement(4285682..4288183) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254558.1 CDS frwC NC_016863.1 4288492 4289571 D FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; putative fructose-like permease EIIC subunit 2 4288492..4289571 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254559.1 CDS frwB NC_016863.1 4289586 4289906 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site o; putative PTS system fructose-like transporter subunit EIIB 4289586..4289906 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254560.1 CDS pflD NC_016863.1 4290005 4292302 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; putative formate acetyltransferase 2 4290005..4292302 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254561.1 CDS pflC NC_016863.1 4292268 4293146 D similar to Escherichia coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1); pyruvate formate lyase II activase 4292268..4293146 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254562.1 CDS frwD NC_016863.1 4293148 4293501 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; putative fructose-like phosphotransferase EIIB subunit 3 4293148..4293501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254563.1 CDS yijO NC_016863.1 4293488 4294339 R similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC/XylS family; putative regulatory protein complement(4293488..4294339) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254564.1 CDS yijP NC_016863.1 4294500 4296233 R hypothetical protein complement(4294500..4296233) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254565.1 CDS ppc NC_016863.1 4296444 4299095 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4296444..4299095) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254566.1 CDS argE NC_016863.1 4299464 4300615 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4299464..4300615) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254567.1 CDS argC NC_016863.1 4300704 4301708 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in; N-acetyl-gamma-glutamyl-phosphate reductase 4300704..4301708 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254568.1 CDS argB NC_016863.1 4301716 4302492 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4301716..4302492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254569.1 CDS argH NC_016863.1 4302610 4303986 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4302610..4303986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254570.1 CDS oxyR NC_016863.1 4304271 4305188 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4304271..4305188 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254571.1 CDS udhA NC_016863.1 4305171 4306571 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4305171..4306571) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254572.1 CDS yijC NC_016863.1 4306770 4307405 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4306770..4307405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254573.1 CDS yijD NC_016863.1 4307421 4307780 D hypothetical protein 4307421..4307780 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254574.1 CDS trmA NC_016863.1 4307827 4308927 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(4307827..4308927) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254575.1 CDS btuB NC_016863.1 4309301 4311145 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4309301..4311145 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254576.1 CDS murI NC_016863.1 4311090 4311941 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4311090..4311941 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254577.1 CDS murB NC_016863.1 4317859 4318887 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4317859..4318887 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254578.1 CDS birA NC_016863.1 4318884 4319846 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4318884..4319846 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254579.1 CDS coaA NC_016863.1 4319881 4320831 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4319881..4320831) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254580.1 CDS STMUK_4124 NC_016863.1 4321040 4321213 R putative cytoplasmic protein complement(4321040..4321213) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254581.1 CDS tuf NC_016863.1 4321790 4322974 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promot; elongation factor Tu 4321790..4322974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254582.1 CDS secE NC_016863.1 4323204 4323587 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4323204..4323587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254583.1 CDS nusG NC_016863.1 4323589 4324134 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4323589..4324134 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254584.1 CDS rplK NC_016863.1 4324292 4324720 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4324292..4324720 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254585.1 CDS rplA NC_016863.1 4324724 4325428 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4324724..4325428 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254586.1 CDS rplJ NC_016863.1 4325848 4326345 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4325848..4326345 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254587.1 CDS rplL NC_016863.1 4326412 4326777 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimula; 50S ribosomal protein L7/L12 4326412..4326777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254588.1 CDS rpoB NC_016863.1 4327095 4331123 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4327095..4331123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254589.1 CDS rpoC NC_016863.1 4331200 4335423 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4331200..4335423 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254590.1 CDS STMUK_4138 NC_016863.1 4335465 4335788 D putative inner membrane protein 4335465..4335788 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254591.1 CDS STMUK_4139 NC_016863.1 4335794 4336138 R putative cytoplasmic protein complement(4335794..4336138) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254592.1 CDS STMUK_4140 NC_016863.1 4336092 4336229 R similar to hypothetical protein SARI_03506 (Pid: YP_001572473.1).; hypothetical protein complement(4336092..4336229) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254593.1 CDS STMUK_4141 NC_016863.1 4336537 4337547 D putative cytoplasmic protein 4336537..4337547 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254594.1 CDS STMUK_4142 NC_016863.1 4337870 4338058 D putative cytoplasmic protein 4337870..4338058 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254595.1 CDS thiH NC_016863.1 4338209 4339342 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an ir; thiamine biosynthesis protein ThiH complement(4338209..4339342) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254596.1 CDS thiG NC_016863.1 4339339 4340109 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4339339..4340109) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254597.1 CDS STMUK_4145 NC_016863.1 4340111 4340311 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(4340111..4340311) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254598.1 CDS thiF NC_016863.1 4340292 4341050 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(4340292..4341050) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254599.1 CDS thiE NC_016863.1 4341043 4341678 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(4341043..4341678) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254600.1 CDS thiC NC_016863.1 4341678 4343573 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(4341678..4343573) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254601.1 CDS rsd NC_016863.1 4343937 4344425 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4343937..4344425) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254602.1 CDS nudC NC_016863.1 4344518 4345291 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4344518..4345291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254603.1 CDS hemE NC_016863.1 4345332 4346396 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4345332..4346396 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254604.1 CDS nfi NC_016863.1 4346406 4347077 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and p; endonuclease V 4346406..4347077 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254605.1 CDS yjaG NC_016863.1 4347119 4347709 D putative cytoplasmic protein 4347119..4347709 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254606.1 CDS hupA NC_016863.1 4347896 4348168 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4347896..4348168 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254607.1 CDS yjaH NC_016863.1 4348180 4348872 D putative inner membrane protein 4348180..4348872 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254608.1 CDS zraP NC_016863.1 4348914 4349369 R zinc resistance protein complement(4348914..4349369) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254609.1 CDS hydH NC_016863.1 4349623 4351020 D sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4349623..4351020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254610.1 CDS hydG NC_016863.1 4351026 4352351 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4351026..4352351 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254611.1 CDS purD NC_016863.1 4352348 4353637 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4352348..4353637) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254612.1 CDS purH NC_016863.1 4353649 4355238 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4353649..4355238) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254613.1 CDS yjaB NC_016863.1 4361392 4361829 R hypothetical protein in rrfE-metA intergenic region (SW:YJAB_SALTY); hypothetical protein complement(4361392..4361829) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254614.1 CDS metA NC_016863.1 4361986 4362915 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4361986..4362915 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254615.1 CDS aceB NC_016863.1 4363184 4364785 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4363184..4364785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254616.1 CDS aceA NC_016863.1 4364817 4366121 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4364817..4366121 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254617.1 CDS aceK NC_016863.1 4366223 4367974 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4366223..4367974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254618.1 CDS STMUK_4170 NC_016863.1 4367938 4368345 R putative cytoplasmic protein complement(4367938..4368345) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254619.1 CDS iclR NC_016863.1 4368356 4369180 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator complement(4368356..4369180) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254620.1 CDS metH NC_016863.1 4369397 4373167 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4369397..4373167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254621.1 CDS yjbB NC_016863.1 4373434 4375065 D hypothetical protein in metH-pepE intergenic region (SW:YJBB_SALTY); PNaS family; putative transport protein 4373434..4375065 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254622.1 CDS pepE NC_016863.1 4375141 4375830 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4375141..4375830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254623.1 CDS STMUK_4175 NC_016863.1 4375902 4376003 D putative cytoplasmic protein 4375902..4376003 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254624.1 CDS STMUK_4176 NC_016863.1 4376038 4376577 D similar to Escherichia coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); putative cytoplasmic protein 4376038..4376577 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254625.1 CDS yjbC NC_016863.1 4376624 4377493 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4376624..4377493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254626.1 CDS yjbD NC_016863.1 4377490 4377762 R hypothetical protein complement(4377490..4377762) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254627.1 CDS STMUK_4179 NC_016863.1 4377860 4378801 R putative Na+-dependent transporter complement(4377860..4378801) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254628.1 CDS STMUK_4180 NC_016863.1 4379063 4379791 R putative cytoplasmic protein complement(4379063..4379791) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254629.1 CDS STMUK_4181 NC_016863.1 4379988 4380278 R putative inner membrane protein complement(4379988..4380278) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254630.1 CDS STMUK_4182 NC_016863.1 4380527 4380982 R putative cytoplasmic protein complement(4380527..4380982) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254631.1 CDS STMUK_4183 NC_016863.1 4380979 4381584 R putative cytoplasmic protein complement(4380979..4381584) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254632.1 CDS STMUK_4184 NC_016863.1 4381589 4383334 R similar to Escherichia coli putative membrane protein (AAC74454.1); putative phage tail fiber protein H complement(4381589..4383334) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254633.1 CDS STMUK_4185 NC_016863.1 4383337 4383969 R putative phage tail protein complement(4383337..4383969) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254634.1 CDS STMUK_4186 NC_016863.1 4383962 4385077 R putative phage baseplate protein complement(4383962..4385077) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254635.1 CDS STMUK_4187 NC_016863.1 4385068 4385427 R putative phage baseplate protein complement(4385068..4385427) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254636.1 CDS STMUK_4188 NC_016863.1 4385591 4387138 R putative inner membrane protein complement(4385591..4387138) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254637.1 CDS STMUK_4189 NC_016863.1 4387138 4388067 R similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative phage glycosyltransferase complement(4387138..4388067) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254638.1 CDS STMUK_4190 NC_016863.1 4388064 4388426 R putative phage glucose translocase complement(4388064..4388426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254639.1 CDS STMUK_4191 NC_016863.1 4388754 4389476 R putative phage baseplate component complement(4388754..4389476) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254640.1 CDS STMUK_4192 NC_016863.1 4389486 4390529 R putative cytoplasmic protein complement(4389486..4390529) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254641.1 CDS STMUK_4193 NC_016863.1 4390517 4390726 R putative inner membrane protein complement(4390517..4390726) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254642.1 CDS STMUK_4194 NC_016863.1 4390726 4391679 R putative methyl-accepting chemotaxis protein complement(4390726..4391679) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254643.1 CDS STMUK_4195 NC_016863.1 4391679 4394033 R putative phage tail protein complement(4391679..4394033) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254644.1 CDS STMUK_4196 NC_016863.1 4394218 4394535 R similar to hypothetical protein SeHA_C4551 (Pid: YP_002048200.1).; hypothetical protein complement(4394218..4394535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254645.1 CDS STMUK_4197 NC_016863.1 4394587 4395111 R putative phage tail core protein complement(4394587..4395111) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254646.1 CDS STMUK_4198 NC_016863.1 4395111 4396538 R putative phage tail sheath protein complement(4395111..4396538) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254647.1 CDS STMUK_4199 NC_016863.1 4396528 4396725 R putative cytoplasmic protein complement(4396528..4396725) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254648.1 CDS STMUK_4200 NC_016863.1 4396722 4397177 R putative cytoplasmic protein complement(4396722..4397177) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254649.1 CDS STMUK_4201 NC_016863.1 4397337 4397651 R putative inner membrane protein complement(4397337..4397651) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254650.1 CDS STMUK_4202 NC_016863.1 4397664 4398269 R putative soluble lytic murein transglycosylase complement(4397664..4398269) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254651.1 CDS STMUK_4203 NC_016863.1 4398272 4398559 R putative inner membrane protein complement(4398272..4398559) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254652.1 CDS STMUK_4204 NC_016863.1 4399279 4399482 D putative cytoplasmic protein 4399279..4399482 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254653.1 CDS lysC NC_016863.1 4399615 4400964 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(4399615..4400964) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254654.1 CDS pgi NC_016863.1 4401309 4402958 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4401309..4402958 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254655.1 CDS yjbE NC_016863.1 4403399 4403644 D putative outer membrane protein 4403399..4403644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254656.1 CDS yjbF NC_016863.1 4403678 4404346 D putative outer membrane lipoprotein 4403678..4404346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254657.1 CDS yjbG NC_016863.1 4404343 4405080 D hypothetical protein 4404343..4405080 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254658.1 CDS yjbH NC_016863.1 4405080 4407176 D putative outer membrane lipoprotein 4405080..4407176 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254659.1 CDS yjbA NC_016863.1 4407319 4407729 D phosphate-starvation-inducible protein PsiE 4407319..4407729 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254660.1 CDS malG NC_016863.1 4407895 4408785 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(4407895..4408785) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254661.1 CDS malF NC_016863.1 4408800 4410344 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(4408800..4410344) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254662.1 CDS malE NC_016863.1 4410476 4411675 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein complement(4410476..4411675) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254663.1 CDS malK NC_016863.1 4412028 4413137 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4412028..4413137 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254664.1 CDS lamB NC_016863.1 4413226 4414584 D porin involved in the transport of maltose and maltodextrins; maltoporin 4413226..4414584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254665.1 CDS malM NC_016863.1 4414748 4415665 D maltose operon periplasmic protein precursor (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4414748..4415665 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254666.1 CDS ubiC NC_016863.1 4415846 4416343 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4415846..4416343 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254667.1 CDS ubiA NC_016863.1 4416357 4417229 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4416357..4417229 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254668.1 CDS plsB NC_016863.1 4417328 4419748 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4417328..4419748) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254669.1 CDS dgkA NC_016863.1 4419919 4420287 D similar to Escherichia coli diacylglycerol kinase (AAC77012.1); diacylglycerol kinase 4419919..4420287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254670.1 CDS lexA NC_016863.1 4420396 4421004 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4420396..4421004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254671.1 CDS dinF NC_016863.1 4421183 4422508 D similar to Escherichia coli DNA-damage-inducible protein F (AAC77014.1); induced by UV and mitomycin C; SOS and lexA regulon; DNA-damage-inducible SOS response protein 4421183..4422508 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254672.1 CDS STMUK_4224 NC_016863.1 4422505 4422618 D putative cytoplasmic protein 4422505..4422618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254673.1 CDS yjbJ NC_016863.1 4422637 4422849 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; putative stress-response protein 4422637..4422849 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254674.1 CDS zur NC_016863.1 4422948 4423463 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor complement(4422948..4423463) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254675.1 CDS STMUK_4227 NC_016863.1 4423710 4425020 D similar to plasmid R64 TraF; conjugative transfer protein 4423710..4425020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254676.1 CDS yjbN NC_016863.1 4425108 4426106 D putative TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4425108..4426106 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254677.1 CDS pspG NC_016863.1 4426274 4426516 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4426274..4426516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254678.1 CDS qor NC_016863.1 4426691 4427674 R similar to Escherichia coli quinone oxidoreductase (AAC77021.1); NADPH-dependent; quinone oxidoreductase complement(4426691..4427674) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254679.1 CDS dnaB NC_016863.1 4427739 4429154 D unwinds double stranded DNA; replicative DNA helicase 4427739..4429154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254680.1 CDS alr NC_016863.1 4429186 4430265 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4429186..4430265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254681.1 CDS tyrB NC_016863.1 4430451 4431644 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4430451..4431644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254682.1 CDS aphA NC_016863.1 4431831 4432544 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4431831..4432544 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254683.1 CDS yjbQ NC_016863.1 4432673 4433089 D putative cytoplasmic protein 4432673..4433089 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254684.1 CDS yjbR NC_016863.1 4433092 4433448 D putative cytoplasmic protein 4433092..4433448 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254685.1 CDS STMUK_4237 NC_016863.1 4433449 4433787 R putative inner membrane protein complement(4433449..4433787) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254686.1 CDS STMUK_4238 NC_016863.1 4433774 4434229 R putative outer membrane lipoprotein complement(4433774..4434229) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254687.1 CDS uvrA NC_016863.1 4434361 4437186 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion h; excinuclease ABC subunit A complement(4434361..4437186) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254688.1 CDS STMUK_4240 NC_016863.1 4437151 4437267 D putative cytoplasmic protein 4437151..4437267 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254689.1 CDS ssb NC_016863.1 4437434 4437964 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4437434..4437964 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254690.1 CDS STMUK_4242 NC_016863.1 4439005 4439637 D putative inner membrane or exported protein spi4_A (gi|7467268); hypothetical protein 4439005..4439637 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254691.1 CDS STMUK_4243 NC_016863.1 4439634 4441022 D hypothetical protein spi4_A (gi|7467268); putative methyl-accepting chemotaxis protein 4439634..4441022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254692.1 CDS STMUK_4244 NC_016863.1 4441012 4442331 D similar to ABC exporter outer membrane component (gi|7467234); putative ABC exporter outer membrane component 4441012..4442331 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254693.1 CDS STMUK_4245 NC_016863.1 4442328 4443605 D membrane permease; HlyD secretion protein (gi|7467244); cation efflux pump 4442328..4443605 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254694.1 CDS STMUK_4246 NC_016863.1 4443622 4460301 D fusion of two Salmonella typhimurium hypothetical proteins (gi|7467255) and (gi|7467255); may contain rearrangements with respect to similar proteins; putative inner membrane protein 4443622..4460301 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254695.1 CDS STMUK_4247 NC_016863.1 4460341 4462407 D similar to leukotoxin expression protein B (gi|7467272); contains an N-terminal double-glycine peptidase domain; putative ABC-type bacteriocin/lantibiotic exporter 4460341..4462407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254696.1 CDS yjcB NC_016863.1 4462685 4462966 R putative inner membrane protein complement(4462685..4462966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254697.1 CDS yjcC NC_016863.1 4463529 4465130 D diguanylate cyclase 4463529..4465130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254698.1 CDS soxS NC_016863.1 4465118 4465441 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4465118..4465441) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254699.1 CDS soxR NC_016863.1 4465528 4465986 D redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensing transcriptional activator 4465528..4465986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254700.1 CDS STMUK_4252 NC_016863.1 4466279 4466947 D putative glutathione S-transferase 4466279..4466947 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254701.1 CDS yjcD NC_016863.1 4467294 4468643 D xanthine/uracil permease family; hypothetical protein 4467294..4468643 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254702.1 CDS yjcE NC_016863.1 4468793 4470439 D putative CPA1 family; Na/H transport protein 4468793..4470439 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254703.1 CDS STMUK_4255 NC_016863.1 4470534 4471421 R similar to Escherichia coli activator; hydrogen peroxide-inducible genes (AAC76943.1); LysR family; putative transcriptional regulator complement(4470534..4471421) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254704.1 CDS STMUK_4256 NC_016863.1 4471525 4471935 D putative inner membrane protein 4471525..4471935 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254705.1 CDS STMUK_4257 NC_016863.1 4471928 4472617 D similar to Escherichia coli putative seritonin transporter (AAC75203.1); putative inner membrane protein 4471928..4472617 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254706.1 CDS actP NC_016863.1 4472656 4474305 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4472656..4474305) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254707.1 CDS yjcH NC_016863.1 4474302 4474616 R putative inner membrane protein complement(4474302..4474616) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254708.1 CDS acs NC_016863.1 4474862 4476820 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4474862..4476820) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254709.1 CDS STMUK_4261 NC_016863.1 4477007 4477153 D putative cytoplasmic protein 4477007..4477153 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254710.1 CDS nrfA NC_016863.1 4477252 4478688 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4477252..4478688 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254711.1 CDS nrfB NC_016863.1 4478713 4479366 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4478713..4479366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254712.1 CDS nrfC NC_016863.1 4479363 4480034 D similar to Escherichia coli formate-dependent nitrite reductase; FeS centers (AAC77042.1); putative formate-dependent nitrite reductase 4479363..4480034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254713.1 CDS nrfD NC_016863.1 4480031 4480987 D similar to Escherichia coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); putative formate-dependent nitrate reductase 4480031..4480987 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254714.1 CDS nrfE NC_016863.1 4480980 4483202 D similar to Escherichia coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase 4480980..4483202 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254715.1 CDS nrfG NC_016863.1 4483199 4483819 D similar to Escherichia coli protein of formate-dependent nitrite reductase complex (AAD13459.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase complex subunit NrfG 4483199..4483819 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254716.1 CDS gltP NC_016863.1 4484164 4485474 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4484164..4485474 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254717.1 CDS yjcO NC_016863.1 4485632 4486321 R contains TPR repeats; hypothetical protein complement(4485632..4486321) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254718.1 CDS lpxO NC_016863.1 4489000 4489908 R putative dioxygenase for lipid synthesis; LpxO (gi|9454389); putative dioxygenase complement(4489000..4489908) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254719.1 CDS phnO NC_016863.1 4490166 4490630 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate ca; aminoalkylphosphonic acid N-acetyltransferase complement(4490166..4490630) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254720.1 CDS phnB NC_016863.1 4490752 4491195 R hypothetical protein complement(4490752..4491195) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254721.1 CDS phnA NC_016863.1 4491315 4491650 R involved in phosphonate metabolism; hypothetical protein complement(4491315..4491650) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254722.1 CDS proP NC_016863.1 4492118 4493620 D similar to Escherichia coli low-affinity transport system; proline permease II (AAC77072.1); MFS family; proline/glycine betaine transporter 4492118..4493620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254723.1 CDS basS NC_016863.1 4493787 4494857 R sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS/PmrB complement(4493787..4494857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254724.1 CDS basR NC_016863.1 4494867 4495535 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(4494867..4495535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254725.1 CDS yjdB NC_016863.1 4495532 4497175 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein complement(4495532..4497175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254726.1 CDS yjdE NC_016863.1 4497309 4498646 R similar to Escherichia coli putative amino acid/amine transport protein; cryptic (AAC77076.1); APC family; arginine:agmatin antiporter complement(4497309..4498646) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254727.1 CDS adiY NC_016863.1 4498786 4499547 R similar to Escherichia coli putative AraC-type regulatory protein (AAC77077.1); AraC/XylS family; activates aidA; transcriptional activator complement(4498786..4499547) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254728.1 CDS adi NC_016863.1 4499845 4502115 R similar to Escherichia coli biodegradative arginine decarboxylase (AAC77078.1); inducible by acid; catabolic arginine decarboxylase complement(4499845..4502115) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254729.1 CDS melR NC_016863.1 4502345 4503277 R similar to Escherichia coli regulator of melibiose operon (AAC77079.1); AraC/XylS family; DNA-binding transcriptional regulator MelR complement(4502345..4503277) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254730.1 CDS melA NC_016863.1 4503546 4504901 D alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4503546..4504901 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254731.1 CDS melB NC_016863.1 4504985 4506415 D melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4504985..4506415 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254732.1 CDS fumB NC_016863.1 4506513 4508159 R similar to Escherichia coli fumarase B; fumarate hydratase class I anaerobic isozyme (AAC77083.1); fumarase B complement(4506513..4508159) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254733.1 CDS dcuB NC_016863.1 4508255 4509595 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(4508255..4509595) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254734.1 CDS STMUK_4287 NC_016863.1 4509742 4510008 R putative cytoplasmic protein complement(4509742..4510008) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254735.1 CDS dcuR NC_016863.1 4510325 4511044 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4510325..4511044) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254736.1 CDS dcuS NC_016863.1 4511041 4512672 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4511041..4512672) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254737.1 CDS STMUK_4290 NC_016863.1 4513106 4515457 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); putative anaerobic dimethylsulfoxide reductase subunit A 4513106..4515457 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254738.1 CDS STMUK_4291 NC_016863.1 4515471 4516097 D similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase subunit B 4515471..4516097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254739.1 CDS STMUK_4292 NC_016863.1 4516090 4516863 D similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative anaerobic dimethylsulfoxide reductase subunit C 4516090..4516863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254740.1 CDS STMUK_4293 NC_016863.1 4516879 4517532 D similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 4516879..4517532 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254741.1 CDS STMUK_4294 NC_016863.1 4517616 4519016 R hypothetical protein complement(4517616..4519016) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254742.1 CDS STMUK_4295 NC_016863.1 4519320 4520225 D putative inner membrane protein 4519320..4520225 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254743.1 CDS STMUK_4296 NC_016863.1 4520519 4520788 R hypothetical protein complement(4520519..4520788) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254744.1 CDS STMUK_4297 NC_016863.1 4520796 4521011 R putative cytoplasmic protein complement(4520796..4521011) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254745.1 CDS STMUK_4298 NC_016863.1 4521034 4521321 R LuxR family; putative regulatory protein complement(4521034..4521321) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254746.1 CDS STMUK_4299 NC_016863.1 4521318 4522193 R HilD (gi|4455108); AraC-type; contains putative DNA-binding domain; putative DNA-binding protein complement(4521318..4522193) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254747.1 CDS STMUK_4300 NC_016863.1 4522458 4522679 R putative cytoplasmic protein complement(4522458..4522679) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254748.1 CDS STMUK_4301 NC_016863.1 4522996 4523289 D CopG family; putative helix-turn-helix protein; hypothetical protein 4522996..4523289 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254749.1 CDS STMUK_4302 NC_016863.1 4523286 4523777 D putative acetyltransferase 4523286..4523777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254750.1 CDS phoN NC_016863.1 4524025 4524777 R nonspecific acid phosphatase precursor (SW:PHON_SALTY); non-specific acid phosphatase complement(4524025..4524777) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254751.1 CDS STMUK_4304 NC_016863.1 4525987 4526364 R similar to hypothetical protein SARI_03325 (Pid: YP_001572299.1).; hypothetical protein complement(4525987..4526364) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254752.1 CDS STMUK_4305 NC_016863.1 4526436 4526768 D similar to Escherichia coli putative transcriptional regulator (AAC73589.1); MerR family; putative regulatory protein 4526436..4526768 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254753.1 CDS yjdC NC_016863.1 4527207 4527782 R putative transcriptional regulator complement(4527207..4527782) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254754.1 CDS dipZ NC_016863.1 4527819 4529522 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bon; thiol:disulfide interchange protein complement(4527819..4529522) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254755.1 CDS cutA NC_016863.1 4529498 4529845 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4529498..4529845) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254756.1 CDS dcuA NC_016863.1 4529966 4531267 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4529966..4531267) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254757.1 CDS aspA NC_016863.1 4531382 4532818 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4531382..4532818) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254758.1 CDS fxsA NC_016863.1 4533120 4533635 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4533120..4533635 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254759.1 CDS yjeH NC_016863.1 4533694 4534935 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4533694..4534935) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254760.1 CDS groES NC_016863.1 4535211 4535504 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; re; co-chaperonin GroES 4535211..4535504 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254761.1 CDS groEL NC_016863.1 4535548 4537194 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they ar; chaperonin GroEL 4535548..4537194 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254762.1 CDS yjeI NC_016863.1 4537420 4537791 D putative outer membrane lipoprotein 4537420..4537791 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254763.1 CDS yjeJ NC_016863.1 4537839 4538696 R putative inner membrane protein complement(4537839..4538696) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254764.1 CDS yjeK NC_016863.1 4538978 4540006 R putative aminomutase complement(4538978..4540006) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254765.1 CDS efp NC_016863.1 4540047 4540613 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4540047..4540613 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254766.1 CDS ecnA NC_016863.1 4540632 4540808 D putative entericidin A precursor 4540632..4540808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254767.1 CDS ecnB NC_016863.1 4540916 4541062 D entericidin B membrane lipoprotein 4540916..4541062 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254768.1 CDS ecnR NC_016863.1 4541093 4541680 R LuxR family; putative regulatory protein complement(4541093..4541680) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254769.1 CDS sugE NC_016863.1 4541937 4542254 D member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4541937..4542254 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254770.1 CDS blc NC_016863.1 4542271 4542804 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4542271..4542804) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254771.1 CDS frdD NC_016863.1 4542916 4543275 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4542916..4543275) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254772.1 CDS frdC NC_016863.1 4543286 4543681 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase subunit C complement(4543286..4543681) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254773.1 CDS frdB NC_016863.1 4543692 4544426 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase iron-sulfur subunit complement(4543692..4544426) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254774.1 CDS frdA NC_016863.1 4544419 4546209 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase flavoprotein subunit complement(4544419..4546209) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254775.1 CDS yjeA NC_016863.1 4546532 4547509 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRN; lysyl-tRNA synthetase 4546532..4547509 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254776.1 CDS yjeM NC_016863.1 4547735 4549237 D hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; putative amino-acid transport protein 4547735..4549237 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254777.1 CDS yjeO NC_016863.1 4549289 4549603 D putative inner membrane protein 4549289..4549603 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254778.1 CDS yjeP NC_016863.1 4549670 4552996 R similar to Escherichia coli putative periplasmic binding protein (AAC77119.1); hypothetical protein complement(4549670..4552996) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254779.1 CDS psd NC_016863.1 4553015 4553983 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4553015..4553983) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254780.1 CDS yjeQ NC_016863.1 4554075 4555151 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(4554075..4555151) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254781.1 CDS orn NC_016863.1 4555234 4555779 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4555234..4555779 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254782.1 CDS STMUK_4336 NC_016863.1 4555841 4556581 R similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); putative arginine-binding periplasmic protein complement(4555841..4556581) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254783.1 CDS yjeS NC_016863.1 4557666 4558820 R putative FeS protein complement(4557666..4558820) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254784.1 CDS yjeF NC_016863.1 4558804 4560351 D hypothetical protein 4558804..4560351 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254785.1 CDS yjeE NC_016863.1 4560323 4560784 D possibly involved in cell wall synthesis; putative ATPase 4560323..4560784 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254786.1 CDS amiB NC_016863.1 4560801 4562120 D N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase II 4560801..4562120 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254787.1 CDS mutL NC_016863.1 4562130 4563986 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itsel; DNA mismatch repair protein 4562130..4563986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254788.1 CDS miaA NC_016863.1 4563979 4564929 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA s; tRNA delta(2)-isopentenylpyrophosphate transferase 4563979..4564929 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254789.1 CDS hfq NC_016863.1 4565012 4565320 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4565012..4565320 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254790.1 CDS hflX NC_016863.1 4565392 4566672 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 4565392..4566672 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254791.1 CDS hflK NC_016863.1 4566887 4568146 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4566887..4568146 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254792.1 CDS hflC NC_016863.1 4568149 4569153 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4568149..4569153 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254793.1 CDS yjeT NC_016863.1 4569232 4569429 D putative inner membrane protein 4569232..4569429 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254794.1 CDS purA NC_016863.1 4569532 4570830 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4569532..4570830 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254795.1 CDS yjeB NC_016863.1 4571037 4571462 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4571037..4571462 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254796.1 CDS vacB NC_016863.1 4571500 4573938 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4571500..4573938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254797.1 CDS yjfH NC_016863.1 4574029 4574760 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4574029..4574760 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254798.1 CDS yjfI NC_016863.1 4574892 4575296 D putative cytoplasmic protein 4574892..4575296 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254799.1 CDS yjfJ NC_016863.1 4575311 4576009 D similar to Escherichia coli putative alpha helical protein (AAC77139.1); IM30; suppresses sigma54-dependent transcription; putative phage shock protein A 4575311..4576009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254800.1 CDS STMUK_4357 NC_016863.1 4576009 4577079 D similar to eukaryotic potassium channels; putative potassium channel 4576009..4577079 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254801.1 CDS yjfK NC_016863.1 4577052 4577735 D putative cytoplasmic protein 4577052..4577735 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254802.1 CDS yjfL NC_016863.1 4577753 4578151 D putative inner membrane protein 4577753..4578151 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254803.1 CDS yjfM NC_016863.1 4578161 4578799 D putative inner membrane protein 4578161..4578799 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254804.1 CDS yjfC NC_016863.1 4578802 4579965 D similar to Escherichia coli putative synthetase/amidase (AAC77143.1); putative glutathionylspermidine synthase 4578802..4579965 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254805.1 CDS aidB NC_016863.1 4580050 4581672 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4580050..4581672 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254806.1 CDS yjfN NC_016863.1 4581717 4582037 R putative inner membrane protein complement(4581717..4582037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254807.1 CDS yjfO NC_016863.1 4582123 4582452 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; putative biofilm stress and motility protein A complement(4582123..4582452) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254808.1 CDS yjfP NC_016863.1 4582636 4583385 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4582636..4583385 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254809.1 CDS yjfQ NC_016863.1 4583382 4584137 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(4583382..4584137) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254810.1 CDS yjfR NC_016863.1 4584242 4585306 R contains beta-lactamase fold; putative L-ascorbate 6-phosphate lactonase complement(4584242..4585306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254811.1 CDS sgaT NC_016863.1 4585636 4587066 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4585636..4587066 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254812.1 CDS sgaB NC_016863.1 4587082 4587387 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4587082..4587387 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254813.1 CDS ptxA NC_016863.1 4587397 4587861 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4587397..4587861 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254814.1 CDS ulaD NC_016863.1 4587875 4588525 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4587875..4588525 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254815.1 CDS sgaU NC_016863.1 4588535 4589389 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4588535..4589389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254816.1 CDS ulaF NC_016863.1 4589389 4590075 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4589389..4590075 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254817.1 CDS yjfY NC_016863.1 4590204 4590479 R putative outer membrane protein complement(4590204..4590479) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254818.1 CDS STMUK_4375 NC_016863.1 4590673 4590879 D putative cytoplasmic protein 4590673..4590879 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254819.1 CDS rpsF NC_016863.1 4590950 4591345 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4590950..4591345 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254820.1 CDS priB NC_016863.1 4591352 4591666 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4591352..4591666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254821.1 CDS rpsR NC_016863.1 4591671 4591898 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4591671..4591898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254822.1 CDS rplI NC_016863.1 4591940 4592389 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4591940..4592389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254823.1 CDS yifZ NC_016863.1 4592537 4593463 D putative permease 4592537..4593463 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254824.1 CDS ytfB NC_016863.1 4593513 4594148 R putative cell envelope opacity-associated protein A complement(4593513..4594148) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254825.1 CDS fklB NC_016863.1 4594326 4594988 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4594326..4594988 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254826.1 CDS cycA NC_016863.1 4595284 4596693 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4595284..4596693 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254827.1 CDS ytfE NC_016863.1 4596805 4597467 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(4596805..4597467) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254828.1 CDS ytfF NC_016863.1 4597570 4598535 R similar to Escherichia coli putative transmembrane subunit (AAC77167.1); putative cationic amino acid transporter complement(4597570..4598535) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254829.1 CDS ytfG NC_016863.1 4598616 4599464 R similar to Escherichia coli putative oxidoreductase (AAC77168.1); putative reductase complement(4598616..4599464) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254830.1 CDS ytfH NC_016863.1 4599552 4599938 D putative transcriptional regulator 4599552..4599938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254831.1 CDS cpdB NC_016863.1 4599996 4601939 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(4599996..4601939) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254832.1 CDS cysQ NC_016863.1 4602207 4602947 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4602207..4602947 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254833.1 CDS ytfJ NC_016863.1 4602937 4603494 R putative transcriptional regulator complement(4602937..4603494) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254834.1 CDS ytfK NC_016863.1 4603755 4604027 D putative cytoplasmic protein 4603755..4604027 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254835.1 CDS ytfL NC_016863.1 4604112 4605455 R similar to Escherichia coli putative transport protein (AAC77175.1); putative hemolysin-like protein complement(4604112..4605455) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254836.1 CDS msrA NC_016863.1 4605638 4606276 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4605638..4606276) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254837.1 CDS ytfM NC_016863.1 4606489 4608222 D putative outer membrane protein 4606489..4608222 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254838.1 CDS ytfN NC_016863.1 4608219 4611998 D hypothetical protein 4608219..4611998 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254839.1 CDS ytfP NC_016863.1 4612001 4612345 D putative cytoplasmic protein 4612001..4612345 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254840.1 CDS STMUK_4397 NC_016863.1 4612399 4613607 R similar to Escherichia coli D-galactonate transport (AAC76714.1); putative permease complement(4612399..4613607) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254841.1 CDS STMUK_4398 NC_016863.1 4613604 4614767 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; putative metallo-dependent hydrolase complement(4613604..4614767) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254842.1 CDS ppa NC_016863.1 4615177 4615707 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4615177..4615707) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254843.1 CDS fbp NC_016863.1 4615934 4616932 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(4615934..4616932) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254844.1 CDS mpl NC_016863.1 4617107 4618486 D similar to Escherichia coli putative ligase (AAC77190.1); UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4617107..4618486 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254845.1 CDS STMUK_4402 NC_016863.1 4618483 4618797 R similar to hypothetical protein SeAg_B4697 (Pid: YP_002149332.1).; hypothetical protein complement(4618483..4618797) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254846.1 CDS STMUK_4403 NC_016863.1 4618977 4619810 D putative transcriptional regulator 4618977..4619810 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254847.1 CDS STMUK_4404 NC_016863.1 4619861 4621294 R similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter complement(4619861..4621294) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254848.1 CDS STMUK_4405 NC_016863.1 4621537 4621716 R similar to hypothetical protein SPAB_05563 (Pid: YP_001591665.1).; hypothetical protein complement(4621537..4621716) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254849.1 CDS STMUK_4406 NC_016863.1 4621753 4623189 D similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4621753..4623189 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254850.1 CDS STMUK_4407 NC_016863.1 4623542 4624351 R putative inner membrane protein complement(4623542..4624351) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254851.1 CDS STMUK_4408 NC_016863.1 4624376 4625881 R similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase complement(4624376..4625881) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254852.1 CDS STMUK_4409 NC_016863.1 4626321 4627145 D similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); contains putative DNA-binding domain; putative DNA-binding protein 4626321..4627145 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254853.1 CDS STMUK_4410 NC_016863.1 4627405 4628325 D putative endonuclease 4627405..4628325 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254854.1 CDS STMUK_4411 NC_016863.1 4628344 4629354 D similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 4628344..4629354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254855.1 CDS srfJ NC_016863.1 4629451 4630794 D SrfJ (gi|8347262); activated by transcription factor SsrB; similar to Homo sapiens lysosomal glucosyl ceramidase; lysosomal glucosyl ceramidase-like protein 4629451..4630794 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254856.1 CDS STMUK_4413 NC_016863.1 4630795 4631628 D putative endonuclease 4630795..4631628 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254857.1 CDS STMUK_4414 NC_016863.1 4631625 4632791 R similar to Escherichia coli putative transport protein (AAC75382.1); major facilitator superfamily transporter complement(4631625..4632791) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254858.1 CDS STMUK_4415 NC_016863.1 4632852 4634783 R ribokinase family; putative sugar kinase complement(4632852..4634783) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254859.1 CDS STMUK_4416 NC_016863.1 4635206 4637146 D similar to E. coli acetolactate synthase I,valine-sensitive, large subunit (AAC76694.1); Blastp hitto AAC76694.1 (562 aa); putative thiamine pyrophosphate-requiringenzyme 4635206..4637146 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254860.1 CDS STMUK_4418 NC_016863.1 4637327 4638349 D similar to Escherichia coli putative virulence factor (AAC74152.1); oxidoreductase family; putative thiamine pyrophosphate-requiring enzyme; myo-inositol 2-dehydrogenase 4637327..4638349 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254861.1 CDS STMUK_4419 NC_016863.1 4638422 4639648 D similar to Escherichia coli putative transport protein (AAC77235.1); putative permease 4638422..4639648 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254862.1 CDS STMUK_4420 NC_016863.1 4639809 4640624 D putative cytoplasmic protein 4639809..4640624 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254863.1 CDS STMUK_4421 NC_016863.1 4640677 4641561 D putative endonuclease 4640677..4641561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254864.1 CDS yjgA NC_016863.1 4641617 4642168 R similar to Escherichia coli putative alpha helix protein (AAC77191.1); hypothetical protein complement(4641617..4642168) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254865.1 CDS tldE NC_016863.1 4642264 4643616 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4642264..4643616 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254866.1 CDS cybC NC_016863.1 4643715 4644101 D similar to Escherichia coli cytochrome b562 (AAC77193.1); cytochrome b562 4643715..4644101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254867.1 CDS STMUK_4425 NC_016863.1 4644379 4644717 D nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); putative cytoplasmic protein 4644379..4644717 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254868.1 CDS STMUK_4426 NC_016863.1 4644728 4645090 D putative cytoplasmic protein 4644728..4645090 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254869.1 CDS STMUK_4427 NC_016863.1 4645090 4645392 D putative cytoplasmic protein 4645090..4645392 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254870.1 CDS STMUK_4428 NC_016863.1 4645415 4646191 D putative inner membrane protein 4645415..4646191 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254871.1 CDS STMUK_4429 NC_016863.1 4646203 4646847 D putative inner membrane protein 4646203..4646847 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254872.1 CDS STMUK_4430 NC_016863.1 4646906 4648039 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4646906..4648039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254873.1 CDS STMUK_4431 NC_016863.1 4648023 4649141 D L-seryl-tRNA selenium transferase; putative selenocysteine synthase 4648023..4649141 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254874.1 CDS STMUK_4432 NC_016863.1 4649138 4649878 D hypothetical protein 4649138..4649878 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254875.1 CDS STMUK_4433 NC_016863.1 4649895 4651808 D Ntr-type; phosphotransferase system mannitol/fructose-specific IIA component 4649895..4651808 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254876.1 CDS STMUK_4434 NC_016863.1 4651886 4652128 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4651886..4652128 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254877.1 CDS STMUK_4435 NC_016863.1 4652118 4652402 D putative inner membrane protein 4652118..4652402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254878.1 CDS nrdG NC_016863.1 4652406 4652870 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(4652406..4652870) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254879.1 CDS nrdD NC_016863.1 4652991 4655129 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(4652991..4655129) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254880.1 CDS treC NC_016863.1 4655538 4657190 R similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); alternative inducer of maltose system; cytoplasmic; trehalose-6-phosphate hydrolase complement(4655538..4657190) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254881.1 CDS treR NC_016863.1 4658795 4659742 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor complement(4658795..4659742) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254882.1 CDS mgtA NC_016863.1 4660126 4662834 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4660126..4662834 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254883.1 CDS STMUK_4443 NC_016863.1 4662950 4663396 R putative transposase complement(4662950..4663396) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254884.1 CDS yjgF NC_016863.1 4663471 4663857 R putative translation initiation inhibitor complement(4663471..4663857) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254885.1 CDS pyrI NC_016863.1 4663934 4664395 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(4663934..4664395) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254886.1 CDS pyrB NC_016863.1 4664408 4665343 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4664408..4665343) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254887.1 CDS pyrL NC_016863.1 4665379 4665480 R pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide complement(4665379..4665480) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254888.1 CDS STMUK_4448 NC_016863.1 4665460 4665600 D similar to E. coli orf, hypothetical protein(AAC77204.1); Blastp hit to AAC77204.1 (110 aa); putative cytoplasmic protein 4665460..4665600 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254889.1 CDS STMUK_4449 NC_016863.1 4665570 4666058 R similar to Escherichia coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1); putative arginine repressor complement(4665570..4666058) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254890.1 CDS STMUK_4450 NC_016863.1 4666245 4667648 R similar to Escherichia coli putative S-transferase (AAC75358.1); putative arginine repressor complement(4666245..4667648) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254891.1 CDS STMUK_4451 NC_016863.1 4667704 4668708 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4667704..4668708) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254892.1 CDS STMUK_4452 NC_016863.1 4668820 4669752 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4668820..4669752) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254893.1 CDS STMUK_4453 NC_016863.1 4669763 4670983 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4669763..4670983) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254894.1 CDS yjgK NC_016863.1 4671659 4672111 D putative cytoplasmic protein 4671659..4672111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254895.1 CDS argI NC_016863.1 4672185 4673189 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in th; ornithine carbamoyltransferase subunit I complement(4672185..4673189) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254896.1 CDS yjgD NC_016863.1 4673355 4673771 D hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); hypothetical protein 4673355..4673771 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254897.1 CDS miaE NC_016863.1 4673783 4674595 D tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); hydroxylase 4673783..4674595 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254898.1 CDS ytgA NC_016863.1 4674829 4675317 R hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); putative inner membrane protein complement(4674829..4675317) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254899.1 CDS yjgM NC_016863.1 4675424 4675927 R hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); putative acetyltransferase complement(4675424..4675927) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254900.1 CDS yjgN NC_016863.1 4676122 4677309 D hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); putative inner membrane protein 4676122..4677309 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254901.1 CDS valS NC_016863.1 4677451 4680306 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(4677451..4680306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254902.1 CDS holC NC_016863.1 4680306 4680788 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4680306..4680788) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254903.1 CDS pepA NC_016863.1 4680886 4682397 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(4680886..4682397) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254904.1 CDS STMUK_4464 NC_016863.1 4682441 4682560 R putative cytoplasmic protein complement(4682441..4682560) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254905.1 CDS yjgP NC_016863.1 4682792 4683892 D putative permease 4682792..4683892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254906.1 CDS yjgQ NC_016863.1 4683892 4684974 D putative permease 4683892..4684974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254907.1 CDS idnR NC_016863.1 4685169 4686167 R similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); GalR/LacI family; L-idonate regulator complement(4685169..4686167) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254908.1 CDS idnT NC_016863.1 4686231 4687550 R similar to Escherichia coli L-idonate transporter (AAC77222.1); GntP family; L-idonate transport protein complement(4686231..4687550) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254909.1 CDS idnO NC_016863.1 4687612 4688376 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(4687612..4688376) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254910.1 CDS idnD NC_016863.1 4688401 4689432 R NAD-binding; L-idonate 5-dehydrogenase complement(4688401..4689432) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254911.1 CDS idnK NC_016863.1 4689649 4690179 D similar to Escherichia coli gluconate kinase, thermosensitive glucokinase (AAC77225.1); D-gluconate kinase 4689649..4690179 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254912.1 CDS yjgB NC_016863.1 4690207 4691226 R similar to Escherichia coli putative oxidoreductase (AAC77226.1); putative alcohol dehydrogenase complement(4690207..4691226) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254913.1 CDS STMUK_4474 NC_016863.1 4691752 4692039 D similar to Escherichia coli putative prophage integrase (AAC75495.1); putative integrase 4691752..4692039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254914.1 CDS STMUK_4475 NC_016863.1 4692401 4695916 D similar to Escherichia coli putative frameshift suppressor (AAC77264.1); superfamily I; putative DNA helicase 4692401..4695916 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254915.1 CDS STMUK_4476 NC_016863.1 4696013 4697002 D Mrr; putative restriction endonuclease 4696013..4697002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254916.1 CDS STMUK_4477 NC_016863.1 4697115 4699199 R similar to Escherichia coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); putative ATP-dependent Lon protease complement(4697115..4699199) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254917.1 CDS STMUK_4478 NC_016863.1 4699210 4701807 R putative cytoplasmic protein complement(4699210..4701807) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254918.1 CDS STMUK_4479 NC_016863.1 4701810 4702631 R putative cytoplasmic protein complement(4701810..4702631) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254919.1 CDS STMUK_4480 NC_016863.1 4702609 4703700 R putative ABC-type sugar/spermidine/putrescine transport system ATPase component complement(4702609..4703700) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254920.1 CDS STMUK_4481 NC_016863.1 4703700 4707377 R putative type II restriction enzyme methylase subunit complement(4703700..4707377) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254921.1 CDS STMUK_4482 NC_016863.1 4707423 4711064 R putative DNA repair ATPase complement(4707423..4711064) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254922.1 CDS STMUK_4483 NC_016863.1 4711076 4711678 R putative cytoplasmic protein complement(4711076..4711678) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254923.1 CDS STMUK_4484 NC_016863.1 4711675 4712277 R putative inner membrane protein complement(4711675..4712277) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254924.1 CDS STMUK_4485 NC_016863.1 4712470 4712784 R similar to molybdopterin-guanine dinucleotide biosynthesis protein A (Pid: YP_001749801.1).; hypothetical protein complement(4712470..4712784) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254925.1 CDS yeeN NC_016863.1 4713103 4713828 R hypothetical protein complement(4713103..4713828) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254926.1 CDS yjhP NC_016863.1 4714378 4716009 R similar to Escherichia coli putative methyltransferase (AAC77262.1); putative SAM-dependent methyltransferase complement(4714378..4716009) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254927.1 CDS STMUK_4488 NC_016863.1 4716014 4716271 R hypothetical protein complement(4716014..4716271) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254928.1 CDS STMUK_4489 NC_016863.1 4716760 4717368 D putative cytoplasmic protein 4716760..4717368 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254929.1 CDS STMUK_4490 NC_016863.1 4717878 4718615 D putative inner membrane protein 4717878..4718615 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254930.1 CDS STMUK_4491 NC_016863.1 4718891 4719802 D IicA (gi|5616506); putative cytoplasmic protein 4718891..4719802 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254931.1 CDS STMUK_4492 NC_016863.1 4720007 4720468 D putative inner membrane or exported; hypothetical protein 4720007..4720468 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254932.1 CDS STMUK_4493 NC_016863.1 4720465 4721139 R putative dienelactone hydrolase complement(4720465..4721139) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254933.1 CDS uxuR NC_016863.1 4721489 4722262 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4721489..4722262 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254934.1 CDS trpS2 NC_016863.1 4722263 4723276 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(4722263..4723276) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254935.1 CDS STMUK_4496 NC_016863.1 4723994 4724524 D putative cytoplasmic protein 4723994..4724524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254936.1 CDS STMUK_4497 NC_016863.1 4724763 4725497 D similar to Escherichia coli putative resistance proteins (AAC75879.1); putative aspartate racemase 4724763..4725497 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254937.1 CDS yjiE NC_016863.1 4725503 4726411 R similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; putative DNA-binding transcriptional regulator complement(4725503..4726411) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254938.1 CDS iadA NC_016863.1 4726530 4727702 R similar to Escherichia coli isoaspartyl dipeptidase (AAC77284.1); isoaspartyl dipeptidase complement(4726530..4727702) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254939.1 CDS yjiG NC_016863.1 4727715 4728176 R hypothetical protein complement(4727715..4728176) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254940.1 CDS yjiH NC_016863.1 4728173 4729057 R putative inner membrane protein complement(4728173..4729057) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254941.1 CDS yjiJ NC_016863.1 4729717 4730901 R similar to Escherichia coli putative transport protein (AAC77288.1); putative sugar transporter complement(4729717..4730901) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254942.1 CDS yjiN NC_016863.1 4731121 4732392 R putative inner membrane protein complement(4731121..4732392) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254943.1 CDS yjiO NC_016863.1 4732479 4733720 R similar to Escherichia coli putative transport protein (AAC77293.1); MFS family; putative transport protein complement(4732479..4733720) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254944.1 CDS STMUK_4505 NC_016863.1 4734199 4734714 D putative inner membrane protein 4734199..4734714 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254945.1 CDS STMUK_4506 NC_016863.1 4734895 4736265 D similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative NAD-dependent aldehyde dehydrogenase 4734895..4736265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254946.1 CDS STMUK_4507 NC_016863.1 4736360 4736503 R putative cytoplasmic protein complement(4736360..4736503) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254947.1 CDS yjiS NC_016863.1 4736470 4736634 D putative cytoplasmic protein 4736470..4736634 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254948.1 CDS STMUK_4509 NC_016863.1 4736709 4737410 R putative inner membrane protein complement(4736709..4737410) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254949.1 CDS yjiW NC_016863.1 4737484 4737816 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4737484..4737816) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254950.1 CDS hsdS NC_016863.1 4738043 4739452 R S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein complement(4738043..4739452) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254951.1 CDS hsdM NC_016863.1 4739449 4741038 R type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; DNA methylase M complement(4739449..4741038) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254952.1 CDS hsdR NC_016863.1 4741196 4744705 R restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R complement(4741196..4744705) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254953.1 CDS mrr NC_016863.1 4744903 4745817 D similar to Escherichia coli restriction of methylated adenine (AAC77307.1); restriction of methylated adenine; restriction endonuclease 4744903..4745817 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254954.1 CDS STMUK_4515 NC_016863.1 4746086 4746373 D putative inner membrane protein 4746086..4746373 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254955.1 CDS STMUK_4516 NC_016863.1 4746360 4746662 D putative cytoplasmic protein 4746360..4746662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254956.1 CDS yjiA NC_016863.1 4746737 4747693 R putative GTP-binding protein YjiA complement(4746737..4747693) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254957.1 CDS yjiX NC_016863.1 4747704 4747907 R putative cytoplasmic protein complement(4747704..4747907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254958.1 CDS yjiY NC_016863.1 4748002 4750152 R similar to Escherichia coli putative carbon starvation protein (AAC77310.1); putative carbon starvation protein complement(4748002..4750152) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254959.1 CDS tsr NC_016863.1 4750519 4752180 D similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); methyl-accepting chemotaxis protein I 4750519..4752180 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254960.1 CDS STMUK_4521 NC_016863.1 4752504 4755269 D similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 4752504..4755269 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254961.1 CDS STMUK_4522 NC_016863.1 4755371 4755793 D similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4755371..4755793 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254962.1 CDS STMUK_4523 NC_016863.1 4755808 4756269 D similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4755808..4756269 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254963.1 CDS STMUK_4524 NC_016863.1 4756295 4757074 D similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS permease 4756295..4757074 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254964.1 CDS STMUK_4525 NC_016863.1 4757064 4757900 D similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS permease 4757064..4757900 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254965.1 CDS STMUK_4526 NC_016863.1 4757913 4758974 D similar to Escherichia coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); putative glucosamine-fructose-6-phosphate aminotransferase 4757913..4758974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254966.1 CDS STMUK_4527 NC_016863.1 4758971 4760002 D similar to Escherichia coli putative transport protein (AAC76396.1); putative glucosamine-fructose-6-phosphate aminotransferase 4758971..4760002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254967.1 CDS mdoB NC_016863.1 4760136 4762388 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4760136..4762388) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254968.1 CDS yjjA NC_016863.1 4762710 4763171 R similar to Escherichia coli putative glycoprotein/receptor (AAC77316.1); hypothetical protein complement(4762710..4763171) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254969.1 CDS dnaC NC_016863.1 4763229 4763966 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4763229..4763966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254970.1 CDS dnaT NC_016863.1 4763969 4764508 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein; primosomal protein DnaI complement(4763969..4764508) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254971.1 CDS STMUK_4532 NC_016863.1 4764601 4765074 R hypothetical protein complement(4764601..4765074) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254972.1 CDS yjjP NC_016863.1 4765065 4765976 R similar to Escherichia coli putative structural protein (AAC77320.1); hypothetical protein complement(4765065..4765976) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254973.1 CDS yjjQ NC_016863.1 4766554 4767279 D similar to Escherichia coli putative regulator (AAC77321.1); LuxR/UhpA family; putative transcriptional regulator 4766554..4767279 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254974.1 CDS bglJ NC_016863.1 4767240 4767914 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4767240..4767914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254975.1 CDS STMUK_4536 NC_016863.1 4767965 4768423 R putative cytoplasmic protein complement(4767965..4768423) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254976.1 CDS fhuF NC_016863.1 4768574 4769362 R involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase complement(4768574..4769362) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254977.1 CDS STMUK_4538 NC_016863.1 4769483 4770547 R contains putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein complement(4769483..4770547) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254978.1 CDS STMUK_4539 NC_016863.1 4770798 4771034 D putative inner membrane protein 4770798..4771034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254979.1 CDS rsmC NC_016863.1 4771575 4772603 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(4771575..4772603) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254980.1 CDS holD NC_016863.1 4772706 4773143 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4772706..4773143 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254981.1 CDS rimI NC_016863.1 4773088 4773534 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4773088..4773534 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254982.1 CDS yjjG NC_016863.1 4773553 4774233 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4773553..4774233 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254983.1 CDS prfC NC_016863.1 4774325 4775914 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4774325..4775914 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254984.1 CDS osmY NC_016863.1 4776316 4776933 D similar to Escherichia coli hyperosmotically inducible periplasmic protein (AAC77329.1); RpoS-dependent stationary phase gene; hypothetical protein 4776316..4776933 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254985.1 CDS STMUK_4549 NC_016863.1 4777044 4777223 D hypothetical protein 4777044..4777223 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254986.1 CDS yjjU NC_016863.1 4777347 4778420 D putative phosphoesterase 4777347..4778420 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254987.1 CDS yjjV NC_016863.1 4778417 4779190 D putative deoxyribonuclease YjjV 4778417..4779190 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254988.1 CDS yjjW NC_016863.1 4779223 4780086 R similar to Escherichia coli putative activating enzyme (AAC77332.1); pyruvate formate lyase-activating enzyme complement(4779223..4780086) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254989.1 CDS yjjI NC_016863.1 4780058 4781608 R hypothetical protein complement(4780058..4781608) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254990.1 CDS deoC NC_016863.1 4781850 4782647 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4781850..4782647 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254991.1 CDS deoA NC_016863.1 4782771 4784093 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4782771..4784093 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254992.1 CDS deoB NC_016863.1 4784145 4785368 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4784145..4785368 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254993.1 CDS deoD NC_016863.1 4785578 4786297 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4785578..4786297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254994.1 CDS STMUK_4558 NC_016863.1 4786335 4786907 R putative outer membrane protein complement(4786335..4786907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254995.1 CDS stjB NC_016863.1 4786904 4789312 R similar to Escherichia coli putative outer membrane protein (AAC76248.1); putative fimbrial usher protein complement(4786904..4789312) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254996.1 CDS stjC NC_016863.1 4789326 4790033 R member of the periplasmic pilus chaperone family of proteins; putative periplasmic chaperone protein complement(4789326..4790033) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254997.1 CDS STMUK_4561 NC_016863.1 4790111 4790800 R similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein complement(4790111..4790800) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254998.1 CDS STMUK_4562 NC_016863.1 4790848 4791537 R similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein complement(4790848..4791537) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005254999.1 CDS lplA NC_016863.1 4791850 4792866 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-; lipoate-protein ligase A complement(4791850..4792866) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255000.1 CDS smp NC_016863.1 4792900 4793544 R membrane protein; transcribed divergently from serB; hypothetical protein complement(4792900..4793544) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255001.1 CDS serB NC_016863.1 4793661 4794629 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4793661..4794629 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255002.1 CDS radA NC_016863.1 4794713 4796095 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4794713..4796095 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255003.1 CDS nadR NC_016863.1 4796246 4797478 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4796246..4797478 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255004.1 CDS yjjK NC_016863.1 4797596 4799263 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(4797596..4799263) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255005.1 CDS slt NC_016863.1 4799436 4801409 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4799436..4801409 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255006.1 CDS trpR NC_016863.1 4801467 4801793 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4801467..4801793 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255007.1 CDS yjjX NC_016863.1 4801895 4802410 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of; NTPase complement(4801895..4802410) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255008.1 CDS gpmB NC_016863.1 4802458 4803105 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4802458..4803105 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255009.1 CDS rob NC_016863.1 4803102 4803971 R similar to Escherichia coli right origin-binding protein (AAC77349.1); AraC/XylS family; transcriptional regulator complement(4803102..4803971) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255010.1 CDS creA NC_016863.1 4804183 4804656 D hypothetical protein 4804183..4804656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255011.1 CDS creB NC_016863.1 4804669 4805358 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4804669..4805358 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255012.1 CDS creC NC_016863.1 4805358 4806782 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4805358..4806782 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255013.1 CDS creD NC_016863.1 4806840 4808189 D similar to Escherichia coli tolerance to colicin E2 (AAC77353.1); hypothetical protein 4806840..4808189 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255014.1 CDS sthE NC_016863.1 4808247 4809332 R putative major fimbrial subunit complement(4808247..4809332) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255015.1 CDS sthD NC_016863.1 4809373 4809930 R similar to Escherichia coli fimbrial morphology (AAC77275.1); putative fimbrial subunit complement(4809373..4809930) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255016.1 CDS sthB NC_016863.1 4809948 4812485 R similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher protein complement(4809948..4812485) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255017.1 CDS sthA NC_016863.1 4812531 4813214 R similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone complement(4812531..4813214) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255018.1 CDS STMUK_4582 NC_016863.1 4813285 4813830 R similar to Escherichia coli fimbrial morphology (AAC77274.1); putative fimbrial chaperone complement(4813285..4813830) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255019.1 CDS STMUK_4583 NC_016863.1 4814169 4814840 R putative inner membrane protein complement(4814169..4814840) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255020.1 CDS STMUK_4584 NC_016863.1 4815225 4815539 R hypothetical protein complement(4815225..4815539) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255021.1 CDS arcA NC_016863.1 4815806 4816522 R similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways; two-component response regulator complement(4815806..4816522) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255022.1 CDS yjjY NC_016863.1 4816618 4816758 D putative inner membrane protein 4816618..4816758 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255023.1 CDS lasT NC_016863.1 4817158 4817844 D member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 4817158..4817844 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255024.1 CDS STMUK_p101 NC_016864.1 93011 42 D hypothetical protein join(93011..93277,1..42) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255025.1 CDS STMUK_p001 NC_016864.1 484 780 R putative cytoplasmic protein complement(484..780) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255026.1 CDS STMUK_p002 NC_016864.1 1264 1785 R hypothetical protein complement(1264..1785) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255027.1 CDS ccdA NC_016864.1 2461 2679 D toxin addiction system: antidote 2461..2679 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255028.1 CDS ccdB NC_016864.1 2681 2986 D toxin addiction system: toxin 2681..2986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255029.1 CDS STMUK_p005 NC_016864.1 2988 3278 D putative cytoplasmic protein 2988..3278 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255030.1 CDS STMUK_p006 NC_016864.1 3275 3796 D putative cytoplasmic protein 3275..3796 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255031.1 CDS rsdB NC_016864.1 3831 4613 D resolvase 3831..4613 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255032.1 CDS STMUK_p008 NC_016864.1 4622 5173 D diguanylate cyclase 4622..5173 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255033.1 CDS STMUK_p009 NC_016864.1 5842 6327 D putative inner membrane protein 5842..6327 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255034.1 CDS spvD NC_016864.1 7096 7446 R hypothetical protein complement(7096..7446) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255035.1 CDS STMUK_p011 NC_016864.1 7664 7927 D putative transposase, IS200-like protein 7664..7927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255036.1 CDS spvD NC_016864.1 8054 8704 R hypothetical protein complement(8054..8704) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255037.1 CDS spvC NC_016864.1 8965 9690 R hypothetical protein complement(8965..9690) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255038.1 CDS spvB NC_016864.1 9971 11740 R hypothetical protein complement(9971..11740) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255039.1 CDS spvA NC_016864.1 11922 12689 R outer membrane protein complement(11922..12689) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255040.1 CDS spvR NC_016864.1 13201 14094 R LysR family transcriptional regulator complement(13201..14094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255041.1 CDS STMUK_p017 NC_016864.1 14702 15739 D putative integrase protein 14702..15739 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255042.1 CDS STMUK_p018 NC_016864.1 15928 16953 R putative phosphoribulokinase / uridine kinase family complement(15928..16953) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255043.1 CDS rlgA NC_016864.1 16886 18550 R putative resolvase complement(16886..18550) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255044.1 CDS rlgA NC_016864.1 18534 19094 R putative resolvase complement(18534..19094) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255045.1 CDS STMUK_p021 NC_016864.1 19301 20041 R putative carbonic anhydrase complement(19301..20041) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255046.1 CDS STMUK_p022 NC_016864.1 20696 21184 R putative cytoplasmic protein complement(20696..21184) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255047.1 CDS tlpA NC_016864.1 21443 22558 D alpha-helical coiled coil protein 21443..22558 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255048.1 CDS STMUK_p024 NC_016864.1 22644 23060 D putative DNA polymerase III epsilon subunit (3'-5' exonuclease) 22644..23060 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255049.1 CDS STMUK_p025 NC_016864.1 22754 23080 R putative cytoplasmic protein complement(22754..23080) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255050.1 CDS umuC NC_016864.1 24234 25175 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(24234..25175) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255051.1 CDS parA NC_016864.1 25590 26795 D plasmid partition protein A 25590..26795 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255052.1 CDS parB NC_016864.1 26792 27769 D plasmid partition protein B 26792..27769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255053.1 CDS umuC NC_016864.1 27851 29125 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(27851..29125) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255054.1 CDS samA NC_016864.1 29125 29547 R related to umuDC operon; mutagenesis by UV and mutagens complement(29125..29547) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255055.1 CDS STMUK_p031 NC_016864.1 30058 30528 D putative cytoplasmic protein 30058..30528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255056.1 CDS STMUK_p032 NC_016864.1 30521 30877 D putative cytoplasmic protein 30521..30877 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255057.1 CDS STMUK_p033 NC_016864.1 31259 31939 D putative adenine-specific DNA methylase 31259..31939 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255058.1 CDS STMUK_p034 NC_016864.1 31939 32160 D putative cytoplasmic protein 31939..32160 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255059.1 CDS STMUK_p035 NC_016864.1 32701 33465 D putative inner membrane protein 32701..33465 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255060.1 CDS STMUK_p036 NC_016864.1 33961 34395 D putative cytoplasmic protein 33961..34395 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255061.1 CDS STMUK_p037 NC_016864.1 34462 34896 D putative cytoplasmic protein 34462..34896 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255062.1 CDS STMUK_p038 NC_016864.1 35132 35455 D putative inner membrane protein 35132..35455 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255063.1 CDS ssbB NC_016864.1 36186 36704 D single-strand binding protein 36186..36704 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255064.1 CDS STMUK_p040 NC_016864.1 36759 37001 D putative cytoplasmic protein 36759..37001 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255065.1 CDS STMUK_p041 NC_016864.1 37070 39067 D putative ParB-like nuclease domain protein 37070..39067 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255066.1 CDS psiB NC_016864.1 39107 39541 D Plasmid SOS inhibition 39107..39541 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255067.1 CDS psiA NC_016864.1 39538 40275 D Plasmid SOS inhibition 39538..40275 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255068.1 CDS STMUK_p044 NC_016864.1 41914 42384 R putative transglycosylase complement(41914..42384) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255069.1 CDS traM NC_016864.1 42799 43179 D conjugative transfer: mating signal 42799..43179 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255070.1 CDS traJ NC_016864.1 43372 44058 D conjugative transfer: regulation 43372..44058 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255071.1 CDS traY NC_016864.1 44059 44379 D conjugative transfer: oriT nicking 44059..44379 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255072.1 CDS traA NC_016864.1 44421 44783 D conjugative transfer: fimbrial subunit 44421..44783 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255073.1 CDS traL NC_016864.1 44798 45109 D conjugative transfer: assembly 44798..45109 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255074.1 CDS traE NC_016864.1 45131 45697 D conjugative transfer: assembly 45131..45697 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255075.1 CDS traK NC_016864.1 45684 46424 D conjugative transfer: assembly 45684..46424 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255076.1 CDS traB NC_016864.1 46424 47845 D conjugative transfer: assembly 46424..47845 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255077.1 CDS traP NC_016864.1 47835 48431 D conjugative transfer 47835..48431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255078.1 CDS trbD NC_016864.1 48409 48654 D conjugative transfer protein 48409..48654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255079.1 CDS traV NC_016864.1 48651 49166 D conjugative transfer: assembly 48651..49166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255080.1 CDS traR NC_016864.1 49301 49522 D conjugative transfer 49301..49522 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255081.1 CDS STMUK_p057 NC_016864.1 49515 49982 D conjugative transfer protein 49515..49982 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255082.1 CDS traC NC_016864.1 50378 53026 D conjugative transfer: assembly 50378..53026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255083.1 CDS trbI NC_016864.1 53001 53387 D conjugative transfer 53001..53387 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255084.1 CDS traW NC_016864.1 53384 54016 D conjugative transfer: assembly 53384..54016 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255085.1 CDS traU NC_016864.1 54013 55005 D conjugative transfer: assembly 54013..55005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255086.1 CDS STMUK_p062 NC_016864.1 55024 55332 D conjugative transfer protein 55024..55332 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255087.1 CDS trbC NC_016864.1 55317 55955 D conjugative transfer: assembly 55317..55955 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255088.1 CDS traN NC_016864.1 56408 58234 D conjugative transfer: aggregate stability 56408..58234 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255089.1 CDS trbE NC_016864.1 58245 58460 D conjugative transfer 58245..58460 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255090.1 CDS traF NC_016864.1 58472 59221 D conjugative transfer: assembly 58472..59221 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255091.1 CDS traQ NC_016864.1 59435 59728 D conjugative transfer: fimbrial synthesis 59435..59728 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255092.1 CDS trbB NC_016864.1 59715 60263 D conjugative transfer 59715..60263 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255093.1 CDS traH NC_016864.1 60253 61635 D conjugative transfer: assembly 60253..61635 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255094.1 CDS traG NC_016864.1 61632 64454 D conjugative transfer: assembly abd aggregate stability 61632..64454 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255095.1 CDS traS NC_016864.1 64470 64964 D conjugative transfer: surface exclusion 64470..64964 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255096.1 CDS traT NC_016864.1 65000 65731 D conjugative transfer: surface exclusion 65000..65731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255097.1 CDS traD NC_016864.1 66108 68270 D conjugative transfer: DNA transport 66108..68270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255098.1 CDS trbH NC_016864.1 68270 68989 D conjugative transfer 68270..68989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255099.1 CDS STMUK_p075 NC_016864.1 68279 68677 R similar to mvpA, Shigella flexneri; MvpA-like protein complement(68279..68677) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255100.1 CDS STMUK_p076 NC_016864.1 68677 68907 R putative cytoplasmic protein complement(68677..68907) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255101.1 CDS traI NC_016864.1 68986 74244 D conjugative transfer: oriT nicking-unwinding 68986..74244 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255102.1 CDS traX NC_016864.1 74264 75004 D conjugative transfer: fimbrial acetylation 74264..75004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255103.1 CDS finO NC_016864.1 75059 75622 D conjugative transfer: regulation 75059..75622 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255104.1 CDS STMUK_p080 NC_016864.1 75737 76021 D putative cytoplasmic protein 75737..76021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255105.1 CDS repC NC_016864.1 76976 77242 D DNA replication 76976..77242 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255106.1 CDS repA3 NC_016864.1 77365 77487 D DNA replication 77365..77487 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255107.1 CDS tap NC_016864.1 77492 77569 D replication of plasmid 77492..77569 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255108.1 CDS repA NC_016864.1 77550 78431 D DNA replication 77550..78431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255109.1 CDS STMUK_p086 NC_016864.1 79372 79512 D putative outer membrane protein 79372..79512 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255110.1 CDS srgC NC_016864.1 79609 80367 R sdiA-regulated protein; AraC family transcriptional regulator complement(79609..80367) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255111.1 CDS rcK NC_016864.1 80634 81191 R resistance to complement killing complement(80634..81191) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255112.1 CDS srgB NC_016864.1 81281 82180 R sdiA-regulated protein; putative outer membrane protein complement(81281..82180) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255113.1 CDS srgA NC_016864.1 82313 82966 R sdiA-regulated protein; putative thiol-disulfide isomerase or thioredoxin complement(82313..82966) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255114.1 CDS STMUK_p091 NC_016864.1 83211 83561 R LuxR family regulatory protein complement(83211..83561) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255115.1 CDS pefI NC_016864.1 83546 83758 R plasmid-encoded fimbriae; regulatory complement(83546..83758) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255116.1 CDS STMUK_p093 NC_016864.1 84190 85065 R putative outer membrane protein complement(84190..85065) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255117.1 CDS STMUK_p094 NC_016864.1 85318 85875 R putative outer membrane protein complement(85318..85875) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255118.1 CDS pefD NC_016864.1 85890 86582 R plasmid-encoded fimbriae;chaperone complement(85890..86582) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255119.1 CDS pefC NC_016864.1 86575 88983 R plasmid-encoded fimbriae; usher protein complement(86575..88983) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255120.1 CDS pefA NC_016864.1 89211 89729 R plasmid-encoded fimbriae; major fimbrial subunit complement(89211..89729) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255121.1 CDS pefB NC_016864.1 90004 90306 R plasmid-encoded fimbriae;regulation complement(90004..90306) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255122.1 CDS STMUK_p099 NC_016864.1 91203 91406 D hypothetical protein 91203..91406 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YP_005255123.1 CDS repA2 NC_016864.1 92278 93267 R DNA replication complement(92278..93267) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0252 tRNA ileV NC_016863.1 290788 290861 D tRNA-Ile 290788..290861 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0253 tRNA alaV NC_016863.1 290974 291046 D tRNA-Asx 290974..291046 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0256 tRNA aspU NC_016863.1 294826 294899 D tRNA-Val 294826..294899 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0267 tRNA aspV NC_016863.1 304265 304338 D tRNA-Sec 304265..304338 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0330 tRNA thrW NC_016863.1 368780 368852 D tRNA-Thr 368780..368852 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0560 tRNA argU NC_016863.1 614261 614334 D tRNA-Arg 614261..614334 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0678 tRNA glnX NC_016863.1 738507 738578 R tRNA-Gln complement(738507..738578) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0679 tRNA glnV NC_016863.1 738625 738696 R tRNA-Gln complement(738625..738696) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0680 tRNA metU NC_016863.1 738746 738819 R tRNA-OTHER complement(738746..738819) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0681 tRNA glnW NC_016863.1 738838 738909 R tRNA-Gln complement(738838..738909) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0682 tRNA glnU NC_016863.1 738948 739019 R tRNA-Gln complement(738948..739019) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0683 tRNA leuW NC_016863.1 739046 739127 R tRNA-Leu complement(739046..739127) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0684 tRNA metT NC_016863.1 739139 739212 R tRNA-Met complement(739139..739212) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0757 tRNA lysT NC_016863.1 819271 819343 D tRNA-Lys 819271..819343 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0758 tRNA valT NC_016863.1 819478 819550 D tRNA-Val 819478..819550 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0759 tRNA lysW NC_016863.1 819557 819629 D tRNA-Lys 819557..819629 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0760 tRNA lysY NC_016863.1 819682 819754 D tRNA-Lys 819682..819754 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0761 tRNA lysZ NC_016863.1 819892 819964 D tRNA-Lys 819892..819964 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0917 tRNA serW NC_016863.1 985060 985144 R tRNA-Ser complement(985060..985144) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1055 tRNA serT NC_016863.1 1132956 1133040 D tRNA-Ser 1132956..1133040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1102 tRNA serX NC_016863.1 1182195 1182279 R tRNA-Ser complement(1182195..1182279) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1215 tRNA STMUK_1215 NC_016863.1 1291374 1291447 D tRNA-OTHER 1291374..1291447 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1229 tRNA STMUK_1229 NC_016863.1 1303812 1303885 D tRNA-OTHER 1303812..1303885 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1389 tRNA valW NC_016863.1 1459807 1459880 R tRNA-Val complement(1459807..1459880) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1390 tRNA valV NC_016863.1 1459894 1459967 R tRNA-Val complement(1459894..1459967) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1730 tRNA tyrT NC_016863.1 1811451 1811532 D tRNA-Tyr 1811451..1811532 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1731 tRNA tyrV NC_016863.1 1811740 1811821 D tRNA-Tyr 1811740..1811821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1921 tRNA leuZ NC_016863.1 1994963 1995046 R tRNA-Leu complement(1994963..1995046) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1922 tRNA cysT NC_016863.1 1995061 1995131 R tRNA-Cys complement(1995061..1995131) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_1923 tRNA glyW NC_016863.1 1995191 1995263 R tRNA-Gly complement(1995191..1995263) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2030 tRNA serU NC_016863.1 2081921 2082007 R tRNA-Ser complement(2081921..2082007) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2032 tRNA asnT NC_016863.1 2082994 2083066 D tRNA-Asn 2082994..2083066 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2033 tRNA asnT NC_016863.1 2083964 2084036 D tRNA-Asn 2083964..2084036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2042 tRNA asnW NC_016863.1 2093909 2093981 R tRNA-Asn complement(2093909..2093981) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2044 tRNA asnU NC_016863.1 2095739 2095811 D tRNA-Asn 2095739..2095811 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2259 tRNA STMUK_2259 NC_016863.1 2330494 2330567 D tRNA-Pro 2330494..2330567 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2424 tRNA argW NC_016863.1 2505567 2505638 D tRNA-Arg 2505567..2505638 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2442 tRNA alaX NC_016863.1 2528684 2528756 R tRNA-Ala complement(2528684..2528756) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2443 tRNA alaW NC_016863.1 2528802 2528874 R tRNA-Ala complement(2528802..2528874) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2447 tRNA valU NC_016863.1 2531580 2531652 D tRNA-Val 2531580..2531652 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2448 tRNA valX NC_016863.1 2531701 2531773 D tRNA-Val 2531701..2531773 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2449 tRNA valY NC_016863.1 2531818 2531890 D tRNA-Val 2531818..2531890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2450 tRNA lysV NC_016863.1 2531898 2531970 D tRNA-Lys 2531898..2531970 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2650 tRNA STMUK_2650 NC_016863.1 2761383 2761456 R tRNA-OTHER complement(2761383..2761456) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2694 tRNA gltW NC_016863.1 2802128 2802200 R tRNA-Sec complement(2802128..2802200) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2810 tRNA STMUK_2810 NC_016863.1 2938416 2938489 R tRNA-Arg complement(2938416..2938489) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2811 tRNA STMUK_2811 NC_016863.1 2938686 2938759 R tRNA-Arg complement(2938686..2938759) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2812 tRNA STMUK_2812 NC_016863.1 2938825 2938898 R tRNA-Arg complement(2938825..2938898) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2813 tRNA STMUK_2813 NC_016863.1 2938964 2939037 R tRNA-Arg complement(2938964..2939037) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2814 tRNA STMUK_2814 NC_016863.1 2939044 2939133 R tRNA-Ser complement(2939044..2939133) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2977 tRNA metZ NC_016863.1 3108442 3108515 D tRNA-Met 3108442..3108515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2978 tRNA metW NC_016863.1 3108548 3108621 D tRNA-Met 3108548..3108621 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3025 tRNA glyU NC_016863.1 3164169 3164239 R tRNA-Gly complement(3164169..3164239) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3104 tRNA pheV NC_016863.1 3242004 3242076 D tRNA-Phe 3242004..3242076 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3202 tRNA ileX NC_016863.1 3344864 3344936 D tRNA-Ile 3344864..3344936 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3273 tRNA metY NC_016863.1 3419297 3419370 R tRNA-Met complement(3419297..3419370) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3276 tRNA leuU NC_016863.1 3422546 3422629 R tRNA-Leu complement(3422546..3422629) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3380 tRNA thrV NC_016863.1 3528290 3528362 R tRNA-Thr complement(3528290..3528362) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3383 tRNA STMUK_3383 NC_016863.1 3531772 3531844 R tRNA-Gln complement(3531772..3531844) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3621 tRNA proK NC_016863.1 3781720 3781793 R tRNA-Pro complement(3781720..3781793) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3737 tRNA selC NC_016863.1 3909875 3909965 D tRNA-OTHER 3909875..3909965 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3879 tRNA gltU NC_016863.1 4063058 4063130 D tRNA-Trp 4063058..4063130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3882 tRNA aspT NC_016863.1 4066580 4066659 D tRNA-Sec 4066580..4066659 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3883 tRNA trpT NC_016863.1 4066665 4066737 D tRNA-OTHER 4066665..4066737 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3917 tRNA argX NC_016863.1 4102205 4102278 D tRNA-Arg 4102205..4102278 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3918 tRNA hisR NC_016863.1 4102336 4102408 D tRNA-His 4102336..4102408 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3919 tRNA leuT NC_016863.1 4102432 4102515 D tRNA-Leu 4102432..4102515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3920 tRNA proM NC_016863.1 4102561 4102634 D tRNA-Pro 4102561..4102634 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3973 tRNA ileT NC_016863.1 4158967 4159040 D tRNA-Ile 4158967..4159040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3974 tRNA alaT NC_016863.1 4159155 4159227 D tRNA-Asx 4159155..4159227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4117 tRNA ileU NC_016863.1 4313932 4314005 D tRNA-Val 4313932..4314005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4118 tRNA STMUK_4118 NC_016863.1 4314120 4314192 D tRNA-Ala 4314120..4314192 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4125 tRNA thrU NC_016863.1 4321233 4321305 D tRNA-Thr 4321233..4321305 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4126 tRNA tyrU NC_016863.1 4321317 4321398 D tRNA-Tyr 4321317..4321398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4127 tRNA glyT NC_016863.1 4321518 4321589 D tRNA-Gly 4321518..4321589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4128 tRNA thrT NC_016863.1 4321599 4321671 D tRNA-Thr 4321599..4321671 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4162 tRNA gltV NC_016863.1 4357489 4357561 D tRNA-Sec 4357489..4357561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4306 tRNA pheR NC_016863.1 4527014 4527086 R tRNA-Phe complement(4527014..4527086) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4337 tRNA glyV NC_016863.1 4556849 4556921 D tRNA-Gly 4556849..4556921 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4338 tRNA glyX NC_016863.1 4557081 4557153 D tRNA-Gly 4557081..4557153 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4339 tRNA glyY NC_016863.1 4557313 4557385 D tRNA-Gly 4557313..4557385 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4473 tRNA leuX NC_016863.1 4691434 4691515 D tRNA-Leu 4691434..4691515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4540 tRNA leuV NC_016863.1 4771050 4771133 R tRNA-Leu complement(4771050..4771133) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4541 tRNA leuP NC_016863.1 4771168 4771251 R tRNA-Leu complement(4771168..4771251) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4542 tRNA leuQ NC_016863.1 4771282 4771365 R tRNA-Leu complement(4771282..4771365) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0251 rRNA rrsH NC_016863.1 289174 290703 D 16S ribosomal RNA 289174..290703 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0254 rRNA rrlH NC_016863.1 291224 294312 D 23S ribosomal RNA 291224..294312 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_0255 rRNA rrfH NC_016863.1 294511 294625 D 5S ribosomal RNA 294511..294625 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2692 rRNA rrfG NC_016863.1 2798529 2798643 R 5S ribosomal RNA complement(2798529..2798643) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2693 rRNA rrlG NC_016863.1 2798843 2801932 R 23S ribosomal RNA complement(join(2798843..2801314,2801377..2801932)) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_2695 rRNA rrsG NC_016863.1 2802294 2803823 R 16S ribosomal RNA complement(2802294..2803823) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3379 rRNA rrfF NC_016863.1 3528132 3528246 R 5S ribosomal RNA complement(3528132..3528246) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3381 rRNA rrfD NC_016863.1 3528377 3528491 R 5S ribosomal RNA complement(3528377..3528491) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3382 rRNA rrlD NC_016863.1 3528587 3531574 R 23S ribosomal RNA complement(3528587..3531574) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3384 rRNA rrsD NC_016863.1 3531936 3533465 R 16S ribosomal RNA complement(3531936..3533465) Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3878 rRNA rrsC NC_016863.1 4061437 4062967 D 16S ribosomal RNA 4061437..4062967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3880 rRNA rrlC NC_016863.1 4063329 4066316 D 23S ribosomal RNA 4063329..4066316 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3881 rRNA rrfC NC_016863.1 4066412 4066526 D 5S ribosomal RNA 4066412..4066526 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3972 rRNA rrsA NC_016863.1 4157363 4158892 D 16S ribosomal RNA 4157363..4158892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3975 rRNA rrlA NC_016863.1 4159413 4162400 D 23S ribosomal RNA 4159413..4162400 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_3976 rRNA rrfA NC_016863.1 4162496 4162610 D 5S ribosomal RNA 4162496..4162610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4116 rRNA rrsB NC_016863.1 4312328 4313857 D 16S ribosomal RNA 4312328..4313857 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4119 rRNA rrlB NC_016863.1 4314378 4317365 D 23S ribosomal RNA 4314378..4317365 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4120 rRNA rrfB NC_016863.1 4317564 4317678 D 5S ribosomal RNA 4317564..4317678 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4161 rRNA rrsE NC_016863.1 4355869 4357398 D 16S ribosomal RNA 4355869..4357398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4163 rRNA rrlE NC_016863.1 4357760 4360747 D 23S ribosomal RNA 4357760..4360747 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 STMUK_4164 rRNA rrfE NC_016863.1 4360946 4361060 D 5S ribosomal RNA 4360946..4361060 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1