-- dump date 20140620_055557 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 1171376000001 SEQ_END SEQ_END NC_021151.1 4852606 4852606 DR NC_021151.1; contig end 4852606..4852606 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1171376000002 SEQ_END SEQ_END NC_021155.1 148711 148711 DR NC_021155.1; contig end 148711..148711 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1171376000003 SEQ_END SEQ_END NC_021156.1 11067 11067 DR NC_021156.1; contig end 11067..11067 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1171376000004 SEQ_END SEQ_END NC_021157.1 4675 4675 DR NC_021157.1; contig end 4675..4675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901110.1 CDS thrA NC_021151.1 43 2505 D COG0527 Aspartokinases; bifunctional aspartokinase I/homoserine dehydrogenase I 43..2505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901111.1 CDS STU288_00010 NC_021151.1 2507 3436 D COG0083 Homoserine kinase; homoserine kinase 2507..3436 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901112.1 CDS STU288_00015 NC_021151.1 3440 4726 D COG0498 Threonine synthase; threonine synthase 3440..4726 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901113.1 CDS STU288_00020 NC_021151.1 4820 5593 R COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4820..5593) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901114.1 CDS STU288_00025 NC_021151.1 5672 7102 R COG1115 Na+/alanine symporter; amino-acid transport protein complement(5672..7102) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901115.1 CDS STU288_00030 NC_021151.1 7371 8324 D COG0176 Transaldolase; transaldolase B 7371..8324 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901116.1 CDS mogA NC_021151.1 8435 9025 D COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 8435..9025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901117.1 CDS STU288_00040 NC_021151.1 9082 9648 R COG1584 Predicted membrane protein; hypothetical protein complement(9082..9648) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901118.1 CDS STU288_00045 NC_021151.1 9798 10511 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(9798..10511) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901119.1 CDS STU288_00050 NC_021151.1 10547 10951 R hypothetical protein complement(10547..10951) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901120.1 CDS dnaK NC_021151.1 11299 13215 D COG0443 Molecular chaperone; molecular chaperone DnaK 11299..13215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901121.1 CDS STU288_00060 NC_021151.1 13301 14440 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 13301..14440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901122.1 CDS STU288_00065 NC_021151.1 14720 15667 D COG0583 Transcriptional regulator; putative transcriptional regulator 14720..15667 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901123.1 CDS STU288_00070 NC_021151.1 15794 16138 D hypothetical protein 15794..16138 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901124.1 CDS STU288_00075 NC_021151.1 16199 16732 R COG3926 Putative secretion activating protein; hypothetical protein complement(16199..16732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901125.1 CDS STU288_00080 NC_021151.1 16749 17192 R COG3710 DNA-binding winged-HTH domains; hypothetical protein complement(16749..17192) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901126.1 CDS STU288_00085 NC_021151.1 17573 19672 D COG3325 Chitinase; chitinase 17573..19672 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901127.1 CDS STU288_00090 NC_021151.1 19764 22760 D chitinase 19764..22760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901128.1 CDS STU288_00095 NC_021151.1 23041 23745 D hypothetical protein 23041..23745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901129.1 CDS STU288_00100 NC_021151.1 24175 24717 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfA 24175..24717 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901130.1 CDS STU288_00105 NC_021151.1 24818 25504 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein BcfB 24818..25504 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901131.1 CDS STU288_00110 NC_021151.1 25509 28130 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 25509..28130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901132.1 CDS STU288_00115 NC_021151.1 28131 29138 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfD 28131..29138 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901133.1 CDS STU288_00120 NC_021151.1 29139 29684 D fimbrial protein BcfE 29139..29684 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901134.1 CDS STU288_00125 NC_021151.1 29700 30218 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfF 29700..30218 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901135.1 CDS STU288_00130 NC_021151.1 30211 30915 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone BcfG 30211..30915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901136.1 CDS STU288_00135 NC_021151.1 30980 31825 D COG1651 Protein-disulfide isomerase; hypothetical protein 30980..31825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901137.1 CDS STU288_00140 NC_021151.1 31864 32151 D hypothetical protein 31864..32151 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901138.1 CDS STU288_00145 NC_021151.1 32251 32700 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; hypothetical protein complement(32251..32700) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901139.1 CDS STU288_00150 NC_021151.1 33070 34074 D COG0583 Transcriptional regulator; putative transcriptional regulator 33070..34074 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901140.1 CDS STU288_00155 NC_021151.1 34082 34522 R COG3710 DNA-binding winged-HTH domains; putative transcriptional regulator complement(34082..34522) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901141.1 CDS STU288_00160 NC_021151.1 35045 36763 D sulfatase 35045..36763 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901142.1 CDS STU288_00165 NC_021151.1 36809 38380 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; secreted 5'-nucleotidase complement(36809..38380) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901143.1 CDS STU288_00170 NC_021151.1 38479 39240 R hypothetical protein complement(38479..39240) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901144.1 CDS STU288_00175 NC_021151.1 39837 41330 D COG3119 Arylsulfatase A and related enzymes; sulfatase 39837..41330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901145.1 CDS STU288_00180 NC_021151.1 41429 42619 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); sulfatase regulatory protein 41429..42619 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901146.1 CDS STU288_00185 NC_021151.1 42644 43891 D putative cytoplasmic protein 42644..43891 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901147.1 CDS STU288_00190 NC_021151.1 44018 45733 D sulfatase 44018..45733 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901148.1 CDS nhaA NC_021151.1 45896 47062 D COG3004 Na+/H+ antiporter; pH-dependent sodium/proton antiporter 45896..47062 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901149.1 CDS nhaR NC_021151.1 47130 48023 D COG0583 Transcriptional regulator; transcriptional activator NhaR 47130..48023 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901150.1 CDS STU288_00205 NC_021151.1 48078 50117 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; glycosyl hydrolase complement(48078..50117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901151.1 CDS STU288_00210 NC_021151.1 50157 51530 R COG2211 Na+/melibiose symporter and related transporters; putative sodium galactoside symporter complement(50157..51530) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901152.1 CDS rpsT NC_021151.1 51986 52249 R COG0268 Ribosomal protein S20; 30S ribosomal protein S20 complement(51986..52249) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901153.1 CDS STU288_00220 NC_021151.1 52355 52570 D putative cytoplasmic protein 52355..52570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901154.1 CDS STU288_00225 NC_021151.1 52578 53516 D COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 52578..53516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901155.1 CDS ileS NC_021151.1 53561 56395 D COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA ligase 53561..56395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901156.1 CDS lspA NC_021151.1 56395 56895 D COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 56395..56895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901157.1 CDS STU288_00240 NC_021151.1 57050 57499 D COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 57050..57499 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901158.1 CDS ispH NC_021151.1 57502 58452 D COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57502..58452 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901159.1 CDS STU288_00250 NC_021151.1 58652 59854 D putative nitrite reductase 58652..59854 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901160.1 CDS STU288_00255 NC_021151.1 59870 60790 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase RihC 59870..60790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901161.1 CDS STU288_00260 NC_021151.1 60812 61498 R COG4565 Response regulator of citrate/malate metabolism; putative C4-dicarboxylate response regulator dctR complement(60812..61498) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901162.1 CDS STU288_00265 NC_021151.1 61500 63119 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor kinase DpiB complement(61500..63119) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901163.1 CDS STU288_00270 NC_021151.1 63254 64555 R COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; putative oxalacetate decarboxylase subunit beta complement(63254..64555) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901164.1 CDS STU288_00275 NC_021151.1 64568 66343 R COG5016 Pyruvate/oxaloacetate carboxyltransferase; oxaloacetate decarboxylase complement(64568..66343) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901165.1 CDS STU288_00280 NC_021151.1 66360 66599 R COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma complement(66360..66599) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901166.1 CDS STU288_00285 NC_021151.1 66758 68098 R COG3493 Na+/citrate symporter; citrate-sodium symporter complement(66758..68098) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901167.1 CDS STU288_00290 NC_021151.1 68355 69386 D COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 68355..69386 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901168.1 CDS STU288_00295 NC_021151.1 69416 69709 D COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma 69416..69709 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901169.1 CDS STU288_00300 NC_021151.1 69706 70575 D COG2301 Citrate lyase beta subunit; citrate lyase subunit beta 69706..70575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901170.1 CDS STU288_00305 NC_021151.1 70586 72106 D COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 70586..72106 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901171.1 CDS STU288_00310 NC_021151.1 72106 72657 D COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); putative cytoplasmic protein 72106..72657 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901172.1 CDS STU288_00315 NC_021151.1 72635 73543 D COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase 72635..73543 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901173.1 CDS STU288_00320 NC_021151.1 73723 74544 D COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 73723..74544 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901174.1 CDS STU288_00325 NC_021151.1 74670 74945 R hypothetical protein complement(74670..74945) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901175.1 CDS STU288_00330 NC_021151.1 75586 76734 D COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 75586..76734 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901176.1 CDS carB NC_021151.1 76753 79980 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 76753..79980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901177.1 CDS STU288_00340 NC_021151.1 80254 80649 D DNA-binding transcriptional activator CaiF 80254..80649 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901178.1 CDS STU288_00345 NC_021151.1 80726 81322 R COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carnitine operon protein CaiE complement(80726..81322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901179.1 CDS STU288_00350 NC_021151.1 81431 82216 R COG1024 Enoyl-CoA hydratase/carnithine racemase; carnitinyl-CoA dehydratase complement(81431..82216) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901180.1 CDS caiC NC_021151.1 82270 83823 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; crotonobetaine/carnitine-CoA ligase complement(82270..83823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901181.1 CDS STU288_00360 NC_021151.1 83886 85103 R COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; crotonobetainyl-CoA:carnitine CoA-transferase complement(83886..85103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901182.1 CDS STU288_00365 NC_021151.1 85215 86357 R COG1960 Acyl-CoA dehydrogenases; crotonobetainyl-CoA dehydrogenase complement(85215..86357) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901183.1 CDS STU288_00370 NC_021151.1 86392 87909 R COG1292 Choline-glycine betaine transporter; L-carnitine/gamma-butyrobetaine antiporter complement(86392..87909) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901184.1 CDS STU288_00375 NC_021151.1 88137 88322 D hypothetical protein 88137..88322 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901185.1 CDS STU288_00380 NC_021151.1 88390 89160 D COG2086 Electron transfer flavoprotein, beta subunit; electron transfer flavoprotein FixA 88390..89160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901186.1 CDS fixB NC_021151.1 89176 90117 D COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein FixB 89176..90117 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901187.1 CDS STU288_00390 NC_021151.1 90167 91453 D COG0644 Dehydrogenases (flavoproteins); oxidoreductase FixC 90167..91453 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901188.1 CDS STU288_00395 NC_021151.1 91450 91737 D COG2440 Ferredoxin-like protein; ferredoxin-like protein FixX 91450..91737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901189.1 CDS STU288_00400 NC_021151.1 91884 93224 D COG0477 Permeases of the major facilitator superfamily; metabolite transport protein 91884..93224 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901190.1 CDS STU288_00405 NC_021151.1 93313 93543 D lipoprotein 93313..93543 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901191.1 CDS STU288_00410 NC_021151.1 93837 94253 D hypothetical protein 93837..94253 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901192.1 CDS STU288_00415 NC_021151.1 94477 94767 R UPF0379 protein yjfY Flags: Precursor complement(94477..94767) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901193.1 CDS STU288_00420 NC_021151.1 95665 97554 D COG3119 Arylsulfatase A and related enzymes; Choline-sulfatase 95665..97554 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901194.1 CDS STU288_00425 NC_021151.1 97961 98491 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefF 97961..98491 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901195.1 CDS STU288_00430 NC_021151.1 98484 100346 D COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefC 98484..100346 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901196.1 CDS folA NC_021151.1 100545 101024 D COG0262 Dihydrofolate reductase; dihydrofolate reductase 100545..101024 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901197.1 CDS apaH NC_021151.1 101130 101978 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; diadenosine tetraphosphatase complement(101130..101978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901198.1 CDS apaG NC_021151.1 101989 102366 R COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; CO2+/MG2+ efflux protein ApaG complement(101989..102366) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901199.1 CDS ksgA NC_021151.1 102369 103190 R COG0030 Dimethyladenosine transferase (rRNA methylation); 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein complement(102369..103190) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901200.1 CDS pdxA NC_021151.1 103187 104176 R COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase complement(103187..104176) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901201.1 CDS STU288_00460 NC_021151.1 104176 105462 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase SurA complement(104176..105462) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901202.1 CDS STU288_00465 NC_021151.1 105516 107876 R COG1452 Organic solvent tolerance protein OstA; LPS assembly outer membrane complex protein LptD complement(105516..107876) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901203.1 CDS djlA NC_021151.1 108130 108942 D COG1076 DnaJ-domain-containing proteins 1; Dna-J like membrane chaperone protein 108130..108942 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901204.1 CDS STU288_00475 NC_021151.1 109037 109696 R COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA/tRNA pseudouridine synthase A complement(109037..109696) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901205.1 CDS STU288_00480 NC_021151.1 109708 112614 R COG0553 Superfamily II DNA/RNA helicases, SNF2 family; ATP-dependent helicase HepA complement(109708..112614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901206.1 CDS STU288_00485 NC_021151.1 112788 115139 R COG0417 DNA polymerase elongation subunit (family B); DNA polymerase II complement(112788..115139) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901207.1 CDS STU288_00490 NC_021151.1 115183 115803 R COG1434 Uncharacterized conserved protein; YdcF-like/sfiX involved in mureinsynthesis complement(115183..115803) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901208.1 CDS STU288_00495 NC_021151.1 116522 116941 D hypothetical protein 116522..116941 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901209.1 CDS araD NC_021151.1 116947 117642 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase complement(116947..117642) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901210.1 CDS STU288_00505 NC_021151.1 117783 119285 R COG2160 L-arabinose isomerase; L-arabinose isomerase complement(117783..119285) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901211.1 CDS STU288_00510 NC_021151.1 119296 121005 R COG1069 Ribulose kinase; ribulokinase complement(119296..121005) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901212.1 CDS STU288_00515 NC_021151.1 121346 122191 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator AraC 121346..122191 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901213.1 CDS STU288_00520 NC_021151.1 122310 123077 D COG0586 Uncharacterized membrane-associated protein; inner membrane protein 122310..123077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901214.1 CDS thiQ NC_021151.1 123116 123823 R COG3840 ABC-type thiamine transport system, ATPase component; thiamine transporter ATP-binding subunit complement(123116..123823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901215.1 CDS thiP NC_021151.1 123807 125417 R COG1178 ABC-type Fe3+ transport system, permease component; thiamine transporter membrane protein complement(123807..125417) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901216.1 CDS tbpA NC_021151.1 125393 126376 R COG4143 ABC-type thiamine transport system, periplasmic component; thiamine transporter substrate binding subunit complement(125393..126376) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901217.1 CDS STU288_00540 NC_021151.1 126554 128212 R COG4533 ABC-type uncharacterized transport system, periplasmic component; transcriptional regulator SgrR complement(126554..128212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901218.1 CDS STU288_00545 NC_021151.1 128305 128427 D leuD 128305..128427 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901219.1 CDS leuD NC_021151.1 128763 129368 R COG0066 3-isopropylmalate dehydratase small subunit; isopropylmalate isomerase small subunit complement(128763..129368) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901220.1 CDS STU288_00555 NC_021151.1 129379 130779 R COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit complement(129379..130779) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901221.1 CDS STU288_00560 NC_021151.1 130782 131873 R COG0473 Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(130782..131873) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901222.1 CDS STU288_00565 NC_021151.1 131873 133444 R COG0119 Isopropylmalate/homocitrate/citramalate synthases; 2-isopropylmalate synthase complement(131873..133444) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901223.1 CDS STU288_00570 NC_021151.1 133532 133618 R leu operon leader peptide complement(133532..133618) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901224.1 CDS leuO NC_021151.1 134275 135219 D COG0583 Transcriptional regulator; leucine transcriptional activator 134275..135219 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901225.1 CDS STU288_00580 NC_021151.1 135604 137265 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 3 catalytic subunit 135604..137265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901226.1 CDS ilvH NC_021151.1 137268 137759 D COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 3 regulatory subunit 137268..137759 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901227.1 CDS STU288_00590 NC_021151.1 138043 139047 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator FruR 138043..139047 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901228.1 CDS STU288_00595 NC_021151.1 139653 140111 D COG2001 Uncharacterized protein conserved in bacteria; cell division protein MraZ 139653..140111 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901229.1 CDS STU288_00600 NC_021151.1 140113 141054 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; 16S rRNA m(4)C1402 methyltransferase 140113..141054 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901230.1 CDS STU288_00605 NC_021151.1 141051 141416 D COG3116 Cell division protein; cell division protein FtsL 141051..141416 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901231.1 CDS STU288_00610 NC_021151.1 141432 143198 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan synthase FtsI 141432..143198 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901232.1 CDS murE NC_021151.1 143185 144672 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143185..144672 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901233.1 CDS murF NC_021151.1 144669 146027 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 144669..146027 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901234.1 CDS mraY NC_021151.1 146021 147103 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 146021..147103 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901235.1 CDS murD NC_021151.1 147106 148422 D COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 147106..148422 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901236.1 CDS STU288_00635 NC_021151.1 148422 149666 D COG0772 Bacterial cell division membrane protein; cell division protein FtsW 148422..149666 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901237.1 CDS murG NC_021151.1 149663 150730 D COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 149663..150730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901238.1 CDS murC NC_021151.1 150849 152324 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 150849..152324 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901239.1 CDS ddl NC_021151.1 152317 153237 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase 152317..153237 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901240.1 CDS STU288_00655 NC_021151.1 153239 154069 D COG1589 Cell division septal protein; cell division protein FtsQ 153239..154069 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901241.1 CDS ftsA NC_021151.1 154066 155328 D COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 154066..155328 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901242.1 CDS STU288_00665 NC_021151.1 155389 156540 D COG0206 Cell division GTPase; cell division protein FtsZ 155389..156540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901243.1 CDS lpxC NC_021151.1 156641 157558 D COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 156641..157558 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901244.1 CDS STU288_00675 NC_021151.1 157836 158333 D SecA regulator SecM 157836..158333 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901245.1 CDS STU288_00680 NC_021151.1 158395 161100 D COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 158395..161100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901246.1 CDS STU288_00685 NC_021151.1 161252 161647 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphate pyrophosphohydrolase 161252..161647 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901247.1 CDS STU288_00690 NC_021151.1 161681 161815 R COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo/keto reductase complement(161681..161815) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901248.1 CDS STU288_00695 NC_021151.1 161868 161972 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 161868..161972 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901249.1 CDS STU288_00700 NC_021151.1 161969 162160 R COG3024 Uncharacterized protein conserved in bacteria; DNA gyrase inhibitor complement(161969..162160) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901250.1 CDS STU288_00705 NC_021151.1 162170 162913 R COG4582 Uncharacterized protein conserved in bacteria; hypothetical protein complement(162170..162913) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901251.1 CDS coaE NC_021151.1 162913 163533 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(162913..163533) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901252.1 CDS STU288_00715 NC_021151.1 163759 164802 D COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 163759..164802 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901253.1 CDS STU288_00720 NC_021151.1 164833 166035 R COG1459 Type II secretory pathway, component PulF; type IV pilin biogenesis protein complement(164833..166035) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901254.1 CDS STU288_00725 NC_021151.1 166025 167410 R COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; hypothetical protein complement(166025..167410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901255.1 CDS STU288_00730 NC_021151.1 167420 167857 R COG4969 Tfp pilus assembly protein, major pilin PilA; major pilin subunit complement(167420..167857) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901256.1 CDS STU288_00735 NC_021151.1 168079 168972 R COG0157 Nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase complement(168079..168972) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901257.1 CDS STU288_00740 NC_021151.1 169060 169623 D COG3023 Negative regulator of beta-lactamase expression; N-acetyl-anhydromuranmyl-L-alanine amidase 169060..169623 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901258.1 CDS STU288_00745 NC_021151.1 169620 170474 D COG3725 Membrane protein required for beta-lactamase induction; regulatory protein AmpE 169620..170474 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901259.1 CDS STU288_00750 NC_021151.1 170566 171516 R COG3940 Predicted beta-xylosidase; glycosyl hydrolase complement(170566..171516) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901260.1 CDS STU288_00755 NC_021151.1 171516 172922 R COG2211 Na+/melibiose symporter and related transporters; Na+/galactoside symporter complement(171516..172922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901261.1 CDS STU288_00760 NC_021151.1 173086 174456 R COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transporter complement(173086..174456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901262.1 CDS pdhR NC_021151.1 175022 175786 D COG2186 Transcriptional regulators; transcriptional regulator PdhR 175022..175786 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901263.1 CDS aceE NC_021151.1 175946 178609 D COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; pyruvate dehydrogenase subunit E1 175946..178609 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901264.1 CDS aceF NC_021151.1 178624 180513 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; pyruvate dehydrogenase dihydrolipoyltransacetylase 178624..180513 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901265.1 CDS STU288_00780 NC_021151.1 180713 182137 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; dihydrolipoamide dehydrogenase 180713..182137 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901266.1 CDS STU288_00785 NC_021151.1 182426 182710 D putative secreted protein 182426..182710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901267.1 CDS STU288_00790 NC_021151.1 182748 183539 R hypothetical protein complement(182748..183539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901268.1 CDS STU288_00795 NC_021151.1 183552 185174 R hypothetical protein complement(183552..185174) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901269.1 CDS STU288_00800 NC_021151.1 185563 188160 D COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185563..188160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901270.1 CDS STU288_00805 NC_021151.1 188221 189063 R COG3183 Predicted restriction endonuclease; restriction endonuclease complement(188221..189063) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901271.1 CDS STU288_00810 NC_021151.1 189309 189671 D COG3112 Uncharacterized protein conserved in bacteria; hypothetical protein 189309..189671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901272.1 CDS STU288_00815 NC_021151.1 189906 190859 D 2-keto-3-deoxygluconate permease 189906..190859 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901273.1 CDS STU288_00820 NC_021151.1 190856 192127 D COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 190856..192127 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901274.1 CDS pdxA NC_021151.1 192117 193100 D COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 2 192117..193100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901275.1 CDS STU288_00830 NC_021151.1 193110 193877 D COG1349 Transcriptional regulators of sugar metabolism; putative HTH-type transcriptional regulator ygbI 193110..193877 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901276.1 CDS STU288_00835 NC_021151.1 193907 194701 R COG1586 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase complement(193907..194701) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901277.1 CDS STU288_00840 NC_021151.1 194722 195582 R COG0421 Spermidine synthase; spermidine synthase complement(194722..195582) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901278.1 CDS STU288_00845 NC_021151.1 195689 196036 R hypothetical protein complement(195689..196036) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901279.1 CDS STU288_00850 NC_021151.1 196238 197848 D COG2132 Putative multicopper oxidases; multicopper oxidase 196238..197848 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901280.1 CDS STU288_00855 NC_021151.1 197926 200316 R COG4993 Glucose dehydrogenase; glucose dehydrogenase complement(197926..200316) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901281.1 CDS STU288_00860 NC_021151.1 200522 201058 D COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 200522..201058 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901282.1 CDS STU288_00865 NC_021151.1 201116 201778 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(201116..201778) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901283.1 CDS STU288_00870 NC_021151.1 201887 202813 D COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 201887..202813 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901284.1 CDS STU288_00875 NC_021151.1 202810 203580 D COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease 202810..203580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901285.1 CDS STU288_00880 NC_021151.1 203697 204776 R fimbrial protein StiH complement(203697..204776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901286.1 CDS STU288_00885 NC_021151.1 204785 207331 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StiC complement(204785..207331) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901287.1 CDS STU288_00890 NC_021151.1 207358 208041 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StiB complement(207358..208041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901288.1 CDS STU288_00895 NC_021151.1 208089 208628 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein StiA complement(208089..208628) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901289.1 CDS STU288_00900 NC_021151.1 208999 209439 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system transporter subunit IIA 208999..209439 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901290.1 CDS STU288_00905 NC_021151.1 209507 210730 D COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 209507..210730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901291.1 CDS STU288_00910 NC_021151.1 210737 211117 R COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase complement(210737..211117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901292.1 CDS panC NC_021151.1 211212 212066 R COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase complement(211212..212066) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901293.1 CDS panB NC_021151.1 212192 212983 R COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(212192..212983) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901294.1 CDS STU288_00925 NC_021151.1 213104 213583 R COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase complement(213104..213583) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901295.1 CDS pcnB NC_021151.1 213580 214998 R COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase I complement(213580..214998) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901296.1 CDS STU288_00935 NC_021151.1 215139 216035 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA(Asp) ligase complement(215139..216035) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901297.1 CDS dksA NC_021151.1 216104 216559 R COG1734 DnaK suppressor protein; RNA polymerase-binding transcription factor complement(216104..216559) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901298.1 CDS STU288_00945 NC_021151.1 216736 217440 R COG1489 DNA-binding protein, stimulates sugar fermentation; DNA-binding transcriptional regulator complement(216736..217440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901299.1 CDS STU288_00950 NC_021151.1 217457 217987 R COG1514 2'-5' RNA ligase; 2'-5' RNA ligase complement(217457..217987) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901300.1 CDS STU288_00955 NC_021151.1 218060 220489 D COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpB 218060..220489 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901301.1 CDS mrcB NC_021151.1 220630 223152 D COG0744 Membrane carboxypeptidase (penicillin-binding protein); bifunctional glycosyl transferase/transpeptidase 220630..223152 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901302.1 CDS STU288_00965 NC_021151.1 223445 225634 D COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrichrome outer membrane transporter 223445..225634 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901303.1 CDS STU288_00970 NC_021151.1 225683 226480 D COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-hydroxamate transporter ATP-binding subunit 225683..226480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901304.1 CDS STU288_00975 NC_021151.1 226480 227370 D COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron-hydroxamate transporter substrate-binding subunit 226480..227370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901305.1 CDS STU288_00980 NC_021151.1 227367 229424 D COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-hydroxamate transporter permease subunit 227367..229424 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901306.1 CDS STU288_00985 NC_021151.1 230364 230924 D COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit StfA 230364..230924 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901307.1 CDS STU288_00990 NC_021151.1 231010 233667 D COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StfC 231010..233667 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901308.1 CDS STU288_00995 NC_021151.1 233685 234437 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StfD 233685..234437 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901309.1 CDS STU288_01000 NC_021151.1 234456 234968 D minor fimbrial subunit StfE 234456..234968 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901310.1 CDS STU288_01005 NC_021151.1 234965 235441 D minor fimbrial subunit StfF 234965..235441 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901311.1 CDS STU288_01010 NC_021151.1 235441 235971 D minor fimbrial subunit StfG 235441..235971 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901312.1 CDS STU288_01015 NC_021151.1 235971 236810 D hypothetical protein 235971..236810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901313.1 CDS STU288_01020 NC_021151.1 236918 238198 R COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase complement(236918..238198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901314.1 CDS STU288_01025 NC_021151.1 238368 239789 D COG0038 Chloride channel protein EriC; chloride channel protein 238368..239789 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901315.1 CDS STU288_01030 NC_021151.1 239871 240215 D COG0316 Uncharacterized conserved protein; iron-sulfur cluster insertion protein ErpA 239871..240215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901316.1 CDS STU288_01035 NC_021151.1 240316 240939 R COG2860 Predicted membrane protein; hypothetical protein complement(240316..240939) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901317.1 CDS STU288_01040 NC_021151.1 240976 241776 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; vitamin B12-transporter protein BtuF complement(240976..241776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901318.1 CDS STU288_01045 NC_021151.1 241769 242467 R COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(241769..242467) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901319.1 CDS dgt NC_021151.1 242552 244069 D COG0232 dGTP triphosphohydrolase; deoxyguanosinetriphosphate triphosphohydrolase 242552..244069 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901320.1 CDS STU288_01055 NC_021151.1 244199 245626 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 244199..245626 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901321.1 CDS STU288_01060 NC_021151.1 245779 246936 D COG3835 Sugar diacid utilization regulator; carbohydrate diacid transcriptional activator CdaR 245779..246936 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901322.1 CDS STU288_01065 NC_021151.1 247025 247411 R hypothetical protein complement(247025..247411) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901323.1 CDS STU288_01070 NC_021151.1 247658 248959 D COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein 247658..248959 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901324.1 CDS dapD NC_021151.1 248996 249820 R COG2171 Tetrahydrodipicolinate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(248996..249820) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901325.1 CDS STU288_01080 NC_021151.1 249850 252522 R COG2844 UTP:GlnB (protein PII) uridylyltransferase; PII uridylyl-transferase complement(249850..252522) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901326.1 CDS STU288_01085 NC_021151.1 252759 253553 R COG0024 Methionine aminopeptidase; methionine aminopeptidase complement(252759..253553) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901327.1 CDS rpsB NC_021151.1 254004 254729 D COG0052 Ribosomal protein S2; 30S ribosomal protein S2 254004..254729 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901328.1 CDS tsf NC_021151.1 254987 255838 D COG0264 Translation elongation factor Ts; elongation factor Ts 254987..255838 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901329.1 CDS pyrH NC_021151.1 255983 256708 D COG0528 Uridylate kinase; uridylate kinase 255983..256708 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901330.1 CDS frr NC_021151.1 256855 257412 D COG0233 Ribosome recycling factor; ribosome recycling factor 256855..257412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901331.1 CDS STU288_01110 NC_021151.1 257553 258749 D COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 257553..258749 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901332.1 CDS STU288_01115 NC_021151.1 259062 259820 D COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 259062..259820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901333.1 CDS cdsA NC_021151.1 259833 260690 D COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthase 259833..260690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901334.1 CDS STU288_01125 NC_021151.1 260702 262054 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metallopeptidase RseP 260702..262054 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901335.1 CDS STU288_01130 NC_021151.1 262086 264500 D COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly factor YaeT 262086..264500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901336.1 CDS STU288_01135 NC_021151.1 264623 265108 D COG2825 Outer membrane protein; periplasmic chaperone 264623..265108 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901337.1 CDS lpxD NC_021151.1 265112 266137 D COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 265112..266137 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901338.1 CDS fabZ NC_021151.1 266243 266698 D COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 266243..266698 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901339.1 CDS STU288_01150 NC_021151.1 266702 267490 D COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 266702..267490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901340.1 CDS lpxB NC_021151.1 267490 268638 D COG0763 Lipid A disaccharide synthetase; lipid-A-disaccharide synthase 267490..268638 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901341.1 CDS rnhB NC_021151.1 268635 269231 D COG0164 Ribonuclease HII; ribonuclease HII 268635..269231 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901342.1 CDS dnaE NC_021151.1 269255 272737 D COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 269255..272737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901343.1 CDS STU288_01170 NC_021151.1 272750 273709 D COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 272750..273709 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901344.1 CDS STU288_01175 NC_021151.1 273890 275653 D COG3979 Uncharacterized protein contain chitin-binding domain type 3; Basic 30 kDa endochitinase Flags: Precursor 273890..275653 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901345.1 CDS STU288_01180 NC_021151.1 275729 277870 D COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase LdcC 275729..277870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901346.1 CDS STU288_01185 NC_021151.1 277926 278315 D COG0346 Lactoylglutathione lyase and related lyases; lyase 277926..278315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901347.1 CDS tilS NC_021151.1 278378 279670 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine ligase 278378..279670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901348.1 CDS STU288_01195 NC_021151.1 279754 280014 R COG4568 Transcriptional antiterminator; Rho-binding antiterminator complement(279754..280014) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901349.1 CDS STU288_01200 NC_021151.1 280001 280201 R hypothetical protein complement(280001..280201) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901350.1 CDS STU288_01205 NC_021151.1 280399 280944 D COG4681 Uncharacterized protein conserved in bacteria; hypothetical protein 280399..280944 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901351.1 CDS STU288_01210 NC_021151.1 280941 281363 D COG1186 Protein chain release factor B; hypothetical protein 280941..281363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901352.1 CDS STU288_01225 NC_021151.1 282174 283892 R COG0442 Prolyl-tRNA synthetase; prolyl-tRNA ligase complement(282174..283892) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901353.1 CDS STU288_01230 NC_021151.1 284003 284710 R COG1720 Uncharacterized conserved protein; putative regulatory protein complement(284003..284710) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901354.1 CDS rcsF NC_021151.1 284707 285111 R outer membrane lipoprotein complement(284707..285111) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901355.1 CDS metQ NC_021151.1 285230 286045 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; DL-methionine transporter substrate-binding subunit complement(285230..286045) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901356.1 CDS STU288_01245 NC_021151.1 286084 286737 R COG2011 ABC-type metal ion transport system, permease component; DL-methionine transporter permease subunit complement(286084..286737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901357.1 CDS metN NC_021151.1 286730 287761 R COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit complement(286730..287761) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901358.1 CDS STU288_01255 NC_021151.1 287951 288517 D COG0241 Histidinol phosphatase and related phosphatases; D,D-heptose 1,7-bisphosphate phosphatase 287951..288517 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901359.1 CDS STU288_01260 NC_021151.1 294552 295007 D hypothetical protein 294552..295007 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901360.1 CDS STU288_01265 NC_021151.1 295111 296412 D COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate transporter 295111..296412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901361.1 CDS STU288_01270 NC_021151.1 296409 296732 R COG5544 Predicted periplasmic lipoprotein; lipoprotein complement(296409..296732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901362.1 CDS pssA NC_021151.1 296777 298132 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; phosphatidylserine synthase complement(296777..298132) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901363.1 CDS STU288_01280 NC_021151.1 298247 300907 R COG1042 Acyl-CoA synthetase (NDP forming); protein lysine acetyltransferase complement(298247..300907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901364.1 CDS STU288_01285 NC_021151.1 300961 301641 R COG3148 Uncharacterized conserved protein; DTW domain-containing protein complement(300961..301641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901365.1 CDS STU288_01290 NC_021151.1 301714 302133 R COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2 complement(301714..302133) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901366.1 CDS STU288_01295 NC_021151.1 302337 303374 D COG0566 rRNA methylases; methyltransferase 302337..303374 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901367.1 CDS STU288_01300 NC_021151.1 303490 304179 R COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase complement(303490..304179) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901368.1 CDS STU288_01305 NC_021151.1 304498 304881 D COG3445 Acid-induced glycyl radical enzyme; autonomous glycyl radical cofactor GrcA 304498..304881 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901369.1 CDS STU288_01310 NC_021151.1 304943 305530 R COG1280 Putative threonine efflux protein; cysteine/O-acetylserine exporter complement(304943..305530) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901370.1 CDS STU288_01315 NC_021151.1 305633 306532 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 305633..306532 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901371.1 CDS STU288_01320 NC_021151.1 306550 307884 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase SrmB complement(306550..307884) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901372.1 CDS STU288_01325 NC_021151.1 308015 308752 D COG4123 Predicted O-methyltransferase; transferase 308015..308752 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901373.1 CDS STU288_01330 NC_021151.1 308737 310359 R COG0029 Aspartate oxidase; L-aspartate oxidase complement(308737..310359) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901374.1 CDS STU288_01335 NC_021151.1 310784 311359 D COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor RpoE 310784..311359 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901375.1 CDS STU288_01340 NC_021151.1 311391 312041 D COG3073 Negative regulator of sigma E activity; anti-RNA polymerase sigma factor SigE 311391..312041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901376.1 CDS rseB NC_021151.1 312041 312997 D COG3026 Negative regulator of sigma E activity; anti-sigma E factor 312041..312997 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901377.1 CDS STU288_01350 NC_021151.1 312994 313473 D COG3086 Positive regulator of sigma E activity; SoxR reducing system protein RseC 312994..313473 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901378.1 CDS STU288_01355 NC_021151.1 313971 315200 D COG0582 Integrase; bacteriophage integrase 313971..315200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901379.1 CDS STU288_01360 NC_021151.1 315178 315462 R excisionase-like protein complement(315178..315462) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901380.1 CDS STU288_01365 NC_021151.1 315503 315742 R putative cytoplasmic protein complement(315503..315742) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901381.1 CDS STU288_01380 NC_021151.1 316906 319791 R gifsy-1 prophage RecE complement(316906..319791) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901382.1 CDS STU288_01385 NC_021151.1 319918 320217 R Gifsy-2 prophage protein complement(319918..320217) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901383.1 CDS STU288_01390 NC_021151.1 320701 321117 R COG1396 Predicted transcriptional regulators; regulatory protein complement(320701..321117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901384.1 CDS STU288_01395 NC_021151.1 321231 321470 D hypothetical protein 321231..321470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901385.1 CDS STU288_01400 NC_021151.1 321661 321810 D Gifsy-1 prophage cI protein 321661..321810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901386.1 CDS STU288_01405 NC_021151.1 321895 322878 D gifsy-1 prophage PrpO 321895..322878 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901387.1 CDS STU288_01410 NC_021151.1 322881 323630 D COG1484 DNA replication protein; replication protein 322881..323630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901388.1 CDS STU288_01415 NC_021151.1 323641 323988 D putative DNA-binding protein 323641..323988 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901389.1 CDS STU288_01420 NC_021151.1 323985 324296 D conserved hypothetical bacteriophage protein 323985..324296 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901390.1 CDS STU288_01425 NC_021151.1 324395 324664 D hypothetical protein 324395..324664 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901391.1 CDS STU288_01430 NC_021151.1 324956 325189 D COG1344 Flagellin and related hook-associated proteins; DNA-damage-inducible protein I 324956..325189 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901392.1 CDS STU288_01435 NC_021151.1 325605 326207 D Gifsy-2 prophage protein 325605..326207 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901393.1 CDS STU288_01440 NC_021151.1 326207 326413 D hypothetical protein 326207..326413 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901394.1 CDS STU288_01445 NC_021151.1 326416 327027 D Protein NinG 326416..327027 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901395.1 CDS STU288_01450 NC_021151.1 327160 327957 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; antitermination protein Q 327160..327957 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901396.1 CDS STU288_01455 NC_021151.1 327993 328340 D Gifsy-2 prophage protein 327993..328340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901397.1 CDS STU288_01460 NC_021151.1 328775 329224 R putative lipoprotein complement(328775..329224) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901398.1 CDS STU288_01465 NC_021151.1 329585 330271 R hypothetical protein complement(329585..330271) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901399.1 CDS STU288_01470 NC_021151.1 330541 330876 D putative bacteriophage holin 330541..330876 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901400.1 CDS STU288_01475 NC_021151.1 330863 331312 D COG3772 Phage-related lysozyme (muraminidase); bacteriophage lysozyme 330863..331312 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901401.1 CDS STU288_01480 NC_021151.1 331330 331809 D bacteriophage lysis protein 331330..331809 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901402.1 CDS STU288_01485 NC_021151.1 332016 332549 D hypothetical protein 332016..332549 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901403.1 CDS STU288_01490 NC_021151.1 332641 334644 D COG5525 Bacteriophage tail assembly protein; phage terminase large subunit 332641..334644 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901404.1 CDS STU288_01495 NC_021151.1 334641 334847 D hypothetical protein 334641..334847 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901405.1 CDS STU288_01500 NC_021151.1 334844 336391 D COG5511 Bacteriophage capsid protein; phage portal protein lambda family 334844..336391 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901406.1 CDS STU288_01505 NC_021151.1 336342 338396 D COG0740 Protease subunit of ATP-dependent Clp proteases; Clp protease-like protein 336342..338396 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901407.1 CDS STU288_01510 NC_021151.1 338487 338810 D COG5471 Uncharacterized conserved protein; recombinase A 338487..338810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901408.1 CDS STU288_01515 NC_021151.1 338803 339102 D hypothetical protein 338803..339102 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901409.1 CDS STU288_01520 NC_021151.1 339083 339649 D prophage minor tail protein Z 339083..339649 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901410.1 CDS STU288_01525 NC_021151.1 339646 340047 D phage minor tail protein U 339646..340047 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901411.1 CDS STU288_01530 NC_021151.1 340059 340808 D COG5492 Bacterial surface proteins containing Ig-like domains; Major tail protein V 340059..340808 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901412.1 CDS STU288_01535 NC_021151.1 340854 341252 D Minor tail protein G 340854..341252 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901413.1 CDS STU288_01540 NC_021151.1 341315 341578 D Minor tail protein T 341315..341578 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901414.1 CDS STU288_01545 NC_021151.1 341559 344645 D COG5281 Phage-related minor tail protein; gifsy-1 prophage VmtH 341559..344645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901415.1 CDS STU288_01550 NC_021151.1 344645 344974 D COG4718 Phage-related protein; phage minor tail protein 344645..344974 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901416.1 CDS STU288_01555 NC_021151.1 345073 345570 D COG1629 Outer membrane receptor proteins, mostly Fe transport; Outer membrane protein X Flags: Precursor 345073..345570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901417.1 CDS STU288_01560 NC_021151.1 345687 346220 R COG2032 Cu/Zn superoxide dismutase; Cu/Zn superoxide dismutase complement(345687..346220) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901418.1 CDS STU288_01565 NC_021151.1 346310 347005 D COG4672 Phage-related protein; phage minor tail protein L 346310..347005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901419.1 CDS STU288_01570 NC_021151.1 347015 347752 D COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; bacteriophage minor tail protein 347015..347752 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901420.1 CDS STU288_01575 NC_021151.1 347812 348354 D COG4723 Phage-related protein, tail component; tail assembly protein 347812..348354 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901421.1 CDS STU288_01580 NC_021151.1 348426 350873 D COG4733 Phage-related protein, tail component; host specificity protein J 348426..350873 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901422.1 CDS STU288_01585 NC_021151.1 350900 351775 D COG4733 Phage-related protein, tail component; hypothetical protein 350900..351775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901423.1 CDS STU288_01590 NC_021151.1 351814 352056 D hypothetical protein 351814..352056 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901424.1 CDS STU288_01595 NC_021151.1 352110 354548 D Tail Fiber Protein 352110..354548 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901425.1 CDS STU288_01600 NC_021151.1 354548 355129 D tail fiber assembly like-protein 354548..355129 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901426.1 CDS STU288_01605 NC_021151.1 355605 356573 D pathogenicity island 2 effector protein SseI 355605..356573 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901427.1 CDS STU288_01610 NC_021151.1 356841 357089 D COG3436 Transposase and inactivated derivatives; transposase 356841..357089 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901428.1 CDS STU288_01615 NC_021151.1 357221 357847 R COG2135 Uncharacterized conserved protein; hypothetical protein complement(357221..357847) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901429.1 CDS STU288_01620 NC_021151.1 358200 358886 R gifsy-2 prophage protein complement(358200..358886) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901430.1 CDS STU288_01625 NC_021151.1 359157 359348 R Gifsy-2 prophage MsgA complement(359157..359348) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901431.1 CDS pepN NC_021151.1 359775 362387 D COG0308 Aminopeptidase N; aminopeptidase N 359775..362387 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901432.1 CDS STU288_01635 NC_021151.1 362595 363605 D COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 362595..363605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901433.1 CDS STU288_01640 NC_021151.1 363771 364313 D hypothetical protein 363771..364313 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901434.1 CDS STU288_01645 NC_021151.1 364310 365419 R COG3217 Uncharacterized Fe-S protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 complement(364310..365419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901435.1 CDS rlmL NC_021151.1 365518 367626 D COG0116 Predicted N6-adenine-specific DNA methylase; 23S rRNA m(2)G2445 methyltransferase 365518..367626 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901436.1 CDS STU288_01655 NC_021151.1 367639 369546 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase component 367639..369546 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901437.1 CDS STU288_01660 NC_021151.1 369561 370814 D COG2995 Uncharacterized paraquat-inducible protein A; paraquat-inducible membrane protein A 369561..370814 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901438.1 CDS STU288_01665 NC_021151.1 370819 372459 D COG3008 Paraquat-inducible protein B; paraquat-inducible protein B 370819..372459 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901439.1 CDS STU288_01670 NC_021151.1 372456 373019 D COG3009 Uncharacterized protein conserved in bacteria; lipoprotein 372456..373019 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901440.1 CDS STU288_01675 NC_021151.1 373275 373442 D COG3130 Ribosome modulation factor; ribosome modulation factor 373275..373442 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901441.1 CDS STU288_01680 NC_021151.1 373542 374060 R COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase complement(373542..374060) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901442.1 CDS STU288_01685 NC_021151.1 374129 375889 R COG1067 Predicted ATP-dependent protease; ATP-dependent protease La complement(374129..375889) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901443.1 CDS STU288_01690 NC_021151.1 376075 376527 D COG3120 Uncharacterized protein conserved in bacteria; Ter macrodomain organizer matS-binding protein 376075..376527 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901444.1 CDS STU288_01695 NC_021151.1 376599 377651 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane protein A complement(376599..377651) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901445.1 CDS STU288_01700 NC_021151.1 378008 378517 R COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation; SOS cell division inhibitor complement(378008..378517) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901446.1 CDS STU288_01705 NC_021151.1 378734 379339 D COG3070 Regulator of competence-specific genes; Protein sxy 378734..379339 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901447.1 CDS STU288_01710 NC_021151.1 379326 381479 R COG1289 Predicted membrane protein; Putative efflux (PET) family inner membrane protein YccS complement(379326..381479) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901448.1 CDS STU288_01715 NC_021151.1 381498 381944 R COG3304 Predicted membrane protein; hypothetical protein complement(381498..381944) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901449.1 CDS helD NC_021151.1 382068 384122 D COG0210 Superfamily I DNA and RNA helicases; DNA helicase IV 382068..384122 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901450.1 CDS mgsA NC_021151.1 384158 384616 R COG1803 Methylglyoxal synthase; methylglyoxal synthase complement(384158..384616) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901451.1 CDS STU288_01730 NC_021151.1 384711 385373 R COG3110 Uncharacterized protein conserved in bacteria; hypothetical protein complement(384711..385373) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901452.1 CDS STU288_01735 NC_021151.1 385547 385960 D COG1832 Predicted CoA-binding protein; hypothetical protein 385547..385960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901453.1 CDS STU288_01740 NC_021151.1 386005 386322 R COG3785 Uncharacterized conserved protein; heat shock protein HspQ complement(386005..386322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901454.1 CDS STU288_01745 NC_021151.1 386380 387591 R COG1092 Predicted SAM-dependent methyltransferases; 23S rRNA m(5)C1962 methyltransferase complement(386380..387591) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901455.1 CDS STU288_01750 NC_021151.1 387806 388354 D COG1881 Phospholipid-binding protein; putative outer membrane protein 387806..388354 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901456.1 CDS STU288_01755 NC_021151.1 388380 389159 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator 388380..389159 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901457.1 CDS STU288_01760 NC_021151.1 389208 389489 D COG1254 Acylphosphatases; acylphosphatase 389208..389489 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901458.1 CDS STU288_01765 NC_021151.1 389486 389815 R COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit; sulfur transfer protein TusE complement(389486..389815) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901459.1 CDS STU288_01770 NC_021151.1 389902 390561 R COG0670 Integral membrane protein, interacts with FtsH; HflBKC-binding inner membrane protein complement(389902..390561) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901460.1 CDS STU288_01775 NC_021151.1 391182 391862 R pathogenicity island-encoded protein A complement(391182..391862) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901461.1 CDS STU288_01780 NC_021151.1 392084 392959 R COG1357 Uncharacterized low-complexity proteins; secreted effector protein PipB complement(392084..392959) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901462.1 CDS STU288_01785 NC_021151.1 393507 393848 R type III secretion chaperone protein SigE complement(393507..393848) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901463.1 CDS STU288_01790 NC_021151.1 393865 395550 R inositol phosphate phosphatase SopB complement(393865..395550) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901464.1 CDS STU288_01795 NC_021151.1 395882 396052 D hypothetical protein 395882..396052 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901465.1 CDS STU288_01800 NC_021151.1 396272 397741 R COG4690 Dipeptidase; pathogenicity island encoded protein: SPI3 complement(396272..397741) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901466.1 CDS STU288_01805 NC_021151.1 397914 399278 R COG0642 Signal transduction histidine kinase; copper resistance protein complement(397914..399278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901467.1 CDS STU288_01810 NC_021151.1 399271 399951 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein YedW complement(399271..399951) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901468.1 CDS STU288_01815 NC_021151.1 400087 400497 D COG2351 Transthyretin-like protein; hydroxyisourate hydrolase 400087..400497 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901469.1 CDS hpaC NC_021151.1 400834 401346 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; 4-hydroxyphenylacetate 3-monooxygenase reductase subunit complement(400834..401346) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901470.1 CDS STU288_01825 NC_021151.1 401364 402926 R COG2368 Aromatic ring hydroxylase; 4-hydroxyphenylacetate 3-monooxygenase complement(401364..402926) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901471.1 CDS STU288_01830 NC_021151.1 403144 403584 R COG1846 Transcriptional regulators; Homoprotocatechuate degradative operon repressor complement(403144..403584) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901472.1 CDS STU288_01835 NC_021151.1 403859 405148 D COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase 403859..405148 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901473.1 CDS STU288_01840 NC_021151.1 405145 406611 D COG1012 NAD-dependent aldehyde dehydrogenases; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 405145..406611 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901474.1 CDS STU288_01845 NC_021151.1 406613 407464 D COG3384 Uncharacterized conserved protein; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 406613..407464 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901475.1 CDS STU288_01850 NC_021151.1 407474 407854 D COG3232 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 407474..407854 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901476.1 CDS STU288_01855 NC_021151.1 407997 408800 D COG3971 2-keto-4-pentenoate hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 407997..408800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901477.1 CDS STU288_01860 NC_021151.1 408811 409602 D COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 408811..409602 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901478.1 CDS STU288_01865 NC_021151.1 409674 411050 D COG0477 Permeases of the major facilitator superfamily; 4-hydroxyphenylacetate catabolism 409674..411050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901479.1 CDS STU288_01870 NC_021151.1 411060 411956 D COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional activator rhaR L-rhamnose operon transcriptional activator rhaR 411060..411956 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901480.1 CDS STU288_01875 NC_021151.1 411970 412908 D COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; hypothetical protein 411970..412908 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901481.1 CDS STU288_01880 NC_021151.1 413316 413678 R anti-adapter protein IraM complement(413316..413678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901482.1 CDS STU288_01885 NC_021151.1 414126 414281 D hypothetical protein 414126..414281 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901483.1 CDS STU288_01890 NC_021151.1 414332 414637 R chaperone-modulator protein CbpM complement(414332..414637) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901484.1 CDS STU288_01895 NC_021151.1 414637 415557 R COG2214 DnaJ-class molecular chaperone; curved DNA-binding protein CbpA complement(414637..415557) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901485.1 CDS STU288_01900 NC_021151.1 415792 416154 D membrane protein suppressor for copper-sensitivity A 415792..416154 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901486.1 CDS STU288_01905 NC_021151.1 416203 418089 D COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis; membrane protein, suppressor for copper-sensitivity B precursor 416203..418089 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901487.1 CDS STU288_01910 NC_021151.1 418086 418709 D COG1651 Protein-disulfide isomerase; secreted protein, suppressor for copper-sensitivity C precursor 418086..418709 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901488.1 CDS STU288_01915 NC_021151.1 418699 419205 D COG0526 Thiol-disulfide isomerase and thioredoxins; TlpA-like family, suppressor for copper sensitivity D protein (ScsD) 418699..419205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901489.1 CDS STU288_01920 NC_021151.1 419338 420579 D glucose-1-phosphatase/inositol phosphatase 419338..420579 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901490.1 CDS STU288_01925 NC_021151.1 420613 420840 R hypothetical protein complement(420613..420840) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901491.1 CDS STU288_01930 NC_021151.1 420861 421457 R COG0655 Multimeric flavodoxin WrbA; NAD(P)H:quinone oxidoreductase complement(420861..421457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901492.1 CDS STU288_01935 NC_021151.1 422146 422784 D COG1309 Transcriptional regulator; HTH-type transcriptional regulator RutR 422146..422784 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901493.1 CDS STU288_01940 NC_021151.1 422781 423176 R COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein complement(422781..423176) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901494.1 CDS putA NC_021151.1 423235 427197 R COG0506 Proline dehydrogenase; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(423235..427197) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901495.1 CDS STU288_01950 NC_021151.1 427619 429127 D COG0591 Na+/proline symporter; proline:sodium symporter PutP 427619..429127 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901496.1 CDS STU288_01955 NC_021151.1 429745 430041 D hypothetical protein 429745..430041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901497.1 CDS STU288_01960 NC_021151.1 430020 430808 D COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; hypothetical protein 430020..430808 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901498.1 CDS STU288_01965 NC_021151.1 430914 431795 R COG1737 Transcriptional regulators; transcriptional regulator complement(430914..431795) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901499.1 CDS STU288_01970 NC_021151.1 432080 433576 R COG0591 Na+/proline symporter; putative sodium/glucose cotransporter complement(432080..433576) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901500.1 CDS STU288_01975 NC_021151.1 433913 434593 R COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase complement(433913..434593) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901501.1 CDS STU288_01980 NC_021151.1 435099 436259 D COG3055 Uncharacterized protein conserved in bacteria; N-acetylneuraminic acid mutarotase 435099..436259 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901502.1 CDS STU288_01985 NC_021151.1 436305 436997 D Porin ompL Flags: Precursor 436305..436997 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901503.1 CDS STU288_01990 NC_021151.1 437280 438560 D COG0477 Permeases of the major facilitator superfamily; sialic acid transporter 437280..438560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901504.1 CDS STU288_01995 NC_021151.1 438574 439677 D COG0673 Predicted dehydrogenases and related proteins; putative dehydrogenase 438574..439677 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901505.1 CDS STU288_02000 NC_021151.1 440175 440339 R hypothetical protein complement(440175..440339) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901506.1 CDS ghrA NC_021151.1 440338 441276 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; bifunctional glyoxylate/hydroxypyruvate reductase A 440338..441276 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901507.1 CDS STU288_02010 NC_021151.1 441360 442097 D COG1387 Histidinol phosphatase and related hydrolases of the PHP family; hydrolase 441360..442097 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901508.1 CDS STU288_02015 NC_021151.1 442121 442675 D COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein 442121..442675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901509.1 CDS STU288_02020 NC_021151.1 442776 443258 D inner membrane protein 442776..443258 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901510.1 CDS STU288_02025 NC_021151.1 443297 444130 R COG1462 Uncharacterized protein involved in formation of curli polymers; curli production assembly/transport protein CsgG complement(443297..444130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901511.1 CDS STU288_02030 NC_021151.1 444157 444573 R curli assembly protein CsgF complement(444157..444573) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901512.1 CDS STU288_02035 NC_021151.1 444600 444995 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; curli assembly protein CsgE complement(444600..444995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901513.1 CDS STU288_02040 NC_021151.1 445000 445650 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional regulator CsgD complement(445000..445650) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901514.1 CDS csgB NC_021151.1 446405 446860 D curlin minor subunit CsgB 446405..446860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901515.1 CDS csgA NC_021151.1 446902 447357 D COG1012 NAD-dependent aldehyde dehydrogenases; major curlin subunit 446902..447357 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901516.1 CDS csgC NC_021151.1 447320 447745 D curli assembly protein CsgC 447320..447745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901517.1 CDS STU288_02060 NC_021151.1 447876 448196 D hypothetical protein 447876..448196 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901518.1 CDS STU288_02065 NC_021151.1 448285 448824 D COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; RNase III inhibitor 448285..448824 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901519.1 CDS STU288_02070 NC_021151.1 448760 450247 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; putative phospholipase 448760..450247 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901520.1 CDS opgC NC_021151.1 450264 451418 R glucans biosynthesis protein complement(450264..451418) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901521.1 CDS mdoG NC_021151.1 451690 453225 D COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein G 451690..453225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901522.1 CDS STU288_02085 NC_021151.1 453218 455761 D COG2943 Membrane glycosyltransferase; glucosyltransferase MdoH 453218..455761 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901523.1 CDS STU288_02090 NC_021151.1 455835 456062 D COG5645 Predicted periplasmic lipoprotein; lipoprotein 455835..456062 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901524.1 CDS STU288_02095 NC_021151.1 456063 456437 R secY/secA suppressor protein complement(456063..456437) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901525.1 CDS STU288_02100 NC_021151.1 456519 457733 R COG0477 Permeases of the major facilitator superfamily; drug efflux system protein MdtG complement(456519..457733) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901526.1 CDS STU288_02105 NC_021151.1 457888 458808 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase complement(457888..458808) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901527.1 CDS STU288_02110 NC_021151.1 459028 460080 D COG1054 Predicted sulfurtransferase; rhodanese-related sulfurtransferase 459028..460080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901528.1 CDS STU288_02115 NC_021151.1 460132 460707 R COG2353 Uncharacterized conserved protein; hypothetical protein complement(460132..460707) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901529.1 CDS STU288_02120 NC_021151.1 460704 461276 R COG3038 Cytochrome B561; cytochrome b561 complement(460704..461276) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901530.1 CDS STU288_02125 NC_021151.1 461539 461652 R hypothetical protein complement(461539..461652) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901531.1 CDS solA NC_021151.1 461693 462811 R COG0665 Glycine/D-amino acid oxidases (deaminating); N-methyltryptophan oxidase complement(461693..462811) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901532.1 CDS bssS NC_021151.1 462924 463178 R biofilm formation regulatory protein BssS complement(462924..463178) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901533.1 CDS STU288_02140 NC_021151.1 463468 463713 R DNA damage-inducible protein I complement(463468..463713) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901534.1 CDS STU288_02145 NC_021151.1 463787 464833 R COG0418 Dihydroorotase; dihydroorotase complement(463787..464833) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901535.1 CDS STU288_02150 NC_021151.1 464938 465498 R lipoprotein complement(464938..465498) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901536.1 CDS STU288_02155 NC_021151.1 465623 466270 R COG2999 Glutaredoxin 2; glutaredoxin 2 complement(465623..466270) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901537.1 CDS STU288_02160 NC_021151.1 466334 467542 R COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein MdtH complement(466334..467542) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901538.1 CDS STU288_02165 NC_021151.1 467779 468363 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-S5-alanine N-acetyltransferase 467779..468363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901539.1 CDS STU288_02170 NC_021151.1 468399 469046 D COG3132 Uncharacterized protein conserved in bacteria; hypothetical protein 468399..469046 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901540.1 CDS STU288_02175 NC_021151.1 469048 469971 D COG0673 Predicted dehydrogenases and related proteins; putative virulence protein 469048..469971 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901541.1 CDS STU288_02180 NC_021151.1 470275 471810 D COG0728 Uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 470275..471810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901542.1 CDS STU288_02185 NC_021151.1 471892 472314 R flagella synthesis chaperone protein FlgN complement(471892..472314) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901543.1 CDS STU288_02190 NC_021151.1 472319 472612 R COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); anti-sigma28 factor FlgM complement(472319..472612) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901544.1 CDS flgA NC_021151.1 472704 473363 R COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA complement(472704..473363) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901545.1 CDS flgB NC_021151.1 473520 473936 D COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 473520..473936 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901546.1 CDS flgC NC_021151.1 473940 474344 D COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 473940..474344 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901547.1 CDS flgD NC_021151.1 474356 475054 D COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 474356..475054 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901548.1 CDS flgE NC_021151.1 475081 476292 D COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 475081..476292 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901549.1 CDS flgF NC_021151.1 476313 477068 D COG4787 Flagellar basal body rod protein; flagellar basal body rod protein FlgF 476313..477068 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901550.1 CDS flgG NC_021151.1 477082 477864 D COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 477082..477864 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901551.1 CDS flgH NC_021151.1 477919 478617 D COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 477919..478617 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901552.1 CDS flgI NC_021151.1 478629 479726 D COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein 478629..479726 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901553.1 CDS flgJ NC_021151.1 479726 480676 D COG3951 Rod binding protein; flagellar rod assembly protein/muramidase FlgJ 479726..480676 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901554.1 CDS flgK NC_021151.1 480741 482402 D COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 480741..482402 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901555.1 CDS flgL NC_021151.1 482417 483370 D COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 482417..483370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901556.1 CDS rne NC_021151.1 483627 486830 R COG1530 Ribonucleases G and E; ribonuclease E complement(483627..486830) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901557.1 CDS STU288_02260 NC_021151.1 487404 488363 D COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridylate synthase C 487404..488363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901558.1 CDS STU288_02265 NC_021151.1 488501 489262 D putative inner membrane lipoprotein 488501..489262 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901559.1 CDS STU288_02270 NC_021151.1 489468 489692 D hypothetical protein 489468..489692 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901560.1 CDS STU288_02275 NC_021151.1 489764 490348 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(489764..490348) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901561.1 CDS STU288_02280 NC_021151.1 490546 491067 D COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 490546..491067 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901562.1 CDS STU288_02285 NC_021151.1 491119 491292 D COG0333 Ribosomal protein L32; 50S ribosomal protein L32 491119..491292 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901563.1 CDS STU288_02290 NC_021151.1 491426 492505 D COG0416 Fatty acid/phospholipid biosynthesis enzyme; phosphate acyltransferase 491426..492505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901564.1 CDS STU288_02295 NC_021151.1 492585 493538 D COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 492585..493538 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901565.1 CDS STU288_02300 NC_021151.1 493554 494483 D COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 493554..494483 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901566.1 CDS fabG NC_021151.1 494496 495230 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase 494496..495230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901567.1 CDS STU288_02310 NC_021151.1 495386 495622 D COG0236 Acyl carrier protein; hypothetical protein 495386..495622 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901568.1 CDS STU288_02315 NC_021151.1 495708 496949 D COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 495708..496949 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901569.1 CDS STU288_02320 NC_021151.1 497073 497882 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 497073..497882 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901570.1 CDS STU288_02325 NC_021151.1 497885 498907 D COG1559 Predicted periplasmic solute-binding protein; aminodeoxychorismate lyase 497885..498907 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901571.1 CDS tmk NC_021151.1 498897 499538 D COG0125 Thymidylate kinase; thymidylate kinase 498897..499538 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901572.1 CDS STU288_02335 NC_021151.1 499535 500539 D COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 499535..500539 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901573.1 CDS STU288_02340 NC_021151.1 500550 501347 D COG0084 Mg-dependent DNase; DNAse 500550..501347 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901574.1 CDS STU288_02345 NC_021151.1 501642 503075 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS glucose-specific subunit IIBC 501642..503075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901575.1 CDS STU288_02350 NC_021151.1 503160 505334 R COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; ferric-rhodotorulic acid outer membrane transporter complement(503160..505334) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901576.1 CDS STU288_02355 NC_021151.1 505676 506035 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; purine nucleoside phosphoramidase 505676..506035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901577.1 CDS STU288_02360 NC_021151.1 506038 506412 D COG5633 Predicted periplasmic lipoprotein; lipoprotein 506038..506412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901578.1 CDS STU288_02365 NC_021151.1 506426 507064 D COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family); Lipoprotein YcfM 506426..507064 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901579.1 CDS thiK NC_021151.1 507045 507869 D COG0510 Predicted choline kinase involved in LPS biosynthesis; thiamine kinase 507045..507869 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901580.1 CDS STU288_02375 NC_021151.1 507880 508905 D COG1472 Beta-glucosidase-related glycosidases; beta-hexosaminidase 507880..508905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901581.1 CDS STU288_02380 NC_021151.1 508930 509472 D COG3150 Predicted esterase; hypothetical protein 508930..509472 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901582.1 CDS STU288_02385 NC_021151.1 509727 511031 D COG1252 NADH dehydrogenase, FAD-containing subunit; respiratory NADH dehydrogenase 2 509727..511031 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901583.1 CDS STU288_02390 NC_021151.1 511044 511130 R hypothetical protein complement(511044..511130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901584.1 CDS STU288_02395 NC_021151.1 511210 511749 D COG3134 Predicted outer membrane lipoprotein; hypothetical protein 511210..511749 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901585.1 CDS STU288_02400 NC_021151.1 511824 512459 R COG1309 Transcriptional regulator; putative transcriptional repressor complement(511824..512459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901586.1 CDS STU288_02405 NC_021151.1 512701 512958 D hypothetical protein 512701..512958 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901587.1 CDS STU288_02410 NC_021151.1 513055 514020 R COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase complement(513055..514020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901588.1 CDS STU288_02415 NC_021151.1 514168 517614 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(514168..517614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901589.1 CDS STU288_02420 NC_021151.1 517952 519151 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolC 517952..519151 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901590.1 CDS lolD NC_021151.1 519144 519845 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein transporter ATP-binding subunit 519144..519845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901591.1 CDS STU288_02430 NC_021151.1 519845 521089 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolE 519845..521089 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901592.1 CDS STU288_02435 NC_021151.1 521118 522029 D COG1940 Transcriptional regulator/sugar kinase; N-acetyl-D-glucosamine kinase 521118..522029 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901593.1 CDS STU288_02440 NC_021151.1 522048 522869 D COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 522048..522869 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901594.1 CDS potD NC_021151.1 522951 523997 R COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine ABC transporter periplasmic substrate-binding protein complement(522951..523997) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901595.1 CDS potC NC_021151.1 524022 524801 R COG1177 ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter membrane protein complement(524022..524801) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901596.1 CDS sifA NC_021151.1 525117 526127 R secreted effector protein SifA complement(525117..526127) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901597.1 CDS potB NC_021151.1 526456 527319 R COG1176 ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter membrane protein complement(526456..527319) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901598.1 CDS potA NC_021151.1 527303 528439 R COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine/spermidine ABC transporter ATPase protein complement(527303..528439) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901599.1 CDS STU288_02470 NC_021151.1 528690 529919 D COG2195 Di- and tripeptidases; peptidase T 528690..529919 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901600.1 CDS STU288_02475 NC_021151.1 529923 531257 D COG0457 FOG: TPR repeat; hypothetical protein 529923..531257 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901601.1 CDS STU288_02480 NC_021151.1 531297 532418 R COG2850 Uncharacterized conserved protein; hypothetical protein complement(531297..532418) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901602.1 CDS STU288_02485 NC_021151.1 532499 533962 R COG0642 Signal transduction histidine kinase; sensor protein PhoQ complement(532499..533962) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901603.1 CDS STU288_02490 NC_021151.1 533962 534633 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator PhoP complement(533962..534633) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901604.1 CDS STU288_02495 NC_021151.1 534760 536130 R COG0015 Adenylosuccinate lyase; adenylosuccinate lyase complement(534760..536130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901605.1 CDS STU288_02500 NC_021151.1 536134 536775 R COG2915 Uncharacterized protein involved in purine metabolism; lysogenization regulator complement(536134..536775) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901606.1 CDS mnmA NC_021151.1 536862 537968 R COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA complement(536862..537968) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901607.1 CDS STU288_02510 NC_021151.1 538022 538483 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; mutT family protein complement(538022..538483) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901608.1 CDS STU288_02515 NC_021151.1 538495 538824 R COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein; hypothetical protein complement(538495..538824) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901609.1 CDS STU288_02520 NC_021151.1 538821 539486 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase E complement(538821..539486) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901610.1 CDS STU288_02525 NC_021151.1 539658 540908 D COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 539658..540908 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901611.1 CDS STU288_02530 NC_021151.1 541356 542480 D bacteriophage protein 541356..542480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901612.1 CDS STU288_02535 NC_021151.1 542937 543140 R hypothetical protein complement(542937..543140) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901613.1 CDS STU288_02540 NC_021151.1 543462 544250 R putative envelope lipoprotein complement(543462..544250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901614.1 CDS STU288_02545 NC_021151.1 544739 544978 R virulence protein (MsgA) complement(544739..544978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901615.1 CDS STU288_02550 NC_021151.1 545169 545690 R putative envelope protein complement(545169..545690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901616.1 CDS STU288_02555 NC_021151.1 546105 546317 R COG1278 Cold shock proteins; cold shock-like protein CspF complement(546105..546317) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901617.1 CDS STU288_02560 NC_021151.1 547524 548081 D COG3637 Opacity protein and related surface antigens; Attachment invasion locus protein precursor 547524..548081 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901618.1 CDS STU288_02565 NC_021151.1 549318 549662 R lysozyme inhibitor complement(549318..549662) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901619.1 CDS STU288_02570 NC_021151.1 550040 550165 D putative lipoprotein 550040..550165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901620.1 CDS STU288_02575 NC_021151.1 550365 550637 D putative cytoplasmic protein 550365..550637 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901621.1 CDS STU288_02580 NC_021151.1 550786 551256 D COG0071 Molecular chaperone (small heat shock protein); heat shock protein 550786..551256 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901622.1 CDS STU288_02585 NC_021151.1 551595 552638 D COG4692 Predicted neuraminidase (sialidase); hypothetical protein 551595..552638 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901623.1 CDS STU288_02590 NC_021151.1 552721 553251 R COG3038 Cytochrome B561; putative inner membrane protein complement(552721..553251) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901624.1 CDS STU288_02595 NC_021151.1 553400 553714 R Protein trl tRNA-associated locus protein complement(553400..553714) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901625.1 CDS STU288_02600 NC_021151.1 554396 556030 D COG0747 ABC-type dipeptide transport system, periplasmic component; nickel ABC transporter substrate-binding protein 554396..556030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901626.1 CDS STU288_02605 NC_021151.1 556030 557004 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Dipeptide transport system permease protein dppB 556030..557004 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901627.1 CDS STU288_02610 NC_021151.1 556994 557806 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; putative inner membrane transport protein 556994..557806 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901628.1 CDS STU288_02615 NC_021151.1 557800 558597 D COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; ABC transporter ATP-binding protein 557800..558597 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901629.1 CDS STU288_02620 NC_021151.1 558591 559181 D COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC transporter ATP-binding protein 558591..559181 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901630.1 CDS STU288_02625 NC_021151.1 559263 560396 R COG0668 Small-conductance mechanosensitive channel; putative mscS family protein complement(559263..560396) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901631.1 CDS STU288_02630 NC_021151.1 560590 560916 D COG1145 Ferredoxin; ferredoxin 560590..560916 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901632.1 CDS STU288_02635 NC_021151.1 561110 561760 D COG3443 Predicted periplasmic or secreted protein; zinc/cadmium-binding protein 561110..561760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901633.1 CDS STU288_02640 NC_021151.1 561869 562657 D COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 561869..562657 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901634.1 CDS STU288_02645 NC_021151.1 562802 563395 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative response regulator 562802..563395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901635.1 CDS STU288_02650 NC_021151.1 563464 564312 D COG0789 Predicted transcriptional regulators; HTH-type transcriptional regulator mlrA MerR-like regulator A 563464..564312 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901636.1 CDS STU288_02655 NC_021151.1 564567 564815 R hypothetical protein complement(564567..564815) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901637.1 CDS STU288_02660 NC_021151.1 564894 565043 R hypothetical protein complement(564894..565043) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901638.1 CDS STU288_02665 NC_021151.1 565126 565671 D COG1605 Chorismate mutase; chorismate mutase 565126..565671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901639.1 CDS STU288_02670 NC_021151.1 565868 566506 D COG1280 Putative threonine efflux protein; leucine export protein LeuE 565868..566506 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901640.1 CDS STU288_02675 NC_021151.1 566679 567041 D COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; putative cytoplasmic protein 566679..567041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901641.1 CDS STU288_02680 NC_021151.1 567044 567226 D Protein yoaG 567044..567226 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901642.1 CDS STU288_02685 NC_021151.1 567456 568097 D putative nitric oxide reductase 567456..568097 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901643.1 CDS STU288_02690 NC_021151.1 568412 568660 D COG2261 Predicted membrane protein; hypothetical protein 568412..568660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901644.1 CDS STU288_02695 NC_021151.1 569093 569344 D COG3042 Putative hemolysin; hemolysin 569093..569344 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901645.1 CDS STU288_02700 NC_021151.1 569413 569724 D hypothetical protein 569413..569724 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901646.1 CDS STU288_02705 NC_021151.1 569710 570057 R COG3189 Uncharacterized conserved protein; hypothetical protein complement(569710..570057) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901647.1 CDS STU288_02710 NC_021151.1 570176 571360 R COG2807 Cyanate permease; hypothetical protein complement(570176..571360) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901648.1 CDS STU288_02715 NC_021151.1 571461 572255 D COG2207 AraC-type DNA-binding domain-containing proteins; putative HTH-type transcriptional regulator yeaM 571461..572255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901649.1 CDS STU288_02720 NC_021151.1 572235 572681 R COG2707 Predicted membrane protein; hypothetical protein complement(572235..572681) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901650.1 CDS STU288_02725 NC_021151.1 572887 572994 D hypothetical protein 572887..572994 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901651.1 CDS STU288_02730 NC_021151.1 572991 573518 R COG2606 Uncharacterized conserved protein; protein YeaK complement(572991..573518) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901652.1 CDS STU288_02735 NC_021151.1 573559 575052 R COG2199 FOG: GGDEF domain; hypothetical protein complement(573559..575052) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901653.1 CDS STU288_02740 NC_021151.1 575693 576979 R COG2718 Uncharacterized conserved protein; hypothetical protein complement(575693..576979) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901654.1 CDS STU288_02745 NC_021151.1 577102 579036 R COG2766 Putative Ser protein kinase; PrkA family serine protein kinase complement(577102..579036) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901655.1 CDS STU288_02750 NC_021151.1 579463 580209 D COG3713 Outer membrane protein V; MltA-interacting protein MipA 579463..580209 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901656.1 CDS STU288_02755 NC_021151.1 580499 581695 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase regulator 580499..581695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901657.1 CDS STU288_02760 NC_021151.1 581792 582649 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 581792..582649 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901658.1 CDS STU288_02765 NC_021151.1 582748 583632 R COG0676 Uncharacterized enzymes related to aldose 1-epimerase; aldose 1-epimerase complement(582748..583632) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901659.1 CDS STU288_02770 NC_021151.1 583632 583814 R hypothetical protein complement(583632..583814) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901660.1 CDS gapA NC_021151.1 583967 584962 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase A complement(583967..584962) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901661.1 CDS STU288_02780 NC_021151.1 585304 585717 D COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; methionine sulfoxide reductase B 585304..585717 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901662.1 CDS STU288_02785 NC_021151.1 585759 586037 D COG3139 Uncharacterized protein conserved in bacteria; hypothetical protein 585759..586037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901663.1 CDS STU288_02790 NC_021151.1 586389 586907 R COG1335 Amidases related to nicotinamidase; nicotinamidase/pyrazinamidase complement(586389..586907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901664.1 CDS ansA NC_021151.1 587071 588087 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; cytoplasmic asparaginase I complement(587071..588087) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901665.1 CDS STU288_02800 NC_021151.1 588183 590039 R COG0616 Periplasmic serine proteases (ClpP class); protease 4 complement(588183..590039) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901666.1 CDS STU288_02805 NC_021151.1 590213 590764 D COG0778 Nitroreductase; oxidoreductase 590213..590764 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901667.1 CDS STU288_02810 NC_021151.1 590882 591925 D COG0709 Selenophosphate synthase; selenophosphate synthetase 590882..591925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901668.1 CDS STU288_02815 NC_021151.1 591930 593879 D COG0550 Topoisomerase IA; DNA topoisomerase III 591930..593879 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901669.1 CDS STU288_02820 NC_021151.1 593909 595252 R COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase complement(593909..595252) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901670.1 CDS STU288_02825 NC_021151.1 595491 595766 D hypothetical protein 595491..595766 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901671.1 CDS STU288_02830 NC_021151.1 595726 596142 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase complement(595726..596142) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901672.1 CDS STU288_02835 NC_021151.1 596215 597021 R COG0708 Exonuclease III; exonuclease III complement(596215..597021) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901673.1 CDS STU288_02840 NC_021151.1 597467 598693 D COG4992 Ornithine/acetylornithine aminotransferase; bifunctional succinylornithine transaminase/acetylornithine transaminase 597467..598693 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901674.1 CDS STU288_02845 NC_021151.1 598684 599718 D COG3138 Arginine/ornithine N-succinyltransferase beta subunit; arginine succinyltransferase 598684..599718 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901675.1 CDS astD NC_021151.1 599715 601193 D COG1012 NAD-dependent aldehyde dehydrogenases; succinylglutamic semialdehyde dehydrogenase 599715..601193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901676.1 CDS STU288_02855 NC_021151.1 601190 602533 D COG3724 Succinylarginine dihydrolase; succinylarginine dihydrolase 601190..602533 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901677.1 CDS STU288_02860 NC_021151.1 602526 603494 D COG2988 Succinylglutamate desuccinylase; succinylglutamate desuccinylase 602526..603494 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901678.1 CDS STU288_02865 NC_021151.1 603830 604315 D COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic protein 603830..604315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901679.1 CDS STU288_02870 NC_021151.1 604390 605271 R COG0322 Nuclease subunit of the excinuclease complex; nucleotide excision repair endonuclease complement(604390..605271) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901680.1 CDS nadE NC_021151.1 605392 606219 R COG0171 NAD synthase; NAD synthetase complement(605392..606219) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901681.1 CDS STU288_02880 NC_021151.1 606438 606779 D DNA-binding transcriptional activator OsmE 606438..606779 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901682.1 CDS STU288_02885 NC_021151.1 607080 607400 D COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 607080..607400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901683.1 CDS STU288_02890 NC_021151.1 607483 608841 D COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 607483..608841 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901684.1 CDS STU288_02895 NC_021151.1 608892 609239 D COG1447 Phosphotransferase system cellobiose-specific component IIA; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 608892..609239 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901685.1 CDS STU288_02900 NC_021151.1 609250 610092 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator ChbR 609250..610092 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901686.1 CDS STU288_02905 NC_021151.1 610217 611572 D COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; diacetylchitobiose-6-phosphate hydrolase 610217..611572 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901687.1 CDS STU288_02910 NC_021151.1 611585 612343 D COG3394 Uncharacterized protein conserved in bacteria; hypothetical protein 611585..612343 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901688.1 CDS katE NC_021151.1 612387 614639 R COG0753 Catalase; hydroperoxidase II complement(612387..614639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901689.1 CDS STU288_02920 NC_021151.1 615004 615246 D cell division modulator 615004..615246 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901690.1 CDS STU288_02925 NC_021151.1 615348 616739 R COG1823 Predicted Na+/dicarboxylate symporter; sodium:dicarboxylate symporter family protein complement(615348..616739) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901691.1 CDS STU288_02930 NC_021151.1 616876 617463 R COG1988 Predicted membrane-bound metal-dependent hydrolases; hypothetical protein complement(616876..617463) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901692.1 CDS STU288_02935 NC_021151.1 617613 618281 R COG0637 Predicted phosphatase/phosphohexomutase; 2-deoxyglucose-6-phosphatase complement(617613..618281) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901693.1 CDS STU288_02940 NC_021151.1 618430 618966 D hypothetical protein 618430..618966 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901694.1 CDS STU288_02945 NC_021151.1 619009 619869 R COG3001 Fructosamine-3-kinase; hypothetical protein complement(619009..619869) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901695.1 CDS STU288_02950 NC_021151.1 619976 620266 R hypothetical protein complement(619976..620266) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901696.1 CDS STU288_02955 NC_021151.1 620363 621295 R COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 6-phosphofructokinase 2 complement(620363..621295) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901697.1 CDS STU288_02960 NC_021151.1 621584 622342 D COG3137 Putative salt-induced outer membrane protein; hypothetical protein 621584..622342 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901698.1 CDS STU288_02965 NC_021151.1 622391 623350 R COG3528 Uncharacterized protein conserved in bacteria; outer membrane protein complement(622391..623350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901699.1 CDS STU288_02970 NC_021151.1 623493 623807 D hypothetical protein 623493..623807 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901700.1 CDS STU288_02975 NC_021151.1 623804 624658 D COG1864 DNA/RNA endonuclease G, NUC1; putative DNA/RNA non-specific endonuclease 623804..624658 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901701.1 CDS STU288_02980 NC_021151.1 625360 626583 R O-antigen polymerase complement(625360..626583) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901702.1 CDS thrS NC_021151.1 627475 629403 D COG0441 Threonyl-tRNA synthetase; threonyl-tRNA ligase 627475..629403 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901703.1 CDS STU288_02990 NC_021151.1 629515 629949 D COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 629515..629949 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901704.1 CDS rpmI NC_021151.1 630045 630242 D COG0291 Ribosomal protein L35; 50S ribosomal protein L35 630045..630242 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901705.1 CDS STU288_03000 NC_021151.1 630293 630649 D COG0292 Ribosomal protein L20; LSU ribosomal protein L20P 630293..630649 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901706.1 CDS pheS NC_021151.1 630951 631934 D COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA ligase subunit alpha 630951..631934 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901707.1 CDS pheT NC_021151.1 631950 634337 D COG0073 EMAP domain; phenylalanyl-tRNA ligase subunit beta 631950..634337 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901708.1 CDS ihfA NC_021151.1 634342 634641 D COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit alpha 634342..634641 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901709.1 CDS STU288_03020 NC_021151.1 634844 635824 D COG4139 ABC-type cobalamin transport system, permease component; vtamin B12-transporter permease 634844..635824 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901710.1 CDS btuE NC_021151.1 635916 636467 D COG0386 Glutathione peroxidase; glutathione peroxidase 635916..636467 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901711.1 CDS STU288_03030 NC_021151.1 636467 637216 D COG4138 ABC-type cobalamin transport system, ATPase component; vitamin B12-transporter ATPase 636467..637216 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901712.1 CDS STU288_03035 NC_021151.1 637293 637757 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein nlpC 637293..637757 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901713.1 CDS STU288_03040 NC_021151.1 638071 638784 D COG2200 FOG: EAL domain; hypothetical protein 638071..638784 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901714.1 CDS STU288_03045 NC_021151.1 638846 640288 D COG0397 Uncharacterized conserved protein; hypothetical protein 638846..640288 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901715.1 CDS STU288_03050 NC_021151.1 640323 640514 R COG4256 Hemin uptake protein; hypothetical protein complement(640323..640514) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901716.1 CDS STU288_03055 NC_021151.1 640671 641717 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(640671..641717) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901717.1 CDS STU288_03060 NC_021151.1 641873 642706 R COG1806 Uncharacterized protein conserved in bacteria; PEP synthetase regulatory protein complement(641873..642706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901718.1 CDS STU288_03065 NC_021151.1 642883 642996 R hypothetical protein complement(642883..642996) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901719.1 CDS STU288_03070 NC_021151.1 643043 645421 D COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 643043..645421 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901720.1 CDS STU288_03075 NC_021151.1 645463 647103 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; short chain acyl-CoA synthetase complement(645463..647103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901721.1 CDS STU288_03080 NC_021151.1 647193 647486 R COG2440 Ferredoxin-like protein; 4Fe-4S ferredoxin complement(647193..647486) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901722.1 CDS STU288_03085 NC_021151.1 647483 648769 R COG0644 Dehydrogenases (flavoproteins); oxidoreductase complement(647483..648769) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901723.1 CDS STU288_03090 NC_021151.1 648826 649761 R COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit YdiR complement(648826..649761) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901724.1 CDS STU288_03095 NC_021151.1 649783 650547 R COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein complement(649783..650547) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901725.1 CDS STU288_03100 NC_021151.1 651010 651900 D COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional regulator 651010..651900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901726.1 CDS STU288_03105 NC_021151.1 651976 653127 R COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase complement(651976..653127) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901727.1 CDS STU288_03110 NC_021151.1 653141 654736 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; propionate CoA-transferase complement(653141..654736) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901728.1 CDS aroD NC_021151.1 654890 655648 R COG0710 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase complement(654890..655648) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901729.1 CDS STU288_03120 NC_021151.1 655693 656559 R COG0169 Shikimate 5-dehydrogenase; quinate/shikimate dehydrogenase complement(655693..656559) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901730.1 CDS STU288_03125 NC_021151.1 656626 657861 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(656626..657861) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901731.1 CDS STU288_03130 NC_021151.1 658225 659436 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(658225..659436) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901732.1 CDS STU288_03135 NC_021151.1 659577 659933 R hypothetical protein complement(659577..659933) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901733.1 CDS STU288_03140 NC_021151.1 660394 661512 R COG0628 Predicted permease; hypothetical protein complement(660394..661512) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901734.1 CDS STU288_03145 NC_021151.1 661777 664833 D COG0277 FAD/FMN-containing dehydrogenases; FAD-binding protein 661777..664833 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901735.1 CDS STU288_03150 NC_021151.1 664830 665240 D COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; acyl-CoA esterase 664830..665240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901736.1 CDS STU288_03155 NC_021151.1 665339 665527 D putative cytoplasmic protein 665339..665527 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901737.1 CDS STU288_03160 NC_021151.1 665815 667161 R COG1823 Predicted Na+/dicarboxylate symporter; putative Na+-dicarboxylate symporter complement(665815..667161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901738.1 CDS sufA NC_021151.1 667588 667956 D COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly scaffold protein 667588..667956 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901739.1 CDS STU288_03170 NC_021151.1 667965 669452 D COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufB 667965..669452 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901740.1 CDS sufC NC_021151.1 669469 670215 D COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; cysteine desulfurase ATPase component 669469..670215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901741.1 CDS STU288_03180 NC_021151.1 670190 671461 D COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufD 670190..671461 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901742.1 CDS STU288_03185 NC_021151.1 671458 672678 D COG0520 Selenocysteine lyase; bifunctional cysteine desulfurase/selenocysteine lyase 671458..672678 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901743.1 CDS STU288_03190 NC_021151.1 672691 673107 D COG2166 SufE protein probably involved in Fe-S center assembly; cysteine desufuration protein SufE 672691..673107 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901744.1 CDS STU288_03195 NC_021151.1 673262 674263 D COG1376 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 673262..674263 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901745.1 CDS STU288_03200 NC_021151.1 674330 674569 R COG4238 Murein lipoprotein; murein lipoprotein complement(674330..674569) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901746.1 CDS STU288_03205 NC_021151.1 674652 674888 R COG4238 Murein lipoprotein; murein lipoprotein complement(674652..674888) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901747.1 CDS STU288_03210 NC_021151.1 675199 676611 R COG0469 Pyruvate kinase; pyruvate kinase complement(675199..676611) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901748.1 CDS STU288_03215 NC_021151.1 677013 678356 R COG0531 Amino acid transporters; amino acid permease complement(677013..678356) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901749.1 CDS STU288_03220 NC_021151.1 678378 679271 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hydrolase complement(678378..679271) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901750.1 CDS STU288_03225 NC_021151.1 679330 680067 R COG5426 Uncharacterized membrane protein; hypothetical protein complement(679330..680067) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901751.1 CDS STU288_03230 NC_021151.1 680079 681305 R COG1349 Transcriptional regulators of sugar metabolism; ribokinase/regulatory protein complement(680079..681305) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901752.1 CDS STU288_03235 NC_021151.1 681628 684690 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; tetrathionate reductase subunit A complement(681628..684690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901753.1 CDS STU288_03240 NC_021151.1 684683 685705 R tetrathionate reductase subunit C complement(684683..685705) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901754.1 CDS STU288_03245 NC_021151.1 685706 686440 R COG0437 Fe-S-cluster-containing hydrogenase components 1; tetrathionate reductase subunit B complement(685706..686440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901755.1 CDS STU288_03250 NC_021151.1 686652 688400 D COG0642 Signal transduction histidine kinase; histidine kinase, two component regulatory protein 686652..688400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901756.1 CDS STU288_03255 NC_021151.1 688375 688995 D COG4566 Response regulator; response regulator 688375..688995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901757.1 CDS STU288_03260 NC_021151.1 689093 689305 D hypothetical protein 689093..689305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901758.1 CDS STU288_03265 NC_021151.1 689401 690360 R COG1683 Uncharacterized conserved protein; hypothetical protein complement(689401..690360) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901759.1 CDS STU288_03270 NC_021151.1 690533 691261 R COG0789 Predicted transcriptional regulators; putative regulatory protein complement(690533..691261) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901760.1 CDS STU288_03275 NC_021151.1 691440 692078 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two component system sensor kinase SsrB complement(691440..692078) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901761.1 CDS STU288_03280 NC_021151.1 692109 694871 R COG0642 Signal transduction histidine kinase; two component system sensor kinase SsrA complement(692109..694871) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901762.1 CDS STU288_03285 NC_021151.1 695272 695673 D pathogenicity island chaperone protein SpiC 695272..695673 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901763.1 CDS STU288_03290 NC_021151.1 695675 697168 D COG1450 Type II secretory pathway, component PulD; outer membrane secretin SsaC 695675..697168 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901764.1 CDS STU288_03295 NC_021151.1 697149 698360 D type III secretion system protein SsaD 697149..698360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901765.1 CDS STU288_03300 NC_021151.1 698368 698610 D type III secretion system chaperone SsaE 698368..698610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901766.1 CDS STU288_03305 NC_021151.1 698874 699200 D COG0078 Ornithine carbamoyltransferase; type III secretion system chaperone SseA 698874..699200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901767.1 CDS STU288_03310 NC_021151.1 699207 699797 D pathogenicity island 2 effector protein SseB 699207..699797 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901768.1 CDS STU288_03315 NC_021151.1 699794 700267 D COG0457 FOG: TPR repeat; pathogenicity island 2 chaperone protein SscA 699794..700267 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901769.1 CDS STU288_03320 NC_021151.1 700270 701724 D COG5613 Uncharacterized conserved protein; pathogenicity island 2 effector protein SseC 700270..701724 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901770.1 CDS STU288_03325 NC_021151.1 701740 702327 D pathogenicity island 2 effector protein SseD 701740..702327 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901771.1 CDS STU288_03330 NC_021151.1 702330 702746 D COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); pathogenicity island 2 effector protein SseE 702330..702746 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901772.1 CDS STU288_03335 NC_021151.1 702798 703232 D COG0457 FOG: TPR repeat; type III secretion system chaperone protein SscB 702798..703232 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901773.1 CDS STU288_03340 NC_021151.1 703248 704030 D pathogenicity island 2 effector protein SseF 703248..704030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901774.1 CDS STU288_03345 NC_021151.1 704027 704716 D pathogenicity island 2 effector protein SseG 704027..704716 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901775.1 CDS STU288_03350 NC_021151.1 704810 705025 D type III secretion system needle protein SsaG 704810..705025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901776.1 CDS STU288_03355 NC_021151.1 705066 705293 D type III secretion system protein SsaH 705066..705293 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901777.1 CDS STU288_03360 NC_021151.1 705305 705553 D type III secretion system protein SsaI 705305..705553 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901778.1 CDS STU288_03365 NC_021151.1 705550 706299 D COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein SsaJ 705550..706299 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901779.1 CDS STU288_03370 NC_021151.1 706317 706865 D Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) 706317..706865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901780.1 CDS STU288_03375 NC_021151.1 706862 707536 D type III secretion system protein SsaK 706862..707536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901781.1 CDS STU288_03380 NC_021151.1 707526 708518 D type III secretion system protein SsaL 707526..708518 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901782.1 CDS STU288_03385 NC_021151.1 708576 708944 D type III secretion system protein SsaM 708576..708944 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901783.1 CDS STU288_03390 NC_021151.1 708929 710974 D COG4789 Type III secretory pathway, component EscV; secretion system apparatus protein SsaV 708929..710974 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901784.1 CDS STU288_03395 NC_021151.1 710964 712265 D COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; type III secretion system ATPase SsaN 710964..712265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901785.1 CDS STU288_03400 NC_021151.1 712268 712645 D type III secretion system protein SsaO 712268..712645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901786.1 CDS STU288_03405 NC_021151.1 712626 713000 D type III secretion system protein SsaP 712626..713000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901787.1 CDS STU288_03410 NC_021151.1 712981 713949 D COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SsaQ 712981..713949 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901788.1 CDS STU288_03415 NC_021151.1 714017 714664 D COG4790 Type III secretory pathway, component EscR; type III secretion system protein YscR 714017..714664 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901789.1 CDS STU288_03420 NC_021151.1 714661 714927 D COG4794 Type III secretory pathway, component EscS; type III secretion system protein SsaS 714661..714927 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901790.1 CDS STU288_03425 NC_021151.1 714928 715707 D COG4791 Type III secretory pathway, component EscT; type III secretion system protein SsaT 714928..715707 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901791.1 CDS STU288_03430 NC_021151.1 715704 716762 D COG4792 Type III secretory pathway, component EscU; secretion system apparatus protein SsaU 715704..716762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901792.1 CDS STU288_03435 NC_021151.1 717235 718608 R COG0534 Na+-driven multidrug efflux pump; multidrug efflux protein complement(717235..718608) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901793.1 CDS STU288_03440 NC_021151.1 718825 719466 D COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 718825..719466 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901794.1 CDS STU288_03445 NC_021151.1 719508 720656 R COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acyl phospholipid synthase complement(719508..720656) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901795.1 CDS STU288_03450 NC_021151.1 720946 722151 R COG0477 Permeases of the major facilitator superfamily; transporter complement(720946..722151) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901796.1 CDS STU288_03455 NC_021151.1 722264 723196 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 722264..723196 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901797.1 CDS STU288_03460 NC_021151.1 723193 724218 R COG1609 Transcriptional regulators; DNA-binding transcriptional repressor PurR complement(723193..724218) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901798.1 CDS STU288_03465 NC_021151.1 724514 724603 D hypothetical protein 724514..724603 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901799.1 CDS STU288_03470 NC_021151.1 724686 725267 R COG0605 Superoxide dismutase; superoxide dismutase complement(724686..725267) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901800.1 CDS STU288_03475 NC_021151.1 725394 726215 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein complement(725394..726215) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901801.1 CDS STU288_03480 NC_021151.1 726550 726897 D COG0278 Glutaredoxin-related protein; glutaredoxin-4 726550..726897 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901802.1 CDS STU288_03485 NC_021151.1 726975 727622 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; ribonuclease T complement(726975..727622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901803.1 CDS STU288_03490 NC_021151.1 727723 728130 R COG0346 Lactoylglutathione lyase and related lyases; glyoxalase I complement(727723..728130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901804.1 CDS STU288_03495 NC_021151.1 728199 729296 R COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; N-ethylmaleimide reductase complement(728199..729296) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901805.1 CDS STU288_03500 NC_021151.1 729355 729954 R COG1309 Transcriptional regulator; transcriptional repressor NemR complement(729355..729954) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901806.1 CDS STU288_03505 NC_021151.1 730057 730296 D COG3313 Predicted Fe-S protein; putative oxidoreductase 730057..730296 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901807.1 CDS STU288_03510 NC_021151.1 730347 731243 D COG4989 Predicted oxidoreductase; oxidoreductase 730347..731243 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901808.1 CDS STU288_03515 NC_021151.1 731323 731844 D COG2032 Cu/Zn superoxide dismutase; superoxide dismutase 731323..731844 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901809.1 CDS STU288_03520 NC_021151.1 731820 733859 R COG1289 Predicted membrane protein; putative inner membrane protein complement(731820..733859) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901810.1 CDS STU288_03525 NC_021151.1 733859 734719 R COG1566 Multidrug resistance efflux pump; HlyD-family protein complement(733859..734719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901811.1 CDS STU288_03530 NC_021151.1 734722 734958 R putative inner membrane protein complement(734722..734958) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901812.1 CDS STU288_03535 NC_021151.1 735159 735593 D COG1846 Transcriptional regulators; transcriptional regulator SlyA 735159..735593 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901813.1 CDS STU288_03540 NC_021151.1 735641 736108 R COG3133 Outer membrane lipoprotein; outer membrane lipoprotein SlyB complement(735641..736108) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901814.1 CDS anmK NC_021151.1 736380 737501 D COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases; anhydro-N-acetylmuramic acid kinase 736380..737501 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901815.1 CDS STU288_03550 NC_021151.1 737589 737918 D COG3895 Predicted periplasmic protein; lysozyme inhibitor 737589..737918 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901816.1 CDS STU288_03555 NC_021151.1 737977 738633 D COG0259 Pyridoxamine-phosphate oxidase; pyridoxamine 5'-phosphate oxidase 737977..738633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901817.1 CDS STU288_03560 NC_021151.1 738760 740034 D COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA ligase 738760..740034 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901818.1 CDS STU288_03565 NC_021151.1 740094 740954 D COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxamine kinase 740094..740954 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901819.1 CDS STU288_03570 NC_021151.1 741013 741618 R COG0625 Glutathione S-transferase; glutathionine S-transferase complement(741013..741618) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901820.1 CDS tppB NC_021151.1 741723 743228 R COG3104 Dipeptide/tripeptide permease; tripeptide transporter permease complement(741723..743228) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901821.1 CDS STU288_03580 NC_021151.1 743830 744465 R COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(743830..744465) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901822.1 CDS STU288_03585 NC_021151.1 744465 745157 R COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; electron transport complex RsxE subunit complement(744465..745157) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901823.1 CDS STU288_03590 NC_021151.1 745160 745780 R COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; electron transport complex protein RnfG complement(745160..745780) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901824.1 CDS rnfD NC_021151.1 745784 746842 R COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; electron transport complex protein RnfD complement(745784..746842) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901825.1 CDS STU288_03600 NC_021151.1 746843 749050 R COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; electron transport complex protein RnfC complement(746843..749050) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901826.1 CDS STU288_03605 NC_021151.1 749043 749621 R COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; electron transport complex protein RnfB complement(749043..749621) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901827.1 CDS STU288_03610 NC_021151.1 749621 750202 R COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; electron transport complex protein RsxA complement(749621..750202) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901828.1 CDS STU288_03615 NC_021151.1 750279 750719 R hypothetical protein complement(750279..750719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901829.1 CDS STU288_03620 NC_021151.1 750808 751023 R oriC-binding nucleoid-associated protein complement(750808..751023) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901830.1 CDS STU288_03625 NC_021151.1 751654 752694 D COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 751654..752694 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901831.1 CDS STU288_03630 NC_021151.1 752769 753770 R COG1816 Adenosine deaminase; adenosine deaminase complement(752769..753770) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901832.1 CDS STU288_03635 NC_021151.1 754136 754285 R COG1264 Phosphotransferase system IIB components; bifunctional PTS system maltose and glucose-specific transporter subunits IICB complement(754136..754285) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901833.1 CDS STU288_03640 NC_021151.1 754474 755982 R COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein complement(754474..755982) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901834.1 CDS STU288_03645 NC_021151.1 756085 757260 R COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase complement(756085..757260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901835.1 CDS STU288_03650 NC_021151.1 757460 759106 D COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumA 757460..759106 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901836.1 CDS fumC NC_021151.1 759274 760677 D COG0114 Fumarase; fumarate hydratase 759274..760677 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901837.1 CDS STU288_03660 NC_021151.1 760674 761603 R DNA replication terminus site-binding protein complement(760674..761603) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901838.1 CDS STU288_03665 NC_021151.1 761679 762980 R COG0642 Signal transduction histidine kinase; sensor protein RstB complement(761679..762980) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901839.1 CDS STU288_03670 NC_021151.1 763091 764791 R COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold; hypothetical protein complement(763091..764791) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901840.1 CDS STU288_03675 NC_021151.1 764950 766083 R COG3203 Outer membrane protein (porin); outer membrane protein complement(764950..766083) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901841.1 CDS STU288_03680 NC_021151.1 766200 766385 D hypothetical protein 766200..766385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901842.1 CDS STU288_03685 NC_021151.1 766563 767294 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator RstA complement(766563..767294) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901843.1 CDS STU288_03690 NC_021151.1 767421 767756 D COG3136 Uncharacterized membrane protein required for alginate biosynthesis; GlpM family protein 767421..767756 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901844.1 CDS STU288_03695 NC_021151.1 767818 769200 R COG0531 Amino acid transporters; arginine/ornithine antiporter complement(767818..769200) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901845.1 CDS STU288_03700 NC_021151.1 769499 770443 R Protein ydgH Flags: Precursor complement(769499..770443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901846.1 CDS pntA NC_021151.1 770970 772499 D COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha 770970..772499 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901847.1 CDS pntB NC_021151.1 772510 773898 D COG1282 NAD/NADP transhydrogenase beta subunit; pyridine nucleotide transhydrogenase 772510..773898 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901848.1 CDS tqsA NC_021151.1 774073 775107 R COG0628 Predicted permease; pheromone autoinducer 2 transporter complement(774073..775107) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901849.1 CDS STU288_03720 NC_021151.1 775525 775887 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtJ 775525..775887 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901850.1 CDS STU288_03725 NC_021151.1 775874 776203 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtI 775874..776203 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901851.1 CDS STU288_03730 NC_021151.1 776243 777064 R COG3591 V8-like Glu-specific endopeptidase; hypothetical protein complement(776243..777064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901852.1 CDS STU288_03735 NC_021151.1 777333 777581 R acid shock protein precursor complement(777333..777581) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901853.1 CDS STU288_03740 NC_021151.1 777817 777909 D hypothetical protein 777817..777909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901854.1 CDS STU288_03745 NC_021151.1 777976 779229 R COG0477 Permeases of the major facilitator superfamily; putative transporter complement(777976..779229) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901855.1 CDS STU288_03750 NC_021151.1 779349 780248 D COG0583 Transcriptional regulator; putative HTH-type transcriptional regulator ywbI 779349..780248 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901856.1 CDS STU288_03755 NC_021151.1 780376 781596 D COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional repressor DgsA 780376..781596 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901857.1 CDS STU288_03760 NC_021151.1 781722 782417 D COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 781722..782417 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901858.1 CDS STU288_03765 NC_021151.1 782373 783626 R COG0038 Chloride channel protein EriC; voltage-gated ClC-type chloride channel ClcB complement(782373..783626) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901859.1 CDS STU288_03770 NC_021151.1 783798 784946 R COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; ABC transporter ATP-binding protein complement(783798..784946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901860.1 CDS STU288_03775 NC_021151.1 784946 785593 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; Glycine betaine/carnitine/choline transport system permease protein opuCB complement(784946..785593) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901861.1 CDS STU288_03780 NC_021151.1 785603 786505 R COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); Glycine betaine/carnitine/choline-binding protein complement(785603..786505) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901862.1 CDS STU288_03785 NC_021151.1 786534 787244 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; binding-protein-dependent transport system inner membrane protein complement(786534..787244) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901863.1 CDS STU288_03790 NC_021151.1 787549 788163 R COG3381 Uncharacterized component of anaerobic dehydrogenases; twin-argninine leader-binding protein DmsD complement(787549..788163) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901864.1 CDS STU288_03795 NC_021151.1 788206 789063 R COG3302 DMSO reductase anchor subunit; dimethyl sulfoxide reductase subunit complement(788206..789063) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901865.1 CDS STU288_03800 NC_021151.1 789065 789682 R COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase complement(789065..789682) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901866.1 CDS STU288_03805 NC_021151.1 789693 792128 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; dimethyl sulfoxide reductase subunit complement(789693..792128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901867.1 CDS STU288_03810 NC_021151.1 792227 794665 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a complement(792227..794665) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901868.1 CDS STU288_03815 NC_021151.1 794822 795127 R hypothetical protein complement(794822..795127) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901869.1 CDS STU288_03820 NC_021151.1 795234 795944 D lipoprotein 795234..795944 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901870.1 CDS STU288_03825 NC_021151.1 795985 796545 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; spermidine N1-acetyltransferase complement(795985..796545) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901871.1 CDS STU288_03830 NC_021151.1 796581 796922 R hypothetical protein complement(796581..796922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901872.1 CDS STU288_03835 NC_021151.1 797075 797401 D COG1742 Uncharacterized conserved protein; hypothetical protein 797075..797401 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901873.1 CDS STU288_03840 NC_021151.1 797523 798737 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase 797523..798737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901874.1 CDS STU288_03845 NC_021151.1 798748 799767 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase 798748..799767 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901875.1 CDS STU288_03860 NC_021151.1 801344 802810 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 801344..802810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901876.1 CDS STU288_03865 NC_021151.1 802877 803080 R hypothetical protein complement(802877..803080) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901877.1 CDS STU288_03870 NC_021151.1 803261 803947 R COG1802 Transcriptional regulators; GntR family transcriptional regulator complement(803261..803947) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901878.1 CDS STU288_03875 NC_021151.1 804077 804823 R COG4221 Short-chain alcohol dehydrogenase of unknown specificity; malonic semialdehyde reductase complement(804077..804823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901879.1 CDS STU288_03880 NC_021151.1 804962 807004 D COG0339 Zn-dependent oligopeptidases; dipeptidyl carboxypeptidase II 804962..807004 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901880.1 CDS STU288_03885 NC_021151.1 807651 808178 R COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein complement(807651..808178) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901881.1 CDS STU288_03890 NC_021151.1 808605 808997 D COG3111 Uncharacterized conserved protein; hypothetical protein 808605..808997 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901882.1 CDS STU288_03895 NC_021151.1 809346 809441 R hypothetical protein complement(809346..809441) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901883.1 CDS STU288_03900 NC_021151.1 809689 810876 R COG0477 Permeases of the major facilitator superfamily; transporter complement(809689..810876) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901884.1 CDS STU288_03905 NC_021151.1 811107 812006 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; O-acetylserine/cysteine export protein 811107..812006 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901885.1 CDS STU288_03910 NC_021151.1 812125 812340 R hypothetical protein complement(812125..812340) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901886.1 CDS STU288_03915 NC_021151.1 812369 812752 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator MarA complement(812369..812752) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901887.1 CDS STU288_03920 NC_021151.1 812772 813206 R COG1846 Transcriptional regulators; DNA-binding transcriptional repressor MarR complement(812772..813206) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901888.1 CDS STU288_03925 NC_021151.1 813465 814130 D COG2095 Multiple antibiotic transporter; hypothetical protein 813465..814130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901889.1 CDS STU288_03930 NC_021151.1 814177 815367 R COG2814 Arabinose efflux permease; arabinose transporter complement(814177..815367) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901890.1 CDS STU288_03935 NC_021151.1 815483 816355 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(815483..816355) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901891.1 CDS STU288_03940 NC_021151.1 816458 817846 D COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase 816458..817846 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901892.1 CDS STU288_03945 NC_021151.1 817919 818845 D COG2066 Glutaminase; glutaminase 817919..818845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901893.1 CDS STU288_03950 NC_021151.1 818845 819204 D hypothetical protein 818845..819204 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901894.1 CDS STU288_03955 NC_021151.1 819461 820375 D COG3781 Predicted membrane protein; hypothetical protein 819461..820375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901895.1 CDS STU288_03960 NC_021151.1 820431 820973 R putative outer membrane protein complement(820431..820973) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901896.1 CDS STU288_03965 NC_021151.1 821690 822808 D COG3203 Outer membrane protein (porin); outer membrane protein N 821690..822808 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901897.1 CDS STU288_03970 NC_021151.1 822949 823290 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase complement(822949..823290) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901898.1 CDS STU288_03975 NC_021151.1 823303 824190 R COG0374 Ni,Fe-hydrogenase I large subunit; dehydrogenase complement(823303..824190) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901899.1 CDS STU288_03980 NC_021151.1 824178 825239 R COG1773 Rubredoxin; hydrogenase-1 operon protein HyaF2 complement(824178..825239) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901900.1 CDS STU288_03985 NC_021151.1 825257 825667 R COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE2 complement(825257..825667) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901901.1 CDS STU288_03990 NC_021151.1 825664 825963 R hydrogenase isoenzymes formation protein complement(825664..825963) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901902.1 CDS STU288_03995 NC_021151.1 825963 826571 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease complement(825963..826571) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901903.1 CDS STU288_04000 NC_021151.1 826577 827320 R COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase 1 b-type cytochrome subunit HyaC2 complement(826577..827320) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901904.1 CDS STU288_04005 NC_021151.1 827271 829073 R COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase-1 large subunit complement(827271..829073) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901905.1 CDS STU288_04010 NC_021151.1 829076 830179 R COG1740 Ni,Fe-hydrogenase I small subunit; uptake hydrogenase small subunit complement(829076..830179) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901906.1 CDS STU288_04015 NC_021151.1 830307 830459 R hypothetical protein complement(830307..830459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901907.1 CDS STU288_04020 NC_021151.1 830608 831699 D COG3049 Penicillin V acylase and related amidases; putative hydrolase 830608..831699 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901908.1 CDS STU288_04025 NC_021151.1 831865 832536 D COG2186 Transcriptional regulators; putative regulatory protein 831865..832536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901909.1 CDS STU288_04030 NC_021151.1 832595 833620 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc-type alcohol dehydrogenase complement(832595..833620) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901910.1 CDS STU288_04035 NC_021151.1 833595 834881 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(833595..834881) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901911.1 CDS STU288_04040 NC_021151.1 835058 836548 R COG4287 PhoPQ-activated pathogenicity-related protein; PhoPQ-regulated protein complement(835058..836548) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901912.1 CDS STU288_04045 NC_021151.1 836684 837925 R COG0477 Permeases of the major facilitator superfamily; multidrug efflux protein complement(836684..837925) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901913.1 CDS STU288_04050 NC_021151.1 837915 839423 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; hypothetical protein complement(837915..839423) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901914.1 CDS STU288_04055 NC_021151.1 839468 839956 D COG1846 Transcriptional regulators; regulatory protein 839468..839956 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901915.1 CDS STU288_04060 NC_021151.1 840149 841228 D COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); isomerase 840149..841228 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901916.1 CDS STU288_04065 NC_021151.1 841280 841669 R COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein complement(841280..841669) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901917.1 CDS STU288_04070 NC_021151.1 841840 842124 R COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; RelE protein complement(841840..842124) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901918.1 CDS STU288_04075 NC_021151.1 842114 842362 R COG2161 Antitoxin of toxin-antitoxin stability system; RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) complement(842114..842362) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901919.1 CDS STU288_04080 NC_021151.1 842514 842729 D putative phage secreted protein 842514..842729 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901920.1 CDS STU288_04085 NC_021151.1 842719 843051 D hypothetical protein 842719..843051 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901921.1 CDS STU288_04090 NC_021151.1 843173 844102 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); putative cytoplasmic protein 843173..844102 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901922.1 CDS STU288_04095 NC_021151.1 844155 844547 D hypothetical protein 844155..844547 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901923.1 CDS STU288_04100 NC_021151.1 844510 844872 R COG2801 Transposase and inactivated derivatives; putative transposase complement(844510..844872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901924.1 CDS STU288_04105 NC_021151.1 845191 845301 R hypothetical protein complement(845191..845301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901925.1 CDS STU288_04110 NC_021151.1 845680 847143 R hypothetical protein complement(845680..847143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901926.1 CDS STU288_04115 NC_021151.1 847405 848412 D COG1609 Transcriptional regulators; LacI family transcriptional regulator 847405..848412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901927.1 CDS STU288_04120 NC_021151.1 848556 850007 D COG1757 Na+/H+ antiporter; Na+/H+ antiporter NhaC 848556..850007 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901928.1 CDS STU288_04125 NC_021151.1 850020 851222 D COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase 850020..851222 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901929.1 CDS STU288_04130 NC_021151.1 851335 853410 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; putative glycosyl hydrolase complement(851335..853410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901930.1 CDS STU288_04135 NC_021151.1 853467 855995 R COG3280 Maltooligosyl trehalose synthase; hydrolase complement(853467..855995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901931.1 CDS STU288_04140 NC_021151.1 855992 857776 R COG0296 1,4-alpha-glucan branching enzyme; 3-oxoacyl-ACP synthase complement(855992..857776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901932.1 CDS STU288_04145 NC_021151.1 857905 858690 R hypothetical protein complement(857905..858690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901933.1 CDS hdeB NC_021151.1 858833 859162 R acid-resistance protein complement(858833..859162) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901934.1 CDS STU288_04155 NC_021151.1 859512 859943 R COG1764 Predicted redox protein, regulator of disulfide bond formation; peroxiredoxin OsmC complement(859512..859943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901935.1 CDS STU288_04160 NC_021151.1 860456 860671 D biofilm-dependent modulation protein 860456..860671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901936.1 CDS rpsV NC_021151.1 860766 860909 D 30S ribosomal subunit S22 860766..860909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901937.1 CDS STU288_04170 NC_021151.1 860807 860938 R hypothetical protein complement(860807..860938) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901938.1 CDS STU288_04175 NC_021151.1 861086 862783 D COG0281 Malic enzyme; malate dehydrogenase 861086..862783 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901939.1 CDS STU288_04180 NC_021151.1 863069 864079 D COG1064 Zn-dependent alcohol dehydrogenases; ethanol-active dehydrogenase/acetaldehyde-active reductase 863069..864079 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901940.1 CDS STU288_04185 NC_021151.1 864170 864826 R COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(864170..864826) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901941.1 CDS STU288_04190 NC_021151.1 864819 865703 R COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-N subunit beta complement(864819..865703) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901942.1 CDS STU288_04205 NC_021151.1 869042 869923 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; aromatic amino acid exporter 869042..869923 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901943.1 CDS STU288_04210 NC_021151.1 870448 871536 D COG3203 Outer membrane protein (porin); outer membrane protein 870448..871536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901944.1 CDS STU288_04215 NC_021151.1 871620 872060 D COG3791 Uncharacterized conserved protein; hypothetical protein 871620..872060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901945.1 CDS STU288_04220 NC_021151.1 872085 873572 R COG0477 Permeases of the major facilitator superfamily; methyl viologen resistance protein SmvA complement(872085..873572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901946.1 CDS STU288_04225 NC_021151.1 873690 874268 D COG1309 Transcriptional regulator; TetR family transcriptional regulator 873690..874268 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901947.1 CDS STU288_04230 NC_021151.1 874483 875871 D COG2223 Nitrate/nitrite transporter; nitrate/nitrite transport protein NarU 874483..875871 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901948.1 CDS narZ NC_021151.1 875963 879703 D COG5013 Nitrate reductase alpha subunit; nitrate reductase Z subunit alpha 875963..879703 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901949.1 CDS narY NC_021151.1 879700 881244 D COG1140 Nitrate reductase beta subunit; nitrate reductase Z subunit beta 879700..881244 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901950.1 CDS STU288_04245 NC_021151.1 881244 881939 D COG2180 Nitrate reductase delta subunit; nitrate reductase 2 subunit delta 881244..881939 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901951.1 CDS STU288_04250 NC_021151.1 881936 882616 D COG2181 Nitrate reductase gamma subunit; nitrate reductase 2 subunit gamma 881936..882616 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901952.1 CDS STU288_04255 NC_021151.1 882722 883615 D COG0384 Predicted epimerase, PhzC/PhzF homolog; hypothetical protein 882722..883615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901953.1 CDS STU288_04260 NC_021151.1 883651 884496 R COG2162 Arylamine N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase complement(883651..884496) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901954.1 CDS STU288_04265 NC_021151.1 884780 885412 R hypothetical protein complement(884780..885412) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901955.1 CDS STU288_04270 NC_021151.1 885925 887418 D COG1113 Gamma-aminobutyrate permease and related permeases; L-asparagine permease 885925..887418 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901956.1 CDS STU288_04275 NC_021151.1 887495 887716 R putative lipoprotein ygdR Flags: Precursor complement(887495..887716) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901957.1 CDS STU288_04280 NC_021151.1 887861 888922 R COG3391 Uncharacterized conserved protein; ATP-binding protein complement(887861..888922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901958.1 CDS STU288_04285 NC_021151.1 889186 891306 D COG1629 Outer membrane receptor proteins, mostly Fe transport; putative outer membrane receptor 889186..891306 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901959.1 CDS STU288_04290 NC_021151.1 891373 892038 R COG1802 Transcriptional regulators; colanic acid/biofilm transcriptional regulator complement(891373..892038) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901960.1 CDS STU288_04295 NC_021151.1 892372 893409 R COG2130 Putative NADP-dependent oxidoreductases; NADP-dependent oxidoreductase complement(892372..893409) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901961.1 CDS STU288_04300 NC_021151.1 893621 894136 D COG1247 Sortase and related acyltransferases; acetyltransferase 893621..894136 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901962.1 CDS STU288_04305 NC_021151.1 894136 894585 D COG3238 Uncharacterized protein conserved in bacteria; Inner membrane protein ydcZ 894136..894585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901963.1 CDS STU288_04310 NC_021151.1 894590 894823 R hypothetical protein complement(894590..894823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901964.1 CDS STU288_04315 NC_021151.1 895047 896366 D putative virulence protein 895047..896366 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901965.1 CDS STU288_04320 NC_021151.1 896371 899352 D COG4457 Uncharacterized protein conserved in bacteria, putative virulence factor; putative virulence protein 896371..899352 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901966.1 CDS STU288_04325 NC_021151.1 899349 901493 D COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor; virulence effector protein 899349..901493 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901967.1 CDS STU288_04330 NC_021151.1 901538 901711 R inner membrane protein complement(901538..901711) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901968.1 CDS STU288_04335 NC_021151.1 902110 903534 R COG1012 NAD-dependent aldehyde dehydrogenases; gamma-aminobutyraldehyde dehydrogenase complement(902110..903534) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901969.1 CDS STU288_04340 NC_021151.1 903670 905094 R COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; classes I and II superfamily aminotransferase complement(903670..905094) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901970.1 CDS STU288_04345 NC_021151.1 905230 906000 R COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase complement(905230..906000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901971.1 CDS STU288_04350 NC_021151.1 906522 906920 R hypothetical protein complement(906522..906920) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901972.1 CDS sifB NC_021151.1 907457 908407 D secreted effector protein SifB 907457..908407 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901973.1 CDS STU288_04360 NC_021151.1 908681 908911 D hypothetical protein 908681..908911 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901974.1 CDS STU288_04365 NC_021151.1 908912 910876 R COG0826 Collagenase and related proteases; putative peptidase complement(908912..910876) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901975.1 CDS STU288_04370 NC_021151.1 910955 911491 R COG1396 Predicted transcriptional regulators; DNA-binding protein complement(910955..911491) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901976.1 CDS STU288_04375 NC_021151.1 911582 912760 D COG3135 Uncharacterized protein involved in benzoate metabolism; benzoate membrane transport protein 911582..912760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901977.1 CDS STU288_04380 NC_021151.1 912814 913482 R putative lipoprotein ydcL Flags: Precursor complement(912814..913482) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901978.1 CDS STU288_04385 NC_021151.1 913638 914234 R COG0500 SAM-dependent methyltransferases; tellurite resistance protein TehB complement(913638..914234) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901979.1 CDS STU288_04390 NC_021151.1 914221 915234 R COG1275 Tellurite resistance protein and related permeases; potassium-tellurite ethidium and proflavin transporter complement(914221..915234) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901980.1 CDS STU288_04395 NC_021151.1 915341 916321 D COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); transferase 915341..916321 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901981.1 CDS STU288_04400 NC_021151.1 916318 916857 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-L7/L12-serine acetyltransferase complement(916318..916857) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901982.1 CDS STU288_04405 NC_021151.1 917074 918192 D COG1363 Cellulase M and related proteins; hypothetical protein 917074..918192 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901983.1 CDS STU288_04410 NC_021151.1 918189 918470 D COG3414 Phosphotransferase system, galactitol-specific IIB component; putative phosphotransferase enzyme 918189..918470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901984.1 CDS STU288_04415 NC_021151.1 918481 919794 D COG3775 Phosphotransferase system, galactitol-specific IIC component; putative phosphotransferase enzyme 918481..919794 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901985.1 CDS STU288_04420 NC_021151.1 919808 920614 D COG0434 Predicted TIM-barrel enzyme; Putative nucleoside triphosphatase 919808..920614 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901986.1 CDS STU288_04425 NC_021151.1 920746 921183 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); putative phosphotransferase enzyme 920746..921183 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901987.1 CDS STU288_04430 NC_021151.1 921195 921827 D COG0036 Pentose-5-phosphate-3-epimerase; epimerase 921195..921827 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901988.1 CDS STU288_04435 NC_021151.1 921843 922634 D COG1349 Transcriptional regulators of sugar metabolism; putative sgc region transcriptional regulator 921843..922634 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901989.1 CDS STU288_04440 NC_021151.1 922634 923071 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoglycoside 6'-N-acetyltransferase 922634..923071 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901990.1 CDS STU288_04445 NC_021151.1 923118 924320 R COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate oxidase complement(923118..924320) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901991.1 CDS STU288_04450 NC_021151.1 924332 924907 R COG2353 Uncharacterized conserved protein; hypothetical protein complement(924332..924907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901992.1 CDS mdoD NC_021151.1 925103 926758 R COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein D complement(925103..926758) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901993.1 CDS STU288_04460 NC_021151.1 926978 928486 R COG2272 Carboxylesterase type B; esterase complement(926978..928486) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901994.1 CDS STU288_04465 NC_021151.1 928535 929878 R COG5383 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(928535..929878) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901995.1 CDS STU288_04470 NC_021151.1 930171 931094 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 930171..931094 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901996.1 CDS STU288_04475 NC_021151.1 931155 932780 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein III complement(931155..932780) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901997.1 CDS STU288_04480 NC_021151.1 932949 934067 R COG1062 Zn-dependent alcohol dehydrogenases, class III; S-(hydroxymethyl)glutathione dehydrogenase complement(932949..934067) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901998.1 CDS STU288_04485 NC_021151.1 934099 934374 R COG1937 Uncharacterized protein conserved in bacteria; Transcriptional repressor frmR complement(934099..934374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007901999.1 CDS STU288_04490 NC_021151.1 935137 935262 R hypothetical protein complement(935137..935262) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902000.1 CDS STU288_04495 NC_021151.1 935427 936143 R hypothetical protein complement(935427..936143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902001.1 CDS STU288_04500 NC_021151.1 936569 937795 D COG3240 Phospholipase/lecithinase/hemolysin; pathogenicity island 2 effector protein SseJ 936569..937795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902002.1 CDS STU288_04505 NC_021151.1 937916 938260 R COG3326 Predicted membrane protein; Putative inner membrane protein complement(937916..938260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902003.1 CDS STU288_04510 NC_021151.1 939167 939928 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; periplasmic binding protein 939167..939928 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902004.1 CDS STU288_04515 NC_021151.1 939935 940582 D COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 939935..940582 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902005.1 CDS STU288_04520 NC_021151.1 940607 941338 D COG1126 ABC-type polar amino acid transport system, ATPase component; ABC transporter ATP-binding protein 940607..941338 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902006.1 CDS STU288_04525 NC_021151.1 941335 942015 D COG0765 ABC-type amino acid transport system, permease component; ABC-type transport system membrane component 941335..942015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902007.1 CDS STU288_04530 NC_021151.1 942152 943702 D COG5305 Predicted membrane protein; hypothetical protein 942152..943702 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902008.1 CDS STU288_04535 NC_021151.1 943703 943798 R hypothetical protein complement(943703..943798) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902009.1 CDS STU288_04540 NC_021151.1 944166 944828 D COG0500 SAM-dependent methyltransferases; methyltransferase 944166..944828 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902010.1 CDS STU288_04545 NC_021151.1 945099 945629 R COG3038 Cytochrome B561; cytochrome b561 complement(945099..945629) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902011.1 CDS STU288_04550 NC_021151.1 945746 946546 R COG1434 Uncharacterized conserved protein; Protein possibly involved in murein complement(945746..946546) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902012.1 CDS STU288_04555 NC_021151.1 946610 950455 R COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpA complement(946610..950455) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902013.1 CDS STU288_04560 NC_021151.1 950713 951318 D COG1182 Acyl carrier protein phosphodiesterase; azoreductase 950713..951318 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902014.1 CDS STU288_04565 NC_021151.1 951315 951764 R COG3791 Uncharacterized conserved protein; putative inner membrane protein complement(951315..951764) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902015.1 CDS STU288_04570 NC_021151.1 951907 952230 R COG3784 Uncharacterized protein conserved in bacteria; hypothetical protein complement(951907..952230) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902016.1 CDS STU288_04575 NC_021151.1 952238 952423 R hypothetical protein complement(952238..952423) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902017.1 CDS STU288_04580 NC_021151.1 952429 955065 R hypothetical protein complement(952429..955065) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902018.1 CDS STU288_04585 NC_021151.1 955305 956294 D COG1052 Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 955305..956294 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902019.1 CDS STU288_04590 NC_021151.1 956405 956815 D COG3187 Heat shock protein; heat-inducible protein 956405..956815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902020.1 CDS STU288_04595 NC_021151.1 956859 957125 R COG3042 Putative hemolysin; putative cytoplasmic protein complement(956859..957125) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902021.1 CDS STU288_04600 NC_021151.1 957401 960925 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate-flavodoxin oxidoreductase 957401..960925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902022.1 CDS STU288_04605 NC_021151.1 960984 961193 R hypothetical protein complement(960984..961193) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902023.1 CDS STU288_04610 NC_021151.1 961407 961841 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein F 961407..961841 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902024.1 CDS STU288_04615 NC_021151.1 961891 962229 R COG2076 Membrane transporters of cations and cationic drugs; multidrug transporter complement(961891..962229) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902025.1 CDS STU288_04620 NC_021151.1 962222 962374 R hypothetical protein complement(962222..962374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902026.1 CDS STU288_04625 NC_021151.1 962393 962533 D COG0582 Integrase; phage integrase 962393..962533 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902027.1 CDS STU288_04630 NC_021151.1 962585 963520 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA 2-thiocytidine biosynthesis protein TtcA 962585..963520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902028.1 CDS STU288_04635 NC_021151.1 963564 964937 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DbpA complement(963564..964937) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902029.1 CDS STU288_04640 NC_021151.1 964966 965148 R hypothetical protein complement(964966..965148) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902030.1 CDS STU288_04645 NC_021151.1 965321 965464 R hypothetical protein complement(965321..965464) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902031.1 CDS zntB NC_021151.1 965424 966407 R COG0598 Mg2+ and Co2+ transporters; zinc transporter complement(965424..966407) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902032.1 CDS STU288_04655 NC_021151.1 966553 967707 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(966553..967707) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902033.1 CDS STU288_04660 NC_021151.1 968118 968681 R COG2840 Uncharacterized protein conserved in bacteria; UPF0115 protein yfcN complement(968118..968681) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902034.1 CDS STU288_04665 NC_021151.1 968939 969454 D COG0350 Methylated DNA-protein cysteine methyltransferase; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 968939..969454 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902035.1 CDS STU288_04670 NC_021151.1 969650 970402 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; fumarate/nitrate reduction transcriptional regulator 969650..970402 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902036.1 CDS STU288_04675 NC_021151.1 970553 971500 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspE 970553..971500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902037.1 CDS STU288_04680 NC_021151.1 971555 971809 R hypothetical protein complement(971555..971809) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902038.1 CDS STU288_04685 NC_021151.1 972048 973079 D COG0668 Small-conductance mechanosensitive channel; MscS family inner membrane protein YnaI 972048..973079 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902039.1 CDS STU288_04690 NC_021151.1 973165 973767 R COG1396 Predicted transcriptional regulators; DNA-binding protein complement(973165..973767) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902040.1 CDS STU288_04695 NC_021151.1 973811 974497 D COG3382 Uncharacterized conserved protein; putative cytoplasmic protein 973811..974497 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902041.1 CDS STU288_04710 NC_021151.1 974969 975526 R COG2077 Peroxiredoxin; thiol peroxidase complement(974969..975526) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902042.1 CDS STU288_04715 NC_021151.1 975625 976449 R hypothetical protein complement(975625..976449) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902043.1 CDS STU288_04720 NC_021151.1 976476 978458 R invasin-like protein complement(976476..978458) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902044.1 CDS STU288_04725 NC_021151.1 978533 979378 R putative lipoprotein complement(978533..979378) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902045.1 CDS STU288_04730 NC_021151.1 979678 980529 D COG2207 AraC-type DNA-binding domain-containing proteins; regulatory protein 979678..980529 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902046.1 CDS STU288_04735 NC_021151.1 980920 982029 D hypothetical protein 980920..982029 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902047.1 CDS STU288_04740 NC_021151.1 982243 982479 R putative outer membrane lipoprotein complement(982243..982479) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902048.1 CDS STU288_04745 NC_021151.1 982608 983198 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(982608..983198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902049.1 CDS STU288_04750 NC_021151.1 983276 983989 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 983276..983989 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902050.1 CDS STU288_04755 NC_021151.1 984080 984949 R COG0656 Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase complement(984080..984949) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902051.1 CDS STU288_04760 NC_021151.1 985223 986128 R COG0583 Transcriptional regulator; transcriptional regulator complement(985223..986128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902052.1 CDS STU288_04765 NC_021151.1 986247 987176 D oxidoreductase 986247..987176 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902053.1 CDS STU288_04770 NC_021151.1 987273 988886 R COG4166 ABC-type oligopeptide transport system, periplasmic component; murein tripeptide ABC transporter periplasmic substrate-binding protein complement(987273..988886) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902054.1 CDS STU288_04775 NC_021151.1 989076 989804 D COG3608 Predicted deacylase; murein peptide amidase A 989076..989804 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902055.1 CDS STU288_04780 NC_021151.1 989779 990744 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-Ala-D/L-Glu epimerase complement(989779..990744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902056.1 CDS tpx NC_021151.1 990860 991366 D COG2077 Peroxiredoxin; lipid hydroperoxide peroxidase 990860..991366 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902057.1 CDS STU288_04790 NC_021151.1 991456 992997 R COG3283 Transcriptional regulator of aromatic amino acids metabolism; DNA-binding transcriptional regulator TyrR complement(991456..992997) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902058.1 CDS STU288_04795 NC_021151.1 993145 994206 R COG3768 Predicted membrane protein; hypothetical protein complement(993145..994206) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902059.1 CDS STU288_04800 NC_021151.1 994203 995600 R COG3106 Predicted ATPase; hypothetical protein complement(994203..995600) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902060.1 CDS STU288_04805 NC_021151.1 995749 996063 R COG0607 Rhodanese-related sulfurtransferase; thiosulfate:cyanide sulfurtransferase complement(995749..996063) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902061.1 CDS STU288_04810 NC_021151.1 996139 996357 R peripheral inner membrane phage-shock protein complement(996139..996357) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902062.1 CDS STU288_04815 NC_021151.1 996380 996739 R COG1983 Putative stress-responsive transcriptional regulator; DNA-binding transcriptional activator PspC complement(996380..996739) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902063.1 CDS pspB NC_021151.1 996739 996963 R phage shock protein B complement(996739..996963) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902064.1 CDS STU288_04825 NC_021151.1 997023 997691 R COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein PspA complement(997023..997691) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902065.1 CDS pspF NC_021151.1 997862 998842 D COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; phage shock protein operon transcriptional activator 997862..998842 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902066.1 CDS STU288_04835 NC_021151.1 998954 1000603 D COG4166 ABC-type oligopeptide transport system, periplasmic component; antimicrobial peptide ABC transporter periplasmic binding protein SapA 998954..1000603 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902067.1 CDS STU288_04840 NC_021151.1 1000600 1001565 D COG4168 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapB 1000600..1001565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902068.1 CDS STU288_04845 NC_021151.1 1001552 1002442 D COG4171 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapC 1001552..1002442 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902069.1 CDS STU288_04850 NC_021151.1 1002442 1003434 D COG4170 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC transporter ATP-binding protein 1002442..1003434 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902070.1 CDS STU288_04855 NC_021151.1 1003436 1004242 D COG4167 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC system ATP-binding protein SapF 1003436..1004242 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902071.1 CDS STU288_04860 NC_021151.1 1004371 1004967 R COG2200 FOG: EAL domain; hypothetical protein complement(1004371..1004967) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902072.1 CDS STU288_04865 NC_021151.1 1005433 1006410 R hypothetical protein complement(1005433..1006410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902073.1 CDS STU288_04870 NC_021151.1 1007412 1008200 D COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl carrier protein) reductase 1007412..1008200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902074.1 CDS STU288_04875 NC_021151.1 1008400 1009380 D COG4950 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 1008400..1009380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902075.1 CDS STU288_04880 NC_021151.1 1009622 1011556 D COG4776 Exoribonuclease II; exoribonuclease II 1009622..1011556 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902076.1 CDS STU288_04885 NC_021151.1 1011818 1013800 D COG2199 FOG: GGDEF domain; RNase II stability modulator 1011818..1013800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902077.1 CDS STU288_04890 NC_021151.1 1013922 1014101 D hypothetical protein 1013922..1014101 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902078.1 CDS STU288_04895 NC_021151.1 1014188 1014940 D COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 1014188..1014940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902079.1 CDS STU288_04900 NC_021151.1 1015199 1015417 D lipoprotein 1015199..1015417 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902080.1 CDS STU288_04905 NC_021151.1 1015537 1015863 R COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins; translation initiation factor Sui1 complement(1015537..1015863) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902081.1 CDS STU288_04910 NC_021151.1 1015863 1016600 R COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1015863..1016600) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902082.1 CDS STU288_04915 NC_021151.1 1016791 1017960 R COG2956 Predicted N-acetylglucosaminyl transferase; tetratricopeptide repeat protein complement(1016791..1017960) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902083.1 CDS STU288_04920 NC_021151.1 1017967 1018275 R COG3771 Predicted membrane protein; inner membrane protein complement(1017967..1018275) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902084.1 CDS STU288_04925 NC_021151.1 1018425 1019189 R COG0671 Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B complement(1018425..1019189) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902085.1 CDS ribA NC_021151.1 1019385 1019975 D COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 1019385..1019975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902086.1 CDS STU288_04935 NC_021151.1 1020031 1022706 R COG1048 Aconitase A; aconitate hydratase complement(1020031..1022706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902087.1 CDS STU288_04940 NC_021151.1 1023091 1023261 R hypothetical protein complement(1023091..1023261) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902088.1 CDS STU288_04945 NC_021151.1 1023262 1023390 R hypothetical protein complement(1023262..1023390) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902089.1 CDS cysB NC_021151.1 1023683 1024657 R COG0583 Transcriptional regulator; transcriptional regulator CysB complement(1023683..1024657) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902090.1 CDS STU288_04955 NC_021151.1 1025068 1027665 R COG0550 Topoisomerase IA; DNA topoisomerase I subunit omega complement(1025068..1027665) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902091.1 CDS STU288_04960 NC_021151.1 1028068 1028319 D hypothetical protein 1028068..1028319 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902092.1 CDS STU288_04965 NC_021151.1 1028361 1029407 R COG0616 Periplasmic serine proteases (ClpP class); inner membrane peptidase complement(1028361..1029407) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902093.1 CDS STU288_04970 NC_021151.1 1029645 1030406 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxoacyl-(acyl carrier protein) reductase 1029645..1030406 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902094.1 CDS STU288_04975 NC_021151.1 1030403 1030993 D COG2109 ATP:corrinoid adenosyltransferase; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 1030403..1030993 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902095.1 CDS STU288_04980 NC_021151.1 1031080 1031955 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridylate synthase B complement(1031080..1031955) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902096.1 CDS STU288_04985 NC_021151.1 1032056 1032676 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(1032056..1032676) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902097.1 CDS STU288_04990 NC_021151.1 1032684 1033565 R COG0613 Predicted metal-dependent phosphoesterases (PHP family); Protein trpH complement(1032684..1033565) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902098.1 CDS STU288_04995 NC_021151.1 1033826 1035388 D COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 1033826..1035388 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902099.1 CDS STU288_05000 NC_021151.1 1035388 1036983 D COG0512 Anthranilate/para-aminobenzoate synthases component II; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1035388..1036983 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902100.1 CDS STU288_05005 NC_021151.1 1036987 1038345 D COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1036987..1038345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902101.1 CDS STU288_05010 NC_021151.1 1038355 1039548 D COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 1038355..1039548 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902102.1 CDS trpA NC_021151.1 1039548 1040354 D COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1039548..1040354 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902103.1 CDS STU288_05020 NC_021151.1 1041106 1041609 D COG3685 Uncharacterized protein conserved in bacteria; Protein yciF 1041106..1041609 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902104.1 CDS STU288_05025 NC_021151.1 1041683 1042189 D COG3685 Uncharacterized protein conserved in bacteria; Protein yciE 1041683..1042189 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902105.1 CDS STU288_05030 NC_021151.1 1042209 1043087 D COG3546 Mn-containing catalase; Manganese catalase 1042209..1043087 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902106.1 CDS STU288_05035 NC_021151.1 1043169 1043807 R COG3047 Outer membrane protein W; outer membrane protein W complement(1043169..1043807) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902107.1 CDS STU288_05040 NC_021151.1 1044145 1044549 D COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 1044145..1044549 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902108.1 CDS STU288_05045 NC_021151.1 1044575 1045318 D hypothetical protein 1044575..1045318 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902109.1 CDS STU288_05050 NC_021151.1 1045375 1045914 D COG2917 Intracellular septation protein A; intracellular septation protein A 1045375..1045914 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902110.1 CDS STU288_05055 NC_021151.1 1046075 1046476 D COG1607 Acyl-CoA hydrolase; acyl-CoA esterase 1046075..1046476 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902111.1 CDS STU288_05060 NC_021151.1 1046536 1047264 R COG0810 Periplasmic protein TonB, links inner and outer membranes; transport protein TonB complement(1046536..1047264) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902112.1 CDS STU288_05065 NC_021151.1 1047488 1047784 D COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein 1047488..1047784 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902113.1 CDS STU288_05070 NC_021151.1 1047828 1048001 R hypothetical protein complement(1047828..1048001) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902114.1 CDS cls NC_021151.1 1048144 1049604 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase 1048144..1049604 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902115.1 CDS STU288_05080 NC_021151.1 1049638 1049967 D COG3099 Uncharacterized protein conserved in bacteria; dsDNA-mimic protein 1049638..1049967 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902116.1 CDS STU288_05085 NC_021151.1 1050015 1050851 R COG1226 Kef-type K+ transport systems, predicted NAD-binding component; Potassium voltage-gated channel subfamily A member 3 Voltage-gated potassium channel subunit Kv1.3 complement(1050015..1050851) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902117.1 CDS STU288_05090 NC_021151.1 1050899 1051903 R COG4608 ABC-type oligopeptide transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppF complement(1050899..1051903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902118.1 CDS oppD NC_021151.1 1051900 1052907 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide transporter ATP-binding component complement(1051900..1052907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902119.1 CDS STU288_05100 NC_021151.1 1052919 1053827 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease OppC complement(1052919..1053827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902120.1 CDS oppB NC_021151.1 1053842 1054762 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transporter permease complement(1053842..1054762) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902121.1 CDS STU288_05110 NC_021151.1 1054884 1056515 R COG4166 ABC-type oligopeptide transport system, periplasmic component; oligopeptide ABC transporter substrate-binding protein OppA complement(1054884..1056515) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902122.1 CDS STU288_05115 NC_021151.1 1057280 1057927 R COG2095 Multiple antibiotic transporter; hypothetical protein complement(1057280..1057927) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902123.1 CDS STU288_05120 NC_021151.1 1058404 1061082 D COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1058404..1061082 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902124.1 CDS STU288_05125 NC_021151.1 1061279 1061896 R COG1435 Thymidine kinase; thymidine kinase complement(1061279..1061896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902125.1 CDS STU288_05130 NC_021151.1 1062559 1062972 D COG2916 DNA-binding protein H-NS; global DNA-binding transcriptional dual regulator H-NS 1062559..1062972 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902126.1 CDS STU288_05135 NC_021151.1 1063104 1064012 R COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1063104..1064012) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902127.1 CDS STU288_05140 NC_021151.1 1064215 1065228 R COG0784 FOG: CheY-like receiver; response regulator of RpoS complement(1064215..1065228) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902128.1 CDS STU288_05145 NC_021151.1 1065319 1066224 R COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein complement(1065319..1066224) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902129.1 CDS STU288_05150 NC_021151.1 1066335 1066793 D COG3012 Uncharacterized protein conserved in bacteria; hypothetical protein 1066335..1066793 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902130.1 CDS purU NC_021151.1 1066844 1067707 D COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate deformylase 1066844..1067707 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902131.1 CDS STU288_05160 NC_021151.1 1068480 1070009 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1068480..1070009) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902132.1 CDS STU288_05165 NC_021151.1 1070045 1070209 D hypothetical protein 1070045..1070209 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902133.1 CDS narI NC_021151.1 1070251 1070928 R COG2181 Nitrate reductase gamma subunit; nitrate reductase A subunit gamma complement(1070251..1070928) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902134.1 CDS STU288_05175 NC_021151.1 1070928 1071638 R COG2180 Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone NarJ complement(1070928..1071638) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902135.1 CDS narH NC_021151.1 1071635 1073170 R COG1140 Nitrate reductase beta subunit; nitrate reductase A subunit beta complement(1071635..1073170) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902136.1 CDS narG NC_021151.1 1073167 1076910 R COG5013 Nitrate reductase alpha subunit; nitrate reductase A subunit alpha complement(1073167..1076910) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902137.1 CDS STU288_05190 NC_021151.1 1077298 1078695 R COG2223 Nitrate/nitrite transporter; nitrate/nitrite transporter NarK complement(1077298..1078695) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902138.1 CDS STU288_05195 NC_021151.1 1079036 1080832 D COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarX 1079036..1080832 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902139.1 CDS STU288_05200 NC_021151.1 1080825 1081475 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarL 1080825..1081475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902140.1 CDS STU288_05205 NC_021151.1 1081476 1082858 R invasin complement(1081476..1082858) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902141.1 CDS STU288_05210 NC_021151.1 1083077 1083430 D COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; Sulfurtransferase tusD tRNA 2-thiouridine synthesizing protein D 1083077..1083430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902142.1 CDS chaB NC_021151.1 1083510 1083740 R COG4572 Putative cation transport regulator; cation transport regulator complement(1083510..1083740) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902143.1 CDS STU288_05220 NC_021151.1 1084007 1085107 D COG0387 Ca2+/H+ antiporter; calcium/sodium:proton antiporter 1084007..1085107 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902144.1 CDS STU288_05225 NC_021151.1 1085161 1086015 R COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1085161..1086015) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902145.1 CDS STU288_05230 NC_021151.1 1086053 1086862 R COG2912 Uncharacterized conserved protein; hypothetical protein complement(1086053..1086862) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902146.1 CDS STU288_05235 NC_021151.1 1086866 1087255 R COG3094 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1086866..1087255) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902147.1 CDS STU288_05240 NC_021151.1 1087252 1088085 R COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1087252..1088085) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902148.1 CDS prfA NC_021151.1 1088085 1089167 R COG0216 Protein chain release factor A; peptide chain release factor 1 complement(1088085..1089167) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902149.1 CDS hemA NC_021151.1 1089208 1090464 R COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(1089208..1090464) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902150.1 CDS lolB NC_021151.1 1090778 1091401 D COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis; outer membrane lipoprotein LolB 1090778..1091401 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902151.1 CDS ipk NC_021151.1 1091398 1092249 D COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1091398..1092249 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902152.1 CDS STU288_05265 NC_021151.1 1092515 1093462 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 1092515..1093462 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902153.1 CDS STU288_05270 NC_021151.1 1093587 1095272 D COG0659 Sulfate permease and related transporters (MFS superfamily); transporter 1093587..1095272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902154.1 CDS STU288_05275 NC_021151.1 1095317 1095595 R hypothetical protein complement(1095317..1095595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902155.1 CDS STU288_05280 NC_021151.1 1095871 1096455 D COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1095871..1096455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902156.1 CDS STU288_05285 NC_021151.1 1096572 1097663 D COG0012 Predicted GTPase, probable translation factor; GTP-binding protein YchF 1096572..1097663 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902157.1 CDS STU288_05290 NC_021151.1 1097822 1099087 R hypothetical protein complement(1097822..1099087) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902158.1 CDS STU288_05295 NC_021151.1 1099582 1100700 D COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 1, small subunit 1099582..1100700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902159.1 CDS STU288_05300 NC_021151.1 1100697 1102490 D COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 1 large subunit 1100697..1102490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902160.1 CDS STU288_05305 NC_021151.1 1102509 1103240 D COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; hydrogenase 1 b-type cytochrome subunit 1102509..1103240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902161.1 CDS STU288_05310 NC_021151.1 1103237 1103833 D COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 1103237..1103833 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902162.1 CDS STU288_05315 NC_021151.1 1103823 1104227 D COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE 1103823..1104227 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902163.1 CDS STU288_05320 NC_021151.1 1104224 1105072 D hydrogenase-1 operon protein HyaF 1104224..1105072 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902164.1 CDS STU288_05325 NC_021151.1 1105147 1106691 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome bd-II oxidase subunit 1 1105147..1106691 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902165.1 CDS STU288_05330 NC_021151.1 1106703 1107839 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome bd-II oxidase subunit 2 1106703..1107839 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902166.1 CDS STU288_05335 NC_021151.1 1107852 1107941 D hypothetical protein 1107852..1107941 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902167.1 CDS STU288_05340 NC_021151.1 1108336 1109610 D COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1108336..1109610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902168.1 CDS treA NC_021151.1 1109824 1111536 D COG1626 Neutral trehalase; trehalase 1109824..1111536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902169.1 CDS STU288_05350 NC_021151.1 1111599 1111853 R COG2261 Predicted membrane protein; UPF0410 protein ymge Transglycosylase-associated gene protein complement(1111599..1111853) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902170.1 CDS STU288_05355 NC_021151.1 1112022 1112756 D COG5581 Predicted glycosyltransferase; inner membrane protein 1112022..1112756 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902171.1 CDS emtA NC_021151.1 1112770 1113381 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein endotransglycosylase E complement(1112770..1113381) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902172.1 CDS ldcA NC_021151.1 1113552 1114466 D COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; L,D-carboxypeptidase A 1113552..1114466 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902173.1 CDS STU288_05370 NC_021151.1 1114563 1116296 D COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; potassium/proton antiporter 1114563..1116296 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902174.1 CDS dadX NC_021151.1 1116359 1117429 R COG0787 Alanine racemase; alanine racemase complement(1116359..1117429) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902175.1 CDS STU288_05380 NC_021151.1 1117443 1118741 R COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase small subunit complement(1117443..1118741) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902176.1 CDS STU288_05385 NC_021151.1 1119064 1120596 D COG2719 Uncharacterized conserved protein; SpoVR family protein 1119064..1120596 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902177.1 CDS STU288_05390 NC_021151.1 1120643 1121362 R COG2186 Transcriptional regulators; fatty acid metabolism regulator complement(1120643..1121362) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902178.1 CDS nhaB NC_021151.1 1121582 1123126 D COG3067 Na+/H+ antiporter; sodium/proton antiporter 1121582..1123126 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902179.1 CDS STU288_05400 NC_021151.1 1123268 1123798 D COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein B 1123268..1123798 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902180.1 CDS STU288_05405 NC_021151.1 1123907 1124248 D COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; hypothetical protein 1123907..1124248 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902181.1 CDS STU288_05410 NC_021151.1 1124320 1124493 R Protein gnsA complement(1124320..1124493) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902182.1 CDS STU288_05415 NC_021151.1 1124866 1124964 R hypothetical protein complement(1124866..1124964) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902183.1 CDS STU288_05420 NC_021151.1 1125174 1125620 R COG2983 Uncharacterized conserved protein; hypothetical protein complement(1125174..1125620) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902184.1 CDS STU288_05425 NC_021151.1 1125713 1126372 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); hypothetical protein complement(1125713..1126372) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902185.1 CDS STU288_05430 NC_021151.1 1126422 1126715 R COG3100 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1126422..1126715) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902186.1 CDS minC NC_021151.1 1126841 1127548 D COG0850 Septum formation inhibitor; septum formation inhibitor 1126841..1127548 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902187.1 CDS STU288_05440 NC_021151.1 1127572 1128384 D COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor MinD 1127572..1128384 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902188.1 CDS minE NC_021151.1 1128388 1128654 D COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 1128388..1128654 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902189.1 CDS STU288_05450 NC_021151.1 1128776 1129903 R COG0349 Ribonuclease D; ribonuclease D complement(1128776..1129903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902190.1 CDS STU288_05455 NC_021151.1 1129976 1131661 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; long-chain-fatty-acid--CoA ligase complement(1129976..1131661) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902191.1 CDS STU288_05460 NC_021151.1 1131866 1132447 R COG3065 Starvation-inducible outer membrane lipoprotein; lipoprotein complement(1131866..1132447) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902192.1 CDS STU288_05465 NC_021151.1 1132519 1133214 R COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; putative O-sialoglycoprotein endopeptidase Glycoprotease complement(1132519..1133214) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902193.1 CDS STU288_05470 NC_021151.1 1133272 1135182 R COG1199 Rad3-related DNA helicases; DinG family ATP-dependent helicase YoaA complement(1133272..1135182) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902194.1 CDS STU288_05475 NC_021151.1 1135313 1135657 D COG0251 Putative translation initiation inhibitor, yjgF family; UPF0076 protein yabJ 1135313..1135657 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902195.1 CDS STU288_05480 NC_021151.1 1135663 1135842 R COG3140 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1135663..1135842) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902196.1 CDS pabB NC_021151.1 1135926 1137287 D COG0147 Anthranilate/para-aminobenzoate synthases component I; aminodeoxychorismate synthase subunit I 1135926..1137287 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902197.1 CDS STU288_05490 NC_021151.1 1137291 1137869 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 1137291..1137869 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902198.1 CDS STU288_05495 NC_021151.1 1138133 1139497 D COG1760 L-serine deaminase; L-serine deaminase 1138133..1139497 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902199.1 CDS STU288_05500 NC_021151.1 1139635 1141236 D COG2200 FOG: EAL domain; hypothetical protein 1139635..1141236 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902200.1 CDS STU288_05505 NC_021151.1 1141258 1142817 R COG0861 Membrane protein TerC, possibly involved in tellurium resistance; UPF0053 protein complement(1141258..1142817) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902201.1 CDS STU288_05510 NC_021151.1 1143290 1144258 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system mannose-specific transporter subunits IIAB 1143290..1144258 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902202.1 CDS STU288_05515 NC_021151.1 1144311 1145111 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 1144311..1145111 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902203.1 CDS STU288_05520 NC_021151.1 1145115 1145975 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 1145115..1145975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902204.1 CDS STU288_05525 NC_021151.1 1146033 1146503 D COG4811 Predicted membrane protein; hypothetical protein 1146033..1146503 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902205.1 CDS STU288_05530 NC_021151.1 1146901 1147467 D COG1971 Predicted membrane protein; hypothetical protein 1146901..1147467 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902206.1 CDS rrmA NC_021151.1 1147464 1148273 R COG0500 SAM-dependent methyltransferases; 23S rRNA methyltransferase A complement(1147464..1148273) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902207.1 CDS STU288_05540 NC_021151.1 1148339 1150084 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein complement(1148339..1150084) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902208.1 CDS STU288_05545 NC_021151.1 1150304 1150513 R COG1278 Cold shock proteins; Cold shock-like protein cspC complement(1150304..1150513) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902209.1 CDS STU288_05550 NC_021151.1 1150526 1150669 R putative cytoplasmic protein complement(1150526..1150669) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902210.1 CDS STU288_05555 NC_021151.1 1151318 1151605 R hypothetical protein complement(1151318..1151605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902211.1 CDS STU288_05560 NC_021151.1 1151676 1151819 R PhoPQ regulatory protein complement(1151676..1151819) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902212.1 CDS STU288_05565 NC_021151.1 1151977 1152216 D hypothetical protein 1151977..1152216 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902213.1 CDS STU288_05570 NC_021151.1 1152312 1152413 R hypothetical protein complement(1152312..1152413) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902214.1 CDS STU288_05575 NC_021151.1 1152428 1153219 R COG1414 Transcriptional regulator; DNA-binding transcriptional regulator KdgR complement(1152428..1153219) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902215.1 CDS STU288_05580 NC_021151.1 1153395 1154768 D COG0477 Permeases of the major facilitator superfamily; putative transport protein 1153395..1154768 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902216.1 CDS STU288_05585 NC_021151.1 1154816 1155697 R COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX complement(1154816..1155697) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902217.1 CDS STU288_05590 NC_021151.1 1155890 1157938 R COG0793 Periplasmic protease; carboxy-terminal protease complement(1155890..1157938) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902218.1 CDS STU288_05595 NC_021151.1 1157958 1158644 R COG3109 Activator of osmoprotectant transporter ProP; ProP expression regulator complement(1157958..1158644) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902219.1 CDS STU288_05600 NC_021151.1 1158742 1159239 R COG1956 GAF domain-containing protein; putative nucleotide-binding protein complement(1158742..1159239) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902220.1 CDS STU288_05605 NC_021151.1 1159368 1160651 D COG2995 Uncharacterized paraquat-inducible protein A; integral membrane protein PqiA family 1159368..1160651 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902221.1 CDS STU288_05610 NC_021151.1 1160620 1163253 D COG3008 Paraquat-inducible protein B; mce-like protein 1160620..1163253 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902222.1 CDS yebU NC_021151.1 1163229 1164821 D COG0144 tRNA and rRNA cytosine-C5-methylases; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1163229..1164821 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902223.1 CDS STU288_05620 NC_021151.1 1164885 1165124 D hypothetical protein 1164885..1165124 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902224.1 CDS STU288_05625 NC_021151.1 1165235 1165426 D putative inner membrane lipoprotein 1165235..1165426 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902225.1 CDS pphA NC_021151.1 1165445 1166095 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 1 complement(1165445..1166095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902226.1 CDS STU288_05635 NC_021151.1 1166082 1166198 R hypothetical protein complement(1166082..1166198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902227.1 CDS STU288_05640 NC_021151.1 1166319 1166483 R hypothetical protein complement(1166319..1166483) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902228.1 CDS STU288_05645 NC_021151.1 1166768 1167490 R COG0481 Membrane GTPase LepA; type III secretion protein SopE2 complement(1166768..1167490) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902229.1 CDS STU288_05650 NC_021151.1 1168174 1168569 D COG5562 Phage envelope protein; hypothetical protein 1168174..1168569 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902230.1 CDS STU288_05655 NC_021151.1 1168899 1169375 D hypothetical protein 1168899..1169375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902231.1 CDS STU288_05660 NC_021151.1 1169763 1170182 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(1169763..1170182) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902232.1 CDS STU288_05665 NC_021151.1 1170728 1170874 D hypothetical protein 1170728..1170874 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902233.1 CDS STU288_05670 NC_021151.1 1171273 1171350 R transposase complement(1171273..1171350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902234.1 CDS STU288_05675 NC_021151.1 1171464 1171610 R COG3328 Transposase and inactivated derivatives; transposase complement(1171464..1171610) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902235.1 CDS STU288_05680 NC_021151.1 1171610 1172467 R COG3328 Transposase and inactivated derivatives; hypothetical protein complement(1171610..1172467) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902236.1 CDS STU288_05685 NC_021151.1 1172591 1172959 D COG0582 Integrase; hypothetical protein 1172591..1172959 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902237.1 CDS STU288_05690 NC_021151.1 1173445 1173663 R hypothetical protein complement(1173445..1173663) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902238.1 CDS STU288_05695 NC_021151.1 1174263 1175177 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite transporter permease 1174263..1175177 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902239.1 CDS STU288_05700 NC_021151.1 1175310 1175468 D hypothetical protein 1175310..1175468 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902240.1 CDS STU288_05705 NC_021151.1 1175478 1176092 D COG1495 Disulfide bond formation protein DsbB; hypothetical protein 1175478..1176092 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902241.1 CDS STU288_05710 NC_021151.1 1177240 1177365 R COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; arsenical pump membrane protein complement(1177240..1177365) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902242.1 CDS STU288_05715 NC_021151.1 1177264 1177422 D hypothetical protein 1177264..1177422 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902243.1 CDS STU288_05720 NC_021151.1 1177628 1177744 D tail fiber assembly protein 1177628..1177744 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902244.1 CDS STU288_05725 NC_021151.1 1178232 1179113 R COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Phage Tail Assembly Protein complement(1178232..1179113) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902245.1 CDS STU288_05730 NC_021151.1 1179268 1179531 R hypothetical protein complement(1179268..1179531) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902246.1 CDS STU288_05735 NC_021151.1 1179839 1180006 D hypothetical protein 1179839..1180006 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902247.1 CDS STU288_05740 NC_021151.1 1180263 1180796 R exported bacteriophage protein complement(1180263..1180796) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902248.1 CDS STU288_05745 NC_021151.1 1180850 1181080 R COG3179 Predicted chitinase; lytic enzyme complement(1180850..1181080) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902249.1 CDS STU288_05750 NC_021151.1 1181111 1181764 D bacteriophage encoded Exodeoxyribonuclease VIII 1181111..1181764 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902250.1 CDS STU288_05755 NC_021151.1 1182310 1182678 D COG0582 Integrase; integrase 1182310..1182678 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902251.1 CDS STU288_05760 NC_021151.1 1183052 1183405 R hypothetical protein complement(1183052..1183405) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902252.1 CDS STU288_05765 NC_021151.1 1183422 1184294 R COG1276 Putative copper export protein; cation transporter complement(1183422..1184294) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902253.1 CDS STU288_05770 NC_021151.1 1184298 1184672 R COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; hypothetical protein complement(1184298..1184672) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902254.1 CDS STU288_05775 NC_021151.1 1184810 1185040 D DNA polymerase III subunit theta 1184810..1185040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902255.1 CDS STU288_05780 NC_021151.1 1185148 1185804 D COG0388 Predicted amidohydrolase; carbon-nitrogen family hydrolase 1185148..1185804 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902256.1 CDS STU288_05785 NC_021151.1 1185828 1186526 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; exodeoxyribonuclease X 1185828..1186526 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902257.1 CDS STU288_05790 NC_021151.1 1186561 1188612 R COG1770 Protease II; protease 2 complement(1186561..1188612) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902258.1 CDS STU288_05795 NC_021151.1 1188825 1189484 R COG2979 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1188825..1189484) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902259.1 CDS STU288_05800 NC_021151.1 1189578 1189931 R hypothetical protein complement(1189578..1189931) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902260.1 CDS STU288_05805 NC_021151.1 1189999 1190289 R COG3141 Uncharacterized protein conserved in bacteria; DNA damage-inducible protein YebG complement(1189999..1190289) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902261.1 CDS purT NC_021151.1 1190420 1191598 D COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); phosphoribosylglycinamide formyltransferase 2 1190420..1191598 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902262.1 CDS STU288_05815 NC_021151.1 1191598 1191693 D hypothetical protein 1191598..1191693 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902263.1 CDS STU288_05820 NC_021151.1 1191698 1192339 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1191698..1192339) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902264.1 CDS STU288_05825 NC_021151.1 1192377 1194188 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase complement(1192377..1194188) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902265.1 CDS STU288_05830 NC_021151.1 1194423 1195898 R COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1194423..1195898) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902266.1 CDS STU288_05835 NC_021151.1 1196240 1197109 D COG1737 Transcriptional regulators; DNA-binding transcriptional regulator HexR 1196240..1197109 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902267.1 CDS STU288_05840 NC_021151.1 1197233 1198675 D COG0469 Pyruvate kinase; pyruvate kinase 1197233..1198675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902268.1 CDS STU288_05845 NC_021151.1 1198748 1199719 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1198748..1199719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902269.1 CDS STU288_05850 NC_021151.1 1199718 1199945 D COG0127 Xanthosine triphosphate pyrophosphatase; hypothetical protein 1199718..1199945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902270.1 CDS STU288_05855 NC_021151.1 1199836 1201155 R COG0739 Membrane proteins related to metalloendopeptidases; peptidase complement(1199836..1201155) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902271.1 CDS znuA NC_021151.1 1201171 1202115 R COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; high-affinity zinc transporter periplasmic component complement(1201171..1202115) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902272.1 CDS znuC NC_021151.1 1202194 1202949 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; high-affinity zinc transporter ATPase 1202194..1202949 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902273.1 CDS znuB NC_021151.1 1202946 1203731 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; high-affinity zinc transporter membrane component 1202946..1203731 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902274.1 CDS ruvB NC_021151.1 1203810 1204820 R COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB complement(1203810..1204820) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902275.1 CDS ruvA NC_021151.1 1204829 1205440 R COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA complement(1204829..1205440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902276.1 CDS STU288_05885 NC_021151.1 1205615 1205740 R hypothetical protein complement(1205615..1205740) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902277.1 CDS STU288_05890 NC_021151.1 1205860 1206756 D putative cytoplasmic protein 1205860..1206756 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902278.1 CDS STU288_05895 NC_021151.1 1207383 1207982 D hypothetical protein 1207383..1207982 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902279.1 CDS ruvC NC_021151.1 1207984 1208505 R COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase complement(1207984..1208505) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902280.1 CDS STU288_05905 NC_021151.1 1208542 1209282 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(1208542..1209282) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902281.1 CDS nudB NC_021151.1 1209312 1209764 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dihydroneopterin triphosphate pyrophosphatase complement(1209312..1209764) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902282.1 CDS aspS NC_021151.1 1209867 1211639 R COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA ligase complement(1209867..1211639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902283.1 CDS STU288_05920 NC_021151.1 1211964 1212530 D COG1335 Amidases related to nicotinamidase; hydrolase 1211964..1212530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902284.1 CDS STU288_05925 NC_021151.1 1212527 1213345 D COG1801 Uncharacterized conserved protein; hypothetical protein 1212527..1213345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902285.1 CDS STU288_05930 NC_021151.1 1213398 1213793 D COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily; Inner membrane protein yecN 1213398..1213793 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902286.1 CDS STU288_05935 NC_021151.1 1213834 1214577 D COG0500 SAM-dependent methyltransferases; tRNA (cmo5U34)-methyltransferase 1213834..1214577 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902287.1 CDS STU288_05940 NC_021151.1 1214574 1215545 D COG0500 SAM-dependent methyltransferases; tRNA mo(5)U34 methyltransferase 1214574..1215545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902288.1 CDS STU288_05945 NC_021151.1 1215781 1216527 R COG3142 Uncharacterized protein involved in copper resistance; copper homeostasis protein CutC complement(1215781..1216527) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902289.1 CDS STU288_05950 NC_021151.1 1216547 1217116 R COG3102 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1216547..1217116) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902290.1 CDS argS NC_021151.1 1217353 1219086 D COG0018 Arginyl-tRNA synthetase; arginyl-tRNA ligase 1217353..1219086 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902291.1 CDS STU288_05960 NC_021151.1 1219275 1221146 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 1219275..1221146 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902292.1 CDS STU288_05965 NC_021151.1 1221200 1222339 R COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins; putative glycosyl hydrolase yteR complement(1221200..1222339) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902293.1 CDS STU288_05970 NC_021151.1 1222576 1222968 R flagellar protein FlhE complement(1222576..1222968) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902294.1 CDS flhA NC_021151.1 1222968 1225046 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(1222968..1225046) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902295.1 CDS flhB NC_021151.1 1225039 1226190 R COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB complement(1225039..1226190) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902296.1 CDS STU288_05985 NC_021151.1 1226384 1227028 R COG3143 Chemotaxis protein; chemotaxis regulator CheZ complement(1226384..1227028) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902297.1 CDS STU288_05990 NC_021151.1 1227039 1227428 R COG0784 FOG: CheY-like receiver; chemotaxis regulatory protein CheY complement(1227039..1227428) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902298.1 CDS STU288_05995 NC_021151.1 1227446 1228495 R COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; chemotaxis-specific protein-glutamate methyltransferase complement(1227446..1228495) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902299.1 CDS STU288_06000 NC_021151.1 1228492 1229358 R COG1352 Methylase of chemotaxis methyl-accepting proteins; chemotaxis methyltransferase CheR complement(1228492..1229358) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902300.1 CDS STU288_06005 NC_021151.1 1229512 1231173 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein II complement(1229512..1231173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902301.1 CDS STU288_06010 NC_021151.1 1231410 1231913 R COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein complement(1231410..1231913) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902302.1 CDS STU288_06015 NC_021151.1 1231999 1233945 R COG0643 Chemotaxis protein histidine kinase and related kinases; chemotaxis protein CheA complement(1231999..1233945) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902303.1 CDS motB NC_021151.1 1233956 1234885 R COG1360 Flagellar motor protein; flagellar motor protein MotB complement(1233956..1234885) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902304.1 CDS STU288_06025 NC_021151.1 1234882 1235769 R COG1291 Flagellar motor component; flagellar motor protein MotA complement(1234882..1235769) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902305.1 CDS STU288_06030 NC_021151.1 1235894 1236472 R transcriptional activator FlhC complement(1235894..1236472) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902306.1 CDS STU288_06035 NC_021151.1 1236475 1236816 R transcriptional activator FlhD complement(1236475..1236816) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902307.1 CDS STU288_06040 NC_021151.1 1237612 1238040 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspC 1237612..1238040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902308.1 CDS STU288_06045 NC_021151.1 1238058 1239479 R COG0380 Trehalose-6-phosphate synthase; trehalose-6-phosphate synthase complement(1238058..1239479) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902309.1 CDS STU288_06050 NC_021151.1 1239454 1240257 R COG1877 Trehalose-6-phosphatase; trehalose-6-phosphate phosphatase complement(1239454..1240257) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902310.1 CDS STU288_06055 NC_021151.1 1240890 1241447 R COG0693 Putative intracellular protease/amidase; hypothetical protein complement(1240890..1241447) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902311.1 CDS STU288_06060 NC_021151.1 1241702 1241797 R hypothetical protein complement(1241702..1241797) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902312.1 CDS STU288_06065 NC_021151.1 1241998 1242501 D COG1528 Ferritin-like protein; ferritin-like protein 1241998..1242501 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902313.1 CDS STU288_06070 NC_021151.1 1242680 1243318 R COG0698 Ribose 5-phosphate isomerase RpiB; hypothetical protein complement(1242680..1243318) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902314.1 CDS STU288_06075 NC_021151.1 1243574 1243909 D hypothetical protein 1243574..1243909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902315.1 CDS STU288_06080 NC_021151.1 1244149 1244646 D COG1528 Ferritin-like protein; ferritin 1244149..1244646 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902316.1 CDS STU288_06085 NC_021151.1 1244692 1244931 R hypothetical protein complement(1244692..1244931) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902317.1 CDS STU288_06090 NC_021151.1 1245158 1246369 D COG0814 Amino acid permeases; tyrosine transporter TyrP 1245158..1246369 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902318.1 CDS STU288_06095 NC_021151.1 1246444 1247109 R COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; hypothetical protein complement(1246444..1247109) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902319.1 CDS STU288_06100 NC_021151.1 1247347 1247673 R hypothetical protein complement(1247347..1247673) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902320.1 CDS STU288_06105 NC_021151.1 1247886 1249319 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein complement(1247886..1249319) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902321.1 CDS STU288_06110 NC_021151.1 1249538 1249870 R putative inner membrane protein complement(1249538..1249870) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902322.1 CDS STU288_06115 NC_021151.1 1250571 1251119 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthetase complement(1250571..1251119) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902323.1 CDS uvrC NC_021151.1 1251176 1253008 R COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C complement(1251176..1253008) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902324.1 CDS STU288_06125 NC_021151.1 1253005 1253661 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator complement(1253005..1253661) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902325.1 CDS STU288_06130 NC_021151.1 1253973 1254128 D putative inner membrane protein 1253973..1254128 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902326.1 CDS STU288_06135 NC_021151.1 1254125 1254349 D hypothetical protein 1254125..1254349 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902327.1 CDS STU288_06140 NC_021151.1 1254416 1255138 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional activator SdiA complement(1254416..1255138) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902328.1 CDS STU288_06145 NC_021151.1 1255370 1256122 R COG1126 ABC-type polar amino acid transport system, ATPase component; amino-acid ABC transporter ATP-binding protein YecC complement(1255370..1256122) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902329.1 CDS STU288_06150 NC_021151.1 1256119 1256787 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(1256119..1256787) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902330.1 CDS STU288_06155 NC_021151.1 1256808 1257794 R COG2515 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase complement(1256808..1257794) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902331.1 CDS STU288_06160 NC_021151.1 1257948 1258748 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; cystine transporter subunit complement(1257948..1258748) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902332.1 CDS STU288_06165 NC_021151.1 1258895 1259446 R flagella biosynthesis protein FliZ complement(1258895..1259446) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902333.1 CDS fliA NC_021151.1 1259505 1260224 R COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor complement(1259505..1260224) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902334.1 CDS STU288_06175 NC_021151.1 1260493 1260951 R COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 complement(1260493..1260951) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902335.1 CDS STU288_06180 NC_021151.1 1261132 1262337 R lysine-N-methylase complement(1261132..1262337) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902336.1 CDS STU288_06185 NC_021151.1 1262416 1263903 R COG1344 Flagellin and related hook-associated proteins; flagellin complement(1262416..1263903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902337.1 CDS fliD NC_021151.1 1264160 1265563 D COG1345 Flagellar capping protein; flagellar capping protein 1264160..1265563 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902338.1 CDS fliS NC_021151.1 1265578 1265985 D COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 1265578..1265985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902339.1 CDS STU288_06200 NC_021151.1 1265985 1266353 D flagellar biosynthesis protein FliT 1265985..1266353 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902340.1 CDS STU288_06205 NC_021151.1 1266425 1267909 D COG0366 Glycosidases; cytoplasmic alpha-amylase 1266425..1267909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902341.1 CDS STU288_06210 NC_021151.1 1267949 1268374 R lipoprotein complement(1267949..1268374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902342.1 CDS STU288_06215 NC_021151.1 1268560 1269765 D COG2391 Predicted transporter component; hypothetical protein 1268560..1269765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902343.1 CDS STU288_06220 NC_021151.1 1269762 1269995 D COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 1269762..1269995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902344.1 CDS STU288_06225 NC_021151.1 1270293 1270646 D hypothetical protein 1270293..1270646 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902345.1 CDS fliE NC_021151.1 1270766 1271080 R COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE complement(1270766..1271080) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902346.1 CDS fliF NC_021151.1 1271297 1272979 D COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 1271297..1272979 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902347.1 CDS fliG NC_021151.1 1272972 1273967 D COG1536 Flagellar motor switch protein; flagellar motor switch protein G 1272972..1273967 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902348.1 CDS fliH NC_021151.1 1273960 1274667 D COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 1273960..1274667 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902349.1 CDS fliI NC_021151.1 1274667 1276037 D COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 1274667..1276037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902350.1 CDS fliJ NC_021151.1 1276059 1276502 D COG2882 Flagellar biosynthesis chaperone; flagellar biosynthesis chaperone 1276059..1276502 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902351.1 CDS STU288_06260 NC_021151.1 1276499 1277716 D COG3144 Flagellar hook-length control protein; flagellar hook-length control protein 1276499..1277716 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902352.1 CDS fliL NC_021151.1 1277821 1278288 D COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 1277821..1278288 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902353.1 CDS fliM NC_021151.1 1278293 1279297 D COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 1278293..1279297 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902354.1 CDS fliN NC_021151.1 1279294 1279707 D COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 1279294..1279707 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902355.1 CDS STU288_06280 NC_021151.1 1279710 1280084 D COG3190 Flagellar biogenesis protein; flagellar biosynthesis protein FliO 1279710..1280084 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902356.1 CDS fliP NC_021151.1 1280084 1280821 D COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 1280084..1280821 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902357.1 CDS fliQ NC_021151.1 1280831 1281100 D COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 1280831..1281100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902358.1 CDS fliR NC_021151.1 1281109 1281903 D COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 1281109..1281903 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902359.1 CDS rcsA NC_021151.1 1282185 1282808 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; colanic acid capsular biosynthesis activation protein A 1282185..1282808 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902360.1 CDS STU288_06305 NC_021151.1 1282847 1283041 R hypothetical protein complement(1282847..1283041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902361.1 CDS STU288_06310 NC_021151.1 1283170 1283397 D hypothetical protein 1283170..1283397 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902362.1 CDS STU288_06315 NC_021151.1 1283707 1284522 D COG3769 Predicted hydrolase (HAD superfamily); mannosyl-3-phosphoglycerate phosphatase 1283707..1284522 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902363.1 CDS STU288_06320 NC_021151.1 1284501 1286213 R COG2199 FOG: GGDEF domain; diguanylate cyclase YedQ complement(1284501..1286213) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902364.1 CDS STU288_06325 NC_021151.1 1286378 1286563 R COG5475 Uncharacterized small protein; hypothetical protein complement(1286378..1286563) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902365.1 CDS STU288_06330 NC_021151.1 1286640 1287551 R COG2354 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1286640..1287551) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902366.1 CDS STU288_06335 NC_021151.1 1287727 1288647 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; DMT superfamily transporter inner membrane protein 1287727..1288647 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902367.1 CDS STU288_06340 NC_021151.1 1288636 1289106 R COG3727 DNA G:T-mismatch repair endonuclease; very short patch repair endonuclease complement(1288636..1289106) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902368.1 CDS STU288_06345 NC_021151.1 1289087 1290517 R COG0270 Site-specific DNA methylase; DNA cytosine methylase complement(1289087..1290517) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902369.1 CDS STU288_06350 NC_021151.1 1290591 1291286 R COG1418 Predicted HD superfamily hydrolase; hydrolase complement(1290591..1291286) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902370.1 CDS STU288_06355 NC_021151.1 1291378 1291677 R putative inner membrane protein complement(1291378..1291677) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902371.1 CDS STU288_06360 NC_021151.1 1291753 1291884 D hypothetical protein 1291753..1291884 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902372.1 CDS STU288_06365 NC_021151.1 1292327 1293523 D COG3203 Outer membrane protein (porin); outer membrane protein S1 1292327..1293523 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902373.1 CDS STU288_06370 NC_021151.1 1293983 1294195 R COG1278 Cold shock proteins; cold shock protein complement(1293983..1294195) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902374.1 CDS umuC NC_021151.1 1294650 1295918 R COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC complement(1294650..1295918) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902375.1 CDS STU288_06380 NC_021151.1 1295921 1296340 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD complement(1295921..1296340) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902376.1 CDS STU288_06385 NC_021151.1 1296467 1296628 R hypothetical protein complement(1296467..1296628) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902377.1 CDS STU288_06390 NC_021151.1 1297109 1297906 D COG3228 Uncharacterized protein conserved in bacteria; DgsA anti-repressor MtfA 1297109..1297906 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902378.1 CDS STU288_06395 NC_021151.1 1298196 1298366 D COG0582 Integrase; hypothetical protein 1298196..1298366 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902379.1 CDS STU288_06400 NC_021151.1 1298278 1298568 D COG0582 Integrase; hypothetical protein 1298278..1298568 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902380.1 CDS STU288_06405 NC_021151.1 1298575 1298679 R hypothetical protein complement(1298575..1298679) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902381.1 CDS STU288_06410 NC_021151.1 1299216 1299689 D Putative protease 1299216..1299689 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902382.1 CDS STU288_06415 NC_021151.1 1300164 1300862 D COG0582 Integrase; putative branched chain amino acid transport protein 1300164..1300862 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902383.1 CDS STU288_06420 NC_021151.1 1300747 1300995 D COG3335 Transposase and inactivated derivatives; transposase 1300747..1300995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902384.1 CDS STU288_06425 NC_021151.1 1301205 1303373 D COG2849 Uncharacterized protein conserved in bacteria; tetratricopeptide repeat protein 1301205..1303373 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902385.1 CDS STU288_06430 NC_021151.1 1303430 1305160 D hypothetical protein 1303430..1305160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902386.1 CDS STU288_06435 NC_021151.1 1305218 1305322 R COG1666 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1305218..1305322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902387.1 CDS STU288_06440 NC_021151.1 1305370 1305543 D hypothetical protein 1305370..1305543 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902388.1 CDS STU288_06445 NC_021151.1 1305635 1305784 D hypothetical protein 1305635..1305784 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902389.1 CDS STU288_06450 NC_021151.1 1306065 1307519 R COG0775 Nucleoside phosphorylase; AMP nucleosidase complement(1306065..1307519) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902390.1 CDS STU288_06455 NC_021151.1 1307715 1308041 R putative cytoplasmic protein complement(1307715..1308041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902391.1 CDS STU288_06460 NC_021151.1 1309135 1310592 R COG0534 Na+-driven multidrug efflux pump; MATE family multidrug exporter complement(1309135..1310592) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902392.1 CDS STU288_06465 NC_021151.1 1311054 1311983 R COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase complement(1311054..1311983) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902393.1 CDS cobT NC_021151.1 1312061 1313131 R COG2038 NaMN:DMB phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(1312061..1313131) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902394.1 CDS cobS NC_021151.1 1313158 1313901 R COG0368 Cobalamin-5-phosphate synthase; cobalamin synthase complement(1313158..1313901) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902395.1 CDS cobU NC_021151.1 1313898 1314443 R COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(1313898..1314443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902396.1 CDS STU288_06485 NC_021151.1 1314440 1315960 R COG1492 Cobyric acid synthase; cobyric acid synthase complement(1314440..1315960) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902397.1 CDS cbiO NC_021151.1 1315957 1316772 R COG1122 ABC-type cobalt transport system, ATPase component; cobalt transporter ATP-binding subunit complement(1315957..1316772) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902398.1 CDS STU288_06495 NC_021151.1 1316781 1317458 R COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport protein CbiQ complement(1316781..1317458) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902399.1 CDS STU288_06500 NC_021151.1 1317445 1317726 R COG1930 ABC-type cobalt transport system, periplasmic component; cobalt transport protein CbiN complement(1317445..1317726) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902400.1 CDS STU288_06505 NC_021151.1 1317728 1318465 R COG0310 ABC-type Co2+ transport system, permease component; cobalt transport protein CbiM complement(1317728..1318465) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902401.1 CDS STU288_06510 NC_021151.1 1318462 1319175 R COG2243 Precorrin-2 methylase; cobalt-precorrin-2 C(20)-methyltransferase complement(1318462..1319175) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902402.1 CDS STU288_06515 NC_021151.1 1319172 1319966 R COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase; synthesis of vitamin B12 adenosyl cobalamide precursor complement(1319172..1319966) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902403.1 CDS STU288_06520 NC_021151.1 1319969 1320760 R COG2099 Precorrin-6x reductase; cobalt-precorrin-6x reductase complement(1319969..1320760) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902404.1 CDS cbiH NC_021151.1 1320757 1321482 R COG1010 Precorrin-3B methylase; cobalt-precorrin-3B C(17)-methyltransferase complement(1320757..1321482) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902405.1 CDS STU288_06530 NC_021151.1 1321482 1322537 R COG2073 Cobalamin biosynthesis protein CbiG; cobalamin biosynthesis protein CbiG complement(1321482..1322537) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902406.1 CDS cbiF NC_021151.1 1322518 1323291 R COG2875 Precorrin-4 methylase; cobalt-precorrin-4 C(11)-methyltransferase complement(1322518..1323291) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902407.1 CDS STU288_06540 NC_021151.1 1323275 1323853 R COG2242 Precorrin-6B methylase 2; cobalt-precorrin-6Y C(15)-methyltransferase complement(1323275..1323853) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902408.1 CDS STU288_06545 NC_021151.1 1323843 1324448 R COG2241 Precorrin-6B methylase 1; cobalt-precorrin-6Y C(5)-methyltransferase complement(1323843..1324448) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902409.1 CDS cbiD NC_021151.1 1324442 1325581 R COG1903 Cobalamin biosynthesis protein CbiD; cobalt-precorrin-6A synthase complement(1324442..1325581) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902410.1 CDS cbiC NC_021151.1 1325581 1326213 R COG2082 Precorrin isomerase; cobalt-precorrin-8X methylmutase complement(1325581..1326213) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902411.1 CDS STU288_06560 NC_021151.1 1326224 1327183 R COG1270 Cobalamin biosynthesis protein CobD/CbiB; cobalamin biosynthesis protein complement(1326224..1327183) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902412.1 CDS STU288_06565 NC_021151.1 1327180 1328559 R COG1797 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(1327180..1328559) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902413.1 CDS STU288_06570 NC_021151.1 1329157 1330068 R COG4936 Predicted sensor domain; Regulatory protein pocR complement(1329157..1330068) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902414.1 CDS STU288_06575 NC_021151.1 1330285 1331079 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); propanediol utilization propanediol diffusion facilitator complement(1330285..1331079) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902415.1 CDS STU288_06580 NC_021151.1 1331604 1331888 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; hypothetical protein 1331604..1331888 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902416.1 CDS STU288_06585 NC_021151.1 1331885 1332697 D COG4816 Ethanolamine utilization protein; propanediol utilization protein PduB 1331885..1332697 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902417.1 CDS pduC NC_021151.1 1332716 1334380 D COG4909 Propanediol dehydratase, large subunit; propanediol dehydratase large subunit 1332716..1334380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902418.1 CDS pduD NC_021151.1 1334391 1335065 D COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; propanediol dehydratase medium subunit 1334391..1335065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902419.1 CDS pduE NC_021151.1 1335080 1335601 D COG4910 Propanediol dehydratase, small subunit; propanediol dehydratase small subunit 1335080..1335601 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902420.1 CDS STU288_06605 NC_021151.1 1335611 1337443 D propanediol utilization protein 1335611..1337443 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902421.1 CDS STU288_06610 NC_021151.1 1337433 1337783 D propanediol utilization protein 1337433..1337783 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902422.1 CDS STU288_06615 NC_021151.1 1337802 1338077 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; hypothetical protein 1337802..1338077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902423.1 CDS STU288_06620 NC_021151.1 1338102 1338563 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; polyhedral body protein 1338102..1338563 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902424.1 CDS STU288_06625 NC_021151.1 1338563 1339195 D COG4869 Propanediol utilization protein; propanediol utilization phosphotransacylase 1338563..1339195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902425.1 CDS STU288_06630 NC_021151.1 1339192 1339683 D propanediol utilization protein PduM 1339192..1339683 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902426.1 CDS STU288_06635 NC_021151.1 1339687 1339962 D COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; Propanediol utilization polyhedral body protein PduN 1339687..1339962 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902427.1 CDS STU288_06640 NC_021151.1 1339972 1340982 D COG2096 Uncharacterized conserved protein; ATP:Cob(I)alamin adenosyltransferase 1339972..1340982 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902428.1 CDS STU288_06645 NC_021151.1 1340979 1342373 D COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE 1340979..1342373 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902429.1 CDS STU288_06650 NC_021151.1 1342385 1343497 D COG1454 Alcohol dehydrogenase, class IV; propanol dehydrogenase 1342385..1343497 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902430.1 CDS STU288_06655 NC_021151.1 1343494 1344849 D COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; Cob(III)alamin reductase @ Cob(II)alamin reductase 1343494..1344849 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902431.1 CDS STU288_06660 NC_021151.1 1344852 1345406 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; Propanediol utilization polyhedral body protein PduT 1344852..1345406 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902432.1 CDS STU288_06665 NC_021151.1 1345406 1345756 D COG4810 Ethanolamine utilization protein; propanediol utilization polyhedral body protein PduU 1345406..1345756 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902433.1 CDS STU288_06670 NC_021151.1 1345761 1346213 D COG4917 Ethanolamine utilization protein; propanediol utilization protein PduV 1345761..1346213 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902434.1 CDS STU288_06675 NC_021151.1 1346198 1347412 D COG0282 Acetate kinase; propionate kinase 1346198..1347412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902435.1 CDS STU288_06680 NC_021151.1 1347470 1348372 D COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase; propanediol utilization protein 1347470..1348372 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902436.1 CDS STU288_06685 NC_021151.1 1348406 1348741 R COG2926 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1348406..1348741) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902437.1 CDS STU288_06690 NC_021151.1 1348986 1350044 R COG1289 Predicted membrane protein; inner membrane protein YeeA complement(1348986..1350044) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902438.1 CDS STU288_06695 NC_021151.1 1350163 1350630 R COG3449 DNA gyrase inhibitor; DNA gyrase inhibitor complement(1350163..1350630) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902439.1 CDS dacD NC_021151.1 1350783 1351949 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase complement(1350783..1351949) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902440.1 CDS STU288_06705 NC_021151.1 1352079 1352843 R COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); thiosulfate reductase cytochrome B subunit complement(1352079..1352843) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902441.1 CDS STU288_06710 NC_021151.1 1352840 1353418 R COG0437 Fe-S-cluster-containing hydrogenase components 1; (4Fe-4S)-binding protein complement(1352840..1353418) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902442.1 CDS STU288_06715 NC_021151.1 1353433 1355709 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; thiosulfate reductase PhsA complement(1353433..1355709) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902443.1 CDS STU288_06720 NC_021151.1 1356328 1358676 D COG1357 Uncharacterized low-complexity proteins; E3 ubiquitin-protein ligase SopA 1356328..1358676 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902444.1 CDS sbcB NC_021151.1 1359019 1360449 D COG2925 Exonuclease I; exonuclease I 1359019..1360449 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902445.1 CDS STU288_06730 NC_021151.1 1360585 1361943 R COG0531 Amino acid transporters; amino acid permease complement(1360585..1361943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902446.1 CDS STU288_06735 NC_021151.1 1362229 1363143 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1362229..1363143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902447.1 CDS STU288_06740 NC_021151.1 1363189 1364013 R COG0451 Nucleoside-diphosphate-sugar epimerases; UDP-glucose 4-epimerase UDP-galactose 4-epimerase complement(1363189..1364013) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902448.1 CDS hisG NC_021151.1 1364373 1365272 D COG0040 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 1364373..1365272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902449.1 CDS STU288_06750 NC_021151.1 1365493 1366437 D COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; histidinol-phosphate aminotransferase 1365493..1366437 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902450.1 CDS STU288_06755 NC_021151.1 1366434 1367501 D COG0241 Histidinol phosphatase and related phosphatases; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1366434..1367501 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902451.1 CDS hisH NC_021151.1 1367501 1368091 D COG0118 Glutamine amidotransferase; imidazole glycerol phosphate synthase subunit HisH 1367501..1368091 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902452.1 CDS STU288_06765 NC_021151.1 1368091 1368828 D COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1368091..1368828 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902453.1 CDS STU288_06770 NC_021151.1 1368810 1369586 D COG0107 Imidazoleglycerol-phosphate synthase; imidazole glycerol phosphate synthase subunit HisF 1368810..1369586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902454.1 CDS STU288_06775 NC_021151.1 1369580 1370191 D COG0139 Phosphoribosyl-AMP cyclohydrolase; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1369580..1370191 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902455.1 CDS STU288_06780 NC_021151.1 1370272 1371255 R COG3765 Chain length determinant protein; chain length determinant protein WzzB complement(1370272..1371255) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902456.1 CDS STU288_06785 NC_021151.1 1371398 1372564 R COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(1371398..1372564) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902457.1 CDS STU288_06790 NC_021151.1 1372801 1374207 R COG0362 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase complement(1372801..1374207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902458.1 CDS STU288_06795 NC_021151.1 1374371 1375801 R COG2148 Sugar transferases involved in lipopolysaccharide synthesis; undecaprenyl-phosphate galactose phosphotransferase complement(1374371..1375801) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902459.1 CDS STU288_06800 NC_021151.1 1375873 1377306 R COG1109 Phosphomannomutase; phosphomannomutase complement(1375873..1377306) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902460.1 CDS STU288_06805 NC_021151.1 1377293 1378732 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase complement(1377293..1378732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902461.1 CDS STU288_06810 NC_021151.1 1378733 1379677 R COG0463 Glycosyltransferases involved in cell wall biogenesis; O antigen biosynthesis rhamnosyltransferase rfbN complement(1378733..1379677) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902462.1 CDS STU288_06815 NC_021151.1 1379678 1380739 R COG0438 Glycosyltransferase; mannosyl transferase complement(1379678..1380739) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902463.1 CDS STU288_06820 NC_021151.1 1381059 1382060 R COG0463 Glycosyltransferases involved in cell wall biogenesis; Glycosyl transferase family 2 complement(1381059..1382060) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902464.1 CDS STU288_06825 NC_021151.1 1382065 1383243 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen transporter complement(1382065..1383243) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902465.1 CDS STU288_06830 NC_021151.1 1383439 1384338 R COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-abequose synthase complement(1383439..1384338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902466.1 CDS STU288_06835 NC_021151.1 1384366 1385679 R COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; lipopolysaccharide biosynthesis protein RfbH complement(1384366..1385679) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902467.1 CDS STU288_06840 NC_021151.1 1385706 1386785 R COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-glucose 4,6-dehydratase complement(1385706..1386785) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902468.1 CDS STU288_06845 NC_021151.1 1386790 1387563 R COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); glucose-1-phosphate cytidylyltransferase complement(1386790..1387563) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902469.1 CDS STU288_06850 NC_021151.1 1387560 1388552 R COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(1387560..1388552) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902470.1 CDS STU288_06855 NC_021151.1 1388558 1389106 R COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1388558..1389106) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902471.1 CDS STU288_06860 NC_021151.1 1389110 1389988 R COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase RfbA complement(1389110..1389988) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902472.1 CDS STU288_06865 NC_021151.1 1390036 1390935 R COG1091 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1390036..1390935) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902473.1 CDS STU288_06870 NC_021151.1 1390935 1392020 R COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6 dehydratase complement(1390935..1392020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902474.1 CDS STU288_06875 NC_021151.1 1392397 1393290 R COG1210 UDP-glucose pyrophosphorylase; GalU regulator GalF complement(1392397..1393290) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902475.1 CDS wcaM NC_021151.1 1393468 1394871 R colanic acid biosynthesis protein complement(1393468..1394871) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902476.1 CDS STU288_06885 NC_021151.1 1394882 1396102 R COG0438 Glycosyltransferase; colanic acid biosynthesis glycosyltransferase WcaL complement(1394882..1396102) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902477.1 CDS STU288_06890 NC_021151.1 1396099 1397379 R COG2327 Uncharacterized conserved protein; colanic acid biosynthesis protein complement(1396099..1397379) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902478.1 CDS STU288_06895 NC_021151.1 1397401 1398879 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; colanic acid exporter complement(1397401..1398879) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902479.1 CDS STU288_06900 NC_021151.1 1399012 1400406 R COG2148 Sugar transferases involved in lipopolysaccharide synthesis; UDP-glucose lipid carrier transferase complement(1399012..1400406) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902480.1 CDS STU288_06905 NC_021151.1 1400460 1401830 R COG1109 Phosphomannomutase; phosphomannomutase CpsG complement(1400460..1401830) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902481.1 CDS cpsB NC_021151.1 1401941 1403377 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase complement(1401941..1403377) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902482.1 CDS STU288_06915 NC_021151.1 1403380 1404603 R COG0438 Glycosyltransferase; glycosyl transferase complement(1403380..1404603) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902483.1 CDS STU288_06920 NC_021151.1 1404600 1405073 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose mannosyl hydrolase NudD complement(1404600..1405073) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902484.1 CDS STU288_06925 NC_021151.1 1405076 1406041 R COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase complement(1405076..1406041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902485.1 CDS STU288_06930 NC_021151.1 1406044 1407165 R COG1089 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase complement(1406044..1407165) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902486.1 CDS STU288_06935 NC_021151.1 1407189 1407743 R COG0110 Acetyltransferase (isoleucine patch superfamily); acyl transferase complement(1407189..1407743) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902487.1 CDS STU288_06940 NC_021151.1 1407759 1408505 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(1407759..1408505) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902488.1 CDS wcaD NC_021151.1 1408518 1409732 R colanic acid biosynthesis protein complement(1408518..1409732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902489.1 CDS STU288_06950 NC_021151.1 1409707 1410924 R COG0438 Glycosyltransferase; glycosyl transferase complement(1409707..1410924) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902490.1 CDS STU288_06955 NC_021151.1 1410921 1411409 R COG1045 Serine acetyltransferase; acyl transferase complement(1410921..1411409) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902491.1 CDS STU288_06960 NC_021151.1 1411412 1412254 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(1411412..1412254) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902492.1 CDS STU288_06965 NC_021151.1 1412341 1414500 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; tyrosine kinase complement(1412341..1414500) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902493.1 CDS STU288_06970 NC_021151.1 1414497 1414946 R COG0394 Protein-tyrosine-phosphatase; tyrosine phosphatase complement(1414497..1414946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902494.1 CDS STU288_06975 NC_021151.1 1414952 1416091 R COG1596 Periplasmic protein involved in polysaccharide export; polysaccharide export protein Wza complement(1414952..1416091) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902495.1 CDS STU288_06980 NC_021151.1 1416766 1418346 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; inner membrane protein 1416766..1418346 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902496.1 CDS STU288_06985 NC_021151.1 1418432 1420288 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; assembly protein complement(1418432..1420288) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902497.1 CDS dcd NC_021151.1 1420327 1420908 R COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase complement(1420327..1420908) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902498.1 CDS STU288_06995 NC_021151.1 1420999 1421640 R COG0572 Uridine kinase; uridine/cytidine kinase complement(1420999..1421640) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902499.1 CDS STU288_07000 NC_021151.1 1421716 1421886 R hypothetical protein complement(1421716..1421886) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902500.1 CDS STU288_07005 NC_021151.1 1421971 1424961 D COG2202 FOG: PAS/PAC domain; PAS domain-containing protein 1421971..1424961 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902501.1 CDS STU288_07010 NC_021151.1 1424929 1425798 R COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; 3-methyl-adenine DNA glycosylase II complement(1424929..1425798) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902502.1 CDS STU288_07015 NC_021151.1 1425932 1427284 D COG0443 Molecular chaperone; chaperone 1425932..1427284 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902503.1 CDS STU288_07020 NC_021151.1 1427725 1428966 D COG0845 Membrane-fusion protein; multidrug efflux system subunit MdtA 1427725..1428966 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902504.1 CDS STU288_07025 NC_021151.1 1428966 1432088 D COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtB 1428966..1432088 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902505.1 CDS STU288_07030 NC_021151.1 1432089 1435169 D COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtC 1432089..1435169 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902506.1 CDS STU288_07035 NC_021151.1 1435166 1436578 D COG0477 Permeases of the major facilitator superfamily; transporter 1435166..1436578 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902507.1 CDS STU288_07040 NC_021151.1 1436578 1437981 D COG0642 Signal transduction histidine kinase; signal transduction histidine-protein kinase BaeS 1436578..1437981 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902508.1 CDS STU288_07045 NC_021151.1 1437978 1438700 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BaeR 1437978..1438700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902509.1 CDS STU288_07050 NC_021151.1 1438969 1440171 D COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; hypothetical protein 1438969..1440171 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902510.1 CDS STU288_07055 NC_021151.1 1440171 1440887 D hypothetical protein 1440171..1440887 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902511.1 CDS STU288_07060 NC_021151.1 1440898 1443009 D putative inner membrane protein 1440898..1443009 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902512.1 CDS STU288_07065 NC_021151.1 1443125 1444486 D COG0826 Collagenase and related proteases; protease 1443125..1444486 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902513.1 CDS STU288_07070 NC_021151.1 1445093 1445983 D type III secretion system protein 1445093..1445983 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902514.1 CDS STU288_07075 NC_021151.1 1446019 1446435 R putative cytoplasmic protein complement(1446019..1446435) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902515.1 CDS STU288_07080 NC_021151.1 1447454 1448353 D COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; lipid kinase 1447454..1448353 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902516.1 CDS STU288_07085 NC_021151.1 1448406 1449458 R COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; fructose-bisphosphate aldolase complement(1448406..1449458) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902517.1 CDS STU288_07090 NC_021151.1 1449712 1450983 D COG0477 Permeases of the major facilitator superfamily; Putative nucleoside transporter YegT 1449712..1450983 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902518.1 CDS STU288_07095 NC_021151.1 1450980 1451984 D COG1397 ADP-ribosylglycohydrolase; [Protein ADP-ribosylarginine] hydrolase-like protein 1 ADP-ribosylhydrolase 2 1450980..1451984 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902519.1 CDS STU288_07100 NC_021151.1 1451981 1452946 D COG0524 Sugar kinases, ribokinase family; sugar kinase 1451981..1452946 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902520.1 CDS STU288_07105 NC_021151.1 1452920 1453666 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(1452920..1453666) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902521.1 CDS STU288_07110 NC_021151.1 1453702 1454502 R COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(1453702..1454502) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902522.1 CDS STU288_07115 NC_021151.1 1454489 1455286 R COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase complement(1454489..1455286) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902523.1 CDS STU288_07120 NC_021151.1 1455696 1456010 D COG5455 Predicted integral membrane protein; hypothetical protein 1455696..1456010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902524.1 CDS STU288_07125 NC_021151.1 1456273 1457280 R fimbrial-like adhesin protein StcD complement(1456273..1457280) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902525.1 CDS STU288_07130 NC_021151.1 1457296 1459785 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein complement(1457296..1459785) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902526.1 CDS STU288_07135 NC_021151.1 1459799 1460482 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone protein StcB complement(1459799..1460482) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902527.1 CDS STU288_07140 NC_021151.1 1460538 1461068 R fimbrial chaperone protein complement(1460538..1461068) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902528.1 CDS STU288_07145 NC_021151.1 1461347 1461628 R hypothetical protein complement(1461347..1461628) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902529.1 CDS STU288_07150 NC_021151.1 1461906 1463015 R COG0489 ATPases involved in chromosome partitioning; antiporter inner membrane protein complement(1461906..1463015) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902530.1 CDS metG NC_021151.1 1463180 1465213 D COG0143 Methionyl-tRNA synthetase; methionyl-tRNA ligase 1463180..1465213 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902531.1 CDS STU288_07160 NC_021151.1 1465454 1465912 D COG4808 Uncharacterized protein conserved in bacteria; putative lipoprotein yehR Flags: Precursor 1465454..1465912 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902532.1 CDS STU288_07165 NC_021151.1 1466084 1466614 D COG4808 Uncharacterized protein conserved in bacteria; putative lipoprotein 1466084..1466614 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902533.1 CDS STU288_07170 NC_021151.1 1466671 1467138 R COG4807 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1466671..1467138) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902534.1 CDS STU288_07175 NC_021151.1 1467185 1467904 R COG3279 Response regulator of the LytR/AlgR family; two-component response-regulatory protein YehT complement(1467185..1467904) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902535.1 CDS STU288_07180 NC_021151.1 1467901 1469586 R COG3275 Putative regulator of cell autolysis; putative sensor kinase complement(1467901..1469586) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902536.1 CDS STU288_07185 NC_021151.1 1469809 1470540 D COG0789 Predicted transcriptional regulators; transcriptional regulator MirA 1469809..1470540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902537.1 CDS STU288_07190 NC_021151.1 1470600 1470707 D hypothetical protein 1470600..1470707 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902538.1 CDS STU288_07195 NC_021151.1 1470688 1471419 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; putative permease transmembrane component complement(1470688..1471419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902539.1 CDS STU288_07200 NC_021151.1 1471403 1472350 R COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; Methionine import ATP-binding protein metN complement(1471403..1472350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902540.1 CDS STU288_07205 NC_021151.1 1472343 1473512 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; putative ABC-type proline/glycine betaine transport system permease component complement(1472343..1473512) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902541.1 CDS STU288_07210 NC_021151.1 1473516 1474433 R COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); Osmoprotectant ABC transporter binding protein YehZ complement(1473516..1474433) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902542.1 CDS STU288_07215 NC_021151.1 1474614 1476911 R COG1472 Beta-glucosidase-related glycosidases; beta-D-glucoside glucohydrolase complement(1474614..1476911) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902543.1 CDS STU288_07220 NC_021151.1 1477178 1478908 D COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 1477178..1478908 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902544.1 CDS pbpG NC_021151.1 1478966 1479913 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine endopeptidase complement(1478966..1479913) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902545.1 CDS STU288_07230 NC_021151.1 1480079 1480666 R inner membrane protein complement(1480079..1480666) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902546.1 CDS STU288_07235 NC_021151.1 1480825 1481394 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1480825..1481394 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902547.1 CDS STU288_07240 NC_021151.1 1481443 1482204 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase complement(1481443..1482204) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902548.1 CDS STU288_07245 NC_021151.1 1482270 1483706 R COG1538 Outer membrane protein; multidrug resistance outer membrane protein MdtQ complement(1482270..1483706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902549.1 CDS STU288_07250 NC_021151.1 1484024 1484107 D hypothetical protein 1484024..1484107 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902550.1 CDS STU288_07255 NC_021151.1 1484165 1485103 R COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase C complement(1484165..1485103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902551.1 CDS STU288_07260 NC_021151.1 1485212 1486405 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; salicylate hydroxylase complement(1485212..1486405) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902552.1 CDS STU288_07265 NC_021151.1 1486420 1487064 R COG0625 Glutathione S-transferase; maleylacetoacetate isomerase complement(1486420..1487064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902553.1 CDS STU288_07270 NC_021151.1 1487073 1487774 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); Fumarylacetoacetate hydrolase domain-containing protein 1 complement(1487073..1487774) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902554.1 CDS STU288_07275 NC_021151.1 1487790 1488827 R COG3435 Gentisate 1,2-dioxygenase; gentisate 1,2-dioxygenase complement(1487790..1488827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902555.1 CDS STU288_07280 NC_021151.1 1488839 1490197 R COG0477 Permeases of the major facilitator superfamily; n-hydroxybenzoate transporter complement(1488839..1490197) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902556.1 CDS STU288_07285 NC_021151.1 1490323 1491231 D COG0583 Transcriptional regulator; putative RuBisCO transcriptional regulator 1490323..1491231 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902557.1 CDS STU288_07290 NC_021151.1 1491363 1491761 D COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 1491363..1491761 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902558.1 CDS STU288_07295 NC_021151.1 1491758 1492453 D COG1346 Putative effector of murein hydrolase; hypothetical protein 1491758..1492453 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902559.1 CDS STU288_07300 NC_021151.1 1492607 1493491 D COG0295 Cytidine deaminase; cytidine deaminase 1492607..1493491 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902560.1 CDS STU288_07305 NC_021151.1 1493668 1494387 D COG2949 Uncharacterized membrane protein; vancomycin high temperature exclusion protein 1493668..1494387 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902561.1 CDS STU288_07310 NC_021151.1 1494390 1494629 D hypothetical protein 1494390..1494629 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902562.1 CDS STU288_07315 NC_021151.1 1494834 1496075 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; dihydropyrimidine dehydrogenase subunit A 1494834..1496075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902563.1 CDS STU288_07320 NC_021151.1 1496069 1497304 D COG0167 Dihydroorotate dehydrogenase; dihydropyrimidine dehydrogenase subunit B 1496069..1497304 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902564.1 CDS mglC NC_021151.1 1497379 1498389 R COG4211 ABC-type glucose/galactose transport system, permease component; beta-methylgalactoside transporter inner membrane component complement(1497379..1498389) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902565.1 CDS STU288_07330 NC_021151.1 1498405 1499925 R COG1129 ABC-type sugar transport system, ATPase component; galactose/methyl galaxtoside transporter ATP-binding protein complement(1498405..1499925) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902566.1 CDS STU288_07335 NC_021151.1 1500059 1501057 R COG1879 ABC-type sugar transport system, periplasmic component; methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB complement(1500059..1501057) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902567.1 CDS STU288_07340 NC_021151.1 1501556 1502578 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalS complement(1501556..1502578) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902568.1 CDS STU288_07345 NC_021151.1 1502728 1503870 R COG2311 Predicted membrane protein; hypothetical protein complement(1502728..1503870) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902569.1 CDS folE NC_021151.1 1503885 1504553 R COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I complement(1503885..1504553) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902570.1 CDS STU288_07355 NC_021151.1 1504883 1505740 D COG0627 Predicted esterase; S-formylglutathione hydrolase 1504883..1505740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902571.1 CDS STU288_07360 NC_021151.1 1505729 1506118 R COG1396 Predicted transcriptional regulators; putative DNA-binding protein complement(1505729..1506118) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902572.1 CDS STU288_07365 NC_021151.1 1506123 1507490 R COG1760 L-serine deaminase; L-serine dehydratase complement(1506123..1507490) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902573.1 CDS STU288_07370 NC_021151.1 1507707 1508594 D COG0560 Phosphoserine phosphatase; hydrolase 1507707..1508594 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902574.1 CDS STU288_07375 NC_021151.1 1508627 1509949 D COG2271 Sugar phosphate permease; Glycerol-3-phosphate transporter G-3-P transporter 1508627..1509949 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902575.1 CDS STU288_07380 NC_021151.1 1509993 1511984 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA complement(1509993..1511984) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902576.1 CDS STU288_07385 NC_021151.1 1512330 1513799 R COG0833 Amino acid transporters; lysine transporter complement(1512330..1513799) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902577.1 CDS STU288_07390 NC_021151.1 1513989 1514852 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator complement(1513989..1514852) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902578.1 CDS STU288_07395 NC_021151.1 1514973 1516022 D COG2855 Predicted membrane protein; putative inner membrane protein 1514973..1516022 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902579.1 CDS STU288_07400 NC_021151.1 1516101 1516958 D COG0648 Endonuclease IV; endonuclease IV 1516101..1516958 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902580.1 CDS STU288_07405 NC_021151.1 1517023 1518711 R COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunits IIBC complement(1517023..1518711) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902581.1 CDS fruK NC_021151.1 1518728 1519666 R COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase complement(1518728..1519666) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902582.1 CDS STU288_07415 NC_021151.1 1519666 1520796 R COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(1519666..1520796) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902583.1 CDS STU288_07420 NC_021151.1 1520864 1520971 R hypothetical protein complement(1520864..1520971) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902584.1 CDS STU288_07425 NC_021151.1 1521165 1522346 D COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter B 1521165..1522346 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902585.1 CDS STU288_07430 NC_021151.1 1522411 1523076 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; hypothetical protein complement(1522411..1523076) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902586.1 CDS STU288_07435 NC_021151.1 1523588 1523866 R COG0727 Predicted Fe-S-cluster oxidoreductase; protein YeiW complement(1523588..1523866) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902587.1 CDS STU288_07440 NC_021151.1 1524166 1524738 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 1524166..1524738 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902588.1 CDS STU288_07445 NC_021151.1 1524951 1525937 D COG0523 Putative GTPases (G3E family); hypothetical protein 1524951..1525937 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902589.1 CDS STU288_07450 NC_021151.1 1525967 1526686 D COG0671 Membrane-associated phospholipid phosphatase; Inner membrane protein yeiU 1525967..1526686 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902590.1 CDS spr NC_021151.1 1527100 1527672 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); outer membrane lipoprotein 1527100..1527672 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902591.1 CDS STU288_07460 NC_021151.1 1527998 1529554 D COG2200 FOG: EAL domain; phage resistance protein 1527998..1529554 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902592.1 CDS STU288_07465 NC_021151.1 1529661 1531466 D COG4166 ABC-type oligopeptide transport system, periplasmic component; microcin C ABC transporter periplasmic binding protein YejA 1529661..1531466 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902593.1 CDS STU288_07470 NC_021151.1 1531476 1532570 D COG4174 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease YejB 1531476..1532570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902594.1 CDS STU288_07475 NC_021151.1 1532570 1533595 D COG4239 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease 1532570..1533595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902595.1 CDS STU288_07480 NC_021151.1 1533597 1535186 D COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; microcin C ABC transporter ATP-binding protein YejF 1533597..1535186 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902596.1 CDS STU288_07485 NC_021151.1 1535190 1535534 R hypothetical protein complement(1535190..1535534) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902597.1 CDS STU288_07490 NC_021151.1 1535925 1537115 R COG0477 Permeases of the major facilitator superfamily; bicyclomycin/multidrug efflux system complement(1535925..1537115) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902598.1 CDS STU288_07495 NC_021151.1 1537143 1537838 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 16S rRNA pseudouridylate synthase A complement(1537143..1537838) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902599.1 CDS STU288_07500 NC_021151.1 1537990 1539750 D COG1061 DNA or RNA helicases of superfamily II; hypothetical protein 1537990..1539750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902600.1 CDS STU288_07505 NC_021151.1 1539875 1540159 D COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25 1539875..1540159 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902601.1 CDS STU288_07510 NC_021151.1 1540916 1541923 R COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA complement(1540916..1541923) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902602.1 CDS STU288_07515 NC_021151.1 1542103 1542330 D COG3082 Uncharacterized protein conserved in bacteria; hypothetical protein 1542103..1542330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902603.1 CDS STU288_07520 NC_021151.1 1542362 1544122 D COG3083 Predicted hydrolase of alkaline phosphatase superfamily; hypothetical protein 1542362..1544122 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902604.1 CDS STU288_07525 NC_021151.1 1544403 1545074 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit complement(1544403..1545074) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902605.1 CDS STU288_07530 NC_021151.1 1545179 1545304 R hypothetical protein complement(1545179..1545304) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902606.1 CDS STU288_07535 NC_021151.1 1545572 1547401 D COG1835 Predicted acyltransferases; O-antigen acetylase 1545572..1547401 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902607.1 CDS STU288_07540 NC_021151.1 1547455 1547898 R Putative tail fiber assembly complement(1547455..1547898) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902608.1 CDS STU288_07545 NC_021151.1 1548276 1548803 R Putative tail fiber assembly complement(1548276..1548803) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902609.1 CDS STU288_07550 NC_021151.1 1548806 1550047 R bacteriophage protein complement(1548806..1550047) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902610.1 CDS STU288_07555 NC_021151.1 1550108 1550626 R COG3740 Phage head maturation protease; Membrane metalloendopeptidase complement(1550108..1550626) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902611.1 CDS STU288_07560 NC_021151.1 1550640 1550969 R Phage portal protein complement(1550640..1550969) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902612.1 CDS STU288_07565 NC_021151.1 1551266 1552597 D COG4928 Predicted P-loop ATPase; bacteriophage protein 1551266..1552597 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902613.1 CDS STU288_07570 NC_021151.1 1552626 1552991 R putative phage antiterminator complement(1552626..1552991) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902614.1 CDS STU288_07575 NC_021151.1 1553009 1554004 R putative cytoplasmic protein complement(1553009..1554004) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902615.1 CDS STU288_07580 NC_021151.1 1554006 1554236 R hypothetical protein complement(1554006..1554236) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902616.1 CDS STU288_07585 NC_021151.1 1554327 1556693 R COG4886 Leucine-rich repeat (LRR) protein; E3 ubiquitin-protein ligase SspH2 complement(1554327..1556693) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902617.1 CDS STU288_07590 NC_021151.1 1557361 1558152 R side tail fiber protein complement(1557361..1558152) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902618.1 CDS STU288_07595 NC_021151.1 1558455 1558658 D DinI DNA-damage-inducible protein I 1558455..1558658 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902619.1 CDS STU288_07600 NC_021151.1 1558850 1559407 R hypothetical protein complement(1558850..1559407) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902620.1 CDS STU288_07605 NC_021151.1 1560143 1560790 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarP 1560143..1560790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902621.1 CDS STU288_07610 NC_021151.1 1560834 1561877 R COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH complement(1560834..1561877) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902622.1 CDS STU288_07615 NC_021151.1 1561874 1562431 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE complement(1561874..1562431) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902623.1 CDS STU288_07620 NC_021151.1 1562428 1564359 R COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF complement(1562428..1564359) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902624.1 CDS STU288_07625 NC_021151.1 1564356 1564835 R COG2332 Cytochrome c-type biogenesis protein CcmE; Cytochrome c-type biogenesis protein CcmE, heme chaperone complement(1564356..1564835) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902625.1 CDS STU288_07630 NC_021151.1 1564832 1565044 R COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD complement(1564832..1565044) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902626.1 CDS STU288_07635 NC_021151.1 1565041 1565778 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmC complement(1565041..1565778) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902627.1 CDS STU288_07640 NC_021151.1 1565830 1566489 R COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmB complement(1565830..1566489) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902628.1 CDS STU288_07645 NC_021151.1 1566486 1567103 R COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA complement(1566486..1567103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902629.1 CDS STU288_07650 NC_021151.1 1567124 1567726 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein NapC complement(1567124..1567726) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902630.1 CDS napB NC_021151.1 1567736 1568185 R COG3043 Nitrate reductase cytochrome c-type subunit; nitrate reductase cytochrome C550 subunit complement(1567736..1568185) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902631.1 CDS napH NC_021151.1 1568301 1569170 R COG0348 Polyferredoxin; quinol dehydrogenase membrane component complement(1568301..1569170) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902632.1 CDS napG NC_021151.1 1569157 1569852 R COG1145 Ferredoxin; quinol dehydrogenase periplasmic component complement(1569157..1569852) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902633.1 CDS STU288_07670 NC_021151.1 1569859 1572345 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; nitrate reductase catalytic subunit complement(1569859..1572345) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902634.1 CDS STU288_07675 NC_021151.1 1572342 1572605 R COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase; periplasmic nitrate reductase complement(1572342..1572605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902635.1 CDS STU288_07680 NC_021151.1 1572595 1573086 R COG1145 Ferredoxin; ferredoxin-type protein complement(1572595..1573086) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902636.1 CDS STU288_07685 NC_021151.1 1573500 1573994 D COG4574 Serine protease inhibitor ecotin; ecotin 1573500..1573994 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902637.1 CDS STU288_07690 NC_021151.1 1574203 1575846 R COG4615 ABC-type siderophore export system, fused ATPase and permease components; multidrug transporter membrane component/ATP-binding component complement(1574203..1575846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902638.1 CDS STU288_07695 NC_021151.1 1575922 1576572 R COG3145 Alkylated DNA repair protein; alpha-ketoglutarate-dependent dioxygenase AlkB complement(1575922..1576572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902639.1 CDS STU288_07700 NC_021151.1 1576575 1577633 R COG2169 Adenosine deaminase; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase complement(1576575..1577633) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902640.1 CDS STU288_07705 NC_021151.1 1577717 1578769 R COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; thiamine biosynthesis lipoprotein ApbE complement(1577717..1578769) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902641.1 CDS STU288_07710 NC_021151.1 1578884 1580020 R COG3203 Outer membrane protein (porin); outer membrane porin protein C complement(1578884..1580020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902642.1 CDS STU288_07715 NC_021151.1 1580749 1583418 D COG0642 Signal transduction histidine kinase; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 1580749..1583418 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902643.1 CDS STU288_07720 NC_021151.1 1583435 1584085 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator RcsB 1583435..1584085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902644.1 CDS STU288_07725 NC_021151.1 1584188 1587034 R COG0642 Signal transduction histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(1584188..1587034) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902645.1 CDS STU288_07730 NC_021151.1 1587152 1589788 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A complement(1587152..1589788) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902646.1 CDS STU288_07735 NC_021151.1 1589868 1590098 D hypothetical protein 1589868..1590098 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902647.1 CDS STU288_07740 NC_021151.1 1590198 1591400 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; MR-MLE-family protein complement(1590198..1591400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902648.1 CDS STU288_07745 NC_021151.1 1591415 1592740 R COG0477 Permeases of the major facilitator superfamily; transmembrane transpot protein complement(1591415..1592740) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902649.1 CDS STU288_07750 NC_021151.1 1592979 1593674 D COG1802 Transcriptional regulators; GntR family transcriptional regulator 1592979..1593674 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902650.1 CDS STU288_07755 NC_021151.1 1593757 1594485 D COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 1593757..1594485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902651.1 CDS STU288_07760 NC_021151.1 1594841 1597126 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 1594841..1597126 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902652.1 CDS nrdB NC_021151.1 1597239 1598369 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1597239..1598369 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902653.1 CDS STU288_07770 NC_021151.1 1598369 1598623 D COG0633 Ferredoxin; 2Fe-2S ferredoxin YfaE 1598369..1598623 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902654.1 CDS STU288_07775 NC_021151.1 1598625 1599815 R COG0477 Permeases of the major facilitator superfamily; putative permease complement(1598625..1599815) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902655.1 CDS STU288_07780 NC_021151.1 1599977 1600855 D COG0583 Transcriptional regulator; transcriptional regulator 1599977..1600855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902656.1 CDS glpQ NC_021151.1 1600971 1602041 R COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(1600971..1602041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902657.1 CDS glpT NC_021151.1 1602046 1603404 R COG2271 Sugar phosphate permease; sn-glycerol-3-phosphate transporter complement(1602046..1603404) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902658.1 CDS glpA NC_021151.1 1603677 1605305 D COG0578 Glycerol-3-phosphate dehydrogenase; sn-glycerol-3-phosphate dehydrogenase subunit A 1603677..1605305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902659.1 CDS STU288_07800 NC_021151.1 1605295 1606554 D COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; anaerobic glycerol-3-phosphate dehydrogenase subunit B 1605295..1606554 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902660.1 CDS glpC NC_021151.1 1606551 1607741 D COG0247 Fe-S oxidoreductase; sn-glycerol-3-phosphate dehydrogenase subunit C 1606551..1607741 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902661.1 CDS STU288_07810 NC_021151.1 1608167 1609189 D deubiquitinase SseL 1608167..1609189 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902662.1 CDS STU288_07815 NC_021151.1 1609299 1609475 R putative cytoplasmic protein complement(1609299..1609475) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902663.1 CDS STU288_07820 NC_021151.1 1609481 1610284 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2-keto-3-deoxy-L-rhamnonate aldolase complement(1609481..1610284) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902664.1 CDS STU288_07825 NC_021151.1 1610310 1611599 R COG0477 Permeases of the major facilitator superfamily; major facilitator family protein complement(1610310..1611599) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902665.1 CDS STU288_07830 NC_021151.1 1611655 1612860 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-rhamnonate dehydratase complement(1611655..1612860) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902666.1 CDS STU288_07835 NC_021151.1 1612874 1613656 R COG1414 Transcriptional regulator; putative transcriptional regulator complement(1612874..1613656) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902667.1 CDS STU288_07840 NC_021151.1 1613906 1615102 R COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein complement(1613906..1615102) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902668.1 CDS STU288_07845 NC_021151.1 1615217 1615759 R hypothetical protein complement(1615217..1615759) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902669.1 CDS STU288_07850 NC_021151.1 1616038 1616463 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphatase NudI 1616038..1616463 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902670.1 CDS STU288_07855 NC_021151.1 1616508 1617113 R lipopolysaccharide core heptose(II)-phosphate phosphatase complement(1616508..1617113) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902671.1 CDS STU288_07860 NC_021151.1 1617412 1618551 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 1617412..1618551 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902672.1 CDS STU288_07865 NC_021151.1 1618554 1619537 D COG0463 Glycosyltransferases involved in cell wall biogenesis; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 1618554..1619537 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902673.1 CDS STU288_07870 NC_021151.1 1619534 1621516 D COG0223 Methionyl-tRNA formyltransferase; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 1619534..1621516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902674.1 CDS STU288_07875 NC_021151.1 1621513 1622412 D COG0726 Predicted xylanase/chitin deacetylase; 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD 1621513..1622412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902675.1 CDS arnT NC_021151.1 1622412 1624055 D COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; 4-amino-4-deoxy-L-arabinose transferase 1622412..1624055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902676.1 CDS STU288_07885 NC_021151.1 1624052 1624387 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE 1624052..1624387 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902677.1 CDS STU288_07890 NC_021151.1 1624387 1624764 D 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 1624387..1624764 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902678.1 CDS STU288_07895 NC_021151.1 1624759 1625016 R signal transduction protein PmrD complement(1624759..1625016) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902679.1 CDS STU288_07900 NC_021151.1 1625114 1626481 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; O-succinylbenzoic acid--CoA ligase complement(1625114..1626481) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902680.1 CDS STU288_07905 NC_021151.1 1626478 1627440 R COG1441 O-succinylbenzoate synthase; O-succinylbenzoate synthase complement(1626478..1627440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902681.1 CDS STU288_07910 NC_021151.1 1627440 1628297 R COG0447 Dihydroxynaphthoic acid synthase; dihydroxynaphthoic acid synthetase complement(1627440..1628297) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902682.1 CDS STU288_07915 NC_021151.1 1628312 1629070 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(1628312..1629070) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902683.1 CDS STU288_07920 NC_021151.1 1629067 1630737 R COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(1629067..1630737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902684.1 CDS STU288_07925 NC_021151.1 1630823 1632118 R COG1169 Isochorismate synthase; menaquinone-specific isochorismate synthase complement(1630823..1632118) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902685.1 CDS STU288_07930 NC_021151.1 1632219 1632524 R COG4575 Uncharacterized conserved protein; hypothetical protein complement(1632219..1632524) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902686.1 CDS STU288_07935 NC_021151.1 1632579 1633040 R COG2153 Predicted acyltransferase; acyltransferase complement(1632579..1633040) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902687.1 CDS STU288_07940 NC_021151.1 1633101 1634018 D COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease Z 1633101..1634018 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902688.1 CDS STU288_07945 NC_021151.1 1634084 1635085 D COG0835 Chemotaxis signal transduction protein; receptor/regulator protein 1634084..1635085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902689.1 CDS STU288_07950 NC_021151.1 1635126 1636907 R COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; lipoprotein complement(1635126..1636907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902690.1 CDS STU288_07955 NC_021151.1 1637018 1637137 R hypothetical protein complement(1637018..1637137) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902691.1 CDS STU288_07960 NC_021151.1 1637427 1637534 D hypothetical protein 1637427..1637534 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902692.1 CDS STU288_07965 NC_021151.1 1637795 1639252 R COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH:ubiquinone oxidoreductase subunit N complement(1637795..1639252) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902693.1 CDS STU288_07970 NC_021151.1 1639259 1640788 R COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH:ubiquinone oxidoreductase subunit M complement(1639259..1640788) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902694.1 CDS STU288_07975 NC_021151.1 1641102 1642943 R COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH:ubiquinone oxidoreductase subunit L complement(1641102..1642943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902695.1 CDS STU288_07980 NC_021151.1 1642940 1643242 R COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH:ubiquinone oxidoreductase subunit K complement(1642940..1643242) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902696.1 CDS STU288_07985 NC_021151.1 1643239 1643793 R COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH:ubiquinone oxidoreductase subunit J complement(1643239..1643793) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902697.1 CDS STU288_07990 NC_021151.1 1643804 1644346 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I complement(1643804..1644346) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902698.1 CDS STU288_07995 NC_021151.1 1644361 1645338 R COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH:ubiquinone oxidoreductase subunit H complement(1644361..1645338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902699.1 CDS STU288_08000 NC_021151.1 1645335 1648061 R COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G complement(1645335..1648061) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902700.1 CDS STU288_08005 NC_021151.1 1648092 1649429 R COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase I subunit F complement(1648092..1649429) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902701.1 CDS STU288_08010 NC_021151.1 1649426 1649926 R COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; NADH dehydrogenase subunit E complement(1649426..1649926) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902702.1 CDS STU288_08015 NC_021151.1 1649929 1651731 R COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(1649929..1651731) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902703.1 CDS STU288_08020 NC_021151.1 1651818 1652480 R COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B complement(1651818..1652480) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902704.1 CDS STU288_08025 NC_021151.1 1652496 1652939 R COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH:ubiquinone oxidoreductase subunit A complement(1652496..1652939) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902705.1 CDS STU288_08030 NC_021151.1 1653566 1654504 R COG0583 Transcriptional regulator; DNA-binding transcriptional repressor LrhA complement(1653566..1654504) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902706.1 CDS STU288_08035 NC_021151.1 1655436 1656650 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase AlaT 1655436..1656650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902707.1 CDS STU288_08040 NC_021151.1 1656744 1657343 D COG1896 Predicted hydrolases of HD superfamily; 5'-nucleotidase 1656744..1657343 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902708.1 CDS STU288_08045 NC_021151.1 1657435 1659261 R COG0471 Di- and tricarboxylate transporters; sodium/sulfate transporter complement(1657435..1659261) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902709.1 CDS STU288_08050 NC_021151.1 1659338 1659997 R COG0637 Predicted phosphatase/phosphohexomutase; phosphatase complement(1659338..1659997) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902710.1 CDS STU288_08055 NC_021151.1 1660008 1660502 R COG3013 Uncharacterized conserved protein; hypothetical protein complement(1660008..1660502) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902711.1 CDS STU288_08060 NC_021151.1 1660585 1661040 R COG3092 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1660585..1661040) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902712.1 CDS STU288_08065 NC_021151.1 1661380 1662582 D COG0282 Acetate kinase; acetate kinase A/propionate kinase 2 1661380..1662582 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902713.1 CDS STU288_08070 NC_021151.1 1662659 1664803 D COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 1662659..1664803 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902714.1 CDS STU288_08075 NC_021151.1 1665021 1666541 D COG1288 Predicted membrane protein; hypothetical protein 1665021..1666541 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902715.1 CDS STU288_08080 NC_021151.1 1666590 1667543 R COG3958 Transketolase, C-terminal subunit; transketolase complement(1666590..1667543) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902716.1 CDS STU288_08085 NC_021151.1 1667536 1668366 R COG3959 Transketolase, N-terminal subunit; transketolase domain protein complement(1667536..1668366) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902717.1 CDS ulaA NC_021151.1 1668363 1669754 R COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC complement(1668363..1669754) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902718.1 CDS STU288_08095 NC_021151.1 1669775 1670047 R COG3414 Phosphotransferase system, galactitol-specific IIB component; putative sugar phosphotransferase component IIB complement(1669775..1670047) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902719.1 CDS STU288_08100 NC_021151.1 1670128 1670571 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); sugar phosphotransferase component II A complement(1670128..1670571) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902720.1 CDS STU288_08105 NC_021151.1 1670570 1670743 D hypothetical protein 1670570..1670743 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902721.1 CDS STU288_08110 NC_021151.1 1670824 1671843 D COG1609 Transcriptional regulators; HTH-type transcriptional repressor purR 1670824..1671843 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902722.1 CDS STU288_08115 NC_021151.1 1671849 1672400 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase YfcD complement(1671849..1672400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902723.1 CDS STU288_08120 NC_021151.1 1672460 1673011 R COG0622 Predicted phosphoesterase; phosphodiesterase complement(1672460..1673011) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902724.1 CDS STU288_08125 NC_021151.1 1673067 1673711 R COG0625 Glutathione S-transferase; glutathione S-transferase complement(1673067..1673711) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902725.1 CDS STU288_08130 NC_021151.1 1673854 1674501 D COG0625 Glutathione S-transferase; glutathione-S transferase 1673854..1674501 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902726.1 CDS STU288_08135 NC_021151.1 1674627 1675520 D COG1090 Predicted nucleoside-diphosphate sugar epimerase; hypothetical protein 1674627..1675520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902727.1 CDS STU288_08140 NC_021151.1 1675572 1676345 R COG4598 ABC-type histidine transport system, ATPase component; histidine/lysine/arginine/ornithine transporter subunit complement(1675572..1676345) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902728.1 CDS STU288_08145 NC_021151.1 1676359 1677066 R COG4160 ABC-type arginine/histidine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisM complement(1676359..1677066) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902729.1 CDS STU288_08150 NC_021151.1 1677063 1677749 R COG4215 ABC-type arginine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisQ complement(1677063..1677749) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902730.1 CDS STU288_08155 NC_021151.1 1677932 1678714 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; histidine ABC transporter substrate-binding protein HisJ complement(1677932..1678714) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902731.1 CDS STU288_08160 NC_021151.1 1678952 1679734 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter lysine/arginine/ornithine binding periplasmic protein complement(1678952..1679734) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902732.1 CDS STU288_08165 NC_021151.1 1680023 1680592 R COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1680023..1680592) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902733.1 CDS STU288_08170 NC_021151.1 1680619 1682025 R COG0833 Amino acid transporters; amino acid permease complement(1680619..1682025) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902734.1 CDS STU288_08175 NC_021151.1 1682089 1683192 R COG3457 Predicted amino acid racemase; amino acid racemase complement(1682089..1683192) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902735.1 CDS STU288_08180 NC_021151.1 1683194 1684615 R COG0531 Amino acid transporters; High-affinity glutamine permease complement(1683194..1684615) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902736.1 CDS STU288_08185 NC_021151.1 1684706 1686103 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1684706..1686103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902737.1 CDS STU288_08190 NC_021151.1 1686314 1687741 D COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; putative sigma L-dependent transcriptional regulator yqiR 1686314..1687741 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902738.1 CDS STU288_08195 NC_021151.1 1687777 1689294 R COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; amidophosphoribosyltransferase complement(1687777..1689294) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902739.1 CDS STU288_08200 NC_021151.1 1689332 1689820 R COG1286 Uncharacterized membrane protein, required for colicin V production; colicin V production protein complement(1689332..1689820) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902740.1 CDS STU288_08205 NC_021151.1 1690131 1690805 R COG3147 Uncharacterized protein conserved in bacteria; cell division protein DedD complement(1690131..1690805) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902741.1 CDS STU288_08210 NC_021151.1 1690795 1692063 R COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(1690795..1692063) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902742.1 CDS STU288_08215 NC_021151.1 1692131 1693045 R COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta complement(1692131..1693045) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902743.1 CDS STU288_08220 NC_021151.1 1693195 1693854 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(1693195..1693854) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902744.1 CDS truA NC_021151.1 1693903 1694715 R COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A complement(1693903..1694715) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902745.1 CDS STU288_08230 NC_021151.1 1694715 1695728 R COG0136 Aspartate-semialdehyde dehydrogenase; semialdehyde dehydrogenase complement(1694715..1695728) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902746.1 CDS STU288_08235 NC_021151.1 1695796 1696932 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; erythronate-4-phosphate dehydrogenase PdxB complement(1695796..1696932) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902747.1 CDS flk NC_021151.1 1697036 1698037 D flagella biosynthesis regulator 1697036..1698037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902748.1 CDS STU288_08245 NC_021151.1 1698034 1699212 R COG0477 Permeases of the major facilitator superfamily; transporter complement(1698034..1699212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902749.1 CDS STU288_08250 NC_021151.1 1699392 1699766 R Putative bacteriophage protein complement(1699392..1699766) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902750.1 CDS STU288_08255 NC_021151.1 1699939 1700187 D COG3423 Predicted transcriptional regulator; DNA-binding protein 1699939..1700187 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902751.1 CDS STU288_08260 NC_021151.1 1700356 1700724 D putative cytoplasmic protein 1700356..1700724 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902752.1 CDS STU288_08265 NC_021151.1 1700724 1701242 D lipoprotein 1700724..1701242 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902753.1 CDS STU288_08270 NC_021151.1 1701309 1701965 R COG1266 Predicted metal-dependent membrane protease; putative inner membrane protein complement(1701309..1701965) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902754.1 CDS STU288_08275 NC_021151.1 1702063 1703277 R COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase I complement(1702063..1703277) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902755.1 CDS mnmC NC_021151.1 1703437 1705437 D COG4121 Uncharacterized conserved protein; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 1703437..1705437 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902756.1 CDS STU288_08285 NC_021151.1 1705489 1705764 R hypothetical protein complement(1705489..1705764) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902757.1 CDS STU288_08290 NC_021151.1 1705797 1706345 R COG3101 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1705797..1706345) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902758.1 CDS STU288_08295 NC_021151.1 1706345 1707154 R COG0730 Predicted permeases; hypothetical protein complement(1706345..1707154) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902759.1 CDS mepA NC_021151.1 1707154 1707978 R COG3770 Murein endopeptidase; penicillin-insensitive murein endopeptidase complement(1707154..1707978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902760.1 CDS STU288_08305 NC_021151.1 1707982 1709067 R COG0082 Chorismate synthase; chorismate synthase complement(1707982..1709067) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902761.1 CDS STU288_08310 NC_021151.1 1709103 1710035 R COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1709103..1710035) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902762.1 CDS STU288_08315 NC_021151.1 1710201 1710752 D COG2840 Uncharacterized protein conserved in bacteria; hypothetical protein 1710201..1710752 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902763.1 CDS STU288_08320 NC_021151.1 1710852 1711337 R COG2062 Phosphohistidine phosphatase SixA; phosphohistidine phosphatase complement(1710852..1711337) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902764.1 CDS fadJ NC_021151.1 1711546 1713693 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(1711546..1713693) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902765.1 CDS fadI NC_021151.1 1713693 1715003 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(1713693..1715003) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902766.1 CDS STU288_08335 NC_021151.1 1715181 1715465 R COG3691 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(1715181..1715465) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902767.1 CDS STU288_08340 NC_021151.1 1715836 1717143 D COG2067 Long-chain fatty acid transport protein; long-chain fatty acid outer membrane transporter 1715836..1717143 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902768.1 CDS STU288_08345 NC_021151.1 1717204 1717959 R COG2853 Surface lipoprotein; ABC transporter outer membrane lipoprotein complement(1717204..1717959) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902769.1 CDS STU288_08350 NC_021151.1 1718248 1719189 D COG2116 Formate/nitrite family of transporters; hypothetical protein 1718248..1719189 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902770.1 CDS STU288_08355 NC_021151.1 1719496 1720434 R COG4571 Outer membrane protease; outer membrane protease complement(1719496..1720434) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902771.1 CDS STU288_08360 NC_021151.1 1720702 1721949 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; phosphoglycerate transport system transcriptional regulator PgtA complement(1720702..1721949) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902772.1 CDS STU288_08365 NC_021151.1 1721939 1723945 R COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system; phosphoglycerate transport system sensor protein PgtB complement(1721939..1723945) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902773.1 CDS STU288_08370 NC_021151.1 1723942 1725135 R COG1840 ABC-type Fe3+ transport system, periplasmic component; phosphoglycerate transport regulatory protein precursor complement(1723942..1725135) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902774.1 CDS STU288_08375 NC_021151.1 1725023 1725235 D hypothetical protein 1725023..1725235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902775.1 CDS STU288_08380 NC_021151.1 1725571 1726962 D COG2271 Sugar phosphate permease; phosphoglycerate transporter protein 1725571..1726962 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902776.1 CDS STU288_08385 NC_021151.1 1727238 1727480 R hypothetical protein complement(1727238..1727480) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902777.1 CDS STU288_08390 NC_021151.1 1727641 1727754 R hypothetical protein complement(1727641..1727754) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902778.1 CDS STU288_08395 NC_021151.1 1728002 1728922 D COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis palmitoleoyl acyltransferase 1728002..1728922 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902779.1 CDS STU288_08400 NC_021151.1 1729446 1730684 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase complement(1729446..1730684) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902780.1 CDS glk NC_021151.1 1731405 1732370 R COG0837 Glucokinase; glucokinase complement(1731405..1732370) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902781.1 CDS STU288_08410 NC_021151.1 1732574 1733809 D ion channel protein 1732574..1733809 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902782.1 CDS STU288_08415 NC_021151.1 1733829 1735481 R COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes; indolepyruvate decarboxylase complement(1733829..1735481) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902783.1 CDS STU288_08420 NC_021151.1 1735661 1736659 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); ion-channel protein 1735661..1736659 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902784.1 CDS STU288_08425 NC_021151.1 1736773 1737099 D hypothetical protein 1736773..1737099 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902785.1 CDS STU288_08430 NC_021151.1 1737160 1738401 R COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein MntH complement(1737160..1738401) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902786.1 CDS STU288_08435 NC_021151.1 1738744 1739946 D COG1972 Nucleoside permease; Solute carrier family 28 member 3 Concentrative Na(+)-nucleoside cotransporter 3 1738744..1739946 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902787.1 CDS STU288_08440 NC_021151.1 1739999 1742188 R COG2199 FOG: GGDEF domain; hypothetical protein complement(1739999..1742188) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902788.1 CDS STU288_08445 NC_021151.1 1742794 1743156 D hypothetical protein 1742794..1743156 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902789.1 CDS STU288_08450 NC_021151.1 1743158 1743550 D hypothetical protein 1743158..1743550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902790.1 CDS gltX NC_021151.1 1743604 1745019 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA ligase complement(1743604..1745019) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902791.1 CDS STU288_08460 NC_021151.1 1745835 1746719 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator XapR complement(1745835..1746719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902792.1 CDS STU288_08465 NC_021151.1 1746771 1746929 R hypothetical protein complement(1746771..1746929) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902793.1 CDS STU288_08470 NC_021151.1 1746988 1748244 R COG0477 Permeases of the major facilitator superfamily; nucleoside permease NupG complement(1746988..1748244) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902794.1 CDS STU288_08475 NC_021151.1 1748299 1749132 R COG0005 Purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(1748299..1749132) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902795.1 CDS STU288_08480 NC_021151.1 1749388 1750149 D hypothetical protein 1749388..1750149 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902796.1 CDS STU288_08485 NC_021151.1 1750211 1751137 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1750211..1751137) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902797.1 CDS STU288_08490 NC_021151.1 1751227 1752225 D COG0385 Predicted Na+-dependent transporter; Sodium/bile acid cotransporter 7-B Na(+)/bile acid cotransporter 7-B 1751227..1752225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902798.1 CDS STU288_08495 NC_021151.1 1752222 1752440 R COG3530 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1752222..1752440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902799.1 CDS ligA NC_021151.1 1752442 1754457 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA complement(1752442..1754457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902800.1 CDS STU288_08505 NC_021151.1 1754529 1755515 R COG3115 Cell division protein; cell division protein ZipA complement(1754529..1755515) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902801.1 CDS STU288_08510 NC_021151.1 1755747 1756508 D COG2981 Uncharacterized protein involved in cysteine biosynthesis; sulfate transport protein CysZ 1755747..1756508 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902802.1 CDS STU288_08515 NC_021151.1 1756672 1757643 D COG0031 Cysteine synthase; cysteine synthase A 1756672..1757643 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902803.1 CDS STU288_08520 NC_021151.1 1757762 1757887 R hypothetical protein complement(1757762..1757887) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902804.1 CDS STU288_08525 NC_021151.1 1758027 1758284 D COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein ptsH 1758027..1758284 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902805.1 CDS STU288_08530 NC_021151.1 1758333 1760060 D COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 1758333..1760060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902806.1 CDS STU288_08535 NC_021151.1 1760101 1760610 D COG2190 Phosphotransferase system IIA components; PTS system glucose-specific transporter subunit IIA 1760101..1760610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902807.1 CDS STU288_08540 NC_021151.1 1760759 1760998 R hypothetical protein complement(1760759..1760998) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902808.1 CDS pdxK NC_021151.1 1760995 1761861 R COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase complement(1760995..1761861) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902809.1 CDS STU288_08550 NC_021151.1 1761944 1763236 D COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; transcriptional regulatory protein PtsJ 1761944..1763236 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902810.1 CDS STU288_08555 NC_021151.1 1763251 1763970 D COG0518 GMP synthase - Glutamine amidotransferase domain; glutamine amidotransferase 1763251..1763970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902811.1 CDS STU288_08560 NC_021151.1 1764047 1764409 D hypothetical protein 1764047..1764409 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902812.1 CDS STU288_08565 NC_021151.1 1764422 1764961 D COG0744 Membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase 1764422..1764961 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902813.1 CDS cysM NC_021151.1 1765092 1766003 R COG0031 Cysteine synthase; cysteine synthase B complement(1765092..1766003) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902814.1 CDS STU288_08575 NC_021151.1 1766071 1767168 R COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; sulfate/thiosulfate transporter subunit complement(1766071..1767168) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902815.1 CDS cysW NC_021151.1 1767158 1768033 R COG4208 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter permease subunit complement(1767158..1768033) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902816.1 CDS STU288_08585 NC_021151.1 1768033 1768866 R COG0555 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter subunit complement(1768033..1768866) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902817.1 CDS STU288_08590 NC_021151.1 1768866 1769882 R COG4150 ABC-type sulfate transport system, periplasmic component; thiosulfate transporter subunit complement(1768866..1769882) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902818.1 CDS STU288_08595 NC_021151.1 1770040 1770831 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase complement(1770040..1770831) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902819.1 CDS STU288_08600 NC_021151.1 1771069 1771968 R COG2837 Predicted iron-dependent peroxidase; dyp-type peroxidase family protein complement(1771069..1771968) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902820.1 CDS STU288_08605 NC_021151.1 1772063 1772638 R RpoE-regulated lipoprotein complement(1772063..1772638) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902821.1 CDS STU288_08610 NC_021151.1 1772700 1773149 R hypothetical protein complement(1772700..1773149) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902822.1 CDS STU288_08615 NC_021151.1 1773136 1773561 R COG0456 Acetyltransferases; acetyltransferase complement(1773136..1773561) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902823.1 CDS STU288_08620 NC_021151.1 1773774 1774643 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase I 1773774..1774643 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902824.1 CDS STU288_08625 NC_021151.1 1774646 1775545 D COG0408 Coproporphyrinogen III oxidase; coproporphyrinogen III oxidase 1774646..1775545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902825.1 CDS STU288_08630 NC_021151.1 1775566 1775895 D putative inner membrane protein 1775566..1775895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902826.1 CDS STU288_08635 NC_021151.1 1776108 1777301 D putative cytoplasmic protein 1776108..1777301 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902827.1 CDS STU288_08640 NC_021151.1 1777501 1778553 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator EutR complement(1777501..1778553) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902828.1 CDS STU288_08645 NC_021151.1 1778601 1779095 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutK complement(1778601..1779095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902829.1 CDS STU288_08650 NC_021151.1 1779108 1779767 R COG4816 Ethanolamine utilization protein; ethanolamine utilization protein EutL complement(1779108..1779767) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902830.1 CDS STU288_08655 NC_021151.1 1779777 1780673 R COG4302 Ethanolamine ammonia-lyase, small subunit; ethanolamine ammonia-lyase small subunit complement(1779777..1780673) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902831.1 CDS STU288_08660 NC_021151.1 1780692 1782053 R COG4303 Ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia lyase large subunit complement(1780692..1782053) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902832.1 CDS eutA NC_021151.1 1782065 1783468 R COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase complement(1782065..1783468) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902833.1 CDS STU288_08670 NC_021151.1 1783465 1784691 R COG3192 Ethanolamine utilization protein; ethanolamine utilization protein EutH complement(1783465..1784691) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902834.1 CDS STU288_08675 NC_021151.1 1784811 1785998 R COG1454 Alcohol dehydrogenase, class IV; ethanol dehydrogenase EutG complement(1784811..1785998) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902835.1 CDS STU288_08680 NC_021151.1 1785988 1786827 R COG4820 Ethanolamine utilization protein, possible chaperonin; ethanolamine utilization protein EutJ complement(1785988..1786827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902836.1 CDS STU288_08685 NC_021151.1 1786838 1788241 R COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE complement(1786838..1788241) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902837.1 CDS STU288_08690 NC_021151.1 1788253 1788540 R COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; ethanolamine utilization protein eutN complement(1788253..1788540) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902838.1 CDS STU288_08695 NC_021151.1 1788653 1788943 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutM complement(1788653..1788943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902839.1 CDS eutD NC_021151.1 1788984 1790000 R COG0280 Phosphotransacetylase; phosphotransacetylase complement(1788984..1790000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902840.1 CDS STU288_08705 NC_021151.1 1789997 1790800 R COG4812 Ethanolamine utilization cobalamin adenosyltransferase; ethanolamine utilization cobalamin adenosyltransferase complement(1789997..1790800) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902841.1 CDS STU288_08710 NC_021151.1 1790797 1791486 R COG4766 Ethanolamine utilization protein; ethanolamine utilization protein EutQ complement(1790797..1791486) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902842.1 CDS STU288_08715 NC_021151.1 1791464 1791943 R COG4917 Ethanolamine utilization protein; ethanolamine utilization protein EutP complement(1791464..1791943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902843.1 CDS STU288_08720 NC_021151.1 1791956 1792291 R COG4810 Ethanolamine utilization protein; carboxysome structural protein EutS complement(1791956..1792291) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902844.1 CDS STU288_08725 NC_021151.1 1792705 1794984 R COG0281 Malic enzyme; bifunctional malic enzyme oxidoreductase/phosphotransacetylase complement(1792705..1794984) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902845.1 CDS STU288_08730 NC_021151.1 1795256 1796206 D COG0176 Transaldolase; transaldolase A 1795256..1796206 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902846.1 CDS STU288_08735 NC_021151.1 1796226 1798226 D COG0021 Transketolase; transketolase 1796226..1798226 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902847.1 CDS STU288_08740 NC_021151.1 1798289 1798519 R hypothetical protein complement(1798289..1798519) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902848.1 CDS STU288_08745 NC_021151.1 1798647 1799690 R hypothetical protein complement(1798647..1799690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902849.1 CDS STU288_08750 NC_021151.1 1799815 1800390 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose pyrophosphatase NudK complement(1799815..1800390) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902850.1 CDS STU288_08755 NC_021151.1 1800594 1801892 D COG1680 Beta-lactamase class C and other penicillin binding proteins; periplasmic esterase 1800594..1801892 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902851.1 CDS STU288_08760 NC_021151.1 1802341 1804302 R COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit complement(1802341..1804302) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902852.1 CDS STU288_08765 NC_021151.1 1804488 1806188 D COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarQ 1804488..1806188 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902853.1 CDS STU288_08770 NC_021151.1 1806373 1809486 D COG0841 Cation/multidrug efflux pump; aminoglycoside/multidrug efflux system 1806373..1809486 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902854.1 CDS STU288_08775 NC_021151.1 1810060 1810416 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; reductase 1810060..1810416 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902855.1 CDS STU288_08780 NC_021151.1 1810420 1811547 D COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 1810420..1811547 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902856.1 CDS STU288_08785 NC_021151.1 1811575 1811775 D hypothetical protein 1811575..1811775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902857.1 CDS STU288_08790 NC_021151.1 1811802 1813820 R COG1444 Predicted P-loop ATPase fused to an acetyltransferase; methionine tRNA cytidine acetyltransferase complement(1811802..1813820) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902858.1 CDS STU288_08795 NC_021151.1 1813836 1814699 R COG2321 Predicted metalloprotease; hypothetical protein complement(1813836..1814699) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902859.1 CDS STU288_08800 NC_021151.1 1814830 1815543 R COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1814830..1815543) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902860.1 CDS STU288_08805 NC_021151.1 1815718 1816752 R COG3317 Uncharacterized lipoprotein; lipoprotein complement(1815718..1816752) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902861.1 CDS STU288_08810 NC_021151.1 1816769 1817647 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(1816769..1817647) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902862.1 CDS gcvR NC_021151.1 1817793 1818365 D COG2716 Glycine cleavage system regulatory protein; glycine cleavage system transcriptional repressor 1817793..1818365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902863.1 CDS bcp NC_021151.1 1818365 1818835 D COG1225 Peroxiredoxin; thioredoxin-dependent thiol peroxidase 1818365..1818835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902864.1 CDS STU288_08825 NC_021151.1 1818882 1819235 R COG1929 Glycerate kinase; glycerate kinase complement(1818882..1819235) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902865.1 CDS STU288_08830 NC_021151.1 1819422 1820489 R COG0628 Predicted permease; putative permease perM complement(1819422..1820489) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902866.1 CDS STU288_08835 NC_021151.1 1820697 1822160 D COG4783 Putative Zn-dependent protease, contains TPR repeats; TPR repeat-containing protein YfgC 1820697..1822160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902867.1 CDS STU288_08840 NC_021151.1 1822200 1822559 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 1822200..1822559 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902868.1 CDS STU288_08845 NC_021151.1 1822586 1823311 R COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor complement(1822586..1823311) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902869.1 CDS STU288_08850 NC_021151.1 1823382 1824671 R COG2233 Xanthine/uracil permeases; uracil transporter complement(1823382..1824671) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902870.1 CDS upp NC_021151.1 1824759 1825385 R COG0035 Uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(1824759..1825385) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902871.1 CDS STU288_08860 NC_021151.1 1825799 1826836 D COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; phosphoribosylaminoimidazole synthetase 1825799..1826836 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902872.1 CDS purN NC_021151.1 1826836 1827474 D COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 1826836..1827474 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902873.1 CDS STU288_08870 NC_021151.1 1827663 1829729 D COG0855 Polyphosphate kinase; polyphosphate kinase 1827663..1829729 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902874.1 CDS STU288_08875 NC_021151.1 1829734 1831275 D COG0248 Exopolyphosphatase; exopolyphosphatase 1829734..1831275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902875.1 CDS STU288_08880 NC_021151.1 1831311 1833524 R COG2199 FOG: GGDEF domain; hypothetical protein complement(1831311..1833524) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902876.1 CDS STU288_08885 NC_021151.1 1833937 1834128 D hypothetical protein 1833937..1834128 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902877.1 CDS STU288_08890 NC_021151.1 1834669 1834998 D putative cytoplasmic protein 1834669..1834998 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902878.1 CDS STU288_08895 NC_021151.1 1835018 1835374 R COG2801 Transposase and inactivated derivatives; transposase complement(1835018..1835374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902879.1 CDS guaA NC_021151.1 1835531 1837108 R COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase complement(1835531..1837108) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902880.1 CDS STU288_08905 NC_021151.1 1837178 1838644 R COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase complement(1837178..1838644) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902881.1 CDS xseA NC_021151.1 1838805 1840154 D COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 1838805..1840154 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902882.1 CDS STU288_08915 NC_021151.1 1840316 1846426 R COG1404 Subtilisin-like serine proteases; AIDA autotransporter-like protein ShdA complement(1840316..1846426) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902883.1 CDS STU288_08920 NC_021151.1 1847028 1847141 R hypothetical protein complement(1847028..1847141) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902884.1 CDS STU288_08925 NC_021151.1 1847129 1854436 R outer membrane protein RatB complement(1847129..1854436) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902885.1 CDS STU288_08930 NC_021151.1 1854602 1860181 R outer membrane protein RatA complement(1854602..1860181) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902886.1 CDS STU288_08935 NC_021151.1 1860319 1861278 R putative outer membrane protein complement(1860319..1861278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902887.1 CDS STU288_08940 NC_021151.1 1861336 1863528 R intimin-like protein SinH complement(1861336..1863528) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902888.1 CDS STU288_08945 NC_021151.1 1863874 1864095 R hypothetical protein complement(1863874..1864095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902889.1 CDS STU288_08950 NC_021151.1 1864184 1865656 R COG1160 Predicted GTPases; GTP-binding protein Der complement(1864184..1865656) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902890.1 CDS STU288_08955 NC_021151.1 1865775 1866953 R COG1520 FOG: WD40-like repeat; outer membrane biogenesis protein BamB complement(1865775..1866953) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902891.1 CDS STU288_08960 NC_021151.1 1866964 1867584 R COG2976 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1866964..1867584) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902892.1 CDS hisS NC_021151.1 1867598 1868872 R COG0124 Histidyl-tRNA synthetase; histidyl-tRNA ligase complement(1867598..1868872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902893.1 CDS ispG NC_021151.1 1868983 1870101 R COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1868983..1870101) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902894.1 CDS STU288_08975 NC_021151.1 1870128 1871132 R COG1426 Uncharacterized protein conserved in bacteria; cytoskeletal protein RodZ complement(1870128..1871132) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902895.1 CDS STU288_08980 NC_021151.1 1871424 1872590 R COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N complement(1871424..1872590) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902896.1 CDS ndk NC_021151.1 1872797 1873228 R COG0105 Nucleoside diphosphate kinase; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase complement(1872797..1873228) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902897.1 CDS STU288_08990 NC_021151.1 1873349 1874212 R COG1145 Ferredoxin; putative polyferredoxin complement(1873349..1874212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902898.1 CDS STU288_08995 NC_021151.1 1874212 1875021 R COG3302 DMSO reductase anchor subunit; anaerobic reductase component complement(1874212..1875021) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902899.1 CDS STU288_09000 NC_021151.1 1875014 1875643 R COG0437 Fe-S-cluster-containing hydrogenase components 1; Formate dehydrogenase, iron-sulfur subunit complement(1875014..1875643) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902900.1 CDS STU288_09005 NC_021151.1 1875640 1878018 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative anaerobic dimethylsulfoxide reductase complement(1875640..1878018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902901.1 CDS STU288_09010 NC_021151.1 1878174 1880489 R COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C complement(1878174..1880489) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902902.1 CDS STU288_09015 NC_021151.1 1880490 1885424 R COG2373 Large extracellular alpha-helical protein; putative inner membrane lipoprotein complement(1880490..1885424) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902903.1 CDS sseA NC_021151.1 1885633 1886475 D COG2897 Rhodanese-related sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1885633..1886475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902904.1 CDS STU288_09025 NC_021151.1 1886612 1886734 R hypothetical protein complement(1886612..1886734) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902905.1 CDS STU288_09030 NC_021151.1 1886722 1887390 D putative cytoplasmic protein 1886722..1887390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902906.1 CDS STU288_09035 NC_021151.1 1887961 1888737 R enhanced serine sensitivity protein SseB complement(1887961..1888737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902907.1 CDS STU288_09040 NC_021151.1 1888847 1890130 R COG0260 Leucyl aminopeptidase; aminopeptidase B complement(1888847..1890130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902908.1 CDS STU288_09045 NC_021151.1 1890377 1890577 R COG2975 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1890377..1890577) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902909.1 CDS STU288_09050 NC_021151.1 1890589 1890924 R COG0633 Ferredoxin; Adrenodoxin-like protein complement(1890589..1890924) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902910.1 CDS hscA NC_021151.1 1890926 1892776 R COG0443 Molecular chaperone; chaperone protein HscA complement(1890926..1892776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902911.1 CDS hscB NC_021151.1 1892789 1893304 R COG1076 DnaJ-domain-containing proteins 1; co-chaperone HscB complement(1892789..1893304) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902912.1 CDS iscA NC_021151.1 1893500 1893823 R COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly protein complement(1893500..1893823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902913.1 CDS STU288_09070 NC_021151.1 1893852 1894238 R COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein complement(1893852..1894238) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902914.1 CDS STU288_09075 NC_021151.1 1894266 1895480 R COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase complement(1894266..1895480) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902915.1 CDS STU288_09080 NC_021151.1 1895661 1896155 R COG1959 Predicted transcriptional regulator; DNA-binding transcriptional regulator IscR complement(1895661..1896155) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902916.1 CDS STU288_09085 NC_021151.1 1896315 1897046 R COG0565 rRNA methylase; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ complement(1896315..1897046) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902917.1 CDS STU288_09090 NC_021151.1 1897165 1897968 D COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 1897165..1897968 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902918.1 CDS STU288_09095 NC_021151.1 1898113 1898991 D COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 1898113..1898991 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902919.1 CDS STU288_09100 NC_021151.1 1899173 1900216 D COG1145 Ferredoxin; anaerobic sulfite reductase subunit A 1899173..1900216 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902920.1 CDS STU288_09105 NC_021151.1 1900220 1901038 D COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; anaerobic sulfite reductase subunit B 1900220..1901038 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902921.1 CDS STU288_09110 NC_021151.1 1901049 1902062 D COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits; sulfite reductase subunit C 1901049..1902062 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902922.1 CDS STU288_09115 NC_021151.1 1902063 1903049 R COG2215 ABC-type uncharacterized transport system, permease component; inner membrane protein complement(1902063..1903049) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902923.1 CDS STU288_09120 NC_021151.1 1903040 1903678 R COG3683 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein complement(1903040..1903678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902924.1 CDS STU288_09125 NC_021151.1 1903804 1905081 D COG3711 Transcriptional antiterminator; stationary phase inducible protein CsiE 1903804..1905081 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902925.1 CDS STU288_09130 NC_021151.1 1905076 1906215 R COG0477 Permeases of the major facilitator superfamily; 3-phenylpropionic acid transporter complement(1905076..1906215) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902926.1 CDS glyA NC_021151.1 1906411 1907664 R COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase complement(1906411..1907664) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902927.1 CDS STU288_09140 NC_021151.1 1907989 1909179 D COG1017 Hemoglobin-like flavoprotein; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 1907989..1909179 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902928.1 CDS STU288_09145 NC_021151.1 1909361 1910905 D COG3710 DNA-binding winged-HTH domains; DNA-binding transcriptional activator CadC 1909361..1910905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902929.1 CDS cadB NC_021151.1 1911266 1912597 D COG0531 Amino acid transporters; lysine/cadaverine antiporter 1911266..1912597 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902930.1 CDS STU288_09155 NC_021151.1 1912680 1914824 D COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase CadA 1912680..1914824 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902931.1 CDS STU288_09160 NC_021151.1 1914880 1916340 D COG3104 Dipeptide/tripeptide permease; Inner membrane transporter ybgH 1914880..1916340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902932.1 CDS STU288_09165 NC_021151.1 1916389 1916727 R COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 1 complement(1916389..1916727) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902933.1 CDS STU288_09170 NC_021151.1 1916804 1918141 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator GlrR complement(1916804..1918141) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902934.1 CDS STU288_09175 NC_021151.1 1918138 1918824 R hypothetical protein complement(1918138..1918824) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902935.1 CDS STU288_09180 NC_021151.1 1918904 1920334 R COG0642 Signal transduction histidine kinase; sensory histidine kinase GlrK complement(1918904..1920334) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902936.1 CDS STU288_09185 NC_021151.1 1920984 1924868 R COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase complement(1920984..1924868) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902937.1 CDS STU288_09190 NC_021151.1 1925127 1926671 D COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; membrane-bound lytic transglycosylase F 1925127..1926671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902938.1 CDS STU288_09195 NC_021151.1 1926722 1927273 R COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase complement(1926722..1927273) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902939.1 CDS STU288_09200 NC_021151.1 1927298 1927933 R COG0560 Phosphoserine phosphatase; hypothetical protein complement(1927298..1927933) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902940.1 CDS STU288_09205 NC_021151.1 1927937 1929298 R COG1264 Phosphotransferase system IIB components; PTS system transporter subunit EIIC complement(1927937..1929298) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902941.1 CDS murQ NC_021151.1 1929309 1930202 R COG2103 Predicted sugar phosphate isomerase; N-acetylmuramic acid-6-phosphate etherase complement(1929309..1930202) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902942.1 CDS STU288_09215 NC_021151.1 1930318 1931166 D COG1737 Transcriptional regulators; DNA-binding transcriptional regulator 1930318..1931166 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902943.1 CDS STU288_09220 NC_021151.1 1931205 1932122 R COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(1931205..1932122) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902944.1 CDS STU288_09225 NC_021151.1 1932144 1933340 R COG0477 Permeases of the major facilitator superfamily; Major Facilitator Superfamily protein complement(1932144..1933340) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902945.1 CDS STU288_09230 NC_021151.1 1933456 1934382 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 1933456..1934382 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902946.1 CDS STU288_09235 NC_021151.1 1934420 1934680 D COG1145 Ferredoxin; 4Fe-4S ferredoxin 1934420..1934680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902947.1 CDS acpS NC_021151.1 1934792 1935172 R COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase complement(1934792..1935172) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902948.1 CDS STU288_09245 NC_021151.1 1935172 1935903 R COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase complement(1935172..1935903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902949.1 CDS recO NC_021151.1 1935915 1936643 R COG1381 Recombinational DNA repair protein (RecF pathway); DNA repair protein RecO complement(1935915..1936643) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902950.1 CDS era NC_021151.1 1936655 1937560 R COG1159 GTPase; GTPase Era complement(1936655..1937560) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902951.1 CDS rnc NC_021151.1 1937557 1938237 R COG0571 dsRNA-specific ribonuclease; ribonuclease III complement(1937557..1938237) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902952.1 CDS STU288_09265 NC_021151.1 1938511 1939485 R COG0681 Signal peptidase I; signal peptidase I complement(1938511..1939485) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902953.1 CDS STU288_09270 NC_021151.1 1939502 1941301 R COG0481 Membrane GTPase LepA; GTP-binding protein LepA complement(1939502..1941301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902954.1 CDS STU288_09275 NC_021151.1 1942152 1942295 R hypothetical protein complement(1942152..1942295) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902955.1 CDS STU288_09280 NC_021151.1 1942304 1943200 D type III secretion protein GogB 1942304..1943200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902956.1 CDS STU288_09285 NC_021151.1 1943404 1943532 R hypothetical protein complement(1943404..1943532) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902957.1 CDS STU288_09290 NC_021151.1 1944529 1944693 R COG2801 Transposase and inactivated derivatives; hypothetical protein complement(1944529..1944693) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902958.1 CDS STU288_09295 NC_021151.1 1945401 1945613 R putative prophage protein complement(1945401..1945613) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902959.1 CDS STU288_09300 NC_021151.1 1946044 1946622 R hypothetical protein complement(1946044..1946622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902960.1 CDS STU288_09305 NC_021151.1 1946612 1947436 R COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Poly [ADP-ribose] polymerase 9 PARP-9 complement(1946612..1947436) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902961.1 CDS STU288_09310 NC_021151.1 1947433 1949805 R side tail fiber protein complement(1947433..1949805) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902962.1 CDS STU288_09315 NC_021151.1 1949859 1950101 R hypothetical protein complement(1949859..1950101) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902963.1 CDS STU288_09320 NC_021151.1 1950140 1953502 R COG4733 Phage-related protein, tail component; host specificity protein complement(1950140..1953502) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902964.1 CDS STU288_09325 NC_021151.1 1953564 1954211 R COG4723 Phage-related protein, tail component; Tail assembly protein I complement(1953564..1954211) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902965.1 CDS STU288_09330 NC_021151.1 1954109 1954744 R COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; putative phage tail fiber protein K complement(1954109..1954744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902966.1 CDS STU288_09335 NC_021151.1 1954853 1955551 R COG4672 Phage-related protein; phage tail component L-like protein complement(1954853..1955551) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902967.1 CDS STU288_09340 NC_021151.1 1955561 1955890 R COG4718 Phage-related protein; Minor tail protein M complement(1955561..1955890) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902968.1 CDS STU288_09345 NC_021151.1 1955893 1958988 R COG5281 Phage-related minor tail protein; gifsy-1 prophage VmtH complement(1955893..1958988) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902969.1 CDS STU288_09350 NC_021151.1 1958960 1959274 R minor tail-like protein complement(1958960..1959274) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902970.1 CDS STU288_09355 NC_021151.1 1959295 1959690 R Minor tail protein G complement(1959295..1959690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902971.1 CDS STU288_09360 NC_021151.1 1959741 1960484 R COG5492 Bacterial surface proteins containing Ig-like domains; bacteriophage protein complement(1959741..1960484) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902972.1 CDS STU288_09365 NC_021151.1 1960495 1960896 R Minor tail protein U complement(1960495..1960896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902973.1 CDS STU288_09370 NC_021151.1 1961005 1962135 D COG0675 Transposase and inactivated derivatives; putative 45.4 kDa protein in snaA-snaB intergenic region 1961005..1962135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902974.1 CDS STU288_09375 NC_021151.1 1962184 1962762 R Minor tail protein Z GpZ complement(1962184..1962762) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902975.1 CDS STU288_09380 NC_021151.1 1962790 1963173 R minor capsid protein FII complement(1962790..1963173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902976.1 CDS STU288_09385 NC_021151.1 1963184 1963543 R putative 13.5 kDa protein in GP7-GP8 intergenic region complement(1963184..1963543) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902977.1 CDS STU288_09390 NC_021151.1 1963601 1964629 R P21 prophage-derived major head protein Head protein gp7 complement(1963601..1964629) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902978.1 CDS STU288_09395 NC_021151.1 1964684 1965031 R bacteriophage lambda head decoration protein D complement(1964684..1965031) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902979.1 CDS STU288_09400 NC_021151.1 1965044 1966540 R COG0616 Periplasmic serine proteases (ClpP class); Head-tail preconnector protein GP5 complement(1965044..1966540) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902980.1 CDS STU288_09405 NC_021151.1 1966530 1968110 R COG5511 Bacteriophage capsid protein; phage portal protein, lambda family complement(1966530..1968110) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902981.1 CDS STU288_09410 NC_021151.1 1968107 1968310 R Lambda prophage-derived head-to-tail joining protein W gpW complement(1968107..1968310) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902982.1 CDS STU288_09415 NC_021151.1 1968294 1970225 R COG5525 Bacteriophage tail assembly protein; Terminase large subunit Gp2 complement(1968294..1970225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902983.1 CDS STU288_09420 NC_021151.1 1970197 1970742 R COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; P21 prophage-derived terminase small subunit Gp1 complement(1970197..1970742) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902984.1 CDS STU288_09425 NC_021151.1 1971029 1971430 D hypothetical protein 1971029..1971430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902985.1 CDS STU288_09430 NC_021151.1 1971666 1972145 R putative endopeptidase complement(1971666..1972145) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902986.1 CDS STU288_09435 NC_021151.1 1972142 1972591 R COG3772 Phage-related lysozyme (muraminidase); morphogenesis-like protein complement(1972142..1972591) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902987.1 CDS STU288_09440 NC_021151.1 1972578 1972913 R putative bacteriophage holin complement(1972578..1972913) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902988.1 CDS STU288_09445 NC_021151.1 1973183 1973863 D hypothetical protein 1973183..1973863 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902989.1 CDS STU288_09450 NC_021151.1 1973890 1974075 R COG3436 Transposase and inactivated derivatives; hypothetical protein complement(1973890..1974075) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902990.1 CDS STU288_09455 NC_021151.1 1974183 1975460 R COG3436 Transposase and inactivated derivatives; hypothetical protein complement(1974183..1975460) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902991.1 CDS STU288_09460 NC_021151.1 1975480 1975827 R COG3436 Transposase and inactivated derivatives; putative transposase subunit complement(1975480..1975827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902992.1 CDS STU288_09465 NC_021151.1 1975827 1976504 R COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA complement(1975827..1976504) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902993.1 CDS STU288_09470 NC_021151.1 1976790 1976978 R hypothetical protein complement(1976790..1976978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902994.1 CDS STU288_09475 NC_021151.1 1977485 1978048 R antirepressor-like protein complement(1977485..1978048) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902995.1 CDS STU288_09480 NC_021151.1 1978321 1978998 R Antitermination protein Q complement(1978321..1978998) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902996.1 CDS STU288_09485 NC_021151.1 1978995 1979135 R Gifsy-1 prophage protein complement(1978995..1979135) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902997.1 CDS STU288_09490 NC_021151.1 1979132 1979743 R Protein ninG complement(1979132..1979743) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902998.1 CDS STU288_09495 NC_021151.1 1979952 1980572 R hypothetical protein complement(1979952..1980572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007902999.1 CDS STU288_09500 NC_021151.1 1980969 1981202 R COG1344 Flagellin and related hook-associated proteins; DNA-damage-inducible protein I complement(1980969..1981202) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903000.1 CDS STU288_09505 NC_021151.1 1981494 1981763 R hypothetical protein complement(1981494..1981763) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903001.1 CDS STU288_09510 NC_021151.1 1981862 1982173 R conserved hypothetical bacteriophage protein complement(1981862..1982173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903002.1 CDS STU288_09515 NC_021151.1 1982170 1982517 R putative DNA-binding protein complement(1982170..1982517) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903003.1 CDS STU288_09520 NC_021151.1 1982528 1983277 R COG1484 DNA replication protein; replication protein complement(1982528..1983277) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903004.1 CDS STU288_09525 NC_021151.1 1983280 1984263 R gifsy-1 prophage PrpO complement(1983280..1984263) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903005.1 CDS STU288_09530 NC_021151.1 1984348 1984497 R Gifsy-1 prophage cI protein complement(1984348..1984497) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903006.1 CDS STU288_09535 NC_021151.1 1984688 1984927 R hypothetical protein complement(1984688..1984927) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903007.1 CDS STU288_09540 NC_021151.1 1985041 1985457 D COG1396 Predicted transcriptional regulators; regulatory protein 1985041..1985457 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903008.1 CDS STU288_09545 NC_021151.1 1985760 1985921 D Gifsy-1 prophage protein 1985760..1985921 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903009.1 CDS STU288_09550 NC_021151.1 1985939 1986289 D hypothetical protein 1985939..1986289 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903010.1 CDS STU288_09555 NC_021151.1 1986416 1989343 D COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; gifsy-1 prophage RecE 1986416..1989343 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903011.1 CDS STU288_09560 NC_021151.1 1989354 1990463 D Gifsy-2 prophage RecT 1989354..1990463 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903012.1 CDS STU288_09565 NC_021151.1 1990506 1990745 D putative cytoplasmic protein 1990506..1990745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903013.1 CDS STU288_09570 NC_021151.1 1990786 1991034 D excisionase 1990786..1991034 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903014.1 CDS STU288_09575 NC_021151.1 1991079 1992371 D COG0582 Integrase; bacteriophage integrase 1991079..1992371 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903015.1 CDS STU288_09580 NC_021151.1 1992566 1993768 D COG1488 Nicotinic acid phosphoribosyltransferase; nicotinate phosphoribosyltransferase 1992566..1993768 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903016.1 CDS STU288_09585 NC_021151.1 1993846 1995282 R COG1115 Na+/alanine symporter; ion:amino acid symporter complement(1993846..1995282) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903017.1 CDS STU288_09590 NC_021151.1 1995527 1996741 R COG1171 Threonine dehydratase; diaminopropionate ammonia-lyase complement(1995527..1996741) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903018.1 CDS STU288_09595 NC_021151.1 1996828 1997061 D hypothetical protein 1996828..1997061 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903019.1 CDS STU288_09600 NC_021151.1 1997058 1997519 D COG1522 Transcriptional regulators; putative HTH-type transcriptional regulator ybaO 1997058..1997519 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903020.1 CDS asnC NC_021151.1 1997720 1999120 D COG0017 Aspartyl/asparaginyl-tRNA synthetases; asparaginyl-tRNA ligase 1997720..1999120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903021.1 CDS STU288_09610 NC_021151.1 1999727 2000818 D COG3203 Outer membrane protein (porin); outer membrane protein F 1999727..2000818 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903022.1 CDS STU288_09615 NC_021151.1 2001003 2002193 D COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 2001003..2002193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903023.1 CDS STU288_09620 NC_021151.1 2002255 2002902 R COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase complement(2002255..2002902) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903024.1 CDS STU288_09625 NC_021151.1 2002930 2003478 R COG3108 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2002930..2003478) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903025.1 CDS STU288_09630 NC_021151.1 2003738 2005579 R COG2989 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase complement(2003738..2005579) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903026.1 CDS mukB NC_021151.1 2005924 2010390 R COG3096 Uncharacterized protein involved in chromosome partitioning; cell division protein MukB complement(2005924..2010390) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903027.1 CDS STU288_09640 NC_021151.1 2010390 2011094 R COG3095 Uncharacterized protein involved in chromosome partitioning; condesin subunit E complement(2010390..2011094) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903028.1 CDS STU288_09645 NC_021151.1 2011075 2012397 R COG3006 Uncharacterized protein involved in chromosome partitioning; condesin subunit F complement(2011075..2012397) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903029.1 CDS STU288_09650 NC_021151.1 2012390 2013193 R COG0500 SAM-dependent methyltransferases; S-adenosyl-L-methionine-dependent methyltransferase complement(2012390..2013193) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903030.1 CDS STU288_09655 NC_021151.1 2013329 2014105 D COG1434 Uncharacterized conserved protein; hypothetical protein 2013329..2014105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903031.1 CDS STU288_09660 NC_021151.1 2014085 2014978 R hypothetical protein complement(2014085..2014978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903032.1 CDS STU288_09665 NC_021151.1 2015189 2015935 R COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2015189..2015935) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903033.1 CDS STU288_09670 NC_021151.1 2015932 2016114 R COG2835 Uncharacterized conserved protein; hypothetical protein complement(2015932..2016114) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903034.1 CDS STU288_09675 NC_021151.1 2016166 2017398 R COG3214 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2016166..2017398) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903035.1 CDS lpxK NC_021151.1 2017442 2018419 R COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(2017442..2018419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903036.1 CDS STU288_09685 NC_021151.1 2018416 2020164 R COG1132 ABC-type multidrug transport system, ATPase and permease components; lipid transporter ATP-binding/permease protein complement(2018416..2020164) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903037.1 CDS STU288_09690 NC_021151.1 2020201 2022465 R COG0658 Predicted membrane metal-binding protein; ComEC family competence protein complement(2020201..2022465) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903038.1 CDS ihfB NC_021151.1 2022695 2022979 R COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit beta complement(2022695..2022979) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903039.1 CDS rpsA NC_021151.1 2023135 2024808 R COG0539 Ribosomal protein S1; 30S ribosomal protein S1 complement(2023135..2024808) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903040.1 CDS cmk NC_021151.1 2024922 2025605 R COG0283 Cytidylate kinase; cytidylate kinase complement(2024922..2025605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903041.1 CDS STU288_09710 NC_021151.1 2025778 2026539 R COG0501 Zn-dependent protease with chaperone function; lipoprotein complement(2025778..2026539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903042.1 CDS STU288_09715 NC_021151.1 2026682 2027965 R COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2026682..2027965) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903043.1 CDS STU288_09720 NC_021151.1 2028036 2029124 R COG1932 Phosphoserine aminotransferase; 3-phosphoserine/phosphohydroxythreonine aminotransferase complement(2028036..2029124) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903044.1 CDS STU288_09725 NC_021151.1 2029310 2030002 R COG2323 Predicted membrane protein; hypothetical protein complement(2029310..2030002) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903045.1 CDS STU288_09730 NC_021151.1 2030139 2031899 D COG1944 Uncharacterized conserved protein; hypothetical protein 2030139..2031899 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903046.1 CDS STU288_09735 NC_021151.1 2032304 2033161 D COG2116 Formate/nitrite family of transporters; formate transporter 2032304..2033161 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903047.1 CDS STU288_09740 NC_021151.1 2033221 2035503 D COG1882 Pyruvate-formate lyase; pyruvate formate-lyase 2033221..2035503 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903048.1 CDS STU288_09745 NC_021151.1 2035579 2036538 R pathogenicity island 1 protein SopD2 complement(2035579..2036538) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903049.1 CDS STU288_09750 NC_021151.1 2036828 2036995 D hypothetical protein 2036828..2036995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903050.1 CDS pflA NC_021151.1 2037114 2037911 D COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase-activating enzyme 1 2037114..2037911 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903051.1 CDS STU288_09760 NC_021151.1 2038204 2039625 R COG0531 Amino acid transporters; transport protein complement(2038204..2039625) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903052.1 CDS STU288_09765 NC_021151.1 2039843 2040991 R COG0477 Permeases of the major facilitator superfamily; MFS family transporter protein complement(2039843..2040991) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903053.1 CDS STU288_09770 NC_021151.1 2041341 2042204 R COG3302 DMSO reductase anchor subunit; Anaerobic dimethyl sulfoxide reductase chain C DMSO reductase anchor subunit complement(2041341..2042204) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903054.1 CDS STU288_09775 NC_021151.1 2042206 2042823 R COG0437 Fe-S-cluster-containing hydrogenase components 1; dimethylsulfoxide reductase subunit B complement(2042206..2042823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903055.1 CDS STU288_09780 NC_021151.1 2042834 2045278 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase subunit A complement(2042834..2045278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903056.1 CDS STU288_09785 NC_021151.1 2045515 2046807 R COG0172 Seryl-tRNA synthetase; seryl-tRNA ligase complement(2045515..2046807) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903057.1 CDS STU288_09790 NC_021151.1 2047066 2048409 R COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA complement(2047066..2048409) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903058.1 CDS lolA NC_021151.1 2048419 2049030 R COG2834 Outer membrane lipoprotein-sorting protein; lipoprotein chaperone complement(2048419..2049030) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903059.1 CDS STU288_09800 NC_021151.1 2049173 2053228 R COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase FtsK complement(2049173..2053228) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903060.1 CDS STU288_09805 NC_021151.1 2053363 2053857 R COG1522 Transcriptional regulators; leucine-responsive transcriptional regulator complement(2053363..2053857) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903061.1 CDS STU288_09810 NC_021151.1 2054403 2055371 D COG0492 Thioredoxin reductase; thioredoxin reductase 2054403..2055371 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903062.1 CDS STU288_09815 NC_021151.1 2055485 2057251 D COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 2055485..2057251 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903063.1 CDS STU288_09820 NC_021151.1 2057252 2058973 D COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 2057252..2058973 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903064.1 CDS aat NC_021151.1 2059018 2059722 D COG2360 Leu/Phe-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase 2059018..2059722 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903065.1 CDS STU288_09830 NC_021151.1 2060034 2060252 D COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 2060034..2060252 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903066.1 CDS STU288_09835 NC_021151.1 2060343 2061254 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2060343..2061254) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903067.1 CDS STU288_09840 NC_021151.1 2061363 2062223 D COG1741 Pirin-related protein; Cupin/Pirin 2061363..2062223 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903068.1 CDS STU288_09845 NC_021151.1 2062243 2062920 D COG1335 Amidases related to nicotinamidase; hypothetical protein 2062243..2062920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903069.1 CDS STU288_09850 NC_021151.1 2063257 2063658 D ISPsy11, transposase OrfA 2063257..2063658 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903070.1 CDS STU288_09855 NC_021151.1 2063829 2064512 D COG2801 Transposase and inactivated derivatives; integrase protein 2063829..2064512 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903071.1 CDS STU288_09860 NC_021151.1 2064975 2065433 R COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 complement(2064975..2065433) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903072.1 CDS clpA NC_021151.1 2065625 2067901 R COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit complement(2065625..2067901) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903073.1 CDS clpS NC_021151.1 2067932 2068252 R COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adaptor protein ClpS complement(2067932..2068252) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903074.1 CDS STU288_09875 NC_021151.1 2068576 2068797 D COG1278 Cold shock proteins; cold shock-like protein CspD 2068576..2068797 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903075.1 CDS STU288_09880 NC_021151.1 2068927 2070873 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; macrolide transporter ATP-binding /permease protein complement(2068927..2070873) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903076.1 CDS STU288_09885 NC_021151.1 2070870 2071988 R COG0845 Membrane-fusion protein; macrolide transporter subunit MacA complement(2070870..2071988) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903077.1 CDS STU288_09890 NC_021151.1 2072134 2073084 D COG2990 Uncharacterized protein conserved in bacteria; hypothetical protein 2072134..2073084 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903078.1 CDS STU288_09895 NC_021151.1 2073081 2074739 R COG3593 Predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease complement(2073081..2074739) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903079.1 CDS STU288_09900 NC_021151.1 2074941 2075840 D COG2431 Predicted membrane protein; hypothetical protein 2074941..2075840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903080.1 CDS STU288_09905 NC_021151.1 2075984 2077636 D COG1151 6Fe-6S prismane cluster-containing protein; hybrid cluster protein 2075984..2077636 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903081.1 CDS STU288_09910 NC_021151.1 2077648 2078616 D COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; HCP oxidoreductase, NADH-dependent 2077648..2078616 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903082.1 CDS STU288_09915 NC_021151.1 2078774 2080492 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate dehydrogenase 2078774..2080492 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903083.1 CDS STU288_09920 NC_021151.1 2080531 2081532 D COG2008 Threonine aldolase; L-threonine aldolase 2080531..2081532 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903084.1 CDS STU288_09925 NC_021151.1 2081543 2082976 D COG0702 Predicted nucleoside-diphosphate-sugar epimerases; Atypical SDR 2081543..2082976 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903085.1 CDS STU288_09930 NC_021151.1 2083072 2084085 D COG0451 Nucleoside-diphosphate-sugar epimerases; 3 beta-hydroxysteroid dehydrogenase/Delta 5->4-isomerase type 1 3-beta-HSD I 2083072..2084085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903086.1 CDS STU288_09935 NC_021151.1 2084082 2084912 R COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase AmiD complement(2084082..2084912) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903087.1 CDS STU288_09940 NC_021151.1 2084909 2085232 R COG0393 Uncharacterized conserved protein; hypothetical protein complement(2084909..2085232) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903088.1 CDS STU288_09945 NC_021151.1 2085360 2085875 D lipoprotein 2085360..2085875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903089.1 CDS artP NC_021151.1 2086105 2086833 D COG4161 ABC-type arginine transport system, ATPase component; arginine transporter ATP-binding subunit 2086105..2086833 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903090.1 CDS STU288_09955 NC_021151.1 2086851 2087582 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter arginine-biding protein 2086851..2087582 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903091.1 CDS STU288_09960 NC_021151.1 2087589 2088305 D COG4215 ABC-type arginine transport system, permease component; arginine transporter permease subunit ArtQ 2087589..2088305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903092.1 CDS artM NC_021151.1 2088305 2088973 D COG4160 ABC-type arginine/histidine transport system, permease component; arginine transporter permease subunit ArtM 2088305..2088973 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903093.1 CDS STU288_09970 NC_021151.1 2089210 2089941 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter periplasmic arginine-binding protein ArtJ 2089210..2089941 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903094.1 CDS STU288_09975 NC_021151.1 2090160 2091647 R COG3119 Arylsulfatase A and related enzymes; sulfatase complement(2090160..2091647) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903095.1 CDS STU288_09980 NC_021151.1 2091657 2091977 R COG3414 Phosphotransferase system, galactitol-specific IIB component; putative phosphotransferase enzyme II, B component complement(2091657..2091977) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903096.1 CDS STU288_09985 NC_021151.1 2092007 2093350 R COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC complement(2092007..2093350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903097.1 CDS rumB NC_021151.1 2093633 2094763 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase complement(2093633..2094763) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903098.1 CDS STU288_09995 NC_021151.1 2094806 2095279 R hypothetical protein complement(2094806..2095279) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903099.1 CDS STU288_10000 NC_021151.1 2095353 2096198 R COG1177 ABC-type spermidine/putrescine transport system, permease component II; putrescine transporter subunit: membrane component of ABC superfamily complement(2095353..2096198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903100.1 CDS STU288_10005 NC_021151.1 2096195 2097148 R COG1176 ABC-type spermidine/putrescine transport system, permease component I; putrescine transporter subunit: membrane component of ABC superfamily complement(2096195..2097148) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903101.1 CDS potG NC_021151.1 2097158 2098291 R COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine transporter ATP-binding subunit complement(2097158..2098291) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903102.1 CDS STU288_10015 NC_021151.1 2098379 2099491 R COG0687 Spermidine/putrescine-binding periplasmic protein; putrescine transporter subunit: periplasmic-binding component of ABC superfamily complement(2098379..2099491) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903103.1 CDS STU288_10020 NC_021151.1 2099840 2100316 R hypothetical protein complement(2099840..2100316) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903104.1 CDS STU288_10025 NC_021151.1 2100413 2101315 R COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); ribosomal protein S6 modification protein complement(2100413..2101315) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903105.1 CDS STU288_10030 NC_021151.1 2101373 2102095 R COG0778 Nitroreductase; nitroreductase A complement(2101373..2102095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903106.1 CDS STU288_10035 NC_021151.1 2102079 2102369 R hypothetical protein complement(2102079..2102369) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903107.1 CDS grxA NC_021151.1 2102539 2102802 D COG0695 Glutaredoxin and related proteins; glutaredoxin 1 2102539..2102802 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903108.1 CDS STU288_10045 NC_021151.1 2102834 2103211 R Inner membrane protein ybjM complement(2102834..2103211) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903109.1 CDS STU288_10050 NC_021151.1 2103482 2105167 D COG2985 Predicted permease; transporter 2103482..2105167 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903110.1 CDS STU288_10055 NC_021151.1 2105284 2105904 R COG3226 Uncharacterized protein conserved in bacteria; tetR-family transcriptional regulator complement(2105284..2105904) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903111.1 CDS STU288_10060 NC_021151.1 2106072 2107283 D COG0477 Permeases of the major facilitator superfamily; putative transport protein/regulator 2106072..2107283 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903112.1 CDS STU288_10065 NC_021151.1 2107280 2108095 D COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein 2107280..2108095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903113.1 CDS STU288_10070 NC_021151.1 2108149 2109381 R COG0477 Permeases of the major facilitator superfamily; multidrug efflux system translocase MdfA complement(2108149..2109381) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903114.1 CDS STU288_10075 NC_021151.1 2109694 2110302 D COG0671 Membrane-associated phospholipid phosphatase; undecaprenyl pyrophosphate phosphatase 2109694..2110302 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903115.1 CDS STU288_10080 NC_021151.1 2110374 2111132 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor DeoR 2110374..2111132 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903116.1 CDS STU288_10085 NC_021151.1 2111177 2112379 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction C complement(2111177..2112379) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903117.1 CDS STU288_10090 NC_021151.1 2112623 2113249 D COG0625 Glutathione S-transferase; Glutathione S-transferase 1-1 GST class-theta 2112623..2113249 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903118.1 CDS STU288_10095 NC_021151.1 2113246 2113926 R COG3677 Transposase and inactivated derivatives; hypothetical protein complement(2113246..2113926) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903119.1 CDS STU288_10100 NC_021151.1 2114273 2114698 D COG2610 H+/gluconate symporter and related permeases; inner membrane protein 2114273..2114698 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903120.1 CDS STU288_10105 NC_021151.1 2114963 2115853 D COG0583 Transcriptional regulator; LysR transcriptional regulator 2114963..2115853 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903121.1 CDS STU288_10110 NC_021151.1 2115859 2117544 R COG0644 Dehydrogenases (flavoproteins); Electron transfer flavoprotein-ubiquinone oxidoreductase complement(2115859..2117544) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903122.1 CDS STU288_10115 NC_021151.1 2117993 2119156 R COG1960 Acyl-CoA dehydrogenases; putative acyl-CoA dehydrogenase complement(2117993..2119156) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903123.1 CDS STU288_10120 NC_021151.1 2119220 2119417 R hypothetical protein complement(2119220..2119417) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903124.1 CDS STU288_10125 NC_021151.1 2119450 2120397 R COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(2119450..2120397) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903125.1 CDS STU288_10130 NC_021151.1 2120408 2121157 R COG2086 Electron transfer flavoprotein, beta subunit; putative electron transfer protein beta subunit complement(2120408..2121157) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903126.1 CDS STU288_10135 NC_021151.1 2121180 2121695 R COG2301 Citrate lyase beta subunit; citrate lyase complement(2121180..2121695) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903127.1 CDS bssR NC_021151.1 2122408 2122791 R biofilm formation regulatory protein BssR complement(2122408..2122791) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903128.1 CDS rimO NC_021151.1 2123022 2124347 D COG0621 2-methylthioadenine synthetase; ribosomal protein S12 methylthiotransferase 2123022..2124347 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903129.1 CDS STU288_10150 NC_021151.1 2124438 2125349 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiD complement(2124438..2125349) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903130.1 CDS STU288_10155 NC_021151.1 2125352 2126272 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiC complement(2125352..2126272) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903131.1 CDS STU288_10160 NC_021151.1 2126333 2127871 R COG0747 ABC-type dipeptide transport system, periplasmic component; glutathione ABC transporter substrate-binding protein GsiB complement(2126333..2127871) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903132.1 CDS STU288_10165 NC_021151.1 2127904 2129775 R COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; glutathione transporter ATP-binding protein complement(2127904..2129775) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903133.1 CDS STU288_10170 NC_021151.1 2129786 2130727 R COG1446 Asparaginase; isoaspartyl peptidase complement(2129786..2130727) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903134.1 CDS STU288_10175 NC_021151.1 2130930 2132165 D COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein MoeA 2130930..2132165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903135.1 CDS STU288_10180 NC_021151.1 2132165 2132914 D COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; molybdopterin biosynthesis protein MoeB 2132165..2132914 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903136.1 CDS STU288_10185 NC_021151.1 2133192 2134091 D COG1180 Pyruvate-formate lyase-activating enzyme; glycyl-radical enzyme activating protein family 2133192..2134091 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903137.1 CDS STU288_10190 NC_021151.1 2134097 2136529 D COG1882 Pyruvate-formate lyase; formate acetyltransferase 3 2134097..2136529 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903138.1 CDS STU288_10195 NC_021151.1 2136607 2137416 R COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase SupH complement(2136607..2137416) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903139.1 CDS STU288_10200 NC_021151.1 2137678 2138943 D hypothetical protein 2137678..2138943 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903140.1 CDS STU288_10205 NC_021151.1 2139223 2139438 R hypothetical protein complement(2139223..2139438) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903141.1 CDS STU288_10210 NC_021151.1 2139427 2139867 D COG0561 Predicted hydrolases of the HAD superfamily; putative hydrolase 2139427..2139867 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903142.1 CDS STU288_10215 NC_021151.1 2139896 2140792 R hypothetical protein complement(2139896..2140792) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903143.1 CDS STU288_10220 NC_021151.1 2141248 2142840 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(2141248..2142840) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903144.1 CDS STU288_10225 NC_021151.1 2143059 2143979 D COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 2143059..2143979 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903145.1 CDS STU288_10230 NC_021151.1 2144023 2145135 R COG0471 Di- and tricarboxylate transporters; hypothetical protein complement(2144023..2145135) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903146.1 CDS STU288_10235 NC_021151.1 2145132 2145605 R COG1321 Mn-dependent transcriptional regulator; manganese transport regulator MntR complement(2145132..2145605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903147.1 CDS STU288_10240 NC_021151.1 2145848 2146018 R hypothetical protein complement(2145848..2146018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903148.1 CDS STU288_10245 NC_021151.1 2146184 2147764 D COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 2146184..2147764 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903149.1 CDS ompX NC_021151.1 2147827 2148342 R COG3637 Opacity protein and related surface antigens; outer membrane protein X complement(2147827..2148342) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903150.1 CDS STU288_10255 NC_021151.1 2148696 2149583 D COG5006 Predicted permease, DMT superfamily; threonine and homoserine efflux system 2148696..2149583 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903151.1 CDS STU288_10260 NC_021151.1 2149886 2150389 D COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); DNA starvation/stationary phase protection protein Dps 2149886..2150389 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903152.1 CDS glnH NC_021151.1 2150866 2151612 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter periplasmic protein 2150866..2151612 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903153.1 CDS glnP NC_021151.1 2151756 2152415 D COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter permease protein 2151756..2152415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903154.1 CDS glnQ NC_021151.1 2152412 2153134 D COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein 2152412..2153134 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903155.1 CDS STU288_10280 NC_021151.1 2153253 2155475 D COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel protein 2153253..2155475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903156.1 CDS STU288_10285 NC_021151.1 2155472 2156398 R COG3129 Predicted SAM-dependent methyltransferase; 23S rRNA mA1618 methyltransferase complement(2155472..2156398) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903157.1 CDS STU288_10290 NC_021151.1 2156603 2156869 D COG1734 DnaK suppressor protein; hypothetical protein 2156603..2156869 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903158.1 CDS STU288_10295 NC_021151.1 2157154 2157414 D hypothetical protein 2157154..2157414 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903159.1 CDS STU288_10300 NC_021151.1 2157570 2158544 R COG0547 Anthranilate phosphoribosyltransferase; glycosyl transferase family protein complement(2157570..2158544) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903160.1 CDS dinG NC_021151.1 2158574 2160718 R COG1199 Rad3-related DNA helicases; ATP-dependent DNA helicase DinG complement(2158574..2160718) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903161.1 CDS STU288_10310 NC_021151.1 2160926 2162290 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE complement(2160926..2162290) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903162.1 CDS STU288_10315 NC_021151.1 2162520 2163194 D COG1309 Transcriptional regulator; DNA-binding transcriptional regulator 2162520..2163194 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903163.1 CDS STU288_10320 NC_021151.1 2163194 2164189 D COG0845 Membrane-fusion protein; efflux pump membrane fusion protein 2163194..2164189 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903164.1 CDS STU288_10325 NC_021151.1 2164182 2165918 D COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter multidrug efflux pump, fused ATP-binding domains 2164182..2165918 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903165.1 CDS STU288_10330 NC_021151.1 2165911 2167041 D COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease YbhS 2165911..2167041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903166.1 CDS STU288_10335 NC_021151.1 2167157 2168263 D COG0842 ABC-type multidrug transport system, permease component; ABC transporter G family member 20 2167157..2168263 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903167.1 CDS STU288_10340 NC_021151.1 2168225 2168635 R putative inner membrane protein complement(2168225..2168635) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903168.1 CDS STU288_10345 NC_021151.1 2168768 2169526 D COG3568 Metal-dependent hydrolase; hypothetical protein 2168768..2169526 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903169.1 CDS STU288_10350 NC_021151.1 2169523 2170764 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthase 2 2169523..2170764 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903170.1 CDS STU288_10355 NC_021151.1 2170764 2171726 D COG0392 Predicted integral membrane protein; hypothetical protein 2170764..2171726 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903171.1 CDS STU288_10360 NC_021151.1 2171729 2172289 R inner membrane protein complement(2171729..2172289) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903172.1 CDS STU288_10365 NC_021151.1 2172297 2172896 R putative inner membrane protein complement(2172297..2172896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903173.1 CDS STU288_10370 NC_021151.1 2172929 2173636 R COG0670 Integral membrane protein, interacts with FtsH; putative integral membrane protein complement(2172929..2173636) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903174.1 CDS STU288_10375 NC_021151.1 2173783 2174487 R COG0670 Integral membrane protein, interacts with FtsH; Glutamate [NMDA] receptor-associated protein 1 NMDA receptor glutamate-binding subunit complement(2173783..2174487) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903175.1 CDS moaE NC_021151.1 2174535 2174987 R COG0314 Molybdopterin converting factor, large subunit; molybdopterin guanine dinucleotide biosynthesis protein MoaE complement(2174535..2174987) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903176.1 CDS moaD NC_021151.1 2174989 2175234 R COG1977 Molybdopterin converting factor, small subunit; molybdopterin synthase small subunit complement(2174989..2175234) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903177.1 CDS moaC NC_021151.1 2175227 2175712 R COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC complement(2175227..2175712) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903178.1 CDS STU288_10395 NC_021151.1 2175715 2176227 R COG0521 Molybdopterin biosynthesis enzymes; molybdopterin biosynthesis protein B complement(2175715..2176227) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903179.1 CDS moaA NC_021151.1 2176249 2177238 R COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A complement(2176249..2177238) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903180.1 CDS STU288_10405 NC_021151.1 2177635 2178543 D COG0391 Uncharacterized conserved protein; protein YbhK 2177635..2178543 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903181.1 CDS STU288_10410 NC_021151.1 2178635 2180932 R COG4886 Leucine-rich repeat (LRR) protein; E3 ubiquitin-protein ligase SlrP complement(2178635..2180932) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903182.1 CDS STU288_10415 NC_021151.1 2181422 2183443 R COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B complement(2181422..2183443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903183.1 CDS STU288_10420 NC_021151.1 2183855 2183965 D hypothetical protein 2183855..2183965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903184.1 CDS bioD NC_021151.1 2184093 2184779 R COG0132 Dethiobiotin synthetase; dithiobiotin synthetase complement(2184093..2184779) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903185.1 CDS STU288_10430 NC_021151.1 2184772 2185527 R COG0500 SAM-dependent methyltransferases; biotin biosynthesis protein BioC complement(2184772..2185527) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903186.1 CDS STU288_10435 NC_021151.1 2185511 2186668 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase complement(2185511..2186668) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903187.1 CDS STU288_10440 NC_021151.1 2186665 2187705 R COG0502 Biotin synthase and related enzymes; biotin synthase complement(2186665..2187705) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903188.1 CDS STU288_10445 NC_021151.1 2187792 2189081 D COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine--8-amino-7-oxononanoate transaminase 2187792..2189081 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903189.1 CDS STU288_10450 NC_021151.1 2189139 2189615 D COG1881 Phospholipid-binding protein; kinase inhibitor protein 2189139..2189615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903190.1 CDS STU288_10455 NC_021151.1 2189700 2191220 R COG2986 Histidine ammonia-lyase; histidine ammonia-lyase complement(2189700..2191220) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903193.1 CDS STU288_10470 NC_021151.1 2193103 2193828 R COG2188 Transcriptional regulators; histidine utilization repressor complement(2193103..2193828) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903194.1 CDS STU288_10475 NC_021151.1 2193873 2194814 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; formimidoylglutamase complement(2193873..2194814) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903195.1 CDS STU288_10480 NC_021151.1 2194811 2196034 R COG1228 Imidazolonepropionase and related amidohydrolases; imidazolonepropionase complement(2194811..2196034) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903196.1 CDS STU288_10485 NC_021151.1 2196272 2197555 D COG4677 Pectin methylesterase; acyl-CoA thioesterase 2196272..2197555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903197.1 CDS STU288_10490 NC_021151.1 2197699 2198694 R COG2706 3-carboxymuconate cyclase; 6-phosphogluconolactonase complement(2197699..2198694) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903198.1 CDS STU288_10495 NC_021151.1 2198858 2199676 D COG0561 Predicted hydrolases of the HAD superfamily; pyridoxal phosphate (PLP) phosphatase 2198858..2199676 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903199.1 CDS modC NC_021151.1 2199677 2200735 R COG4148 ABC-type molybdate transport system, ATPase component; molybdate transporter ATP-binding protein complement(2199677..2200735) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903200.1 CDS modB NC_021151.1 2200738 2201427 R COG4149 ABC-type molybdate transport system, permease component; molybdate ABC transporter permease protein complement(2200738..2201427) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903201.1 CDS modA NC_021151.1 2201427 2202200 R COG0725 ABC-type molybdate transport system, periplasmic component; molybdate transporter periplasmic protein complement(2201427..2202200) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903202.1 CDS STU288_10515 NC_021151.1 2202367 2202516 R hypothetical protein complement(2202367..2202516) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903203.1 CDS STU288_10520 NC_021151.1 2202645 2203433 D COG2005 N-terminal domain of molybdenum-binding protein; DNA-binding transcriptional regulator ModE 2202645..2203433 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903204.1 CDS STU288_10525 NC_021151.1 2203501 2204976 D COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; molybdenum transport ATP-binding protein ModF 2203501..2204976 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903205.1 CDS STU288_10530 NC_021151.1 2205147 2206055 D COG4714 Uncharacterized membrane-anchored protein conserved in bacteria; putative inner membrane protein 2205147..2206055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903206.1 CDS STU288_10535 NC_021151.1 2206278 2207294 D COG1087 UDP-glucose 4-epimerase; UDP-galactose-4-epimerase 2206278..2207294 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903207.1 CDS STU288_10540 NC_021151.1 2207305 2208351 D COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase 2207305..2208351 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903208.1 CDS STU288_10545 NC_021151.1 2208354 2209502 D COG0153 Galactokinase; galactokinase 2208354..2209502 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903209.1 CDS galM NC_021151.1 2209496 2210536 D COG2017 Galactose mutarotase and related enzymes; galactose-1-epimerase 2209496..2210536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903210.1 CDS gpmA NC_021151.1 2210760 2211512 D COG0588 Phosphoglycerate mutase 1; phosphoglyceromutase 2210760..2211512 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903211.1 CDS STU288_10560 NC_021151.1 2211603 2212379 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; ABC transporter ATP-binding protein complement(2211603..2212379) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903212.1 CDS STU288_10565 NC_021151.1 2212379 2213458 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; putative ABC transport protein complement(2212379..2213458) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903213.1 CDS STU288_10570 NC_021151.1 2213838 2214536 R COG1767 Triphosphoribosyl-dephospho-CoA synthetase; hypothetical protein complement(2213838..2214536) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903214.1 CDS STU288_10575 NC_021151.1 2214655 2215956 R COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase subunit beta complement(2214655..2215956) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903217.1 CDS STU288_10590 NC_021151.1 2217702 2217812 D hypothetical protein 2217702..2217812 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903218.1 CDS STU288_10595 NC_021151.1 2217759 2218004 R COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma complement(2217759..2218004) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903219.1 CDS STU288_10600 NC_021151.1 2218054 2219322 R COG0471 Di- and tricarboxylate transporters; anion transporter complement(2218054..2219322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903220.1 CDS STU288_10605 NC_021151.1 2219581 2220528 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2219581..2220528 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903221.1 CDS STU288_10610 NC_021151.1 2220529 2221419 R COG0583 Transcriptional regulator; putative HTH-type transcriptional regulator ywbI complement(2220529..2221419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903222.1 CDS STU288_10615 NC_021151.1 2221549 2222394 D COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase 2221549..2222394 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903223.1 CDS STU288_10620 NC_021151.1 2222409 2222954 D COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; hydro-lyase, tartrate/fumarate family, beta subunit 2222409..2222954 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903224.1 CDS STU288_10625 NC_021151.1 2223048 2224100 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2223048..2224100) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903225.1 CDS STU288_10630 NC_021151.1 2224420 2224806 D hypothetical protein 2224420..2224806 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903226.1 CDS STU288_10635 NC_021151.1 2224917 2225855 D COG1230 Co/Zn/Cd efflux system component; zinc transporter ZitB 2224917..2225855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903227.1 CDS STU288_10640 NC_021151.1 2225852 2226571 R COG3201 Nicotinamide mononucleotide transporter; nicotinamide riboside transporter PnuC complement(2225852..2226571) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903228.1 CDS STU288_10645 NC_021151.1 2226596 2227639 R COG0379 Quinolinate synthase; quinolinate synthetase complement(2226596..2227639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903229.1 CDS STU288_10650 NC_021151.1 2229104 2229892 R COG1729 Uncharacterized protein conserved in bacteria; tol-pal system protein YbgF complement(2229104..2229892) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903230.1 CDS STU288_10655 NC_021151.1 2229902 2230426 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated outer membrane lipoprotein complement(2229902..2230426) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903231.1 CDS tolB NC_021151.1 2230461 2231753 R COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB complement(2230461..2231753) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903232.1 CDS tolA NC_021151.1 2231877 2233100 R COG3064 Membrane protein involved in colicin uptake; cell envelope integrity inner membrane protein TolA complement(2231877..2233100) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903233.1 CDS STU288_10670 NC_021151.1 2233165 2233593 R COG0848 Biopolymer transport protein; colicin uptake protein TolR complement(2233165..2233593) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903234.1 CDS STU288_10675 NC_021151.1 2233597 2234289 R COG0811 Biopolymer transport proteins; colicin uptake protein TolQ complement(2233597..2234289) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903235.1 CDS STU288_10680 NC_021151.1 2234286 2234690 R COG0824 Predicted thioesterase; acyl-CoA thioesterase YbgC complement(2234286..2234690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903236.1 CDS STU288_10685 NC_021151.1 2234919 2235200 R COG3790 Predicted membrane protein; hypothetical protein complement(2234919..2235200) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903237.1 CDS STU288_10690 NC_021151.1 2235197 2235337 R hypothetical protein complement(2235197..2235337) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903238.1 CDS STU288_10695 NC_021151.1 2235337 2235450 R COG4890 Predicted outer membrane lipoprotein; hypothetical protein complement(2235337..2235450) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903239.1 CDS STU288_10700 NC_021151.1 2235465 2236604 R COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit 2 complement(2235465..2236604) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903240.1 CDS STU288_10705 NC_021151.1 2236620 2238188 R COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d terminal oxidase subunit 1 complement(2236620..2238188) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903241.1 CDS STU288_10710 NC_021151.1 2238315 2238395 D hypothetical protein 2238315..2238395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903242.1 CDS STU288_10715 NC_021151.1 2239771 2240640 R COG0074 Succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha complement(2239771..2240640) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903243.1 CDS sucC NC_021151.1 2240640 2241806 R COG0045 Succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta complement(2240640..2241806) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903244.1 CDS STU288_10725 NC_021151.1 2241948 2243156 R COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide succinyltransferase complement(2241948..2243156) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903245.1 CDS sucA NC_021151.1 2243171 2245972 R COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; 2-oxoglutarate dehydrogenase E1 component complement(2243171..2245972) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903246.1 CDS sdhB NC_021151.1 2246496 2247212 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; succinate dehydrogenase iron-sulfur subunit complement(2246496..2247212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903247.1 CDS sdhA NC_021151.1 2247229 2248995 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit complement(2247229..2248995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903248.1 CDS sdhD NC_021151.1 2248995 2249342 R COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase cytochrome b556 small membrane subunit complement(2248995..2249342) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903249.1 CDS sdhC NC_021151.1 2249336 2249725 R COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit complement(2249336..2249725) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903250.1 CDS gltA NC_021151.1 2250480 2251763 D COG0372 Citrate synthase; type II citrate synthase 2250480..2251763 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903251.1 CDS STU288_10760 NC_021151.1 2251900 2252946 D COG3180 Putative ammonia monooxygenase; aidB regulatorAbrB 2251900..2252946 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903252.1 CDS STU288_10765 NC_021151.1 2253001 2253792 R COG0266 Formamidopyrimidine-DNA glycosylase; endonuclease VIII complement(2253001..2253792) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903253.1 CDS STU288_10770 NC_021151.1 2254046 2255995 R COG5610 Predicted hydrolase (HAD superfamily); Haloacid dehalogenase-like hydrolase complement(2254046..2255995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903254.1 CDS STU288_10775 NC_021151.1 2255999 2256832 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyltransferase complement(2255999..2256832) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903255.1 CDS STU288_10780 NC_021151.1 2257025 2258803 R COG1216 Predicted glycosyltransferases; glycosyltransferase, cell wall biogenesis complement(2257025..2258803) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903256.1 CDS STU288_10785 NC_021151.1 2258897 2259607 R COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Spermidine/putrescine import ATP-binding protein potA complement(2258897..2259607) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903257.1 CDS STU288_10790 NC_021151.1 2259611 2260381 R COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen export system permease protein rfbA complement(2259611..2260381) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903258.1 CDS STU288_10795 NC_021151.1 2260510 2261643 R COG0438 Glycosyltransferase; Amylovoran biosynthesis glycosyltransferase amsK complement(2260510..2261643) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903259.1 CDS STU288_10800 NC_021151.1 2261656 2262549 R COG1216 Predicted glycosyltransferases; putative glycosyl transferase complement(2261656..2262549) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903260.1 CDS STU288_10805 NC_021151.1 2262549 2263700 R COG0562 UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(2262549..2263700) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903261.1 CDS STU288_10810 NC_021151.1 2263986 2264726 R transport protein complement(2263986..2264726) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903262.1 CDS STU288_10815 NC_021151.1 2264728 2264949 R hypothetical protein complement(2264728..2264949) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903263.1 CDS STU288_10820 NC_021151.1 2265523 2266089 R COG0582 Integrase; hypothetical protein complement(2265523..2266089) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903264.1 CDS STU288_10825 NC_021151.1 2266384 2266485 D hypothetical protein 2266384..2266485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903265.1 CDS STU288_10830 NC_021151.1 2266604 2267338 R COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; LamB/YcsF family protein complement(2266604..2267338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903266.1 CDS STU288_10835 NC_021151.1 2267328 2268260 R COG1984 Allophanate hydrolase subunit 2; hypothetical protein complement(2267328..2268260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903267.1 CDS STU288_10840 NC_021151.1 2268254 2268910 R COG2049 Allophanate hydrolase subunit 1; hypothetical protein complement(2268254..2268910) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903268.1 CDS STU288_10845 NC_021151.1 2268926 2269669 R COG0327 Uncharacterized conserved protein; metal-binding protein complement(2268926..2269669) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903269.1 CDS STU288_10850 NC_021151.1 2269998 2271479 D COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease D 2269998..2271479 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903270.1 CDS STU288_10855 NC_021151.1 2271518 2272939 R COG0415 Deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase complement(2271518..2272939) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903271.1 CDS STU288_10860 NC_021151.1 2273050 2273256 R hypothetical protein complement(2273050..2273256) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903272.1 CDS STU288_10865 NC_021151.1 2273593 2273682 D K+-transporting ATPase, F subunit 2273593..2273682 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903273.1 CDS STU288_10870 NC_021151.1 2273682 2275361 D COG2060 K+-transporting ATPase, A chain; potassium-transporting ATPase subunit A 2273682..2275361 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903274.1 CDS STU288_10875 NC_021151.1 2275382 2277430 D COG2216 High-affinity K+ transport system, ATPase chain B; potassium-transporting ATPase subunit B 2275382..2277430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903275.1 CDS STU288_10880 NC_021151.1 2277439 2278023 D COG2156 K+-transporting ATPase, c chain; potassium-transporting ATPase subunit C 2277439..2278023 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903276.1 CDS STU288_10885 NC_021151.1 2278020 2280704 D COG2205 Osmosensitive K+ channel histidine kinase; sensor protein KdpD 2278020..2280704 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903277.1 CDS STU288_10890 NC_021151.1 2280701 2281378 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator KdpE 2280701..2281378 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903278.1 CDS STU288_10895 NC_021151.1 2281629 2281742 R hypothetical protein complement(2281629..2281742) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903279.1 CDS STU288_10900 NC_021151.1 2282140 2284338 D COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 2282140..2284338 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903280.1 CDS potE NC_021151.1 2284335 2285654 D COG0531 Amino acid transporters; putrescine transporter 2284335..2285654 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903281.1 CDS STU288_10910 NC_021151.1 2285719 2286204 D COG3467 Predicted flavin-nucleotide-binding protein; putative cytoplasmic protein 2285719..2286204 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903282.1 CDS STU288_10915 NC_021151.1 2286319 2287959 R COG0033 Phosphoglucomutase; phosphoglucomutase complement(2286319..2287959) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903283.1 CDS STU288_10920 NC_021151.1 2287984 2288526 R COG3057 Negative regulator of replication initiationR; replication initiation regulator SeqA complement(2287984..2288526) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903284.1 CDS STU288_10925 NC_021151.1 2288711 2289481 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); acyl-CoA esterase 2288711..2289481 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903285.1 CDS STU288_10930 NC_021151.1 2289615 2289908 D LexA regulated protein 2289615..2289908 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903286.1 CDS STU288_10935 NC_021151.1 2290059 2290589 D COG0716 Flavodoxins; flavodoxin FldA 2290059..2290589 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903287.1 CDS fur NC_021151.1 2290871 2291323 D COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator 2290871..2291323 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903288.1 CDS STU288_10945 NC_021151.1 2291438 2292364 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2291438..2292364 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903289.1 CDS STU288_10950 NC_021151.1 2292462 2293865 D COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; tricarballylate dehydrogenase 2292462..2293865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903290.1 CDS STU288_10955 NC_021151.1 2293852 2294991 D COG0247 Fe-S oxidoreductase; tricarballylate utilization protein B 2293852..2294991 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903291.1 CDS STU288_10960 NC_021151.1 2295042 2296346 D COG0477 Permeases of the major facilitator superfamily; citrate-proton symporter 2295042..2296346 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903292.1 CDS STU288_10965 NC_021151.1 2296395 2296727 R lipoprotein complement(2296395..2296727) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903293.1 CDS chiP NC_021151.1 2296777 2298183 R chitoporin complement(2296777..2298183) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903294.1 CDS STU288_10975 NC_021151.1 2298629 2300296 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutaminyl-tRNA ligase complement(2298629..2300296) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903295.1 CDS STU288_10980 NC_021151.1 2300507 2302459 R COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system N-acetyl glucosamine specific transporter subunits IIABC complement(2300507..2302459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903296.1 CDS nagB NC_021151.1 2302786 2303586 D COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate deaminase 2302786..2303586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903297.1 CDS nagA NC_021151.1 2303646 2304800 D COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 2303646..2304800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903298.1 CDS STU288_10995 NC_021151.1 2304805 2306025 D COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional dual regulator NagC 2304805..2306025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903299.1 CDS STU288_11000 NC_021151.1 2306072 2306824 D COG0647 Predicted sugar phosphatases of the HAD superfamily; UMP phosphatase 2306072..2306824 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903300.1 CDS asnB NC_021151.1 2307114 2308778 D COG0367 Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase B 2307114..2308778 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903301.1 CDS STU288_11010 NC_021151.1 2309845 2310420 D hypothetical protein 2309845..2310420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903302.1 CDS ubiF NC_021151.1 2310487 2311662 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(2310487..2311662) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903303.1 CDS STU288_11020 NC_021151.1 2311806 2313230 D COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 2311806..2313230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903304.1 CDS STU288_11025 NC_021151.1 2313435 2314481 D COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH-like protein 2313435..2314481 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903305.1 CDS STU288_11030 NC_021151.1 2314478 2314951 D COG0319 Predicted metal-dependent hydrolase; metal-binding heat shock protein 2314478..2314951 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903306.1 CDS STU288_11035 NC_021151.1 2315109 2315987 D COG4535 Putative Mg2+ and Co2+ transporter CorC; magnesium/cobalt efflux protein CorC 2315109..2315987 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903307.1 CDS lnt NC_021151.1 2316007 2317545 D COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2316007..2317545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903308.1 CDS STU288_11045 NC_021151.1 2317900 2318808 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamate and aspartate transporter subunit 2317900..2318808 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903309.1 CDS STU288_11050 NC_021151.1 2318968 2319708 D COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease GltJ 2318968..2319708 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903310.1 CDS STU288_11055 NC_021151.1 2319708 2320382 D COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate transport system permease GltK 2319708..2320382 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903311.1 CDS STU288_11060 NC_021151.1 2320382 2321107 D COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate transport ATP-binding protein GltL 2320382..2321107 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903312.1 CDS rihA NC_021151.1 2321224 2322159 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 1 2321224..2322159 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903313.1 CDS STU288_11070 NC_021151.1 2322191 2323429 D hypothetical protein 2322191..2323429 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903314.1 CDS STU288_11075 NC_021151.1 2323505 2325184 D COG0443 Molecular chaperone; chaperone heat shock protein 2323505..2325184 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903315.1 CDS STU288_11080 NC_021151.1 2325206 2326678 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; putative molecular chaperone complement(2325206..2326678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903316.1 CDS STU288_11085 NC_021151.1 2326675 2327370 R hypothetical protein complement(2326675..2327370) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903317.1 CDS STU288_11090 NC_021151.1 2327382 2328815 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; hypothetical protein complement(2327382..2328815) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903318.1 CDS STU288_11095 NC_021151.1 2328812 2329519 R putative cytoplasmic protein complement(2328812..2329519) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903319.1 CDS STU288_11100 NC_021151.1 2329644 2330639 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 2329644..2330639 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903320.1 CDS STU288_11105 NC_021151.1 2330678 2331151 R COG0542 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein complement(2330678..2331151) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903321.1 CDS STU288_11110 NC_021151.1 2331244 2333172 R COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; sigma-54 dependent transcriptional regulator complement(2331244..2333172) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903322.1 CDS STU288_11115 NC_021151.1 2333240 2334193 R 2-keto-3-deoxygluconate permease complement(2333240..2334193) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903323.1 CDS STU288_11120 NC_021151.1 2334243 2335415 R COG2721 Altronate dehydratase; UxaA family hydrolase complement(2334243..2335415) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903324.1 CDS STU288_11125 NC_021151.1 2335432 2335722 R COG2721 Altronate dehydratase; putative hydrolase complement(2335432..2335722) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903325.1 CDS leuS NC_021151.1 2336010 2338592 D COG0495 Leucyl-tRNA synthetase; leucyl-tRNA ligase 2336010..2338592 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903326.1 CDS STU288_11135 NC_021151.1 2338607 2339197 D COG2980 Rare lipoprotein B; LPS-assembly lipoprotein RlpB 2338607..2339197 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903327.1 CDS holA NC_021151.1 2339197 2340228 D COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2339197..2340228 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903328.1 CDS nadD NC_021151.1 2340230 2340871 D COG1057 Nicotinic acid mononucleotide adenylyltransferase; nicotinic acid mononucleotide adenylyltransferase 2340230..2340871 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903329.1 CDS STU288_11150 NC_021151.1 2340846 2341940 R COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; threonine-phosphate decarboxylase complement(2340846..2341940) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903330.1 CDS STU288_11155 NC_021151.1 2342037 2342645 D COG0406 Fructose-2,6-bisphosphatase; alpha-ribazole phosphatase 2342037..2342645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903331.1 CDS STU288_11160 NC_021151.1 2342645 2342785 D hypothetical protein 2342645..2342785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903332.1 CDS STU288_11165 NC_021151.1 2342974 2343291 D COG0799 Uncharacterized homolog of plant Iojap protein; ribosome-associated protein 2342974..2343291 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903333.1 CDS STU288_11170 NC_021151.1 2343295 2343762 D COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase 2343295..2343762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903334.1 CDS STU288_11175 NC_021151.1 2343793 2345694 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 2343793..2345694 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903335.1 CDS STU288_11180 NC_021151.1 2345697 2346809 D COG0772 Bacterial cell division membrane protein; cell wall shape-determining protein 2345697..2346809 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903336.1 CDS STU288_11185 NC_021151.1 2346820 2347965 D COG0797 Lipoproteins; rare lipoprotein A 2346820..2347965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903337.1 CDS STU288_11190 NC_021151.1 2348105 2349316 D COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction A 2348105..2349316 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903338.1 CDS STU288_11195 NC_021151.1 2349425 2349688 D COG2921 Uncharacterized conserved protein; hypothetical protein 2349425..2349688 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903339.1 CDS STU288_11200 NC_021151.1 2349788 2350429 D COG0321 Lipoate-protein ligase B; lipoate-protein ligase B 2349788..2350429 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903340.1 CDS STU288_11205 NC_021151.1 2350731 2351684 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 2350731..2351684 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903341.1 CDS STU288_11210 NC_021151.1 2351890 2352855 D COG0320 Lipoate synthase; lipoyl synthase 2351890..2352855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903342.1 CDS tatE NC_021151.1 2352941 2353144 R COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein E complement(2352941..2353144) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903343.1 CDS STU288_11220 NC_021151.1 2353273 2354061 R COG0388 Predicted amidohydrolase; hydrolase complement(2353273..2354061) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903344.1 CDS STU288_11225 NC_021151.1 2354152 2354535 D COG0239 Integral membrane protein possibly involved in chromosome condensation; chromosome condensation membrane protein 2354152..2354535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903345.1 CDS cspE NC_021151.1 2354593 2354802 R COG1278 Cold shock proteins; cold shock protein CspE complement(2354593..2354802) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903346.1 CDS pagP NC_021151.1 2354990 2355550 R phospholipid:lipid A palmitoyltransferase complement(2354990..2355550) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903347.1 CDS dcuC NC_021151.1 2355941 2357326 D COG3069 C4-dicarboxylate transporter; C4-dicarboxylate transporter DcuC 2355941..2357326 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903348.1 CDS dpiA NC_021151.1 2357380 2358060 R COG4565 Response regulator of citrate/malate metabolism; two-component response regulator DpiA complement(2357380..2358060) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903349.1 CDS dpiB NC_021151.1 2358029 2359690 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor histidine kinase DpiB complement(2358029..2359690) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903350.1 CDS STU288_11255 NC_021151.1 2360075 2361151 D COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 2360075..2361151 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903351.1 CDS STU288_11260 NC_021151.1 2361148 2361444 D COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma 2361148..2361444 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903352.1 CDS STU288_11265 NC_021151.1 2361441 2362349 D COG2301 Citrate lyase beta subunit; citrate lyase subunit beta 2361441..2362349 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903353.1 CDS STU288_11270 NC_021151.1 2362359 2363888 D COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 2362359..2363888 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903354.1 CDS citX NC_021151.1 2363892 2364443 D COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 2363892..2364443 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903355.1 CDS citG NC_021151.1 2364415 2365311 D COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase 2364415..2365311 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903356.1 CDS STU288_11285 NC_021151.1 2365349 2366812 D COG0471 Di- and tricarboxylate transporters; citrate:succinate antiporter 2365349..2366812 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903357.1 CDS STU288_11290 NC_021151.1 2366922 2367728 D COG3719 Ribonuclease I; ribonuclease I 2366922..2367728 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903358.1 CDS STU288_11295 NC_021151.1 2367963 2368373 D COG0782 Transcription elongation factor; nucleoside diphosphate kinase regulator 2367963..2368373 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903359.1 CDS STU288_11300 NC_021151.1 2368456 2369694 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc-dependent alcohol dehydrogenase complement(2368456..2369694) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903360.1 CDS STU288_11305 NC_021151.1 2369917 2370345 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspG 2369917..2370345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903361.1 CDS STU288_11310 NC_021151.1 2370413 2371180 R COG3302 DMSO reductase anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit complement(2370413..2371180) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903362.1 CDS STU288_11315 NC_021151.1 2371180 2371737 R COG0437 Fe-S-cluster-containing hydrogenase components 1; molybdopterin-containing oxidoreductase iron-sulfur subunit complement(2371180..2371737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903363.1 CDS STU288_11320 NC_021151.1 2371734 2374013 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative oxidoreductase protein complement(2371734..2374013) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903364.1 CDS STU288_11325 NC_021151.1 2374006 2374566 R COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein complement(2374006..2374566) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903365.1 CDS STU288_11330 NC_021151.1 2374898 2376463 R COG3634 Alkyl hydroperoxide reductase, large subunit; alkyl hydroperoxide reductase subunit F complement(2374898..2376463) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903366.1 CDS STU288_11335 NC_021151.1 2376705 2377268 R COG0450 Peroxiredoxin; alkyl hydroperoxide reductase subunit C complement(2376705..2377268) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903367.1 CDS dsbG NC_021151.1 2377709 2378455 D COG1651 Protein-disulfide isomerase; disulfide isomerase/thiol-disulfide oxidase 2377709..2378455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903368.1 CDS STU288_11345 NC_021151.1 2378772 2379674 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2378772..2379674 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903369.1 CDS STU288_11350 NC_021151.1 2379840 2381075 D COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 2379840..2381075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903370.1 CDS STU288_11355 NC_021151.1 2381036 2381665 D COG1475 Predicted transcriptional regulators; hypothetical protein 2381036..2381665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903371.1 CDS STU288_11360 NC_021151.1 2381666 2382826 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; methionine aminotransferase complement(2381666..2382826) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903372.1 CDS STU288_11365 NC_021151.1 2382953 2384041 D COG0371 Glycerol dehydrogenase and related enzymes; oxidoreductase 2382953..2384041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903373.1 CDS STU288_11370 NC_021151.1 2384077 2384274 R COG2879 Uncharacterized small protein; hypothetical protein complement(2384077..2384274) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903374.1 CDS STU288_11375 NC_021151.1 2384338 2386443 R COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein A complement(2384338..2386443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903375.1 CDS STU288_11380 NC_021151.1 2386625 2387038 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase complement(2386625..2387038) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903376.1 CDS STU288_11385 NC_021151.1 2387041 2387796 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxybenzoate-2,3-dehydrogenase complement(2387041..2387796) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903377.1 CDS STU288_11390 NC_021151.1 2387796 2388653 R COG1535 Isochorismate hydrolase; isochorismatase complement(2387796..2388653) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903378.1 CDS entE NC_021151.1 2388667 2390277 R COG1021 Peptide arylation enzymes; enterobactin synthase subunit E complement(2388667..2390277) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903379.1 CDS STU288_11400 NC_021151.1 2390287 2391462 R COG1169 Isochorismate synthase; isochorismate synthase EntC complement(2390287..2391462) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903380.1 CDS STU288_11405 NC_021151.1 2391771 2392727 D COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component; iron-enterobactin transporter periplasmic binding protein 2391771..2392727 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903381.1 CDS STU288_11410 NC_021151.1 2392790 2394034 R COG0477 Permeases of the major facilitator superfamily; enterobactin exporter EntS complement(2392790..2394034) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903382.1 CDS STU288_11415 NC_021151.1 2394145 2395152 D COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-enterobactin transporter membrane protein 2394145..2395152 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903383.1 CDS STU288_11420 NC_021151.1 2395149 2396141 D COG4779 ABC-type enterobactin transport system, permease component; iron-enterobactin transporter permease 2395149..2396141 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903384.1 CDS STU288_11425 NC_021151.1 2396138 2396932 D COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-enterobactin transporter ATP-binding protein 2396138..2396932 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903385.1 CDS STU288_11430 NC_021151.1 2396985 2398121 R COG3765 Chain length determinant protein; LPS O-antigen length regulator complement(2396985..2398121) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903386.1 CDS entF NC_021151.1 2398371 2402255 R COG1020 Non-ribosomal peptide synthetase modules and related proteins; enterobactin synthase subunit F complement(2398371..2402255) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903387.1 CDS STU288_11440 NC_021151.1 2402252 2402470 R COG3251 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2402252..2402470) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903388.1 CDS STU288_11445 NC_021151.1 2402501 2403715 R COG2382 Enterochelin esterase and related enzymes; enterobactin/ferric enterobactin esterase complement(2402501..2403715) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903389.1 CDS STU288_11450 NC_021151.1 2403904 2406159 D COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA 2403904..2406159 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903390.1 CDS STU288_11455 NC_021151.1 2406205 2406909 D COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 2406205..2406909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903391.1 CDS STU288_11460 NC_021151.1 2406921 2408039 D COG2170 Uncharacterized conserved protein; gamma-glutamyl:cysteine ligase 2406921..2408039 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903392.1 CDS STU288_11465 NC_021151.1 2408106 2408354 D hypothetical protein 2408106..2408354 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903393.1 CDS STU288_11470 NC_021151.1 2408360 2408701 R COG2207 AraC-type DNA-binding domain-containing proteins; transposon Tn10 TetD protein complement(2408360..2408701) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903394.1 CDS STU288_11475 NC_021151.1 2408990 2409571 D COG1309 Transcriptional regulator; HTH-type transcriptional repressor Bm3R1 2408990..2409571 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903395.1 CDS STU288_11480 NC_021151.1 2409571 2409939 D COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 2409571..2409939 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903396.1 CDS STU288_11485 NC_021151.1 2410036 2410689 D COG0778 Nitroreductase; dihydropteridine reductase 2410036..2410689 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903397.1 CDS STU288_11490 NC_021151.1 2410889 2411338 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS system, mannose-specific II component 2410889..2411338 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903398.1 CDS STU288_11495 NC_021151.1 2411316 2411786 D COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, IIB component 2411316..2411786 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903399.1 CDS STU288_11500 NC_021151.1 2411801 2412544 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; sorbose-specific PTS system IIC protein 2411801..2412544 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903400.1 CDS STU288_11505 NC_021151.1 2412547 2413401 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 2412547..2413401 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903401.1 CDS STU288_11510 NC_021151.1 2413416 2414477 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 2413416..2414477 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903402.1 CDS STU288_11515 NC_021151.1 2414544 2415530 D COG2222 Predicted phosphosugar isomerases; phospohtase isomerase-like protein 2414544..2415530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903403.1 CDS STU288_11520 NC_021151.1 2415658 2418387 R COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; NtrC Transcriptional regulator, ATPase domain protein complement(2415658..2418387) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903404.1 CDS STU288_11525 NC_021151.1 2418554 2420524 R COG3240 Phospholipase/lecithinase/hemolysin; outer membrane esterase complement(2418554..2420524) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903405.1 CDS STU288_11530 NC_021151.1 2420835 2422082 D COG0668 Small-conductance mechanosensitive channel; hypothetical protein 2420835..2422082 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903406.1 CDS STU288_11535 NC_021151.1 2422124 2423518 R COG1113 Gamma-aminobutyrate permease and related permeases; phenylalanine transporter complement(2422124..2423518) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903407.1 CDS STU288_11540 NC_021151.1 2423844 2425019 D COG1076 DnaJ-domain-containing proteins 1; DNA repair ATPase 2423844..2425019 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903408.1 CDS STU288_11545 NC_021151.1 2425098 2425658 R COG3059 Predicted membrane protein; hypothetical protein complement(2425098..2425658) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903409.1 CDS STU288_11550 NC_021151.1 2425671 2425907 R hypothetical protein complement(2425671..2425907) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903410.1 CDS STU288_11555 NC_021151.1 2426064 2427389 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulfide oxidoreductase complement(2426064..2427389) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903411.1 CDS STU288_11560 NC_021151.1 2427605 2428459 D COG2207 AraC-type DNA-binding domain-containing proteins; Transcriptional regulator (AraC/XylS family) protein 2427605..2428459 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903412.1 CDS STU288_11565 NC_021151.1 2428510 2428674 R COG3696 Putative silver efflux pump; cation efflux system protein CusA complement(2428510..2428674) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903413.1 CDS STU288_11570 NC_021151.1 2428798 2429127 D COG0642 Signal transduction histidine kinase; Osmosensitive K+ channel histidine kinase KdpD 2428798..2429127 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903414.1 CDS STU288_11575 NC_021151.1 2429366 2429497 D copE1 2429366..2429497 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903415.1 CDS STU288_11580 NC_021151.1 2429995 2430357 D COG2246 Predicted membrane protein; Bactoprenol-linked glucose translocase 2429995..2430357 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903416.1 CDS STU288_11585 NC_021151.1 2430354 2431280 D COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase 2430354..2431280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903417.1 CDS STU288_11590 NC_021151.1 2431273 2432913 D putative inner membrane protein 2431273..2432913 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903418.1 CDS STU288_11595 NC_021151.1 2432970 2433128 R hypothetical protein complement(2432970..2433128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903419.1 CDS STU288_11600 NC_021151.1 2433300 2433518 D COG2963 Transposase and inactivated derivatives; transposase 2433300..2433518 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903420.1 CDS STU288_11605 NC_021151.1 2433855 2434124 D integrase 2433855..2434124 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903421.1 CDS STU288_11610 NC_021151.1 2434415 2435011 D fimbriae regulatory protein FimW 2434415..2435011 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903422.1 CDS STU288_11615 NC_021151.1 2435173 2435484 D COG2200 FOG: EAL domain; Putative diguanylate cyclase/phosphodiesterase domain 0 2435173..2435484 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903423.1 CDS STU288_11620 NC_021151.1 2435503 2436225 D COG1270 Cobalamin biosynthesis protein CobD/CbiB; fimbriae Y protein 2435503..2436225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903424.1 CDS STU288_11625 NC_021151.1 2436829 2437461 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator FimZ 2436829..2437461 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903425.1 CDS STU288_11630 NC_021151.1 2437507 2438025 R COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein SfmF complement(2437507..2438025) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903426.1 CDS fimH NC_021151.1 2438035 2439042 R fimbrial-like adhesin complement(2438035..2439042) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903427.1 CDS STU288_11640 NC_021151.1 2439057 2441669 R COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD complement(2439057..2441669) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903428.1 CDS STU288_11645 NC_021151.1 2441700 2442392 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein FimC complement(2441700..2442392) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903429.1 CDS STU288_11650 NC_021151.1 2442436 2442969 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein FimI complement(2442436..2442969) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903430.1 CDS STU288_11655 NC_021151.1 2443045 2443602 R COG3539 P pilus assembly protein, pilin FimA; type-1 fimbrial protein subunit A complement(2443045..2443602) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903431.1 CDS STU288_11660 NC_021151.1 2444149 2445015 D COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2444149..2445015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903432.1 CDS STU288_11665 NC_021151.1 2445017 2445229 D COG2501 Uncharacterized conserved protein; ribosome-associated protein 2445017..2445229 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903433.1 CDS STU288_11670 NC_021151.1 2445357 2445902 D COG1988 Predicted membrane-bound metal-dependent hydrolases; membrane-bound metal-dependent hydrolase 2445357..2445902 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903434.1 CDS STU288_11675 NC_021151.1 2445895 2446332 D hypothetical protein 2445895..2446332 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903435.1 CDS STU288_11680 NC_021151.1 2446329 2447153 D COG4727 Uncharacterized protein conserved in bacteria; exported outer membrane protein 2446329..2447153 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903436.1 CDS cysS NC_021151.1 2447197 2448582 R COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA ligase complement(2447197..2448582) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903437.1 CDS STU288_11690 NC_021151.1 2448755 2449249 D COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B (rotamase B) 2448755..2449249 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903438.1 CDS STU288_11695 NC_021151.1 2449252 2449974 D COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase 2449252..2449974 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903439.1 CDS purE NC_021151.1 2450092 2450601 D COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; N5-carboxyaminoimidazole ribonucleotide mutase 2450092..2450601 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903440.1 CDS STU288_11705 NC_021151.1 2450598 2451665 D COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); phosphoribosylaminoimidazole carboxylase ATPase subunit 2450598..2451665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903441.1 CDS STU288_11710 NC_021151.1 2451706 2452599 R COG0549 Carbamate kinase; carbamate kinase complement(2451706..2452599) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903442.1 CDS STU288_11715 NC_021151.1 2452603 2453412 R hypothetical protein complement(2452603..2453412) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903443.1 CDS STU288_11720 NC_021151.1 2453424 2454683 R hypothetical protein complement(2453424..2454683) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903444.1 CDS STU288_11725 NC_021151.1 2454693 2456357 R COG0074 Succinyl-CoA synthetase, alpha subunit; membrane protein FdrA complement(2454693..2456357) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903445.1 CDS STU288_11730 NC_021151.1 2456688 2457737 D COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase 2456688..2457737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903446.1 CDS STU288_11735 NC_021151.1 2457759 2458994 D COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; allantoate amidohydrolase 2457759..2458994 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903447.1 CDS STU288_11740 NC_021151.1 2459005 2459790 D COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; hypothetical protein 2459005..2459790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903448.1 CDS STU288_11745 NC_021151.1 2459870 2461018 R COG1929 Glycerate kinase; glycerate kinase II complement(2459870..2461018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903449.1 CDS STU288_11750 NC_021151.1 2461041 2462339 R COG2233 Xanthine/uracil permeases; uracil/xanthine transporter complement(2461041..2462339) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903450.1 CDS STU288_11755 NC_021151.1 2462398 2463759 R COG0044 Dihydroorotase and related cyclic amidohydrolases; allantoinase complement(2462398..2463759) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903451.1 CDS STU288_11760 NC_021151.1 2463838 2465292 R COG1953 Cytosine/uracil/thiamine/allantoin permeases; allantoin permease complement(2463838..2465292) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903452.1 CDS STU288_11765 NC_021151.1 2465388 2466635 R COG0477 Permeases of the major facilitator superfamily; putative permease complement(2465388..2466635) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903453.1 CDS STU288_11770 NC_021151.1 2466701 2467579 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase complement(2466701..2467579) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903454.1 CDS STU288_11775 NC_021151.1 2467680 2468456 R COG3622 Hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(2467680..2468456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903455.1 CDS STU288_11780 NC_021151.1 2468469 2470250 R COG3960 Glyoxylate carboligase; glyoxylate carboligase complement(2468469..2470250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903456.1 CDS STU288_11785 NC_021151.1 2470335 2471153 R COG1414 Transcriptional regulator; DNA-binding transcriptional repressor AllR complement(2470335..2471153) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903457.1 CDS STU288_11790 NC_021151.1 2471232 2471714 R COG3194 Ureidoglycolate hydrolase; ureidoglycolate hydrolase complement(2471232..2471714) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903458.1 CDS STU288_11795 NC_021151.1 2471941 2472867 D COG0583 Transcriptional regulator; DNA-binding transcriptional activator AllS 2471941..2472867 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903459.1 CDS STU288_11800 NC_021151.1 2472937 2474031 D COG2603 Predicted ATPase; tRNA 2-selenouridine synthase 2472937..2474031 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903460.1 CDS STU288_11805 NC_021151.1 2474070 2474729 R COG2011 ABC-type metal ion transport system, permease component; putative D-methionine transport system permease protein metI complement(2474070..2474729) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903461.1 CDS STU288_11810 NC_021151.1 2474722 2475738 R COG1135 ABC-type metal ion transport system, ATPase component; ABC transporter ATP-binding protein complement(2474722..2475738) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903462.1 CDS STU288_11815 NC_021151.1 2475775 2476605 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; lipoprotein complement(2475775..2476605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903463.1 CDS STU288_11820 NC_021151.1 2476862 2477995 R COG3203 Outer membrane protein (porin); Outer membrane pore protein E Flags: Precursor complement(2476862..2477995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903464.1 CDS STU288_11825 NC_021151.1 2478080 2478184 R hypothetical protein complement(2478080..2478184) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903465.1 CDS STU288_11830 NC_021151.1 2478181 2480595 R COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; hypothetical protein complement(2478181..2480595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903466.1 CDS STU288_11835 NC_021151.1 2480592 2481278 R COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; ABC transporter ATP-binding protein YbbA complement(2480592..2481278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903467.1 CDS STU288_11840 NC_021151.1 2481249 2481863 D COG2755 Lysophospholipase L1 and related esterases; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 2481249..2481863 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903468.1 CDS STU288_11845 NC_021151.1 2482018 2482788 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 2482018..2482788 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903469.1 CDS STU288_11850 NC_021151.1 2482848 2483702 D COG3118 Thioredoxin domain-containing protein; thioredoxin domain-containing protein 2482848..2483702 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903470.1 CDS STU288_11855 NC_021151.1 2483788 2484567 R COG0390 ABC-type uncharacterized transport system, permease component; metal resistance protein complement(2483788..2484567) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903471.1 CDS STU288_11860 NC_021151.1 2484554 2485231 R COG4619 ABC-type uncharacterized transport system, ATPase component; ABC transporter ATP-binding protein YbbL complement(2484554..2485231) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903472.1 CDS STU288_11865 NC_021151.1 2485378 2486295 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 2485378..2486295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903473.1 CDS STU288_11870 NC_021151.1 2486292 2486744 D COG1585 Membrane protein implicated in regulation of membrane protease activity; nodulation efficiency family protein 2486292..2486744 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903474.1 CDS STU288_11875 NC_021151.1 2486745 2487161 R COG0789 Predicted transcriptional regulators; DNA-binding transcriptional regulator CueR complement(2486745..2487161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903475.1 CDS copA NC_021151.1 2487271 2489772 D COG2217 Cation transport ATPase; copper exporting ATPase 2487271..2489772 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903476.1 CDS STU288_11885 NC_021151.1 2489926 2490753 D COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein 2489926..2490753 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903477.1 CDS STU288_11890 NC_021151.1 2490839 2491633 D COG3735 Uncharacterized protein conserved in bacteria; hypothetical protein 2490839..2491633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903478.1 CDS STU288_11895 NC_021151.1 2491835 2492314 D COG2606 Uncharacterized conserved protein; hypothetical protein 2491835..2492314 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903479.1 CDS ushA NC_021151.1 2492431 2494083 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor complement(2492431..2494083) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903480.1 CDS STU288_11905 NC_021151.1 2494256 2495476 D COG0477 Permeases of the major facilitator superfamily; fosmidomycin resistance protein 2494256..2495476 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903481.1 CDS STU288_11910 NC_021151.1 2495488 2495613 R hypothetical protein complement(2495488..2495613) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903482.1 CDS STU288_11915 NC_021151.1 2495691 2497367 D COG4651 Kef-type K+ transport system, predicted NAD-binding component; cation:proton antiport protein 2495691..2497367 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903483.1 CDS STU288_11920 NC_021151.1 2497416 2498720 R COG0524 Sugar kinases, ribokinase family; inosine/guanosine kinase complement(2497416..2498720) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903484.1 CDS STU288_11925 NC_021151.1 2498873 2499844 D COG0657 Esterase/lipase; acetyl esterase 2498873..2499844 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903485.1 CDS hemH NC_021151.1 2499841 2500803 R COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase complement(2499841..2500803) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903486.1 CDS adk NC_021151.1 2501032 2501676 R COG0563 Adenylate kinase and related kinases; adenylate kinase complement(2501032..2501676) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903487.1 CDS STU288_11940 NC_021151.1 2501593 2501814 D hypothetical protein 2501593..2501814 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903488.1 CDS STU288_11945 NC_021151.1 2501917 2503791 R COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 complement(2501917..2503791) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903489.1 CDS recR NC_021151.1 2503902 2504507 R COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR complement(2503902..2504507) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903490.1 CDS STU288_11955 NC_021151.1 2504507 2504836 R COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2504507..2504836) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903491.1 CDS STU288_11960 NC_021151.1 2504882 2506810 R COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau complement(2504882..2506810) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903492.1 CDS STU288_11965 NC_021151.1 2506924 2507475 R COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase complement(2506924..2507475) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903493.1 CDS STU288_11970 NC_021151.1 2507628 2508005 R COG2832 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2507628..2508005) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903494.1 CDS STU288_11975 NC_021151.1 2508074 2508601 D COG3923 Primosomal replication protein N''; primosomal replication protein N'' 2508074..2508601 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903495.1 CDS STU288_11980 NC_021151.1 2508615 2508782 D hypothetical protein 2508615..2508782 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903496.1 CDS STU288_11985 NC_021151.1 2508852 2509787 D COG5464 Uncharacterized conserved protein; hypothetical protein 2508852..2509787 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903497.1 CDS STU288_11990 NC_021151.1 2509829 2513191 R COG3264 Small-conductance mechanosensitive channel; hypothetical protein complement(2509829..2513191) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903498.1 CDS STU288_11995 NC_021151.1 2513310 2513963 R COG1309 Transcriptional regulator; DNA-binding transcriptional repressor AcrR complement(2513310..2513963) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903499.1 CDS STU288_12000 NC_021151.1 2514105 2515298 D COG0845 Membrane-fusion protein; multidrug efflux system transporter AcrA 2514105..2515298 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903500.1 CDS STU288_12005 NC_021151.1 2515321 2518470 D COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrB 2515321..2518470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903501.1 CDS STU288_12010 NC_021151.1 2518966 2519340 D Hha toxicity attenuator 2518966..2519340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903502.1 CDS STU288_12015 NC_021151.1 2519368 2519586 D modulator of gene expression, with H-NS 2519368..2519586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903503.1 CDS STU288_12020 NC_021151.1 2519765 2520316 D COG0110 Acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase 2519765..2520316 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903504.1 CDS STU288_12025 NC_021151.1 2520433 2520903 D hypothetical protein 2520433..2520903 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903505.1 CDS rpmJ NC_021151.1 2520959 2521099 R COG0257 Ribosomal protein L36; 50S ribosomal protein L36 complement(2520959..2521099) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903506.1 CDS rpmE2 NC_021151.1 2521105 2521365 R COG0254 Ribosomal protein L31; 50S ribosomal protein L31 type B complement(2521105..2521365) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903507.1 CDS STU288_12040 NC_021151.1 2521590 2523140 D COG4943 Predicted signal transduction protein containing sensor and EAL domains; EAL signaling domain protein 2521590..2523140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903508.1 CDS STU288_12045 NC_021151.1 2523371 2523760 D COG3695 Predicted methylated DNA-protein cysteine methyltransferase; methylated-DNA methyltransferase 2523371..2523760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903509.1 CDS STU288_12050 NC_021151.1 2523793 2524362 R COG3126 Uncharacterized protein conserved in bacteria; lipoprotein complement(2523793..2524362) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903510.1 CDS STU288_12055 NC_021151.1 2524577 2525437 D COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase II 2524577..2525437 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903511.1 CDS STU288_12060 NC_021151.1 2525537 2526823 R COG0004 Ammonia permease; ammonium transporter complement(2525537..2526823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903512.1 CDS STU288_12065 NC_021151.1 2526855 2527193 R COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 2 complement(2526855..2527193) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903513.1 CDS STU288_12070 NC_021151.1 2527406 2529187 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein complement(2527406..2529187) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903514.1 CDS STU288_12075 NC_021151.1 2529180 2530952 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein complement(2529180..2530952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903515.1 CDS STU288_12090 NC_021151.1 2531565 2532617 D COG0031 Cysteine synthase; pyridoxal-5'-phosphate-dependent enzyme beta subunit 2531565..2532617 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903516.1 CDS STU288_12095 NC_021151.1 2532667 2533485 R COG0561 Predicted hydrolases of the HAD superfamily; thiamin pyrimidine pyrophosphate hydrolase complement(2532667..2533485) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903517.1 CDS STU288_12100 NC_021151.1 2533586 2535286 D COG4533 ABC-type uncharacterized transport system, periplasmic component; Oligopeptide ABC oligopeptide-binding OppA 2533586..2535286 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903518.1 CDS STU288_12105 NC_021151.1 2535351 2536046 D COG0603 Predicted PP-loop superfamily ATPase; queuosine biosynthesis protein QueC 2535351..2536046 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903519.1 CDS STU288_12110 NC_021151.1 2536152 2536550 R COG0824 Predicted thioesterase; thioesterase superfamily protein complement(2536152..2536550) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903520.1 CDS STU288_12115 NC_021151.1 2536654 2537028 R COG1555 DNA uptake protein and related DNA-binding proteins; competence protein ComEA complement(2536654..2537028) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903521.1 CDS STU288_12120 NC_021151.1 2537178 2539049 R COG0760 Parvulin-like peptidyl-prolyl isomerase; periplasmic folding chaperone complement(2537178..2539049) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903522.1 CDS STU288_12125 NC_021151.1 2539340 2539612 R COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit beta complement(2539340..2539612) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903523.1 CDS STU288_12130 NC_021151.1 2539821 2542175 R COG0466 ATP-dependent Lon protease, bacterial type; DNA-binding ATP-dependent protease La complement(2539821..2542175) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903524.1 CDS clpX NC_021151.1 2542361 2543632 R COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX complement(2542361..2543632) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903525.1 CDS STU288_12140 NC_021151.1 2543884 2544507 R COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit complement(2543884..2544507) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903526.1 CDS tig NC_021151.1 2544754 2546052 R COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor complement(2544754..2546052) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903527.1 CDS STU288_12150 NC_021151.1 2546399 2546716 R COG0271 Stress-induced morphogen (activity unknown); transcriptional regulator BolA complement(2546399..2546716) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903528.1 CDS STU288_12155 NC_021151.1 2547020 2547598 D COG3056 Uncharacterized lipoprotein; hypothetical protein 2547020..2547598 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903529.1 CDS ampG NC_021151.1 2547642 2549117 D COG0477 Permeases of the major facilitator superfamily; muropeptide transporter 2547642..2549117 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903530.1 CDS STU288_12165 NC_021151.1 2549570 2550526 D COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome o ubiquinol oxidase subunit II 2549570..2550526 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903531.1 CDS STU288_12170 NC_021151.1 2550537 2552528 D COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome o ubiquinol oxidase subunit I 2550537..2552528 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903532.1 CDS STU288_12175 NC_021151.1 2552518 2553132 D COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome o ubiquinol oxidase subunit III 2552518..2553132 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903533.1 CDS STU288_12180 NC_021151.1 2553132 2553461 D COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; cytochrome o ubiquinol oxidase subunit IV 2553132..2553461 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903534.1 CDS STU288_12185 NC_021151.1 2553473 2554363 D COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); protoheme IX farnesyltransferase 2553473..2554363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903535.1 CDS STU288_12190 NC_021151.1 2554445 2555938 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(2554445..2555938) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903536.1 CDS STU288_12195 NC_021151.1 2555950 2557461 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(2555950..2557461) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903537.1 CDS STU288_12200 NC_021151.1 2557998 2559362 D COG0477 Permeases of the major facilitator superfamily; inner membrane transport protein YajR 2557998..2559362 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903538.1 CDS STU288_12205 NC_021151.1 2559409 2559900 R COG1666 Uncharacterized protein conserved in bacteria; nucleotide-binding protein complement(2559409..2559900) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903539.1 CDS STU288_12210 NC_021151.1 2560026 2560937 D COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase 2560026..2560937 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903540.1 CDS STU288_12215 NC_021151.1 2560900 2561490 D COG0693 Putative intracellular protease/amidase; oxidative-stress-resistance chaperone 2560900..2561490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903541.1 CDS STU288_12220 NC_021151.1 2561587 2562396 R COG0637 Predicted phosphatase/phosphohexomutase; phosphonoacetaldehyde hydrolase complement(2561587..2562396) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903542.1 CDS STU288_12225 NC_021151.1 2562406 2563509 R COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; 2-aminoethylphosphonate--pyruvate transaminase complement(2562406..2563509) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903543.1 CDS STU288_12230 NC_021151.1 2563649 2564368 D COG2188 Transcriptional regulators; transcriptional regulator protein 2563649..2564368 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903544.1 CDS STU288_12235 NC_021151.1 2564566 2565579 D COG1840 ABC-type Fe3+ transport system, periplasmic component; 2-aminoethylphosphonate ABC transporter substrate-binding protein 2564566..2565579 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903545.1 CDS STU288_12240 NC_021151.1 2565585 2566694 D COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; 2-aminoethylphosphonate ABC transporter ATP-binding protein 2565585..2566694 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903546.1 CDS STU288_12245 NC_021151.1 2566697 2567557 D COG0555 ABC-type sulfate transport system, permease component; 2-aminoethylphosphonate transport system permease PhnU 2566697..2567557 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903547.1 CDS STU288_12250 NC_021151.1 2567560 2568357 D COG1177 ABC-type spermidine/putrescine transport system, permease component II; 2-aminoethylphosphonate ABC transporter permease 2567560..2568357 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903548.1 CDS STU288_12255 NC_021151.1 2568401 2569849 R COG0301 Thiamine biosynthesis ATP pyrophosphatase; tRNA s(4)U8 sulfurtransferase complement(2568401..2569849) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903549.1 CDS STU288_12260 NC_021151.1 2570059 2570301 D COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 2570059..2570301 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903550.1 CDS STU288_12265 NC_021151.1 2570302 2571201 D COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 2570302..2571201 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903551.1 CDS STU288_12270 NC_021151.1 2571225 2573087 D COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 2571225..2573087 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903552.1 CDS STU288_12275 NC_021151.1 2573144 2574118 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative oxidoreductase 2573144..2574118 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903553.1 CDS STU288_12280 NC_021151.1 2574222 2574737 R COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A complement(2574222..2574737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903554.1 CDS STU288_12285 NC_021151.1 2574715 2575692 R COG0611 Thiamine monophosphate kinase; thiamine monophosphate kinase complement(2574715..2575692) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903555.1 CDS nusB NC_021151.1 2575771 2576190 R COG0781 Transcription termination factor; transcription antitermination protein NusB complement(2575771..2576190) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903556.1 CDS ribH NC_021151.1 2576211 2576681 R COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase complement(2576211..2576681) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903557.1 CDS ribD NC_021151.1 2576770 2577873 R COG0117 Pyrimidine deaminase; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase complement(2576770..2577873) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903558.1 CDS nrdR NC_021151.1 2577877 2578326 R COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR complement(2577877..2578326) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903559.1 CDS STU288_12310 NC_021151.1 2578478 2579017 D hypothetical protein 2578478..2579017 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903560.1 CDS STU288_12315 NC_021151.1 2579317 2580180 D COG3248 Nucleoside-binding outer membrane protein; nucleoside-specific channel-forming protein Tsx 2579317..2580180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903561.1 CDS STU288_12320 NC_021151.1 2580264 2580371 R hypothetical protein complement(2580264..2580371) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903562.1 CDS STU288_12325 NC_021151.1 2580809 2581156 R COG1403 Restriction endonuclease; hypothetical protein complement(2580809..2581156) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903563.1 CDS STU288_12330 NC_021151.1 2581326 2582018 R COG2378 Predicted transcriptional regulator; putative HTH-type transcriptional regulator yobV complement(2581326..2582018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903564.1 CDS STU288_12335 NC_021151.1 2582044 2582409 R COG3324 Predicted enzyme related to lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2582044..2582409) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903565.1 CDS secF NC_021151.1 2582557 2583528 R COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF complement(2582557..2583528) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903566.1 CDS secD NC_021151.1 2583539 2585386 R COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD complement(2583539..2585386) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903567.1 CDS yajC NC_021151.1 2585414 2585746 R COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC complement(2585414..2585746) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903568.1 CDS tgt NC_021151.1 2585769 2586896 R COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(2585769..2586896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903569.1 CDS queA NC_021151.1 2587093 2588157 R COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(2587093..2588157) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903570.1 CDS STU288_12365 NC_021151.1 2588251 2588832 D COG3124 Uncharacterized protein conserved in bacteria; acyl carrier protein phosphodiesterase 2588251..2588832 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903571.1 CDS STU288_12370 NC_021151.1 2589042 2589644 D COG0450 Peroxiredoxin; peroxidase 2589042..2589644 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903572.1 CDS STU288_12375 NC_021151.1 2589716 2591533 R COG0366 Glycosidases; maltodextrin glucosidase complement(2589716..2591533) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903573.1 CDS proY NC_021151.1 2591695 2593065 R COG1113 Gamma-aminobutyrate permease and related permeases; proline-specific permease complement(2591695..2593065) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903574.1 CDS STU288_12385 NC_021151.1 2593140 2594459 R COG1114 Branched-chain amino acid permeases; branched-chain amino acid transport system 2 carrier protein BrnQ complement(2593140..2594459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903575.1 CDS phoR NC_021151.1 2594868 2596163 R COG0642 Signal transduction histidine kinase; phosphate regulon sensor protein complement(2594868..2596163) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903576.1 CDS STU288_12395 NC_021151.1 2596233 2596922 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator PhoB complement(2596233..2596922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903577.1 CDS STU288_12400 NC_021151.1 2596964 2597095 D hypothetical protein 2596964..2597095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903578.1 CDS STU288_12405 NC_021151.1 2597137 2598339 D COG0420 DNA repair exonuclease; exonuclease subunit SbcD 2597137..2598339 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903579.1 CDS STU288_12410 NC_021151.1 2598336 2601476 D COG0419 ATPase involved in DNA repair; exonuclease subunit SbcC 2598336..2601476 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903580.1 CDS STU288_12415 NC_021151.1 2601649 2602821 D COG2814 Arabinose efflux permease; MFS transport protein AraJ 2601649..2602821 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903581.1 CDS STU288_12420 NC_021151.1 2602713 2602895 R hypothetical protein complement(2602713..2602895) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903582.1 CDS STU288_12425 NC_021151.1 2602843 2603751 R COG1940 Transcriptional regulator/sugar kinase; fructokinase complement(2602843..2603751) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903583.1 CDS rdgC NC_021151.1 2603877 2604788 D COG2974 DNA recombination-dependent growth factor C; recombination associated protein 2603877..2604788 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903584.1 CDS STU288_12435 NC_021151.1 2604826 2605110 R COG3123 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2604826..2605110) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903585.1 CDS STU288_12440 NC_021151.1 2605181 2605858 R hypothetical protein complement(2605181..2605858) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903586.1 CDS STU288_12445 NC_021151.1 2606109 2606300 R hypothetical protein complement(2606109..2606300) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903587.1 CDS aroL NC_021151.1 2606327 2606872 R COG0703 Shikimate kinase; shikimate kinase II complement(2606327..2606872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903588.1 CDS STU288_12455 NC_021151.1 2607057 2607512 R COG1671 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2607057..2607512) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903589.1 CDS STU288_12460 NC_021151.1 2607652 2608461 D COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2607652..2608461 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903590.1 CDS adrA NC_021151.1 2608476 2609588 R COG2199 FOG: GGDEF domain; diguanylate cyclase AdrA complement(2608476..2609588) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903591.1 CDS STU288_12470 NC_021151.1 2609680 2610000 R hypothetical protein complement(2609680..2610000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903592.1 CDS STU288_12475 NC_021151.1 2610352 2610612 R anti-RssB factor complement(2610352..2610612) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903593.1 CDS STU288_12480 NC_021151.1 2610909 2612120 R COG0477 Permeases of the major facilitator superfamily; Drug efflux system protein MdtG complement(2610909..2612120) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903594.1 CDS STU288_12485 NC_021151.1 2612289 2613002 R COG3921 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2612289..2613002) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903595.1 CDS ddl NC_021151.1 2613080 2614174 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 2613080..2614174 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903596.1 CDS STU288_12495 NC_021151.1 2614200 2614415 R hypothetical protein complement(2614200..2614415) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903597.1 CDS STU288_12500 NC_021151.1 2614683 2614991 D Inner membrane protein yaiY 2614683..2614991 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903598.1 CDS STU288_12505 NC_021151.1 2615029 2616123 R COG1201 Lhr-like helicases; lipoprotein complement(2615029..2616123) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903599.1 CDS STU288_12510 NC_021151.1 2616138 2617256 R COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components; microcin B17 transporter complement(2616138..2617256) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903600.1 CDS STU288_12515 NC_021151.1 2617705 2618862 D COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactam binding protein AmpH 2617705..2618862 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903601.1 CDS STU288_12520 NC_021151.1 2618907 2619530 R DNA-binding transcriptional regulator complement(2618907..2619530) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903602.1 CDS STU288_12525 NC_021151.1 2619616 2622552 R COG3468 Type V secretory pathway, adhesin AidA; flagellar protein complement(2619616..2622552) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903603.1 CDS STU288_12530 NC_021151.1 2623065 2624039 D COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 2623065..2624039 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903604.1 CDS prpE NC_021151.1 2624143 2626029 R COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; propionyl-CoA synthetase complement(2624143..2626029) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903605.1 CDS prpD NC_021151.1 2626070 2627521 R COG2079 Uncharacterized protein involved in propionate catabolism; 2-methylcitrate dehydratase complement(2626070..2627521) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903606.1 CDS STU288_12545 NC_021151.1 2627561 2628730 R COG0372 Citrate synthase; methylcitrate synthase complement(2627561..2628730) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903607.1 CDS prpB NC_021151.1 2628853 2629740 R COG2513 PEP phosphonomutase and related enzymes; 2-methylisocitrate lyase complement(2628853..2629740) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903608.1 CDS STU288_12555 NC_021151.1 2630004 2631629 D COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; propionate catabolism operon regulatory protein PrpR 2630004..2631629 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903609.1 CDS STU288_12560 NC_021151.1 2631765 2632040 R hypothetical protein complement(2631765..2632040) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903610.1 CDS STU288_12565 NC_021151.1 2632272 2632904 D COG1280 Putative threonine efflux protein; Threonine efflux protein 2632272..2632904 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903611.1 CDS STU288_12570 NC_021151.1 2632945 2635035 R COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrioxamine receptor complement(2632945..2635035) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903612.1 CDS STU288_12575 NC_021151.1 2635199 2636203 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(2635199..2636203) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903613.1 CDS STU288_12580 NC_021151.1 2636409 2636540 R hypothetical protein complement(2636409..2636540) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903614.1 CDS STU288_12585 NC_021151.1 2636540 2637550 R COG1294 Cytochrome bd-type quinol oxidase, subunit 2; terminal oxidase subunit II complement(2636540..2637550) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903615.1 CDS STU288_12590 NC_021151.1 2637547 2638950 R COG1271 Cytochrome bd-type quinol oxidase, subunit 1; putative terminal oxidase subunit I complement(2637547..2638950) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903616.1 CDS STU288_12595 NC_021151.1 2639067 2639168 R hypothetical protein complement(2639067..2639168) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903617.1 CDS STU288_12600 NC_021151.1 2639445 2642414 R COG3587 Restriction endonuclease; type III restriction-modification system StyLTI enzyme res complement(2639445..2642414) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903618.1 CDS STU288_12605 NC_021151.1 2642427 2644385 R COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system enzyme (StyLTI) modification methylase complement(2642427..2644385) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903619.1 CDS STU288_12610 NC_021151.1 2644574 2645827 R COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein complement(2644574..2645827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903620.1 CDS STU288_12615 NC_021151.1 2646120 2646314 R COG2608 Copper chaperone; putative copper chaperone complement(2646120..2646314) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903621.1 CDS STU288_12620 NC_021151.1 2646392 2646856 R COG0789 Predicted transcriptional regulators; MerR family transcriptional regulator complement(2646392..2646856) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903622.1 CDS STU288_12625 NC_021151.1 2646868 2649156 R COG2217 Cation transport ATPase; putative cation transport ATPase complement(2646868..2649156) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903623.1 CDS STU288_12630 NC_021151.1 2649433 2650659 D COG0845 Membrane-fusion protein; putative auxiliary transport protein, membrane fusion protein (MFP) family 2649433..2650659 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903624.1 CDS STU288_12635 NC_021151.1 2650656 2653823 D COG0841 Cation/multidrug efflux pump; cation efflux protein 2650656..2653823 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903625.1 CDS STU288_12640 NC_021151.1 2653840 2655297 D COG1538 Outer membrane protein; Putative outer membrane efflux protein 2653840..2655297 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903626.1 CDS STU288_12645 NC_021151.1 2655367 2655726 R cytochrome c type biogenesis protein CycH complement(2655367..2655726) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903627.1 CDS STU288_12650 NC_021151.1 2655784 2656008 R putative inner membrane protein complement(2655784..2656008) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903628.1 CDS STU288_12655 NC_021151.1 2656019 2656660 R COG2771 DNA-binding HTH domain-containing proteins; transcriptional regulator complement(2656019..2656660) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903629.1 CDS STU288_12660 NC_021151.1 2656804 2657328 R COG1629 Outer membrane receptor proteins, mostly Fe transport; Attachment invasion locus protein Flags: Precursor complement(2656804..2657328) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903630.1 CDS STU288_12665 NC_021151.1 2657729 2658217 R putative inner membrane protein complement(2657729..2658217) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903631.1 CDS STU288_12670 NC_021151.1 2658190 2658933 R COG3710 DNA-binding winged-HTH domains; transmembrane regulator complement(2658190..2658933) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903632.1 CDS STU288_12675 NC_021151.1 2659033 2660583 R COG4943 Predicted signal transduction protein containing sensor and EAL domains; Putative diguanylate cyclase/phosphodiesterase domain 1 complement(2659033..2660583) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903633.1 CDS STU288_12690 NC_021151.1 2661379 2662113 R putative inner membrane protein complement(2661379..2662113) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903634.1 CDS STU288_12695 NC_021151.1 2662777 2663313 D COG3539 P pilus assembly protein, pilin FimA; Fimbrial protein precursor 2662777..2663313 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903635.1 CDS STU288_12700 NC_021151.1 2663375 2664136 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StbB 2663375..2664136 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903636.1 CDS STU288_12705 NC_021151.1 2664120 2666681 D COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StbC 2664120..2666681 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903637.1 CDS STU288_12710 NC_021151.1 2666686 2668011 D fimbrial usher protein StbD 2666686..2668011 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903638.1 CDS STU288_12715 NC_021151.1 2667977 2668735 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone StbE 2667977..2668735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903639.1 CDS STU288_12720 NC_021151.1 2668782 2669180 R putative outer membrane protein complement(2668782..2669180) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903640.1 CDS STU288_12725 NC_021151.1 2669871 2670143 D putative cytoplasmic protein 2669871..2670143 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903641.1 CDS STU288_12730 NC_021151.1 2670088 2671053 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2670088..2671053) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903642.1 CDS STU288_12735 NC_021151.1 2671087 2672001 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hydrolase or acyltransferase complement(2671087..2672001) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903643.1 CDS STU288_12740 NC_021151.1 2672001 2672879 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); fumarylacetoacetate (faa) hydrolase complement(2672001..2672879) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903644.1 CDS STU288_12745 NC_021151.1 2672894 2673520 R COG0066 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit complement(2672894..2673520) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903645.1 CDS STU288_12750 NC_021151.1 2673522 2674943 R COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit complement(2673522..2674943) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903646.1 CDS STU288_12755 NC_021151.1 2675075 2676307 R COG0477 Permeases of the major facilitator superfamily; putative permease complement(2675075..2676307) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903647.1 CDS STU288_12760 NC_021151.1 2676654 2676953 R hypothetical protein complement(2676654..2676953) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903648.1 CDS STU288_12775 NC_021151.1 2677719 2678519 D COG2801 Transposase and inactivated derivatives; IS3 transposase 2677719..2678519 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903649.1 CDS STU288_12780 NC_021151.1 2679179 2679541 D Bactoprenol-linked glucose translocase 2679179..2679541 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903650.1 CDS STU288_12785 NC_021151.1 2679538 2680470 D COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase 2679538..2680470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903651.1 CDS STU288_12790 NC_021151.1 2680460 2681917 D GtrC 2680460..2681917 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903652.1 CDS STU288_12795 NC_021151.1 2681976 2683979 R tail spike protein complement(2681976..2683979) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903653.1 CDS STU288_12800 NC_021151.1 2684115 2684363 D regulatory protein 2684115..2684363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903654.1 CDS STU288_12805 NC_021151.1 2684816 2686792 R COG2183 Transcriptional accessory protein; DNA transfer protein complement(2684816..2686792) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903655.1 CDS STU288_12810 NC_021151.1 2686792 2688228 R DNA transfer protein complement(2686792..2688228) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903656.1 CDS STU288_12815 NC_021151.1 2688239 2688928 R DNA transfer protein complement(2688239..2688928) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903657.1 CDS STU288_12820 NC_021151.1 2688931 2689386 R hypothetical protein complement(2688931..2689386) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903658.1 CDS STU288_12825 NC_021151.1 2689386 2690087 R gp26 complement(2689386..2690087) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903659.1 CDS STU288_12830 NC_021151.1 2690091 2691509 R putative DNA stabilization protein complement(2690091..2691509) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903660.1 CDS STU288_12835 NC_021151.1 2691469 2691969 R gp4 complement(2691469..2691969) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903661.1 CDS STU288_12840 NC_021151.1 2691953 2692513 R hypothetical protein complement(2691953..2692513) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903662.1 CDS STU288_12845 NC_021151.1 2692554 2693846 R putative coat protein complement(2692554..2693846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903663.1 CDS STU288_12850 NC_021151.1 2693846 2694757 R putative scaffolding protein complement(2693846..2694757) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903664.1 CDS STU288_12855 NC_021151.1 2694771 2696948 R portal protein complement(2694771..2696948) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903665.1 CDS STU288_12860 NC_021151.1 2696948 2698456 R COG5565 Bacteriophage terminase large (ATPase) subunit and inactivated derivatives; putative terminase large subunit complement(2696948..2698456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903666.1 CDS STU288_12865 NC_021151.1 2698434 2698922 R terminase small subunit complement(2698434..2698922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903667.1 CDS STU288_12870 NC_021151.1 2699330 2699719 R COG2308 Uncharacterized conserved protein; hypothetical protein complement(2699330..2699719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903668.1 CDS STU288_12875 NC_021151.1 2699723 2699965 R hypothetical protein complement(2699723..2699965) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903669.1 CDS STU288_12880 NC_021151.1 2700188 2700718 R hypothetical protein complement(2700188..2700718) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903670.1 CDS STU288_12885 NC_021151.1 2700931 2701398 R gp15 complement(2700931..2701398) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903671.1 CDS STU288_12890 NC_021151.1 2701395 2701865 R COG3772 Phage-related lysozyme (muraminidase); phage lysozyme complement(2701395..2701865) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903672.1 CDS STU288_12895 NC_021151.1 2701870 2702073 R COG0477 Permeases of the major facilitator superfamily; gp13 holin, class II complement(2701870..2702073) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903673.1 CDS STU288_12900 NC_021151.1 2702504 2703277 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; hypothetical protein complement(2702504..2703277) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903674.1 CDS STU288_12905 NC_021151.1 2703274 2703453 R hypothetical protein complement(2703274..2703453) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903675.1 CDS STU288_12910 NC_021151.1 2703434 2703637 R hypothetical protein complement(2703434..2703637) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903676.1 CDS STU288_12915 NC_021151.1 2703634 2703858 R putative protein ninY complement(2703634..2703858) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903677.1 CDS STU288_12920 NC_021151.1 2703855 2704466 R protein NinG from prophage complement(2703855..2704466) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903678.1 CDS STU288_12925 NC_021151.1 2704459 2704635 R hypothetical protein complement(2704459..2704635) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903679.1 CDS STU288_12930 NC_021151.1 2704628 2704969 R hypothetical protein complement(2704628..2704969) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903680.1 CDS STU288_12935 NC_021151.1 2704972 2705148 R hypothetical protein complement(2704972..2705148) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903681.1 CDS STU288_12940 NC_021151.1 2705285 2705722 R recombination protein ninB from phage origin complement(2705285..2705722) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903682.1 CDS STU288_12945 NC_021151.1 2705719 2705799 R hypothetical protein complement(2705719..2705799) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903683.1 CDS STU288_12950 NC_021151.1 2705796 2706065 R hypothetical protein complement(2705796..2706065) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903684.1 CDS STU288_12955 NC_021151.1 2706062 2707438 R COG0305 Replicative DNA helicase; replicative DNA helicase complement(2706062..2707438) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903685.1 CDS STU288_12960 NC_021151.1 2707435 2708256 R bacteriophage replication protein O complement(2707435..2708256) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903686.1 CDS STU288_12965 NC_021151.1 2708243 2708404 R prophage protein complement(2708243..2708404) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903687.1 CDS STU288_12970 NC_021151.1 2708439 2708720 R transcriptional activator-regulatory protein complement(2708439..2708720) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903688.1 CDS STU288_12975 NC_021151.1 2708831 2709046 R COG4197 Uncharacterized protein conserved in bacteria, prophage-related; phage transcriptional regulator complement(2708831..2709046) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903689.1 CDS STU288_12980 NC_021151.1 2709157 2709846 D COG2932 Predicted transcriptional regulator; repressor protein cI 2709157..2709846 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903690.1 CDS STU288_12985 NC_021151.1 2710047 2711090 D hypothetical protein 2710047..2711090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903691.1 CDS STU288_12990 NC_021151.1 2711129 2711332 R hypothetical protein complement(2711129..2711332) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903692.1 CDS STU288_12995 NC_021151.1 2711696 2711998 D hypothetical protein 2711696..2711998 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903693.1 CDS STU288_13000 NC_021151.1 2712011 2712598 R superinfection exclusion protein B complement(2712011..2712598) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903694.1 CDS STU288_13005 NC_021151.1 2712812 2713006 D putative antirestriction protein 2712812..2713006 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903695.1 CDS STU288_13010 NC_021151.1 2713144 2713548 R hypothetical protein complement(2713144..2713548) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903696.1 CDS STU288_13015 NC_021151.1 2713594 2713719 D hypothetical protein 2713594..2713719 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903697.1 CDS STU288_13020 NC_021151.1 2713753 2714040 D hypothetical protein 2713753..2714040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903698.1 CDS STU288_13025 NC_021151.1 2714040 2714165 D hypothetical protein 2714040..2714165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903699.1 CDS STU288_13030 NC_021151.1 2714403 2714630 D bacteriophage ST64T protein 17 2714403..2714630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903700.1 CDS STU288_13035 NC_021151.1 2714700 2714873 D C3-like protein 2714700..2714873 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903701.1 CDS STU288_13040 NC_021151.1 2714821 2715042 D bacteriophage ST104 protein Kil 2714821..2715042 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903702.1 CDS STU288_13045 NC_021151.1 2715032 2715175 D hypothetical protein 2715032..2715175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903703.1 CDS STU288_13050 NC_021151.1 2715172 2715879 D COG4712 Uncharacterized protein conserved in bacteria; gp49 2715172..2715879 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903704.1 CDS STU288_13055 NC_021151.1 2715879 2716163 D hypothetical protein 2715879..2716163 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903705.1 CDS STU288_13060 NC_021151.1 2716210 2716503 D anti-RecBCD protein 2 2716210..2716503 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903706.1 CDS STU288_13065 NC_021151.1 2716514 2716684 D hypothetical protein 2716514..2716684 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903707.1 CDS STU288_13070 NC_021151.1 2716681 2717190 D hypothetical protein 2716681..2717190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903708.1 CDS STU288_13075 NC_021151.1 2717260 2718051 D hypothetical protein 2717260..2718051 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903709.1 CDS STU288_13080 NC_021151.1 2718051 2718335 D hypothetical protein 2718051..2718335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903710.1 CDS STU288_13085 NC_021151.1 2718328 2718612 D hypothetical protein 2718328..2718612 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903711.1 CDS STU288_13090 NC_021151.1 2718684 2718821 D hypothetical protein 2718684..2718821 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903712.1 CDS STU288_13095 NC_021151.1 2718824 2719174 D excisionase 2718824..2719174 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903713.1 CDS STU288_13100 NC_021151.1 2719051 2720214 D COG0582 Integrase; integrase 2719051..2720214 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903714.1 CDS proA NC_021151.1 2720420 2721670 R COG0014 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(2720420..2721670) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903715.1 CDS STU288_13110 NC_021151.1 2721682 2722785 R COG0263 Glutamate 5-kinase; gamma-glutamyl kinase complement(2721682..2722785) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903716.1 CDS STU288_13115 NC_021151.1 2723068 2724120 D COG3203 Outer membrane protein (porin); outer membrane phosphoporin protein E 2723068..2724120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903717.1 CDS STU288_13120 NC_021151.1 2724171 2724572 R DNA-binding transcriptional regulator Crl complement(2724171..2724572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903718.1 CDS frsA NC_021151.1 2724630 2725874 R COG1073 Hydrolases of the alpha/beta superfamily; fermentation/respiration switch protein complement(2724630..2725874) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903719.1 CDS STU288_13130 NC_021151.1 2725963 2726421 R COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; xanthine-guanine phosphoribosyltransferase complement(2725963..2726421) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903720.1 CDS STU288_13135 NC_021151.1 2726670 2728127 D COG2195 Di- and tripeptidases; aminoacyl-histidine dipeptidase 2726670..2728127 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903721.1 CDS prfH NC_021151.1 2728283 2728897 R COG1186 Protein chain release factor B; peptide chain release factor-like protein complement(2728283..2728897) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903722.1 CDS STU288_13145 NC_021151.1 2728894 2729055 R COG1690 Uncharacterized conserved protein; hypothetical protein complement(2728894..2729055) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903723.1 CDS STU288_13150 NC_021151.1 2729052 2730026 R COG1690 Uncharacterized conserved protein; hypothetical protein complement(2729052..2730026) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903724.1 CDS STU288_13155 NC_021151.1 2730245 2731300 R COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV complement(2730245..2731300) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903725.1 CDS STU288_13160 NC_021151.1 2731550 2732290 D COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein 2731550..2732290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903726.1 CDS STU288_13165 NC_021151.1 2732261 2733028 R COG0121 Predicted glutamine amidotransferase; Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] Hexosephosphate aminotransferase complement(2732261..2733028) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903727.1 CDS gmhA NC_021151.1 2733241 2733819 R COG0279 Phosphoheptose isomerase; phosphoheptose isomerase complement(2733241..2733819) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903728.1 CDS fadE NC_021151.1 2734059 2736503 D COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 2734059..2736503 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903729.1 CDS STU288_13180 NC_021151.1 2736612 2737379 D COG0388 Predicted amidohydrolase; C-N hydrolase family amidase 2736612..2737379 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903730.1 CDS STU288_13185 NC_021151.1 2737750 2738157 D COG0732 Restriction endonuclease S subunits; putative secreted protein 2737750..2738157 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903731.1 CDS STU288_13190 NC_021151.1 2738488 2739207 D COG3637 Opacity protein and related surface antigens; adhesin/invasin protein PagN 2738488..2739207 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903732.1 CDS STU288_13195 NC_021151.1 2739543 2740490 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2739543..2740490) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903733.1 CDS STU288_13200 NC_021151.1 2740693 2740824 R Putative transposase complement(2740693..2740824) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903734.1 CDS STU288_13205 NC_021151.1 2740965 2741225 R hypothetical protein complement(2740965..2741225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903735.1 CDS STU288_13210 NC_021151.1 2741305 2742126 R COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein complement(2741305..2742126) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903736.1 CDS STU288_13215 NC_021151.1 2742532 2743002 R pilin structural protein SafD complement(2742532..2743002) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903737.1 CDS STU288_13220 NC_021151.1 2743024 2745534 R COG3188 P pilus assembly protein, porin PapC; pilin outer membrane usher protein SafC complement(2743024..2745534) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903738.1 CDS STU288_13225 NC_021151.1 2745558 2746295 R COG3121 P pilus assembly protein, chaperone PapD; pili assembly chaperone protein SafB complement(2745558..2746295) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903739.1 CDS STU288_13230 NC_021151.1 2746379 2746879 R Saf-pilin pilus formation protein SafA complement(2746379..2746879) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903740.1 CDS STU288_13235 NC_021151.1 2747641 2747922 R COG2801 Transposase and inactivated derivatives; hypothetical protein complement(2747641..2747922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903741.1 CDS STU288_13240 NC_021151.1 2748148 2748345 R COG2801 Transposase and inactivated derivatives; putative transposase complement(2748148..2748345) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903742.1 CDS STU288_13245 NC_021151.1 2748398 2748646 D putative cytoplasmic protein 2748398..2748646 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903743.1 CDS STU288_13250 NC_021151.1 2748619 2748711 D hypothetical protein 2748619..2748711 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903744.1 CDS STU288_13255 NC_021151.1 2748748 2748999 R hypothetical protein complement(2748748..2748999) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903745.1 CDS STU288_13260 NC_021151.1 2749497 2749772 D hypothetical protein 2749497..2749772 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903746.1 CDS STU288_13265 NC_021151.1 2749825 2750262 R putative cytoplasmic protein complement(2749825..2750262) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903747.1 CDS STU288_13270 NC_021151.1 2750300 2750440 R hypothetical protein complement(2750300..2750440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903748.1 CDS STU288_13275 NC_021151.1 2750825 2751271 R hypothetical protein complement(2750825..2751271) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903749.1 CDS STU288_13280 NC_021151.1 2751265 2752098 R COG3209 Rhs family protein; Rhs-family protein complement(2751265..2752098) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903750.1 CDS STU288_13285 NC_021151.1 2752198 2752461 R hypothetical protein complement(2752198..2752461) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903751.1 CDS STU288_13290 NC_021151.1 2752455 2756549 R COG3209 Rhs family protein; putative RHS-like protein complement(2752455..2756549) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903752.1 CDS STU288_13295 NC_021151.1 2756568 2757014 R COG5435 Uncharacterized conserved protein; hypothetical protein complement(2756568..2757014) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903753.1 CDS STU288_13300 NC_021151.1 2757038 2759227 R COG3501 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(2757038..2759227) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903754.1 CDS STU288_13305 NC_021151.1 2759624 2760142 R SPI-6 associated protein complement(2759624..2760142) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903755.1 CDS STU288_13310 NC_021151.1 2760169 2760585 R COG4893 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2760169..2760585) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903756.1 CDS STU288_13315 NC_021151.1 2760582 2761370 R COG3913 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(2760582..2761370) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903757.1 CDS STU288_13320 NC_021151.1 2761370 2765239 R COG3523 Uncharacterized protein conserved in bacteria; putative inner membrane protein complement(2761370..2765239) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903758.1 CDS STU288_13325 NC_021151.1 2765273 2765629 R putative shiga-like toxin A subunit complement(2765273..2765629) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903759.1 CDS STU288_13330 NC_021151.1 2765907 2766680 R membrane protein, virulence associated protein complement(2765907..2766680) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903760.1 CDS STU288_13335 NC_021151.1 2766685 2767989 R COG3455 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2766685..2767989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903761.1 CDS STU288_13340 NC_021151.1 2767986 2769329 R COG3522 Uncharacterized protein conserved in bacteria; type VI secretion protein complement(2767986..2769329) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903762.1 CDS STU288_13345 NC_021151.1 2769333 2769869 R COG3521 Uncharacterized protein conserved in bacteria; putative outer membrane lipoprotein complement(2769333..2769869) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903763.1 CDS STU288_13350 NC_021151.1 2769936 2770421 R COG3157 Hemolysin-coregulated protein (uncharacterized); Protein hcp1 complement(2769936..2770421) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903764.1 CDS STU288_13355 NC_021151.1 2770564 2770935 R putative periplasmic protein complement(2770564..2770935) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903765.1 CDS STU288_13360 NC_021151.1 2770932 2771417 R putative cytoplasmic protein complement(2770932..2771417) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903766.1 CDS STU288_13365 NC_021151.1 2771547 2771654 R lipoprotein complement(2771547..2771654) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903767.1 CDS STU288_13370 NC_021151.1 2771722 2772207 R COG3157 Hemolysin-coregulated protein (uncharacterized); Protein hcp1 complement(2771722..2772207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903768.1 CDS STU288_13375 NC_021151.1 2773093 2774601 R COG3517 Uncharacterized protein conserved in bacteria; SciI protein complement(2773093..2774601) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903769.1 CDS STU288_13380 NC_021151.1 2774625 2775167 R COG3516 Uncharacterized protein conserved in bacteria; SPI-6 associated protein complement(2774625..2775167) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903770.1 CDS STU288_13385 NC_021151.1 2775267 2777906 R COG0542 ATPases with chaperone activity, ATP-binding subunit; SPI-6 associated protein complement(2775267..2777906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903771.1 CDS STU288_13390 NC_021151.1 2778274 2779176 D SPI-6 associated protein 2778274..2779176 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903772.1 CDS STU288_13395 NC_021151.1 2779163 2779987 D COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion; SciE protein 2779163..2779987 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903773.1 CDS STU288_13400 NC_021151.1 2779984 2780478 D COG3518 Uncharacterized protein conserved in bacteria; hypothetical protein 2779984..2780478 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903774.1 CDS STU288_13405 NC_021151.1 2780494 2782377 D COG3519 Uncharacterized protein conserved in bacteria; hypothetical protein 2780494..2782377 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903775.1 CDS STU288_13410 NC_021151.1 2782374 2783369 D COG3520 Uncharacterized protein conserved in bacteria; SPI-6 associated protein 2782374..2783369 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903776.1 CDS STU288_13415 NC_021151.1 2783380 2784435 D COG3515 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 2783380..2784435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903777.1 CDS STU288_13420 NC_021151.1 2784526 2784633 R hypothetical protein complement(2784526..2784633) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903778.1 CDS STU288_13425 NC_021151.1 2784967 2785698 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon complement(2784967..2785698) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903779.1 CDS rnhA NC_021151.1 2785762 2786229 D COG0328 Ribonuclease HI; ribonuclease H 2785762..2786229 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903780.1 CDS STU288_13435 NC_021151.1 2786226 2786948 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(2786226..2786948) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903781.1 CDS STU288_13440 NC_021151.1 2786983 2787738 D COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase 2786983..2787738 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903782.1 CDS mltD NC_021151.1 2787810 2789177 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D 2787810..2789177 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903783.1 CDS STU288_13450 NC_021151.1 2789233 2790003 R COG0500 SAM-dependent methyltransferases; putative methyltransferase complement(2789233..2790003) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903784.1 CDS STU288_13455 NC_021151.1 2790081 2790881 R COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2790081..2790881) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903785.1 CDS STU288_13460 NC_021151.1 2791013 2792188 R COG2814 Arabinose efflux permease; inner membrane transport protein YdhP complement(2791013..2792188) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903786.1 CDS STU288_13465 NC_021151.1 2792293 2793207 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2792293..2793207 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903787.1 CDS dkgB NC_021151.1 2793228 2794031 R COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase B complement(2793228..2794031) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903788.1 CDS STU288_13475 NC_021151.1 2800034 2802607 R COG0542 ATPases with chaperone activity, ATP-binding subunit; protein disaggregation chaperone complement(2800034..2802607) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903789.1 CDS STU288_13480 NC_021151.1 2802737 2803468 R COG1496 Uncharacterized conserved protein; hypothetical protein complement(2802737..2803468) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903790.1 CDS rluD NC_021151.1 2803465 2804445 R COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase D complement(2803465..2804445) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903791.1 CDS STU288_13490 NC_021151.1 2804577 2805314 D COG4105 DNA uptake lipoprotein; outer membrane biogenesis protein BamD 2804577..2805314 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903792.1 CDS STU288_13495 NC_021151.1 2805586 2805924 D COG1544 Ribosome-associated protein Y (PSrp-1); translation inhibitor protein RaiA 2805586..2805924 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903793.1 CDS pheA NC_021151.1 2806175 2807335 D COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydratase 2806175..2807335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903794.1 CDS STU288_13505 NC_021151.1 2807296 2808204 R COG3386 Gluconolactonase; SMP-30/Gluconolaconase/LRE domain-containing protein complement(2807296..2808204) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903795.1 CDS tyrA NC_021151.1 2808262 2809383 R COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydrogenase complement(2808262..2809383) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903796.1 CDS STU288_13515 NC_021151.1 2809393 2810463 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2809393..2810463) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903797.1 CDS STU288_13520 NC_021151.1 2810903 2811421 D hypothetical protein 2810903..2811421 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903798.1 CDS STU288_13525 NC_021151.1 2811414 2812634 D COG2199 FOG: GGDEF domain; inner membrane diguanylate cyclase 2811414..2812634 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903799.1 CDS rplS NC_021151.1 2812791 2813138 R COG0335 Ribosomal protein L19; 50S ribosomal protein L19 complement(2812791..2813138) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903800.1 CDS trmD NC_021151.1 2813179 2813946 R COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase complement(2813179..2813946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903801.1 CDS rimM NC_021151.1 2813991 2814539 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(2813991..2814539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903802.1 CDS rpsP NC_021151.1 2814558 2814806 R COG0228 Ribosomal protein S16; 30S ribosomal protein S16 complement(2814558..2814806) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903803.1 CDS STU288_13550 NC_021151.1 2815120 2816481 R COG0541 Signal recognition particle GTPase; signal recognition particle protein complement(2815120..2816481) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903804.1 CDS STU288_13555 NC_021151.1 2816647 2817438 D COG4137 ABC-type uncharacterized transport system, permease component; Cytochrome c biogenesis protein ccsA 2816647..2817438 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903805.1 CDS STU288_13560 NC_021151.1 2817548 2818744 D COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 2817548..2818744 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903806.1 CDS STU288_13565 NC_021151.1 2818865 2819470 D hypothetical protein 2818865..2819470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903807.1 CDS STU288_13570 NC_021151.1 2819505 2820095 R COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE complement(2819505..2820095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903808.1 CDS ppnK NC_021151.1 2820218 2821096 D COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 2820218..2821096 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903809.1 CDS STU288_13580 NC_021151.1 2821182 2822843 D COG0497 ATPase involved in DNA repair; recombination and repair protein 2821182..2822843 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903810.1 CDS STU288_13585 NC_021151.1 2822992 2823330 D COG2913 Small protein A (tmRNA-binding); outer membrane biogenesis protein BamE 2822992..2823330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903811.1 CDS STU288_13590 NC_021151.1 2823496 2823786 R COG2914 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2823496..2823786) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903812.1 CDS STU288_13595 NC_021151.1 2823776 2824213 R COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein complement(2823776..2824213) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903813.1 CDS smpB NC_021151.1 2824402 2824884 D COG0691 tmRNA-binding protein; SsrA-binding protein 2824402..2824884 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903814.1 CDS STU288_13605 NC_021151.1 2825498 2836972 D hypothetical protein 2825498..2836972 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903815.1 CDS STU288_13610 NC_021151.1 2837037 2838446 D COG1538 Outer membrane protein; Outer membrane efflux protein 2837037..2838446 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903816.1 CDS STU288_13615 NC_021151.1 2838443 2840623 D COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Type I secretion protein, ATP-binding protein 2838443..2840623 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903817.1 CDS STU288_13620 NC_021151.1 2840604 2841794 D COG0845 Membrane-fusion protein; HlyD family secretion protein 2840604..2841794 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903818.1 CDS STU288_13625 NC_021151.1 2842346 2842564 R late control-like protein complement(2842346..2842564) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903819.1 CDS STU288_13630 NC_021151.1 2842633 2843733 R COG3500 Phage protein D; late control-like protein complement(2842633..2843733) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903820.1 CDS STU288_13635 NC_021151.1 2843730 2844215 R COG3499 Phage protein U; bacteriophage tail protein complement(2843730..2844215) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903821.1 CDS STU288_13640 NC_021151.1 2844212 2847019 R COG5283 Phage-related tail protein; phage tail-like protein complement(2844212..2847019) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903822.1 CDS STU288_13645 NC_021151.1 2847012 2847131 R gpE-like protein complement(2847012..2847131) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903823.1 CDS STU288_13650 NC_021151.1 2847146 2847448 R phage tail protein E complement(2847146..2847448) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903824.1 CDS STU288_13655 NC_021151.1 2847503 2848018 R COG3498 Phage tail tube protein FII; major tail tube protein complement(2847503..2848018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903825.1 CDS STU288_13660 NC_021151.1 2848028 2849200 R COG3497 Phage tail sheath protein FI; major tail sheath protein complement(2848028..2849200) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903826.1 CDS STU288_13665 NC_021151.1 2849303 2849860 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA invertase-like protein complement(2849303..2849860) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903827.1 CDS STU288_13670 NC_021151.1 2849890 2850909 D hypothetical protein 2849890..2850909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903828.1 CDS STU288_13675 NC_021151.1 2850916 2851323 D tail fiber assembly-likeprotein 2850916..2851323 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903829.1 CDS STU288_13680 NC_021151.1 2851327 2851914 R hypothetical protein complement(2851327..2851914) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903830.1 CDS STU288_13685 NC_021151.1 2851914 2853488 R COG5301 Phage-related tail fibre protein; phage tail-like protein complement(2851914..2853488) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903831.1 CDS STU288_13690 NC_021151.1 2853485 2854090 R COG4385 Bacteriophage P2-related tail formation protein; putative phage tail protein complement(2853485..2854090) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903832.1 CDS STU288_13695 NC_021151.1 2854083 2854991 R COG3948 Phage-related baseplate assembly protein; phage tail-like protein complement(2854083..2854991) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903833.1 CDS STU288_13700 NC_021151.1 2854978 2855337 R COG3628 Phage baseplate assembly protein W; base plate tail-like protein complement(2854978..2855337) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903834.1 CDS STU288_13705 NC_021151.1 2855334 2855912 R COG4540 Phage P2 baseplate assembly protein gpV; phage baseplate assembly-like protein complement(2855334..2855912) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903835.1 CDS STU288_13710 NC_021151.1 2855981 2856427 R phage tail-like protein complement(2855981..2856427) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903836.1 CDS STU288_13715 NC_021151.1 2856420 2856851 R putative phage tail protein complement(2856420..2856851) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903837.1 CDS STU288_13720 NC_021151.1 2856814 2856930 R Fels-2 prophage protein complement(2856814..2856930) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903838.1 CDS STU288_13725 NC_021151.1 2856947 2857375 R regulatory protein complement(2856947..2857375) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903839.1 CDS STU288_13740 NC_021151.1 2857752 2858261 R COG3772 Phage-related lysozyme (muraminidase); phage lysozyme complement(2857752..2858261) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903840.1 CDS STU288_13745 NC_021151.1 2858242 2858457 R secretion protein complement(2858242..2858457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903841.1 CDS STU288_13750 NC_021151.1 2858461 2858664 R COG5004 P2-like prophage tail protein X; phage tail-like protein complement(2858461..2858664) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903842.1 CDS STU288_13755 NC_021151.1 2858664 2859128 R capsid completion protein complement(2858664..2859128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903843.1 CDS STU288_13760 NC_021151.1 2859222 2859875 R terminase-like protein complement(2859222..2859875) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903844.1 CDS STU288_13765 NC_021151.1 2859879 2860961 R major capsid-like protein complement(2859879..2860961) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903845.1 CDS STU288_13770 NC_021151.1 2860978 2861811 R capsid scaffold-like protein complement(2860978..2861811) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903846.1 CDS STU288_13775 NC_021151.1 2861954 2863720 D COG5484 Uncharacterized conserved protein; terminase-like protein 2861954..2863720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903847.1 CDS STU288_13780 NC_021151.1 2863720 2864760 D COG5518 Bacteriophage capsid portal protein; portal vertex-like protein 2863720..2864760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903848.1 CDS STU288_13785 NC_021151.1 2864846 2866543 R hypothetical protein complement(2864846..2866543) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903849.1 CDS STU288_13790 NC_021151.1 2866811 2867488 R hypothetical protein complement(2866811..2867488) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903850.1 CDS STU288_13795 NC_021151.1 2867602 2867835 R COG1158 Transcription termination factor; Prophage protein complement(2867602..2867835) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903851.1 CDS STU288_13800 NC_021151.1 2867846 2868034 R hypothetical protein complement(2867846..2868034) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903852.1 CDS STU288_13805 NC_021151.1 2868187 2870616 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; hypothetical protein complement(2868187..2870616) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903853.1 CDS STU288_13810 NC_021151.1 2870607 2871464 R COG0338 Site-specific DNA methylase; DNA adenine methylase-like protein complement(2870607..2871464) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903854.1 CDS STU288_13815 NC_021151.1 2871461 2871688 R COG1734 DnaK suppressor protein; C4-type zinc finger protein, DksA/TraR family complement(2871461..2871688) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903855.1 CDS STU288_13820 NC_021151.1 2871688 2871921 R hypothetical protein complement(2871688..2871921) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903856.1 CDS STU288_13825 NC_021151.1 2871989 2872330 R hypothetical protein complement(2871989..2872330) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903857.1 CDS STU288_13830 NC_021151.1 2872550 2873008 D hypothetical protein 2872550..2873008 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903858.1 CDS STU288_13835 NC_021151.1 2872956 2873189 R hypothetical protein complement(2872956..2873189) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903859.1 CDS STU288_13840 NC_021151.1 2873197 2873706 R phage regulatory protein complement(2873197..2873706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903860.1 CDS STU288_13845 NC_021151.1 2873742 2873981 R phage regulatory protein complement(2873742..2873981) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903861.1 CDS STU288_13850 NC_021151.1 2874098 2874730 D COG2932 Predicted transcriptional regulator; phage repressor protein cI 2874098..2874730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903862.1 CDS STU288_13855 NC_021151.1 2874734 2875759 D COG0582 Integrase; phage integrase 2874734..2875759 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903863.1 CDS STU288_13860 NC_021151.1 2876088 2877152 D COG0582 Integrase; integrase-like protein 2876088..2877152 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903864.1 CDS STU288_13865 NC_021151.1 2877166 2877333 D COG0582 Integrase; putative integrase 2877166..2877333 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903865.1 CDS STU288_13870 NC_021151.1 2877335 2877973 D hypothetical protein 2877335..2877973 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903866.1 CDS STU288_13875 NC_021151.1 2878591 2879556 D SEC-C motif protein 2878591..2879556 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903867.1 CDS STU288_13880 NC_021151.1 2879891 2880703 R COG2445 Uncharacterized conserved protein; hypothetical protein complement(2879891..2880703) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903868.1 CDS STU288_13885 NC_021151.1 2881169 2881384 D COG3311 Predicted transcriptional regulator; Prophage CP4-57 regulatory protein (AlpA) 2881169..2881384 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903869.1 CDS STU288_13890 NC_021151.1 2881420 2883489 D COG5519 Superfamily II helicase and inactivated derivatives; Phage DNA primase 2881420..2883489 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903870.1 CDS STU288_13895 NC_021151.1 2884106 2885275 D COG0178 Excinuclease ATPase subunit; putative ATPase 2884106..2885275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903871.1 CDS STU288_13900 NC_021151.1 2885272 2886138 D hypothetical protein 2885272..2886138 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903872.1 CDS STU288_13905 NC_021151.1 2886291 2886605 R COG1396 Predicted transcriptional regulators; putative transcriptional regulator complement(2886291..2886605) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903873.1 CDS STU288_13910 NC_021151.1 2886742 2887026 D COG3423 Predicted transcriptional regulator; Ner-like regulatory protein 2886742..2887026 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903874.1 CDS srlA NC_021151.1 2887139 2887660 D COG3730 Phosphotransferase system sorbitol-specific component IIC; PTS system glucitol/sorbitol-specific transporter subunit IIC 2887139..2887660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903875.1 CDS STU288_13920 NC_021151.1 2887657 2888031 D COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 2887657..2888031 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903876.1 CDS srlE NC_021151.1 2888028 2889008 D COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 2888028..2889008 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903877.1 CDS STU288_13930 NC_021151.1 2889019 2890032 D COG0673 Predicted dehydrogenases and related proteins; oxidoreductase, Gfo/Idh/MocA family protein 2889019..2890032 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903878.1 CDS STU288_13935 NC_021151.1 2890378 2891529 D COG1401 GTPase subunit of restriction endonuclease; hexulose 6 phosphate synthase 2890378..2891529 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903879.1 CDS STU288_13940 NC_021151.1 2891603 2892238 R COG0269 3-hexulose-6-phosphate synthase and related proteins; D-arabino-3-hexulose 6-phosphate formaldehyde lyase complement(2891603..2892238) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903880.1 CDS STU288_13945 NC_021151.1 2892262 2892825 R COG0794 Predicted sugar phosphate isomerase involved in capsule formation; putative sugar phosphate aminotransferase complement(2892262..2892825) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903881.1 CDS STU288_13950 NC_021151.1 2892825 2893667 R COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes; glucose-6-phosphate isomerase complement(2892825..2893667) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903882.1 CDS STU288_13955 NC_021151.1 2893797 2895338 R COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; putative phosphotransferase system IIC component complement(2893797..2895338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903883.1 CDS STU288_13960 NC_021151.1 2895561 2897240 D COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2895561..2897240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903884.1 CDS STU288_13965 NC_021151.1 2897240 2897422 D hypothetical protein 2897240..2897422 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903885.1 CDS STU288_13970 NC_021151.1 2898357 2899232 D COG4974 Site-specific recombinase XerD; Phage integrase 2898357..2899232 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903886.1 CDS STU288_13975 NC_021151.1 2899398 2901272 D inner membrane protein 2899398..2901272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903887.1 CDS STU288_13980 NC_021151.1 2901532 2902854 R putative inner membrane protein complement(2901532..2902854) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903888.1 CDS STU288_13985 NC_021151.1 2903393 2903989 D COG0582 Integrase; prophage integrase 2903393..2903989 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903889.1 CDS STU288_13990 NC_021151.1 2904370 2904762 R COG2801 Transposase and inactivated derivatives; putative transposase complement(2904370..2904762) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903890.1 CDS STU288_13995 NC_021151.1 2904984 2905250 R COG2801 Transposase and inactivated derivatives; transposase complement(2904984..2905250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903891.1 CDS STU288_14000 NC_021151.1 2905703 2906341 R putative cytoplasmic protein complement(2905703..2906341) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903892.1 CDS STU288_14005 NC_021151.1 2906338 2908320 R COG3972 Superfamily I DNA and RNA helicases; DNA/RNA helicase complement(2906338..2908320) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903893.1 CDS STU288_14010 NC_021151.1 2908599 2908898 D COG2963 Transposase and inactivated derivatives; Mobile element protein 2908599..2908898 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903894.1 CDS STU288_14015 NC_021151.1 2908895 2909761 D COG2801 Transposase and inactivated derivatives; transposase 2908895..2909761 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903895.1 CDS STU288_14020 NC_021151.1 2910287 2910463 R hypothetical protein complement(2910287..2910463) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903896.1 CDS STU288_14025 NC_021151.1 2910541 2911071 R phase-1 flagellin repressor complement(2910541..2911071) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903897.1 CDS STU288_14030 NC_021151.1 2911148 2912668 R COG1344 Flagellin and related hook-associated proteins; flagellin complement(2911148..2912668) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903898.1 CDS STU288_14035 NC_021151.1 2912760 2913332 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA-invertase 2912760..2913332 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903899.1 CDS STU288_14040 NC_021151.1 2914295 2915410 D COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; putative glycosyl transferase 2914295..2915410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903900.1 CDS STU288_14045 NC_021151.1 2915491 2919144 D COG1132 ABC-type multidrug transport system, ATPase and permease components; iron transporter: fur regulated 2915491..2919144 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903901.1 CDS STU288_14050 NC_021151.1 2919254 2920498 D COG2382 Enterochelin esterase and related enzymes; Enterochelin esterase-like protein (Fes) 2919254..2920498 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903902.1 CDS STU288_14055 NC_021151.1 2920530 2921465 D COG2819 Predicted hydrolase of the alpha/beta superfamily; Periplasmic esterase IroE 2920530..2921465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903903.1 CDS STU288_14060 NC_021151.1 2921507 2923681 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA complement(2921507..2923681) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903904.1 CDS STU288_14065 NC_021151.1 2924720 2925772 R COG1357 Uncharacterized low-complexity proteins; secreted effector protein PipB2 complement(2924720..2925772) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903905.1 CDS STU288_14070 NC_021151.1 2926291 2927220 D COG2990 Uncharacterized protein conserved in bacteria; virulence protein 2926291..2927220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903906.1 CDS STU288_14075 NC_021151.1 2927513 2928409 D antimicrobial resistance protein Mig-14 2927513..2928409 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903907.1 CDS STU288_14080 NC_021151.1 2928925 2929038 D hypothetical protein 2928925..2929038 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903908.1 CDS STU288_14085 NC_021151.1 2929131 2930144 R COG3376 High-affinity nickel permease; cation transporter complement(2929131..2930144) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903909.1 CDS STU288_14090 NC_021151.1 2930277 2931692 R COG0642 Signal transduction histidine kinase; tricarboxylic transport: regulatory protein complement(2930277..2931692) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903910.1 CDS STU288_14095 NC_021151.1 2931679 2932353 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein TctD complement(2931679..2932353) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903911.1 CDS STU288_14100 NC_021151.1 2932508 2933485 D COG3181 Uncharacterized protein conserved in bacteria; UPF0065 protein yflP Flags: Precursor 2932508..2933485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903912.1 CDS STU288_14105 NC_021151.1 2933500 2933931 D hypothetical protein 2933500..2933931 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903913.1 CDS STU288_14110 NC_021151.1 2933942 2935456 D COG3333 Uncharacterized protein conserved in bacteria; hypothetical protein 2933942..2935456 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903914.1 CDS STU288_14115 NC_021151.1 2935759 2936736 D carbon starvation induced protein 2935759..2936736 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903915.1 CDS STU288_14120 NC_021151.1 2936762 2938030 D COG0579 Predicted dehydrogenase; hydroxyglutarate oxidase 2936762..2938030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903916.1 CDS gabD NC_021151.1 2938052 2939500 D COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase I 2938052..2939500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903917.1 CDS STU288_14130 NC_021151.1 2939515 2940798 D COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate aminotransferase 2939515..2940798 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903918.1 CDS STU288_14135 NC_021151.1 2940928 2942328 D COG1113 Gamma-aminobutyrate permease and related permeases; gamma-aminobutyrate transporter 2940928..2942328 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903919.1 CDS STU288_14140 NC_021151.1 2942370 2943047 D COG1802 Transcriptional regulators; DNA-binding transcriptional regulator CsiR 2942370..2943047 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903920.1 CDS STU288_14145 NC_021151.1 2943069 2943518 R COG1652 Uncharacterized protein containing LysM domain; LysM domain/BON superfamily protein complement(2943069..2943518) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903921.1 CDS STU288_14150 NC_021151.1 2943618 2943776 R COG0401 Uncharacterized homolog of Blt101; hypothetical protein complement(2943618..2943776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903922.1 CDS STU288_14155 NC_021151.1 2943959 2944258 D COG0640 Predicted transcriptional regulators; regulatory protein ArsR 2943959..2944258 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903923.1 CDS STU288_14160 NC_021151.1 2944268 2944795 D COG0607 Rhodanese-related sulfurtransferase; Rhodanese-like sulfurtransferase 2944268..2944795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903924.1 CDS STU288_14165 NC_021151.1 2944874 2945053 D hypothetical protein 2944874..2945053 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903925.1 CDS STU288_14170 NC_021151.1 2945143 2945544 R COG2916 DNA-binding protein H-NS; DNA binding protein, nucleoid-associated complement(2945143..2945544) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903926.1 CDS STU288_14175 NC_021151.1 2946243 2946692 D hypothetical protein 2946243..2946692 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903927.1 CDS STU288_14180 NC_021151.1 2946727 2947077 R hypothetical protein complement(2946727..2947077) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903928.1 CDS STU288_14185 NC_021151.1 2947239 2947565 D COG4575 Uncharacterized conserved protein; hypothetical protein 2947239..2947565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903929.1 CDS STU288_14190 NC_021151.1 2947649 2948983 R COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; transcriptional regulator complement(2947649..2948983) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903930.1 CDS STU288_14195 NC_021151.1 2949072 2949503 D COG2128 Uncharacterized conserved protein; hypothetical protein 2949072..2949503 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903931.1 CDS STU288_14200 NC_021151.1 2949775 2950020 D COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein 2949775..2950020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903932.1 CDS nrdI NC_021151.1 2950017 2950427 D COG1780 Protein involved in ribonucleotide reduction; ribonucleotide reductase stimulatory protein 2950017..2950427 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903933.1 CDS STU288_14210 NC_021151.1 2950463 2952544 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 2950463..2952544 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903934.1 CDS nrdF NC_021151.1 2952555 2953514 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 2952555..2953514 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903935.1 CDS STU288_14220 NC_021151.1 2953869 2955071 D COG4175 ABC-type proline/glycine betaine transport system, ATPase component; glycine betaine transporter ATP-binding subunit 2953869..2955071 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903936.1 CDS STU288_14225 NC_021151.1 2955064 2956128 D COG4176 ABC-type proline/glycine betaine transport system, permease component; glycine betaine transporter membrane protein 2955064..2956128 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903937.1 CDS proX NC_021151.1 2956198 2957193 D COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; glycine betaine transporter periplasmic subunit 2956198..2957193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903938.1 CDS STU288_14235 NC_021151.1 2957358 2958542 D COG0477 Permeases of the major facilitator superfamily; putative transporter 2957358..2958542 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903939.1 CDS STU288_14240 NC_021151.1 2959039 2959569 D COG1846 Transcriptional regulators; transcriptional repressor MprA 2959039..2959569 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903940.1 CDS STU288_14245 NC_021151.1 2959696 2960868 D COG1566 Multidrug resistance efflux pump; multidrug efflux system protein EmrA 2959696..2960868 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903941.1 CDS emrB NC_021151.1 2960885 2962423 D COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein B 2960885..2962423 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903942.1 CDS STU288_14255 NC_021151.1 2962472 2963842 R glycoporin complement(2962472..2963842) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903943.1 CDS STU288_14260 NC_021151.1 2964188 2964703 R COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase complement(2964188..2964703) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903944.1 CDS STU288_14265 NC_021151.1 2964853 2966409 R COG2918 Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase complement(2964853..2966409) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903945.1 CDS STU288_14270 NC_021151.1 2966497 2966910 R COG1238 Predicted membrane protein; inner membrane protein YqaA complement(2966497..2966910) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903946.1 CDS STU288_14275 NC_021151.1 2966907 2967473 R COG0637 Predicted phosphatase/phosphohexomutase; fructose-1-P/6-phosphogluconate phosphatase complement(2966907..2967473) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903947.1 CDS STU288_14280 NC_021151.1 2967556 2967717 R Phosphatase YqaB complement(2967556..2967717) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903948.1 CDS STU288_14285 NC_021151.1 2968598 2968783 R COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator CsrA complement(2968598..2968783) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903949.1 CDS alaS NC_021151.1 2969018 2971648 R COG0013 Alanyl-tRNA synthetase; alanyl-tRNA ligase complement(2969018..2971648) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903950.1 CDS recX NC_021151.1 2971884 2972384 R COG2137 Uncharacterized protein conserved in bacteria; recombination regulator RecX complement(2971884..2972384) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903951.1 CDS recA NC_021151.1 2972501 2973562 R COG0468 RecA/RadA recombinase; recombinase A complement(2972501..2973562) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903952.1 CDS STU288_14305 NC_021151.1 2973647 2974144 R COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein complement(2973647..2974144) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903953.1 CDS STU288_14310 NC_021151.1 2974622 2975701 R COG2951 Membrane-bound lytic murein transglycosylase B; murein hydrolase B complement(2974622..2975701) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903954.1 CDS srlA NC_021151.1 2975955 2976518 D COG3730 Phosphotransferase system sorbitol-specific component IIC; PTS system glucitol/sorbitol-specific transporter subunit IIC 2975955..2976518 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903955.1 CDS srlE NC_021151.1 2976515 2977486 D COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 2976515..2977486 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903956.1 CDS STU288_14325 NC_021151.1 2977498 2977860 D COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 2977498..2977860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903957.1 CDS STU288_14330 NC_021151.1 2977872 2978651 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate dehydrogenase 2977872..2978651 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903958.1 CDS STU288_14335 NC_021151.1 2978727 2979086 D COG4578 Glucitol operon activator; DNA-binding transcriptional activator GutM 2978727..2979086 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903959.1 CDS srlR NC_021151.1 2979284 2980057 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor SrlR 2979284..2980057 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903960.1 CDS gutQ NC_021151.1 2980050 2981015 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 2980050..2981015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903961.1 CDS STU288_14350 NC_021151.1 2981012 2982532 R COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; anaerobic nitric oxide reductase transcription regulator complement(2981012..2982532) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903962.1 CDS STU288_14355 NC_021151.1 2982718 2984157 D COG0426 Uncharacterized flavoproteins; anaerobic nitric oxide reductase flavorubredoxin 2982718..2984157 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903963.1 CDS STU288_14360 NC_021151.1 2984154 2985287 D COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH:flavorubredoxin oxidoreductase 2984154..2985287 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903964.1 CDS STU288_14365 NC_021151.1 2985384 2987624 R COG0068 Hydrogenase maturation factor; carbamoyl phosphate phosphatase HypF complement(2985384..2987624) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903965.1 CDS STU288_14370 NC_021151.1 2987770 2988315 R COG1142 Fe-S-cluster-containing hydrogenase components 2; formate dehydrogenase-H ferredoxin subunit complement(2987770..2988315) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903966.1 CDS STU288_14375 NC_021151.1 2988516 2989325 R putative periplasmic or exported protein complement(2988516..2989325) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903967.1 CDS hycI NC_021151.1 2989352 2989822 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 3 maturation protease complement(2989352..2989822) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903968.1 CDS STU288_14385 NC_021151.1 2989815 2990225 R formate hydrogenlyase maturation protein HycH complement(2989815..2990225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903969.1 CDS STU288_14390 NC_021151.1 2990222 2990989 R COG3260 Ni,Fe-hydrogenase III small subunit; NAD(P)H-quinone oxidoreductase subunit K complement(2990222..2990989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903970.1 CDS STU288_14395 NC_021151.1 2990989 2991531 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); formate hydrogenlyase complex iron-sulfur subunit complement(2990989..2991531) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903971.1 CDS hycE NC_021151.1 2991541 2993250 R COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; hydrogenase 3 large subunit complement(2991541..2993250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903972.1 CDS hycD NC_021151.1 2993268 2994191 R COG0650 Formate hydrogenlyase subunit 4; hydrogenase 3 membrane subunit complement(2993268..2994191) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903973.1 CDS STU288_14410 NC_021151.1 2994194 2996020 R COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; formate hydrogenlyase subunit 3 complement(2994194..2996020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903974.1 CDS STU288_14415 NC_021151.1 2996020 2996628 R COG1142 Fe-S-cluster-containing hydrogenase components 2; Formate hydrogenlyase subunit 2 FHL subunit 2 complement(2996020..2996628) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903975.1 CDS STU288_14420 NC_021151.1 2996774 2997235 R formate hydrogenlyase regulatory protein HycA complement(2996774..2997235) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903976.1 CDS hypA NC_021151.1 2997445 2997801 D COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 2997445..2997801 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903977.1 CDS STU288_14430 NC_021151.1 2997870 2998742 D COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase nickel incorporation protein HypB 2997870..2998742 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903978.1 CDS STU288_14435 NC_021151.1 2998733 2999005 D COG0298 Hydrogenase maturation factor; hydrogenase assembly chaperone 2998733..2999005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903979.1 CDS STU288_14440 NC_021151.1 2999005 3000126 D COG0409 Hydrogenase maturation factor; hydrogenase isoenzymes formation protein HypD 2999005..3000126 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903980.1 CDS STU288_14445 NC_021151.1 3000123 3001133 D COG0309 Hydrogenase maturation factor; carbamoyl dehydratase HypE 3000123..3001133 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903981.1 CDS STU288_14450 NC_021151.1 3001352 3003430 D COG1132 ABC-type multidrug transport system, ATPase and permease components; formate hydrogenlyase transcriptional activator FhlA 3001352..3003430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903982.1 CDS STU288_14455 NC_021151.1 3003492 3003836 R hypothetical protein complement(3003492..3003836) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903983.1 CDS STU288_14460 NC_021151.1 3004018 3004935 D COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; periplasmic chelated iron-binding protein YfeA 3004018..3004935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903984.1 CDS STU288_14465 NC_021151.1 3004932 3005753 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; manganese/iron transporter ATP-binding protein 3004932..3005753 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903985.1 CDS STU288_14470 NC_021151.1 3005750 3006610 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Chelated iron transport system membrane protein yfeD 3005750..3006610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903986.1 CDS STU288_14475 NC_021151.1 3006601 3007449 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; iron transport protein, inner membrane component 3006601..3007449 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903987.1 CDS STU288_14480 NC_021151.1 3007548 3008414 R effector protein YopJ complement(3007548..3008414) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903988.1 CDS STU288_14485 NC_021151.1 3008617 3009372 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional activator SprB complement(3008617..3009372) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903989.1 CDS STU288_14490 NC_021151.1 3009757 3010644 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator SirC complement(3009757..3010644) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903990.1 CDS STU288_14495 NC_021151.1 3010989 3011441 R type III secretion system effector protein OrgC complement(3010989..3011441) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903991.1 CDS STU288_14500 NC_021151.1 3011438 3012118 R invasion protein OrgB complement(3011438..3012118) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903992.1 CDS STU288_14505 NC_021151.1 3012075 3012653 R invasion protein OrgA complement(3012075..3012653) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903993.1 CDS STU288_14510 NC_021151.1 3012646 3013404 R COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein PrgK complement(3012646..3013404) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903994.1 CDS STU288_14515 NC_021151.1 3013401 3013706 R type III secretion system needle complex protein PrgJ complement(3013401..3013706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903995.1 CDS STU288_14520 NC_021151.1 3013725 3013967 R COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; type III secretion system needle complex protein PrgI complement(3013725..3013967) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903996.1 CDS STU288_14525 NC_021151.1 3013992 3015170 R type III secretion system needle complex protein PrgH complement(3013992..3015170) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903997.1 CDS STU288_14530 NC_021151.1 3015486 3016415 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator HilD 3015486..3016415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903998.1 CDS STU288_14535 NC_021151.1 3017506 3019167 D COG3710 DNA-binding winged-HTH domains; invasion protein regulator 3017506..3019167 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007903999.1 CDS STU288_14540 NC_021151.1 3019185 3019667 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); invasion protein IagB 3019185..3019667 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904000.1 CDS STU288_14545 NC_021151.1 3019721 3021352 R COG2453 Predicted protein-tyrosine phosphatase; pathogenicity island 1 effector protein StpP complement(3019721..3021352) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904001.1 CDS STU288_14550 NC_021151.1 3021339 3021731 R chaperone protein SicP complement(3021339..3021731) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904002.1 CDS STU288_14555 NC_021151.1 3021758 3021982 R putative cytoplasmic protein complement(3021758..3021982) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904003.1 CDS STU288_14560 NC_021151.1 3022062 3022310 R COG0236 Acyl carrier protein; acyl carrier protein IacP complement(3022062..3022310) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904004.1 CDS STU288_14565 NC_021151.1 3022329 3024386 R pathogenicity island 1 effector protein SipA complement(3022329..3024386) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904005.1 CDS STU288_14570 NC_021151.1 3024405 3025436 R cell invasion protein SipD complement(3024405..3025436) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904006.1 CDS STU288_14575 NC_021151.1 3025507 3026736 R pathogenicity island 1 effector protein SipC complement(3025507..3026736) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904007.1 CDS STU288_14580 NC_021151.1 3026764 3028545 R pathogenicity island 1 effector protein SipB complement(3026764..3028545) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904008.1 CDS STU288_14585 NC_021151.1 3028548 3029045 R COG0457 FOG: TPR repeat; chaperone protein SicA complement(3028548..3029045) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904009.1 CDS STU288_14590 NC_021151.1 3029183 3030253 R COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS complement(3029183..3030253) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904010.1 CDS STU288_14595 NC_021151.1 3030240 3031031 R COG4791 Type III secretory pathway, component EscT; type III secretion system protein SpaR complement(3030240..3031031) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904011.1 CDS STU288_14600 NC_021151.1 3031035 3031295 R COG4794 Type III secretory pathway, component EscS; type III secretion system protein SpaQ complement(3031035..3031295) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904012.1 CDS spaP NC_021151.1 3031321 3031995 R COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP complement(3031321..3031995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904013.1 CDS STU288_14610 NC_021151.1 3031985 3032896 R COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SpaO complement(3031985..3032896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904014.1 CDS STU288_14615 NC_021151.1 3032896 3033906 R antigen presentation protein SpaN complement(3032896..3033906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904015.1 CDS STU288_14620 NC_021151.1 3033906 3034349 R type III secretion system protein SpaM complement(3033906..3034349) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904016.1 CDS STU288_14625 NC_021151.1 3034327 3035622 R COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; ATP synthase SpaL complement(3034327..3035622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904017.1 CDS STU288_14630 NC_021151.1 3035619 3036026 R type III secretion system chaperone SpaK complement(3035619..3036026) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904018.1 CDS STU288_14635 NC_021151.1 3036050 3038107 R COG4789 Type III secretory pathway, component EscV; type III secretion system protein InvA complement(3036050..3038107) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904019.1 CDS STU288_14640 NC_021151.1 3038132 3039250 R type III secretion system regulator InvE complement(3038132..3039250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904020.1 CDS STU288_14645 NC_021151.1 3039247 3040935 R COG1450 Type II secretory pathway, component PulD; type III secretion system outer membrane pore InvG complement(3039247..3040935) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904021.1 CDS STU288_14650 NC_021151.1 3040932 3041582 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator InvF complement(3040932..3041582) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904022.1 CDS STU288_14655 NC_021151.1 3042039 3042482 D invasion lipoprotein InvH 3042039..3042482 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904023.1 CDS STU288_14660 NC_021151.1 3042913 3043362 D putative cytoplasmic protein 3042913..3043362 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904024.1 CDS STU288_14665 NC_021151.1 3043347 3043694 D PrpA and PrpB, metallophosphatase domain protein 3043347..3043694 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904025.1 CDS STU288_14670 NC_021151.1 3043967 3044293 R putative cytoplasmic protein complement(3043967..3044293) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904026.1 CDS STU288_14675 NC_021151.1 3044991 3045272 D COG4453 Uncharacterized protein conserved in bacteria; ABC transporter permease 3044991..3045272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904027.1 CDS STU288_14680 NC_021151.1 3045269 3045796 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 3045269..3045796 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904028.1 CDS STU288_14685 NC_021151.1 3045869 3046009 R putative cytoplasmic protein complement(3045869..3046009) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904029.1 CDS STU288_14690 NC_021151.1 3046421 3047077 D COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine-specific protein phosphatase 2 3046421..3047077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904030.1 CDS STU288_14695 NC_021151.1 3047249 3047434 R putative cytoplasmic protein complement(3047249..3047434) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904031.1 CDS STU288_14700 NC_021151.1 3047929 3050496 D COG0249 Mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS 3047929..3050496 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904032.1 CDS STU288_14705 NC_021151.1 3050552 3050932 R COG4460 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3050552..3050932) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904033.1 CDS STU288_14710 NC_021151.1 3050929 3052137 R COG0477 Permeases of the major facilitator superfamily; Major Facilitator Superfamily protein complement(3050929..3052137) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904034.1 CDS STU288_14715 NC_021151.1 3052246 3053157 D COG0583 Transcriptional regulator; putative transcriptional regulator 3052246..3053157 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904035.1 CDS STU288_14720 NC_021151.1 3053199 3054695 R COG2610 H+/gluconate symporter and related permeases; putative permease complement(3053199..3054695) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904036.1 CDS STU288_14725 NC_021151.1 3054692 3055642 R COG0451 Nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(3054692..3055642) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904037.1 CDS STU288_14730 NC_021151.1 3055682 3056458 R COG3622 Hydroxypyruvate isomerase; hypothetical protein complement(3055682..3056458) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904038.1 CDS STU288_14735 NC_021151.1 3056463 3057101 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; aldolase complement(3056463..3057101) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904039.1 CDS STU288_14740 NC_021151.1 3057098 3058360 R COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3057098..3058360) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904040.1 CDS STU288_14745 NC_021151.1 3058354 3059277 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; D-beta-hydroxybutyrate dehydrogenase complement(3058354..3059277) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904041.1 CDS STU288_14750 NC_021151.1 3059474 3060238 D COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 3059474..3060238 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904042.1 CDS STU288_14755 NC_021151.1 3060257 3060661 R COG1846 Transcriptional regulators; transcriptional regulator complement(3060257..3060661) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904043.1 CDS STU288_14760 NC_021151.1 3060832 3061425 D COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 4-hydroxybenzoate decarboxylase subunit B 3060832..3061425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904044.1 CDS STU288_14765 NC_021151.1 3061425 3062852 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 3061425..3062852 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904045.1 CDS STU288_14770 NC_021151.1 3062863 3063099 D hypothetical protein 3062863..3063099 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904046.1 CDS STU288_14775 NC_021151.1 3063144 3064136 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoS complement(3063144..3064136) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904047.1 CDS nlpD NC_021151.1 3064199 3065332 R COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein NlpD complement(3064199..3065332) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904048.1 CDS pcm NC_021151.1 3065508 3066134 R COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase complement(3065508..3066134) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904049.1 CDS surE NC_021151.1 3066128 3066889 R COG0496 Predicted acid phosphatase; 5'(3')-nucleotidase/polyphosphatase complement(3066128..3066889) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904050.1 CDS truD NC_021151.1 3066870 3067919 R COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D complement(3066870..3067919) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904051.1 CDS ispF NC_021151.1 3067916 3068395 R COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3067916..3068395) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904052.1 CDS ispD NC_021151.1 3068395 3069105 R COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3068395..3069105) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904053.1 CDS ftsB NC_021151.1 3069124 3069435 R COG2919 Septum formation initiator; cell division protein FtsB complement(3069124..3069435) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904054.1 CDS STU288_14825 NC_021151.1 3070001 3070606 R COG0529 Adenylylsulfate kinase and related kinases; adenylylsulfate kinase complement(3070001..3070606) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904055.1 CDS cysN NC_021151.1 3070593 3072032 R COG2895 GTPases - Sulfate adenylate transferase subunit 1; sulfate adenylyltransferase subunit 1 complement(3070593..3072032) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904056.1 CDS STU288_14835 NC_021151.1 3072042 3072950 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; sulfate adenylyltransferase subunit 2 complement(3072042..3072950) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904057.1 CDS STU288_14840 NC_021151.1 3073201 3074247 D COG2234 Predicted aminopeptidases; alkaline phosphatase isozyme conversion aminopeptidase 3073201..3074247 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904058.1 CDS STU288_14845 NC_021151.1 3075834 3076127 R ssRNA endonuclease complement(3075834..3076127) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904059.1 CDS STU288_14850 NC_021151.1 3076127 3077047 R COG1518 Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein Cas1 complement(3076127..3077047) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904060.1 CDS STU288_14855 NC_021151.1 3077044 3077694 R CRISPR-associated protein, Cse3 family complement(3077044..3077694) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904061.1 CDS STU288_14860 NC_021151.1 3077676 3078422 R hypothetical protein complement(3077676..3078422) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904062.1 CDS STU288_14865 NC_021151.1 3078433 3079491 R hypothetical protein complement(3078433..3079491) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904063.1 CDS STU288_14870 NC_021151.1 3079505 3080065 R Cse2 family CRISPR-associated protein complement(3079505..3080065) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904064.1 CDS STU288_14875 NC_021151.1 3080062 3081618 R hypothetical protein complement(3080062..3081618) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904065.1 CDS STU288_14880 NC_021151.1 3081630 3084293 R COG1203 Predicted helicases; putative helicase complement(3081630..3084293) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904066.1 CDS STU288_14885 NC_021151.1 3084738 3085691 D pathogenicity island 1 effector protein SopD 3084738..3085691 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904067.1 CDS STU288_14890 NC_021151.1 3085779 3086513 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase complement(3085779..3086513) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904068.1 CDS STU288_14895 NC_021151.1 3086589 3088301 R COG0155 Sulfite reductase, beta subunit (hemoprotein); sulfite reductase subunit beta complement(3086589..3088301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904069.1 CDS cysJ NC_021151.1 3088301 3090100 R COG0369 Sulfite reductase, alpha subunit (flavoprotein); sulfite reductase subunit alpha complement(3088301..3090100) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904070.1 CDS STU288_14905 NC_021151.1 3090524 3090886 D COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 3090524..3090886 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904071.1 CDS STU288_14910 NC_021151.1 3090974 3091771 R COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II; putative metal-dependent hydrolase complement(3090974..3091771) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904072.1 CDS STU288_14915 NC_021151.1 3093065 3093196 D hypothetical protein 3093065..3093196 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904073.1 CDS STU288_14920 NC_021151.1 3093183 3093368 D hypothetical protein 3093183..3093368 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904074.1 CDS STU288_14925 NC_021151.1 3094147 3094818 R COG0602 Organic radical activating enzymes; putative molybdenum cofactor biosynthesis protein A complement(3094147..3094818) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904075.1 CDS eno NC_021151.1 3094954 3096252 R COG0148 Enolase; enolase complement(3094954..3096252) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904076.1 CDS pyrG NC_021151.1 3096335 3097972 R COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase complement(3096335..3097972) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904077.1 CDS mazG NC_021151.1 3098200 3099000 R COG1694 Predicted pyrophosphatase; nucleoside triphosphate pyrophosphohydrolase complement(3098200..3099000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904078.1 CDS STU288_14945 NC_021151.1 3099606 3099758 D fimbrial protein SteA 3099606..3099758 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904079.1 CDS STU288_14950 NC_021151.1 3099768 3100064 R COG3668 Plasmid stabilization system protein; plasmid stabilization system protein, RelE/ParE family complement(3099768..3100064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904080.1 CDS STU288_14955 NC_021151.1 3100030 3100317 R COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein complement(3100030..3100317) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904081.1 CDS relA NC_021151.1 3100470 3102704 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; (p)ppGpp synthetase I/GTP pyrophosphokinase complement(3100470..3102704) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904082.1 CDS rumA NC_021151.1 3102756 3104051 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA m(5)U1939 methyltransferase complement(3102756..3104051) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904083.1 CDS STU288_14970 NC_021151.1 3104109 3106865 D COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase BarA 3104109..3106865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904084.1 CDS STU288_14975 NC_021151.1 3106909 3108051 R COG1929 Glycerate kinase; putative glycerate kinase 2 complement(3106909..3108051) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904085.1 CDS gudD NC_021151.1 3108129 3109469 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase complement(3108129..3109469) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904086.1 CDS gudD NC_021151.1 3109490 3110830 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase complement(3109490..3110830) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904087.1 CDS STU288_14990 NC_021151.1 3110827 3112185 R COG0477 Permeases of the major facilitator superfamily; putative glucarate transporter D-glucarate permease complement(3110827..3112185) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904088.1 CDS STU288_14995 NC_021151.1 3112666 3113115 R COG0716 Flavodoxins; flavodoxin complement(3112666..3113115) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904089.1 CDS STU288_15000 NC_021151.1 3113134 3113916 R COG0564 Pseudouridylate synthases, 23S RNA-specific; tRNA pseudouridine synthase C complement(3113134..3113916) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904090.1 CDS STU288_15005 NC_021151.1 3113916 3114245 R COG3098 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3113916..3114245) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904091.1 CDS STU288_15010 NC_021151.1 3114857 3115402 R SecY interacting protein Syd complement(3114857..3115402) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904092.1 CDS queF NC_021151.1 3115471 3116319 D COG2904 Uncharacterized protein conserved in bacteria; 7-cyano-7-deazaguanine reductase 3115471..3116319 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904093.1 CDS STU288_15020 NC_021151.1 3116432 3117796 D COG1611 Predicted Rossmann fold nucleotide-binding protein; UPF0717 protein ygdH 3116432..3117796 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904094.1 CDS STU288_15025 NC_021151.1 3118361 3119650 D COG0814 Amino acid permeases; serine transporter 3118361..3119650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904095.1 CDS STU288_15030 NC_021151.1 3119709 3121076 D COG1760 L-serine deaminase; L-serine deaminase II 3119709..3121076 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904096.1 CDS STU288_15035 NC_021151.1 3121247 3122002 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); flap endonuclease-like protein 3121247..3122002 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904097.1 CDS STU288_15040 NC_021151.1 3122094 3123242 R COG1454 Alcohol dehydrogenase, class IV; L-1,2-propanediol oxidoreductase complement(3122094..3123242) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904098.1 CDS STU288_15045 NC_021151.1 3123259 3123906 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase complement(3123259..3123906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904099.1 CDS STU288_15050 NC_021151.1 3124461 3125777 D COG0738 Fucose permease; L-fucose transporter 3124461..3125777 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904100.1 CDS fucI NC_021151.1 3125809 3127584 D COG2407 L-fucose isomerase and related proteins; L-fucose isomerase 3125809..3127584 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904101.1 CDS STU288_15060 NC_021151.1 3127685 3129103 D COG1070 Sugar (pentulose and hexulose) kinases; L-fuculokinase 3127685..3129103 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904102.1 CDS fucU NC_021151.1 3129105 3129527 D COG4154 Fucose dissimilation pathway protein FucU; L-fucose mutarotase 3129105..3129527 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904103.1 CDS STU288_15070 NC_021151.1 3129585 3130295 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional activator FucR 3129585..3130295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904104.1 CDS STU288_15075 NC_021151.1 3130354 3131454 R COG2933 Predicted SAM-dependent methyltransferase; 23S rRNA C2498 ribose 2'-O-ribose methyltransferase complement(3130354..3131454) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904105.1 CDS STU288_15080 NC_021151.1 3131447 3131842 R COG2363 Uncharacterized small membrane protein; hypothetical protein complement(3131447..3131842) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904106.1 CDS STU288_15085 NC_021151.1 3131861 3132778 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator GcvA complement(3131861..3132778) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904107.1 CDS STU288_15090 NC_021151.1 3133125 3133352 R putative lipoprotein ygdI Flags: Precursor complement(3133125..3133352) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904108.1 CDS STU288_15095 NC_021151.1 3133545 3134750 D COG0520 Selenocysteine lyase; cysteine sulfinate desulfinase 3133545..3134750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904109.1 CDS STU288_15100 NC_021151.1 3134750 3135193 D COG2166 SufE protein probably involved in Fe-S center assembly; CsdA-binding activator 3134750..3135193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904110.1 CDS STU288_15105 NC_021151.1 3135466 3136380 D COG2962 Predicted permeases; hypothetical protein 3135466..3136380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904111.1 CDS STU288_15110 NC_021151.1 3136432 3137238 R COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; sulfur acceptor protein CsdL complement(3136432..3137238) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904112.1 CDS mltA NC_021151.1 3137348 3138445 R COG2821 Membrane-bound lytic murein transglycosylase; murein transglycosylase A complement(3137348..3138445) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904113.1 CDS amiC NC_021151.1 3138945 3140198 R COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3138945..3140198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904114.1 CDS STU288_15125 NC_021151.1 3140431 3141762 D COG0548 Acetylglutamate kinase; N-acetylglutamate synthase 3140431..3141762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904115.1 CDS recD NC_021151.1 3141865 3143700 R COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exonuclease V subunit alpha complement(3141865..3143700) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904116.1 CDS recB NC_021151.1 3143697 3147242 R COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); exonuclease V subunit beta complement(3143697..3147242) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904117.1 CDS STU288_15140 NC_021151.1 3147235 3150123 R COG0612 Predicted Zn-dependent peptidases; protease complement(3147235..3150123) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904118.1 CDS recC NC_021151.1 3150301 3153672 R COG1330 Exonuclease V gamma subunit; exonuclease V subunit gamma complement(3150301..3153672) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904119.1 CDS STU288_15150 NC_021151.1 3153688 3154008 R hypothetical protein complement(3153688..3154008) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904120.1 CDS STU288_15155 NC_021151.1 3153993 3154400 R hypothetical protein complement(3153993..3154400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904121.1 CDS STU288_15160 NC_021151.1 3154397 3154960 R hypothetical protein complement(3154397..3154960) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904122.1 CDS STU288_15165 NC_021151.1 3154951 3155421 R hypothetical protein complement(3154951..3155421) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904123.1 CDS thyA NC_021151.1 3155606 3156400 R COG0207 Thymidylate synthase; thymidylate synthase complement(3155606..3156400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904124.1 CDS STU288_15175 NC_021151.1 3156407 3157282 R COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(3156407..3157282) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904125.1 CDS STU288_15180 NC_021151.1 3157498 3159744 R COG3605 Signal transduction protein containing GAF and PtsI domains; phosphoenolpyruvate-protein phosphotransferase complement(3157498..3159744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904126.1 CDS STU288_15185 NC_021151.1 3159757 3160287 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; RNA pyrophosphohydrolase complement(3159757..3160287) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904127.1 CDS STU288_15190 NC_021151.1 3160970 3161665 D COG3066 DNA mismatch repair protein; DNA mismatch repair protein 3160970..3161665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904128.1 CDS STU288_15195 NC_021151.1 3161847 3162560 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 3161847..3162560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904129.1 CDS STU288_15200 NC_021151.1 3162730 3162948 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative lipoprotein ygdR Flags: Precursor 3162730..3162948 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904130.1 CDS tas NC_021151.1 3163139 3164179 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo-keto reductase 3163139..3164179 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904131.1 CDS STU288_15210 NC_021151.1 3164266 3165468 R COG0477 Permeases of the major facilitator superfamily; lysophospholipid transporter LplT complement(3164266..3165468) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904132.1 CDS STU288_15215 NC_021151.1 3165461 3167620 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3165461..3167620) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904133.1 CDS STU288_15220 NC_021151.1 3168213 3169241 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalR 3168213..3169241 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904134.1 CDS STU288_15225 NC_021151.1 3169255 3170274 D COG1609 Transcriptional regulators; putative transcriptional regulator 3169255..3170274 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904135.1 CDS STU288_15230 NC_021151.1 3170284 3171546 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(3170284..3171546) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904136.1 CDS STU288_15235 NC_021151.1 3171664 3172599 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator LysR 3171664..3172599 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904137.1 CDS STU288_15240 NC_021151.1 3172571 3173278 R COG1794 Aspartate racemase; racemase complement(3172571..3173278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904138.1 CDS STU288_15245 NC_021151.1 3173391 3174809 R COG0477 Permeases of the major facilitator superfamily; Galactose-proton symporter Galactose transporter complement(3173391..3174809) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904139.1 CDS STU288_15250 NC_021151.1 3175163 3175924 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase complement(3175163..3175924) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904140.1 CDS STU288_15255 NC_021151.1 3175981 3176817 R COG3717 5-keto 4-deoxyuronate isomerase; 5-keto-4-deoxyuronate isomerase complement(3175981..3176817) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904141.1 CDS STU288_15260 NC_021151.1 3177247 3178425 R COG0183 Acetyl-CoA acetyltransferase; acyltransferase complement(3177247..3178425) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904142.1 CDS STU288_15265 NC_021151.1 3178548 3179411 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(3178548..3179411) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904143.1 CDS STU288_15270 NC_021151.1 3179515 3179970 D COG4125 Predicted membrane protein; putative inner membrane protein 3179515..3179970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904144.1 CDS STU288_15275 NC_021151.1 3180112 3181341 D COG0814 Amino acid permeases; amino acid transport protein 3180112..3181341 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904145.1 CDS STU288_15280 NC_021151.1 3181372 3181644 R COG1937 Uncharacterized protein conserved in bacteria; transcriptional repressor RcnR to maintain nickel and cobalt homeostasis complement(3181372..3181644) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904146.1 CDS STU288_15285 NC_021151.1 3181766 3182662 D COG2215 ABC-type uncharacterized transport system, permease component; nickel/cobalt efflux protein RcnA 3181766..3182662 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904147.1 CDS STU288_15290 NC_021151.1 3182872 3183630 R putative cytoplasmic protein complement(3182872..3183630) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904148.1 CDS STU288_15295 NC_021151.1 3183617 3184129 R hypothetical protein complement(3183617..3184129) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904149.1 CDS STU288_15300 NC_021151.1 3184273 3185349 R putative outer membrane protein complement(3184273..3185349) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904150.1 CDS STU288_15305 NC_021151.1 3185346 3186089 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StdC complement(3185346..3186089) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904151.1 CDS STU288_15310 NC_021151.1 3186130 3188619 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StdB complement(3186130..3188619) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904152.1 CDS STU288_15315 NC_021151.1 3188739 3189323 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein StdA complement(3188739..3189323) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904153.1 CDS STU288_15320 NC_021151.1 3190042 3190674 R hypothetical protein complement(3190042..3190674) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904154.1 CDS STU288_15325 NC_021151.1 3190721 3191257 R Ail/OmpX-like protein complement(3190721..3191257) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904155.1 CDS STU288_15330 NC_021151.1 3191937 3192395 R COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 complement(3191937..3192395) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904156.1 CDS STU288_15335 NC_021151.1 3192775 3193173 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein complement(3192775..3193173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904157.1 CDS STU288_15340 NC_021151.1 3193173 3193400 R COG4456 Virulence-associated protein and related proteins; putative virulence-associated protein complement(3193173..3193400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904158.1 CDS STU288_15345 NC_021151.1 3193577 3193828 D endonuclease 3193577..3193828 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904159.1 CDS STU288_15350 NC_021151.1 3193825 3193920 D hypothetical protein 3193825..3193920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904160.1 CDS STU288_15355 NC_021151.1 3193974 3194090 D hypothetical protein 3193974..3194090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904161.1 CDS STU288_15360 NC_021151.1 3194109 3194909 D putative inner membrane protein 3194109..3194909 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904162.1 CDS STU288_15365 NC_021151.1 3195194 3195946 R COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein complement(3195194..3195946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904163.1 CDS STU288_15370 NC_021151.1 3196217 3196762 D COG1443 Isopentenyldiphosphate isomerase; isopentenyl-diphosphate delta-isomerase 3196217..3196762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904164.1 CDS lysS NC_021151.1 3196838 3198355 R COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA ligase complement(3196838..3198355) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904165.1 CDS STU288_15390 NC_021151.1 3199568 3201301 R COG0608 Single-stranded DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3199568..3201301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904166.1 CDS STU288_15395 NC_021151.1 3201307 3202020 R COG1651 Protein-disulfide isomerase; protein disulfide isomerase II DsbC complement(3201307..3202020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904167.1 CDS xerD NC_021151.1 3202044 3202940 R COG4974 Site-specific recombinase XerD; site-specific tyrosine recombinase XerD complement(3202044..3202940) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904168.1 CDS STU288_15405 NC_021151.1 3203053 3203574 D COG0716 Flavodoxins; flavodoxin FldB 3203053..3203574 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904169.1 CDS STU288_15410 NC_021151.1 3203627 3204040 R hypothetical protein complement(3203627..3204040) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904170.1 CDS STU288_15415 NC_021151.1 3204021 3204287 R COG2938 Uncharacterized conserved protein; hypothetical protein complement(3204021..3204287) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904171.1 CDS STU288_15420 NC_021151.1 3204286 3204522 D COG0456 Acetyltransferases; hypothetical protein 3204286..3204522 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904172.1 CDS STU288_15425 NC_021151.1 3204537 3205517 D COG0354 Predicted aminomethyltransferase related to GcvT; global regulator 3204537..3205517 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904173.1 CDS STU288_15430 NC_021151.1 3205633 3206292 R COG1272 Predicted membrane protein, hemolysin III homolog; hemolysin complement(3205633..3206292) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904174.1 CDS STU288_15435 NC_021151.1 3206456 3206767 R COG3097 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3206456..3206767) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904175.1 CDS STU288_15440 NC_021151.1 3206926 3208359 D COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase BglA 3206926..3208359 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904176.1 CDS STU288_15445 NC_021151.1 3208407 3209300 R putative outer membrane protein complement(3208407..3209300) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904177.1 CDS STU288_15450 NC_021151.1 3209756 3212629 R COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase complement(3209756..3212629) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904178.1 CDS STU288_15455 NC_021151.1 3212792 3213181 R COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system protein H complement(3212792..3213181) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904179.1 CDS gcvT NC_021151.1 3213207 3214301 R COG0404 Glycine cleavage system T protein (aminomethyltransferase); glycine cleavage system aminomethyltransferase T complement(3213207..3214301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904180.1 CDS STU288_15465 NC_021151.1 3214756 3215958 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; oxidoreductase complement(3214756..3215958) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904181.1 CDS STU288_15470 NC_021151.1 3216084 3217262 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3216084..3217262) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904182.1 CDS STU288_15475 NC_021151.1 3217259 3218575 R COG0006 Xaa-Pro aminopeptidase; proline aminopeptidase P II complement(3217259..3218575) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904183.1 CDS STU288_15480 NC_021151.1 3218601 3219179 R COG3079 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3218601..3219179) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904184.1 CDS STU288_15485 NC_021151.1 3219346 3219675 D COG3027 Uncharacterized protein conserved in bacteria; Z-ring-associated protein 3219346..3219675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904185.1 CDS STU288_15490 NC_021151.1 3219969 3220517 D COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase family protein 3219969..3220517 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904186.1 CDS STU288_15495 NC_021151.1 3220898 3222130 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase complement(3220898..3222130) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904187.1 CDS STU288_15500 NC_021151.1 3222396 3223055 R COG0120 Ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A complement(3222396..3223055) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904188.1 CDS STU288_15505 NC_021151.1 3223209 3224102 D COG0583 Transcriptional regulator; chromosome replication initiation inhibitor protein 3223209..3224102 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904189.1 CDS STU288_15510 NC_021151.1 3224368 3225114 R COG2968 Uncharacterized conserved protein; oxidative stress defense protein complement(3224368..3225114) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904190.1 CDS STU288_15515 NC_021151.1 3225208 3225843 R COG1279 Lysine efflux permease; arginine exporter protein complement(3225208..3225843) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904191.1 CDS STU288_15520 NC_021151.1 3226043 3226903 R COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS complement(3226043..3226903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904192.1 CDS STU288_15525 NC_021151.1 3227130 3228209 R COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase complement(3227130..3228209) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904193.1 CDS pgk NC_021151.1 3228311 3229474 R COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase complement(3228311..3229474) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904194.1 CDS STU288_15535 NC_021151.1 3229496 3230542 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; erythrose 4-phosphate dehydrogenase complement(3229496..3230542) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904195.1 CDS STU288_15540 NC_021151.1 3230916 3231341 D COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif; hypothetical protein 3230916..3231341 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904196.1 CDS STU288_15545 NC_021151.1 3231367 3231945 D putative inner membrane protein 3231367..3231945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904197.1 CDS STU288_15550 NC_021151.1 3231946 3232653 D COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; hypothetical protein 3231946..3232653 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904198.1 CDS STU288_15555 NC_021151.1 3232641 3233318 D COG1122 ABC-type cobalt transport system, ATPase component; hypothetical protein 3232641..3233318 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904199.1 CDS STU288_15560 NC_021151.1 3233312 3233968 D COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; putative ABC-type cobalt transport system, ATPase component 3233312..3233968 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904200.1 CDS STU288_15565 NC_021151.1 3234012 3236003 R COG0021 Transketolase; transketolase complement(3234012..3236003) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904201.1 CDS STU288_15570 NC_021151.1 3236279 3237037 D COG0501 Zn-dependent protease with chaperone function; putative metalloprotease 3236279..3237037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904202.1 CDS STU288_15575 NC_021151.1 3237138 3238058 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; agmatinase complement(3237138..3238058) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904203.1 CDS STU288_15580 NC_021151.1 3238263 3239153 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative hydrolase or acyltransferase complement(3238263..3239153) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904204.1 CDS STU288_15585 NC_021151.1 3239433 3239906 R COG2731 Beta-galactosidase, beta subunit; hypothetical protein complement(3239433..3239906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904205.1 CDS STU288_15590 NC_021151.1 3239945 3240952 R COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase complement(3239945..3240952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904206.1 CDS STU288_15595 NC_021151.1 3240966 3241982 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc binding dehydrogenase complement(3240966..3241982) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904207.1 CDS STU288_15600 NC_021151.1 3241985 3243457 R COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative mannitol dehydrogenase complement(3241985..3243457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904208.1 CDS STU288_15605 NC_021151.1 3244298 3244411 D putative racemase 3244298..3244411 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904209.1 CDS STU288_15610 NC_021151.1 3244558 3244647 D mandelate racemase/muconate lactonizing protein 3244558..3244647 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904210.1 CDS STU288_15615 NC_021151.1 3244726 3245475 R COG2186 Transcriptional regulators; GntR family transcriptional regulator complement(3244726..3245475) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904211.1 CDS STU288_15620 NC_021151.1 3245680 3246411 R outer membrane lipoprotein complement(3245680..3246411) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904212.1 CDS STU288_15625 NC_021151.1 3246555 3248531 R COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase complement(3246555..3248531) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904213.1 CDS STU288_15630 NC_021151.1 3248540 3248671 R hypothetical protein complement(3248540..3248671) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904214.1 CDS STU288_15635 NC_021151.1 3248966 3249265 R putative inner membrane protein complement(3248966..3249265) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904215.1 CDS STU288_15640 NC_021151.1 3249321 3250475 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3249321..3250475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904216.1 CDS STU288_15645 NC_021151.1 3250968 3252362 D COG0477 Permeases of the major facilitator superfamily; D-galactose transporter GalP 3250968..3252362 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904217.1 CDS STU288_15650 NC_021151.1 3252441 3252938 D COG3091 Uncharacterized protein conserved in bacteria; hypothetical protein 3252441..3252938 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904218.1 CDS STU288_15655 NC_021151.1 3253033 3253740 D COG2356 Endonuclease I; DNA-specific endonuclease I 3253033..3253740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904219.1 CDS STU288_15660 NC_021151.1 3253817 3254548 D COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 3253817..3254548 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904220.1 CDS STU288_15665 NC_021151.1 3254568 3255515 D COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); glutathione synthetase 3254568..3255515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904221.1 CDS STU288_15670 NC_021151.1 3255731 3256294 D COG1678 Putative transcriptional regulator; hypothetical protein 3255731..3256294 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904222.1 CDS STU288_15675 NC_021151.1 3256294 3256710 D COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 3256294..3256710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904223.1 CDS STU288_15680 NC_021151.1 3256757 3257443 R COG1414 Transcriptional regulator; global regulatory protein complement(3256757..3257443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904224.1 CDS STU288_15685 NC_021151.1 3257575 3258555 R COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; type II secretion, ATP-binding, protein complement(3257575..3258555) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904225.1 CDS STU288_15690 NC_021151.1 3258573 3259277 D COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 3258573..3259277 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904226.1 CDS STU288_15695 NC_021151.1 3259296 3259862 D COG0762 Predicted integral membrane protein; resistance protein 3259296..3259862 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904227.1 CDS STU288_15700 NC_021151.1 3259859 3260149 D COG1872 Uncharacterized conserved protein; hypothetical protein 3259859..3260149 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904228.1 CDS STU288_15705 NC_021151.1 3260157 3260750 D COG0127 Xanthosine triphosphate pyrophosphatase; dITP/XTP pyrophosphatase 3260157..3260750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904229.1 CDS STU288_15710 NC_021151.1 3260743 3261879 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; HemN family oxidoreductase 3260743..3261879 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904230.1 CDS STU288_15715 NC_021151.1 3261970 3262977 R hypothetical protein complement(3261970..3262977) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904231.1 CDS ansB NC_021151.1 3263110 3264156 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II complement(3263110..3264156) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904232.1 CDS STU288_15725 NC_021151.1 3264345 3265064 R hypothetical protein complement(3264345..3265064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904233.1 CDS STU288_15730 NC_021151.1 3265114 3265440 R COG3171 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3265114..3265440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904234.1 CDS trmB NC_021151.1 3265440 3266159 R COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(3265440..3266159) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904235.1 CDS STU288_15740 NC_021151.1 3266314 3267366 D COG1194 A/G-specific DNA glycosylase; adenine DNA glycosylase 3266314..3267366 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904236.1 CDS STU288_15745 NC_021151.1 3267394 3267669 D COG2924 Fe-S cluster protector protein; oxidative damage protection protein 3267394..3267669 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904237.1 CDS mltC NC_021151.1 3267785 3268867 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); murein transglycosylase C 3267785..3268867 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904238.1 CDS STU288_15755 NC_021151.1 3269084 3270340 D COG0477 Permeases of the major facilitator superfamily; nucleoside permease NupG 3269084..3270340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904239.1 CDS STU288_15760 NC_021151.1 3270402 3272537 R COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase complement(3270402..3272537) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904240.1 CDS STU288_15765 NC_021151.1 3272810 3272923 D hypothetical protein 3272810..3272923 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904241.1 CDS STU288_15770 NC_021151.1 3272962 3273669 D COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 3272962..3273669 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904242.1 CDS STU288_15775 NC_021151.1 3274009 3274389 R COG0346 Lactoylglutathione lyase and related lyases; putative lactoylglutathione lyase complement(3274009..3274389) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904243.1 CDS STU288_15780 NC_021151.1 3274454 3275776 R COG0427 Acetyl-CoA hydrolase; 4-hydroxybutyrate CoA-transferase complement(3274454..3275776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904244.1 CDS STU288_15785 NC_021151.1 3275804 3276331 R COG2030 Acyl dehydratase; Protein maoC Phenylacetic acid degradation protein paaZ complement(3275804..3276331) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904245.1 CDS STU288_15790 NC_021151.1 3276355 3277197 R COG2301 Citrate lyase beta subunit; putative citrate lyase beta chain complement(3276355..3277197) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904246.1 CDS STU288_15795 NC_021151.1 3277289 3278167 D COG0583 Transcriptional regulator; StmR 3277289..3278167 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904247.1 CDS STU288_15800 NC_021151.1 3278215 3279954 R COG3119 Arylsulfatase A and related enzymes; arylsulfatase complement(3278215..3279954) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904248.1 CDS STU288_15805 NC_021151.1 3280023 3281207 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); Putative arylsulfatase regulator complement(3280023..3281207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904249.1 CDS STU288_15810 NC_021151.1 3281719 3282402 D COG2771 DNA-binding HTH domain-containing proteins; Monoamine regulon transcriptional regulator 3281719..3282402 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904250.1 CDS STU288_15815 NC_021151.1 3282506 3283063 R hypothetical protein complement(3282506..3283063) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904251.1 CDS STU288_15820 NC_021151.1 3283041 3284540 R COG0531 Amino acid transporters; Y+L amino acid transporter 2 y(+)L-type amino acid transporter 2 complement(3283041..3284540) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904252.1 CDS STU288_15825 NC_021151.1 3284533 3284676 R COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein complement(3284533..3284676) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904253.1 CDS STU288_15830 NC_021151.1 3284749 3285123 R COG3450 Predicted enzyme of the cupin superfamily; hypothetical protein complement(3284749..3285123) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904254.1 CDS STU288_15835 NC_021151.1 3285138 3286439 R COG0665 Glycine/D-amino acid oxidases (deaminating); FAD dependent oxidoreductase complement(3285138..3286439) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904255.1 CDS STU288_15840 NC_021151.1 3286601 3288085 D COG1012 NAD-dependent aldehyde dehydrogenases; Aldehyde dehydrogenase 3286601..3288085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904256.1 CDS iraD NC_021151.1 3288221 3288430 R DNA replication/recombination/repair protein complement(3288221..3288430) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904257.1 CDS STU288_15850 NC_021151.1 3288601 3289086 R COG3157 Hemolysin-coregulated protein (uncharacterized); hypothetical protein complement(3288601..3289086) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904258.1 CDS STU288_15855 NC_021151.1 3289085 3289240 D hypothetical protein 3289085..3289240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904259.1 CDS STU288_15860 NC_021151.1 3289812 3290735 R COG0726 Predicted xylanase/chitin deacetylase; putative xylanase/chitin deacetylase complement(3289812..3290735) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904260.1 CDS STU288_15865 NC_021151.1 3290774 3291652 R COG0388 Predicted amidohydrolase; hydrolase complement(3290774..3291652) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904261.1 CDS STU288_15870 NC_021151.1 3292048 3293352 R COG0477 Permeases of the major facilitator superfamily; hexuronate transporter ExuT complement(3292048..3293352) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904262.1 CDS STU288_15875 NC_021151.1 3293757 3294941 D COG1312 D-mannonate dehydratase; mannonate dehydratase 3293757..3294941 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904263.1 CDS STU288_15880 NC_021151.1 3295052 3296524 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 3295052..3296524 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904264.1 CDS STU288_15885 NC_021151.1 3296536 3297948 D COG1904 Glucuronate isomerase; glucuronate isomerase 3296536..3297948 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904265.1 CDS STU288_15890 NC_021151.1 3298248 3299306 R COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein complement(3298248..3299306) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904266.1 CDS STU288_15895 NC_021151.1 3299976 3301832 R COG0754 Glutathionylspermidine synthase; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3299976..3301832) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904267.1 CDS STU288_15900 NC_021151.1 3302059 3302925 D COG0625 Glutathione S-transferase; S-transferase 3302059..3302925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904268.1 CDS STU288_15905 NC_021151.1 3302993 3303703 R COG0725 ABC-type molybdate transport system, periplasmic component; molybdate ABC transporter periplasmic molybdate-binding protein complement(3302993..3303703) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904269.1 CDS STU288_15910 NC_021151.1 3303703 3304755 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; Ferrichrome-binding periplasmic protein complement(3303703..3304755) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904270.1 CDS STU288_15915 NC_021151.1 3304831 3305079 R COG0298 Hydrogenase maturation factor; hydrogenase 2 accessory protein HypG complement(3304831..3305079) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904271.1 CDS STU288_15920 NC_021151.1 3305107 3305448 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HybF complement(3305107..3305448) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904272.1 CDS STU288_15925 NC_021151.1 3305441 3305929 R hydrogenase 2-specific chaperone complement(3305441..3305929) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904273.1 CDS hybD NC_021151.1 3305922 3306416 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 2 maturation endopeptidase complement(3305922..3306416) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904274.1 CDS STU288_15935 NC_021151.1 3306416 3308119 R COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 2 large subunit complement(3306416..3308119) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904275.1 CDS STU288_15940 NC_021151.1 3308116 3309294 R COG5557 Polysulphide reductase; hydrogenase 2 b cytochrome subunit complement(3308116..3309294) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904276.1 CDS STU288_15945 NC_021151.1 3309284 3310270 R COG0437 Fe-S-cluster-containing hydrogenase components 1; hydrogenase 2 protein HybA complement(3309284..3310270) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904277.1 CDS STU288_15950 NC_021151.1 3310273 3311391 R COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 2 small subunit complement(3310273..3311391) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904278.1 CDS STU288_15955 NC_021151.1 3311581 3311868 R hypothetical protein complement(3311581..3311868) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904279.1 CDS STU288_15960 NC_021151.1 3311953 3313596 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3311953..3313596) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904280.1 CDS STU288_15965 NC_021151.1 3313903 3314397 R COG2862 Predicted membrane protein; hypothetical protein complement(3313903..3314397) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904281.1 CDS STU288_15970 NC_021151.1 3314677 3315180 R hypothetical protein complement(3314677..3315180) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904282.1 CDS STU288_15975 NC_021151.1 3315284 3315694 D hypothetical protein 3315284..3315694 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904283.1 CDS STU288_15980 NC_021151.1 3315681 3316085 D hypothetical protein 3315681..3316085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904284.1 CDS STU288_15985 NC_021151.1 3316209 3317093 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 3316209..3317093 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904285.1 CDS STU288_15990 NC_021151.1 3317206 3317631 R COG0848 Biopolymer transport protein; biopolymer transport protein ExbD complement(3317206..3317631) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904286.1 CDS STU288_15995 NC_021151.1 3317638 3318372 R COG0811 Biopolymer transport proteins; biopolymer transport protein ExbB complement(3317638..3318372) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904287.1 CDS STU288_16000 NC_021151.1 3318365 3318514 R putative inner membrane protein complement(3318365..3318514) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904288.1 CDS STU288_16005 NC_021151.1 3318624 3319811 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase 3318624..3319811 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904289.1 CDS STU288_16010 NC_021151.1 3319951 3320610 D COG0586 Uncharacterized membrane-associated protein; DedA-family integral membrane protein 3319951..3320610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904290.1 CDS STU288_16015 NC_021151.1 3320674 3321591 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(3320674..3321591) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904291.1 CDS STU288_16020 NC_021151.1 3321766 3322929 D COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; aldehyde reductase 3321766..3322929 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904292.1 CDS dkgA NC_021151.1 3323035 3323862 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase A 3323035..3323862 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904293.1 CDS STU288_16030 NC_021151.1 3324028 3325512 D COG0471 Di- and tricarboxylate transporters; putative cation transporter 3324028..3325512 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904294.1 CDS STU288_16035 NC_021151.1 3325557 3326012 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad 3325557..3326012 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904295.1 CDS STU288_16040 NC_021151.1 3326170 3326364 R hypothetical protein complement(3326170..3326364) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904296.1 CDS STU288_16045 NC_021151.1 3326567 3328738 R COG1032 Fe-S oxidoreductase; hypothetical protein complement(3326567..3328738) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904297.1 CDS STU288_16050 NC_021151.1 3329226 3330209 D COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; trap dicarboxylate transporter subunit DctP 3329226..3330209 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904298.1 CDS STU288_16055 NC_021151.1 3330251 3330733 D COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; tripartite ATP-independent periplasmic 3330251..3330733 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904299.1 CDS STU288_16060 NC_021151.1 3330744 3332051 D COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; putative transport protein 3330744..3332051 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904300.1 CDS STU288_16065 NC_021151.1 3332096 3333508 R COG2132 Putative multicopper oxidases; FtsI repressor complement(3332096..3333508) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904301.1 CDS STU288_16070 NC_021151.1 3333582 3334319 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3333582..3334319) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904302.1 CDS STU288_16075 NC_021151.1 3334576 3336834 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA topoisomerase IV subunit A complement(3334576..3336834) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904303.1 CDS STU288_16080 NC_021151.1 3336945 3337811 R COG2207 AraC-type DNA-binding domain-containing proteins; putative regulatory protein complement(3336945..3337811) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904304.1 CDS STU288_16085 NC_021151.1 3337883 3338275 R COG3111 Uncharacterized conserved protein; Protein ygiW Flags: Precursor complement(3337883..3338275) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904305.1 CDS STU288_16090 NC_021151.1 3338427 3339086 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator QseB 3338427..3339086 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904306.1 CDS STU288_16095 NC_021151.1 3339083 3340432 D COG0642 Signal transduction histidine kinase; sensor protein QseC 3339083..3340432 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904307.1 CDS STU288_16100 NC_021151.1 3340539 3341120 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NADPH quinone reductase MdaB 3340539..3341120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904308.1 CDS STU288_16105 NC_021151.1 3341152 3341466 D COG1359 Uncharacterized conserved protein; quinol monooxygenase 3341152..3341466 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904309.1 CDS STU288_16110 NC_021151.1 3341591 3343483 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA topoisomerase IV subunit B complement(3341591..3343483) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904310.1 CDS STU288_16115 NC_021151.1 3343511 3344092 R COG3150 Predicted esterase; esterase YqiA complement(3343511..3344092) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904311.1 CDS STU288_16120 NC_021151.1 3344092 3344919 R COG1409 Predicted phosphohydrolases; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3344092..3344919) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904312.1 CDS STU288_16125 NC_021151.1 3344944 3345366 R COG3151 Uncharacterized protein conserved in bacteria; dehydrogenase complement(3344944..3345366) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904313.1 CDS nudF NC_021151.1 3345363 3345995 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase NudF complement(3345363..3345995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904314.1 CDS tolC NC_021151.1 3346202 3347671 D COG1538 Outer membrane protein; outer membrane channel protein 3346202..3347671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904315.1 CDS STU288_16140 NC_021151.1 3347884 3348555 D COG5463 Predicted integral membrane protein; hypothetical protein 3347884..3348555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904316.1 CDS STU288_16145 NC_021151.1 3348561 3349724 D COG0754 Glutathionylspermidine synthase; glutathionylspermidine synthase 3348561..3349724 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904317.1 CDS STU288_16150 NC_021151.1 3349786 3350574 R COG3384 Uncharacterized conserved protein; LigB family dioxygenase complement(3349786..3350574) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904318.1 CDS STU288_16155 NC_021151.1 3350715 3351488 D COG0428 Predicted divalent heavy-metal cations transporter; zinc transporter ZupT 3350715..3351488 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904319.1 CDS STU288_16160 NC_021151.1 3351555 3351731 R hypothetical protein complement(3351555..3351731) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904320.1 CDS STU288_16165 NC_021151.1 3352131 3353096 D putative arylsulfate sulfotransferase 3352131..3353096 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904321.1 CDS STU288_16170 NC_021151.1 3353132 3353926 D arylsulfate sulfotransferase 3353132..3353926 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904322.1 CDS STU288_16175 NC_021151.1 3353946 3354617 D COG0526 Thiol-disulfide isomerase and thioredoxins; disulfide isomerase 3353946..3354617 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904323.1 CDS STU288_16180 NC_021151.1 3354632 3355309 D COG1495 Disulfide bond formation protein DsbB; disulfide oxidoreductase 3354632..3355309 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904324.1 CDS STU288_16185 NC_021151.1 3355412 3355513 D hypothetical protein 3355412..3355513 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904325.1 CDS ribB NC_021151.1 3355480 3356133 R COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3355480..3356133) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904326.1 CDS STU288_16195 NC_021151.1 3356570 3356869 D COG2960 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3356570..3356869 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904327.1 CDS STU288_16200 NC_021151.1 3356943 3357152 R glycogen synthesis protein GlgS complement(3356943..3357152) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904328.1 CDS STU288_16205 NC_021151.1 3357410 3358030 D Inner membrane protein yqiJ 3357410..3358030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904329.1 CDS STU288_16210 NC_021151.1 3358049 3359728 D COG2268 Uncharacterized protein conserved in bacteria; Inner membrane protein yqiK 3358049..3359728 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904330.1 CDS STU288_16215 NC_021151.1 3360188 3361621 R COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3360188..3361621) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904331.1 CDS STU288_16220 NC_021151.1 3361669 3364512 R COG1391 Glutamine synthetase adenylyltransferase; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3361669..3364512) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904332.1 CDS STU288_16225 NC_021151.1 3364630 3365931 R COG3025 Uncharacterized conserved protein; adenylate cyclase complement(3364630..3365931) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904333.1 CDS STU288_16230 NC_021151.1 3366173 3366787 D COG3103 SH3 domain protein; hypothetical protein 3366173..3366787 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904334.1 CDS cca NC_021151.1 3366850 3368091 D COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3366850..3368091 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904335.1 CDS STU288_16240 NC_021151.1 3368196 3369017 R COG1968 Uncharacterized bacitracin resistance protein; undecaprenyl pyrophosphate phosphatase complement(3368196..3369017) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904336.1 CDS folB NC_021151.1 3369115 3369474 R COG1539 Dihydroneopterin aldolase; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3369115..3369474) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904337.1 CDS STU288_16250 NC_021151.1 3369581 3370192 D COG0344 Predicted membrane protein; glycerol-3-phosphate acyltransferase PlsY 3369581..3370192 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904338.1 CDS STU288_16255 NC_021151.1 3370443 3371456 R COG0533 Metal-dependent proteases with possible chaperone activity; UGMP family protein complement(3370443..3371456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904339.1 CDS STU288_16260 NC_021151.1 3371684 3371899 D COG0828 Ribosomal protein S21; SSU ribosomal protein S21P 3371684..3371899 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904340.1 CDS dnaG NC_021151.1 3372135 3373880 D COG0358 DNA primase (bacterial type); DNA primase 3372135..3373880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904341.1 CDS STU288_16270 NC_021151.1 3374030 3375877 D COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD 3374030..3375877 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904342.1 CDS STU288_16275 NC_021151.1 3376001 3376507 R COG3663 G:T/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase complement(3376001..3376507) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904343.1 CDS STU288_16280 NC_021151.1 3376788 3377555 R COG2375 Siderophore-interacting protein; siderophore-interacting protein complement(3376788..3377555) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904344.1 CDS STU288_16285 NC_021151.1 3377790 3378434 D COG1695 Predicted transcriptional regulators; transcriptional regulator 3377790..3378434 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904345.1 CDS STU288_16290 NC_021151.1 3378431 3379996 R COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) complement(3378431..3379996) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904346.1 CDS STU288_16295 NC_021151.1 3380384 3381904 R COG2202 FOG: PAS/PAC domain; aerotaxis receptor complement(3380384..3381904) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904347.1 CDS STU288_16300 NC_021151.1 3382307 3383713 D COG4992 Ornithine/acetylornithine aminotransferase; putrescine--2-oxoglutarate aminotransferase 3382307..3383713 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904348.1 CDS fadH NC_021151.1 3383884 3385902 D COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; 2,4-dienoyl-CoA reductase 3383884..3385902 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904349.1 CDS STU288_16310 NC_021151.1 3385983 3387119 R COG2813 16S RNA G1207 methylase RsmC; SAM-dependent 23S ribosomal RNA mG1835 methyltransferase complement(3385983..3387119) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904350.1 CDS STU288_16315 NC_021151.1 3387205 3387702 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 3387205..3387702 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904351.1 CDS STU288_16320 NC_021151.1 3387854 3388546 D COG2949 Uncharacterized membrane protein; putative integral membrane protein 3387854..3388546 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904352.1 CDS STU288_16325 NC_021151.1 3388635 3389633 D COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 3388635..3389633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904353.1 CDS STU288_16330 NC_021151.1 3389905 3390873 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; Inner membrane protein alx 3389905..3390873 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904354.1 CDS STU288_16335 NC_021151.1 3391127 3392371 D COG3633 Na+/serine symporter; serine/threonine transporter SstT 3391127..3392371 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904355.1 CDS STU288_16340 NC_021151.1 3392821 3393483 D COG0586 Uncharacterized membrane-associated protein; DedA family inner membrane protein YqjA 3392821..3393483 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904356.1 CDS STU288_16345 NC_021151.1 3393487 3393870 D EnvZ/OmpR regulon moderator 3393487..3393870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904357.1 CDS STU288_16350 NC_021151.1 3394015 3394383 D Protein yqjC Flags: Precursor 3394015..3394383 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904358.1 CDS STU288_16355 NC_021151.1 3394425 3394730 D hypothetical protein 3394425..3394730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904359.1 CDS STU288_16360 NC_021151.1 3394733 3395131 D Inner membrane protein yqjE 3394733..3395131 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904360.1 CDS STU288_16365 NC_021151.1 3395128 3395427 D hypothetical protein 3395128..3395427 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904361.1 CDS STU288_16370 NC_021151.1 3395665 3396057 D COG2259 Predicted membrane protein; hypothetical protein 3395665..3396057 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904362.1 CDS STU288_16375 NC_021151.1 3396125 3397111 D COG0435 Predicted glutathione S-transferase; glutathione S-transferase 3396125..3397111 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904363.1 CDS STU288_16380 NC_021151.1 3397235 3397600 D COG3152 Predicted membrane protein; Inner membrane protein yhaH 3397235..3397600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904364.1 CDS STU288_16385 NC_021151.1 3397639 3398535 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(3397639..3398535) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904365.1 CDS STU288_16390 NC_021151.1 3398640 3399341 D COG1741 Pirin-related protein; pirin 3398640..3399341 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904366.1 CDS STU288_16395 NC_021151.1 3399365 3399529 D putative cytoplasmic protein 3399365..3399529 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904367.1 CDS STU288_16400 NC_021151.1 3399642 3400952 R COG3681 Uncharacterized conserved protein; hypothetical protein complement(3399642..3400952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904368.1 CDS STU288_16405 NC_021151.1 3400978 3402309 R COG0814 Amino acid permeases; inner membrane transport protein YhaO complement(3400978..3402309) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904369.1 CDS STU288_16410 NC_021151.1 3402625 3403989 R COG1760 L-serine deaminase; L-serine dehydratase TdcG complement(3402625..3403989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904370.1 CDS STU288_16415 NC_021151.1 3404059 3406353 R COG1882 Pyruvate-formate lyase; keto-acid formate acetyltransferase complement(3404059..3406353) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904371.1 CDS STU288_16420 NC_021151.1 3406387 3407595 R COG0282 Acetate kinase; propionate/acetate kinase complement(3406387..3407595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904372.1 CDS STU288_16425 NC_021151.1 3407661 3408992 R COG0814 Amino acid permeases; threonine/serine transporter TdcC complement(3407661..3408992) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904373.1 CDS STU288_16430 NC_021151.1 3409013 3410002 R COG1171 Threonine dehydratase; threonine dehydratase complement(3409013..3410002) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904374.1 CDS STU288_16435 NC_021151.1 3410100 3411038 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator TdcA complement(3410100..3411038) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904375.1 CDS STU288_16440 NC_021151.1 3412836 3413981 R COG1929 Glycerate kinase; glycerate kinase I complement(3412836..3413981) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904376.1 CDS garR NC_021151.1 3414079 3414969 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase complement(3414079..3414969) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904377.1 CDS STU288_16450 NC_021151.1 3414995 3415765 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3414995..3415765) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904378.1 CDS garD NC_021151.1 3416295 3417866 D COG2721 Altronate dehydratase; galactarate dehydrogenase 3416295..3417866 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904379.1 CDS STU288_16460 NC_021151.1 3418106 3419053 R COG0524 Sugar kinases, ribokinase family; carbohydrate kinase complement(3418106..3419053) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904380.1 CDS STU288_16465 NC_021151.1 3419064 3419897 R COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor complement(3419064..3419897) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904381.1 CDS gatY NC_021151.1 3420231 3421085 D COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 3420231..3421085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904382.1 CDS STU288_16475 NC_021151.1 3421096 3422010 D COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); putative fructose-1-phosphate kinase 3421096..3422010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904383.1 CDS STU288_16480 NC_021151.1 3422037 3423464 D COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunit IIBC 3422037..3423464 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904384.1 CDS STU288_16485 NC_021151.1 3423451 3424257 D COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; PTS-transport family phosphoryl transfer protein 3423451..3424257 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904385.1 CDS STU288_16490 NC_021151.1 3424455 3425726 D COG4573 Predicted tagatose 6-phosphate kinase; D-tagatose-1,6-bisphosphate aldolase subunit GatZ 3424455..3425726 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904386.1 CDS STU288_16495 NC_021151.1 3425741 3426205 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system galactitol-specific transporter subunit IIA 3425741..3426205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904387.1 CDS STU288_16500 NC_021151.1 3426236 3426520 D COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system galactitol-specific transporter subunit IIB 3426236..3426520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904388.1 CDS gatC NC_021151.1 3426524 3427897 D COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC 3426524..3427897 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904389.1 CDS STU288_16510 NC_021151.1 3427941 3428984 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; galactitol-1-phosphate dehydrogenase 3427941..3428984 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904390.1 CDS STU288_16515 NC_021151.1 3429095 3429868 D COG1349 Transcriptional regulators of sugar metabolism; galactitol utilization operon repressor 3429095..3429868 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904391.1 CDS STU288_16520 NC_021151.1 3430026 3430889 R COG0313 Predicted methyltransferases; SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase complement(3430026..3430889) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904392.1 CDS STU288_16525 NC_021151.1 3430953 3432995 D COG3107 Putative lipoprotein; LppC family lipoprotein 3430953..3432995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904393.1 CDS STU288_16530 NC_021151.1 3432953 3433348 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 3432953..3433348 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904394.1 CDS STU288_16535 NC_021151.1 3433370 3433960 D COG0279 Phosphoheptose isomerase; DnaA initiator-associating protein DiaA 3433370..3433960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904395.1 CDS STU288_16540 NC_021151.1 3433970 3434545 D COG2823 Predicted periplasmic or secreted lipoprotein; outer membrane lipoprotein 3433970..3434545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904396.1 CDS STU288_16545 NC_021151.1 3434612 3435247 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; putative nucleoside-diphosphate-sugar epimerase complement(3434612..3435247) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904397.1 CDS STU288_16550 NC_021151.1 3435378 3435896 D COG0693 Putative intracellular protease/amidase; General stress protein 18 GSP18 3435378..3435896 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904398.1 CDS STU288_16555 NC_021151.1 3435876 3436319 R COG3787 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3435876..3436319) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904399.1 CDS STU288_16560 NC_021151.1 3436372 3436674 D COG2827 Predicted endonuclease containing a URI domain; GIY-YIG nuclease superfamily protein 3436372..3436674 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904400.1 CDS STU288_16565 NC_021151.1 3436661 3437164 R COG3153 Predicted acetyltransferase; putative acetyltransferase complement(3436661..3437164) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904401.1 CDS STU288_16570 NC_021151.1 3437158 3437682 R COG3154 Putative lipid carrier protein; hypothetical protein complement(3437158..3437682) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904402.1 CDS STU288_16575 NC_021151.1 3437899 3438894 D COG0826 Collagenase and related proteases; putative collagenase 3437899..3438894 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904403.1 CDS STU288_16580 NC_021151.1 3438903 3439781 D COG0826 Collagenase and related proteases; protease 3438903..3439781 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904404.1 CDS STU288_16585 NC_021151.1 3439959 3440966 D COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; hypothetical protein 3439959..3440966 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904405.1 CDS STU288_16590 NC_021151.1 3440944 3441663 R COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3440944..3441663) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904406.1 CDS STU288_16595 NC_021151.1 3441822 3442352 D hypothetical protein 3441822..3442352 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904407.1 CDS STU288_16600 NC_021151.1 3442413 3443657 R COG0814 Amino acid permeases; tryptophan permease complement(3442413..3443657) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904408.1 CDS STU288_16605 NC_021151.1 3443811 3445700 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DeaD complement(3443811..3445700) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904409.1 CDS STU288_16610 NC_021151.1 3445879 3446763 R COG4785 Lipoprotein NlpI, contains TPR repeats; lipoprotein NlpI complement(3445879..3446763) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904410.1 CDS STU288_16615 NC_021151.1 3446873 3449008 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(3446873..3449008) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904411.1 CDS rpsO NC_021151.1 3449250 3449519 R COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 complement(3449250..3449519) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904412.1 CDS truB NC_021151.1 3449670 3450614 R COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B complement(3449670..3450614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904413.1 CDS rbfA NC_021151.1 3450614 3451015 R COG0858 Ribosome-binding factor A; ribosome-binding factor A complement(3450614..3451015) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904414.1 CDS infB NC_021151.1 3451236 3453914 R COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 complement(3451236..3453914) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904415.1 CDS nusA NC_021151.1 3453939 3455441 R COG0195 Transcription elongation factor; transcription elongation factor NusA complement(3453939..3455441) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904416.1 CDS STU288_16645 NC_021151.1 3455469 3455921 R COG0779 Uncharacterized protein conserved in bacteria; ribosome maturation protein RimP complement(3455469..3455921) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904417.1 CDS STU288_16650 NC_021151.1 3456549 3457892 D COG0137 Argininosuccinate synthase; argininosuccinate synthase 3456549..3457892 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904418.1 CDS STU288_16655 NC_021151.1 3457978 3459042 R COG3878 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3457978..3459042) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904419.1 CDS secG NC_021151.1 3459478 3459810 R COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3459478..3459810) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904420.1 CDS glmM NC_021151.1 3460033 3461370 R COG1109 Phosphomannomutase; phosphoglucosamine mutase complement(3460033..3461370) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904421.1 CDS folP NC_021151.1 3461363 3462211 R COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase complement(3461363..3462211) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904422.1 CDS hflB NC_021151.1 3462316 3464250 R COG0465 ATP-dependent Zn proteases; ATP-dependent metalloprotease complement(3462316..3464250) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904423.1 CDS rrmJ NC_021151.1 3464354 3464980 R COG0293 23S rRNA methylase; 23S rRNA methyltransferase J complement(3464354..3464980) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904424.1 CDS STU288_16685 NC_021151.1 3465107 3465400 D COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; RNA-binding protein YhbY 3465107..3465400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904425.1 CDS greA NC_021151.1 3465556 3466032 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(3465556..3466032) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904426.1 CDS STU288_16695 NC_021151.1 3466086 3466187 R hypothetical protein complement(3466086..3466187) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904427.1 CDS STU288_16700 NC_021151.1 3466280 3467713 D COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase/endopeptidase 3466280..3467713 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904428.1 CDS STU288_16705 NC_021151.1 3467723 3467848 D hypothetical protein 3467723..3467848 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904429.1 CDS obgE NC_021151.1 3467845 3469017 R COG0536 Predicted GTPase; GTPase CgtA complement(3467845..3469017) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904430.1 CDS STU288_16715 NC_021151.1 3469033 3469374 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(3469033..3469374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904431.1 CDS STU288_16720 NC_021151.1 3469398 3469997 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transport protein complement(3469398..3469997) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904432.1 CDS rpmA NC_021151.1 3470127 3470384 R COG0211 Ribosomal protein L27; 50S ribosomal protein L27 complement(3470127..3470384) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904433.1 CDS rplU NC_021151.1 3470404 3470715 R COG0261 Ribosomal protein L21; 50S ribosomal protein L21 complement(3470404..3470715) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904434.1 CDS STU288_16735 NC_021151.1 3470973 3471944 D COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl diphosphate synthase 3470973..3471944 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904435.1 CDS STU288_16740 NC_021151.1 3472176 3472463 D COG3423 Predicted transcriptional regulator; DNA-binding transcriptional regulator Nlp 3472176..3472463 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904436.1 CDS STU288_16745 NC_021151.1 3472521 3473780 R COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3472521..3473780) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904437.1 CDS STU288_16750 NC_021151.1 3473834 3474088 R COG5007 Predicted transcriptional regulator, BolA superfamily; hypothetical protein complement(3473834..3474088) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904438.1 CDS STU288_16755 NC_021151.1 3474276 3474572 R COG3113 Predicted NTP binding protein (contains STAS domain); anti-sigma factor antagonist complement(3474276..3474572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904439.1 CDS STU288_16760 NC_021151.1 3474572 3475207 R COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; ABC transporter periplasmic binding protein MlaC complement(3474572..3475207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904440.1 CDS STU288_16765 NC_021151.1 3475226 3475777 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein complement(3475226..3475777) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904441.1 CDS STU288_16770 NC_021151.1 3475782 3476564 R COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; toluene ABC transporter permease complement(3475782..3476564) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904442.1 CDS STU288_16775 NC_021151.1 3476572 3477384 R COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein YrbF complement(3476572..3477384) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904443.1 CDS STU288_16780 NC_021151.1 3477597 3478574 D COG0530 Ca2+/Na+ antiporter; calcium/sodium:proton antiporter 3477597..3478574 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904444.1 CDS STU288_16785 NC_021151.1 3478588 3479574 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3478588..3479574 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904445.1 CDS STU288_16790 NC_021151.1 3479595 3480161 D COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3479595..3480161 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904446.1 CDS STU288_16795 NC_021151.1 3480158 3480733 D COG3117 Uncharacterized protein conserved in bacteria; lipopolysaccharide exporter periplasmic protein 3480158..3480733 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904447.1 CDS STU288_16800 NC_021151.1 3480702 3481256 D COG1934 Uncharacterized protein conserved in bacteria; lipopolysaccharide transport periplasmic protein LptA 3480702..3481256 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904448.1 CDS STU288_16805 NC_021151.1 3481263 3481988 D COG1137 ABC-type (unclassified) transport system, ATPase component; lipopolysaccharide ABC transporter ATP-binding protein 3481263..3481988 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904449.1 CDS STU288_16810 NC_021151.1 3482036 3483469 D COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 3482036..3483469 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904450.1 CDS STU288_16815 NC_021151.1 3483492 3483779 D COG1544 Ribosome-associated protein Y (PSrp-1); ribosome hibernation promoting factor HPF 3483492..3483779 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904451.1 CDS STU288_16820 NC_021151.1 3483897 3484388 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system nitrogen regulatory protein IIA(Ntr) 3483897..3484388 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904452.1 CDS STU288_16825 NC_021151.1 3484434 3485288 D COG1660 Predicted P-loop-containing kinase; glmZ(sRNA)-inactivating NTPase 3484434..3485288 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904453.1 CDS STU288_16830 NC_021151.1 3485285 3485557 D COG1925 Phosphotransferase system, HPr-related proteins; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3485285..3485557 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904454.1 CDS STU288_16835 NC_021151.1 3485806 3486438 D hypothetical protein 3485806..3486438 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904455.1 CDS mtgA NC_021151.1 3486513 3487241 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); monofunctional biosynthetic peptidoglycan transglycosylase complement(3486513..3487241) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904456.1 CDS STU288_16845 NC_021151.1 3487238 3487891 R COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; isoprenoid biosynthesis protein complement(3487238..3487891) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904457.1 CDS STU288_16850 NC_021151.1 3488118 3490454 R COG0642 Signal transduction histidine kinase; aerobic respiration control sensor protein ArcB complement(3488118..3490454) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904458.1 CDS STU288_16855 NC_021151.1 3490548 3491477 R COG1242 Predicted Fe-S oxidoreductase; Fe-S oxidoreductase complement(3490548..3491477) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904459.1 CDS gltB NC_021151.1 3492149 3496609 D COG0067 Glutamate synthase domain 1; glutamate synthase subunit alpha 3492149..3496609 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904460.1 CDS gltD NC_021151.1 3496619 3498037 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; glutamate synthase subunit beta 3496619..3498037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904461.1 CDS STU288_16870 NC_021151.1 3498244 3499347 D COG4804 Uncharacterized conserved protein; hypothetical protein 3498244..3499347 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904462.1 CDS codB NC_021151.1 3499464 3500717 D COG1457 Purine-cytosine permease and related proteins; cytosine permease 3499464..3500717 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904463.1 CDS STU288_16880 NC_021151.1 3500704 3501984 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; cytosine deaminase 3500704..3501984 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904464.1 CDS STU288_16885 NC_021151.1 3502067 3502534 R COG2731 Beta-galactosidase, beta subunit; hypothetical protein complement(3502067..3502534) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904465.1 CDS STU288_16890 NC_021151.1 3502531 3503406 R COG1940 Transcriptional regulator/sugar kinase; N-acetylmannosamine kinase complement(3502531..3503406) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904466.1 CDS STU288_16895 NC_021151.1 3503403 3504092 R COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase complement(3503403..3504092) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904467.1 CDS STU288_16900 NC_021151.1 3504139 3505629 R COG0477 Permeases of the major facilitator superfamily; sialic acid transporter complement(3504139..3505629) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904468.1 CDS STU288_16905 NC_021151.1 3505745 3506638 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; N-acetylneuraminate lyase complement(3505745..3506638) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904469.1 CDS STU288_16910 NC_021151.1 3506773 3507564 R COG2186 Transcriptional regulators; transcriptional regulator NanR complement(3506773..3507564) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904470.1 CDS STU288_16915 NC_021151.1 3507673 3508173 R COG2969 Stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(3507673..3508173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904471.1 CDS sspA NC_021151.1 3508179 3508817 R COG0625 Glutathione S-transferase; stringent starvation protein A complement(3508179..3508817) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904472.1 CDS STU288_16925 NC_021151.1 3509080 3509832 R hypothetical protein complement(3509080..3509832) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904473.1 CDS rpsI NC_021151.1 3510032 3510424 R COG0103 Ribosomal protein S9; 30S ribosomal protein S9 complement(3510032..3510424) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904474.1 CDS STU288_16935 NC_021151.1 3510440 3510868 R COG0102 Ribosomal protein L13; 50S ribosomal protein L13 complement(3510440..3510868) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904475.1 CDS STU288_16940 NC_021151.1 3511171 3512295 R COG1485 Predicted ATPase; ATP/GTP-binding protein complement(3511171..3512295) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904476.1 CDS STU288_16945 NC_021151.1 3512488 3512886 D COG3105 Uncharacterized protein conserved in bacteria; hypothetical protein 3512488..3512886 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904477.1 CDS STU288_16950 NC_021151.1 3513043 3514410 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3513043..3514410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904478.1 CDS STU288_16955 NC_021151.1 3514503 3515573 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3514503..3515573 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904479.1 CDS STU288_16960 NC_021151.1 3515607 3516338 R COG1767 Triphosphoribosyl-dephospho-CoA synthetase; hypothetical protein complement(3515607..3516338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904480.1 CDS STU288_16965 NC_021151.1 3516358 3517659 R COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion pump oxaloacetate decarboxylase beta chain complement(3516358..3517659) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904483.1 CDS STU288_16980 NC_021151.1 3519408 3519518 D hypothetical protein 3519408..3519518 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904484.1 CDS STU288_16985 NC_021151.1 3519465 3519719 R COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma complement(3519465..3519719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904485.1 CDS STU288_16990 NC_021151.1 3519875 3520492 R COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; L(+)-tartrate dehydratase subunit beta complement(3519875..3520492) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904486.1 CDS STU288_16995 NC_021151.1 3520492 3521391 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; tartrate dehydratase subunit alpha complement(3520492..3521391) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904487.1 CDS STU288_17000 NC_021151.1 3521424 3522692 R COG0471 Di- and tricarboxylate transporters; membrane transport protein complement(3521424..3522692) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904488.1 CDS STU288_17005 NC_021151.1 3522903 3523568 R COG1802 Transcriptional regulators; LysR family transcriptional regulator complement(3522903..3523568) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904489.1 CDS STU288_17010 NC_021151.1 3523555 3524184 R COG1802 Transcriptional regulators; Gluconate operon transcriptional repressor P28 protein complement(3523555..3524184) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904490.1 CDS STU288_17015 NC_021151.1 3524304 3525242 R COG0039 Malate/lactate dehydrogenases; malate dehydrogenase complement(3524304..3525242) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904491.1 CDS STU288_17020 NC_021151.1 3525656 3526126 D COG1438 Arginine repressor; arginine repressor 3525656..3526126 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904492.1 CDS STU288_17025 NC_021151.1 3526239 3526334 D hypothetical protein 3526239..3526334 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904493.1 CDS STU288_17030 NC_021151.1 3526491 3526754 D Protein ydgH Flags: Precursor 3526491..3526754 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904494.1 CDS STU288_17035 NC_021151.1 3526858 3527124 D Protein ydgH Flags: Precursor 3526858..3527124 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904495.1 CDS STU288_17040 NC_021151.1 3527184 3527456 R putative barnase inhibitor complement(3527184..3527456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904496.1 CDS STU288_17045 NC_021151.1 3527628 3529595 R COG1289 Predicted membrane protein; p-hydroxybenzoic acid efflux subunit AaeB complement(3527628..3529595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904497.1 CDS STU288_17050 NC_021151.1 3529601 3530533 R COG1566 Multidrug resistance efflux pump; p-hydroxybenzoic acid efflux subunit AaeA complement(3529601..3530533) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904498.1 CDS STU288_17055 NC_021151.1 3530541 3530744 R efflux system membrane protein complement(3530541..3530744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904499.1 CDS STU288_17060 NC_021151.1 3530926 3531855 D COG0583 Transcriptional regulator; transcriptional regulator 3530926..3531855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904500.1 CDS tldD NC_021151.1 3531978 3533423 R COG0312 Predicted Zn-dependent proteases and their inactivated homologs; protease TldD complement(3531978..3533423) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904501.1 CDS STU288_17070 NC_021151.1 3533568 3537368 R COG3164 Predicted membrane protein; hypothetical protein complement(3533568..3537368) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904502.1 CDS STU288_17075 NC_021151.1 3537475 3538944 R COG1530 Ribonucleases G and E; ribonuclease G complement(3537475..3538944) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904503.1 CDS STU288_17080 NC_021151.1 3538934 3539527 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(3538934..3539527) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904504.1 CDS STU288_17085 NC_021151.1 3539536 3540024 R COG2891 Cell shape-determining protein; rod shape-determining protein MreD complement(3539536..3540024) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904505.1 CDS STU288_17090 NC_021151.1 3540027 3541079 R COG1792 Cell shape-determining protein; rod shape-determining protein MreC complement(3540027..3541079) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904506.1 CDS STU288_17095 NC_021151.1 3541144 3542187 R COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB complement(3541144..3542187) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904507.1 CDS STU288_17100 NC_021151.1 3542495 3544435 R COG2199 FOG: GGDEF domain; regulatory protein CsrD complement(3542495..3544435) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904508.1 CDS STU288_17105 NC_021151.1 3544639 3545613 D COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; hypothetical protein 3544639..3545613 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904509.1 CDS STU288_17110 NC_021151.1 3545726 3546730 D COG2041 Sulfite oxidase and related enzymes; TMAO/DMSO reductase 3545726..3546730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904510.1 CDS STU288_17115 NC_021151.1 3546731 3547330 D COG2717 Predicted membrane protein; sulfite oxidase subunit YedZ 3546731..3547330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904511.1 CDS STU288_17120 NC_021151.1 3547723 3548193 D COG0511 Biotin carboxyl carrier protein; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3547723..3548193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904512.1 CDS STU288_17125 NC_021151.1 3548204 3549553 D COG0439 Biotin carboxylase; acetyl-CoA carboxylase biotin carboxylase subunit 3548204..3549553 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904513.1 CDS STU288_17130 NC_021151.1 3549662 3549904 D COG3924 Predicted membrane protein; hypothetical protein 3549662..3549904 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904514.1 CDS panF NC_021151.1 3549894 3551345 D COG4145 Na+/panthothenate symporter; sodium/panthothenate symporter 3549894..3551345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904515.1 CDS prmA NC_021151.1 3551357 3552238 D COG2264 Ribosomal protein L11 methylase; ribosomal protein L11 methyltransferase 3551357..3552238 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904516.1 CDS STU288_17145 NC_021151.1 3552899 3553864 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase B 3552899..3553864 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904517.1 CDS STU288_17150 NC_021151.1 3553890 3554186 D COG2901 Factor for inversion stimulation Fis, transcriptional activator; Factor for inversion stimulation Fis, transcriptional activator 3553890..3554186 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904518.1 CDS STU288_17155 NC_021151.1 3554272 3555156 D COG0863 DNA modification methylase; methyltransferase 3554272..3555156 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904519.1 CDS STU288_17160 NC_021151.1 3555239 3555403 D hypothetical protein 3555239..3555403 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904520.1 CDS STU288_17165 NC_021151.1 3555554 3557653 D COG3300 MHYT domain (predicted integral membrane sensor domain); putative signal transduction protein 3555554..3557653 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904521.1 CDS STU288_17170 NC_021151.1 3557656 3558324 R COG1309 Transcriptional regulator; DNA-binding transcriptional regulator EnvR complement(3557656..3558324) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904522.1 CDS STU288_17175 NC_021151.1 3558738 3559895 D COG0845 Membrane-fusion protein; acriflavine resistance protein E 3558738..3559895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904523.1 CDS STU288_17180 NC_021151.1 3559907 3563020 D COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrF 3559907..3563020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904524.1 CDS STU288_17185 NC_021151.1 3563256 3563477 D hypothetical protein 3563256..3563477 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904525.1 CDS STU288_17190 NC_021151.1 3569848 3570000 R hypothetical protein complement(3569848..3570000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904526.1 CDS STU288_17195 NC_021151.1 3570114 3570668 D COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; transferase 3570114..3570668 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904527.1 CDS STU288_17200 NC_021151.1 3570644 3570901 R hypothetical protein complement(3570644..3570901) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904528.1 CDS aroE NC_021151.1 3570898 3571716 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(3570898..3571716) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904529.1 CDS STU288_17210 NC_021151.1 3571721 3572293 R COG0009 Putative translation factor (SUA5); tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein complement(3571721..3572293) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904530.1 CDS STU288_17215 NC_021151.1 3572298 3572840 R COG0551 Zn-finger domain associated with topoisomerase type I; hypothetical protein complement(3572298..3572840) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904531.1 CDS STU288_17220 NC_021151.1 3572867 3573340 R COG2922 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3572867..3573340) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904532.1 CDS STU288_17225 NC_021151.1 3573312 3574436 R COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; hypothetical protein complement(3573312..3574436) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904533.1 CDS def NC_021151.1 3574568 3575077 D COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 3574568..3575077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904534.1 CDS fmt NC_021151.1 3575093 3576040 D COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3575093..3576040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904535.1 CDS STU288_17240 NC_021151.1 3576092 3577381 D COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase B 3576092..3577381 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904536.1 CDS trkA NC_021151.1 3577403 3578779 D COG0569 K+ transport systems, NAD-binding component; potassium transporter peripheral membrane component 3577403..3578779 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904537.1 CDS mscL NC_021151.1 3578921 3579334 D COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 3578921..3579334 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904538.1 CDS STU288_17255 NC_021151.1 3579270 3579539 R COG3036 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3579270..3579539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904539.1 CDS zntR NC_021151.1 3579597 3580022 R COG0789 Predicted transcriptional regulators; zinc-responsive transcriptional regulator complement(3579597..3580022) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904540.1 CDS STU288_17265 NC_021151.1 3580033 3580401 R hypothetical protein complement(3580033..3580401) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904541.1 CDS rplQ NC_021151.1 3580508 3580891 R COG0203 Ribosomal protein L17; 50S ribosomal protein L17 complement(3580508..3580891) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904542.1 CDS STU288_17275 NC_021151.1 3580932 3581921 R COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha complement(3580932..3581921) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904543.1 CDS rpsD NC_021151.1 3581947 3582567 R COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 complement(3581947..3582567) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904544.1 CDS STU288_17285 NC_021151.1 3582601 3582990 R COG0100 Ribosomal protein S11; 30S ribosomal protein S11 complement(3582601..3582990) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904545.1 CDS rpsM NC_021151.1 3583007 3583363 R COG0099 Ribosomal protein S13; 30S ribosomal protein S13 complement(3583007..3583363) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904546.1 CDS STU288_17295 NC_021151.1 3583510 3583626 R COG0257 Ribosomal protein L36; LSU ribosomal protein L36P complement(3583510..3583626) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904547.1 CDS secY NC_021151.1 3583658 3584989 R COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(3583658..3584989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904548.1 CDS STU288_17305 NC_021151.1 3584997 3585431 R COG0200 Ribosomal protein L15; 50S ribosomal protein L15 complement(3584997..3585431) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904549.1 CDS rpmD NC_021151.1 3585435 3585614 R COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 complement(3585435..3585614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904550.1 CDS rpsE NC_021151.1 3585618 3586121 R COG0098 Ribosomal protein S5; 30S ribosomal protein S5 complement(3585618..3586121) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904551.1 CDS rplR NC_021151.1 3586136 3586489 R COG0256 Ribosomal protein L18; 50S ribosomal protein L18 complement(3586136..3586489) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904552.1 CDS rplF NC_021151.1 3586499 3587032 R COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 complement(3586499..3587032) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904553.1 CDS STU288_17330 NC_021151.1 3587045 3587437 R COG0096 Ribosomal protein S8; 30S ribosomal protein S8 complement(3587045..3587437) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904554.1 CDS rpsN NC_021151.1 3587471 3587776 R COG0199 Ribosomal protein S14; 30S ribosomal protein S14 complement(3587471..3587776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904555.1 CDS rplE NC_021151.1 3587791 3588330 R COG0094 Ribosomal protein L5; 50S ribosomal protein L5 complement(3587791..3588330) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904556.1 CDS STU288_17345 NC_021151.1 3588345 3588659 R COG0198 Ribosomal protein L24; 50S ribosomal protein L24 complement(3588345..3588659) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904557.1 CDS rplN NC_021151.1 3588670 3589041 R COG0093 Ribosomal protein L14; 50S ribosomal protein L14 complement(3588670..3589041) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904558.1 CDS rpsQ NC_021151.1 3589205 3589459 R COG0186 Ribosomal protein S17; 30S ribosomal protein S17 complement(3589205..3589459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904559.1 CDS STU288_17360 NC_021151.1 3589459 3589650 R COG0255 Ribosomal protein L29; 50S ribosomal protein L29 complement(3589459..3589650) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904560.1 CDS rplP NC_021151.1 3589650 3590060 R COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 complement(3589650..3590060) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904561.1 CDS STU288_17370 NC_021151.1 3590073 3590774 R COG0092 Ribosomal protein S3; 30S ribosomal protein S3 complement(3590073..3590774) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904562.1 CDS STU288_17375 NC_021151.1 3590792 3591124 R COG0091 Ribosomal protein L22; 50S ribosomal protein L22 complement(3590792..3591124) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904563.1 CDS rpsS NC_021151.1 3591139 3591417 R COG0185 Ribosomal protein S19; 30S ribosomal protein S19 complement(3591139..3591417) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904564.1 CDS rplB NC_021151.1 3591434 3592255 R COG0090 Ribosomal protein L2; 50S ribosomal protein L2 complement(3591434..3592255) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904565.1 CDS rplW NC_021151.1 3592273 3592575 R COG0089 Ribosomal protein L23; 50S ribosomal protein L23 complement(3592273..3592575) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904566.1 CDS STU288_17395 NC_021151.1 3592572 3593177 R COG0088 Ribosomal protein L4; LSU ribosomal protein L4P complement(3592572..3593177) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904567.1 CDS rplC NC_021151.1 3593188 3593817 R COG0087 Ribosomal protein L3; 50S ribosomal protein L3 complement(3593188..3593817) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904568.1 CDS STU288_17405 NC_021151.1 3593850 3594161 R COG0051 Ribosomal protein S10; SSU ribosomal protein S10P complement(3593850..3594161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904569.1 CDS STU288_17410 NC_021151.1 3594541 3595008 D COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; type III leader peptidase 3594541..3595008 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904570.1 CDS STU288_17415 NC_021151.1 3595005 3595481 R COG2193 Bacterioferritin (cytochrome b1); bacterioferritin complement(3595005..3595481) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904571.1 CDS STU288_17420 NC_021151.1 3595554 3595748 R COG2906 Bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin complement(3595554..3595748) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904572.1 CDS STU288_17425 NC_021151.1 3595761 3595952 R COG4267 Predicted membrane protein; elongation factor Tu complement(3595761..3595952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904573.1 CDS STU288_17430 NC_021151.1 3595933 3597117 R COG0050 GTPases - translation elongation factors; Elongation factor Tu complement(3595933..3597117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904574.1 CDS STU288_17435 NC_021151.1 3597189 3599303 R COG0480 Translation elongation factors (GTPases); elongation factor G complement(3597189..3599303) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904575.1 CDS STU288_17440 NC_021151.1 3599400 3599846 R COG0049 Ribosomal protein S7; 30S ribosomal protein S7 complement(3599400..3599846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904576.1 CDS STU288_17445 NC_021151.1 3599824 3600111 R COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur; sulfur transfer complex subunit TusB complement(3599824..3600111) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904577.1 CDS STU288_17450 NC_021151.1 3600119 3600475 R COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; sulfur relay protein TusC complement(3600119..3600475) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904578.1 CDS STU288_17455 NC_021151.1 3600475 3600861 R COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; sulfur transfer complex subunit TusD complement(3600475..3600861) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904579.1 CDS STU288_17460 NC_021151.1 3600861 3601583 R COG2964 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3600861..3601583) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904580.1 CDS STU288_17465 NC_021151.1 3601860 3602678 R COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3601860..3602678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904581.1 CDS STU288_17470 NC_021151.1 3602898 3603116 D COG2900 Uncharacterized protein conserved in bacteria; lysis protein 3602898..3603116 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904582.1 CDS STU288_17475 NC_021151.1 3603304 3603894 R COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3603304..3603894) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904583.1 CDS STU288_17480 NC_021151.1 3603989 3604189 R COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; hypothetical protein complement(3603989..3604189) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904584.1 CDS STU288_17485 NC_021151.1 3604200 3606005 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefB complement(3604200..3606005) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904585.1 CDS STU288_17490 NC_021151.1 3606005 3606556 R COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefG complement(3606005..3606556) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904586.1 CDS STU288_17495 NC_021151.1 3606822 3608729 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 3606822..3608729 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904587.1 CDS STU288_17500 NC_021151.1 3608892 3609113 D COG0583 Transcriptional regulator; hypothetical protein 3608892..3609113 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904588.1 CDS STU288_17505 NC_021151.1 3609115 3609426 R monooxygenase complement(3609115..3609426) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904589.1 CDS STU288_17510 NC_021151.1 3609669 3610691 D COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; hydrolase 3609669..3610691 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904590.1 CDS STU288_17515 NC_021151.1 3610688 3610906 D COG3089 Uncharacterized protein conserved in bacteria; hypothetical protein 3610688..3610906 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904591.1 CDS STU288_17520 NC_021151.1 3610958 3611827 D COG3954 Phosphoribulokinase; phosphoribulokinase 3610958..3611827 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904592.1 CDS STU288_17525 NC_021151.1 3611923 3612327 R COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(3611923..3612327) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904593.1 CDS STU288_17530 NC_021151.1 3612635 3613267 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional dual regulator Crp 3612635..3613267 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904594.1 CDS STU288_17535 NC_021151.1 3613316 3615403 D COG1289 Predicted membrane protein; YccS/YhfK family integral membrane protein 3613316..3615403 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904595.1 CDS argD NC_021151.1 3615446 3616663 R COG4992 Ornithine/acetylornithine aminotransferase; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3615446..3616663) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904596.1 CDS STU288_17545 NC_021151.1 3616749 3617312 R COG0512 Anthranilate/para-aminobenzoate synthases component II; para-aminobenzoate synthase component II complement(3616749..3617312) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904597.1 CDS STU288_17550 NC_021151.1 3617344 3617946 R COG2184 Protein involved in cell division; cell filamentation protein Fic complement(3617344..3617946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904598.1 CDS STU288_17555 NC_021151.1 3617936 3618103 R hypothetical protein complement(3617936..3618103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904599.1 CDS STU288_17560 NC_021151.1 3618212 3618784 R COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase A (rotamase A) complement(3618212..3618784) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904600.1 CDS STU288_17565 NC_021151.1 3619061 3620242 D COG0477 Permeases of the major facilitator superfamily; transporter 3619061..3620242 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904601.1 CDS STU288_17570 NC_021151.1 3620505 3623048 D COG1251 NAD(P)H-nitrite reductase; nitrite reductase subunit NirD 3620505..3623048 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904602.1 CDS nirD NC_021151.1 3623045 3623371 D COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; nitrite reductase small subunit 3623045..3623371 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904603.1 CDS STU288_17580 NC_021151.1 3623637 3624446 D COG2116 Formate/nitrite family of transporters; nitrite transporter NirC 3623637..3624446 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904604.1 CDS cysG NC_021151.1 3624458 3625831 D COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); siroheme synthase 3624458..3625831 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904605.1 CDS STU288_17590 NC_021151.1 3626166 3632018 D putative surface-exposed virulence protein 3626166..3632018 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904606.1 CDS STU288_17595 NC_021151.1 3632151 3632609 R COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 complement(3632151..3632609) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904607.1 CDS STU288_17600 NC_021151.1 3632923 3633093 D outer membrane lipoprotein 3632923..3633093 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904608.1 CDS STU288_17605 NC_021151.1 3633238 3634242 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase complement(3633238..3634242) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904609.1 CDS STU288_17610 NC_021151.1 3634235 3634993 R COG0546 Predicted phosphatases; phosphoglycolate phosphatase complement(3634235..3634993) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904610.1 CDS STU288_17615 NC_021151.1 3634986 3635663 R COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(3634986..3635663) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904611.1 CDS STU288_17620 NC_021151.1 3635681 3636517 R COG0338 Site-specific DNA methylase; DNA adenine methylase complement(3635681..3636517) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904612.1 CDS STU288_17625 NC_021151.1 3636698 3637975 R COG3266 Uncharacterized protein conserved in bacteria; cell division protein DamX complement(3636698..3637975) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904613.1 CDS aroB NC_021151.1 3638073 3639161 R COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase complement(3638073..3639161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904614.1 CDS aroK NC_021151.1 3639218 3639739 R COG0703 Shikimate kinase; shikimate kinase I complement(3639218..3639739) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904615.1 CDS hofQ NC_021151.1 3640204 3641442 R COG4796 Type II secretory pathway, component HofQ; outer membrane porin HofQ complement(3640204..3641442) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904616.1 CDS STU288_17645 NC_021151.1 3641357 3641758 R putative inner membrane protein complement(3641357..3641758) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904617.1 CDS STU288_17650 NC_021151.1 3641748 3642221 R hypothetical protein complement(3641748..3642221) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904618.1 CDS STU288_17655 NC_021151.1 3642205 3642744 R COG3166 Tfp pilus assembly protein PilN; PilN family protein complement(3642205..3642744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904619.1 CDS STU288_17660 NC_021151.1 3642744 3643523 R putative pilus assembly protein complement(3642744..3643523) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904620.1 CDS mrcA NC_021151.1 3643644 3646196 D COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a 3643644..3646196 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904621.1 CDS nudE NC_021151.1 3646292 3646855 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; adenosine nucleotide hydrolase NudE complement(3646292..3646855) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904622.1 CDS STU288_17675 NC_021151.1 3647178 3649310 D COG3538 Uncharacterized conserved protein; IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system 3647178..3649310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904623.1 CDS STU288_17680 NC_021151.1 3649375 3650043 D COG1011 Predicted hydrolase (HAD superfamily); GMP/IMP nucleotidase 3649375..3650043 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904624.1 CDS STU288_17685 NC_021151.1 3650054 3650455 D COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 3650054..3650455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904625.1 CDS hslO NC_021151.1 3650480 3651358 D COG1281 Disulfide bond chaperones of the HSP33 family; Hsp33-like chaperonin 3650480..3651358 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904626.1 CDS STU288_17695 NC_021151.1 3651468 3653177 R hypothetical protein complement(3651468..3653177) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904627.1 CDS STU288_17700 NC_021151.1 3653557 3655176 D COG1866 Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 3653557..3655176 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904628.1 CDS envZ NC_021151.1 3655251 3656603 R COG0642 Signal transduction histidine kinase; osmolarity sensor protein complement(3655251..3656603) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904629.1 CDS ompR NC_021151.1 3656600 3657319 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; osmolarity response regulator complement(3656600..3657319) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904630.1 CDS greB NC_021151.1 3657545 3658018 D COG0782 Transcription elongation factor; transcription elongation factor GreB 3657545..3658018 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904631.1 CDS STU288_17720 NC_021151.1 3658117 3660447 D COG2183 Transcriptional accessory protein; transcriptional accessory protein 3658117..3660447 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904632.1 CDS feoA NC_021151.1 3660884 3661111 D COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 3660884..3661111 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904633.1 CDS feoB NC_021151.1 3661130 3663448 D COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 3661130..3663448 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904634.1 CDS STU288_17735 NC_021151.1 3663461 3663697 D ferrous iron transport protein FeoC 3663461..3663697 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904635.1 CDS STU288_17740 NC_021151.1 3663932 3664846 D Transposase 3663932..3664846 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904636.1 CDS STU288_17745 NC_021151.1 3664882 3665652 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); carboxylesterase BioH complement(3664882..3665652) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904637.1 CDS STU288_17750 NC_021151.1 3665690 3666373 D COG1040 Predicted amidophosphoribosyltransferases; DNA utilization protein GntX 3665690..3666373 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904638.1 CDS STU288_17755 NC_021151.1 3666432 3667007 D COG0316 Uncharacterized conserved protein; Fe/S biogenesis protein NfuA 3666432..3667007 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904639.1 CDS STU288_17760 NC_021151.1 3667384 3668700 D COG2610 H+/gluconate symporter and related permeases; high-affinity gluconate transporter 3667384..3668700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904640.1 CDS malQ NC_021151.1 3668819 3670897 R COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(3668819..3670897) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904641.1 CDS STU288_17770 NC_021151.1 3670907 3673300 R COG0058 Glucan phosphorylase; maltodextrin phosphorylase complement(3670907..3673300) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904642.1 CDS STU288_17775 NC_021151.1 3673894 3676599 D COG2909 ATP-dependent transcriptional regulator; transcriptional regulator MalT 3673894..3676599 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904643.1 CDS STU288_17780 NC_021151.1 3676687 3676962 R COG3041 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3676687..3676962) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904644.1 CDS STU288_17785 NC_021151.1 3676965 3677225 R COG3077 DNA-damage-inducible protein J; antitoxin DinJ complement(3676965..3677225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904645.1 CDS STU288_17790 NC_021151.1 3677334 3678353 R COG0430 RNA 3'-terminal phosphate cyclase; RNA 3'-terminal-phosphate cyclase complement(3677334..3678353) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904646.1 CDS STU288_17795 NC_021151.1 3678357 3679571 R COG1690 Uncharacterized conserved protein; putative cytoplasmic protein complement(3678357..3679571) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904647.1 CDS STU288_17800 NC_021151.1 3679764 3681347 D COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; transcriptional regulatory protein RtcR 3679764..3681347 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904648.1 CDS STU288_17805 NC_021151.1 3681344 3682102 R COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor GlpR complement(3681344..3682102) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904649.1 CDS STU288_17810 NC_021151.1 3682196 3683026 R COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); intramembrane serine protease GlpG complement(3682196..3683026) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904650.1 CDS glpE NC_021151.1 3683102 3683428 R COG0607 Rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase complement(3683102..3683428) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904651.1 CDS glpD NC_021151.1 3683627 3685135 D COG0578 Glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 3683627..3685135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904652.1 CDS STU288_17825 NC_021151.1 3685182 3685727 R hypothetical protein complement(3685182..3685727) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904653.1 CDS STU288_17830 NC_021151.1 3685737 3687233 R COG0226 ABC-type phosphate transport system, periplasmic component; periplasmic phosphate-binding protein complement(3685737..3687233) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904654.1 CDS gldA NC_021151.1 3687390 3688499 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(3687390..3688499) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904655.1 CDS STU288_17840 NC_021151.1 3688837 3690171 D COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein 3688837..3690171 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904656.1 CDS STU288_17845 NC_021151.1 3690168 3691883 D COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxyacid dehydratase 3690168..3691883 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904657.1 CDS STU288_17850 NC_021151.1 3691927 3692832 D COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthetase 3691927..3692832 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904658.1 CDS STU288_17855 NC_021151.1 3692876 3693631 R COG1414 Transcriptional regulator; transcriptional regulator complement(3692876..3693631) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904659.1 CDS STU288_17860 NC_021151.1 3693809 3696256 R COG0058 Glucan phosphorylase; glycogen phosphorylase complement(3693809..3696256) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904660.1 CDS glgA NC_021151.1 3696276 3697709 R COG0297 Glycogen synthase; glycogen synthase complement(3696276..3697709) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904661.1 CDS glgC NC_021151.1 3697709 3699004 R COG0448 ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase complement(3697709..3699004) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904662.1 CDS STU288_17875 NC_021151.1 3699019 3700995 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen debranching enzyme complement(3699019..3700995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904663.1 CDS STU288_17880 NC_021151.1 3700992 3703178 R COG0296 1,4-alpha-glucan branching enzyme; glycogen branching enzyme complement(3700992..3703178) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904664.1 CDS STU288_17885 NC_021151.1 3703525 3704631 R COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(3703525..3704631) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904665.1 CDS STU288_17890 NC_021151.1 3704758 3705138 D putative inner membrane protein 3704758..3705138 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904666.1 CDS STU288_17895 NC_021151.1 3705055 3706395 R COG2610 H+/gluconate symporter and related permeases; low affinity gluconate transporter complement(3705055..3706395) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904667.1 CDS gntK NC_021151.1 3706392 3706925 R COG3265 Gluconate kinase; gluconate kinase 1 complement(3706392..3706925) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904668.1 CDS STU288_17905 NC_021151.1 3707064 3708059 R COG1609 Transcriptional regulators; gluconate operon transcriptional regulator complement(3707064..3708059) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904669.1 CDS STU288_17910 NC_021151.1 3708189 3708884 R COG1741 Pirin-related protein; pirin complement(3708189..3708884) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904670.1 CDS STU288_17915 NC_021151.1 3709008 3710045 R COG0673 Predicted dehydrogenases and related proteins; oxidoreductase complement(3709008..3710045) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904671.1 CDS STU288_17920 NC_021151.1 3710514 3711002 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase YhhY 3710514..3711002 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904672.1 CDS STU288_17925 NC_021151.1 3711266 3712480 D COG1349 Transcriptional regulators of sugar metabolism; putative ribokinase 3711266..3712480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904673.1 CDS STU288_17930 NC_021151.1 3712496 3713239 D COG5426 Uncharacterized membrane protein; hypothetical protein 3712496..3713239 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904674.1 CDS STU288_17935 NC_021151.1 3713311 3714282 D COG3238 Uncharacterized protein conserved in bacteria; putative inner membrane protein 3713311..3714282 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904675.1 CDS STU288_17940 NC_021151.1 3714279 3715313 D COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold; phosphotriesterase 3714279..3715313 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904676.1 CDS ggt NC_021151.1 3715358 3717100 R COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase complement(3715358..3717100) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904677.1 CDS STU288_17950 NC_021151.1 3717226 3717642 D hypothetical protein 3717226..3717642 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904678.1 CDS ugpQ NC_021151.1 3717655 3718395 R COG0584 Glycerophosphoryl diester phosphodiesterase; cytoplasmic glycerophosphodiester phosphodiesterase complement(3717655..3718395) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904679.1 CDS ugpC NC_021151.1 3718392 3719462 R COG3839 ABC-type sugar transport systems, ATPase components; glycerol-3-phosphate transporter ATP-binding subunit complement(3718392..3719462) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904680.1 CDS STU288_17965 NC_021151.1 3719464 3720309 R COG0395 ABC-type sugar transport system, permease component; glycerol-3-phosphate transporter membrane protein complement(3719464..3720309) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904681.1 CDS STU288_17970 NC_021151.1 3720306 3721193 R COG1175 ABC-type sugar transport systems, permease components; glycerol-3-phosphate transporter permease complement(3720306..3721193) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904682.1 CDS STU288_17975 NC_021151.1 3721257 3722573 R COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate transporter periplasmic binding protein complement(3721257..3722573) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904683.1 CDS STU288_17980 NC_021151.1 3722832 3723200 R COG3654 Prophage maintenance system killer protein; death-on-curing protein complement(3722832..3723200) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904684.1 CDS STU288_17985 NC_021151.1 3723197 3723418 R COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein complement(3723197..3723418) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904685.1 CDS livF NC_021151.1 3723550 3724251 R COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit complement(3723550..3724251) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904686.1 CDS livG NC_021151.1 3724265 3725032 R COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit complement(3724265..3725032) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904687.1 CDS livM NC_021151.1 3725029 3726306 R COG4177 ABC-type branched-chain amino acid transport system, permease component; leucine/isoleucine/valine transporter permease subunit complement(3725029..3726306) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904688.1 CDS STU288_18005 NC_021151.1 3726303 3727229 R COG0559 Branched-chain amino acid ABC-type transport system, permease components; branched-chain amino acid transporter permease subunit LivH complement(3726303..3727229) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904689.1 CDS STU288_18010 NC_021151.1 3727289 3728398 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK complement(3727289..3728398) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904690.1 CDS STU288_18015 NC_021151.1 3728820 3729203 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 3728820..3729203 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904691.1 CDS STU288_18020 NC_021151.1 3729398 3730501 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK complement(3729398..3730501) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904692.1 CDS STU288_18025 NC_021151.1 3730823 3731677 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase factor sigma-32 complement(3730823..3731677) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904693.1 CDS ftsX NC_021151.1 3731923 3732978 R COG2177 Cell division protein; cell division ABC transporter subunit FtsX complement(3731923..3732978) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904694.1 CDS STU288_18035 NC_021151.1 3732971 3733639 R COG2884 Predicted ATPase involved in cell division; cell division protein FtsE complement(3732971..3733639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904695.1 CDS STU288_18040 NC_021151.1 3733642 3735117 R COG0552 Signal recognition particle GTPase; signal recognition particle-docking protein FtsY complement(3733642..3735117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904696.1 CDS rsmD NC_021151.1 3735243 3735839 D COG0742 N6-adenine-specific methylase; 16S rRNA m(2)G966-methyltransferase 3735243..3735839 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904697.1 CDS STU288_18050 NC_021151.1 3735829 3736098 D COG3776 Predicted membrane protein; hypothetical protein 3735829..3736098 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904698.1 CDS STU288_18055 NC_021151.1 3736120 3736491 R inner membrane protein complement(3736120..3736491) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904699.1 CDS STU288_18060 NC_021151.1 3736633 3737259 D COG3714 Predicted membrane protein; putative membrane protein yhhN 3736633..3737259 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904700.1 CDS zntA NC_021151.1 3737340 3739538 D COG2217 Cation transport ATPase; zinc/cadmium/mercury/lead-transporting ATPase 3737340..3739538 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904701.1 CDS STU288_18070 NC_021151.1 3739738 3741381 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis citrate transducer 3739738..3741381 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904702.1 CDS STU288_18075 NC_021151.1 3741405 3741650 R COG0425 Predicted redox protein, regulator of disulfide bond formation; sulfurtransferase tusA complement(3741405..3741650) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904703.1 CDS STU288_18080 NC_021151.1 3741820 3742485 D COG1738 Uncharacterized conserved protein; hypothetical protein 3741820..3742485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904704.1 CDS STU288_18085 NC_021151.1 3742558 3743115 D hypothetical protein 3742558..3743115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904705.1 CDS STU288_18090 NC_021151.1 3743119 3744336 R COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter complement(3743119..3744336) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904706.1 CDS STU288_18095 NC_021151.1 3744468 3745517 D COG0628 Predicted permease; hypothetical protein 3744468..3745517 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904707.1 CDS STU288_18100 NC_021151.1 3745569 3746147 D COG2091 Phosphopantetheinyl transferase; holo-ACP synthase 3745569..3746147 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904708.1 CDS STU288_18105 NC_021151.1 3746239 3746640 D COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 3746239..3746640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904709.1 CDS STU288_18110 NC_021151.1 3746730 3747854 R COG0842 ABC-type multidrug transport system, permease component; ABC-2 type superfamily transport protein complement(3746730..3747854) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904710.1 CDS STU288_18115 NC_021151.1 3747854 3750595 R COG1131 ABC-type multidrug transport system, ATPase component; putative multidrug ABC transporter ATP-binding protein complement(3747854..3750595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904711.1 CDS STU288_18120 NC_021151.1 3750592 3751659 R COG0845 Membrane-fusion protein; HlyD family secretion protein complement(3750592..3751659) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904712.1 CDS STU288_18125 NC_021151.1 3751965 3753161 R COG2081 Predicted flavoproteins; hypothetical protein complement(3751965..3753161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904713.1 CDS STU288_18130 NC_021151.1 3753392 3754888 D COG0306 Phosphate/sulphate permeases; phosphate transporter PitA 3753392..3754888 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904714.1 CDS STU288_18135 NC_021151.1 3755028 3755363 R universal stress protein UspB complement(3755028..3755363) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904715.1 CDS STU288_18140 NC_021151.1 3755751 3756185 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress global response regulator UspA 3755751..3756185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904716.1 CDS STU288_18145 NC_021151.1 3756510 3757979 D COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease B 3756510..3757979 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904717.1 CDS STU288_18150 NC_021151.1 3758071 3758829 R COG0500 SAM-dependent methyltransferases; methyltransferase complement(3758071..3758829) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904718.1 CDS STU288_18155 NC_021151.1 3758836 3760878 R COG0339 Zn-dependent oligopeptidases; oligopeptidase A complement(3758836..3760878) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904719.1 CDS STU288_18160 NC_021151.1 3761060 3762331 R COG0671 Membrane-associated phospholipid phosphatase; phosphatase complement(3761060..3762331) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904720.1 CDS STU288_18165 NC_021151.1 3762542 3763384 D COG2961 Protein involved in catabolism of external DNA; DNA utilization protein YhiR 3762542..3763384 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904721.1 CDS STU288_18170 NC_021151.1 3763489 3764841 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; glutathione reductase 3763489..3764841 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904722.1 CDS STU288_18175 NC_021151.1 3764888 3765931 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase complement(3764888..3765931) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904723.1 CDS STU288_18180 NC_021151.1 3765990 3767309 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(3765990..3767309) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904724.1 CDS STU288_18185 NC_021151.1 3767363 3768208 R COG0524 Sugar kinases, ribokinase family; carbohydrate kinase complement(3767363..3768208) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904725.1 CDS STU288_18190 NC_021151.1 3768272 3769246 R COG2222 Predicted phosphosugar isomerases; phosphosugar-binding protein complement(3768272..3769246) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904726.1 CDS STU288_18195 NC_021151.1 3769425 3770144 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(3769425..3770144) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904727.1 CDS treF NC_021151.1 3770470 3772119 D COG1626 Neutral trehalase; trehalase 3770470..3772119 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904728.1 CDS STU288_18205 NC_021151.1 3772132 3773721 R hypothetical protein complement(3772132..3773721) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904729.1 CDS STU288_18210 NC_021151.1 3774002 3774358 D COG3772 Phage-related lysozyme (muraminidase); phage endolysin 3774002..3774358 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904730.1 CDS STU288_18215 NC_021151.1 3774364 3774966 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative transcriptional regulator complement(3774364..3774966) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904731.1 CDS STU288_18220 NC_021151.1 3775597 3776496 D COG0583 Transcriptional regulator; putative transcriptional regulator 3775597..3776496 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904732.1 CDS STU288_18225 NC_021151.1 3776569 3777597 D COG1295 Predicted membrane protein; ribonuclease 3776569..3777597 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904733.1 CDS STU288_18230 NC_021151.1 3777948 3779270 D COG0477 Permeases of the major facilitator superfamily; Proline/betaine transporter Proline porter II 3777948..3779270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904734.1 CDS STU288_18235 NC_021151.1 3779310 3781370 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; hypothetical protein complement(3779310..3781370) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904735.1 CDS STU288_18240 NC_021151.1 3781480 3782247 R COG2200 FOG: EAL domain; cyclic-di-GMP phosphodiesterase complement(3781480..3782247) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904736.1 CDS STU288_18245 NC_021151.1 3782476 3783405 D COG0524 Sugar kinases, ribokinase family; ketodeoxygluconokinase KdgK 3782476..3783405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904737.1 CDS STU288_18250 NC_021151.1 3783459 3784946 R COG0612 Predicted Zn-dependent peptidases; putative zinc protease pqqL complement(3783459..3784946) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904738.1 CDS STU288_18255 NC_021151.1 3785166 3786452 R COG1301 Na+/H+-dicarboxylate symporters; C4-dicarboxylate transporter DctA complement(3785166..3786452) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904739.1 CDS STU288_18260 NC_021151.1 3786610 3788616 R COG2199 FOG: GGDEF domain; diguanylate cyclase complement(3786610..3788616) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904740.1 CDS STU288_18265 NC_021151.1 3788790 3792332 R COG0457 FOG: TPR repeat; cellulose synthase subunit BcsC complement(3788790..3792332) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904741.1 CDS STU288_18270 NC_021151.1 3792314 3793420 R COG3405 Endoglucanase Y; endo-1,4-D-glucanase complement(3792314..3793420) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904742.1 CDS STU288_18275 NC_021151.1 3793427 3795727 R cellulose synthase regulator protein complement(3793427..3795727) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904743.1 CDS bcsA NC_021151.1 3795738 3798362 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; cellulose synthase catalytic subunit complement(3795738..3798362) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904744.1 CDS STU288_18285 NC_021151.1 3798359 3799111 R COG1192 ATPases involved in chromosome partitioning; cell division protein complement(3798359..3799111) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904745.1 CDS STU288_18290 NC_021151.1 3799112 3799315 R hypothetical protein complement(3799112..3799315) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904746.1 CDS STU288_18295 NC_021151.1 3799560 3801131 D cellulose biosynthesis protein BcsE 3799560..3801131 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904747.1 CDS STU288_18300 NC_021151.1 3801128 3801319 D hypothetical protein 3801128..3801319 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904748.1 CDS STU288_18305 NC_021151.1 3801316 3802995 D putative inner membrane protein 3801316..3802995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904749.1 CDS STU288_18310 NC_021151.1 3803077 3803184 R Small toxic polypeptide ldrD complement(3803077..3803184) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904750.1 CDS STU288_18315 NC_021151.1 3803569 3803709 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; Cystathionine gamma-lyase Gamma-cystathionase 3803569..3803709 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904751.1 CDS STU288_18320 NC_021151.1 3803827 3805125 D COG0814 Amino acid permeases; Serine transporter 3803827..3805125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904754.1 CDS STU288_18335 NC_021151.1 3807230 3808132 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter complement(3807230..3808132) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904755.1 CDS STU288_18340 NC_021151.1 3808142 3809161 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter permease DppB complement(3808142..3809161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904756.1 CDS STU288_18345 NC_021151.1 3809318 3810925 R COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide ABC transporter periplasmic substrate-binding protein DppA complement(3809318..3810925) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904757.1 CDS STU288_18350 NC_021151.1 3811481 3812806 R COG2233 Xanthine/uracil permeases; xanthine permease complement(3811481..3812806) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904758.1 CDS STU288_18355 NC_021151.1 3812864 3813988 R hypothetical protein complement(3812864..3813988) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904759.1 CDS STU288_18360 NC_021151.1 3814138 3815145 D COG1609 Transcriptional regulators; putative regulatory protein 3814138..3815145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904760.1 CDS STU288_18365 NC_021151.1 3815472 3817163 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; phosphoethanolamine transferase complement(3815472..3817163) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904761.1 CDS STU288_18370 NC_021151.1 3817381 3817908 R COG3539 P pilus assembly protein, pilin FimA; long polar fimbrial protein LpfE complement(3817381..3817908) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904762.1 CDS STU288_18375 NC_021151.1 3817914 3818993 R long polar fimbrial protein LpfD complement(3817914..3818993) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904763.1 CDS STU288_18380 NC_021151.1 3819011 3821539 R COG3188 P pilus assembly protein, porin PapC; long polar fimbrial outer membrane usher protein LpfC complement(3819011..3821539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904764.1 CDS STU288_18385 NC_021151.1 3821562 3822260 R COG3121 P pilus assembly protein, chaperone PapD; long polar fimbrial chaperone LpfB complement(3821562..3822260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904765.1 CDS STU288_18390 NC_021151.1 3822345 3822869 R COG3539 P pilus assembly protein, pilin FimA; long polar fimbrial protein LpfA complement(3822345..3822869) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904766.1 CDS STU288_18395 NC_021151.1 3823387 3824091 R Lipase complement(3823387..3824091) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904767.1 CDS STU288_18400 NC_021151.1 3824248 3824829 D COG2818 3-methyladenine DNA glycosylase; 3-methyl-adenine DNA glycosylase I 3824248..3824829 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904768.1 CDS STU288_18405 NC_021151.1 3824807 3825247 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 3824807..3825247 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904769.1 CDS bisC NC_021151.1 3825216 3827549 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase complement(3825216..3827549) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904770.1 CDS STU288_18415 NC_021151.1 3827702 3828364 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 3827702..3828364 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904771.1 CDS STU288_18420 NC_021151.1 3828583 3829557 D COG1052 Lactate dehydrogenase and related dehydrogenases; bifunctional glyoxylate/hydroxypyruvate reductase B 3828583..3829557 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904772.1 CDS STU288_18425 NC_021151.1 3829607 3830317 R hypothetical protein complement(3829607..3830317) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904773.1 CDS STU288_18430 NC_021151.1 3830756 3831046 D COG2944 Predicted transcriptional regulator; transcriptional regulator 3830756..3831046 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904774.1 CDS STU288_18435 NC_021151.1 3831335 3831547 D COG1278 Cold shock proteins; cold shock protein 3831335..3831547 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904775.1 CDS STU288_18440 NC_021151.1 3831721 3832260 D Putative periplasmic or exported protein 3831721..3832260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904776.1 CDS STU288_18445 NC_021151.1 3832632 3833117 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(3832632..3833117) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904777.1 CDS STU288_18450 NC_021151.1 3833105 3833371 R COG4453 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3833105..3833371) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904778.1 CDS STU288_18455 NC_021151.1 3833570 3834037 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(3833570..3834037) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904779.1 CDS STU288_18460 NC_021151.1 3834209 3834400 R COG2801 Transposase and inactivated derivatives; transposase complement(3834209..3834400) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904780.1 CDS glyS NC_021151.1 3834666 3836735 R COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA ligase subunit beta complement(3834666..3836735) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904781.1 CDS glyQ NC_021151.1 3836745 3837656 R COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA ligase subunit alpha complement(3836745..3837656) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904782.1 CDS STU288_18475 NC_021151.1 3837795 3838097 R YsaB-like lipoprotein complement(3837795..3838097) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904783.1 CDS STU288_18480 NC_021151.1 3838263 3839258 D COG3274 Uncharacterized protein conserved in bacteria; O-acetyltransferase 3838263..3839258 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904784.1 CDS STU288_18485 NC_021151.1 3839281 3839634 R Inner membrane protein yiaA complement(3839281..3839634) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904785.1 CDS STU288_18490 NC_021151.1 3839809 3841263 R COG1070 Sugar (pentulose and hexulose) kinases; xylulokinase complement(3839809..3841263) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904786.1 CDS STU288_18495 NC_021151.1 3841363 3842685 R COG2115 Xylose isomerase; xylose isomerase complement(3841363..3842685) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904787.1 CDS STU288_18500 NC_021151.1 3843048 3844226 D COG1609 Transcriptional regulators; xylose operon transcriptional activator 3843048..3844226 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904788.1 CDS STU288_18505 NC_021151.1 3844287 3845111 R COG2992 Uncharacterized FlgJ-related protein; hypothetical protein complement(3844287..3845111) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904789.1 CDS malS NC_021151.1 3845427 3847454 D COG0366 Glycosidases; alpha-amylase 3845427..3847454 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904790.1 CDS avtA NC_021151.1 3847628 3848878 D COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; valine--pyruvate transaminase 3847628..3848878 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904791.1 CDS STU288_18520 NC_021151.1 3848915 3849388 R COG1142 Fe-S-cluster-containing hydrogenase components 2; electron-transport protein complement(3848915..3849388) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904792.1 CDS STU288_18525 NC_021151.1 3849505 3850305 R COG1414 Transcriptional regulator; transcriptional regulator complement(3849505..3850305) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904793.1 CDS STU288_18530 NC_021151.1 3850535 3851533 D COG2055 Malate/L-lactate dehydrogenases; 2,3-diketo-L-gulonate reductase 3850535..3851533 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904794.1 CDS STU288_18535 NC_021151.1 3851545 3852009 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 3851545..3852009 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904795.1 CDS STU288_18540 NC_021151.1 3852033 3852965 D hypothetical protein 3852033..3852965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904796.1 CDS STU288_18545 NC_021151.1 3853104 3853577 D COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3853104..3853577 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904797.1 CDS STU288_18550 NC_021151.1 3853580 3854857 D COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; L-dehydroascorbate transporter large permease subunit 3853580..3854857 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904798.1 CDS STU288_18555 NC_021151.1 3854869 3855855 D COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein 3854869..3855855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904799.1 CDS STU288_18560 NC_021151.1 3855859 3857355 D COG1070 Sugar (pentulose and hexulose) kinases; L-xylulose/3-keto-L-gulonate kinase 3855859..3857355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904800.1 CDS sgbH NC_021151.1 3857352 3858014 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 3857352..3858014 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904801.1 CDS STU288_18570 NC_021151.1 3858007 3858867 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 3858007..3858867 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904802.1 CDS sgbE NC_021151.1 3858861 3859556 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 3858861..3859556 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904803.1 CDS STU288_18580 NC_021151.1 3859717 3860532 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator complement(3859717..3860532) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904804.1 CDS STU288_18585 NC_021151.1 3860796 3862751 D COG3533 Uncharacterized protein conserved in bacteria; hypothetical protein 3860796..3862751 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904805.1 CDS STU288_18590 NC_021151.1 3862869 3864407 R COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase B complement(3862869..3864407) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904806.1 CDS STU288_18595 NC_021151.1 3864576 3865457 D COG1940 Transcriptional regulator/sugar kinase; sugar kinase 3864576..3865457 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904807.1 CDS STU288_18600 NC_021151.1 3865742 3867592 R COG3276 Selenocysteine-specific translation elongation factor; selenocysteinyl-tRNA-specific translation factor complement(3865742..3867592) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904808.1 CDS STU288_18605 NC_021151.1 3867589 3868980 R COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase complement(3867589..3868980) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904809.1 CDS STU288_18610 NC_021151.1 3869079 3869687 R COG0625 Glutathione S-transferase; glutathione S-transferase complement(3869079..3869687) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904810.1 CDS STU288_18615 NC_021151.1 3870163 3872079 D COG2213 Phosphotransferase system, mannitol-specific IIBC component; PTS system mannitol-specific transporter subunit IICBA 3870163..3872079 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904811.1 CDS STU288_18620 NC_021151.1 3872300 3873448 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 3872300..3873448 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904812.1 CDS mtlR NC_021151.1 3873445 3874035 D COG3722 Transcriptional regulator; mannitol repressor protein 3873445..3874035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904813.1 CDS STU288_18630 NC_021151.1 3874045 3874254 R hypothetical protein complement(3874045..3874254) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904814.1 CDS STU288_18635 NC_021151.1 3874545 3874907 D COG0323 DNA mismatch repair enzyme (predicted ATPase); hypothetical protein 3874545..3874907 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904815.1 CDS STU288_18640 NC_021151.1 3875397 3876080 D hypothetical protein 3875397..3876080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904816.1 CDS STU288_18655 NC_021151.1 3880808 3882463 D COG1620 L-lactate permease; L-lactate permease 3880808..3882463 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904817.1 CDS STU288_18660 NC_021151.1 3882460 3883236 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor LldR 3882460..3883236 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904818.1 CDS lldD NC_021151.1 3883233 3884423 D COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate dehydrogenase 3883233..3884423 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904819.1 CDS STU288_18670 NC_021151.1 3884487 3884960 D COG0219 Predicted rRNA methylase (SpoU class); rRNA methylase 3884487..3884960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904820.1 CDS STU288_18675 NC_021151.1 3885028 3886083 R COG1609 Transcriptional regulators; lacI family transcriptional regulator regulator complement(3885028..3886083) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904821.1 CDS STU288_18680 NC_021151.1 3886351 3887547 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; racemase 3886351..3887547 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904822.1 CDS STU288_18685 NC_021151.1 3887621 3888931 D COG0477 Permeases of the major facilitator superfamily; putative glucarate transporter D-glucarate permease 3887621..3888931 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904823.1 CDS cysE NC_021151.1 3889014 3889835 R COG1045 Serine acetyltransferase; serine acetyltransferase complement(3889014..3889835) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904824.1 CDS gpsA NC_021151.1 3889913 3890932 R COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3889913..3890932) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904825.1 CDS STU288_18700 NC_021151.1 3890932 3891399 R COG1952 Preprotein translocase subunit SecB; preprotein translocase subunit SecB complement(3890932..3891399) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904826.1 CDS STU288_18705 NC_021151.1 3891443 3891694 R COG0695 Glutaredoxin and related proteins; glutaredoxin 3 complement(3891443..3891694) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904827.1 CDS STU288_18710 NC_021151.1 3891781 3892212 R COG0607 Rhodanese-related sulfurtransferase; UPF0176 protein complement(3891781..3892212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904828.1 CDS STU288_18715 NC_021151.1 3892460 3894004 D COG0696 Phosphoglyceromutase; phosphoglyceromutase 3892460..3894004 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904829.1 CDS STU288_18720 NC_021151.1 3894014 3895297 D COG4942 Membrane-bound metallopeptidase; AmiB activator 3894014..3895297 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904830.1 CDS STU288_18725 NC_021151.1 3895301 3896263 D COG2861 Uncharacterized protein conserved in bacteria; divergent polysaccharide deacetylase 3895301..3896263 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904831.1 CDS STU288_18730 NC_021151.1 3896250 3897284 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(3896250..3897284) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904832.1 CDS tdh NC_021151.1 3897778 3898803 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-threonine 3-dehydrogenase complement(3897778..3898803) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904833.1 CDS STU288_18740 NC_021151.1 3898813 3900009 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 2-amino-3-ketobutyrate coenzyme A ligase complement(3898813..3900009) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904834.1 CDS rfaD NC_021151.1 3900212 3901144 D COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-mannoheptose-6-epimerase 3900212..3901144 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904835.1 CDS STU288_18750 NC_021151.1 3901147 3902193 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyltransferase II 3901147..3902193 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904836.1 CDS STU288_18755 NC_021151.1 3902193 3903146 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyl transferase I 3902193..3903146 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904837.1 CDS STU288_18760 NC_021151.1 3903186 3904400 D O-antigen ligase RfaL 3903186..3904400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904838.1 CDS STU288_18765 NC_021151.1 3904457 3905602 R COG0438 Glycosyltransferase; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3904457..3905602) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904839.1 CDS STU288_18770 NC_021151.1 3905703 3906512 R lipopolysaccharide core biosynthesis protein complement(3905703..3906512) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904840.1 CDS STU288_18775 NC_021151.1 3906662 3907360 R COG1527 Archaeal/vacuolar-type H+-ATPase subunit C; lipopolysaccharide core heptose(II) kinase RfaY complement(3906662..3907360) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904841.1 CDS STU288_18780 NC_021151.1 3907383 3908393 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,2-glucosyltransferase complement(3907383..3908393) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904842.1 CDS STU288_18785 NC_021151.1 3908411 3909424 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,3-galactosyltransferase complement(3908411..3909424) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904843.1 CDS STU288_18790 NC_021151.1 3909430 3910509 R COG0438 Glycosyltransferase; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3909430..3910509) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904844.1 CDS STU288_18795 NC_021151.1 3910579 3910788 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative inner membrane protein complement(3910579..3910788) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904845.1 CDS STU288_18800 NC_021151.1 3910844 3911641 R lipopolysaccharide core heptose(I) kinase RfaP complement(3910844..3911641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904846.1 CDS STU288_18805 NC_021151.1 3911634 3912758 R COG0438 Glycosyltransferase; glucosyltransferase I RfaG complement(3911634..3912758) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904847.1 CDS STU288_18810 NC_021151.1 3912755 3913789 R COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide core heptosyltransferase RfaQ complement(3912755..3913789) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904848.1 CDS STU288_18815 NC_021151.1 3914234 3915511 D COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 3914234..3915511 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904849.1 CDS coaD NC_021151.1 3915520 3915999 D COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 3915520..3915999 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904850.1 CDS STU288_18825 NC_021151.1 3916027 3916836 R COG0266 Formamidopyrimidine-DNA glycosylase; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase complement(3916027..3916836) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904851.1 CDS STU288_18830 NC_021151.1 3916934 3917101 R COG0267 Ribosomal protein L33; 50S ribosomal protein L33 complement(3916934..3917101) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904852.1 CDS rpmB NC_021151.1 3917122 3917358 R COG0227 Ribosomal protein L28; 50S ribosomal protein L28 complement(3917122..3917358) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904853.1 CDS STU288_18840 NC_021151.1 3917576 3918241 R COG2003 DNA repair proteins; hypothetical protein complement(3917576..3918241) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904854.1 CDS STU288_18845 NC_021151.1 3918417 3919637 D COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3918417..3919637 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904855.1 CDS dut NC_021151.1 3919618 3920073 D COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 3919618..3920073 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904856.1 CDS slmA NC_021151.1 3920181 3920777 D COG1309 Transcriptional regulator; division inhibitor protein 3920181..3920777 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904857.1 CDS pyrE NC_021151.1 3920855 3921496 R COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase complement(3920855..3921496) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904858.1 CDS rph NC_021151.1 3921575 3922291 R COG0689 RNase PH; ribonuclease PH complement(3921575..3922291) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904859.1 CDS STU288_18870 NC_021151.1 3922417 3923280 D COG1561 Uncharacterized stress-induced protein; hypothetical protein 3922417..3923280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904860.1 CDS STU288_18875 NC_021151.1 3923330 3924232 R COG0583 Transcriptional regulator; regulatory protein complement(3923330..3924232) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904861.1 CDS STU288_18880 NC_021151.1 3924306 3925187 D COG0491 Zn-dependent hydrolases, including glyoxylases; putative Zn-dependent hydrolase 3924306..3925187 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904862.1 CDS STU288_18885 NC_021151.1 3925132 3925314 D hypothetical protein 3925132..3925314 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904863.1 CDS STU288_18890 NC_021151.1 3925438 3926055 D COG2860 Predicted membrane protein; UPF0126 membrane protein 3925438..3926055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904864.1 CDS ligB NC_021151.1 3926052 3927737 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigB complement(3926052..3927737) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904865.1 CDS gmk NC_021151.1 3927994 3928617 D COG0194 Guanylate kinase; guanylate kinase 3927994..3928617 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904866.1 CDS STU288_18905 NC_021151.1 3928672 3928947 D COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 3928672..3928947 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904867.1 CDS STU288_18910 NC_021151.1 3928966 3931077 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3928966..3931077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904868.1 CDS STU288_18915 NC_021151.1 3931082 3931771 D COG0566 rRNA methylases; tRNA guanosine-2'-O-methyltransferase 3931082..3931771 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904869.1 CDS STU288_18920 NC_021151.1 3931777 3933858 D COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 3931777..3933858 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904870.1 CDS STU288_18925 NC_021151.1 3933861 3934712 R putative cytoplasmic protein complement(3933861..3934712) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904871.1 CDS STU288_18930 NC_021151.1 3934715 3935920 R COG0786 Na+/glutamate symporter; sodium/glutamate symport carrier protein GltS complement(3934715..3935920) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904872.1 CDS STU288_18935 NC_021151.1 3936148 3937539 D COG2233 Xanthine/uracil permeases; xanthine permease XanP 3936148..3937539 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904873.1 CDS STU288_18940 NC_021151.1 3937660 3939369 D putative inner membrane protein 3937660..3939369 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904874.1 CDS STU288_18945 NC_021151.1 3939472 3941790 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase complement(3939472..3941790) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904875.1 CDS STU288_18950 NC_021151.1 3941802 3943184 R COG2211 Na+/melibiose symporter and related transporters; transporter complement(3941802..3943184) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904876.1 CDS STU288_18955 NC_021151.1 3943883 3944227 R hypothetical protein complement(3943883..3944227) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904877.1 CDS STU288_18960 NC_021151.1 3944905 3946095 D COG3950 Predicted ATP-binding protein involved in virulence; ATP-binding protein 3944905..3946095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904878.1 CDS STU288_18965 NC_021151.1 3946095 3946442 D putative cytoplasmic protein 3946095..3946442 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904879.1 CDS STU288_18970 NC_021151.1 3946629 3947666 D COG3943 Virulence protein; Virulence protein RhuM family 3946629..3947666 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904880.1 CDS STU288_18975 NC_021151.1 3947778 3947951 R COG2963 Transposase and inactivated derivatives; putative transposase ykgN complement(3947778..3947951) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904881.1 CDS STU288_18980 NC_021151.1 3948965 3949582 D hypothetical protein 3948965..3949582 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904882.1 CDS STU288_18985 NC_021151.1 3949657 3952524 D COG3468 Type V secretory pathway, adhesin AidA; autotransport protein MisL 3949657..3952524 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904883.1 CDS STU288_18990 NC_021151.1 3952619 3953083 R hypothetical protein complement(3952619..3953083) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904884.1 CDS STU288_18995 NC_021151.1 3953094 3953858 R COG3710 DNA-binding winged-HTH domains; putative transcriptional regulator complement(3953094..3953858) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904885.1 CDS STU288_19000 NC_021151.1 3954735 3955415 D COG1335 Amidases related to nicotinamidase; Nicotinamidase family protein YcaC 3954735..3955415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904886.1 CDS STU288_19005 NC_021151.1 3955644 3956123 R hypothetical protein complement(3955644..3956123) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904887.1 CDS STU288_19010 NC_021151.1 3956324 3956416 R hypothetical protein complement(3956324..3956416) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904888.1 CDS STU288_19015 NC_021151.1 3956438 3959164 R COG0474 Cation transport ATPase; magnesium-transporting ATPase complement(3956438..3959164) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904889.1 CDS STU288_19020 NC_021151.1 3959384 3960079 R COG1285 Uncharacterized membrane protein; magnesium transport protein MgtC complement(3959384..3960079) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904890.1 CDS STU288_19025 NC_021151.1 3960588 3961490 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative permease 3960588..3961490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904891.1 CDS STU288_19030 NC_021151.1 3961533 3962474 R hypothetical protein complement(3961533..3962474) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904892.1 CDS STU288_19035 NC_021151.1 3962710 3963453 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein complement(3962710..3963453) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904893.1 CDS STU288_19040 NC_021151.1 3963440 3964549 R COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; L-seryl-tRNA(Sec) selenium transferase-like protein complement(3963440..3964549) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904894.1 CDS STU288_19045 NC_021151.1 3964553 3965410 R COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; Mannose permease IID component PTS system complement(3964553..3965410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904895.1 CDS STU288_19050 NC_021151.1 3965410 3966159 R COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; N-acetylgalactosamine permease IIC component 1 PTS system N-acetylgalactosamine-specific EIIC component 1 complement(3965410..3966159) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904896.1 CDS STU288_19055 NC_021151.1 3966305 3966790 R COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system transporter protein complement(3966305..3966790) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904897.1 CDS STU288_19060 NC_021151.1 3966801 3967226 R COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system fructose IIA component complement(3966801..3967226) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904898.1 CDS STU288_19065 NC_021151.1 3967445 3970243 R COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; sigma-54 dependent transcriptional regulator complement(3967445..3970243) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904899.1 CDS STU288_19070 NC_021151.1 3970440 3970733 D Putative secreted protein 3970440..3970733 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904900.1 CDS STU288_19075 NC_021151.1 3970839 3972221 D COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; Beta-glucosidase 3970839..3972221 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904901.1 CDS nepI NC_021151.1 3972281 3973474 R COG2814 Arabinose efflux permease; ribonucleoside transporter complement(3972281..3973474) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904902.1 CDS STU288_19085 NC_021151.1 3973690 3974049 D COG4737 Uncharacterized protein conserved in bacteria; hypothetical protein 3973690..3974049 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904903.1 CDS STU288_19090 NC_021151.1 3974033 3974356 D COG2944 Predicted transcriptional regulator; DNA-binding protein 3974033..3974356 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904904.1 CDS STU288_19095 NC_021151.1 3974447 3974716 R COG1925 Phosphotransferase system, HPr-related proteins; Phosphotransferase system HPr enzyme in cluster with fructose-bisphosphate aldolase complement(3974447..3974716) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904905.1 CDS gatY NC_021151.1 3974726 3975586 R COG0191 Fructose/tagatose bisphosphate aldolase; fructose-1,6-bisphosphate aldolase complement(3974726..3975586) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904906.1 CDS STU288_19105 NC_021151.1 3975649 3977133 R COG1070 Sugar (pentulose and hexulose) kinases; Carbohydrate kinase in cluster with fructose-bisphosphate aldolase complement(3975649..3977133) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904907.1 CDS STU288_19110 NC_021151.1 3977126 3978484 R COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system, galactitol-specific IIC component complement(3977126..3978484) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904908.1 CDS STU288_19115 NC_021151.1 3978560 3978847 R COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system transporter subunit IIB complement(3978560..3978847) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904909.1 CDS STU288_19120 NC_021151.1 3978844 3979317 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); phosphoenolpyruvate-dependent sugar phosphotransferase system, eiia 2 complement(3978844..3979317) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904910.1 CDS STU288_19125 NC_021151.1 3979335 3980078 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(3979335..3980078) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904911.1 CDS STU288_19130 NC_021151.1 3980431 3980883 R putative inner membrane protein complement(3980431..3980883) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904912.1 CDS uhpT NC_021151.1 3981076 3982467 R COG2271 Sugar phosphate permease; sugar phosphate antiporter complement(3981076..3982467) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904913.1 CDS STU288_19140 NC_021151.1 3982610 3983938 R COG2271 Sugar phosphate permease; regulatory protein UhpC complement(3982610..3983938) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904914.1 CDS STU288_19145 NC_021151.1 3983948 3985450 R COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; sensory histidine kinase UhpB complement(3983948..3985450) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904915.1 CDS STU288_19150 NC_021151.1 3985450 3986040 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator UhpA complement(3985450..3986040) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904916.1 CDS STU288_19155 NC_021151.1 3986115 3987128 R hypothetical protein complement(3986115..3987128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904917.1 CDS STU288_19160 NC_021151.1 3987140 3988456 R COG0738 Fucose permease; putative glucose/galactose transporter complement(3987140..3988456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904918.1 CDS STU288_19165 NC_021151.1 3988487 3989407 R COG0524 Sugar kinases, ribokinase family; putative carbohydrate kinase complement(3988487..3989407) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904919.1 CDS STU288_19170 NC_021151.1 3989732 3990517 D COG1349 Transcriptional regulators of sugar metabolism; Deoxyribose operon repressor, DeoR family protein 3989732..3990517 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904920.1 CDS STU288_19175 NC_021151.1 3990519 3990809 R COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 1 regulatory subunit complement(3990519..3990809) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904921.1 CDS STU288_19180 NC_021151.1 3990813 3992501 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase catalytic subunit complement(3990813..3992501) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904922.1 CDS STU288_19185 NC_021151.1 3993340 3993429 D toxic peptide TisB 3993340..3993429 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904923.1 CDS STU288_19190 NC_021151.1 3993549 3994382 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; integral membrane protein 3993549..3994382 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904924.1 CDS emrD NC_021151.1 3994585 3995769 D COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein D 3994585..3995769 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904925.1 CDS STU288_19200 NC_021151.1 3995696 3996781 R hypothetical protein complement(3995696..3996781) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904926.1 CDS STU288_19205 NC_021151.1 3996845 3997768 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator DsdC complement(3996845..3997768) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904927.1 CDS STU288_19210 NC_021151.1 3997994 3999331 D COG2610 H+/gluconate symporter and related permeases; permease DsdX 3997994..3999331 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904928.1 CDS STU288_19215 NC_021151.1 3999349 4000671 D COG3048 D-serine dehydratase; D-serine dehydratase 3999349..4000671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904929.1 CDS STU288_19220 NC_021151.1 4000753 4001283 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); hypothetical protein complement(4000753..4001283) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904930.1 CDS STU288_19225 NC_021151.1 4001280 4001642 R Inner membrane protein yidG complement(4001280..4001642) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904931.1 CDS STU288_19230 NC_021151.1 4001632 4001979 R COG2149 Predicted membrane protein; inner membrane protein complement(4001632..4001979) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904932.1 CDS STU288_19235 NC_021151.1 4002115 4002261 D hypothetical protein 4002115..4002261 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904933.1 CDS STU288_19240 NC_021151.1 4002280 4002426 D hypothetical protein 4002280..4002426 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904934.1 CDS STU288_19245 NC_021151.1 4002423 4004084 R COG2985 Predicted permease; transporter complement(4002423..4004084) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904935.1 CDS STU288_19250 NC_021151.1 4004274 4004702 R COG0071 Molecular chaperone (small heat shock protein); heat shock chaperone IbpB complement(4004274..4004702) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904936.1 CDS STU288_19255 NC_021151.1 4004812 4005225 R COG0071 Molecular chaperone (small heat shock protein); heat shock protein IbpA complement(4004812..4005225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904937.1 CDS STU288_19260 NC_021151.1 4005535 4005867 D COG5645 Predicted periplasmic lipoprotein; hypothetical protein 4005535..4005867 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904938.1 CDS STU288_19265 NC_021151.1 4005869 4007095 R COG2319 FOG: WD40 repeat; ATP/GTP-binding protein complement(4005869..4007095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904939.1 CDS STU288_19270 NC_021151.1 4007217 4008260 R COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH complement(4007217..4008260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904940.1 CDS STU288_19275 NC_021151.1 4008257 4008814 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE complement(4008257..4008814) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904941.1 CDS STU288_19280 NC_021151.1 4008811 4010742 R COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF complement(4008811..4010742) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904942.1 CDS STU288_19285 NC_021151.1 4010739 4011218 R COG2332 Cytochrome c-type biogenesis protein CcmE; Cytochrome c-type biogenesis protein CcmE, heme chaperone complement(4010739..4011218) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904943.1 CDS STU288_19290 NC_021151.1 4011215 4011427 R COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD complement(4011215..4011427) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904944.1 CDS STU288_19295 NC_021151.1 4011424 4012161 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmC complement(4011424..4012161) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904945.1 CDS STU288_19300 NC_021151.1 4012213 4012872 R COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmB complement(4012213..4012872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904946.1 CDS STU288_19305 NC_021151.1 4012869 4013486 R COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA complement(4012869..4013486) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904947.1 CDS STU288_19310 NC_021151.1 4013492 4014892 R COG1858 Cytochrome c peroxidase; cytochrome C peroxidase complement(4013492..4014892) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904948.1 CDS torD NC_021151.1 4015082 4015714 R COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone protein TorD complement(4015082..4015714) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904949.1 CDS STU288_19320 NC_021151.1 4015707 4018259 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; trimethylamine N-oxide reductase I catalytic subunit complement(4015707..4018259) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904950.1 CDS STU288_19325 NC_021151.1 4018249 4019433 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; trimethylamine N-oxide reductase cytochrome c-type subunit complement(4018249..4019433) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904951.1 CDS STU288_19330 NC_021151.1 4019563 4020255 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator TorR 4019563..4020255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904952.1 CDS STU288_19335 NC_021151.1 4020228 4021268 R COG1879 ABC-type sugar transport system, periplasmic component; TMAO reductase system periplasmic protein TorT complement(4020228..4021268) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904953.1 CDS STU288_19340 NC_021151.1 4021348 4024083 D COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase TorS 4021348..4024083 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904954.1 CDS STU288_19345 NC_021151.1 4024109 4025401 R COG0477 Permeases of the major facilitator superfamily; D-galactonate transporter DgoT complement(4024109..4025401) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904955.1 CDS STU288_19350 NC_021151.1 4025531 4026679 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; galactonate dehydratase complement(4025531..4026679) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904956.1 CDS STU288_19355 NC_021151.1 4026676 4027293 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4026676..4027293) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904957.1 CDS STU288_19360 NC_021151.1 4027277 4028155 R COG3734 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase complement(4027277..4028155) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904958.1 CDS STU288_19365 NC_021151.1 4028152 4028841 R COG2186 Transcriptional regulators; Transcriptional regulator nanR complement(4028152..4028841) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904959.1 CDS STU288_19370 NC_021151.1 4029102 4029947 R COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphate phosphatase complement(4029102..4029947) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904960.1 CDS STU288_19375 NC_021151.1 4030253 4031515 D COG0477 Permeases of the major facilitator superfamily; putative permease 4030253..4031515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904961.1 CDS STU288_19380 NC_021151.1 4031529 4032722 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; racemase 4031529..4032722 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904962.1 CDS STU288_19385 NC_021151.1 4032837 4033733 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 4032837..4033733 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904963.1 CDS gyrB NC_021151.1 4033752 4036166 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B complement(4033752..4036166) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904964.1 CDS recF NC_021151.1 4036195 4037268 R COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein F complement(4036195..4037268) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904965.1 CDS STU288_19400 NC_021151.1 4037416 4038516 R COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta complement(4037416..4038516) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904966.1 CDS dnaA NC_021151.1 4038521 4039921 R COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein complement(4038521..4039921) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904967.1 CDS STU288_19410 NC_021151.1 4040283 4040441 D hypothetical protein 4040283..4040441 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904968.1 CDS STU288_19415 NC_021151.1 4040582 4040722 D COG0230 Ribosomal protein L34; ribosomal protein L34 4040582..4040722 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904969.1 CDS rnpA NC_021151.1 4040739 4041098 D COG0594 RNase P protein component; ribonuclease P 4040739..4041098 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904970.1 CDS STU288_19425 NC_021151.1 4041062 4041319 D COG0759 Uncharacterized conserved protein; hypothetical protein 4041062..4041319 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904971.1 CDS STU288_19430 NC_021151.1 4041322 4042968 D COG0706 Preprotein translocase subunit YidC; membrane protein insertase 4041322..4042968 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904972.1 CDS trmE NC_021151.1 4043110 4044474 D COG0486 Predicted GTPase; tRNA modification GTPase TrmE 4043110..4044474 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904973.1 CDS STU288_19440 NC_021151.1 4044730 4045224 D COG0582 Integrase; Integrase 4044730..4045224 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904974.1 CDS STU288_19445 NC_021151.1 4045240 4045950 D COG0582 Integrase; putative recombinase 4045240..4045950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904975.1 CDS STU288_19450 NC_021151.1 4045985 4046212 R hypothetical protein complement(4045985..4046212) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904976.1 CDS STU288_19455 NC_021151.1 4046275 4047237 D hypothetical protein 4046275..4047237 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904977.1 CDS STU288_19460 NC_021151.1 4047237 4048172 D COG3344 Retron-type reverse transcriptase; reverse transcriptase 4047237..4048172 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904978.1 CDS STU288_19465 NC_021151.1 4048974 4050161 D COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtL 4048974..4050161 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904979.1 CDS STU288_19470 NC_021151.1 4050130 4051089 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator YidZ 4050130..4051089 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904980.1 CDS STU288_19475 NC_021151.1 4051247 4052002 D COG2091 Phosphopantetheinyl transferase; hypothetical protein 4051247..4052002 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904981.1 CDS STU288_19480 NC_021151.1 4052020 4052586 D COG0431 Predicted flavoprotein; hypothetical protein 4052020..4052586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904982.1 CDS STU288_19485 NC_021151.1 4052631 4053968 R COG2252 Permeases; adenine permease PurP complement(4052631..4053968) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904983.1 CDS STU288_19490 NC_021151.1 4054137 4054802 D COG0637 Predicted phosphatase/phosphohexomutase; 6-phosphogluconate phosphatase 4054137..4054802 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904984.1 CDS STU288_19495 NC_021151.1 4054897 4055622 R COG0704 Phosphate uptake regulator; transcriptional regulator PhoU complement(4054897..4055622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904985.1 CDS pstB NC_021151.1 4055637 4056410 R COG1117 ABC-type phosphate transport system, ATPase component; phosphate transporter ATP-binding protein complement(4055637..4056410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904986.1 CDS pstA NC_021151.1 4056497 4057387 R COG0581 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PtsA complement(4056497..4057387) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904987.1 CDS pstC NC_021151.1 4057387 4058346 R COG0573 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PstC complement(4057387..4058346) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904988.1 CDS STU288_19515 NC_021151.1 4058482 4059522 R COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter periplasmic substrate-binding protein PstS complement(4058482..4059522) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904989.1 CDS STU288_19520 NC_021151.1 4059689 4061062 R COG1445 Phosphotransferase system fructose-specific component IIB; PTS system, fructose-specific IIBC component complement(4059689..4061062) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904990.1 CDS STU288_19525 NC_021151.1 4061111 4061929 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(4061111..4061929) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904991.1 CDS STU288_19530 NC_021151.1 4062024 4063781 D COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4062024..4063781 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904992.1 CDS STU288_19535 NC_021151.1 4063932 4065761 R COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase complement(4063932..4065761) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904993.1 CDS glmU NC_021151.1 4065950 4067320 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4065950..4067320) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904994.1 CDS STU288_19545 NC_021151.1 4067640 4068338 R COG0670 Integral membrane protein, interacts with FtsH; permease complement(4067640..4068338) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904995.1 CDS atpC NC_021151.1 4068568 4068987 R COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon complement(4068568..4068987) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904996.1 CDS STU288_19555 NC_021151.1 4069008 4070390 R COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta complement(4069008..4070390) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904997.1 CDS STU288_19560 NC_021151.1 4070417 4071280 R COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma complement(4070417..4071280) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904998.1 CDS STU288_19565 NC_021151.1 4071331 4072872 R COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha complement(4071331..4072872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007904999.1 CDS STU288_19570 NC_021151.1 4072885 4073418 R COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta complement(4072885..4073418) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905000.1 CDS STU288_19575 NC_021151.1 4073433 4073903 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B complement(4073433..4073903) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905001.1 CDS STU288_19580 NC_021151.1 4073963 4074202 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; ATP synthase, F0 subunit c complement(4073963..4074202) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905002.1 CDS STU288_19585 NC_021151.1 4074249 4075064 R COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A complement(4074249..4075064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905003.1 CDS STU288_19590 NC_021151.1 4075073 4075453 R COG3312 F0F1-type ATP synthase, subunit I; F0F1 ATP synthase subunit I complement(4075073..4075453) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905004.1 CDS gidB NC_021151.1 4076069 4076692 R COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB complement(4076069..4076692) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905005.1 CDS STU288_19600 NC_021151.1 4076795 4078684 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(4076795..4078684) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905006.1 CDS STU288_19605 NC_021151.1 4079063 4079506 R COG0716 Flavodoxins; FMN-binding protein MioC complement(4079063..4079506) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905007.1 CDS STU288_19610 NC_021151.1 4079596 4080054 R COG1522 Transcriptional regulators; DNA-binding transcriptional regulator AsnC complement(4079596..4080054) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905008.1 CDS STU288_19615 NC_021151.1 4080205 4081197 D COG2502 Asparagine synthetase A; asparagine synthetase AsnA 4080205..4081197 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905009.1 CDS STU288_19620 NC_021151.1 4081202 4082653 R COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein complement(4081202..4082653) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905010.1 CDS STU288_19625 NC_021151.1 4082647 4084143 R COG0714 MoxR-like ATPases; regulatory ATPase RavA complement(4082647..4084143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905011.1 CDS trkD NC_021151.1 4084491 4086359 D COG3158 K+ transporter; potassium transport protein Kup 4084491..4086359 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905012.1 CDS STU288_19635 NC_021151.1 4086556 4086975 D COG1869 ABC-type ribose transport system, auxiliary component; D-ribose pyranase 4086556..4086975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905013.1 CDS STU288_19640 NC_021151.1 4086983 4088488 D COG1129 ABC-type sugar transport system, ATPase component; D-ribose transporter ATP binding protein 4086983..4088488 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905014.1 CDS rbsC NC_021151.1 4088494 4089459 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ribose ABC transporter permease protein 4088494..4089459 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905015.1 CDS STU288_19650 NC_021151.1 4089484 4090374 D COG1879 ABC-type sugar transport system, periplasmic component; D-ribose transporter subunit RbsB 4089484..4090374 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905016.1 CDS STU288_19655 NC_021151.1 4090508 4091437 D COG0524 Sugar kinases, ribokinase family; ribokinase 4090508..4091437 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905017.1 CDS STU288_19660 NC_021151.1 4091441 4092439 D COG1609 Transcriptional regulators; transcriptional repressor RbsR 4091441..4092439 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905018.1 CDS STU288_19665 NC_021151.1 4092405 4093832 R COG0477 Permeases of the major facilitator superfamily; putative multidrug resistance protein mdtD complement(4092405..4093832) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905019.1 CDS STU288_19670 NC_021151.1 4093844 4094548 R COG2186 Transcriptional regulators; GntR family transcriptional regulator complement(4093844..4094548) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905020.1 CDS STU288_19675 NC_021151.1 4100442 4101278 R COG0583 Transcriptional regulator; transcriptional regulator HdfR complement(4100442..4101278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905021.1 CDS STU288_19680 NC_021151.1 4101397 4101735 D COG3085 Uncharacterized protein conserved in bacteria; hypothetical protein 4101397..4101735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905022.1 CDS STU288_19685 NC_021151.1 4101760 4103280 R COG0606 Predicted ATPase with chaperone activity; ATP-dependent protease complement(4101760..4103280) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905023.1 CDS STU288_19690 NC_021151.1 4103445 4103552 D hypothetical protein 4103445..4103552 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905024.1 CDS STU288_19695 NC_021151.1 4103870 4105516 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 2 catalytic subunit 4103870..4105516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905025.1 CDS ilvM NC_021151.1 4105513 4105776 D COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit; acetolactate synthase 2 regulatory subunit 4105513..4105776 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905026.1 CDS STU288_19705 NC_021151.1 4105794 4106723 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 4105794..4106723 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905027.1 CDS STU288_19710 NC_021151.1 4106884 4108734 D COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxy-acid dehydratase 4106884..4108734 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905028.1 CDS STU288_19715 NC_021151.1 4108737 4110281 D COG1171 Threonine dehydratase; threonine dehydratase 4108737..4110281 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905029.1 CDS STU288_19720 NC_021151.1 4110565 4110882 D COG4679 Phage-related protein; hypothetical protein 4110565..4110882 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905030.1 CDS STU288_19725 NC_021151.1 4110879 4111220 D COG5606 Uncharacterized conserved small protein; XRE family transcriptional regulator 4110879..4111220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905031.1 CDS STU288_19730 NC_021151.1 4111223 4112110 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator IlvY complement(4111223..4112110) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905032.1 CDS STU288_19735 NC_021151.1 4112274 4113749 D COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 4112274..4113749 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905033.1 CDS STU288_19740 NC_021151.1 4113841 4114122 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase C complement(4113841..4114122) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905034.1 CDS STU288_19745 NC_021151.1 4114450 4114560 D putative inner membrane protein 4114450..4114560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905035.1 CDS STU288_19750 NC_021151.1 4114660 4116684 D COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase Rep 4114660..4116684 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905036.1 CDS STU288_19755 NC_021151.1 4116724 4118205 R COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase complement(4116724..4118205) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905037.1 CDS STU288_19760 NC_021151.1 4118324 4119589 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlB complement(4118324..4119589) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905038.1 CDS trxA NC_021151.1 4119733 4120062 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 4119733..4120062 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905039.1 CDS rho NC_021151.1 4120481 4121740 D COG1158 Transcription termination factor; transcription termination factor Rho 4120481..4121740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905040.1 CDS STU288_19775 NC_021151.1 4121970 4123073 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4121970..4123073 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905041.1 CDS STU288_19780 NC_021151.1 4123085 4124131 D COG3765 Chain length determinant protein; lipopolysaccharide biosynthesis protein WzzE 4123085..4124131 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905042.1 CDS STU288_19785 NC_021151.1 4124187 4125317 D COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl-D-glucosamine 2-epimerase 4124187..4125317 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905043.1 CDS wecC NC_021151.1 4125314 4126576 D COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; UDP-N-acetyl-D-mannosamine dehydrogenase 4125314..4126576 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905044.1 CDS STU288_19795 NC_021151.1 4126576 4127643 D COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4126576..4127643 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905045.1 CDS STU288_19800 NC_021151.1 4127676 4127900 D COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 4127676..4127900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905046.1 CDS STU288_19805 NC_021151.1 4127878 4128555 D TDP-fucosamine acetyltransferase 4127878..4128555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905047.1 CDS STU288_19810 NC_021151.1 4128560 4129690 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4128560..4129690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905048.1 CDS STU288_19815 NC_021151.1 4129692 4130942 D COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen translocase 4129692..4130942 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905049.1 CDS STU288_19820 NC_021151.1 4130939 4132018 D 4-alpha-L-fucosyltransferase 4130939..4132018 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905050.1 CDS STU288_19825 NC_021151.1 4132015 4133373 D common antigen polymerase 4132015..4133373 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905051.1 CDS STU288_19830 NC_021151.1 4133370 4134110 D COG1922 Teichoic acid biosynthesis proteins; UDP-N-acetyl-D-mannosaminuronic acid transferase 4133370..4134110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905052.1 CDS STU288_19835 NC_021151.1 4134317 4135702 D COG1113 Gamma-aminobutyrate permease and related permeases; transport protein YifK 4134317..4135702 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905053.1 CDS STU288_19840 NC_021151.1 4136819 4138018 R COG3071 Uncharacterized enzyme of heme biosynthesis; protoheme IX biogenesis protein complement(4136819..4138018) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905054.1 CDS STU288_19845 NC_021151.1 4138018 4139187 R COG2959 Uncharacterized enzyme of heme biosynthesis; uroporphyrinogen III C-methyltransferase complement(4138018..4139187) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905055.1 CDS hemD NC_021151.1 4139209 4139949 R COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(4139209..4139949) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905056.1 CDS hemC NC_021151.1 4139946 4140887 R COG0181 Porphobilinogen deaminase; porphobilinogen deaminase complement(4139946..4140887) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905057.1 CDS cyaA NC_021151.1 4141264 4143810 D COG3072 Adenylate cyclase; adenylate cyclase 4141264..4143810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905058.1 CDS STU288_19865 NC_021151.1 4143918 4144271 D putative inner membrane protein 4143918..4144271 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905059.1 CDS STU288_19870 NC_021151.1 4144457 4144999 D putative inner membrane protein 4144457..4144999 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905060.1 CDS cyaY NC_021151.1 4145444 4145764 R COG1965 Protein implicated in iron transport, frataxin homolog; frataxin-like protein complement(4145444..4145764) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905061.1 CDS STU288_19880 NC_021151.1 4145834 4146223 R hypothetical protein complement(4145834..4146223) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905062.1 CDS STU288_19885 NC_021151.1 4146351 4146443 R hypothetical protein complement(4146351..4146443) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905063.1 CDS STU288_19890 NC_021151.1 4146919 4147122 D COG5567 Predicted small periplasmic lipoprotein; lipoprotein 4146919..4147122 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905064.1 CDS dapF NC_021151.1 4147159 4147983 D COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 4147159..4147983 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905065.1 CDS STU288_19900 NC_021151.1 4147980 4148687 D COG3159 Uncharacterized protein conserved in bacteria; hypothetical protein 4147980..4148687 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905066.1 CDS xerC NC_021151.1 4148684 4149586 D COG4973 Site-specific recombinase XerC; site-specific tyrosine recombinase XerC 4148684..4149586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905067.1 CDS STU288_19910 NC_021151.1 4149586 4150302 D COG1011 Predicted hydrolase (HAD superfamily); flavin mononucleotide phosphatase 4149586..4150302 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905068.1 CDS uvrD NC_021151.1 4150438 4152600 D COG0210 Superfamily I DNA and RNA helicases; DNA-dependent helicase II 4150438..4152600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905069.1 CDS STU288_19920 NC_021151.1 4153072 4154022 D COG0598 Mg2+ and Co2+ transporters; magnesium/nickel/cobalt transporter CorA 4153072..4154022 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905070.1 CDS STU288_19925 NC_021151.1 4154071 4154451 R hypothetical protein complement(4154071..4154451) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905071.1 CDS STU288_19930 NC_021151.1 4154467 4154925 R hypothetical protein complement(4154467..4154925) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905072.1 CDS STU288_19935 NC_021151.1 4154960 4155844 R COG2962 Predicted permeases; chloramphenical resistance permease RarD complement(4154960..4155844) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905073.1 CDS STU288_19940 NC_021151.1 4155888 4156355 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein complement(4155888..4156355) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905074.1 CDS STU288_19945 NC_021151.1 4156520 4157389 D COG2829 Outer membrane phospholipase A; phospholipase A 4156520..4157389 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905075.1 CDS STU288_19950 NC_021151.1 4157473 4159302 D COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ 4157473..4159302 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905076.1 CDS STU288_19955 NC_021151.1 4159366 4159986 D COG1280 Putative threonine efflux protein; threonine efflux system 4159366..4159986 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905077.1 CDS rhtB NC_021151.1 4160026 4160646 R COG1280 Putative threonine efflux protein; homoserine/homoserine lactone efflux protein complement(4160026..4160646) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905078.1 CDS STU288_19965 NC_021151.1 4160757 4161773 D COG2267 Lysophospholipase; lysophospholipase L2 4160757..4161773 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905079.1 CDS STU288_19970 NC_021151.1 4161789 4162589 D COG0561 Predicted hydrolases of the HAD superfamily; hydrolase 4161789..4162589 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905080.1 CDS STU288_19975 NC_021151.1 4162670 4163569 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative membrane protein yigM 4162670..4163569 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905081.1 CDS STU288_19980 NC_021151.1 4163457 4164410 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator MetR complement(4163457..4164410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905082.1 CDS STU288_19985 NC_021151.1 4164659 4166923 D COG0620 Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4164659..4166923 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905083.1 CDS STU288_19990 NC_021151.1 4167076 4167210 R hypothetical protein complement(4167076..4167210) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905084.1 CDS STU288_19995 NC_021151.1 4167267 4168610 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative arylsulfatase regulator 4167267..4168610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905085.1 CDS STU288_20000 NC_021151.1 4168690 4169502 R COG0412 Dienelactone hydrolase and related enzymes; dienelactone hydrolase complement(4168690..4169502) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905086.1 CDS STU288_20005 NC_021151.1 4169761 4170522 D COG2820 Uridine phosphorylase; uridine phosphorylase 4169761..4170522 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905087.1 CDS STU288_20010 NC_021151.1 4170662 4172092 D COG1322 Uncharacterized protein conserved in bacteria; DNA recombination protein RmuC 4170662..4172092 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905088.1 CDS ubiE NC_021151.1 4172188 4172943 D COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 4172188..4172943 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905089.1 CDS STU288_20020 NC_021151.1 4172953 4173558 D COG3165 Uncharacterized protein conserved in bacteria; Protein YigP 4172953..4173558 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905090.1 CDS ubiB NC_021151.1 4173555 4175195 D COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein UbiB 4173555..4175195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905091.1 CDS tatA NC_021151.1 4175401 4175655 D COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein A 4175401..4175655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905092.1 CDS STU288_20035 NC_021151.1 4175659 4176207 D COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 4175659..4176207 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905093.1 CDS STU288_20040 NC_021151.1 4176210 4176989 D COG0805 Sec-independent protein secretion pathway component TatC; twin-arginine protein translocation system subunit TatC 4176210..4176989 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905094.1 CDS STU288_20045 NC_021151.1 4177031 4177813 D COG0084 Mg-dependent DNase; DNase TatD 4177031..4177813 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905095.1 CDS rfaH NC_021151.1 4177821 4178309 R COG0250 Transcription antiterminator; transcriptional activator RfaH complement(4177821..4178309) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905096.1 CDS STU288_20055 NC_021151.1 4178504 4179973 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4178504..4179973 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905097.1 CDS fre NC_021151.1 4180059 4180760 D COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; FMN reductase 4180059..4180760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905098.1 CDS fadA NC_021151.1 4183034 4184197 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(4183034..4184197) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905099.1 CDS fadB NC_021151.1 4184207 4186396 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(4184207..4186396) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905100.1 CDS STU288_20085 NC_021151.1 4186586 4187917 D COG0006 Xaa-Pro aminopeptidase; proline dipeptidase 4186586..4187917 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905101.1 CDS STU288_20090 NC_021151.1 4187917 4188531 D COG1739 Uncharacterized conserved protein; hypothetical protein 4187917..4188531 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905102.1 CDS STU288_20095 NC_021151.1 4188570 4190021 D COG0168 Trk-type K+ transport systems, membrane components; potassium transporter 4188570..4190021 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905103.1 CDS hemG NC_021151.1 4190033 4190578 D COG4635 Flavodoxin; protoporphyrinogen oxidase 4190033..4190578 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905104.1 CDS STU288_20105 NC_021151.1 4196582 4197112 R COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4196582..4197112) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905105.1 CDS mobA NC_021151.1 4197094 4197678 R COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4197094..4197678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905106.1 CDS STU288_20115 NC_021151.1 4197748 4198017 D COG3084 Uncharacterized protein conserved in bacteria; Protein yihD 4197748..4198017 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905107.1 CDS STU288_20120 NC_021151.1 4198094 4199080 D COG2334 Putative homoserine kinase type II (protein kinase fold); serine/threonine protein kinase 4198094..4199080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905108.1 CDS STU288_20125 NC_021151.1 4199097 4199720 D COG0526 Thiol-disulfide isomerase and thioredoxins; periplasmic protein disulfide isomerase I 4199097..4199720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905109.1 CDS STU288_20130 NC_021151.1 4199733 4200641 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; acyltransferase complement(4199733..4200641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905110.1 CDS STU288_20135 NC_021151.1 4201029 4203815 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 4201029..4203815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905111.1 CDS engB NC_021151.1 4204150 4204782 R COG0218 Predicted GTPase; GTP-binding protein YsxC complement(4204150..4204782) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905112.1 CDS STU288_20145 NC_021151.1 4205022 4205246 D putative cytoplasmic protein 4205022..4205246 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905113.1 CDS STU288_20150 NC_021151.1 4205365 4205880 D COG3078 Uncharacterized protein conserved in bacteria; Der GTPase activator 4205365..4205880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905114.1 CDS STU288_20155 NC_021151.1 4206069 4207442 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 4206069..4207442 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905115.1 CDS glnG NC_021151.1 4207755 4209164 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen regulation protein NR(I) complement(4207755..4209164) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905116.1 CDS glnL NC_021151.1 4209173 4210222 R COG3852 Signal transduction histidine kinase, nitrogen specific; nitrogen regulation protein NR(II) complement(4209173..4210222) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905117.1 CDS glnA NC_021151.1 4210497 4211906 R COG0174 Glutamine synthetase; glutamine synthetase complement(4210497..4211906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905118.1 CDS STU288_20175 NC_021151.1 4212282 4214105 D COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 4212282..4214105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905119.1 CDS STU288_20180 NC_021151.1 4214160 4214894 R COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein complement(4214160..4214894) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905120.1 CDS STU288_20185 NC_021151.1 4214879 4215757 R COG0535 Predicted Fe-S oxidoreductases; hypothetical protein complement(4214879..4215757) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905121.1 CDS STU288_20190 NC_021151.1 4215754 4216995 R COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase complement(4215754..4216995) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905122.1 CDS STU288_20195 NC_021151.1 4216997 4217872 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative membrane-associated metal-dependent hydrolase complement(4216997..4217872) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905123.1 CDS STU288_20200 NC_021151.1 4217865 4218473 R hypothetical protein complement(4217865..4218473) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905124.1 CDS STU288_20205 NC_021151.1 4218903 4219751 R putative cytoplasmic protein complement(4218903..4219751) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905125.1 CDS ompL NC_021151.1 4219908 4220600 R outer membrane porin L complement(4219908..4220600) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905126.1 CDS STU288_20215 NC_021151.1 4220668 4222089 R COG2211 Na+/melibiose symporter and related transporters; Melibiose carrier protein Thiomethylgalactoside permease II complement(4220668..4222089) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905127.1 CDS STU288_20220 NC_021151.1 4222135 4223517 R COG2211 Na+/melibiose symporter and related transporters; membrane permease complement(4222135..4223517) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905128.1 CDS STU288_20225 NC_021151.1 4223563 4225599 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase complement(4223563..4225599) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905129.1 CDS STU288_20230 NC_021151.1 4225643 4226500 R COG2017 Galactose mutarotase and related enzymes; aldose-1-epimerase complement(4225643..4226500) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905130.1 CDS STU288_20235 NC_021151.1 4226504 4227745 R COG2942 N-acyl-D-glucosamine 2-epimerase; isomerase complement(4226504..4227745) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905131.1 CDS STU288_20240 NC_021151.1 4227761 4228639 R COG3684 Tagatose-1,6-bisphosphate aldolase; aldolase complement(4227761..4228639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905132.1 CDS STU288_20245 NC_021151.1 4228662 4229558 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; NADH-dependent gamma-hydroxybutyrate dehydrogenase complement(4228662..4229558) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905133.1 CDS STU288_20250 NC_021151.1 4229723 4230619 D COG0524 Sugar kinases, ribokinase family; Bifunctional protein hldE 4229723..4230619 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905134.1 CDS STU288_20255 NC_021151.1 4230653 4231456 D COG1349 Transcriptional regulators of sugar metabolism; putative HTH-type transcriptional regulator yihW 4230653..4231456 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905135.1 CDS STU288_20260 NC_021151.1 4231647 4232246 D COG1011 Predicted hydrolase (HAD superfamily); alpha-D-glucose-1-phosphatase 4231647..4232246 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905136.1 CDS STU288_20265 NC_021151.1 4232240 4233112 D COG1295 Predicted membrane protein; hypothetical protein 4232240..4233112 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905137.1 CDS STU288_20270 NC_021151.1 4233109 4233546 D COG1490 D-Tyr-tRNAtyr deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4233109..4233546 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905138.1 CDS STU288_20275 NC_021151.1 4233543 4234532 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 4233543..4234532 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905139.1 CDS STU288_20280 NC_021151.1 4234547 4234975 R COG5499 Predicted transcription regulator containing HTH domain; hypothetical protein complement(4234547..4234975) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905140.1 CDS STU288_20285 NC_021151.1 4234990 4235301 R COG4680 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4234990..4235301) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905141.1 CDS STU288_20290 NC_021151.1 4235387 4236316 R COG0657 Esterase/lipase; lipase complement(4235387..4236316) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905142.1 CDS STU288_20295 NC_021151.1 4236534 4236845 D COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 4236534..4236845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905143.1 CDS STU288_20300 NC_021151.1 4236846 4237136 D COG2944 Predicted transcriptional regulator; XRE family transcriptional regulator 4236846..4237136 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905144.1 CDS STU288_20305 NC_021151.1 4237183 4238112 R COG3058 Uncharacterized protein involved in formate dehydrogenase formation; formate dehydrogenase accessory protein FdhE complement(4237183..4238112) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905145.1 CDS STU288_20310 NC_021151.1 4238109 4238744 R COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-O subunit gamma complement(4238109..4238744) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905146.1 CDS STU288_20315 NC_021151.1 4238741 4239643 R COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-O Fe-S subunit complement(4238741..4239643) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905147.1 CDS STU288_20330 NC_021151.1 4242901 4243737 D COG1526 Uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase accessory protein 4242901..4243737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905148.1 CDS STU288_20335 NC_021151.1 4244005 4245036 R lipoprotein complement(4244005..4245036) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905149.1 CDS STU288_20340 NC_021151.1 4245219 4246319 D lipoprotein 4245219..4246319 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905150.1 CDS STU288_20345 NC_021151.1 4246674 4246997 R AzlD Branched-chain amino acid transport complement(4246674..4246997) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905151.1 CDS STU288_20350 NC_021151.1 4246997 4247656 R COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); AzlC family protein complement(4246997..4247656) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905152.1 CDS STU288_20355 NC_021151.1 4247757 4248305 D COG1396 Predicted transcriptional regulators; putative HTH-type transcriptional regulator ydcN 4247757..4248305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905153.1 CDS STU288_20360 NC_021151.1 4248394 4248708 R COG3254 Uncharacterized conserved protein; L-rhamnose 1-epimerase complement(4248394..4248708) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905154.1 CDS STU288_20365 NC_021151.1 4248705 4249853 R COG1454 Alcohol dehydrogenase, class IV; putative alcohol dehydrogenase complement(4248705..4249853) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905155.1 CDS STU288_20370 NC_021151.1 4249980 4250807 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase complement(4249980..4250807) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905156.1 CDS STU288_20375 NC_021151.1 4250950 4252209 R COG4806 L-rhamnose isomerase; L-rhamnose isomerase complement(4250950..4252209) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905157.1 CDS rhaB NC_021151.1 4252206 4253675 R COG1070 Sugar (pentulose and hexulose) kinases; rhamnulokinase complement(4252206..4253675) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905158.1 CDS STU288_20385 NC_021151.1 4253963 4254799 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaS 4253963..4254799 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905159.1 CDS STU288_20390 NC_021151.1 4254952 4255800 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaR 4254952..4255800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905160.1 CDS STU288_20395 NC_021151.1 4255797 4256831 R rhamnose-proton symporter complement(4255797..4256831) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905161.1 CDS STU288_20400 NC_021151.1 4257300 4257425 D hypothetical protein 4257300..4257425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905162.1 CDS STU288_20405 NC_021151.1 4257462 4258133 D hypothetical protein 4257462..4258133 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905163.1 CDS STU288_20410 NC_021151.1 4258291 4259598 R COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; trap dicarboxylate transporter subunit DctM complement(4258291..4259598) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905164.1 CDS STU288_20415 NC_021151.1 4259591 4260106 R COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; putative TRAP transporter small permease protein complement(4259591..4260106) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905165.1 CDS STU288_20420 NC_021151.1 4260125 4261108 R COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; trap dicarboxylate transporter subunit DctP complement(4260125..4261108) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905166.1 CDS STU288_20425 NC_021151.1 4261437 4262057 D COG0605 Superoxide dismutase; superoxide dismutase 4261437..4262057 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905167.1 CDS STU288_20430 NC_021151.1 4262127 4262816 D COG2258 Uncharacterized protein conserved in bacteria; 6-N-hydroxylaminopurine resistance protein 4262127..4262816 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905168.1 CDS STU288_20435 NC_021151.1 4262828 4263223 D hypothetical protein 4262828..4263223 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905169.1 CDS cpxA NC_021151.1 4263274 4264647 R COG0642 Signal transduction histidine kinase; two-component sensor protein complement(4263274..4264647) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905170.1 CDS STU288_20445 NC_021151.1 4264644 4265342 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator CpxR complement(4264644..4265342) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905171.1 CDS cpxP NC_021151.1 4265493 4265993 D COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic repressor CpxP 4265493..4265993 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905172.1 CDS fieF NC_021151.1 4266141 4267043 D COG0053 Predicted Co/Zn/Cd cation transporters; ferrous iron efflux protein F 4266141..4267043 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905173.1 CDS STU288_20460 NC_021151.1 4267228 4268190 D COG0205 6-phosphofructokinase; 6-phosphofructokinase 4267228..4268190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905174.1 CDS STU288_20465 NC_021151.1 4268394 4269383 D COG1613 ABC-type sulfate transport system, periplasmic component; sulfate transporter subunit 4268394..4269383 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905175.1 CDS STU288_20470 NC_021151.1 4269484 4270239 D COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 4269484..4270239 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905176.1 CDS STU288_20475 NC_021151.1 4270502 4271836 D COG2211 Na+/melibiose symporter and related transporters; Na+/melibiose symporter 4270502..4271836 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905177.1 CDS STU288_20480 NC_021151.1 4271847 4272806 D COG0524 Sugar kinases, ribokinase family; aminoimidazole riboside kinase 4271847..4272806 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905178.1 CDS STU288_20485 NC_021151.1 4272816 4273856 D COG1397 ADP-ribosylglycohydrolase; hypothetical protein 4272816..4273856 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905179.1 CDS STU288_20490 NC_021151.1 4273919 4274641 D COG2188 Transcriptional regulators; GntR family transcriptional regulator 4273919..4274641 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905180.1 CDS STU288_20495 NC_021151.1 4274739 4274903 D hypothetical protein 4274739..4274903 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905181.1 CDS STU288_20500 NC_021151.1 4274919 4275050 D hypothetical protein 4274919..4275050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905182.1 CDS STU288_20505 NC_021151.1 4275140 4275490 R COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; polyketide synthase complement(4275140..4275490) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905183.1 CDS STU288_20510 NC_021151.1 4275504 4277096 R COG1070 Sugar (pentulose and hexulose) kinases; autoinducer-2 (AI-2) kinase complement(4275504..4277096) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905184.1 CDS STU288_20515 NC_021151.1 4277184 4278143 R COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; transcriptional regulator LsrR complement(4277184..4278143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905185.1 CDS STU288_20520 NC_021151.1 4278399 4279934 D COG1129 ABC-type sugar transport system, ATPase component; autoinducer 2 ABC transporter ATP-binding protein LsrA 4278399..4279934 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905186.1 CDS STU288_20525 NC_021151.1 4279928 4280971 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 ABC transporter permease LsrC 4279928..4280971 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905187.1 CDS STU288_20530 NC_021151.1 4280971 4281969 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 import system permease LsrD 4280971..4281969 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905188.1 CDS STU288_20535 NC_021151.1 4281998 4283020 D COG1879 ABC-type sugar transport system, periplasmic component; autoinducer 2-binding protein lsrB 4281998..4283020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905189.1 CDS STU288_20540 NC_021151.1 4283049 4283924 D COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; autoinducer 2 aldolase 4283049..4283924 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905190.1 CDS STU288_20545 NC_021151.1 4284007 4284297 D COG1359 Uncharacterized conserved protein; autoinducer-2 (AI-2) modifying protein LsrG 4284007..4284297 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905191.1 CDS STU288_20550 NC_021151.1 4284307 4285071 D COG0036 Pentose-5-phosphate-3-epimerase; epimerase 4284307..4285071 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905192.1 CDS tpiA NC_021151.1 4285163 4285930 R COG0149 Triosephosphate isomerase; triosephosphate isomerase complement(4285163..4285930) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905193.1 CDS STU288_20560 NC_021151.1 4286043 4286639 R hypothetical protein complement(4286043..4286639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905194.1 CDS STU288_20565 NC_021151.1 4286740 4287168 D COG3152 Predicted membrane protein; hypothetical protein 4286740..4287168 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905195.1 CDS STU288_20570 NC_021151.1 4287275 4288021 R COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; ferredoxin-NADP reductase complement(4287275..4288021) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905196.1 CDS glpX NC_021151.1 4288118 4289128 R COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose 1,6-bisphosphatase II complement(4288118..4289128) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905197.1 CDS glpK NC_021151.1 4289240 4290748 R COG0554 Glycerol kinase; glycerol kinase complement(4289240..4290748) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905198.1 CDS STU288_20585 NC_021151.1 4290769 4291614 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator GlpF complement(4290769..4291614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905199.1 CDS STU288_20590 NC_021151.1 4292013 4292252 D COG3074 Uncharacterized protein conserved in bacteria; septal ring assembly protein ZapB 4292013..4292252 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905200.1 CDS STU288_20595 NC_021151.1 4292474 4292959 R COG0684 Demethylmenaquinone methyltransferase; ribonuclease activity regulator protein RraA complement(4292474..4292959) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905201.1 CDS STU288_20600 NC_021151.1 4293052 4293981 R COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4293052..4293981) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905202.1 CDS hslU NC_021151.1 4294048 4295379 R COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU complement(4294048..4295379) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905203.1 CDS STU288_20610 NC_021151.1 4295389 4295919 R COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease subunit HslV complement(4295389..4295919) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905204.1 CDS STU288_20615 NC_021151.1 4296011 4296985 R COG3087 Cell division protein; essential cell division protein FtsN complement(4296011..4296985) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905205.1 CDS STU288_20620 NC_021151.1 4297079 4298104 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator CytR complement(4297079..4298104) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905206.1 CDS STU288_20625 NC_021151.1 4298259 4300457 R COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA complement(4298259..4300457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905207.1 CDS STU288_20630 NC_021151.1 4300661 4300873 D COG0254 Ribosomal protein L31; hypothetical protein 4300661..4300873 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905208.1 CDS STU288_20635 NC_021151.1 4300919 4301581 R hypothetical protein complement(4300919..4301581) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905209.1 CDS STU288_20640 NC_021151.1 4301782 4303572 R putative arylsulfate sulfotransferase complement(4301782..4303572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905210.1 CDS STU288_20645 NC_021151.1 4303457 4303618 D hypothetical protein 4303457..4303618 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905211.1 CDS STU288_20650 NC_021151.1 4304029 4304346 R COG3060 Transcriptional regulator of met regulon; transcriptional repressor protein MetJ complement(4304029..4304346) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905212.1 CDS STU288_20655 NC_021151.1 4304611 4305771 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 4304611..4305771 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905213.1 CDS metL NC_021151.1 4305774 4308206 D COG0527 Aspartokinases; bifunctional aspartate kinase II/homoserine dehydrogenase II 4305774..4308206 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905214.1 CDS STU288_20665 NC_021151.1 4308322 4309179 R COG0668 Small-conductance mechanosensitive channel; putative inner membrane protein complement(4308322..4309179) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905215.1 CDS STU288_20670 NC_021151.1 4309182 4310180 R hypothetical protein complement(4309182..4310180) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905216.1 CDS STU288_20675 NC_021151.1 4310415 4311539 R hypothetical protein complement(4310415..4311539) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905217.1 CDS STU288_20680 NC_021151.1 4311675 4313231 D COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; hypothetical protein 4311675..4313231 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905218.1 CDS metF NC_021151.1 4313426 4314316 D COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4313426..4314316 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905219.1 CDS STU288_20690 NC_021151.1 4314481 4316661 D COG0376 Catalase (peroxidase I); catalase/hydroperoxidase HPI(I) 4314481..4316661 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905220.1 CDS STU288_20695 NC_021151.1 4316719 4317342 R COG3738 Uncharacterized protein conserved in bacteria; NADH:ubiquinone oxidoreductase complement(4316719..4317342) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905221.1 CDS gldA NC_021151.1 4317601 4318704 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(4317601..4318704) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905222.1 CDS STU288_20705 NC_021151.1 4318716 4319378 R COG0176 Transaldolase; fructose-6-phosphate aldolase complement(4318716..4319378) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905223.1 CDS STU288_20710 NC_021151.1 4319389 4321890 R COG1925 Phosphotransferase system, HPr-related proteins; mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA complement(4319389..4321890) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905224.1 CDS STU288_20715 NC_021151.1 4322199 4323278 D COG1299 Phosphotransferase system, fructose-specific IIC component; PTS system fructose-like transporter subunit EIIC 4322199..4323278 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905225.1 CDS STU288_20720 NC_021151.1 4323293 4323613 D COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 4323293..4323613 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905226.1 CDS pflD NC_021151.1 4323712 4326009 D COG1882 Pyruvate-formate lyase; formate acetyltransferase 2 4323712..4326009 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905227.1 CDS STU288_20730 NC_021151.1 4325975 4326853 D COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase II activase 4325975..4326853 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905228.1 CDS STU288_20735 NC_021151.1 4326855 4327208 D COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 4326855..4327208 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905229.1 CDS STU288_20740 NC_021151.1 4327195 4328046 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(4327195..4328046) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905230.1 CDS STU288_20745 NC_021151.1 4328207 4329940 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein complement(4328207..4329940) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905231.1 CDS STU288_20750 NC_021151.1 4330151 4332802 R COG2352 Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(4330151..4332802) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905232.1 CDS STU288_20755 NC_021151.1 4333171 4334322 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; acetylornithine deacetylase complement(4333171..4334322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905233.1 CDS argC NC_021151.1 4334411 4335415 D COG0002 Acetylglutamate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase 4334411..4335415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905234.1 CDS STU288_20765 NC_021151.1 4335426 4336199 D COG0548 Acetylglutamate kinase; acetylglutamate kinase 4335426..4336199 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905235.1 CDS STU288_20770 NC_021151.1 4336317 4337693 D COG0165 Argininosuccinate lyase; argininosuccinate lyase 4336317..4337693 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905236.1 CDS STU288_20775 NC_021151.1 4337978 4338895 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator OxyR 4337978..4338895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905237.1 CDS STU288_20780 NC_021151.1 4338878 4340278 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; soluble pyridine nucleotide transhydrogenase complement(4338878..4340278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905238.1 CDS STU288_20785 NC_021151.1 4340480 4341112 D COG1309 Transcriptional regulator; DNA-binding transcriptional repressor FabR 4340480..4341112 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905239.1 CDS STU288_20790 NC_021151.1 4341128 4341487 D COG1882 Pyruvate-formate lyase; hypothetical protein 4341128..4341487 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905240.1 CDS STU288_20795 NC_021151.1 4341534 4342634 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (uracil-5-)-methyltransferase complement(4341534..4342634) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905241.1 CDS btuB NC_021151.1 4343008 4344852 D COG4206 Outer membrane cobalamin receptor protein; vitamin B12/cobalamin outer membrane transporter 4343008..4344852 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905242.1 CDS STU288_20805 NC_021151.1 4344797 4345648 D COG0796 Glutamate racemase; glutamate racemase 4344797..4345648 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905243.1 CDS murB NC_021151.1 4351549 4352577 D COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 4351549..4352577 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905244.1 CDS STU288_20815 NC_021151.1 4352574 4353536 D COG1654 Biotin operon repressor; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4352574..4353536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905245.1 CDS STU288_20820 NC_021151.1 4353571 4354521 R COG1072 Panthothenate kinase; pantothenate kinase complement(4353571..4354521) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905246.1 CDS STU288_20825 NC_021151.1 4355480 4356664 D COG0050 GTPases - translation elongation factors; elongation factor Tu 4355480..4356664 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905247.1 CDS secE NC_021151.1 4356894 4357277 D COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 4356894..4357277 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905248.1 CDS nusG NC_021151.1 4357279 4357824 D COG0250 Transcription antiterminator; transcription antitermination protein NusG 4357279..4357824 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905249.1 CDS STU288_20840 NC_021151.1 4357982 4358410 D COG0080 Ribosomal protein L11; 50S ribosomal protein L11 4357982..4358410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905250.1 CDS rplA NC_021151.1 4358414 4359118 D COG0081 Ribosomal protein L1; 50S ribosomal protein L1 4358414..4359118 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905251.1 CDS rplJ NC_021151.1 4359538 4360035 D COG0244 Ribosomal protein L10; 50S ribosomal protein L10 4359538..4360035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905252.1 CDS rplL NC_021151.1 4360102 4360467 D COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 4360102..4360467 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905253.1 CDS rpoB NC_021151.1 4360785 4364813 D COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta 4360785..4364813 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905254.1 CDS STU288_20865 NC_021151.1 4364890 4369113 D COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-directed RNA polymerase subunit beta' 4364890..4369113 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905255.1 CDS STU288_20870 NC_021151.1 4369200 4369478 D inner membrane protein 4369200..4369478 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905256.1 CDS STU288_20875 NC_021151.1 4369484 4369837 R COG0526 Thiol-disulfide isomerase and thioredoxins; hypothetical protein complement(4369484..4369837) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905257.1 CDS STU288_20880 NC_021151.1 4369782 4369919 R hypothetical protein complement(4369782..4369919) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905258.1 CDS STU288_20885 NC_021151.1 4370209 4371237 D type III secretion system protein 4370209..4371237 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905259.1 CDS STU288_20890 NC_021151.1 4371227 4371436 D COG3104 Dipeptide/tripeptide permease; hypothetical protein 4371227..4371436 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905260.1 CDS STU288_20895 NC_021151.1 4371560 4371748 D hypothetical protein 4371560..4371748 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905261.1 CDS thiH NC_021151.1 4371899 4373032 R COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; thiamine biosynthesis protein ThiH complement(4371899..4373032) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905262.1 CDS thiG NC_021151.1 4373029 4373799 R COG2022 Uncharacterized enzyme of thiazole biosynthesis; thiazole synthase complement(4373029..4373799) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905263.1 CDS STU288_20910 NC_021151.1 4373801 4374001 R COG2104 Sulfur transfer protein involved in thiamine biosynthesis; sulfur carrier protein ThiS complement(4373801..4374001) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905264.1 CDS STU288_20915 NC_021151.1 4373982 4374740 R COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; sulfur carrier protein ThiS adenylyltransferase complement(4373982..4374740) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905265.1 CDS STU288_20920 NC_021151.1 4374733 4375368 R COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(4374733..4375368) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905266.1 CDS STU288_20925 NC_021151.1 4375368 4377263 R COG0422 Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase ThiC complement(4375368..4377263) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905267.1 CDS STU288_20930 NC_021151.1 4377627 4378115 R COG3160 Regulator of sigma D; anti-RNA polymerase sigma 70 factor complement(4377627..4378115) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905268.1 CDS nudC NC_021151.1 4378208 4378981 D COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; NADH pyrophosphatase 4378208..4378981 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905269.1 CDS hemE NC_021151.1 4379022 4380086 D COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 4379022..4380086 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905270.1 CDS STU288_20945 NC_021151.1 4380096 4380767 D COG1515 Deoxyinosine 3'endonuclease (endonuclease V); endonuclease V 4380096..4380767 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905271.1 CDS STU288_20950 NC_021151.1 4380809 4381399 D COG3068 Uncharacterized protein conserved in bacteria; hypothetical protein 4380809..4381399 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905272.1 CDS STU288_20955 NC_021151.1 4381586 4381858 D COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit alpha 4381586..4381858 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905273.1 CDS STU288_20960 NC_021151.1 4381870 4382562 D hypothetical protein 4381870..4382562 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905274.1 CDS zraP NC_021151.1 4382604 4383059 R zinc resistance protein complement(4382604..4383059) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905275.1 CDS STU288_20970 NC_021151.1 4383313 4384710 D COG0642 Signal transduction histidine kinase; sensor protein ZraS 4383313..4384710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905276.1 CDS STU288_20975 NC_021151.1 4384716 4386041 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional regulatory protein ZraR 4384716..4386041 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905277.1 CDS STU288_20980 NC_021151.1 4386038 4387327 R COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase complement(4386038..4387327) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905278.1 CDS purH NC_021151.1 4387339 4388928 R COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4387339..4388928) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905279.1 CDS STU288_20990 NC_021151.1 4395123 4395560 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(4395123..4395560) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905280.1 CDS STU288_20995 NC_021151.1 4395717 4396646 D COG1897 Homoserine trans-succinylase; homoserine O-succinyltransferase 4395717..4396646 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905281.1 CDS STU288_21000 NC_021151.1 4396915 4398516 D COG2225 Malate synthase; malate synthase 4396915..4398516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905282.1 CDS STU288_21005 NC_021151.1 4398548 4399852 D COG2224 Isocitrate lyase; isocitrate lyase 4398548..4399852 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905283.1 CDS aceK NC_021151.1 4399954 4401705 D COG4579 Isocitrate dehydrogenase kinase/phosphatase; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4399954..4401705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905284.1 CDS STU288_21015 NC_021151.1 4401669 4402103 R COG4405 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4401669..4402103) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905285.1 CDS STU288_21020 NC_021151.1 4402087 4402911 R COG1414 Transcriptional regulator; transcriptional repressor IclR complement(4402087..4402911) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905286.1 CDS metH NC_021151.1 4403215 4406898 D COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain; B12-dependent methionine synthase 4403215..4406898 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905287.1 CDS STU288_21030 NC_021151.1 4407165 4408796 D COG1283 Na+/phosphate symporter; hypothetical protein 4407165..4408796 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905288.1 CDS STU288_21035 NC_021151.1 4408872 4409561 R COG3340 Peptidase E; (alpha)-aspartyl dipeptidase complement(4408872..4409561) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905289.1 CDS STU288_21040 NC_021151.1 4409769 4410308 D COG3122 Uncharacterized protein conserved in bacteria; nucleoprotein/polynucleotide-associated enzyme 4409769..4410308 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905290.1 CDS STU288_21045 NC_021151.1 4410355 4411224 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase F 4410355..4411224 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905291.1 CDS STU288_21050 NC_021151.1 4411221 4411493 R hypothetical protein complement(4411221..4411493) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905292.1 CDS STU288_21055 NC_021151.1 4411591 4412532 R COG0385 Predicted Na+-dependent transporter; hypothetical protein complement(4411591..4412532) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905293.1 CDS STU288_21060 NC_021151.1 4412794 4413522 R hypothetical protein complement(4412794..4413522) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905294.1 CDS STU288_21065 NC_021151.1 4413719 4413985 R putative inner membrane protein complement(4413719..4413985) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905295.1 CDS STU288_21070 NC_021151.1 4414258 4414713 R hypothetical protein complement(4414258..4414713) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905296.1 CDS STU288_21075 NC_021151.1 4414710 4415174 R putative cytoplasmic protein complement(4414710..4415174) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905297.1 CDS STU288_21080 NC_021151.1 4415320 4417065 R COG5301 Phage-related tail fibre protein; bacteriophage protein complement(4415320..4417065) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905298.1 CDS STU288_21085 NC_021151.1 4417068 4417700 R COG4385 Bacteriophage P2-related tail formation protein; phage tail protein complement(4417068..4417700) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905299.1 CDS STU288_21090 NC_021151.1 4417693 4418808 R COG3948 Phage-related baseplate assembly protein; bacteriophage protein complement(4417693..4418808) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905300.1 CDS STU288_21095 NC_021151.1 4418799 4419158 R COG3628 Phage baseplate assembly protein W; baseplate complement(4418799..4419158) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905301.1 CDS STU288_21100 NC_021151.1 4419219 4419341 D hypothetical protein 4419219..4419341 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905302.1 CDS STU288_21105 NC_021151.1 4419322 4420869 R putative inner membrane protein complement(4419322..4420869) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905303.1 CDS STU288_21110 NC_021151.1 4420869 4421798 R COG0463 Glycosyltransferases involved in cell wall biogenesis; phage glycosyl transferase complement(4420869..4421798) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905304.1 CDS STU288_21115 NC_021151.1 4421795 4422157 R putative phage glucose translocase complement(4421795..4422157) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905305.1 CDS STU288_21120 NC_021151.1 4422485 4423207 R COG4540 Phage P2 baseplate assembly protein gpV; Phage lower baseplate protein complement(4422485..4423207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905306.1 CDS STU288_21125 NC_021151.1 4423217 4424260 R COG3500 Phage protein D; D protein complement(4423217..4424260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905307.1 CDS STU288_21130 NC_021151.1 4424248 4424457 R phage Tail Protein X complement(4424248..4424457) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905308.1 CDS STU288_21135 NC_021151.1 4424457 4425410 R bacteriophage protein complement(4424457..4425410) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905309.1 CDS STU288_21140 NC_021151.1 4425410 4427764 R COG5280 Phage-related minor tail protein; Tail protein complement(4425410..4427764) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905310.1 CDS STU288_21145 NC_021151.1 4427861 4427989 R phage GpE complement(4427861..4427989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905311.1 CDS STU288_21150 NC_021151.1 4427949 4428266 R prophage protein gp41 complement(4427949..4428266) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905312.1 CDS STU288_21155 NC_021151.1 4428318 4428842 R COG3498 Phage tail tube protein FII; bacteriophage tail protein complement(4428318..4428842) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905313.1 CDS STU288_21160 NC_021151.1 4428842 4430269 R COG3497 Phage tail sheath protein FI; Phage tail sheath monomer complement(4428842..4430269) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905314.1 CDS STU288_21165 NC_021151.1 4430259 4430456 R gp12 complement(4430259..4430456) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905315.1 CDS STU288_21170 NC_021151.1 4430453 4430908 R hypothetical protein complement(4430453..4430908) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905316.1 CDS STU288_21175 NC_021151.1 4431068 4431382 R gp54 complement(4431068..4431382) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905317.1 CDS STU288_21180 NC_021151.1 4431395 4432000 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase complement(4431395..4432000) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905318.1 CDS STU288_21185 NC_021151.1 4432003 4432290 R gp51 complement(4432003..4432290) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905319.1 CDS STU288_21190 NC_021151.1 4432866 4433213 D COG5566 Uncharacterized conserved protein; DNA-binding protein RdgB 4432866..4433213 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905320.1 CDS STU288_21195 NC_021151.1 4433346 4434695 R COG0527 Aspartokinases; aspartate kinase III complement(4433346..4434695) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905321.1 CDS pgi NC_021151.1 4435040 4436689 D COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 4435040..4436689 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905322.1 CDS STU288_21205 NC_021151.1 4437130 4437375 D hypothetical protein 4437130..4437375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905323.1 CDS STU288_21210 NC_021151.1 4437439 4438077 D putative lipoprotein yjbF Flags: Precursor 4437439..4438077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905324.1 CDS STU288_21215 NC_021151.1 4438074 4438811 D Capsule biosynthesis 4438074..4438811 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905325.1 CDS STU288_21220 NC_021151.1 4438811 4440907 D hypothetical protein 4438811..4440907 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905326.1 CDS STU288_21225 NC_021151.1 4441050 4441460 D COG3223 Predicted membrane protein; phosphate-starvation-inducible protein PsiE 4441050..4441460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905327.1 CDS malG NC_021151.1 4441626 4442516 R COG3833 ABC-type maltose transport systems, permease component; maltose transporter permease complement(4441626..4442516) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905328.1 CDS malF NC_021151.1 4442531 4444075 R COG1175 ABC-type sugar transport systems, permease components; maltose transporter membrane protein complement(4442531..4444075) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905329.1 CDS malE NC_021151.1 4444207 4445397 R COG2182 Maltose-binding periplasmic proteins/domains; maltose ABC transporter periplasmic protein complement(4444207..4445397) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905330.1 CDS STU288_21245 NC_021151.1 4445759 4446868 D COG3839 ABC-type sugar transport systems, ATPase components; maltose/maltodextrin transporter ATP-binding protein 4445759..4446868 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905331.1 CDS lamB NC_021151.1 4446957 4448315 D COG4580 Maltoporin (phage lambda and maltose receptor); maltoporin 4446957..4448315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905332.1 CDS STU288_21255 NC_021151.1 4448479 4449396 D maltose regulon periplasmic protein 4448479..4449396 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905333.1 CDS ubiC NC_021151.1 4449577 4450074 D COG3161 4-hydroxybenzoate synthetase (chorismate lyase); chorismate pyruvate lyase 4449577..4450074 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905334.1 CDS ubiA NC_021151.1 4450088 4450960 D COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; 4-hydroxybenzoate octaprenyltransferase 4450088..4450960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905335.1 CDS STU288_21270 NC_021151.1 4451059 4453479 R COG2937 Glycerol-3-phosphate O-acyltransferase; glycerol-3-phosphate acyltransferase complement(4451059..4453479) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905336.1 CDS STU288_21275 NC_021151.1 4453650 4454018 D COG0818 Diacylglycerol kinase; diacylglycerol kinase 4453650..4454018 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905337.1 CDS STU288_21280 NC_021151.1 4454127 4454735 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 4454127..4454735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905338.1 CDS STU288_21285 NC_021151.1 4454914 4456239 D COG0534 Na+-driven multidrug efflux pump; DNA-damage-inducible SOS response protein 4454914..4456239 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905339.1 CDS STU288_21290 NC_021151.1 4456221 4456349 D putative cytoplasmic protein 4456221..4456349 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905340.1 CDS STU288_21295 NC_021151.1 4456371 4456580 D COG3237 Uncharacterized protein conserved in bacteria; hypothetical protein 4456371..4456580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905341.1 CDS STU288_21300 NC_021151.1 4456679 4457194 R COG0735 Fe2+/Zn2+ uptake regulation proteins; zinc uptake transcriptional repressor complement(4456679..4457194) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905342.1 CDS STU288_21305 NC_021151.1 4457441 4458751 D hypothetical protein 4457441..4458751 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905343.1 CDS STU288_21310 NC_021151.1 4458839 4459837 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A 4458839..4459837 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905344.1 CDS pspG NC_021151.1 4460005 4460247 D phage shock protein G 4460005..4460247 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905345.1 CDS STU288_21320 NC_021151.1 4460422 4461405 R COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase, NADPH-dependent complement(4460422..4461405) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905346.1 CDS STU288_21325 NC_021151.1 4461470 4462885 D COG0305 Replicative DNA helicase; replicative DNA helicase 4461470..4462885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905347.1 CDS alr NC_021151.1 4462917 4463996 D COG0787 Alanine racemase; alanine racemase 4462917..4463996 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905348.1 CDS STU288_21335 NC_021151.1 4464182 4465375 D COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 4464182..4465375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905349.1 CDS aphA NC_021151.1 4465562 4466275 D COG3700 Acid phosphatase (class B); acid phosphatase/phosphotransferase 4465562..4466275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905350.1 CDS STU288_21345 NC_021151.1 4466404 4466820 D COG0432 Uncharacterized conserved protein; thiamin phosphate synthase 4466404..4466820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905351.1 CDS STU288_21350 NC_021151.1 4466823 4467179 D COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 4466823..4467179 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905352.1 CDS STU288_21355 NC_021151.1 4467180 4467518 R hypothetical protein complement(4467180..4467518) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905353.1 CDS uvrA NC_021151.1 4468092 4470917 R COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A complement(4468092..4470917) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905354.1 CDS STU288_21365 NC_021151.1 4471165 4471695 D COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 4471165..4471695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905355.1 CDS STU288_21370 NC_021151.1 4472736 4473368 D hypothetical protein 4472736..4473368 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905356.1 CDS STU288_21375 NC_021151.1 4473365 4474753 D COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 4473365..4474753 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905357.1 CDS STU288_21380 NC_021151.1 4474743 4476062 D COG1538 Outer membrane protein; putative ABC exporter outer membrane component 4474743..4476062 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905358.1 CDS STU288_21385 NC_021151.1 4476059 4477336 D COG0845 Membrane-fusion protein; Leukotoxin secretion protein D 4476059..4477336 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905359.1 CDS STU288_21390 NC_021151.1 4477353 4494032 D COG1404 Subtilisin-like serine proteases; putative inner membrane protein 4477353..4494032 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905360.1 CDS STU288_21395 NC_021151.1 4494072 4496138 D COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; ABC-type bacteriocin/lantibiotic exporter, containing an N- double-glycine peptidase domain 4494072..4496138 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905361.1 CDS STU288_21400 NC_021151.1 4496416 4496697 R hypothetical protein complement(4496416..4496697) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905362.1 CDS STU288_21405 NC_021151.1 4497260 4498861 D COG4943 Predicted signal transduction protein containing sensor and EAL domains; diguanylate cyclase 4497260..4498861 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905363.1 CDS STU288_21410 NC_021151.1 4498849 4499172 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator SoxS complement(4498849..4499172) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905364.1 CDS STU288_21415 NC_021151.1 4499259 4499717 D COG0789 Predicted transcriptional regulators; redox-sensitivie transcriptional activator SoxR 4499259..4499717 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905365.1 CDS STU288_21420 NC_021151.1 4500010 4500678 D COG0625 Glutathione S-transferase; glutathione S-transferase 4500010..4500678 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905366.1 CDS STU288_21425 NC_021151.1 4501025 4502374 D COG2252 Permeases; inorganic anion transporter, sulfate permease (SulP) family protein 4501025..4502374 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905367.1 CDS STU288_21430 NC_021151.1 4502367 4502552 R hypothetical protein complement(4502367..4502552) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905368.1 CDS STU288_21435 NC_021151.1 4502524 4504170 D COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; Putative Na(+)/H(+) exchanger 4502524..4504170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905369.1 CDS STU288_21440 NC_021151.1 4504265 4505152 R COG0583 Transcriptional regulator; lysR family regulatory protein complement(4504265..4505152) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905370.1 CDS STU288_21445 NC_021151.1 4505256 4505666 D COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 4505256..4505666 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905371.1 CDS STU288_21450 NC_021151.1 4505659 4506348 D COG1346 Putative effector of murein hydrolase; hypothetical protein 4505659..4506348 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905372.1 CDS actP NC_021151.1 4506387 4508036 R COG4147 Predicted symporter; acetate permease complement(4506387..4508036) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905373.1 CDS STU288_21460 NC_021151.1 4508033 4508347 R COG3162 Predicted membrane protein; putative inner membrane protein complement(4508033..4508347) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905374.1 CDS STU288_21465 NC_021151.1 4508593 4510551 R COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase complement(4508593..4510551) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905375.1 CDS nrfA NC_021151.1 4510983 4512419 D COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; cytochrome c nitrite reductase subunit c552 4510983..4512419 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905376.1 CDS STU288_21475 NC_021151.1 4512531 4513097 D cytochrome c nitrite reductase pentaheme subunit 4512531..4513097 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905377.1 CDS STU288_21480 NC_021151.1 4513094 4513765 D COG0437 Fe-S-cluster-containing hydrogenase components 1; formate-dependent nitrite reductase subunit NrfC 4513094..4513765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905378.1 CDS STU288_21485 NC_021151.1 4513762 4514718 D COG3301 Formate-dependent nitrite reductase, membrane component; formate-dependent nitrite reductase subunit NrfD 4513762..4514718 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905379.1 CDS STU288_21490 NC_021151.1 4514711 4516933 D COG1138 Cytochrome c biogenesis factor; formate-dependent nitrite reductase, assembly protein 4514711..4516933 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905380.1 CDS STU288_21495 NC_021151.1 4516930 4517550 D COG4235 Cytochrome c biogenesis factor; formate-dependent nitrite reductase complex subunit NrfG 4516930..4517550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905381.1 CDS gltP NC_021151.1 4517895 4519205 D COG1301 Na+/H+-dicarboxylate symporters; glutamate/aspartate:proton symporter 4517895..4519205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905382.1 CDS STU288_21505 NC_021151.1 4519363 4520052 R COG0790 FOG: TPR repeat, SEL1 subfamily; tetratricopeptide repeat exported protein complement(4519363..4520052) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905383.1 CDS STU288_21520 NC_021151.1 4522731 4523639 R COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases; membrane-bound beta-hydroxylase complement(4522731..4523639) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905384.1 CDS STU288_21525 NC_021151.1 4523897 4524331 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoalkylphosphonic acid N-acetyltransferase complement(4523897..4524331) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905385.1 CDS STU288_21530 NC_021151.1 4524483 4524926 R COG2764 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4524483..4524926) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905386.1 CDS STU288_21535 NC_021151.1 4525046 4525381 R COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; hypothetical protein complement(4525046..4525381) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905387.1 CDS STU288_21540 NC_021151.1 4525849 4527351 D COG0477 Permeases of the major facilitator superfamily; proline/glycine betaine transporter 4525849..4527351 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905388.1 CDS STU288_21545 NC_021151.1 4527421 4527510 D hypothetical protein 4527421..4527510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905389.1 CDS STU288_21550 NC_021151.1 4527518 4528597 R COG0642 Signal transduction histidine kinase; sensor protein BasS/PmrB complement(4527518..4528597) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905390.1 CDS STU288_21555 NC_021151.1 4528598 4529266 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BasR complement(4528598..4529266) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905391.1 CDS STU288_21560 NC_021151.1 4529263 4530906 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; metal dependent hydrolase complement(4529263..4530906) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905392.1 CDS STU288_21565 NC_021151.1 4531040 4532377 R COG0531 Amino acid transporters; arginine:agmatin antiporter complement(4531040..4532377) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905393.1 CDS STU288_21570 NC_021151.1 4532517 4533278 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator AdiY complement(4532517..4533278) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905394.1 CDS STU288_21575 NC_021151.1 4533576 4535846 R COG1982 Arginine/lysine/ornithine decarboxylases; arginine decarboxylase complement(4533576..4535846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905395.1 CDS STU288_21580 NC_021151.1 4536076 4537008 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator MelR complement(4536076..4537008) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905396.1 CDS STU288_21585 NC_021151.1 4537277 4538632 D COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; alpha-galactosidase 4537277..4538632 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905397.1 CDS STU288_21590 NC_021151.1 4538716 4540146 D COG2211 Na+/melibiose symporter and related transporters; melibiose:sodium symporter 4538716..4540146 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905398.1 CDS STU288_21595 NC_021151.1 4540244 4541890 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumB complement(4540244..4541890) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905399.1 CDS STU288_21600 NC_021151.1 4541986 4543326 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(4541986..4543326) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905400.1 CDS STU288_21605 NC_021151.1 4544056 4544775 R COG4565 Response regulator of citrate/malate metabolism; DNA-binding transcriptional activator DcuR complement(4544056..4544775) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905401.1 CDS STU288_21610 NC_021151.1 4544772 4546403 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensory histidine kinase DcuS complement(4544772..4546403) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905402.1 CDS STU288_21615 NC_021151.1 4546759 4549188 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a 4546759..4549188 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905403.1 CDS STU288_21620 NC_021151.1 4549202 4549828 D COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase subunit B 4549202..4549828 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905404.1 CDS STU288_21625 NC_021151.1 4549821 4550594 D COG3302 DMSO reductase anchor subunit; putative dimethyl sulfoxide reductase subunit C 4549821..4550594 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905405.1 CDS STU288_21630 NC_021151.1 4550670 4551263 D COG3381 Uncharacterized component of anaerobic dehydrogenases; putative anaerobic dehydrogenase component 4550670..4551263 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905406.1 CDS STU288_21635 NC_021151.1 4551347 4552747 R COG5078 Ubiquitin-protein ligase; hypothetical protein complement(4551347..4552747) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905407.1 CDS STU288_21640 NC_021151.1 4553051 4553956 D COG3204 Uncharacterized protein conserved in bacteria; hypothetical protein 4553051..4553956 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905408.1 CDS STU288_21645 NC_021151.1 4554294 4554752 D COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 4554294..4554752 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905409.1 CDS STU288_21650 NC_021151.1 4554961 4555149 R hypothetical protein complement(4554961..4555149) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905410.1 CDS STU288_21655 NC_021151.1 4555238 4555399 R putative cytoplasmic protein complement(4555238..4555399) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905411.1 CDS STU288_21660 NC_021151.1 4555476 4555748 R COG2771 DNA-binding HTH domain-containing proteins; Transcriptional regulatory protein fixJ complement(4555476..4555748) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905412.1 CDS STU288_21665 NC_021151.1 4556328 4556636 R AraC family transcriptional regulator complement(4556328..4556636) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905413.1 CDS STU288_21670 NC_021151.1 4556774 4556899 D hypothetical protein 4556774..4556899 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905414.1 CDS STU288_21675 NC_021151.1 4557439 4557732 D COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein 4557439..4557732 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905415.1 CDS STU288_21680 NC_021151.1 4557729 4558220 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4557729..4558220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905416.1 CDS STU288_21685 NC_021151.1 4558468 4559220 R COG0671 Membrane-associated phospholipid phosphatase; nonspecific acid phosphatase complement(4558468..4559220) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905417.1 CDS STU288_21690 NC_021151.1 4559619 4559762 D hypothetical protein 4559619..4559762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905418.1 CDS STU288_21695 NC_021151.1 4560429 4560806 R hypothetical protein complement(4560429..4560806) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905419.1 CDS STU288_21700 NC_021151.1 4560878 4561210 D COG0789 Predicted transcriptional regulators; putative regulatory protein 4560878..4561210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905420.1 CDS STU288_21705 NC_021151.1 4561649 4562224 R COG1309 Transcriptional regulator; transcriptional regulator complement(4561649..4562224) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905421.1 CDS dipZ NC_021151.1 4562261 4563964 R COG4232 Thiol:disulfide interchange protein; thiol:disulfide interchange protein precursor complement(4562261..4563964) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905422.1 CDS STU288_21715 NC_021151.1 4563940 4564287 R COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent-cation tolerance protein CutA complement(4563940..4564287) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905423.1 CDS STU288_21720 NC_021151.1 4564408 4565709 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(4564408..4565709) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905424.1 CDS aspA NC_021151.1 4565824 4567260 R COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase complement(4565824..4567260) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905425.1 CDS fxsA NC_021151.1 4567601 4568077 D COG3030 Protein affecting phage T7 exclusion by the F plasmid; phage T7 F exclusion suppressor FxsA 4567601..4568077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905426.1 CDS STU288_21735 NC_021151.1 4568136 4569377 R COG0531 Amino acid transporters; transporter complement(4568136..4569377) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905427.1 CDS STU288_21740 NC_021151.1 4569653 4569946 D COG0234 Co-chaperonin GroES (HSP10); 10 kDa chaperonin 4569653..4569946 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905428.1 CDS groEL NC_021151.1 4569990 4571636 D COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 4569990..4571636 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905429.1 CDS STU288_21750 NC_021151.1 4571880 4572233 D hypothetical protein 4571880..4572233 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905430.1 CDS STU288_21755 NC_021151.1 4572281 4573138 R hypothetical protein complement(4572281..4573138) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905431.1 CDS STU288_21760 NC_021151.1 4573420 4574448 R COG1509 Lysine 2,3-aminomutase; KamA family protein complement(4573420..4574448) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905432.1 CDS STU288_21765 NC_021151.1 4574489 4575055 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 4574489..4575055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905433.1 CDS STU288_21770 NC_021151.1 4575116 4575250 D entericidin A precursor 4575116..4575250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905434.1 CDS STU288_21775 NC_021151.1 4575358 4575504 D COG5510 Predicted small secreted protein; entericidin B membrane lipoprotein 4575358..4575504 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905435.1 CDS STU288_21780 NC_021151.1 4575535 4576122 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator complement(4575535..4576122) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905436.1 CDS STU288_21785 NC_021151.1 4576379 4576696 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein 4576379..4576696 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905437.1 CDS STU288_21790 NC_021151.1 4576713 4577246 R COG3040 Bacterial lipocalin; outer membrane lipoprotein Blc complement(4576713..4577246) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905438.1 CDS STU288_21795 NC_021151.1 4577358 4577717 R COG3080 Fumarate reductase subunit D; fumarate reductase subunit D complement(4577358..4577717) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905439.1 CDS STU288_21800 NC_021151.1 4577728 4578123 R COG3029 Fumarate reductase subunit C; fumarate reductase subunit C complement(4577728..4578123) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905440.1 CDS STU288_21805 NC_021151.1 4578134 4578868 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit complement(4578134..4578868) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905441.1 CDS STU288_21810 NC_021151.1 4578861 4580651 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(4578861..4580651) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905442.1 CDS STU288_21815 NC_021151.1 4580974 4581951 D COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II); poxB regulator PoxA 4580974..4581951 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905443.1 CDS STU288_21820 NC_021151.1 4582177 4583679 D COG0531 Amino acid transporters; inner membrane transporter YjeM 4582177..4583679 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905444.1 CDS STU288_21825 NC_021151.1 4583731 4584045 D putative inner membrane protein 4583731..4584045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905445.1 CDS STU288_21830 NC_021151.1 4584112 4587438 R COG3264 Small-conductance mechanosensitive channel; mechanosensitive channel protein complement(4584112..4587438) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905446.1 CDS psd NC_021151.1 4587457 4588425 R COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase complement(4587457..4588425) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905447.1 CDS STU288_21840 NC_021151.1 4588517 4589569 R COG1162 Predicted GTPases; GTPase RsgA complement(4588517..4589569) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905448.1 CDS STU288_21845 NC_021151.1 4589676 4590221 D COG1949 Oligoribonuclease (3'->5' exoribonuclease); oligoribonuclease 4589676..4590221 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905449.1 CDS STU288_21850 NC_021151.1 4590283 4591023 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine-binding periplasmic protein complement(4590283..4591023) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905450.1 CDS STU288_21855 NC_021151.1 4592108 4593247 R COG1600 Uncharacterized Fe-S protein; 4Fe-4S binding protein complement(4592108..4593247) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905451.1 CDS STU288_21860 NC_021151.1 4593246 4594793 D COG0062 Uncharacterized conserved protein; carbohydrate kinase 4593246..4594793 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905452.1 CDS STU288_21865 NC_021151.1 4594765 4595226 D COG0802 Predicted ATPase or kinase; ADP-binding protein 4594765..4595226 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905453.1 CDS STU288_21870 NC_021151.1 4595243 4596562 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase II 4595243..4596562 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905454.1 CDS mutL NC_021151.1 4596572 4598428 D COG0323 DNA mismatch repair enzyme (predicted ATPase); DNA mismatch repair protein 4596572..4598428 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905455.1 CDS miaA NC_021151.1 4598421 4599371 D COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4598421..4599371 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905456.1 CDS hfq NC_021151.1 4599454 4599762 D COG1923 Uncharacterized host factor I protein; RNA-binding protein Hfq 4599454..4599762 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905457.1 CDS STU288_21890 NC_021151.1 4599834 4601114 D COG2262 GTPases; GTPase HflX 4599834..4601114 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905458.1 CDS STU288_21895 NC_021151.1 4601329 4602588 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflK 4601329..4602588 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905459.1 CDS STU288_21900 NC_021151.1 4602591 4603595 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflC 4602591..4603595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905460.1 CDS STU288_21905 NC_021151.1 4603674 4603871 D COG3242 Uncharacterized protein conserved in bacteria; inner membrane protein 4603674..4603871 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905461.1 CDS STU288_21910 NC_021151.1 4603974 4605272 D COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 4603974..4605272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905462.1 CDS STU288_21915 NC_021151.1 4605479 4605904 D COG1959 Predicted transcriptional regulator; transcriptional repressor NsrR 4605479..4605904 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905463.1 CDS STU288_21920 NC_021151.1 4605942 4608380 D COG0557 Exoribonuclease R; exoribonuclease R 4605942..4608380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905464.1 CDS STU288_21925 NC_021151.1 4608471 4609202 D COG0566 rRNA methylases; 23S rRNA (guanosine-2'-O-)-methyltransferase 4608471..4609202 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905465.1 CDS STU288_21930 NC_021151.1 4609333 4609737 D COG3789 Uncharacterized protein conserved in bacteria; cytoplasmic protein 4609333..4609737 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905466.1 CDS STU288_21935 NC_021151.1 4609752 4610450 D COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; putative phage shock protein A 4609752..4610450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905467.1 CDS STU288_21940 NC_021151.1 4610450 4611520 D COG1226 Kef-type K+ transport systems, predicted NAD-binding component; inner-membrane protein 4610450..4611520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905468.1 CDS STU288_21945 NC_021151.1 4611517 4612176 D putative cytoplasmic protein 4611517..4612176 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905469.1 CDS STU288_21950 NC_021151.1 4612194 4612592 D COG3766 Predicted membrane protein; inner membrane protein 4612194..4612592 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905470.1 CDS STU288_21955 NC_021151.1 4612602 4613240 D hypothetical protein 4612602..4613240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905471.1 CDS STU288_21960 NC_021151.1 4613243 4614406 D COG0754 Glutathionylspermidine synthase; hypothetical protein 4613243..4614406 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905472.1 CDS STU288_21965 NC_021151.1 4614491 4616113 D COG1960 Acyl-CoA dehydrogenases; isovaleryl CoA dehydrogenase 4614491..4616113 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905473.1 CDS STU288_21970 NC_021151.1 4616158 4616433 R putative inner membrane protein complement(4616158..4616433) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905474.1 CDS STU288_21975 NC_021151.1 4616564 4616893 R biofilm stress and motility protein A complement(4616564..4616893) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905475.1 CDS STU288_21980 NC_021151.1 4617077 4617826 D COG1073 Hydrolases of the alpha/beta superfamily; esterase 4617077..4617826 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905476.1 CDS STU288_21985 NC_021151.1 4617823 4618578 R COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor UlaR complement(4617823..4618578) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905477.1 CDS STU288_21990 NC_021151.1 4618683 4619747 R COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; L-ascorbate 6-phosphate lactonase complement(4618683..4619747) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905478.1 CDS ulaA NC_021151.1 4620110 4621507 D COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 4620110..4621507 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905479.1 CDS STU288_22000 NC_021151.1 4621523 4621828 D COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system L-ascorbate-specific transporter subunit IIB 4621523..4621828 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905480.1 CDS STU288_22005 NC_021151.1 4621838 4622302 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system L-ascorbate-specific transporter subunit IIA 4621838..4622302 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905481.1 CDS ulaD NC_021151.1 4622316 4622966 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 4622316..4622966 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905482.1 CDS STU288_22015 NC_021151.1 4622976 4623830 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 4622976..4623830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905483.1 CDS sgaE NC_021151.1 4623830 4624516 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 4623830..4624516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905484.1 CDS STU288_22025 NC_021151.1 4624645 4624920 R putative outer membrane protein complement(4624645..4624920) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905485.1 CDS rpsF NC_021151.1 4625391 4625786 D COG0360 Ribosomal protein S6; 30S ribosomal protein S6 4625391..4625786 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905486.1 CDS STU288_22035 NC_021151.1 4625793 4626107 D COG2965 Primosomal replication protein N; primosomal replication protein N 4625793..4626107 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905487.1 CDS STU288_22040 NC_021151.1 4626112 4626339 D COG0238 Ribosomal protein S18; SSU ribosomal protein S18P 4626112..4626339 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905488.1 CDS rplI NC_021151.1 4626381 4626830 D COG0359 Ribosomal protein L9; 50S ribosomal protein L9 4626381..4626830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905489.1 CDS STU288_22050 NC_021151.1 4626978 4627904 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transporter ybhF 4626978..4627904 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905490.1 CDS STU288_22055 NC_021151.1 4627954 4628589 R COG3061 Cell envelope opacity-associated protein A; cell envelope opacity-associated protein complement(4627954..4628589) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905491.1 CDS STU288_22060 NC_021151.1 4628809 4629429 D COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; peptidyl-prolyl cis-trans isomerase 4628809..4629429 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905492.1 CDS STU288_22065 NC_021151.1 4629725 4631134 D COG1113 Gamma-aminobutyrate permease and related permeases; D-alanine/D-serine/glycine permease 4629725..4631134 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905493.1 CDS STU288_22070 NC_021151.1 4631246 4631908 R COG2846 Regulator of cell morphogenesis and NO signaling; iron-sulfur cluster repair di-iron protein complement(4631246..4631908) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905494.1 CDS STU288_22075 NC_021151.1 4632011 4632976 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Inner membrane protein ytfF complement(4632011..4632976) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905495.1 CDS STU288_22080 NC_021151.1 4633057 4633905 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(4633057..4633905) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905496.1 CDS STU288_22085 NC_021151.1 4633993 4634379 D COG1733 Predicted transcriptional regulators; Redox-sensing transcriptional regulator QorR 4633993..4634379 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905497.1 CDS cpdB NC_021151.1 4634437 4636380 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(4634437..4636380) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905498.1 CDS STU288_22095 NC_021151.1 4636648 4637388 D COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; adenosine-3'(2'),5'-bisphosphate nucleotidase 4636648..4637388 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905499.1 CDS STU288_22100 NC_021151.1 4637378 4637935 R COG3054 Predicted transcriptional regulator; hypothetical protein complement(4637378..4637935) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905500.1 CDS STU288_22105 NC_021151.1 4638262 4638468 D putative cytoplasmic protein 4638262..4638468 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905501.1 CDS STU288_22110 NC_021151.1 4638553 4639896 R COG1253 Hemolysins and related proteins containing CBS domains; UPF0053 protein complement(4638553..4639896) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905502.1 CDS STU288_22115 NC_021151.1 4640079 4640717 R COG0225 Peptide methionine sulfoxide reductase; methionine sulfoxide reductase A complement(4640079..4640717) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905503.1 CDS STU288_22120 NC_021151.1 4640930 4642663 D COG0729 Outer membrane protein; surface antigen (D15) 4640930..4642663 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905504.1 CDS STU288_22125 NC_021151.1 4642660 4646439 D COG2911 Uncharacterized protein conserved in bacteria; hypothetical protein 4642660..4646439 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905505.1 CDS STU288_22130 NC_021151.1 4646442 4646786 D COG2105 Uncharacterized conserved protein; UPF0131 protein ytfP 4646442..4646786 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905506.1 CDS STU288_22135 NC_021151.1 4646840 4648048 R COG0477 Permeases of the major facilitator superfamily; Vesicular glutamate transporter 3 VGluT3 complement(4646840..4648048) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905507.1 CDS STU288_22140 NC_021151.1 4648045 4649208 R COG3964 Predicted amidohydrolase; metallo-dependent hydrolase complement(4648045..4649208) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905508.1 CDS STU288_22145 NC_021151.1 4649618 4650148 R COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase complement(4649618..4650148) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905509.1 CDS STU288_22150 NC_021151.1 4650375 4651373 R COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase complement(4650375..4651373) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905510.1 CDS STU288_22155 NC_021151.1 4651548 4652927 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4651548..4652927 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905511.1 CDS STU288_22160 NC_021151.1 4653418 4654251 D COG1737 Transcriptional regulators; Bifunctional protein glk 4653418..4654251 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905512.1 CDS STU288_22165 NC_021151.1 4654302 4655735 R COG0477 Permeases of the major facilitator superfamily; sugar transporter complement(4654302..4655735) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905513.1 CDS STU288_22170 NC_021151.1 4656194 4657630 D COG0477 Permeases of the major facilitator superfamily; sugar transporter 4656194..4657630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905514.1 CDS STU288_22175 NC_021151.1 4657983 4658792 R COG3718 Uncharacterized enzyme involved in inositol metabolism; isomerase complement(4657983..4658792) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905515.1 CDS STU288_22180 NC_021151.1 4658817 4660322 R COG1012 NAD-dependent aldehyde dehydrogenases; methylmalonate-semialdehyde dehydrogenase complement(4658817..4660322) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905516.1 CDS STU288_22185 NC_021151.1 4660820 4661587 D COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding protein 4660820..4661587 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905517.1 CDS STU288_22190 NC_021151.1 4661862 4662767 D COG1082 Sugar phosphate isomerases/epimerases; 2-keto-myo-inositol dehydratase 4661862..4662767 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905518.1 CDS STU288_22195 NC_021151.1 4662786 4663796 D COG0673 Predicted dehydrogenases and related proteins; inositol 2-dehydrogenase 4662786..4663796 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905519.1 CDS STU288_22200 NC_021151.1 4663893 4665236 D COG5520 O-Glycosyl hydrolase; O-glycosyl hydrolase 4663893..4665236 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905520.1 CDS STU288_22205 NC_021151.1 4665237 4666070 D COG1082 Sugar phosphate isomerases/epimerases; myo-inositol catabolism protein 4665237..4666070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905521.1 CDS STU288_22210 NC_021151.1 4666067 4667233 R COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter complement(4666067..4667233) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905522.1 CDS STU288_22215 NC_021151.1 4667294 4669225 R COG0524 Sugar kinases, ribokinase family; IolC protein complement(4667294..4669225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905523.1 CDS STU288_22220 NC_021151.1 4669420 4669533 R hypothetical protein complement(4669420..4669533) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905524.1 CDS STU288_22225 NC_021151.1 4669648 4671588 D COG3962 Acetolactate synthase; putative thiamine pyrophosphate-requiringenzyme 4669648..4671588 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905525.1 CDS STU288_22230 NC_021151.1 4671817 4672791 D COG0673 Predicted dehydrogenases and related proteins; dehydrogenase 4671817..4672791 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905526.1 CDS STU288_22235 NC_021151.1 4672864 4674090 D COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate permease 4672864..4674090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905527.1 CDS STU288_22240 NC_021151.1 4674251 4675066 D COG4130 Predicted sugar epimerase; xylose isomerase 4674251..4675066 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905528.1 CDS STU288_22245 NC_021151.1 4675119 4676003 D COG1082 Sugar phosphate isomerases/epimerases; endonuclease 4675119..4676003 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905529.1 CDS STU288_22250 NC_021151.1 4676059 4676610 R COG3028 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4676059..4676610) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905530.1 CDS STU288_22255 NC_021151.1 4676718 4678058 D COG0312 Predicted Zn-dependent proteases and their inactivated homologs; peptidase PmbA 4676718..4678058 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905531.1 CDS STU288_22260 NC_021151.1 4678157 4678543 D COG3783 Soluble cytochrome b562; cytochrome b562 4678157..4678543 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905532.1 CDS STU288_22265 NC_021151.1 4678830 4679159 D putative cytoplasmic protein 4678830..4679159 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905533.1 CDS STU288_22270 NC_021151.1 4679170 4679532 D hypothetical protein 4679170..4679532 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905534.1 CDS STU288_22275 NC_021151.1 4679535 4679834 D putative cytoplasmic protein 4679535..4679834 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905535.1 CDS STU288_22280 NC_021151.1 4679857 4680633 D hypothetical protein 4679857..4680633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905536.1 CDS STU288_22285 NC_021151.1 4680645 4681289 D hypothetical protein 4680645..4681289 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905537.1 CDS STU288_22290 NC_021151.1 4681348 4682481 D COG3964 Predicted amidohydrolase; dihydroorotase 4681348..4682481 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905538.1 CDS STU288_22295 NC_021151.1 4682465 4683583 D COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; hypothetical protein 4682465..4683583 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905539.1 CDS STU288_22300 NC_021151.1 4683580 4684320 D COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein 4683580..4684320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905540.1 CDS STU288_22305 NC_021151.1 4684337 4686250 D COG3711 Transcriptional antiterminator; putative BglB-family transcriptional antiterminator 4684337..4686250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905541.1 CDS STU288_22310 NC_021151.1 4686328 4686570 D COG3077 DNA-damage-inducible protein J; bifunctional antitoxin/transcriptional repressor RelB 4686328..4686570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905542.1 CDS STU288_22315 NC_021151.1 4686560 4686844 D COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; toxin 4686560..4686844 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905543.1 CDS nrdG NC_021151.1 4686848 4687312 R COG0602 Organic radical activating enzymes; anaerobic ribonucleotide reductase-activating protein complement(4686848..4687312) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905544.1 CDS STU288_22325 NC_021151.1 4687433 4689571 R COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; anaerobic ribonucleoside triphosphate reductase complement(4687433..4689571) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905545.1 CDS STU288_22330 NC_021151.1 4689980 4691632 R COG0366 Glycosidases; trehalose-6-phosphate hydrolase complement(4689980..4691632) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905548.1 CDS treR NC_021151.1 4693237 4694184 R COG1609 Transcriptional regulators; trehalose repressor complement(4693237..4694184) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905549.1 CDS STU288_22350 NC_021151.1 4694568 4697276 D COG0474 Cation transport ATPase; magnesium-transporting ATPase MgtA 4694568..4697276 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905550.1 CDS STU288_22355 NC_021151.1 4697392 4697838 R COG2801 Transposase and inactivated derivatives; hypothetical protein complement(4697392..4697838) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905551.1 CDS STU288_22360 NC_021151.1 4697913 4698299 R COG0251 Putative translation initiation inhibitor, yjgF family; Protein tdcF complement(4697913..4698299) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905552.1 CDS STU288_22365 NC_021151.1 4698376 4698837 R COG1781 Aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit complement(4698376..4698837) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905553.1 CDS pyrB NC_021151.1 4698850 4699785 R COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit complement(4698850..4699785) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905554.1 CDS STU288_22375 NC_021151.1 4699821 4699922 R pyrBI operon leader peptide complement(4699821..4699922) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905555.1 CDS STU288_22380 NC_021151.1 4700012 4700500 R COG1438 Arginine repressor; Arginine repressor complement(4700012..4700500) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905556.1 CDS STU288_22385 NC_021151.1 4700503 4700601 D hypothetical protein 4700503..4700601 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905557.1 CDS STU288_22390 NC_021151.1 4700687 4702090 R COG1288 Predicted membrane protein; hypothetical protein complement(4700687..4702090) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905558.1 CDS STU288_22395 NC_021151.1 4702146 4703150 R COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase complement(4702146..4703150) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905559.1 CDS STU288_22400 NC_021151.1 4703262 4704194 R COG0549 Carbamate kinase; carbamate kinase complement(4703262..4704194) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905560.1 CDS STU288_22405 NC_021151.1 4704205 4705425 R COG2235 Arginine deiminase; arginine deiminase complement(4704205..4705425) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905561.1 CDS STU288_22410 NC_021151.1 4706101 4706553 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 4706101..4706553 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905562.1 CDS STU288_22415 NC_021151.1 4706627 4707631 R COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase subunit I complement(4706627..4707631) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905563.1 CDS STU288_22420 NC_021151.1 4707797 4708213 D COG3076 Uncharacterized protein conserved in bacteria; RNase E inhibitor protein 4707797..4708213 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905564.1 CDS STU288_22425 NC_021151.1 4708273 4709037 D COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; tRNA hydroxylase 4708273..4709037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905565.1 CDS STU288_22430 NC_021151.1 4709271 4709759 R hypothetical protein complement(4709271..4709759) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905566.1 CDS STU288_22435 NC_021151.1 4709866 4710369 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(4709866..4710369) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905567.1 CDS STU288_22440 NC_021151.1 4710564 4711751 D COG4269 Predicted membrane protein; inner membrane protein 4710564..4711751 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905568.1 CDS valS NC_021151.1 4711893 4714748 R COG0525 Valyl-tRNA synthetase; valyl-tRNA ligase complement(4711893..4714748) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905569.1 CDS STU288_22450 NC_021151.1 4714748 4715191 R COG2927 DNA polymerase III, chi subunit; DNA polymerase III subunit chi complement(4714748..4715191) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905570.1 CDS STU288_22455 NC_021151.1 4715328 4716839 R COG0260 Leucyl aminopeptidase; multifunctional aminopeptidase A complement(4715328..4716839) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905571.1 CDS STU288_22460 NC_021151.1 4717234 4718334 D COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease LptF 4717234..4718334 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905572.1 CDS STU288_22465 NC_021151.1 4718334 4719416 D COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease 4718334..4719416 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905573.1 CDS STU288_22470 NC_021151.1 4719534 4719629 D hypothetical protein 4719534..4719629 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905574.1 CDS STU288_22475 NC_021151.1 4719611 4720609 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator IdnR complement(4719611..4720609) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905575.1 CDS STU288_22480 NC_021151.1 4720673 4721992 R COG2610 H+/gluconate symporter and related permeases; Gnt-II system L-idonate transporter IdnT complement(4720673..4721992) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905576.1 CDS STU288_22485 NC_021151.1 4722054 4722818 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); gluconate 5-dehydrogenase complement(4722054..4722818) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905577.1 CDS STU288_22490 NC_021151.1 4722843 4723874 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-idonate 5-dehydrogenase complement(4722843..4723874) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905578.1 CDS idnK NC_021151.1 4724091 4724621 D COG3265 Gluconate kinase; D-gluconate kinase 4724091..4724621 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905579.1 CDS STU288_22500 NC_021151.1 4724649 4725668 R COG1064 Zn-dependent alcohol dehydrogenases; Alcohol dehydrogenase complement(4724649..4725668) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905580.1 CDS STU288_22505 NC_021151.1 4726194 4726481 D COG0582 Integrase; putative integrase 4726194..4726481 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905581.1 CDS STU288_22510 NC_021151.1 4726843 4730358 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; superfamily I DNA helicase 4726843..4730358 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905582.1 CDS STU288_22515 NC_021151.1 4730449 4731444 D COG4127 Uncharacterized conserved protein; restriction endonuclease 4730449..4731444 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905583.1 CDS STU288_22520 NC_021151.1 4731557 4733641 R COG4930 Predicted ATP-dependent Lon-type protease; ATP-dependent Lon protease complement(4731557..4733641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905584.1 CDS STU288_22525 NC_021151.1 4733652 4736249 R hypothetical protein complement(4733652..4736249) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905585.1 CDS STU288_22530 NC_021151.1 4736252 4737064 R putative cytoplasmic protein complement(4736252..4737064) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905586.1 CDS STU288_22535 NC_021151.1 4737051 4738142 R COG3839 ABC-type sugar transport systems, ATPase components; sugar/spermidine/putrescine ABC transporter ATPase complement(4737051..4738142) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905587.1 CDS STU288_22540 NC_021151.1 4738142 4741819 R COG1002 Type II restriction enzyme, methylase subunits; putative type II restriction enzyme methylase subunit complement(4738142..4741819) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905588.1 CDS STU288_22545 NC_021151.1 4741865 4745506 R putative DNA repair ATPase complement(4741865..4745506) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905589.1 CDS STU288_22550 NC_021151.1 4745518 4746120 R hypothetical protein complement(4745518..4746120) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905590.1 CDS STU288_22555 NC_021151.1 4746117 4746725 R inner membrane protein complement(4746117..4746725) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905591.1 CDS STU288_22560 NC_021151.1 4746912 4747226 R hypothetical protein complement(4746912..4747226) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905592.1 CDS STU288_22565 NC_021151.1 4747545 4748261 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(4747545..4748261) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905593.1 CDS STU288_22570 NC_021151.1 4748821 4749567 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(4748821..4749567) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905594.1 CDS STU288_22575 NC_021151.1 4750457 4750714 R COG3811 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4750457..4750714) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905595.1 CDS STU288_22580 NC_021151.1 4751203 4751811 D COG4332 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 4751203..4751811 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905596.1 CDS STU288_22585 NC_021151.1 4752063 4753058 D COG1637 Predicted nuclease of the RecB family; hypothetical protein 4752063..4753058 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905597.1 CDS STU288_22590 NC_021151.1 4753334 4754245 D hypothetical protein 4753334..4754245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905598.1 CDS STU288_22595 NC_021151.1 4754450 4754911 D COG3439 Uncharacterized conserved protein; hypothetical protein 4754450..4754911 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905599.1 CDS STU288_22600 NC_021151.1 4754908 4755582 R COG0412 Dienelactone hydrolase and related enzymes; hypothetical protein complement(4754908..4755582) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905600.1 CDS STU288_22605 NC_021151.1 4755932 4756705 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor UxuR 4755932..4756705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905601.1 CDS STU288_22610 NC_021151.1 4756706 4757719 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase II complement(4756706..4757719) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905602.1 CDS STU288_22615 NC_021151.1 4758521 4758967 D COG3157 Hemolysin-coregulated protein (uncharacterized); hypothetical protein 4758521..4758967 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905603.1 CDS STU288_22620 NC_021151.1 4759206 4759940 D COG1794 Aspartate racemase; aspartate racemase 4759206..4759940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905604.1 CDS STU288_22625 NC_021151.1 4759946 4760854 R COG0583 Transcriptional regulator; cell density-dependent motility repressor complement(4759946..4760854) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905605.1 CDS STU288_22630 NC_021151.1 4760973 4762145 R COG0044 Dihydroorotase and related cyclic amidohydrolases; isoaspartyl dipeptidase complement(4760973..4762145) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905606.1 CDS STU288_22635 NC_021151.1 4762158 4762619 R COG0700 Uncharacterized membrane protein; hypothetical protein complement(4762158..4762619) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905607.1 CDS STU288_22640 NC_021151.1 4762616 4763287 R COG3314 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4762616..4763287) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905608.1 CDS STU288_22645 NC_021151.1 4764160 4765344 R COG0477 Permeases of the major facilitator superfamily; putative sugar transporter complement(4764160..4765344) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905609.1 CDS STU288_22650 NC_021151.1 4765564 4766835 R COG2733 Predicted membrane protein; hypothetical protein complement(4765564..4766835) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905610.1 CDS STU288_22655 NC_021151.1 4766922 4768163 R COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtM complement(4766922..4768163) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905611.1 CDS STU288_22660 NC_021151.1 4768642 4769157 D inner membrane protein 4768642..4769157 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905612.1 CDS STU288_22665 NC_021151.1 4769154 4769267 R hypothetical protein complement(4769154..4769267) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905613.1 CDS STU288_22670 NC_021151.1 4769338 4770708 D COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase 4769338..4770708 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905614.1 CDS STU288_22675 NC_021151.1 4770913 4771077 D putative cytoplasmic protein 4770913..4771077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905615.1 CDS STU288_22680 NC_021151.1 4771152 4771853 R putative inner membrane protein complement(4771152..4771853) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905616.1 CDS STU288_22685 NC_021151.1 4771927 4772259 R endoribonuclease SymE complement(4771927..4772259) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905617.1 CDS STU288_22690 NC_021151.1 4772486 4773895 R COG0732 Restriction endonuclease S subunits; type I restriction enzyme specificity protein complement(4772486..4773895) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905618.1 CDS STU288_22695 NC_021151.1 4773892 4775481 R COG0286 Type I restriction-modification system methyltransferase subunit; DNA methylase M complement(4773892..4775481) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905619.1 CDS hsdR NC_021151.1 4775639 4779148 R COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme EcoKI subunit R complement(4775639..4779148) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905620.1 CDS STU288_22705 NC_021151.1 4779346 4780260 D COG1715 Restriction endonuclease; restriction endonuclease 4779346..4780260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905621.1 CDS STU288_22710 NC_021151.1 4780529 4780816 D COG2929 Uncharacterized protein conserved in bacteria; hypothetical protein 4780529..4780816 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905622.1 CDS STU288_22715 NC_021151.1 4780803 4781105 D COG3514 Uncharacterized protein conserved in bacteria; toxin-antitoxin system, antitoxin component 4780803..4781105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905623.1 CDS STU288_22720 NC_021151.1 4781180 4782136 R COG0523 Putative GTPases (G3E family); GTP-binding protein YjiA complement(4781180..4782136) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905624.1 CDS STU288_22725 NC_021151.1 4782147 4782350 R COG2879 Uncharacterized small protein; hypothetical protein complement(4782147..4782350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905625.1 CDS STU288_22730 NC_021151.1 4782445 4784595 R COG1966 Carbon starvation protein, predicted membrane protein; putative carbon starvation protein complement(4782445..4784595) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905628.1 CDS STU288_22745 NC_021151.1 4786946 4789711 D COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; Transcriptional regulatory protein levR 4786946..4789711 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905629.1 CDS STU288_22750 NC_021151.1 4789813 4790235 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS permease 4789813..4790235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905630.1 CDS STU288_22755 NC_021151.1 4790250 4790711 D COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system transporter subunit IIB 4790250..4790711 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905631.1 CDS STU288_22760 NC_021151.1 4790737 4791516 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 4790737..4791516 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905632.1 CDS STU288_22765 NC_021151.1 4791494 4792342 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; fructose permease iid component 4791494..4792342 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905633.1 CDS STU288_22770 NC_021151.1 4792355 4793416 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; Glucosamine-fructose-6-P aminotransferase 4792355..4793416 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905634.1 CDS STU288_22775 NC_021151.1 4793434 4794444 D COG2222 Predicted phosphosugar isomerases; Glucosamine-fructose-6-P aminotransferase 4793434..4794444 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905635.1 CDS STU288_22780 NC_021151.1 4794578 4796869 R COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; phosphoglycerol transferase I complement(4794578..4796869) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905636.1 CDS STU288_22785 NC_021151.1 4797152 4797613 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; hypothetical protein complement(4797152..4797613) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905637.1 CDS STU288_22790 NC_021151.1 4797671 4798408 R COG1484 DNA replication protein; DNA replication protein DnaC complement(4797671..4798408) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905638.1 CDS STU288_22795 NC_021151.1 4798411 4798950 R primosomal protein DnaI complement(4798411..4798950) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905639.1 CDS STU288_22800 NC_021151.1 4799043 4799516 R COG3610 Uncharacterized conserved protein; hypothetical protein complement(4799043..4799516) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905640.1 CDS STU288_22805 NC_021151.1 4799507 4800283 R COG2966 Uncharacterized conserved protein; hypothetical protein complement(4799507..4800283) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905641.1 CDS STU288_22810 NC_021151.1 4800996 4801721 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Putative regulator 4800996..4801721 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905642.1 CDS STU288_22815 NC_021151.1 4801733 4802356 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator BglJ 4801733..4802356 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905643.1 CDS STU288_22820 NC_021151.1 4802407 4802865 R COG2606 Uncharacterized conserved protein; Prolyl-tRNA synthetase Proline-tRNA ligase complement(4802407..4802865) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905644.1 CDS STU288_22825 NC_021151.1 4803016 4803804 R COG4114 Uncharacterized Fe-S protein; ferric iron reductase involved in ferric hydroximate transport complement(4803016..4803804) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905645.1 CDS STU288_22830 NC_021151.1 4803925 4804989 R COG2199 FOG: GGDEF domain; hypothetical protein complement(4803925..4804989) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905646.1 CDS STU288_22835 NC_021151.1 4805240 4805476 D putative inner membrane protein 4805240..4805476 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905647.1 CDS rsmC NC_021151.1 4806018 4807046 R COG2813 16S RNA G1207 methylase RsmC; 16S ribosomal RNA m2G1207 methyltransferase complement(4806018..4807046) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905648.1 CDS STU288_22845 NC_021151.1 4807149 4807586 D COG3050 DNA polymerase III, psi subunit; DNA polymerase III subunit psi 4807149..4807586 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905649.1 CDS rimI NC_021151.1 4807531 4807977 D COG0456 Acetyltransferases; ribosomal-protein-alanine N-acetyltransferase 4807531..4807977 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905650.1 CDS STU288_22855 NC_021151.1 4807999 4808676 D COG1011 Predicted hydrolase (HAD superfamily); dUMP phosphatase 4807999..4808676 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905651.1 CDS prfC NC_021151.1 4808768 4810357 D COG4108 Peptide chain release factor RF-3; peptide chain release factor 3 4808768..4810357 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905652.1 CDS STU288_22865 NC_021151.1 4810759 4811376 D COG2823 Predicted periplasmic or secreted lipoprotein; periplasmic protein 4810759..4811376 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905653.1 CDS STU288_22870 NC_021151.1 4811505 4811666 D hypothetical protein 4811505..4811666 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905654.1 CDS STU288_22875 NC_021151.1 4811790 4812863 D COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; patatin 4811790..4812863 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905655.1 CDS STU288_22880 NC_021151.1 4812860 4813633 D COG0084 Mg-dependent DNase; deoxyribonuclease YjjV 4812860..4813633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905656.1 CDS STU288_22885 NC_021151.1 4813666 4814529 R COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase activating enzyme complement(4813666..4814529) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905657.1 CDS STU288_22890 NC_021151.1 4814501 4816051 R COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; hypothetical protein complement(4814501..4816051) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905658.1 CDS STU288_22895 NC_021151.1 4816311 4817090 D COG0274 Deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 4816311..4817090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905659.1 CDS deoA NC_021151.1 4817214 4818536 D COG0213 Thymidine phosphorylase; thymidine phosphorylase 4817214..4818536 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905660.1 CDS STU288_22905 NC_021151.1 4818588 4819811 D COG1015 Phosphopentomutase; phosphopentomutase 4818588..4819811 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905661.1 CDS deoD NC_021151.1 4820021 4820740 D COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 4820021..4820740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905662.1 CDS STU288_22915 NC_021151.1 4820778 4821350 R hypothetical protein complement(4820778..4821350) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905663.1 CDS STU288_22920 NC_021151.1 4821347 4823755 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein complement(4821347..4823755) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905664.1 CDS STU288_22925 NC_021151.1 4823769 4824476 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein complement(4823769..4824476) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905665.1 CDS STU288_22930 NC_021151.1 4824554 4825243 R hypothetical protein complement(4824554..4825243) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905666.1 CDS STU288_22935 NC_021151.1 4825291 4825980 R hypothetical protein complement(4825291..4825980) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905667.1 CDS lplA NC_021151.1 4826293 4827309 R COG0095 Lipoate-protein ligase A; lipoate-protein ligase A complement(4826293..4827309) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905668.1 CDS STU288_22945 NC_021151.1 4827343 4827987 R COG3726 Uncharacterized membrane protein affecting hemolysin expression; hypothetical protein complement(4827343..4827987) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905669.1 CDS serB NC_021151.1 4828104 4829072 D COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 4828104..4829072 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905670.1 CDS STU288_22955 NC_021151.1 4829156 4830538 D COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 4829156..4830538 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905671.1 CDS STU288_22960 NC_021151.1 4830689 4831921 D COG1396 Predicted transcriptional regulators; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 4830689..4831921 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905672.1 CDS STU288_22965 NC_021151.1 4832039 4833706 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(4832039..4833706) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905673.1 CDS STU288_22970 NC_021151.1 4833915 4835852 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 4833915..4835852 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905674.1 CDS STU288_22975 NC_021151.1 4835910 4836236 D COG2973 Trp operon repressor; Trp operon repressor 4835910..4836236 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905675.1 CDS STU288_22980 NC_021151.1 4836338 4836853 R COG1986 Uncharacterized conserved protein; inosine/xanthosine triphosphatase complement(4836338..4836853) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905676.1 CDS STU288_22985 NC_021151.1 4836902 4837549 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 4836902..4837549 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905677.1 CDS STU288_22990 NC_021151.1 4837546 4838415 R COG2207 AraC-type DNA-binding domain-containing proteins; right oriC-binding transcriptional activator complement(4837546..4838415) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905678.1 CDS STU288_22995 NC_021151.1 4838627 4839100 D COG3045 Uncharacterized protein conserved in bacteria; hypothetical protein 4838627..4839100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905679.1 CDS STU288_23000 NC_021151.1 4839113 4839802 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding response regulator CreB 4839113..4839802 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905680.1 CDS STU288_23005 NC_021151.1 4839802 4841226 D COG0642 Signal transduction histidine kinase; sensory histidine kinase CreC 4839802..4841226 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905681.1 CDS STU288_23010 NC_021151.1 4841284 4842633 D COG4452 Inner membrane protein involved in colicin E2 resistance; hypothetical protein 4841284..4842633 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905682.1 CDS STU288_23015 NC_021151.1 4842691 4843776 R COG3539 P pilus assembly protein, pilin FimA; major fimbrial protein SthE complement(4842691..4843776) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905683.1 CDS STU288_23020 NC_021151.1 4843817 4844374 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein SthD complement(4843817..4844374) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905684.1 CDS STU288_23025 NC_021151.1 4844392 4846929 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein SthC complement(4844392..4846929) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905685.1 CDS STU288_23030 NC_021151.1 4846975 4847658 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone SthB complement(4846975..4847658) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905686.1 CDS STU288_23035 NC_021151.1 4847729 4848274 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein SthA complement(4847729..4848274) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905687.1 CDS STU288_23040 NC_021151.1 4848613 4849284 R COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; hypothetical protein complement(4848613..4849284) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905688.1 CDS STU288_23045 NC_021151.1 4849669 4849983 R hypothetical protein complement(4849669..4849983) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905689.1 CDS STU288_23050 NC_021151.1 4850250 4850966 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(4850250..4850966) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905690.1 CDS STU288_23055 NC_021151.1 4851602 4852288 D COG0565 rRNA methylase; RNA methyltransferase 4851602..4852288 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905735.1 CDS STU288_1p00005 NC_021155.1 84 1025 R hypothetical protein complement(84..1025) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905736.1 CDS STU288_1p00010 NC_021155.1 1090 1356 R hypothetical protein complement(1090..1356) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905737.1 CDS STU288_1p00015 NC_021155.1 1987 2190 D hypothetical protein 1987..2190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905738.1 CDS STU288_1p00020 NC_021155.1 2172 2471 D hypothetical protein 2172..2471 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905739.1 CDS STU288_1p00025 NC_021155.1 2484 2585 R hypothetical protein complement(2484..2585) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905740.1 CDS STU288_1p00030 NC_021155.1 2611 3111 R COG4734 Antirestriction protein; hypothetical protein complement(2611..3111) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905741.1 CDS STU288_1p00035 NC_021155.1 3242 3412 D hypothetical protein 3242..3412 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905742.1 CDS STU288_1p00040 NC_021155.1 3574 4170 R hypothetical protein complement(3574..4170) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905743.1 CDS STU288_1p00045 NC_021155.1 4167 4886 R plasmid SOS inhibition protein A complement(4167..4886) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905744.1 CDS psiB NC_021155.1 4883 5317 R plasmid SOS inhibition protein B complement(4883..5317) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905745.1 CDS STU288_1p00055 NC_021155.1 5372 7330 R COG1475 Predicted transcriptional regulators; hypothetical protein complement(5372..7330) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905746.1 CDS STU288_1p00060 NC_021155.1 7389 7622 R hypothetical protein complement(7389..7622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905747.1 CDS STU288_1p00065 NC_021155.1 7680 8207 R COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein complement(7680..8207) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905748.1 CDS STU288_1p00070 NC_021155.1 8438 8566 R hypothetical protein complement(8438..8566) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905749.1 CDS STU288_1p00075 NC_021155.1 8977 9168 R hypothetical protein complement(8977..9168) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905750.1 CDS STU288_1p00080 NC_021155.1 9165 9587 R hypothetical protein complement(9165..9587) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905751.1 CDS STU288_1p00085 NC_021155.1 9634 10059 R putative antirestriction protein complement(9634..10059) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905752.1 CDS STU288_1p00090 NC_021155.1 10191 10361 D hypothetical protein 10191..10361 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905753.1 CDS STU288_1p00095 NC_021155.1 10477 11247 R hypothetical protein complement(10477..11247) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905754.1 CDS STU288_1p00100 NC_021155.1 11298 11732 R hypothetical protein complement(11298..11732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905755.1 CDS STU288_1p00105 NC_021155.1 11744 11965 R hypothetical protein complement(11744..11965) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905756.1 CDS STU288_1p00110 NC_021155.1 11966 12649 R COG0863 DNA modification methylase; methylase complement(11966..12649) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905757.1 CDS STU288_1p00115 NC_021155.1 12726 12977 R hypothetical protein complement(12726..12977) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905758.1 CDS STU288_1p00120 NC_021155.1 13035 13961 R hypothetical protein complement(13035..13961) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905759.1 CDS STU288_1p00125 NC_021155.1 14355 14603 D hypothetical protein 14355..14603 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905760.1 CDS STU288_1p00130 NC_021155.1 14600 15037 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Error-prone repair protein UmuD 14600..15037 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905761.1 CDS umuC NC_021155.1 15037 16311 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 15037..16311 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905762.1 CDS STU288_1p00140 NC_021155.1 16313 16729 R plasmid stability protein complement(16313..16729) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905763.1 CDS STU288_1p00145 NC_021155.1 16722 17702 R COG0443 Molecular chaperone; plasmid segregation protein ParM complement(16722..17702) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905764.1 CDS STU288_1p00150 NC_021155.1 18116 18424 R putative 60 kDa chaperonin complement(18116..18424) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905765.1 CDS STU288_1p00155 NC_021155.1 18511 19155 R COG1192 ATPases involved in chromosome partitioning; putative plasmid partitioning and stability protein complement(18511..19155) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905766.1 CDS STU288_1p00160 NC_021155.1 19335 20114 R COG0582 Integrase; resolvase complement(19335..20114) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905767.1 CDS STU288_1p00165 NC_021155.1 20116 20568 R hypothetical protein complement(20116..20568) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905768.1 CDS STU288_1p00170 NC_021155.1 20673 20846 R hypothetical protein complement(20673..20846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905769.1 CDS STU288_1p00175 NC_021155.1 21095 21583 D hypothetical protein 21095..21583 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905770.1 CDS STU288_1p00180 NC_021155.1 21834 21947 R hypothetical protein complement(21834..21947) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905771.1 CDS STU288_1p00185 NC_021155.1 22067 22363 D hypothetical protein 22067..22363 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905772.1 CDS STU288_1p00190 NC_021155.1 22869 23846 D DNA replication 22869..23846 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905773.1 CDS STU288_1p00195 NC_021155.1 24105 24287 R COG0582 Integrase; resolvase complement(24105..24287) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905774.1 CDS STU288_1p00200 NC_021155.1 24718 24927 R COG3111 Uncharacterized conserved protein; hypothetical protein complement(24718..24927) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905775.1 CDS STU288_1p00205 NC_021155.1 25818 26120 D fimbriae biosynthesis regulatory protein 25818..26120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905776.1 CDS STU288_1p00210 NC_021155.1 26395 26913 D fimbrial protein PefA 26395..26913 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905777.1 CDS STU288_1p00215 NC_021155.1 26941 27057 R hypothetical protein complement(26941..27057) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905778.1 CDS STU288_1p00220 NC_021155.1 27141 29549 D COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein PefC 27141..29549 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905779.1 CDS STU288_1p00225 NC_021155.1 29542 30234 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein PefD 29542..30234 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905780.1 CDS STU288_1p00230 NC_021155.1 30252 30806 D putative outer membrane protein 30252..30806 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905781.1 CDS STU288_1p00235 NC_021155.1 32366 32578 D plasmid-encoded fimbriae 32366..32578 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905782.1 CDS STU288_1p00240 NC_021155.1 32563 32913 D COG2771 DNA-binding HTH domain-containing proteins; putative luxR family bacterial regulatory protein 32563..32913 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905783.1 CDS STU288_1p00245 NC_021155.1 32892 33035 D hypothetical protein 32892..33035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905784.1 CDS STU288_1p00250 NC_021155.1 33248 34819 R COG3436 Transposase and inactivated derivatives; issfl4 orf3 complement(33248..34819) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905785.1 CDS STU288_1p00255 NC_021155.1 34839 35186 R COG3436 Transposase and inactivated derivatives; putative transposase subunit complement(34839..35186) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905786.1 CDS STU288_1p00260 NC_021155.1 35186 35863 R COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA complement(35186..35863) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905787.1 CDS STU288_1p00265 NC_021155.1 35904 36518 D COG0526 Thiol-disulfide isomerase and thioredoxins; putative thiol-disulfide isomerase or thioredoxin 35904..36518 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905788.1 CDS STU288_1p00270 NC_021155.1 36508 36654 D hypothetical protein 36508..36654 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905789.1 CDS STU288_1p00275 NC_021155.1 36705 37550 D COG3204 Uncharacterized protein conserved in bacteria; putative outer membrane protein 36705..37550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905790.1 CDS STU288_1p00280 NC_021155.1 37640 38197 D COG3637 Opacity protein and related surface antigens; resistance to complement killing 37640..38197 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905791.1 CDS STU288_1p00285 NC_021155.1 38251 38370 D hypothetical protein 38251..38370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905792.1 CDS STU288_1p00290 NC_021155.1 38464 39222 D COG2207 AraC-type DNA-binding domain-containing proteins; putative bacterial regulatory protein (AraC family) 38464..39222 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905793.1 CDS STU288_1p00295 NC_021155.1 39319 39459 R COG3204 Uncharacterized protein conserved in bacteria; outer membrane protein complement(39319..39459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905794.1 CDS STU288_1p00300 NC_021155.1 39508 39639 D hypothetical protein 39508..39639 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905795.1 CDS STU288_1p00305 NC_021155.1 40173 40388 R hypothetical protein complement(40173..40388) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905796.1 CDS STU288_1p00310 NC_021155.1 40400 41281 R replication protein complement(40400..41281) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905797.1 CDS STU288_1p00315 NC_021155.1 41262 41339 R RepA leader peptide Tap complement(41262..41339) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905798.1 CDS STU288_1p00320 NC_021155.1 41589 41834 R replication protein complement(41589..41834) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905799.1 CDS STU288_1p00325 NC_021155.1 42034 42477 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; hypothetical protein complement(42034..42477) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905800.1 CDS STU288_1p00330 NC_021155.1 42643 42795 R putative cytoplasmic protein complement(42643..42795) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905801.1 CDS STU288_1p00335 NC_021155.1 42811 43095 R putative cytoplasmic protein complement(42811..43095) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905802.1 CDS STU288_1p00340 NC_021155.1 43210 43773 R conjugal transfer fertility inhibition protein FinO complement(43210..43773) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905803.1 CDS STU288_1p00345 NC_021155.1 43828 44568 R conjugal transfer pilus acetylation protein TraX complement(43828..44568) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905804.1 CDS STU288_1p00350 NC_021155.1 44588 49846 R COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; conjugal transfer nickase/helicase TraI complement(44588..49846) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905805.1 CDS STU288_1p00355 NC_021155.1 49928 50155 D COG4456 Virulence-associated protein and related proteins; cytoplasmic protein 49928..50155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905806.1 CDS STU288_1p00360 NC_021155.1 50155 50553 D COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein 50155..50553 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905807.1 CDS STU288_1p00365 NC_021155.1 50562 52823 R COG3505 Type IV secretory pathway, VirD4 components; conjugal transfer protein TraD complement(50562..52823) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905808.1 CDS STU288_1p00370 NC_021155.1 53200 53931 R conjugal transfer surface exclusion protein TraT complement(53200..53931) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905809.1 CDS STU288_1p00375 NC_021155.1 53967 54455 R conjugative transfer surface exclusion protein complement(53967..54455) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905810.1 CDS STU288_1p00380 NC_021155.1 54477 57299 R conjugal transfer mating pair stabilization protein TraG complement(54477..57299) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905811.1 CDS STU288_1p00385 NC_021155.1 57296 58678 R conjugal transfer pilus assembly protein TraH complement(57296..58678) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905812.1 CDS STU288_1p00390 NC_021155.1 58668 59216 R conjugal transfer protein TrbB complement(58668..59216) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905813.1 CDS STU288_1p00395 NC_021155.1 59203 59496 R conjugal transfer pilin chaperone TraQ complement(59203..59496) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905814.1 CDS STU288_1p00400 NC_021155.1 59710 60459 R conjugal pilus assembly protein TraF complement(59710..60459) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905815.1 CDS STU288_1p00405 NC_021155.1 60471 60677 R conjugal transfer protein TrbE complement(60471..60677) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905816.1 CDS STU288_1p00410 NC_021155.1 60697 62523 R conjugal transfer mating pair stabilization protein TraN complement(60697..62523) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905817.1 CDS STU288_1p00415 NC_021155.1 62520 62939 R putative HNH endonuclease complement(62520..62939) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905818.1 CDS STU288_1p00420 NC_021155.1 62976 63614 R conjugal transfer pilus assembly protein TrbC complement(62976..63614) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905819.1 CDS STU288_1p00425 NC_021155.1 63599 63901 R conjugal transfer protein complement(63599..63901) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905820.1 CDS STU288_1p00430 NC_021155.1 63926 64918 R conjugal transfer pilus assembly protein TraU complement(63926..64918) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905821.1 CDS STU288_1p00435 NC_021155.1 64915 65547 R conjugal transfer pilus assembly protein TraW complement(64915..65547) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905822.1 CDS STU288_1p00440 NC_021155.1 65544 65930 R conjugal transfer protein TrbI complement(65544..65930) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905823.1 CDS STU288_1p00445 NC_021155.1 65905 68553 R COG3451 Type IV secretory pathway, VirB4 components; conjugal transfer ATP-binding protein TraC complement(65905..68553) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905824.1 CDS STU288_1p00450 NC_021155.1 68569 68832 R putative inner membrane protein complement(68569..68832) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905825.1 CDS STU288_1p00455 NC_021155.1 68833 68952 R hypothetical protein complement(68833..68952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905826.1 CDS STU288_1p00460 NC_021155.1 68949 69416 R conjugative transfer protein complement(68949..69416) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905827.1 CDS STU288_1p00465 NC_021155.1 69409 69630 R COG1734 DnaK suppressor protein; conjugal transfer protein TraR complement(69409..69630) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905828.1 CDS STU288_1p00470 NC_021155.1 69765 70280 R conjugal transfer protein TraV complement(69765..70280) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905829.1 CDS STU288_1p00475 NC_021155.1 70277 70513 R COG1112 Superfamily I DNA and RNA helicases and helicase subunits; conjugal transfer protein TrbD complement(70277..70513) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905830.1 CDS STU288_1p00480 NC_021155.1 70500 71096 R conjugal transfer protein TraP complement(70500..71096) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905831.1 CDS STU288_1p00485 NC_021155.1 71086 72507 R COG0419 ATPase involved in DNA repair; conjugal transfer pilus assembly protein TraB complement(71086..72507) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905832.1 CDS STU288_1p00490 NC_021155.1 72507 73247 R conjugal transfer protein TraK complement(72507..73247) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905833.1 CDS STU288_1p00495 NC_021155.1 73234 73800 R conjugal transfer pilus assembly protein TraE complement(73234..73800) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905834.1 CDS STU288_1p00500 NC_021155.1 73822 74133 R conjugal transfer pilus assembly protein TraL complement(73822..74133) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905835.1 CDS STU288_1p00505 NC_021155.1 74148 74510 R conjugal transfer pilin subunit TraA complement(74148..74510) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905836.1 CDS STU288_1p00510 NC_021155.1 74552 74779 R conjugal transfer protein TraY complement(74552..74779) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905837.1 CDS STU288_1p00515 NC_021155.1 74873 75559 R COG0197 Ribosomal protein L16/L10E; conjugative transfer regulatory protein complement(74873..75559) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905838.1 CDS STU288_1p00520 NC_021155.1 75752 76132 R conjugal transfer protein TraM complement(75752..76132) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905839.1 CDS STU288_1p00525 NC_021155.1 76547 77017 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative transglycosylase 76547..77017 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905840.1 CDS STU288_1p00530 NC_021155.1 77329 77499 R hypothetical protein complement(77329..77499) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905841.1 CDS STU288_1p00535 NC_021155.1 77541 77831 R hypothetical protein complement(77541..77831) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905842.1 CDS STU288_1p00540 NC_021155.1 77878 78075 R hypothetical protein complement(77878..78075) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905843.1 CDS STU288_1p00545 NC_021155.1 78250 78420 R hypothetical protein complement(78250..78420) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905844.1 CDS STU288_1p00550 NC_021155.1 78494 78622 R hypothetical protein complement(78494..78622) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905845.1 CDS STU288_1p00555 NC_021155.1 78657 79394 R plasmid SOS inhibition protein A complement(78657..79394) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905846.1 CDS psiB NC_021155.1 79391 79822 R plasmid SOS inhibition protein B complement(79391..79822) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905847.1 CDS STU288_1p00565 NC_021155.1 79865 81862 R COG1475 Predicted transcriptional regulators; putative ParB-like nuclease domain protein complement(79865..81862) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905848.1 CDS STU288_1p00570 NC_021155.1 81931 82173 R putative cytoplasmic protein complement(81931..82173) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905849.1 CDS STU288_1p00575 NC_021155.1 82228 82746 R COG0629 Single-stranded DNA-binding protein; single-stranded binding protein complement(82228..82746) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905850.1 CDS STU288_1p00580 NC_021155.1 83241 83513 D hypothetical protein 83241..83513 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905851.1 CDS STU288_1p00585 NC_021155.1 83471 83794 R putative inner membrane protein complement(83471..83794) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905852.1 CDS STU288_1p00590 NC_021155.1 84030 84464 R putative cytoplasmic protein complement(84030..84464) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905853.1 CDS STU288_1p00595 NC_021155.1 84531 84965 R putative cytoplasmic protein complement(84531..84965) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905854.1 CDS STU288_1p00600 NC_021155.1 85037 85480 D hypothetical protein 85037..85480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905855.1 CDS STU288_1p00605 NC_021155.1 85461 86225 R putative inner membrane protein complement(85461..86225) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905856.1 CDS STU288_1p00610 NC_021155.1 86297 86707 R hypothetical protein complement(86297..86707) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905857.1 CDS STU288_1p00615 NC_021155.1 86766 86987 R putative cytoplasmic protein complement(86766..86987) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905858.1 CDS STU288_1p00620 NC_021155.1 86987 87667 R COG0863 DNA modification methylase; methylase complement(86987..87667) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905859.1 CDS STU288_1p00625 NC_021155.1 88049 88405 R putative cytoplasmic protein complement(88049..88405) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905860.1 CDS STU288_1p00630 NC_021155.1 88398 88868 R hypothetical protein complement(88398..88868) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905861.1 CDS STU288_1p00635 NC_021155.1 89237 89380 R hypothetical protein complement(89237..89380) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905862.1 CDS STU288_1p00640 NC_021155.1 89379 89801 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 89379..89801 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905863.1 CDS umuC NC_021155.1 89801 91075 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 89801..91075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905864.1 CDS STU288_1p00650 NC_021155.1 91157 92131 R COG1475 Predicted transcriptional regulators; plasmid partition protein B complement(91157..92131) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905865.1 CDS STU288_1p00655 NC_021155.1 92131 93336 R COG1192 ATPases involved in chromosome partitioning; plasmid partition protein A complement(92131..93336) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905866.1 CDS STU288_1p00660 NC_021155.1 93751 94692 D COG5464 Uncharacterized conserved protein; putative cytoplasmic protein 93751..94692 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905867.1 CDS STU288_1p00665 NC_021155.1 94724 95290 R hypothetical protein complement(94724..95290) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905868.1 CDS STU288_1p00670 NC_021155.1 95347 95763 R hypothetical protein complement(95347..95763) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905869.1 CDS STU288_1p00675 NC_021155.1 95735 95854 R hypothetical protein complement(95735..95854) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905870.1 CDS STU288_1p00680 NC_021155.1 95866 96375 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; hypothetical protein complement(95866..96375) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905871.1 CDS STU288_1p00685 NC_021155.1 96368 97483 R alpha-helical coiled-coil protein complement(96368..97483) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905872.1 CDS STU288_1p00690 NC_021155.1 98300 98440 R hypothetical protein complement(98300..98440) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905873.1 CDS STU288_1p00695 NC_021155.1 98885 99625 D COG0288 Carbonic anhydrase; carbonic anhydrase 98885..99625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905874.1 CDS STU288_1p00700 NC_021155.1 99984 100688 D COG3316 Transposase and inactivated derivatives; TnpA IS26-2 99984..100688 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905875.1 CDS STU288_1p00705 NC_021155.1 100750 100989 D COG0477 Permeases of the major facilitator superfamily; macrolide-efflux determinant 100750..100989 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905876.1 CDS STU288_1p00710 NC_021155.1 101135 101998 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 101135..101998 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905877.1 CDS STU288_1p00715 NC_021155.1 102036 102281 D COG2320 Uncharacterized conserved protein; hypothetical protein 102036..102281 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905878.1 CDS STU288_1p00720 NC_021155.1 102750 103541 D COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 102750..103541 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905879.1 CDS STU288_1p00725 NC_021155.1 103731 104138 R hypothetical protein complement(103731..104138) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905880.1 CDS STU288_1p00730 NC_021155.1 104160 104474 D COG3328 Transposase and inactivated derivatives; putative transposase 104160..104474 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905881.1 CDS STU288_1p00735 NC_021155.1 104721 105053 R COG2076 Membrane transporters of cations and cationic drugs; QacEdelta1 protein complement(104721..105053) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905882.1 CDS STU288_1p00740 NC_021155.1 105223 106014 R COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein complement(105223..106014) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905883.1 CDS STU288_1p00745 NC_021155.1 106107 107366 R COG0477 Permeases of the major facilitator superfamily; chloramphenicol efflux protein CmlA complement(106107..107366) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905884.1 CDS STU288_1p00750 NC_021155.1 107628 108419 R COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein complement(107628..108419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905885.1 CDS STU288_1p00755 NC_021155.1 108827 109324 R COG0262 Dihydrofolate reductase; dihydrofolate reductase complement(108827..109324) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905886.1 CDS STU288_1p00760 NC_021155.1 109469 110482 D COG0582 Integrase; integrase/recombinase 109469..110482 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905887.1 CDS STU288_1p00765 NC_021155.1 110441 110620 R putative transcriptional regulator complement(110441..110620) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905888.1 CDS STU288_1p00770 NC_021155.1 110835 111035 D modulator protein 110835..111035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905889.1 CDS STU288_1p00775 NC_021155.1 111161 111721 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; resolvase protein 111161..111721 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905890.1 CDS STU288_1p00780 NC_021155.1 111724 114690 D COG4644 Transposase and inactivated derivatives, TnpA family; protein TnpA 111724..114690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905891.1 CDS STU288_1p00785 NC_021155.1 114659 114901 R hypothetical protein complement(114659..114901) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905892.1 CDS STU288_1p00790 NC_021155.1 115230 116333 D COG4271 Predicted nucleotide-binding protein containing TIR -like domain; hypothetical protein 115230..116333 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905893.1 CDS STU288_1p00795 NC_021155.1 116363 117493 D hypothetical protein 116363..117493 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905894.1 CDS STU288_1p00800 NC_021155.1 117493 117783 D KorC1 117493..117783 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905895.1 CDS STU288_1p00805 NC_021155.1 117780 118082 R hypothetical protein complement(117780..118082) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905896.1 CDS STU288_1p00810 NC_021155.1 118302 119435 D hypothetical protein 118302..119435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905897.1 CDS STU288_1p00815 NC_021155.1 119455 119739 D KorC 119455..119739 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905898.1 CDS STU288_1p00820 NC_021155.1 119910 120557 R hypothetical protein complement(119910..120557) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905899.1 CDS STU288_1p00825 NC_021155.1 120545 120880 R hypothetical protein complement(120545..120880) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905900.1 CDS STU288_1p00830 NC_021155.1 121060 121641 R hypothetical protein complement(121060..121641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905901.1 CDS STU288_1p00835 NC_021155.1 122355 122573 D COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid; plasmid maintenance protein CcdA 122355..122573 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905902.1 CDS STU288_1p00840 NC_021155.1 122575 122880 D plasmid maintenance protein CcdB 122575..122880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905903.1 CDS STU288_1p00845 NC_021155.1 122882 123172 D putative cytoplasmic protein 122882..123172 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905904.1 CDS STU288_1p00850 NC_021155.1 123169 123690 D putative cytoplasmic protein 123169..123690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905905.1 CDS STU288_1p00855 NC_021155.1 123725 124507 D COG0582 Integrase; resolvase 123725..124507 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905906.1 CDS STU288_1p00860 NC_021155.1 124516 125067 D COG2200 FOG: EAL domain; putative diguanylate cyclase/phosphodiesterase 124516..125067 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905907.1 CDS STU288_1p00865 NC_021155.1 125233 125742 D putative inner membrane protein 125233..125742 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905908.1 CDS STU288_1p00870 NC_021155.1 125736 126221 D putative inner membrane protein 125736..126221 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905909.1 CDS STU288_1p00875 NC_021155.1 126474 127061 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 126474..127061 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905910.1 CDS STU288_1p00880 NC_021155.1 127085 127501 D putative adhesin 127085..127501 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905911.1 CDS STU288_1p00885 NC_021155.1 127568 127918 R COG0675 Transposase and inactivated derivatives; putative transposase complement(127568..127918) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905912.1 CDS STU288_1p00890 NC_021155.1 128157 128399 D COG1943 Transposase and inactivated derivatives; putative transposase, IS200-like protein 128157..128399 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905913.1 CDS STU288_1p00895 NC_021155.1 128526 129176 R virulence protein SpvD complement(128526..129176) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905914.1 CDS STU288_1p00900 NC_021155.1 129437 130162 R type III effector phosphothreonine lyase complement(129437..130162) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905915.1 CDS STU288_1p00905 NC_021155.1 130444 132219 R COG5585 NAD+--asparagine ADP-ribosyltransferase; virulence protein SpvB complement(130444..132219) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905916.1 CDS STU288_1p00910 NC_021155.1 132321 133025 R COG3316 Transposase and inactivated derivatives; TnpA IS26-2 complement(132321..133025) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905917.1 CDS STU288_1p00915 NC_021155.1 133084 133245 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; resolvase 133084..133245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905918.1 CDS STU288_1p00920 NC_021155.1 133428 134288 D COG2367 Beta-lactamase class A; beta-lactamase TEM 133428..134288 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905919.1 CDS STU288_1p00925 NC_021155.1 134692 134856 R hypothetical protein complement(134692..134856) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905920.1 CDS STU288_1p00930 NC_021155.1 135063 135314 D hypothetical protein 135063..135314 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905921.1 CDS STU288_1p00935 NC_021155.1 135386 135538 R post-segregation killing protein complement(135386..135538) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905922.1 CDS STU288_1p00940 NC_021155.1 135830 137038 D IncI1 conjugal transfer protein TrbA 135830..137038 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905923.1 CDS STU288_1p00945 NC_021155.1 137057 138127 D COG1651 Protein-disulfide isomerase; TrbB 137057..138127 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905924.1 CDS STU288_1p00950 NC_021155.1 138120 140411 D conjugal transfer protein TrbC 138120..140411 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905925.1 CDS STU288_1p00955 NC_021155.1 140448 143147 R COG3843 Type IV secretory pathway, VirD2 components (relaxase); TrbD complement(140448..143147) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905926.1 CDS STU288_1p00960 NC_021155.1 143158 143490 R relaxosome component complement(143158..143490) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905927.1 CDS STU288_1p00965 NC_021155.1 143724 144059 D hypothetical protein 143724..144059 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905928.1 CDS STU288_1p00970 NC_021155.1 144146 144994 R hypothetical protein complement(144146..144994) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905929.1 CDS STU288_1p00975 NC_021155.1 145343 145540 D hypothetical protein 145343..145540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905930.1 CDS STU288_1p00980 NC_021155.1 145640 147211 R COG3436 Transposase and inactivated derivatives; issfl4 orf3 complement(145640..147211) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905931.1 CDS STU288_1p00985 NC_021155.1 147231 147578 R COG3436 Transposase and inactivated derivatives; putative transposase subunit complement(147231..147578) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905932.1 CDS STU288_1p00990 NC_021155.1 147578 148255 R COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA complement(147578..148255) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905933.1 CDS STU288_1p00995 NC_021155.1 148296 148532 D YgeA 148296..148532 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905934.1 CDS STU288_1p01000 NC_021155.1 148563 >148711 R YdgA complement(148563..>148711) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905935.1 CDS STU288_2p00005 NC_021156.1 513 797 R mobilization protein C, MobC complement(513..797) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905936.1 CDS STU288_2p00010 NC_021156.1 996 3125 D mobilization protein A, MobA 996..3125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905937.1 CDS STU288_2p00015 NC_021156.1 3186 3398 D unknown protein E 3186..3398 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905938.1 CDS STU288_2p00020 NC_021156.1 3400 3606 D repressor protein F 3400..3606 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905939.1 CDS STU288_2p00025 NC_021156.1 3636 4475 D COG3598 RecA-family ATPase; replication protein A, RepA 3636..4475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905940.1 CDS STU288_2p00030 NC_021156.1 4462 5313 D replication protein C 4462..5313 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905941.1 CDS STU288_2p00035 NC_021156.1 5621 6436 D COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 5621..6436 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905942.1 CDS STU288_2p00040 NC_021156.1 6497 7300 D COG3231 Aminoglycoside phosphotransferase; StrA 6497..7300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905943.1 CDS STU288_2p00045 NC_021156.1 7300 8136 D COG3570 Streptomycin 6-kinase; streptomycin 3''-kinase 7300..8136 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905944.1 CDS STU288_2p00050 NC_021156.1 8523 8795 D hypothetical protein 8523..8795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905945.1 CDS STU288_2p00065 NC_021156.1 9476 10750 D COG0477 Permeases of the major facilitator superfamily; tetracycline efflux protein 9476..10750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905946.1 CDS STU288_2p00070 NC_021156.1 10681 >11067 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(10681..>11067) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905947.1 CDS STU288_3p00005 NC_021157.1 991 1314 D mobilization protein MobC 991..1314 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905948.1 CDS STU288_3p00010 NC_021157.1 1304 2803 D MobA-like protein 1304..2803 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905949.1 CDS STU288_3p00015 NC_021157.1 1992 2477 D MobB-like protein 1992..2477 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905950.1 CDS STU288_3p00020 NC_021157.1 2481 2696 D MobD-like protein 2481..2696 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YP_007905951.1 CDS STU288_3p00025 NC_021157.1 3027 4535 D COG2199 FOG: GGDEF domain; hypothetical protein 3027..4535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23062 tRNA STU288_t23062 NC_021151.1 290497 290573 D tRNA-Ile 290497..290573 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23064 tRNA STU288_t23064 NC_021151.1 290683 290758 D tRNA-Ala 290683..290758 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23066 tRNA STU288_t23066 NC_021151.1 390956 391043 D tRNA-Ser 390956..391043 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23068 tRNA STU288_t23068 NC_021151.1 440014 440101 R tRNA-Ser complement(440014..440101) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23070 tRNA STU288_t23070 NC_021151.1 548487 548563 D tRNA-Arg 548487..548563 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23072 tRNA STU288_t23072 NC_021151.1 560925 561001 D tRNA-Arg 560925..561001 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23074 tRNA STU288_t23074 NC_021151.1 716920 716996 R tRNA-Val complement(716920..716996) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23076 tRNA STU288_t23076 NC_021151.1 717007 717083 R tRNA-Val complement(717007..717083) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23078 tRNA STU288_t23078 NC_021151.1 1067846 1067930 D tRNA-Tyr 1067846..1067930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23080 tRNA STU288_t23080 NC_021151.1 1068135 1068219 D tRNA-Tyr 1068135..1068219 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23082 tRNA STU288_t23082 NC_021151.1 1250120 1250206 R tRNA-Leu complement(1250120..1250206) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23084 tRNA STU288_t23084 NC_021151.1 1250218 1250291 R tRNA-Cys complement(1250218..1250291) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23086 tRNA STU288_t23086 NC_021151.1 1250344 1250419 R tRNA-Gly complement(1250344..1250419) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23088 tRNA STU288_t23088 NC_021151.1 1296931 1297020 R tRNA-Ser complement(1296931..1297020) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23090 tRNA STU288_t23090 NC_021151.1 1298007 1298082 D tRNA-Asn 1298007..1298082 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23092 tRNA STU288_t23092 NC_021151.1 1298977 1299052 D tRNA-Asn 1298977..1299052 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23094 tRNA STU288_t23094 NC_021151.1 1308919 1308994 R tRNA-Asn complement(1308919..1308994) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23096 tRNA STU288_t23096 NC_021151.1 1310752 1310827 D tRNA-Asn 1310752..1310827 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23098 tRNA STU288_t23098 NC_021151.1 1544196 1544272 D tRNA-Pro 1544196..1544272 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23100 tRNA STU288_t23100 NC_021151.1 1719265 1719339 D tRNA-Arg 1719265..1719339 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23102 tRNA STU288_t23102 NC_021151.1 1742379 1742454 R tRNA-Ala complement(1742379..1742454) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23104 tRNA STU288_t23104 NC_021151.1 1742497 1742572 R tRNA-Ala complement(1742497..1742572) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23106 tRNA STU288_t23106 NC_021151.1 1745278 1745353 D tRNA-Val 1745278..1745353 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23108 tRNA STU288_t23108 NC_021151.1 1745399 1745474 D tRNA-Val 1745399..1745474 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23110 tRNA STU288_t23110 NC_021151.1 1745516 1745591 D tRNA-Val 1745516..1745591 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23112 tRNA STU288_t23112 NC_021151.1 1745596 1745671 D tRNA-Lys 1745596..1745671 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23114 tRNA STU288_t23114 NC_021151.1 1977067 1977143 R tRNA-Arg complement(1977067..1977143) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23116 tRNA STU288_t23116 NC_021151.1 2063069 2063156 D tRNA-Ser 2063069..2063156 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23118 tRNA STU288_t23118 NC_021151.1 2228243 2228318 R tRNA-Lys complement(2228243..2228318) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23120 tRNA STU288_t23120 NC_021151.1 2228453 2228528 R tRNA-Lys complement(2228453..2228528) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23122 tRNA STU288_t23122 NC_021151.1 2228578 2228653 R tRNA-Lys complement(2228578..2228653) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23124 tRNA STU288_t23124 NC_021151.1 2228657 2228732 R tRNA-Val complement(2228657..2228732) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23126 tRNA STU288_t23126 NC_021151.1 2228864 2228939 R tRNA-Lys complement(2228864..2228939) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23128 tRNA STU288_t23128 NC_021151.1 2309001 2309077 D tRNA-Met 2309001..2309077 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23130 tRNA STU288_t23130 NC_021151.1 2309086 2309170 D tRNA-Leu 2309086..2309170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23132 tRNA STU288_t23132 NC_021151.1 2309194 2309268 D tRNA-Gln 2309194..2309268 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23134 tRNA STU288_t23134 NC_021151.1 2309304 2309378 D tRNA-Gln 2309304..2309378 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23136 tRNA STU288_t23136 NC_021151.1 2309394 2309470 D tRNA-Met 2309394..2309470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23138 tRNA STU288_t23138 NC_021151.1 2309517 2309591 D tRNA-Gln 2309517..2309591 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23140 tRNA STU288_t23140 NC_021151.1 2309635 2309709 D tRNA-Gln 2309635..2309709 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23142 tRNA STU288_t23142 NC_021151.1 2429661 2429733 R tRNA-OTHER complement(2429661..2429733) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23144 tRNA STU288_t23144 NC_021151.1 2434083 2434159 R tRNA-Arg complement(2434083..2434159) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23146 tRNA STU288_t23146 NC_021151.1 2720229 2720304 R tRNA-Thr complement(2720229..2720304) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23148 tRNA STU288_t23148 NC_021151.1 2784757 2784833 R tRNA-Asp complement(2784757..2784833) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23150 tRNA STU288_t23150 NC_021151.1 2794196 2794272 R tRNA-Asp complement(2794196..2794272) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23152 tRNA STU288_t23152 NC_021151.1 2797877 2797952 R tRNA-Glu complement(2797877..2797952) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23154 tRNA STU288_t23154 NC_021151.1 2967844 2967920 R tRNA-Arg complement(2967844..2967920) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23156 tRNA STU288_t23156 NC_021151.1 2967983 2968059 R tRNA-Arg complement(2967983..2968059) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23158 tRNA STU288_t23158 NC_021151.1 2968122 2968198 R tRNA-Arg complement(2968122..2968198) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23160 tRNA STU288_t23160 NC_021151.1 2968202 2968294 R tRNA-Ser complement(2968202..2968294) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23162 tRNA STU288_t23162 NC_021151.1 3138653 3138729 D tRNA-Met 3138653..3138729 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23164 tRNA STU288_t23164 NC_021151.1 3138759 3138835 D tRNA-Met 3138759..3138835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23166 tRNA STU288_t23166 NC_021151.1 3195041 3195114 R tRNA-Gly complement(3195041..3195114) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23168 tRNA STU288_t23168 NC_021151.1 3273775 3273850 D tRNA-Phe 3273775..3273850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23170 tRNA STU288_t23170 NC_021151.1 3376633 3376708 D tRNA-Met 3376633..3376708 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23172 tRNA STU288_t23172 NC_021151.1 3456129 3456205 R tRNA-Met complement(3456129..3456205) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23174 tRNA STU288_t23174 NC_021151.1 3459378 3459464 R tRNA-Leu complement(3459378..3459464) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23176 tRNA STU288_t23176 NC_021151.1 3564416 3564491 R tRNA-Thr complement(3564416..3564491) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23178 tRNA STU288_t23178 NC_021151.1 3567939 3568014 R tRNA-Glu complement(3567939..3568014) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23180 tRNA STU288_t23180 NC_021151.1 3815305 3815381 R tRNA-Pro complement(3815305..3815381) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23182 tRNA STU288_t23182 NC_021151.1 3943472 3943566 D tRNA-Sec 3943472..3943566 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23184 tRNA STU288_t23184 NC_021151.1 4096656 4096731 D tRNA-Glu 4096656..4096731 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23186 tRNA STU288_t23186 NC_021151.1 4100180 4100256 D tRNA-Asp 4100180..4100256 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23188 tRNA STU288_t23188 NC_021151.1 4100265 4100340 D tRNA-Trp 4100265..4100340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23190 tRNA STU288_t23190 NC_021151.1 4135805 4135881 D tRNA-Arg 4135805..4135881 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23192 tRNA STU288_t23192 NC_021151.1 4135936 4136011 D tRNA-His 4135936..4136011 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23194 tRNA STU288_t23194 NC_021151.1 4136032 4136118 D tRNA-Leu 4136032..4136118 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23196 tRNA STU288_t23196 NC_021151.1 4136161 4136237 D tRNA-Pro 4136161..4136237 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23198 tRNA STU288_t23198 NC_021151.1 4192567 4192643 D tRNA-Ile 4192567..4192643 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23200 tRNA STU288_t23200 NC_021151.1 4192755 4192830 D tRNA-Ala 4192755..4192830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23202 tRNA STU288_t23202 NC_021151.1 4347620 4347696 D tRNA-Ile 4347620..4347696 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23204 tRNA STU288_t23204 NC_021151.1 4347808 4347883 D tRNA-Ala 4347808..4347883 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23206 tRNA STU288_t23206 NC_021151.1 4354923 4354998 D tRNA-Thr 4354923..4354998 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23208 tRNA STU288_t23208 NC_021151.1 4355007 4355091 D tRNA-Tyr 4355007..4355091 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23210 tRNA STU288_t23210 NC_021151.1 4355208 4355282 D tRNA-Gly 4355208..4355282 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23212 tRNA STU288_t23212 NC_021151.1 4355289 4355364 D tRNA-Thr 4355289..4355364 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23214 tRNA STU288_t23214 NC_021151.1 4391179 4391254 D tRNA-Glu 4391179..4391254 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23216 tRNA STU288_t23216 NC_021151.1 4561458 4561533 R tRNA-Phe complement(4561458..4561533) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23218 tRNA STU288_t23218 NC_021151.1 4591299 4591374 D tRNA-Gly 4591299..4591374 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23220 tRNA STU288_t23220 NC_021151.1 4591531 4591606 D tRNA-Gly 4591531..4591606 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23222 tRNA STU288_t23222 NC_021151.1 4591763 4591838 D tRNA-Gly 4591763..4591838 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23224 tRNA STU288_t23224 NC_021151.1 4725891 4725975 D tRNA-Leu 4725891..4725975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23226 tRNA STU288_t23226 NC_021151.1 4805508 4805594 R tRNA-Leu complement(4805508..4805594) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23228 tRNA STU288_t23228 NC_021151.1 4805626 4805713 R tRNA-Leu complement(4805626..4805713) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_t23230 tRNA STU288_t23230 NC_021151.1 4805741 4805827 R tRNA-Leu complement(4805741..4805827) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23248 rRNA STU288_r23248 NC_021151.1 288886 290439 D 16S ribosomal RNA 288886..290439 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23264 rRNA STU288_r23264 NC_021151.1 290940 294040 D 23S ribosomal RNA 290940..294040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23232 rRNA STU288_r23232 NC_021151.1 294228 294343 D 5S ribosomal RNA 294228..294343 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23234 rRNA STU288_r23234 NC_021151.1 2794464 2794579 R 5S ribosomal RNA complement(2794464..2794579) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23262 rRNA STU288_r23262 NC_021151.1 2794774 2797683 R 23S ribosomal RNA complement(2794774..2797683) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23250 rRNA STU288_r23250 NC_021151.1 2798026 2799579 R 16S ribosomal RNA complement(2798026..2799579) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23236 rRNA STU288_r23236 NC_021151.1 3564261 3564376 R 5S ribosomal RNA complement(3564261..3564376) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23238 rRNA STU288_r23238 NC_021151.1 3564506 3564621 R 5S ribosomal RNA complement(3564506..3564621) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23266 rRNA STU288_r23266 NC_021151.1 3564705 3567707 R 23S ribosomal RNA complement(3564705..3567707) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23252 rRNA STU288_r23252 NC_021151.1 3568088 3569641 R 16S ribosomal RNA complement(3568088..3569641) Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23254 rRNA STU288_r23254 NC_021151.1 4095029 4096580 D 16S ribosomal RNA 4095029..4096580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23267 rRNA STU288_r23267 NC_021151.1 4096924 4099926 D 23S ribosomal RNA 4096924..4099926 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23240 rRNA STU288_r23240 NC_021151.1 4100010 4100125 D 5S ribosomal RNA 4100010..4100125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23256 rRNA STU288_r23256 NC_021151.1 4190956 4192507 D 16S ribosomal RNA 4190956..4192507 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23268 rRNA STU288_r23268 NC_021151.1 4193012 4196014 D 23S ribosomal RNA 4193012..4196014 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23242 rRNA STU288_r23242 NC_021151.1 4196202 4196317 D 5S ribosomal RNA 4196202..4196317 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23258 rRNA STU288_r23258 NC_021151.1 4346028 4347560 D 16S ribosomal RNA 4346028..4347560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23270 rRNA STU288_r23270 NC_021151.1 4348063 4351065 D 23S ribosomal RNA 4348063..4351065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23244 rRNA STU288_r23244 NC_021151.1 4351252 4351367 D 5S ribosomal RNA 4351252..4351367 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23260 rRNA STU288_r23260 NC_021151.1 4389552 4391105 D 16S ribosomal RNA 4389552..4391105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23272 rRNA STU288_r23272 NC_021151.1 4391486 4394488 D 23S ribosomal RNA 4391486..4394488 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 STU288_r23246 rRNA STU288_r23246 NC_021151.1 4394675 4394790 D 5S ribosomal RNA 4394675..4394790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288