-- dump date 20140620_055601 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_007901110.1 482902550 43..2505 1 NC_021151.1 COG0527 Aspartokinases; bifunctional aspartokinase I/homoserine dehydrogenase I 2505 thrA 1171376000001 thrA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional aspartokinase I/homoserine dehydrogenase I YP_007901110.1 43 D 1171376 CDS YP_007901111.1 482902551 2507..3436 1 NC_021151.1 COG0083 Homoserine kinase; homoserine kinase 3436 1171376000002 STU288_00010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 homoserine kinase YP_007901111.1 2507 D 1171376 CDS YP_007901112.1 482902552 3440..4726 1 NC_021151.1 COG0498 Threonine synthase; threonine synthase 4726 1171376000003 STU288_00015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine synthase YP_007901112.1 3440 D 1171376 CDS YP_007901113.1 482902553 complement(4820..5593) 1 NC_021151.1 COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein 5593 1171376000004 STU288_00020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901113.1 4820 R 1171376 CDS YP_007901114.1 482902554 complement(5672..7102) 1 NC_021151.1 COG1115 Na+/alanine symporter; amino-acid transport protein 7102 1171376000005 STU288_00025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino-acid transport protein YP_007901114.1 5672 R 1171376 CDS YP_007901115.1 482902555 7371..8324 1 NC_021151.1 COG0176 Transaldolase; transaldolase B 8324 1171376000006 STU288_00030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transaldolase B YP_007901115.1 7371 D 1171376 CDS YP_007901116.1 482902556 8435..9025 1 NC_021151.1 COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 9025 mogA 1171376000007 mogA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdenum cofactor biosynthesis protein MogA YP_007901116.1 8435 D 1171376 CDS YP_007901117.1 482902557 complement(9082..9648) 1 NC_021151.1 COG1584 Predicted membrane protein; hypothetical protein 9648 1171376000008 STU288_00040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901117.1 9082 R 1171376 CDS YP_007901118.1 482902558 complement(9798..10511) 1 NC_021151.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 10511 1171376000009 STU288_00045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901118.1 9798 R 1171376 CDS YP_007901119.1 482902559 complement(10547..10951) 1 NC_021151.1 hypothetical protein 10951 1171376000010 STU288_00050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901119.1 10547 R 1171376 CDS YP_007901120.1 482902560 11299..13215 1 NC_021151.1 COG0443 Molecular chaperone; molecular chaperone DnaK 13215 dnaK 1171376000011 dnaK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molecular chaperone DnaK YP_007901120.1 11299 D 1171376 CDS YP_007901121.1 482902561 13301..14440 1 NC_021151.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 14440 1171376000012 STU288_00060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone protein DnaJ YP_007901121.1 13301 D 1171376 CDS YP_007901122.1 482902562 14720..15667 1 NC_021151.1 COG0583 Transcriptional regulator; putative transcriptional regulator 15667 1171376000013 STU288_00065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007901122.1 14720 D 1171376 CDS YP_007901123.1 482902563 15794..16138 1 NC_021151.1 hypothetical protein 16138 1171376000014 STU288_00070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901123.1 15794 D 1171376 CDS YP_007901124.1 482902564 complement(16199..16732) 1 NC_021151.1 COG3926 Putative secretion activating protein; hypothetical protein 16732 1171376000015 STU288_00075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901124.1 16199 R 1171376 CDS YP_007901125.1 482902565 complement(16749..17192) 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; hypothetical protein 17192 1171376000016 STU288_00080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901125.1 16749 R 1171376 CDS YP_007901126.1 482902566 17573..19672 1 NC_021151.1 COG3325 Chitinase; chitinase 19672 1171376000017 STU288_00085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chitinase YP_007901126.1 17573 D 1171376 CDS YP_007901127.1 482902567 19764..22760 1 NC_021151.1 chitinase 22760 1171376000018 STU288_00090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chitinase YP_007901127.1 19764 D 1171376 CDS YP_007901128.1 482902568 23041..23745 1 NC_021151.1 hypothetical protein 23745 1171376000019 STU288_00095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901128.1 23041 D 1171376 CDS YP_007901129.1 482902569 24175..24717 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfA 24717 1171376000020 STU288_00100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein BcfA YP_007901129.1 24175 D 1171376 CDS YP_007901130.1 482902570 24818..25504 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein BcfB 25504 1171376000021 STU288_00105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein BcfB YP_007901130.1 24818 D 1171376 CDS YP_007901131.1 482902571 25509..28130 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 28130 1171376000022 STU288_00110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane usher protein YP_007901131.1 25509 D 1171376 CDS YP_007901132.1 482902572 28131..29138 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfD 29138 1171376000023 STU288_00115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein BcfD YP_007901132.1 28131 D 1171376 CDS YP_007901133.1 482902573 29139..29684 1 NC_021151.1 fimbrial protein BcfE 29684 1171376000024 STU288_00120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein BcfE YP_007901133.1 29139 D 1171376 CDS YP_007901134.1 482902574 29700..30218 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein BcfF 30218 1171376000025 STU288_00125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein BcfF YP_007901134.1 29700 D 1171376 CDS YP_007901135.1 482902575 30211..30915 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone BcfG 30915 1171376000026 STU288_00130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone BcfG YP_007901135.1 30211 D 1171376 CDS YP_007901136.1 482902576 30980..31825 1 NC_021151.1 COG1651 Protein-disulfide isomerase; hypothetical protein 31825 1171376000027 STU288_00135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901136.1 30980 D 1171376 CDS YP_007901137.1 482902577 31864..32151 1 NC_021151.1 hypothetical protein 32151 1171376000028 STU288_00140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901137.1 31864 D 1171376 CDS YP_007901138.1 482902578 complement(32251..32700) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; hypothetical protein 32700 1171376000029 STU288_00145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901138.1 32251 R 1171376 CDS YP_007901139.1 482902579 33070..34074 1 NC_021151.1 COG0583 Transcriptional regulator; putative transcriptional regulator 34074 1171376000030 STU288_00150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007901139.1 33070 D 1171376 CDS YP_007901140.1 482902580 complement(34082..34522) 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; putative transcriptional regulator 34522 1171376000031 STU288_00155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007901140.1 34082 R 1171376 CDS YP_007901141.1 482902581 35045..36763 1 NC_021151.1 sulfatase 36763 1171376000032 STU288_00160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfatase YP_007901141.1 35045 D 1171376 CDS YP_007901142.1 482902582 complement(36809..38380) 1 NC_021151.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; secreted 5'-nucleotidase 38380 1171376000033 STU288_00165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted 5'-nucleotidase YP_007901142.1 36809 R 1171376 CDS YP_007901143.1 482902583 complement(38479..39240) 1 NC_021151.1 hypothetical protein 39240 1171376000034 STU288_00170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901143.1 38479 R 1171376 CDS YP_007901144.1 482902584 39837..41330 1 NC_021151.1 COG3119 Arylsulfatase A and related enzymes; sulfatase 41330 1171376000035 STU288_00175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfatase YP_007901144.1 39837 D 1171376 CDS YP_007901145.1 482902585 41429..42619 1 NC_021151.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); sulfatase regulatory protein 42619 1171376000036 STU288_00180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfatase regulatory protein YP_007901145.1 41429 D 1171376 CDS YP_007901146.1 482902586 42644..43891 1 NC_021151.1 putative cytoplasmic protein 43891 1171376000037 STU288_00185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901146.1 42644 D 1171376 CDS YP_007901147.1 482902587 44018..45733 1 NC_021151.1 sulfatase 45733 1171376000038 STU288_00190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfatase YP_007901147.1 44018 D 1171376 CDS YP_007901148.1 482902588 45896..47062 1 NC_021151.1 COG3004 Na+/H+ antiporter; pH-dependent sodium/proton antiporter 47062 nhaA 1171376000039 nhaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pH-dependent sodium/proton antiporter YP_007901148.1 45896 D 1171376 CDS YP_007901149.1 482902589 47130..48023 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional activator NhaR 48023 nhaR 1171376000040 nhaR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator NhaR YP_007901149.1 47130 D 1171376 CDS YP_007901150.1 482902590 complement(48078..50117) 1 NC_021151.1 COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; glycosyl hydrolase 50117 1171376000041 STU288_00205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl hydrolase YP_007901150.1 48078 R 1171376 CDS YP_007901151.1 482902591 complement(50157..51530) 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; putative sodium galactoside symporter 51530 1171376000042 STU288_00210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sodium galactoside symporter YP_007901151.1 50157 R 1171376 CDS YP_007901152.1 482902592 complement(51986..52249) 1 NC_021151.1 COG0268 Ribosomal protein S20; 30S ribosomal protein S20 52249 rpsT 1171376000043 rpsT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S20 YP_007901152.1 51986 R 1171376 CDS YP_007901153.1 482902593 52355..52570 1 NC_021151.1 putative cytoplasmic protein 52570 1171376000044 STU288_00220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901153.1 52355 D 1171376 CDS YP_007901154.1 482902594 52578..53516 1 NC_021151.1 COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 53516 1171376000045 STU288_00225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional riboflavin kinase/FMN adenylyltransferase YP_007901154.1 52578 D 1171376 CDS YP_007901155.1 482902595 53561..56395 1 NC_021151.1 COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA ligase 56395 ileS 1171376000046 ileS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isoleucyl-tRNA ligase YP_007901155.1 53561 D 1171376 CDS YP_007901156.1 482902596 56395..56895 1 NC_021151.1 COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 56895 lspA 1171376000047 lspA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein signal peptidase YP_007901156.1 56395 D 1171376 CDS YP_007901157.1 482902597 57050..57499 1 NC_021151.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 57499 1171376000048 STU288_00240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007901157.1 57050 D 1171376 CDS YP_007901158.1 482902598 57502..58452 1 NC_021151.1 COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58452 ispH 1171376000049 ispH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_007901158.1 57502 D 1171376 CDS YP_007901159.1 482902599 58652..59854 1 NC_021151.1 putative nitrite reductase 59854 1171376000050 STU288_00250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative nitrite reductase YP_007901159.1 58652 D 1171376 CDS YP_007901160.1 482902600 59870..60790 1 NC_021151.1 COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase RihC 60790 1171376000051 STU288_00255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleoside hydrolase RihC YP_007901160.1 59870 D 1171376 CDS YP_007901161.1 482902601 complement(60812..61498) 1 NC_021151.1 COG4565 Response regulator of citrate/malate metabolism; putative C4-dicarboxylate response regulator dctR 61498 1171376000052 STU288_00260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative C4-dicarboxylate response regulator dctR YP_007901161.1 60812 R 1171376 CDS YP_007901162.1 482902602 complement(61500..63119) 1 NC_021151.1 COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor kinase DpiB 63119 1171376000053 STU288_00265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor kinase DpiB YP_007901162.1 61500 R 1171376 CDS YP_007901163.1 482902603 complement(63254..64555) 1 NC_021151.1 COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; putative oxalacetate decarboxylase subunit beta 64555 1171376000054 STU288_00270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative oxalacetate decarboxylase subunit beta YP_007901163.1 63254 R 1171376 CDS YP_007901164.1 482902604 complement(64568..66343) 1 NC_021151.1 COG5016 Pyruvate/oxaloacetate carboxyltransferase; oxaloacetate decarboxylase 66343 1171376000055 STU288_00275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxaloacetate decarboxylase YP_007901164.1 64568 R 1171376 CDS YP_007901165.1 482902605 complement(66360..66599) 1 NC_021151.1 COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 66599 1171376000056 STU288_00280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxaloacetate decarboxylase subunit gamma YP_007901165.1 66360 R 1171376 CDS YP_007901166.1 482902606 complement(66758..68098) 1 NC_021151.1 COG3493 Na+/citrate symporter; citrate-sodium symporter 68098 1171376000057 STU288_00285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate-sodium symporter YP_007901166.1 66758 R 1171376 CDS YP_007901167.1 482902607 68355..69386 1 NC_021151.1 COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 69386 1171376000058 STU288_00290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 [citrate [pro-3S]-lyase] ligase YP_007901167.1 68355 D 1171376 CDS YP_007901168.1 482902608 69416..69709 1 NC_021151.1 COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma 69709 1171376000059 STU288_00295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit gamma YP_007901168.1 69416 D 1171376 CDS YP_007901169.1 482902609 69706..70575 1 NC_021151.1 COG2301 Citrate lyase beta subunit; citrate lyase subunit beta 70575 1171376000060 STU288_00300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit beta YP_007901169.1 69706 D 1171376 CDS YP_007901170.1 482902610 70586..72106 1 NC_021151.1 COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 72106 1171376000061 STU288_00305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit alpha YP_007901170.1 70586 D 1171376 CDS YP_007901171.1 482902611 72106..72657 1 NC_021151.1 COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); putative cytoplasmic protein 72657 1171376000062 STU288_00310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901171.1 72106 D 1171376 CDS YP_007901172.1 482902612 72635..73543 1 NC_021151.1 COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase 73543 1171376000063 STU288_00315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 triphosphoribosyl-dephospho-CoA synthase YP_007901172.1 72635 D 1171376 CDS YP_007901173.1 482902613 73723..74544 1 NC_021151.1 COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 74544 1171376000064 STU288_00320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrodipicolinate reductase YP_007901173.1 73723 D 1171376 CDS YP_007901174.1 482902614 complement(74670..74945) 1 NC_021151.1 hypothetical protein 74945 1171376000065 STU288_00325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901174.1 74670 R 1171376 CDS YP_007901175.1 482902615 75586..76734 1 NC_021151.1 COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 76734 1171376000066 STU288_00330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamoyl phosphate synthase small subunit YP_007901175.1 75586 D 1171376 CDS YP_007901176.1 482902616 76753..79980 1 NC_021151.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 79980 carB 1171376000067 carB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamoyl phosphate synthase large subunit YP_007901176.1 76753 D 1171376 CDS YP_007901177.1 482902617 80254..80649 1 NC_021151.1 DNA-binding transcriptional activator CaiF 80649 1171376000068 STU288_00340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator CaiF YP_007901177.1 80254 D 1171376 CDS YP_007901178.1 482902618 complement(80726..81322) 1 NC_021151.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carnitine operon protein CaiE 81322 1171376000069 STU288_00345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carnitine operon protein CaiE YP_007901178.1 80726 R 1171376 CDS YP_007901179.1 482902619 complement(81431..82216) 1 NC_021151.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; carnitinyl-CoA dehydratase 82216 1171376000070 STU288_00350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carnitinyl-CoA dehydratase YP_007901179.1 81431 R 1171376 CDS YP_007901180.1 482902620 complement(82270..83823) 1 NC_021151.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; crotonobetaine/carnitine-CoA ligase 83823 caiC 1171376000071 caiC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 crotonobetaine/carnitine-CoA ligase YP_007901180.1 82270 R 1171376 CDS YP_007901181.1 482902621 complement(83886..85103) 1 NC_021151.1 COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; crotonobetainyl-CoA:carnitine CoA-transferase 85103 1171376000072 STU288_00360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 crotonobetainyl-CoA:carnitine CoA-transferase YP_007901181.1 83886 R 1171376 CDS YP_007901182.1 482902622 complement(85215..86357) 1 NC_021151.1 COG1960 Acyl-CoA dehydrogenases; crotonobetainyl-CoA dehydrogenase 86357 1171376000073 STU288_00365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 crotonobetainyl-CoA dehydrogenase YP_007901182.1 85215 R 1171376 CDS YP_007901183.1 482902623 complement(86392..87909) 1 NC_021151.1 COG1292 Choline-glycine betaine transporter; L-carnitine/gamma-butyrobetaine antiporter 87909 1171376000074 STU288_00370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-carnitine/gamma-butyrobetaine antiporter YP_007901183.1 86392 R 1171376 CDS YP_007901184.1 482902624 88137..88322 1 NC_021151.1 hypothetical protein 88322 1171376000075 STU288_00375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901184.1 88137 D 1171376 CDS YP_007901185.1 482902625 88390..89160 1 NC_021151.1 COG2086 Electron transfer flavoprotein, beta subunit; electron transfer flavoprotein FixA 89160 1171376000076 STU288_00380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transfer flavoprotein FixA YP_007901185.1 88390 D 1171376 CDS YP_007901186.1 482902626 89176..90117 1 NC_021151.1 COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein FixB 90117 fixB 1171376000077 fixB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transfer flavoprotein FixB YP_007901186.1 89176 D 1171376 CDS YP_007901187.1 482902627 90167..91453 1 NC_021151.1 COG0644 Dehydrogenases (flavoproteins); oxidoreductase FixC 91453 1171376000078 STU288_00390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase FixC YP_007901187.1 90167 D 1171376 CDS YP_007901188.1 482902628 91450..91737 1 NC_021151.1 COG2440 Ferredoxin-like protein; ferredoxin-like protein FixX 91737 1171376000079 STU288_00395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferredoxin-like protein FixX YP_007901188.1 91450 D 1171376 CDS YP_007901189.1 482902629 91884..93224 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; metabolite transport protein 93224 1171376000080 STU288_00400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metabolite transport protein YP_007901189.1 91884 D 1171376 CDS YP_007901190.1 482902630 93313..93543 1 NC_021151.1 lipoprotein 93543 1171376000081 STU288_00405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901190.1 93313 D 1171376 CDS YP_007901191.1 482902631 93837..94253 1 NC_021151.1 hypothetical protein 94253 1171376000082 STU288_00410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901191.1 93837 D 1171376 CDS YP_007901192.1 482902632 complement(94477..94767) 1 NC_021151.1 UPF0379 protein yjfY Flags: Precursor 94767 1171376000083 STU288_00415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0379 protein yjfY Flags: Precursor YP_007901192.1 94477 R 1171376 CDS YP_007901193.1 482902633 95665..97554 1 NC_021151.1 COG3119 Arylsulfatase A and related enzymes; Choline-sulfatase 97554 1171376000084 STU288_00420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Choline-sulfatase YP_007901193.1 95665 D 1171376 CDS YP_007901194.1 482902634 97961..98491 1 NC_021151.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefF 98491 1171376000085 STU288_00425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione-regulated potassium-efflux system ancillary protein KefF YP_007901194.1 97961 D 1171376 CDS YP_007901195.1 482902635 98484..100346 1 NC_021151.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefC 100346 1171376000086 STU288_00430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione-regulated potassium-efflux system protein KefC YP_007901195.1 98484 D 1171376 CDS YP_007901196.1 482902636 100545..101024 1 NC_021151.1 COG0262 Dihydrofolate reductase; dihydrofolate reductase 101024 folA 1171376000087 folA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrofolate reductase YP_007901196.1 100545 D 1171376 CDS YP_007901197.1 482902637 complement(101130..101978) 1 NC_021151.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; diadenosine tetraphosphatase 101978 apaH 1171376000088 apaH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diadenosine tetraphosphatase YP_007901197.1 101130 R 1171376 CDS YP_007901198.1 482902638 complement(101989..102366) 1 NC_021151.1 COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; CO2+/MG2+ efflux protein ApaG 102366 apaG 1171376000089 apaG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CO2+/MG2+ efflux protein ApaG YP_007901198.1 101989 R 1171376 CDS YP_007901199.1 482902639 complement(102369..103190) 1 NC_021151.1 COG0030 Dimethyladenosine transferase (rRNA methylation); 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein 103190 ksgA 1171376000090 ksgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein YP_007901199.1 102369 R 1171376 CDS YP_007901200.1 482902640 complement(103187..104176) 1 NC_021151.1 COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 104176 pdxA 1171376000091 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxythreonine-4-phosphate dehydrogenase YP_007901200.1 103187 R 1171376 CDS YP_007901201.1 482902641 complement(104176..105462) 1 NC_021151.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase SurA 105462 1171376000092 STU288_00460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-prolyl cis-trans isomerase SurA YP_007901201.1 104176 R 1171376 CDS YP_007901202.1 482902642 complement(105516..107876) 1 NC_021151.1 COG1452 Organic solvent tolerance protein OstA; LPS assembly outer membrane complex protein LptD 107876 1171376000093 STU288_00465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LPS assembly outer membrane complex protein LptD YP_007901202.1 105516 R 1171376 CDS YP_007901203.1 482902643 108130..108942 1 NC_021151.1 COG1076 DnaJ-domain-containing proteins 1; Dna-J like membrane chaperone protein 108942 djlA 1171376000094 djlA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Dna-J like membrane chaperone protein YP_007901203.1 108130 D 1171376 CDS YP_007901204.1 482902644 complement(109037..109696) 1 NC_021151.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA/tRNA pseudouridine synthase A 109696 1171376000095 STU288_00475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA/tRNA pseudouridine synthase A YP_007901204.1 109037 R 1171376 CDS YP_007901205.1 482902645 complement(109708..112614) 1 NC_021151.1 COG0553 Superfamily II DNA/RNA helicases, SNF2 family; ATP-dependent helicase HepA 112614 1171376000096 STU288_00480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent helicase HepA YP_007901205.1 109708 R 1171376 CDS YP_007901206.1 482902646 complement(112788..115139) 1 NC_021151.1 COG0417 DNA polymerase elongation subunit (family B); DNA polymerase II 115139 1171376000097 STU288_00485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase II YP_007901206.1 112788 R 1171376 CDS YP_007901207.1 482902647 complement(115183..115803) 1 NC_021151.1 COG1434 Uncharacterized conserved protein; YdcF-like/sfiX involved in mureinsynthesis 115803 1171376000098 STU288_00490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YdcF-like/sfiX involved in mureinsynthesis YP_007901207.1 115183 R 1171376 CDS YP_007901208.1 482902648 116522..116941 1 NC_021151.1 hypothetical protein 116941 1171376000099 STU288_00495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901208.1 116522 D 1171376 CDS YP_007901209.1 482902649 complement(116947..117642) 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 117642 araD 1171376000100 araD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-ribulose-5-phosphate 4-epimerase YP_007901209.1 116947 R 1171376 CDS YP_007901210.1 482902650 complement(117783..119285) 1 NC_021151.1 COG2160 L-arabinose isomerase; L-arabinose isomerase 119285 1171376000101 STU288_00505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-arabinose isomerase YP_007901210.1 117783 R 1171376 CDS YP_007901211.1 482902651 complement(119296..121005) 1 NC_021151.1 COG1069 Ribulose kinase; ribulokinase 121005 1171376000102 STU288_00510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribulokinase YP_007901211.1 119296 R 1171376 CDS YP_007901212.1 482902652 121346..122191 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator AraC 122191 1171376000103 STU288_00515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator AraC YP_007901212.1 121346 D 1171376 CDS YP_007901213.1 482902653 122310..123077 1 NC_021151.1 COG0586 Uncharacterized membrane-associated protein; inner membrane protein 123077 1171376000104 STU288_00520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007901213.1 122310 D 1171376 CDS YP_007901214.1 482902654 complement(123116..123823) 1 NC_021151.1 COG3840 ABC-type thiamine transport system, ATPase component; thiamine transporter ATP-binding subunit 123823 thiQ 1171376000105 thiQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine transporter ATP-binding subunit YP_007901214.1 123116 R 1171376 CDS YP_007901215.1 482902655 complement(123807..125417) 1 NC_021151.1 COG1178 ABC-type Fe3+ transport system, permease component; thiamine transporter membrane protein 125417 thiP 1171376000106 thiP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine transporter membrane protein YP_007901215.1 123807 R 1171376 CDS YP_007901216.1 482902656 complement(125393..126376) 1 NC_021151.1 COG4143 ABC-type thiamine transport system, periplasmic component; thiamine transporter substrate binding subunit 126376 tbpA 1171376000107 tbpA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine transporter substrate binding subunit YP_007901216.1 125393 R 1171376 CDS YP_007901217.1 482902657 complement(126554..128212) 1 NC_021151.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; transcriptional regulator SgrR 128212 1171376000108 STU288_00540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator SgrR YP_007901217.1 126554 R 1171376 CDS YP_007901218.1 482902658 128305..128427 1 NC_021151.1 leuD 128427 1171376000109 STU288_00545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leuD YP_007901218.1 128305 D 1171376 CDS YP_007901219.1 482902659 complement(128763..129368) 1 NC_021151.1 COG0066 3-isopropylmalate dehydratase small subunit; isopropylmalate isomerase small subunit 129368 leuD 1171376000110 leuD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isopropylmalate isomerase small subunit YP_007901219.1 128763 R 1171376 CDS YP_007901220.1 482902660 complement(129379..130779) 1 NC_021151.1 COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit 130779 1171376000111 STU288_00555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isopropylmalate isomerase large subunit YP_007901220.1 129379 R 1171376 CDS YP_007901221.1 482902661 complement(130782..131873) 1 NC_021151.1 COG0473 Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 131873 1171376000112 STU288_00560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-isopropylmalate dehydrogenase YP_007901221.1 130782 R 1171376 CDS YP_007901222.1 482902662 complement(131873..133444) 1 NC_021151.1 COG0119 Isopropylmalate/homocitrate/citramalate synthases; 2-isopropylmalate synthase 133444 1171376000113 STU288_00565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-isopropylmalate synthase YP_007901222.1 131873 R 1171376 CDS YP_007901223.1 482902663 complement(133532..133618) 1 NC_021151.1 leu operon leader peptide 133618 1171376000114 STU288_00570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leu operon leader peptide YP_007901223.1 133532 R 1171376 CDS YP_007901224.1 482902664 134275..135219 1 NC_021151.1 COG0583 Transcriptional regulator; leucine transcriptional activator 135219 leuO 1171376000115 leuO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine transcriptional activator YP_007901224.1 134275 D 1171376 CDS YP_007901225.1 482902665 135604..137265 1 NC_021151.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 3 catalytic subunit 137265 1171376000116 STU288_00580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase 3 catalytic subunit YP_007901225.1 135604 D 1171376 CDS YP_007901226.1 482902666 137268..137759 1 NC_021151.1 COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 3 regulatory subunit 137759 ilvH 1171376000117 ilvH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase 3 regulatory subunit YP_007901226.1 137268 D 1171376 CDS YP_007901227.1 482902667 138043..139047 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator FruR 139047 1171376000118 STU288_00590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator FruR YP_007901227.1 138043 D 1171376 CDS YP_007901228.1 482902668 139653..140111 1 NC_021151.1 COG2001 Uncharacterized protein conserved in bacteria; cell division protein MraZ 140111 1171376000119 STU288_00595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein MraZ YP_007901228.1 139653 D 1171376 CDS YP_007901229.1 482902669 140113..141054 1 NC_021151.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; 16S rRNA m(4)C1402 methyltransferase 141054 1171376000120 STU288_00600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA m(4)C1402 methyltransferase YP_007901229.1 140113 D 1171376 CDS YP_007901230.1 482902670 141051..141416 1 NC_021151.1 COG3116 Cell division protein; cell division protein FtsL 141416 1171376000121 STU288_00605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsL YP_007901230.1 141051 D 1171376 CDS YP_007901231.1 482902671 141432..143198 1 NC_021151.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan synthase FtsI 143198 1171376000122 STU288_00610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidoglycan synthase FtsI YP_007901231.1 141432 D 1171376 CDS YP_007901232.1 482902672 143185..144672 1 NC_021151.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 144672 murE 1171376000123 murE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_007901232.1 143185 D 1171376 CDS YP_007901233.1 482902673 144669..146027 1 NC_021151.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146027 murF 1171376000124 murF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_007901233.1 144669 D 1171376 CDS YP_007901234.1 482902674 146021..147103 1 NC_021151.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 147103 mraY 1171376000125 mraY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_007901234.1 146021 D 1171376 CDS YP_007901235.1 482902675 147106..148422 1 NC_021151.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 148422 murD 1171376000126 murD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_007901235.1 147106 D 1171376 CDS YP_007901236.1 482902676 148422..149666 1 NC_021151.1 COG0772 Bacterial cell division membrane protein; cell division protein FtsW 149666 1171376000127 STU288_00635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsW YP_007901236.1 148422 D 1171376 CDS YP_007901237.1 482902677 149663..150730 1 NC_021151.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 150730 murG 1171376000128 murG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_007901237.1 149663 D 1171376 CDS YP_007901238.1 482902678 150849..152324 1 NC_021151.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 152324 murC 1171376000129 murC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylmuramate--L-alanine ligase YP_007901238.1 150849 D 1171376 CDS YP_007901239.1 482902679 152317..153237 1 NC_021151.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase 153237 ddl 1171376000130 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanine--D-alanine ligase YP_007901239.1 152317 D 1171376 CDS YP_007901240.1 482902680 153239..154069 1 NC_021151.1 COG1589 Cell division septal protein; cell division protein FtsQ 154069 1171376000131 STU288_00655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsQ YP_007901240.1 153239 D 1171376 CDS YP_007901241.1 482902681 154066..155328 1 NC_021151.1 COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 155328 ftsA 1171376000132 ftsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsA YP_007901241.1 154066 D 1171376 CDS YP_007901242.1 482902682 155389..156540 1 NC_021151.1 COG0206 Cell division GTPase; cell division protein FtsZ 156540 1171376000133 STU288_00665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsZ YP_007901242.1 155389 D 1171376 CDS YP_007901243.1 482902683 156641..157558 1 NC_021151.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 157558 lpxC 1171376000134 lpxC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_007901243.1 156641 D 1171376 CDS YP_007901244.1 482902684 157836..158333 1 NC_021151.1 SecA regulator SecM 158333 1171376000135 STU288_00675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SecA regulator SecM YP_007901244.1 157836 D 1171376 CDS YP_007901245.1 482902685 158395..161100 1 NC_021151.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 161100 1171376000136 STU288_00680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecA YP_007901245.1 158395 D 1171376 CDS YP_007901246.1 482902686 161252..161647 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphate pyrophosphohydrolase 161647 1171376000137 STU288_00685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside triphosphate pyrophosphohydrolase YP_007901246.1 161252 D 1171376 CDS YP_007901247.1 482902687 complement(161681..161815) 1 NC_021151.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo/keto reductase 161815 1171376000138 STU288_00690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldo/keto reductase YP_007901247.1 161681 R 1171376 CDS YP_007901248.1 482902688 161868..161972 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 161972 1171376000139 STU288_00695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007901248.1 161868 D 1171376 CDS YP_007901249.1 482902689 complement(161969..162160) 1 NC_021151.1 COG3024 Uncharacterized protein conserved in bacteria; DNA gyrase inhibitor 162160 1171376000140 STU288_00700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA gyrase inhibitor YP_007901249.1 161969 R 1171376 CDS YP_007901250.1 482902690 complement(162170..162913) 1 NC_021151.1 COG4582 Uncharacterized protein conserved in bacteria; hypothetical protein 162913 1171376000141 STU288_00705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901250.1 162170 R 1171376 CDS YP_007901251.1 482902691 complement(162913..163533) 1 NC_021151.1 COG0237 Dephospho-CoA kinase; dephospho-CoA kinase 163533 coaE 1171376000142 coaE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dephospho-CoA kinase YP_007901251.1 162913 R 1171376 CDS YP_007901252.1 482902692 163759..164802 1 NC_021151.1 COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 164802 1171376000143 STU288_00715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 guanosine 5'-monophosphate oxidoreductase YP_007901252.1 163759 D 1171376 CDS YP_007901253.1 482902693 complement(164833..166035) 1 NC_021151.1 COG1459 Type II secretory pathway, component PulF; type IV pilin biogenesis protein 166035 1171376000144 STU288_00720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type IV pilin biogenesis protein YP_007901253.1 164833 R 1171376 CDS YP_007901254.1 482902694 complement(166025..167410) 1 NC_021151.1 COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; hypothetical protein 167410 1171376000145 STU288_00725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901254.1 166025 R 1171376 CDS YP_007901255.1 482902695 complement(167420..167857) 1 NC_021151.1 COG4969 Tfp pilus assembly protein, major pilin PilA; major pilin subunit 167857 1171376000146 STU288_00730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major pilin subunit YP_007901255.1 167420 R 1171376 CDS YP_007901256.1 482902696 complement(168079..168972) 1 NC_021151.1 COG0157 Nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase 168972 1171376000147 STU288_00735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinolinate phosphoribosyltransferase YP_007901256.1 168079 R 1171376 CDS YP_007901257.1 482902697 169060..169623 1 NC_021151.1 COG3023 Negative regulator of beta-lactamase expression; N-acetyl-anhydromuranmyl-L-alanine amidase 169623 1171376000148 STU288_00740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetyl-anhydromuranmyl-L-alanine amidase YP_007901257.1 169060 D 1171376 CDS YP_007901258.1 482902698 169620..170474 1 NC_021151.1 COG3725 Membrane protein required for beta-lactamase induction; regulatory protein AmpE 170474 1171376000149 STU288_00745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein AmpE YP_007901258.1 169620 D 1171376 CDS YP_007901259.1 482902699 complement(170566..171516) 1 NC_021151.1 COG3940 Predicted beta-xylosidase; glycosyl hydrolase 171516 1171376000150 STU288_00750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl hydrolase YP_007901259.1 170566 R 1171376 CDS YP_007901260.1 482902700 complement(171516..172922) 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; Na+/galactoside symporter 172922 1171376000151 STU288_00755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Na+/galactoside symporter YP_007901260.1 171516 R 1171376 CDS YP_007901261.1 482902701 complement(173086..174456) 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transporter 174456 1171376000152 STU288_00760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aromatic amino acid transporter YP_007901261.1 173086 R 1171376 CDS YP_007901262.1 482902702 175022..175786 1 NC_021151.1 COG2186 Transcriptional regulators; transcriptional regulator PdhR 175786 pdhR 1171376000153 pdhR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator PdhR YP_007901262.1 175022 D 1171376 CDS YP_007901263.1 482902703 175946..178609 1 NC_021151.1 COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; pyruvate dehydrogenase subunit E1 178609 aceE 1171376000154 aceE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate dehydrogenase subunit E1 YP_007901263.1 175946 D 1171376 CDS YP_007901264.1 482902704 178624..180513 1 NC_021151.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; pyruvate dehydrogenase dihydrolipoyltransacetylase 180513 aceF 1171376000155 aceF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate dehydrogenase dihydrolipoyltransacetylase YP_007901264.1 178624 D 1171376 CDS YP_007901265.1 482902705 180713..182137 1 NC_021151.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; dihydrolipoamide dehydrogenase 182137 1171376000156 STU288_00780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrolipoamide dehydrogenase YP_007901265.1 180713 D 1171376 CDS YP_007901266.1 482902706 182426..182710 1 NC_021151.1 putative secreted protein 182710 1171376000157 STU288_00785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative secreted protein YP_007901266.1 182426 D 1171376 CDS YP_007901267.1 482902707 complement(182748..183539) 1 NC_021151.1 hypothetical protein 183539 1171376000158 STU288_00790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901267.1 182748 R 1171376 CDS YP_007901268.1 482902708 complement(183552..185174) 1 NC_021151.1 hypothetical protein 185174 1171376000159 STU288_00795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901268.1 183552 R 1171376 CDS YP_007901269.1 482902709 185563..188160 1 NC_021151.1 COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 188160 1171376000160 STU288_00800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_007901269.1 185563 D 1171376 CDS YP_007901270.1 482902710 complement(188221..189063) 1 NC_021151.1 COG3183 Predicted restriction endonuclease; restriction endonuclease 189063 1171376000161 STU288_00805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 restriction endonuclease YP_007901270.1 188221 R 1171376 CDS YP_007901271.1 482902711 189309..189671 1 NC_021151.1 COG3112 Uncharacterized protein conserved in bacteria; hypothetical protein 189671 1171376000162 STU288_00810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901271.1 189309 D 1171376 CDS YP_007901272.1 482902712 189906..190859 1 NC_021151.1 2-keto-3-deoxygluconate permease 190859 1171376000163 STU288_00815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-keto-3-deoxygluconate permease YP_007901272.1 189906 D 1171376 CDS YP_007901273.1 482902713 190856..192127 1 NC_021151.1 COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 192127 1171376000164 STU288_00820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901273.1 190856 D 1171376 CDS YP_007901274.1 482902714 192117..193100 1 NC_021151.1 COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 2 193100 pdxA 1171376000165 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxythreonine-4-phosphate dehydrogenase 2 YP_007901274.1 192117 D 1171376 CDS YP_007901275.1 482902715 193110..193877 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; putative HTH-type transcriptional regulator ygbI 193877 1171376000166 STU288_00830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator ygbI YP_007901275.1 193110 D 1171376 CDS YP_007901276.1 482902716 complement(193907..194701) 1 NC_021151.1 COG1586 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase 194701 1171376000167 STU288_00835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-adenosylmethionine decarboxylase YP_007901276.1 193907 R 1171376 CDS YP_007901277.1 482902717 complement(194722..195582) 1 NC_021151.1 COG0421 Spermidine synthase; spermidine synthase 195582 1171376000168 STU288_00840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 spermidine synthase YP_007901277.1 194722 R 1171376 CDS YP_007901278.1 482902718 complement(195689..196036) 1 NC_021151.1 hypothetical protein 196036 1171376000169 STU288_00845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901278.1 195689 R 1171376 CDS YP_007901279.1 482902719 196238..197848 1 NC_021151.1 COG2132 Putative multicopper oxidases; multicopper oxidase 197848 1171376000170 STU288_00850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multicopper oxidase YP_007901279.1 196238 D 1171376 CDS YP_007901280.1 482902720 complement(197926..200316) 1 NC_021151.1 COG4993 Glucose dehydrogenase; glucose dehydrogenase 200316 1171376000171 STU288_00855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose dehydrogenase YP_007901280.1 197926 R 1171376 CDS YP_007901281.1 482902721 200522..201058 1 NC_021151.1 COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 201058 1171376000172 STU288_00860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypoxanthine phosphoribosyltransferase YP_007901281.1 200522 D 1171376 CDS YP_007901282.1 482902722 complement(201116..201778) 1 NC_021151.1 COG0288 Carbonic anhydrase; carbonic anhydrase 201778 1171376000173 STU288_00865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbonic anhydrase YP_007901282.1 201116 R 1171376 CDS YP_007901283.1 482902723 201887..202813 1 NC_021151.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 202813 1171376000174 STU288_00870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007901283.1 201887 D 1171376 CDS YP_007901284.1 482902724 202810..203580 1 NC_021151.1 COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease 203580 1171376000175 STU288_00875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transport permease YP_007901284.1 202810 D 1171376 CDS YP_007901285.1 482902725 complement(203697..204776) 1 NC_021151.1 fimbrial protein StiH 204776 1171376000176 STU288_00880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein StiH YP_007901285.1 203697 R 1171376 CDS YP_007901286.1 482902726 complement(204785..207331) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StiC 207331 1171376000177 STU288_00885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein StiC YP_007901286.1 204785 R 1171376 CDS YP_007901287.1 482902727 complement(207358..208041) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StiB 208041 1171376000178 STU288_00890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein StiB YP_007901287.1 207358 R 1171376 CDS YP_007901288.1 482902728 complement(208089..208628) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein StiA 208628 1171376000179 STU288_00895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein StiA YP_007901288.1 208089 R 1171376 CDS YP_007901289.1 482902729 208999..209439 1 NC_021151.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system transporter subunit IIA 209439 1171376000180 STU288_00900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system transporter subunit IIA YP_007901289.1 208999 D 1171376 CDS YP_007901290.1 482902730 209507..210730 1 NC_021151.1 COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 210730 1171376000181 STU288_00905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polysaccharide deacetylase YP_007901290.1 209507 D 1171376 CDS YP_007901291.1 482902731 complement(210737..211117) 1 NC_021151.1 COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 211117 1171376000182 STU288_00910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate alpha-decarboxylase YP_007901291.1 210737 R 1171376 CDS YP_007901292.1 482902732 complement(211212..212066) 1 NC_021151.1 COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 212066 panC 1171376000183 panC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pantoate--beta-alanine ligase YP_007901292.1 211212 R 1171376 CDS YP_007901293.1 482902733 complement(212192..212983) 1 NC_021151.1 COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 212983 panB 1171376000184 panB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_007901293.1 212192 R 1171376 CDS YP_007901294.1 482902734 complement(213104..213583) 1 NC_021151.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 213583 1171376000185 STU288_00925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase YP_007901294.1 213104 R 1171376 CDS YP_007901295.1 482902735 complement(213580..214998) 1 NC_021151.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase I 214998 pcnB 1171376000186 pcnB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 poly(A) polymerase I YP_007901295.1 213580 R 1171376 CDS YP_007901296.1 482902736 complement(215139..216035) 1 NC_021151.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA(Asp) ligase 216035 1171376000187 STU288_00935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamyl-Q tRNA(Asp) ligase YP_007901296.1 215139 R 1171376 CDS YP_007901297.1 482902737 complement(216104..216559) 1 NC_021151.1 COG1734 DnaK suppressor protein; RNA polymerase-binding transcription factor 216559 dksA 1171376000188 dksA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase-binding transcription factor YP_007901297.1 216104 R 1171376 CDS YP_007901298.1 482902738 complement(216736..217440) 1 NC_021151.1 COG1489 DNA-binding protein, stimulates sugar fermentation; DNA-binding transcriptional regulator 217440 1171376000189 STU288_00945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007901298.1 216736 R 1171376 CDS YP_007901299.1 482902739 complement(217457..217987) 1 NC_021151.1 COG1514 2'-5' RNA ligase; 2'-5' RNA ligase 217987 1171376000190 STU288_00950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2'-5' RNA ligase YP_007901299.1 217457 R 1171376 CDS YP_007901300.1 482902740 218060..220489 1 NC_021151.1 COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpB 220489 1171376000191 STU288_00955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase HrpB YP_007901300.1 218060 D 1171376 CDS YP_007901301.1 482902741 220630..223152 1 NC_021151.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); bifunctional glycosyl transferase/transpeptidase 223152 mrcB 1171376000192 mrcB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glycosyl transferase/transpeptidase YP_007901301.1 220630 D 1171376 CDS YP_007901302.1 482902742 223445..225634 1 NC_021151.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrichrome outer membrane transporter 225634 1171376000193 STU288_00965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrichrome outer membrane transporter YP_007901302.1 223445 D 1171376 CDS YP_007901303.1 482902743 225683..226480 1 NC_021151.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-hydroxamate transporter ATP-binding subunit 226480 1171376000194 STU288_00970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-hydroxamate transporter ATP-binding subunit YP_007901303.1 225683 D 1171376 CDS YP_007901304.1 482902744 226480..227370 1 NC_021151.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron-hydroxamate transporter substrate-binding subunit 227370 1171376000195 STU288_00975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-hydroxamate transporter substrate-binding subunit YP_007901304.1 226480 D 1171376 CDS YP_007901305.1 482902745 227367..229424 1 NC_021151.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-hydroxamate transporter permease subunit 229424 1171376000196 STU288_00980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-hydroxamate transporter permease subunit YP_007901305.1 227367 D 1171376 CDS YP_007901306.1 482902746 230364..230924 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit StfA 230924 1171376000197 STU288_00985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial subunit StfA YP_007901306.1 230364 D 1171376 CDS YP_007901307.1 482902747 231010..233667 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StfC 233667 1171376000198 STU288_00990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein StfC YP_007901307.1 231010 D 1171376 CDS YP_007901308.1 482902748 233685..234437 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StfD 234437 1171376000199 STU288_00995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein StfD YP_007901308.1 233685 D 1171376 CDS YP_007901309.1 482902749 234456..234968 1 NC_021151.1 minor fimbrial subunit StfE 234968 1171376000200 STU288_01000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 minor fimbrial subunit StfE YP_007901309.1 234456 D 1171376 CDS YP_007901310.1 482902750 234965..235441 1 NC_021151.1 minor fimbrial subunit StfF 235441 1171376000201 STU288_01005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 minor fimbrial subunit StfF YP_007901310.1 234965 D 1171376 CDS YP_007901311.1 482902751 235441..235971 1 NC_021151.1 minor fimbrial subunit StfG 235971 1171376000202 STU288_01010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 minor fimbrial subunit StfG YP_007901311.1 235441 D 1171376 CDS YP_007901312.1 482902752 235971..236810 1 NC_021151.1 hypothetical protein 236810 1171376000203 STU288_01015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901312.1 235971 D 1171376 CDS YP_007901313.1 482902753 complement(236918..238198) 1 NC_021151.1 COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 238198 1171376000204 STU288_01020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate-1-semialdehyde aminotransferase YP_007901313.1 236918 R 1171376 CDS YP_007901314.1 482902754 238368..239789 1 NC_021151.1 COG0038 Chloride channel protein EriC; chloride channel protein 239789 1171376000205 STU288_01025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chloride channel protein YP_007901314.1 238368 D 1171376 CDS YP_007901315.1 482902755 239871..240215 1 NC_021151.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster insertion protein ErpA 240215 1171376000206 STU288_01030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-sulfur cluster insertion protein ErpA YP_007901315.1 239871 D 1171376 CDS YP_007901316.1 482902756 complement(240316..240939) 1 NC_021151.1 COG2860 Predicted membrane protein; hypothetical protein 240939 1171376000207 STU288_01035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901316.1 240316 R 1171376 CDS YP_007901317.1 482902757 complement(240976..241776) 1 NC_021151.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; vitamin B12-transporter protein BtuF 241776 1171376000208 STU288_01040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 vitamin B12-transporter protein BtuF YP_007901317.1 240976 R 1171376 CDS YP_007901318.1 482902758 complement(241769..242467) 1 NC_021151.1 COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 242467 1171376000209 STU288_01045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_007901318.1 241769 R 1171376 CDS YP_007901319.1 482902759 242552..244069 1 NC_021151.1 COG0232 dGTP triphosphohydrolase; deoxyguanosinetriphosphate triphosphohydrolase 244069 dgt 1171376000210 dgt Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxyguanosinetriphosphate triphosphohydrolase YP_007901319.1 242552 D 1171376 CDS YP_007901320.1 482902760 244199..245626 1 NC_021151.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 245626 1171376000211 STU288_01055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine endoprotease YP_007901320.1 244199 D 1171376 CDS YP_007901321.1 482902761 245779..246936 1 NC_021151.1 COG3835 Sugar diacid utilization regulator; carbohydrate diacid transcriptional activator CdaR 246936 1171376000212 STU288_01060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbohydrate diacid transcriptional activator CdaR YP_007901321.1 245779 D 1171376 CDS YP_007901322.1 482902762 complement(247025..247411) 1 NC_021151.1 hypothetical protein 247411 1171376000213 STU288_01065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901322.1 247025 R 1171376 CDS YP_007901323.1 482902763 247658..248959 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein 248959 1171376000214 STU288_01070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007901323.1 247658 D 1171376 CDS YP_007901324.1 482902764 complement(248996..249820) 1 NC_021151.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 249820 dapD 1171376000215 dapD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_007901324.1 248996 R 1171376 CDS YP_007901325.1 482902765 complement(249850..252522) 1 NC_021151.1 COG2844 UTP:GlnB (protein PII) uridylyltransferase; PII uridylyl-transferase 252522 1171376000216 STU288_01080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PII uridylyl-transferase YP_007901325.1 249850 R 1171376 CDS YP_007901326.1 482902766 complement(252759..253553) 1 NC_021151.1 COG0024 Methionine aminopeptidase; methionine aminopeptidase 253553 1171376000217 STU288_01085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionine aminopeptidase YP_007901326.1 252759 R 1171376 CDS YP_007901327.1 482902767 254004..254729 1 NC_021151.1 COG0052 Ribosomal protein S2; 30S ribosomal protein S2 254729 rpsB 1171376000218 rpsB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S2 YP_007901327.1 254004 D 1171376 CDS YP_007901328.1 482902768 254987..255838 1 NC_021151.1 COG0264 Translation elongation factor Ts; elongation factor Ts 255838 tsf 1171376000219 tsf Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor Ts YP_007901328.1 254987 D 1171376 CDS YP_007901329.1 482902769 255983..256708 1 NC_021151.1 COG0528 Uridylate kinase; uridylate kinase 256708 pyrH 1171376000220 pyrH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uridylate kinase YP_007901329.1 255983 D 1171376 CDS YP_007901330.1 482902770 256855..257412 1 NC_021151.1 COG0233 Ribosome recycling factor; ribosome recycling factor 257412 frr 1171376000221 frr Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome recycling factor YP_007901330.1 256855 D 1171376 CDS YP_007901331.1 482902771 257553..258749 1 NC_021151.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 258749 1171376000222 STU288_01110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_007901331.1 257553 D 1171376 CDS YP_007901332.1 482902772 259062..259820 1 NC_021151.1 COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 259820 1171376000223 STU288_01115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl pyrophosphate synthase YP_007901332.1 259062 D 1171376 CDS YP_007901333.1 482902773 259833..260690 1 NC_021151.1 COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthase 260690 cdsA 1171376000224 cdsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CDP-diglyceride synthase YP_007901333.1 259833 D 1171376 CDS YP_007901334.1 482902774 260702..262054 1 NC_021151.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metallopeptidase RseP 262054 1171376000225 STU288_01125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc metallopeptidase RseP YP_007901334.1 260702 D 1171376 CDS YP_007901335.1 482902775 262086..264500 1 NC_021151.1 COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly factor YaeT 264500 1171376000226 STU288_01130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein assembly factor YaeT YP_007901335.1 262086 D 1171376 CDS YP_007901336.1 482902776 264623..265108 1 NC_021151.1 COG2825 Outer membrane protein; periplasmic chaperone 265108 1171376000227 STU288_01135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic chaperone YP_007901336.1 264623 D 1171376 CDS YP_007901337.1 482902777 265112..266137 1 NC_021151.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 266137 lpxD 1171376000228 lpxD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_007901337.1 265112 D 1171376 CDS YP_007901338.1 482902778 266243..266698 1 NC_021151.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 266698 fabZ 1171376000229 fabZ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 (3R)-hydroxymyristoyl-ACP dehydratase YP_007901338.1 266243 D 1171376 CDS YP_007901339.1 482902779 266702..267490 1 NC_021151.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 267490 1171376000230 STU288_01150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylglucosamine acyltransferase YP_007901339.1 266702 D 1171376 CDS YP_007901340.1 482902780 267490..268638 1 NC_021151.1 COG0763 Lipid A disaccharide synthetase; lipid-A-disaccharide synthase 268638 lpxB 1171376000231 lpxB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid-A-disaccharide synthase YP_007901340.1 267490 D 1171376 CDS YP_007901341.1 482902781 268635..269231 1 NC_021151.1 COG0164 Ribonuclease HII; ribonuclease HII 269231 rnhB 1171376000232 rnhB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease HII YP_007901341.1 268635 D 1171376 CDS YP_007901342.1 482902782 269255..272737 1 NC_021151.1 COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 272737 dnaE 1171376000233 dnaE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit alpha YP_007901342.1 269255 D 1171376 CDS YP_007901343.1 482902783 272750..273709 1 NC_021151.1 COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273709 1171376000234 STU288_01170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_007901343.1 272750 D 1171376 CDS YP_007901344.1 482902784 273890..275653 1 NC_021151.1 COG3979 Uncharacterized protein contain chitin-binding domain type 3; Basic 30 kDa endochitinase Flags: Precursor 275653 1171376000235 STU288_01175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Basic 30 kDa endochitinase Flags: Precursor YP_007901344.1 273890 D 1171376 CDS YP_007901345.1 482902785 275729..277870 1 NC_021151.1 COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase LdcC 277870 1171376000236 STU288_01180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysine decarboxylase LdcC YP_007901345.1 275729 D 1171376 CDS YP_007901346.1 482902786 277926..278315 1 NC_021151.1 COG0346 Lactoylglutathione lyase and related lyases; lyase 278315 1171376000237 STU288_01185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lyase YP_007901346.1 277926 D 1171376 CDS YP_007901347.1 482902787 278378..279670 1 NC_021151.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine ligase 279670 tilS 1171376000238 tilS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA(Ile)-lysidine ligase YP_007901347.1 278378 D 1171376 CDS YP_007901348.1 482902788 complement(279754..280014) 1 NC_021151.1 COG4568 Transcriptional antiterminator; Rho-binding antiterminator 280014 1171376000239 STU288_01195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Rho-binding antiterminator YP_007901348.1 279754 R 1171376 CDS YP_007901349.1 482902789 complement(280001..280201) 1 NC_021151.1 hypothetical protein 280201 1171376000240 STU288_01200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901349.1 280001 R 1171376 CDS YP_007901350.1 482902790 280399..280944 1 NC_021151.1 COG4681 Uncharacterized protein conserved in bacteria; hypothetical protein 280944 1171376000241 STU288_01205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901350.1 280399 D 1171376 CDS YP_007901351.1 482902791 280941..281363 1 NC_021151.1 COG1186 Protein chain release factor B; hypothetical protein 281363 1171376000242 STU288_01210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901351.1 280941 D 1171376 CDS YP_007901352.1 482902792 complement(282174..283892) 1 NC_021151.1 COG0442 Prolyl-tRNA synthetase; prolyl-tRNA ligase 283892 1171376000243 STU288_01225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prolyl-tRNA ligase YP_007901352.1 282174 R 1171376 CDS YP_007901353.1 482902793 complement(284003..284710) 1 NC_021151.1 COG1720 Uncharacterized conserved protein; putative regulatory protein 284710 1171376000244 STU288_01230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007901353.1 284003 R 1171376 CDS YP_007901354.1 482902794 complement(284707..285111) 1 NC_021151.1 outer membrane lipoprotein 285111 rcsF 1171376000245 rcsF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007901354.1 284707 R 1171376 CDS YP_007901355.1 482902795 complement(285230..286045) 1 NC_021151.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; DL-methionine transporter substrate-binding subunit 286045 metQ 1171376000246 metQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DL-methionine transporter substrate-binding subunit YP_007901355.1 285230 R 1171376 CDS YP_007901356.1 482902796 complement(286084..286737) 1 NC_021151.1 COG2011 ABC-type metal ion transport system, permease component; DL-methionine transporter permease subunit 286737 1171376000247 STU288_01245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DL-methionine transporter permease subunit YP_007901356.1 286084 R 1171376 CDS YP_007901357.1 482902797 complement(286730..287761) 1 NC_021151.1 COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 287761 metN 1171376000248 metN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DL-methionine transporter ATP-binding subunit YP_007901357.1 286730 R 1171376 CDS YP_007901358.1 482902798 287951..288517 1 NC_021151.1 COG0241 Histidinol phosphatase and related phosphatases; D,D-heptose 1,7-bisphosphate phosphatase 288517 1171376000249 STU288_01255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D,D-heptose 1,7-bisphosphate phosphatase YP_007901358.1 287951 D 1171376 CDS YP_007901359.1 482902799 294552..295007 1 NC_021151.1 hypothetical protein 295007 1171376000255 STU288_01260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901359.1 294552 D 1171376 CDS YP_007901360.1 482902800 295111..296412 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate transporter 296412 1171376000256 STU288_01265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-ketoglutarate transporter YP_007901360.1 295111 D 1171376 CDS YP_007901361.1 482902801 complement(296409..296732) 1 NC_021151.1 COG5544 Predicted periplasmic lipoprotein; lipoprotein 296732 1171376000257 STU288_01270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901361.1 296409 R 1171376 CDS YP_007901362.1 482902802 complement(296777..298132) 1 NC_021151.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; phosphatidylserine synthase 298132 pssA 1171376000258 pssA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatidylserine synthase YP_007901362.1 296777 R 1171376 CDS YP_007901363.1 482902803 complement(298247..300907) 1 NC_021151.1 COG1042 Acyl-CoA synthetase (NDP forming); protein lysine acetyltransferase 300907 1171376000259 STU288_01280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein lysine acetyltransferase YP_007901363.1 298247 R 1171376 CDS YP_007901364.1 482902804 complement(300961..301641) 1 NC_021151.1 COG3148 Uncharacterized conserved protein; DTW domain-containing protein 301641 1171376000260 STU288_01285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DTW domain-containing protein YP_007901364.1 300961 R 1171376 CDS YP_007901365.1 482902805 complement(301714..302133) 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2 302133 1171376000261 STU288_01290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioredoxin 2 YP_007901365.1 301714 R 1171376 CDS YP_007901366.1 482902806 302337..303374 1 NC_021151.1 COG0566 rRNA methylases; methyltransferase 303374 1171376000262 STU288_01295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyltransferase YP_007901366.1 302337 D 1171376 CDS YP_007901367.1 482902807 complement(303490..304179) 1 NC_021151.1 COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 304179 1171376000263 STU288_01300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uracil-DNA glycosylase YP_007901367.1 303490 R 1171376 CDS YP_007901368.1 482902808 304498..304881 1 NC_021151.1 COG3445 Acid-induced glycyl radical enzyme; autonomous glycyl radical cofactor GrcA 304881 1171376000264 STU288_01305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autonomous glycyl radical cofactor GrcA YP_007901368.1 304498 D 1171376 CDS YP_007901369.1 482902809 complement(304943..305530) 1 NC_021151.1 COG1280 Putative threonine efflux protein; cysteine/O-acetylserine exporter 305530 1171376000265 STU288_01310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine/O-acetylserine exporter YP_007901369.1 304943 R 1171376 CDS YP_007901370.1 482902810 305633..306532 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 306532 1171376000266 STU288_01315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007901370.1 305633 D 1171376 CDS YP_007901371.1 482902811 complement(306550..307884) 1 NC_021151.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase SrmB 307884 1171376000267 STU288_01320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase SrmB YP_007901371.1 306550 R 1171376 CDS YP_007901372.1 482902812 308015..308752 1 NC_021151.1 COG4123 Predicted O-methyltransferase; transferase 308752 1171376000268 STU288_01325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transferase YP_007901372.1 308015 D 1171376 CDS YP_007901373.1 482902813 complement(308737..310359) 1 NC_021151.1 COG0029 Aspartate oxidase; L-aspartate oxidase 310359 1171376000269 STU288_01330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-aspartate oxidase YP_007901373.1 308737 R 1171376 CDS YP_007901374.1 482902814 310784..311359 1 NC_021151.1 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor RpoE 311359 1171376000270 STU288_01335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase sigma factor RpoE YP_007901374.1 310784 D 1171376 CDS YP_007901375.1 482902815 311391..312041 1 NC_021151.1 COG3073 Negative regulator of sigma E activity; anti-RNA polymerase sigma factor SigE 312041 1171376000271 STU288_01340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-RNA polymerase sigma factor SigE YP_007901375.1 311391 D 1171376 CDS YP_007901376.1 482902816 312041..312997 1 NC_021151.1 COG3026 Negative regulator of sigma E activity; anti-sigma E factor 312997 rseB 1171376000272 rseB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-sigma E factor YP_007901376.1 312041 D 1171376 CDS YP_007901377.1 482902817 312994..313473 1 NC_021151.1 COG3086 Positive regulator of sigma E activity; SoxR reducing system protein RseC 313473 1171376000273 STU288_01350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SoxR reducing system protein RseC YP_007901377.1 312994 D 1171376 CDS YP_007901378.1 482902818 313971..315200 1 NC_021151.1 COG0582 Integrase; bacteriophage integrase 315200 1171376000274 STU288_01355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage integrase YP_007901378.1 313971 D 1171376 CDS YP_007901379.1 482902819 complement(315178..315462) 1 NC_021151.1 excisionase-like protein 315462 1171376000275 STU288_01360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excisionase-like protein YP_007901379.1 315178 R 1171376 CDS YP_007901380.1 482902820 complement(315503..315742) 1 NC_021151.1 putative cytoplasmic protein 315742 1171376000276 STU288_01365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901380.1 315503 R 1171376 CDS YP_007901381.1 482902821 complement(316906..319791) 1 NC_021151.1 gifsy-1 prophage RecE 319791 1171376000277 STU288_01380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage RecE YP_007901381.1 316906 R 1171376 CDS YP_007901382.1 482902822 complement(319918..320217) 1 NC_021151.1 Gifsy-2 prophage protein 320217 1171376000278 STU288_01385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-2 prophage protein YP_007901382.1 319918 R 1171376 CDS YP_007901383.1 482902823 complement(320701..321117) 1 NC_021151.1 COG1396 Predicted transcriptional regulators; regulatory protein 321117 1171376000279 STU288_01390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007901383.1 320701 R 1171376 CDS YP_007901384.1 482902824 321231..321470 1 NC_021151.1 hypothetical protein 321470 1171376000280 STU288_01395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901384.1 321231 D 1171376 CDS YP_007901385.1 482902825 321661..321810 1 NC_021151.1 Gifsy-1 prophage cI protein 321810 1171376000281 STU288_01400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-1 prophage cI protein YP_007901385.1 321661 D 1171376 CDS YP_007901386.1 482902826 321895..322878 1 NC_021151.1 gifsy-1 prophage PrpO 322878 1171376000282 STU288_01405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage PrpO YP_007901386.1 321895 D 1171376 CDS YP_007901387.1 482902827 322881..323630 1 NC_021151.1 COG1484 DNA replication protein; replication protein 323630 1171376000283 STU288_01410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein YP_007901387.1 322881 D 1171376 CDS YP_007901388.1 482902828 323641..323988 1 NC_021151.1 putative DNA-binding protein 323988 1171376000284 STU288_01415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA-binding protein YP_007901388.1 323641 D 1171376 CDS YP_007901389.1 482902829 323985..324296 1 NC_021151.1 conserved hypothetical bacteriophage protein 324296 1171376000285 STU288_01420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conserved hypothetical bacteriophage protein YP_007901389.1 323985 D 1171376 CDS YP_007901390.1 482902830 324395..324664 1 NC_021151.1 hypothetical protein 324664 1171376000286 STU288_01425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901390.1 324395 D 1171376 CDS YP_007901391.1 482902831 324956..325189 1 NC_021151.1 COG1344 Flagellin and related hook-associated proteins; DNA-damage-inducible protein I 325189 1171376000287 STU288_01430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-damage-inducible protein I YP_007901391.1 324956 D 1171376 CDS YP_007901392.1 482902832 325605..326207 1 NC_021151.1 Gifsy-2 prophage protein 326207 1171376000288 STU288_01435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-2 prophage protein YP_007901392.1 325605 D 1171376 CDS YP_007901393.1 482902833 326207..326413 1 NC_021151.1 hypothetical protein 326413 1171376000289 STU288_01440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901393.1 326207 D 1171376 CDS YP_007901394.1 482902834 326416..327027 1 NC_021151.1 Protein NinG 327027 1171376000290 STU288_01445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein NinG YP_007901394.1 326416 D 1171376 CDS YP_007901395.1 482902835 327160..327957 1 NC_021151.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; antitermination protein Q 327957 1171376000291 STU288_01450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antitermination protein Q YP_007901395.1 327160 D 1171376 CDS YP_007901396.1 482902836 327993..328340 1 NC_021151.1 Gifsy-2 prophage protein 328340 1171376000292 STU288_01455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-2 prophage protein YP_007901396.1 327993 D 1171376 CDS YP_007901397.1 482902837 complement(328775..329224) 1 NC_021151.1 putative lipoprotein 329224 1171376000293 STU288_01460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein YP_007901397.1 328775 R 1171376 CDS YP_007901398.1 482902838 complement(329585..330271) 1 NC_021151.1 hypothetical protein 330271 1171376000294 STU288_01465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901398.1 329585 R 1171376 CDS YP_007901399.1 482902839 330541..330876 1 NC_021151.1 putative bacteriophage holin 330876 1171376000295 STU288_01470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative bacteriophage holin YP_007901399.1 330541 D 1171376 CDS YP_007901400.1 482902840 330863..331312 1 NC_021151.1 COG3772 Phage-related lysozyme (muraminidase); bacteriophage lysozyme 331312 1171376000296 STU288_01475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage lysozyme YP_007901400.1 330863 D 1171376 CDS YP_007901401.1 482902841 331330..331809 1 NC_021151.1 bacteriophage lysis protein 331809 1171376000297 STU288_01480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage lysis protein YP_007901401.1 331330 D 1171376 CDS YP_007901402.1 482902842 332016..332549 1 NC_021151.1 hypothetical protein 332549 1171376000298 STU288_01485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901402.1 332016 D 1171376 CDS YP_007901403.1 482902843 332641..334644 1 NC_021151.1 COG5525 Bacteriophage tail assembly protein; phage terminase large subunit 334644 1171376000299 STU288_01490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage terminase large subunit YP_007901403.1 332641 D 1171376 CDS YP_007901404.1 482902844 334641..334847 1 NC_021151.1 hypothetical protein 334847 1171376000300 STU288_01495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901404.1 334641 D 1171376 CDS YP_007901405.1 482902845 334844..336391 1 NC_021151.1 COG5511 Bacteriophage capsid protein; phage portal protein lambda family 336391 1171376000301 STU288_01500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage portal protein lambda family YP_007901405.1 334844 D 1171376 CDS YP_007901406.1 482902846 336342..338396 1 NC_021151.1 COG0740 Protease subunit of ATP-dependent Clp proteases; Clp protease-like protein 338396 1171376000302 STU288_01505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Clp protease-like protein YP_007901406.1 336342 D 1171376 CDS YP_007901407.1 482902847 338487..338810 1 NC_021151.1 COG5471 Uncharacterized conserved protein; recombinase A 338810 1171376000303 STU288_01510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombinase A YP_007901407.1 338487 D 1171376 CDS YP_007901408.1 482902848 338803..339102 1 NC_021151.1 hypothetical protein 339102 1171376000304 STU288_01515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901408.1 338803 D 1171376 CDS YP_007901409.1 482902849 339083..339649 1 NC_021151.1 prophage minor tail protein Z 339649 1171376000305 STU288_01520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prophage minor tail protein Z YP_007901409.1 339083 D 1171376 CDS YP_007901410.1 482902850 339646..340047 1 NC_021151.1 phage minor tail protein U 340047 1171376000306 STU288_01525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage minor tail protein U YP_007901410.1 339646 D 1171376 CDS YP_007901411.1 482902851 340059..340808 1 NC_021151.1 COG5492 Bacterial surface proteins containing Ig-like domains; Major tail protein V 340808 1171376000307 STU288_01530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Major tail protein V YP_007901411.1 340059 D 1171376 CDS YP_007901412.1 482902852 340854..341252 1 NC_021151.1 Minor tail protein G 341252 1171376000308 STU288_01535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein G YP_007901412.1 340854 D 1171376 CDS YP_007901413.1 482902853 341315..341578 1 NC_021151.1 Minor tail protein T 341578 1171376000309 STU288_01540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein T YP_007901413.1 341315 D 1171376 CDS YP_007901414.1 482902854 341559..344645 1 NC_021151.1 COG5281 Phage-related minor tail protein; gifsy-1 prophage VmtH 344645 1171376000310 STU288_01545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage VmtH YP_007901414.1 341559 D 1171376 CDS YP_007901415.1 482902855 344645..344974 1 NC_021151.1 COG4718 Phage-related protein; phage minor tail protein 344974 1171376000311 STU288_01550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage minor tail protein YP_007901415.1 344645 D 1171376 CDS YP_007901416.1 482902856 345073..345570 1 NC_021151.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; Outer membrane protein X Flags: Precursor 345570 1171376000312 STU288_01555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Outer membrane protein X Flags: Precursor YP_007901416.1 345073 D 1171376 CDS YP_007901417.1 482902857 complement(345687..346220) 1 NC_021151.1 COG2032 Cu/Zn superoxide dismutase; Cu/Zn superoxide dismutase 346220 1171376000313 STU288_01560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cu/Zn superoxide dismutase YP_007901417.1 345687 R 1171376 CDS YP_007901418.1 482902858 346310..347005 1 NC_021151.1 COG4672 Phage-related protein; phage minor tail protein L 347005 1171376000314 STU288_01565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage minor tail protein L YP_007901418.1 346310 D 1171376 CDS YP_007901419.1 482902859 347015..347752 1 NC_021151.1 COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; bacteriophage minor tail protein 347752 1171376000315 STU288_01570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage minor tail protein YP_007901419.1 347015 D 1171376 CDS YP_007901420.1 482902860 347812..348354 1 NC_021151.1 COG4723 Phage-related protein, tail component; tail assembly protein 348354 1171376000316 STU288_01575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tail assembly protein YP_007901420.1 347812 D 1171376 CDS YP_007901421.1 482902861 348426..350873 1 NC_021151.1 COG4733 Phage-related protein, tail component; host specificity protein J 350873 1171376000317 STU288_01580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 host specificity protein J YP_007901421.1 348426 D 1171376 CDS YP_007901422.1 482902862 350900..351775 1 NC_021151.1 COG4733 Phage-related protein, tail component; hypothetical protein 351775 1171376000318 STU288_01585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901422.1 350900 D 1171376 CDS YP_007901423.1 482902863 351814..352056 1 NC_021151.1 hypothetical protein 352056 1171376000319 STU288_01590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901423.1 351814 D 1171376 CDS YP_007901424.1 482902864 352110..354548 1 NC_021151.1 Tail Fiber Protein 354548 1171376000320 STU288_01595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Tail Fiber Protein YP_007901424.1 352110 D 1171376 CDS YP_007901425.1 482902865 354548..355129 1 NC_021151.1 tail fiber assembly like-protein 355129 1171376000321 STU288_01600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tail fiber assembly like-protein YP_007901425.1 354548 D 1171376 CDS YP_007901426.1 482902866 355605..356573 1 NC_021151.1 pathogenicity island 2 effector protein SseI 356573 1171376000322 STU288_01605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseI YP_007901426.1 355605 D 1171376 CDS YP_007901427.1 482902867 356841..357089 1 NC_021151.1 COG3436 Transposase and inactivated derivatives; transposase 357089 1171376000323 STU288_01610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007901427.1 356841 D 1171376 CDS YP_007901428.1 482902868 complement(357221..357847) 1 NC_021151.1 COG2135 Uncharacterized conserved protein; hypothetical protein 357847 1171376000324 STU288_01615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901428.1 357221 R 1171376 CDS YP_007901429.1 482902869 complement(358200..358886) 1 NC_021151.1 gifsy-2 prophage protein 358886 1171376000325 STU288_01620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-2 prophage protein YP_007901429.1 358200 R 1171376 CDS YP_007901430.1 482902870 complement(359157..359348) 1 NC_021151.1 Gifsy-2 prophage MsgA 359348 1171376000326 STU288_01625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-2 prophage MsgA YP_007901430.1 359157 R 1171376 CDS YP_007901431.1 482902871 359775..362387 1 NC_021151.1 COG0308 Aminopeptidase N; aminopeptidase N 362387 pepN 1171376000327 pepN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminopeptidase N YP_007901431.1 359775 D 1171376 CDS YP_007901432.1 482902872 362595..363605 1 NC_021151.1 COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 363605 1171376000328 STU288_01635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroorotate dehydrogenase 2 YP_007901432.1 362595 D 1171376 CDS YP_007901433.1 482902873 363771..364313 1 NC_021151.1 hypothetical protein 364313 1171376000329 STU288_01640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901433.1 363771 D 1171376 CDS YP_007901434.1 482902874 complement(364310..365419) 1 NC_021151.1 COG3217 Uncharacterized Fe-S protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 365419 1171376000330 STU288_01645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_007901434.1 364310 R 1171376 CDS YP_007901435.1 482902875 365518..367626 1 NC_021151.1 COG0116 Predicted N6-adenine-specific DNA methylase; 23S rRNA m(2)G2445 methyltransferase 367626 rlmL 1171376000331 rlmL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA m(2)G2445 methyltransferase YP_007901435.1 365518 D 1171376 CDS YP_007901436.1 482902876 367639..369546 1 NC_021151.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase component 369546 1171376000332 STU288_01655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATPase component YP_007901436.1 367639 D 1171376 CDS YP_007901437.1 482902877 369561..370814 1 NC_021151.1 COG2995 Uncharacterized paraquat-inducible protein A; paraquat-inducible membrane protein A 370814 1171376000333 STU288_01660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 paraquat-inducible membrane protein A YP_007901437.1 369561 D 1171376 CDS YP_007901438.1 482902878 370819..372459 1 NC_021151.1 COG3008 Paraquat-inducible protein B; paraquat-inducible protein B 372459 1171376000334 STU288_01665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 paraquat-inducible protein B YP_007901438.1 370819 D 1171376 CDS YP_007901439.1 482902879 372456..373019 1 NC_021151.1 COG3009 Uncharacterized protein conserved in bacteria; lipoprotein 373019 1171376000335 STU288_01670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901439.1 372456 D 1171376 CDS YP_007901440.1 482902880 373275..373442 1 NC_021151.1 COG3130 Ribosome modulation factor; ribosome modulation factor 373442 1171376000336 STU288_01675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome modulation factor YP_007901440.1 373275 D 1171376 CDS YP_007901441.1 482902881 complement(373542..374060) 1 NC_021151.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 374060 1171376000337 STU288_01680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_007901441.1 373542 R 1171376 CDS YP_007901442.1 482902882 complement(374129..375889) 1 NC_021151.1 COG1067 Predicted ATP-dependent protease; ATP-dependent protease La 375889 1171376000338 STU288_01685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent protease La YP_007901442.1 374129 R 1171376 CDS YP_007901443.1 482902883 376075..376527 1 NC_021151.1 COG3120 Uncharacterized protein conserved in bacteria; Ter macrodomain organizer matS-binding protein 376527 1171376000339 STU288_01690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Ter macrodomain organizer matS-binding protein YP_007901443.1 376075 D 1171376 CDS YP_007901444.1 482902884 complement(376599..377651) 1 NC_021151.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane protein A 377651 1171376000340 STU288_01695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein A YP_007901444.1 376599 R 1171376 CDS YP_007901445.1 482902885 complement(378008..378517) 1 NC_021151.1 COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation; SOS cell division inhibitor 378517 1171376000341 STU288_01700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SOS cell division inhibitor YP_007901445.1 378008 R 1171376 CDS YP_007901446.1 482902886 378734..379339 1 NC_021151.1 COG3070 Regulator of competence-specific genes; Protein sxy 379339 1171376000342 STU288_01705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein sxy YP_007901446.1 378734 D 1171376 CDS YP_007901447.1 482902887 complement(379326..381479) 1 NC_021151.1 COG1289 Predicted membrane protein; Putative efflux (PET) family inner membrane protein YccS 381479 1171376000343 STU288_01710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative efflux (PET) family inner membrane protein YccS YP_007901447.1 379326 R 1171376 CDS YP_007901448.1 482902888 complement(381498..381944) 1 NC_021151.1 COG3304 Predicted membrane protein; hypothetical protein 381944 1171376000344 STU288_01715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901448.1 381498 R 1171376 CDS YP_007901449.1 482902889 382068..384122 1 NC_021151.1 COG0210 Superfamily I DNA and RNA helicases; DNA helicase IV 384122 helD 1171376000345 helD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA helicase IV YP_007901449.1 382068 D 1171376 CDS YP_007901450.1 482902890 complement(384158..384616) 1 NC_021151.1 COG1803 Methylglyoxal synthase; methylglyoxal synthase 384616 mgsA 1171376000346 mgsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylglyoxal synthase YP_007901450.1 384158 R 1171376 CDS YP_007901451.1 482902891 complement(384711..385373) 1 NC_021151.1 COG3110 Uncharacterized protein conserved in bacteria; hypothetical protein 385373 1171376000347 STU288_01730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901451.1 384711 R 1171376 CDS YP_007901452.1 482902892 385547..385960 1 NC_021151.1 COG1832 Predicted CoA-binding protein; hypothetical protein 385960 1171376000348 STU288_01735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901452.1 385547 D 1171376 CDS YP_007901453.1 482902893 complement(386005..386322) 1 NC_021151.1 COG3785 Uncharacterized conserved protein; heat shock protein HspQ 386322 1171376000349 STU288_01740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein HspQ YP_007901453.1 386005 R 1171376 CDS YP_007901454.1 482902894 complement(386380..387591) 1 NC_021151.1 COG1092 Predicted SAM-dependent methyltransferases; 23S rRNA m(5)C1962 methyltransferase 387591 1171376000350 STU288_01745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA m(5)C1962 methyltransferase YP_007901454.1 386380 R 1171376 CDS YP_007901455.1 482902895 387806..388354 1 NC_021151.1 COG1881 Phospholipid-binding protein; putative outer membrane protein 388354 1171376000351 STU288_01750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007901455.1 387806 D 1171376 CDS YP_007901456.1 482902896 388380..389159 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator 389159 1171376000352 STU288_01755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007901456.1 388380 D 1171376 CDS YP_007901457.1 482902897 389208..389489 1 NC_021151.1 COG1254 Acylphosphatases; acylphosphatase 389489 1171376000353 STU288_01760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acylphosphatase YP_007901457.1 389208 D 1171376 CDS YP_007901458.1 482902898 complement(389486..389815) 1 NC_021151.1 COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit; sulfur transfer protein TusE 389815 1171376000354 STU288_01765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur transfer protein TusE YP_007901458.1 389486 R 1171376 CDS YP_007901459.1 482902899 complement(389902..390561) 1 NC_021151.1 COG0670 Integral membrane protein, interacts with FtsH; HflBKC-binding inner membrane protein 390561 1171376000355 STU288_01770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HflBKC-binding inner membrane protein YP_007901459.1 389902 R 1171376 CDS YP_007901460.1 482902900 complement(391182..391862) 1 NC_021151.1 pathogenicity island-encoded protein A 391862 1171376000357 STU288_01775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island-encoded protein A YP_007901460.1 391182 R 1171376 CDS YP_007901461.1 482902901 complement(392084..392959) 1 NC_021151.1 COG1357 Uncharacterized low-complexity proteins; secreted effector protein PipB 392959 1171376000358 STU288_01780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted effector protein PipB YP_007901461.1 392084 R 1171376 CDS YP_007901462.1 482902902 complement(393507..393848) 1 NC_021151.1 type III secretion chaperone protein SigE 393848 1171376000359 STU288_01785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion chaperone protein SigE YP_007901462.1 393507 R 1171376 CDS YP_007901463.1 482902903 complement(393865..395550) 1 NC_021151.1 inositol phosphate phosphatase SopB 395550 1171376000360 STU288_01790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inositol phosphate phosphatase SopB YP_007901463.1 393865 R 1171376 CDS YP_007901464.1 482902904 395882..396052 1 NC_021151.1 hypothetical protein 396052 1171376000361 STU288_01795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901464.1 395882 D 1171376 CDS YP_007901465.1 482902905 complement(396272..397741) 1 NC_021151.1 COG4690 Dipeptidase; pathogenicity island encoded protein: SPI3 397741 1171376000362 STU288_01800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island encoded protein: SPI3 YP_007901465.1 396272 R 1171376 CDS YP_007901466.1 482902906 complement(397914..399278) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; copper resistance protein 399278 1171376000363 STU288_01805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 copper resistance protein YP_007901466.1 397914 R 1171376 CDS YP_007901467.1 482902907 complement(399271..399951) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein YedW 399951 1171376000364 STU288_01810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulatory protein YedW YP_007901467.1 399271 R 1171376 CDS YP_007901468.1 482902908 400087..400497 1 NC_021151.1 COG2351 Transthyretin-like protein; hydroxyisourate hydrolase 400497 1171376000365 STU288_01815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxyisourate hydrolase YP_007901468.1 400087 D 1171376 CDS YP_007901469.1 482902909 complement(400834..401346) 1 NC_021151.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; 4-hydroxyphenylacetate 3-monooxygenase reductase subunit 401346 hpaC 1171376000366 hpaC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxyphenylacetate 3-monooxygenase reductase subunit YP_007901469.1 400834 R 1171376 CDS YP_007901470.1 482902910 complement(401364..402926) 1 NC_021151.1 COG2368 Aromatic ring hydroxylase; 4-hydroxyphenylacetate 3-monooxygenase 402926 1171376000367 STU288_01825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxyphenylacetate 3-monooxygenase YP_007901470.1 401364 R 1171376 CDS YP_007901471.1 482902911 complement(403144..403584) 1 NC_021151.1 COG1846 Transcriptional regulators; Homoprotocatechuate degradative operon repressor 403584 1171376000368 STU288_01830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Homoprotocatechuate degradative operon repressor YP_007901471.1 403144 R 1171376 CDS YP_007901472.1 482902912 403859..405148 1 NC_021151.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase 405148 1171376000369 STU288_01835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase YP_007901472.1 403859 D 1171376 CDS YP_007901473.1 482902913 405145..406611 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 406611 1171376000370 STU288_01840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_007901473.1 405145 D 1171376 CDS YP_007901474.1 482902914 406613..407464 1 NC_021151.1 COG3384 Uncharacterized conserved protein; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 407464 1171376000371 STU288_01845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_007901474.1 406613 D 1171376 CDS YP_007901475.1 482902915 407474..407854 1 NC_021151.1 COG3232 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 407854 1171376000372 STU288_01850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_007901475.1 407474 D 1171376 CDS YP_007901476.1 482902916 407997..408800 1 NC_021151.1 COG3971 2-keto-4-pentenoate hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 408800 1171376000373 STU288_01855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_007901476.1 407997 D 1171376 CDS YP_007901477.1 482902917 408811..409602 1 NC_021151.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 409602 1171376000374 STU288_01860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_007901477.1 408811 D 1171376 CDS YP_007901478.1 482902918 409674..411050 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; 4-hydroxyphenylacetate catabolism 411050 1171376000375 STU288_01865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxyphenylacetate catabolism YP_007901478.1 409674 D 1171376 CDS YP_007901479.1 482902919 411060..411956 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional activator rhaR L-rhamnose operon transcriptional activator rhaR 411956 1171376000376 STU288_01870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional activator rhaR L-rhamnose operon transcriptional activator rhaR YP_007901479.1 411060 D 1171376 CDS YP_007901480.1 482902920 411970..412908 1 NC_021151.1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; hypothetical protein 412908 1171376000377 STU288_01875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901480.1 411970 D 1171376 CDS YP_007901481.1 482902921 complement(413316..413678) 1 NC_021151.1 anti-adapter protein IraM 413678 1171376000378 STU288_01880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-adapter protein IraM YP_007901481.1 413316 R 1171376 CDS YP_007901482.1 482902922 414126..414281 1 NC_021151.1 hypothetical protein 414281 1171376000379 STU288_01885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901482.1 414126 D 1171376 CDS YP_007901483.1 482902923 complement(414332..414637) 1 NC_021151.1 chaperone-modulator protein CbpM 414637 1171376000380 STU288_01890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone-modulator protein CbpM YP_007901483.1 414332 R 1171376 CDS YP_007901484.1 482902924 complement(414637..415557) 1 NC_021151.1 COG2214 DnaJ-class molecular chaperone; curved DNA-binding protein CbpA 415557 1171376000381 STU288_01895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curved DNA-binding protein CbpA YP_007901484.1 414637 R 1171376 CDS YP_007901485.1 482902925 415792..416154 1 NC_021151.1 membrane protein suppressor for copper-sensitivity A 416154 1171376000382 STU288_01900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane protein suppressor for copper-sensitivity A YP_007901485.1 415792 D 1171376 CDS YP_007901486.1 482902926 416203..418089 1 NC_021151.1 COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis; membrane protein, suppressor for copper-sensitivity B precursor 418089 1171376000383 STU288_01905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane protein, suppressor for copper-sensitivity B precursor YP_007901486.1 416203 D 1171376 CDS YP_007901487.1 482902927 418086..418709 1 NC_021151.1 COG1651 Protein-disulfide isomerase; secreted protein, suppressor for copper-sensitivity C precursor 418709 1171376000384 STU288_01910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted protein, suppressor for copper-sensitivity C precursor YP_007901487.1 418086 D 1171376 CDS YP_007901488.1 482902928 418699..419205 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; TlpA-like family, suppressor for copper sensitivity D protein (ScsD) 419205 1171376000385 STU288_01915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TlpA-like family, suppressor for copper sensitivity D protein (ScsD) YP_007901488.1 418699 D 1171376 CDS YP_007901489.1 482902929 419338..420579 1 NC_021151.1 glucose-1-phosphatase/inositol phosphatase 420579 1171376000386 STU288_01920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-1-phosphatase/inositol phosphatase YP_007901489.1 419338 D 1171376 CDS YP_007901490.1 482902930 complement(420613..420840) 1 NC_021151.1 hypothetical protein 420840 1171376000387 STU288_01925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901490.1 420613 R 1171376 CDS YP_007901491.1 482902931 complement(420861..421457) 1 NC_021151.1 COG0655 Multimeric flavodoxin WrbA; NAD(P)H:quinone oxidoreductase 421457 1171376000388 STU288_01930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD(P)H:quinone oxidoreductase YP_007901491.1 420861 R 1171376 CDS YP_007901492.1 482902932 422146..422784 1 NC_021151.1 COG1309 Transcriptional regulator; HTH-type transcriptional regulator RutR 422784 1171376000389 STU288_01935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional regulator RutR YP_007901492.1 422146 D 1171376 CDS YP_007901493.1 482902933 complement(422781..423176) 1 NC_021151.1 COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein 423176 1171376000390 STU288_01940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901493.1 422781 R 1171376 CDS YP_007901494.1 482902934 complement(423235..427197) 1 NC_021151.1 COG0506 Proline dehydrogenase; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 427197 putA 1171376000391 putA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_007901494.1 423235 R 1171376 CDS YP_007901495.1 482902935 427619..429127 1 NC_021151.1 COG0591 Na+/proline symporter; proline:sodium symporter PutP 429127 1171376000392 STU288_01950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 proline:sodium symporter PutP YP_007901495.1 427619 D 1171376 CDS YP_007901496.1 482902936 429745..430041 1 NC_021151.1 hypothetical protein 430041 1171376000393 STU288_01955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901496.1 429745 D 1171376 CDS YP_007901497.1 482902937 430020..430808 1 NC_021151.1 COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; hypothetical protein 430808 1171376000394 STU288_01960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901497.1 430020 D 1171376 CDS YP_007901498.1 482902938 complement(430914..431795) 1 NC_021151.1 COG1737 Transcriptional regulators; transcriptional regulator 431795 1171376000395 STU288_01965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007901498.1 430914 R 1171376 CDS YP_007901499.1 482902939 complement(432080..433576) 1 NC_021151.1 COG0591 Na+/proline symporter; putative sodium/glucose cotransporter 433576 1171376000396 STU288_01970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sodium/glucose cotransporter YP_007901499.1 432080 R 1171376 CDS YP_007901500.1 482902940 complement(433913..434593) 1 NC_021151.1 COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase 434593 1171376000397 STU288_01975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmannosamine-6-phosphate 2-epimerase YP_007901500.1 433913 R 1171376 CDS YP_007901501.1 482902941 435099..436259 1 NC_021151.1 COG3055 Uncharacterized protein conserved in bacteria; N-acetylneuraminic acid mutarotase 436259 1171376000398 STU288_01980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylneuraminic acid mutarotase YP_007901501.1 435099 D 1171376 CDS YP_007901502.1 482902942 436305..436997 1 NC_021151.1 Porin ompL Flags: Precursor 436997 1171376000399 STU288_01985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Porin ompL Flags: Precursor YP_007901502.1 436305 D 1171376 CDS YP_007901503.1 482902943 437280..438560 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; sialic acid transporter 438560 1171376000400 STU288_01990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sialic acid transporter YP_007901503.1 437280 D 1171376 CDS YP_007901504.1 482902944 438574..439677 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; putative dehydrogenase 439677 1171376000401 STU288_01995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative dehydrogenase YP_007901504.1 438574 D 1171376 CDS YP_007901505.1 482902945 complement(440175..440339) 1 NC_021151.1 hypothetical protein 440339 1171376000403 STU288_02000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901505.1 440175 R 1171376 CDS YP_007901506.1 482902946 440338..441276 1 NC_021151.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; bifunctional glyoxylate/hydroxypyruvate reductase A 441276 ghrA 1171376000404 ghrA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glyoxylate/hydroxypyruvate reductase A YP_007901506.1 440338 D 1171376 CDS YP_007901507.1 482902947 441360..442097 1 NC_021151.1 COG1387 Histidinol phosphatase and related hydrolases of the PHP family; hydrolase 442097 1171376000405 STU288_02010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007901507.1 441360 D 1171376 CDS YP_007901508.1 482902948 442121..442675 1 NC_021151.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein 442675 1171376000406 STU288_02015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901508.1 442121 D 1171376 CDS YP_007901509.1 482902949 442776..443258 1 NC_021151.1 inner membrane protein 443258 1171376000407 STU288_02020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007901509.1 442776 D 1171376 CDS YP_007901510.1 482902950 complement(443297..444130) 1 NC_021151.1 COG1462 Uncharacterized protein involved in formation of curli polymers; curli production assembly/transport protein CsgG 444130 1171376000408 STU288_02025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curli production assembly/transport protein CsgG YP_007901510.1 443297 R 1171376 CDS YP_007901511.1 482902951 complement(444157..444573) 1 NC_021151.1 curli assembly protein CsgF 444573 1171376000409 STU288_02030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curli assembly protein CsgF YP_007901511.1 444157 R 1171376 CDS YP_007901512.1 482902952 complement(444600..444995) 1 NC_021151.1 COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; curli assembly protein CsgE 444995 1171376000410 STU288_02035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curli assembly protein CsgE YP_007901512.1 444600 R 1171376 CDS YP_007901513.1 482902953 complement(445000..445650) 1 NC_021151.1 COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional regulator CsgD 445650 1171376000411 STU288_02040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator CsgD YP_007901513.1 445000 R 1171376 CDS YP_007901514.1 482902954 446405..446860 1 NC_021151.1 curlin minor subunit CsgB 446860 csgB 1171376000412 csgB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curlin minor subunit CsgB YP_007901514.1 446405 D 1171376 CDS YP_007901515.1 482902955 446902..447357 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; major curlin subunit 447357 csgA 1171376000413 csgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major curlin subunit YP_007901515.1 446902 D 1171376 CDS YP_007901516.1 482902956 447320..447745 1 NC_021151.1 curli assembly protein CsgC 447745 csgC 1171376000414 csgC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 curli assembly protein CsgC YP_007901516.1 447320 D 1171376 CDS YP_007901517.1 482902957 447876..448196 1 NC_021151.1 hypothetical protein 448196 1171376000415 STU288_02060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901517.1 447876 D 1171376 CDS YP_007901518.1 482902958 448285..448824 1 NC_021151.1 COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; RNase III inhibitor 448824 1171376000416 STU288_02065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNase III inhibitor YP_007901518.1 448285 D 1171376 CDS YP_007901519.1 482902959 448760..450247 1 NC_021151.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; putative phospholipase 450247 1171376000417 STU288_02070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phospholipase YP_007901519.1 448760 D 1171376 CDS YP_007901520.1 482902960 complement(450264..451418) 1 NC_021151.1 glucans biosynthesis protein 451418 opgC 1171376000418 opgC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucans biosynthesis protein YP_007901520.1 450264 R 1171376 CDS YP_007901521.1 482902961 451690..453225 1 NC_021151.1 COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein G 453225 mdoG 1171376000419 mdoG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucan biosynthesis protein G YP_007901521.1 451690 D 1171376 CDS YP_007901522.1 482902962 453218..455761 1 NC_021151.1 COG2943 Membrane glycosyltransferase; glucosyltransferase MdoH 455761 1171376000420 STU288_02085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucosyltransferase MdoH YP_007901522.1 453218 D 1171376 CDS YP_007901523.1 482902963 455835..456062 1 NC_021151.1 COG5645 Predicted periplasmic lipoprotein; lipoprotein 456062 1171376000421 STU288_02090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901523.1 455835 D 1171376 CDS YP_007901524.1 482902964 complement(456063..456437) 1 NC_021151.1 secY/secA suppressor protein 456437 1171376000422 STU288_02095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secY/secA suppressor protein YP_007901524.1 456063 R 1171376 CDS YP_007901525.1 482902965 complement(456519..457733) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; drug efflux system protein MdtG 457733 1171376000423 STU288_02100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 drug efflux system protein MdtG YP_007901525.1 456519 R 1171376 CDS YP_007901526.1 482902966 complement(457888..458808) 1 NC_021151.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 458808 1171376000424 STU288_02105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid A biosynthesis lauroyl acyltransferase YP_007901526.1 457888 R 1171376 CDS YP_007901527.1 482902967 459028..460080 1 NC_021151.1 COG1054 Predicted sulfurtransferase; rhodanese-related sulfurtransferase 460080 1171376000425 STU288_02110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rhodanese-related sulfurtransferase YP_007901527.1 459028 D 1171376 CDS YP_007901528.1 482902968 complement(460132..460707) 1 NC_021151.1 COG2353 Uncharacterized conserved protein; hypothetical protein 460707 1171376000426 STU288_02115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901528.1 460132 R 1171376 CDS YP_007901529.1 482902969 complement(460704..461276) 1 NC_021151.1 COG3038 Cytochrome B561; cytochrome b561 461276 1171376000427 STU288_02120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome b561 YP_007901529.1 460704 R 1171376 CDS YP_007901530.1 482902970 complement(461539..461652) 1 NC_021151.1 hypothetical protein 461652 1171376000428 STU288_02125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901530.1 461539 R 1171376 CDS YP_007901531.1 482902971 complement(461693..462811) 1 NC_021151.1 COG0665 Glycine/D-amino acid oxidases (deaminating); N-methyltryptophan oxidase 462811 solA 1171376000429 solA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-methyltryptophan oxidase YP_007901531.1 461693 R 1171376 CDS YP_007901532.1 482902972 complement(462924..463178) 1 NC_021151.1 biofilm formation regulatory protein BssS 463178 bssS 1171376000430 bssS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biofilm formation regulatory protein BssS YP_007901532.1 462924 R 1171376 CDS YP_007901533.1 482902973 complement(463468..463713) 1 NC_021151.1 DNA damage-inducible protein I 463713 1171376000431 STU288_02140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA damage-inducible protein I YP_007901533.1 463468 R 1171376 CDS YP_007901534.1 482902974 complement(463787..464833) 1 NC_021151.1 COG0418 Dihydroorotase; dihydroorotase 464833 1171376000432 STU288_02145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroorotase YP_007901534.1 463787 R 1171376 CDS YP_007901535.1 482902975 complement(464938..465498) 1 NC_021151.1 lipoprotein 465498 1171376000433 STU288_02150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901535.1 464938 R 1171376 CDS YP_007901536.1 482902976 complement(465623..466270) 1 NC_021151.1 COG2999 Glutaredoxin 2; glutaredoxin 2 466270 1171376000434 STU288_02155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaredoxin 2 YP_007901536.1 465623 R 1171376 CDS YP_007901537.1 482902977 complement(466334..467542) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein MdtH 467542 1171376000435 STU288_02160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug resistance protein MdtH YP_007901537.1 466334 R 1171376 CDS YP_007901538.1 482902978 467779..468363 1 NC_021151.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-S5-alanine N-acetyltransferase 468363 1171376000436 STU288_02165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal-protein-S5-alanine N-acetyltransferase YP_007901538.1 467779 D 1171376 CDS YP_007901539.1 482902979 468399..469046 1 NC_021151.1 COG3132 Uncharacterized protein conserved in bacteria; hypothetical protein 469046 1171376000437 STU288_02170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901539.1 468399 D 1171376 CDS YP_007901540.1 482902980 469048..469971 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; putative virulence protein 469971 1171376000438 STU288_02175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative virulence protein YP_007901540.1 469048 D 1171376 CDS YP_007901541.1 482902981 470275..471810 1 NC_021151.1 COG0728 Uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 471810 1171376000439 STU288_02180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integral membrane protein MviN YP_007901541.1 470275 D 1171376 CDS YP_007901542.1 482902982 complement(471892..472314) 1 NC_021151.1 flagella synthesis chaperone protein FlgN 472314 1171376000440 STU288_02185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagella synthesis chaperone protein FlgN YP_007901542.1 471892 R 1171376 CDS YP_007901543.1 482902983 complement(472319..472612) 1 NC_021151.1 COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); anti-sigma28 factor FlgM 472612 1171376000441 STU288_02190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-sigma28 factor FlgM YP_007901543.1 472319 R 1171376 CDS YP_007901544.1 482902984 complement(472704..473363) 1 NC_021151.1 COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA 473363 flgA 1171376000442 flgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body P-ring biosynthesis protein FlgA YP_007901544.1 472704 R 1171376 CDS YP_007901545.1 482902985 473520..473936 1 NC_021151.1 COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 473936 flgB 1171376000443 flgB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body rod protein FlgB YP_007901545.1 473520 D 1171376 CDS YP_007901546.1 482902986 473940..474344 1 NC_021151.1 COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 474344 flgC 1171376000444 flgC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body rod protein FlgC YP_007901546.1 473940 D 1171376 CDS YP_007901547.1 482902987 474356..475054 1 NC_021151.1 COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 475054 flgD 1171376000445 flgD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body rod modification protein YP_007901547.1 474356 D 1171376 CDS YP_007901548.1 482902988 475081..476292 1 NC_021151.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 476292 flgE 1171376000446 flgE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar hook protein FlgE YP_007901548.1 475081 D 1171376 CDS YP_007901549.1 482902989 476313..477068 1 NC_021151.1 COG4787 Flagellar basal body rod protein; flagellar basal body rod protein FlgF 477068 flgF 1171376000447 flgF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body rod protein FlgF YP_007901549.1 476313 D 1171376 CDS YP_007901550.1 482902990 477082..477864 1 NC_021151.1 COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 477864 flgG 1171376000448 flgG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body rod protein FlgG YP_007901550.1 477082 D 1171376 CDS YP_007901551.1 482902991 477919..478617 1 NC_021151.1 COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 478617 flgH 1171376000449 flgH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body L-ring protein YP_007901551.1 477919 D 1171376 CDS YP_007901552.1 482902992 478629..479726 1 NC_021151.1 COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein 479726 flgI 1171376000450 flgI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body P-ring protein YP_007901552.1 478629 D 1171376 CDS YP_007901553.1 482902993 479726..480676 1 NC_021151.1 COG3951 Rod binding protein; flagellar rod assembly protein/muramidase FlgJ 480676 flgJ 1171376000451 flgJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar rod assembly protein/muramidase FlgJ YP_007901553.1 479726 D 1171376 CDS YP_007901554.1 482902994 480741..482402 1 NC_021151.1 COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 482402 flgK 1171376000452 flgK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar hook-associated protein FlgK YP_007901554.1 480741 D 1171376 CDS YP_007901555.1 482902995 482417..483370 1 NC_021151.1 COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 483370 flgL 1171376000453 flgL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar hook-associated protein FlgL YP_007901555.1 482417 D 1171376 CDS YP_007901556.1 482902996 complement(483627..486830) 1 NC_021151.1 COG1530 Ribonucleases G and E; ribonuclease E 486830 rne 1171376000454 rne Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease E YP_007901556.1 483627 R 1171376 CDS YP_007901557.1 482902997 487404..488363 1 NC_021151.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridylate synthase C 488363 1171376000455 STU288_02260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA pseudouridylate synthase C YP_007901557.1 487404 D 1171376 CDS YP_007901558.1 482902998 488501..489262 1 NC_021151.1 putative inner membrane lipoprotein 489262 1171376000456 STU288_02265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane lipoprotein YP_007901558.1 488501 D 1171376 CDS YP_007901559.1 482902999 489468..489692 1 NC_021151.1 hypothetical protein 489692 1171376000457 STU288_02270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901559.1 489468 D 1171376 CDS YP_007901560.1 482903000 complement(489764..490348) 1 NC_021151.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 490348 1171376000458 STU288_02275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Maf-like protein YP_007901560.1 489764 R 1171376 CDS YP_007901561.1 482903001 490546..491067 1 NC_021151.1 COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 491067 1171376000459 STU288_02280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901561.1 490546 D 1171376 CDS YP_007901562.1 482903002 491119..491292 1 NC_021151.1 COG0333 Ribosomal protein L32; 50S ribosomal protein L32 491292 1171376000460 STU288_02285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L32 YP_007901562.1 491119 D 1171376 CDS YP_007901563.1 482903003 491426..492505 1 NC_021151.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme; phosphate acyltransferase 492505 1171376000461 STU288_02290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate acyltransferase YP_007901563.1 491426 D 1171376 CDS YP_007901564.1 482903004 492585..493538 1 NC_021151.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 493538 1171376000462 STU288_02295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-oxoacyl-(acyl carrier protein) synthase III YP_007901564.1 492585 D 1171376 CDS YP_007901565.1 482903005 493554..494483 1 NC_021151.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 494483 1171376000463 STU288_02300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 malonyl CoA-acyl carrier protein transacylase YP_007901565.1 493554 D 1171376 CDS YP_007901566.1 482903006 494496..495230 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase 495230 fabG 1171376000464 fabG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-ketoacyl-(acyl-carrier-protein) reductase YP_007901566.1 494496 D 1171376 CDS YP_007901567.1 482903007 495386..495622 1 NC_021151.1 COG0236 Acyl carrier protein; hypothetical protein 495622 1171376000465 STU288_02310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901567.1 495386 D 1171376 CDS YP_007901568.1 482903008 495708..496949 1 NC_021151.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 496949 1171376000466 STU288_02315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-oxoacyl-(acyl carrier protein) synthase II YP_007901568.1 495708 D 1171376 CDS YP_007901569.1 482903009 497073..497882 1 NC_021151.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 497882 1171376000467 STU288_02320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-amino-4-deoxychorismate lyase YP_007901569.1 497073 D 1171376 CDS YP_007901570.1 482903010 497885..498907 1 NC_021151.1 COG1559 Predicted periplasmic solute-binding protein; aminodeoxychorismate lyase 498907 1171376000468 STU288_02325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminodeoxychorismate lyase YP_007901570.1 497885 D 1171376 CDS YP_007901571.1 482903011 498897..499538 1 NC_021151.1 COG0125 Thymidylate kinase; thymidylate kinase 499538 tmk 1171376000469 tmk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thymidylate kinase YP_007901571.1 498897 D 1171376 CDS YP_007901572.1 482903012 499535..500539 1 NC_021151.1 COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 500539 1171376000470 STU288_02335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit delta' YP_007901572.1 499535 D 1171376 CDS YP_007901573.1 482903013 500550..501347 1 NC_021151.1 COG0084 Mg-dependent DNase; DNAse 501347 1171376000471 STU288_02340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNAse YP_007901573.1 500550 D 1171376 CDS YP_007901574.1 482903014 501642..503075 1 NC_021151.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS glucose-specific subunit IIBC 503075 1171376000472 STU288_02345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS glucose-specific subunit IIBC YP_007901574.1 501642 D 1171376 CDS YP_007901575.1 482903015 complement(503160..505334) 1 NC_021151.1 COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; ferric-rhodotorulic acid outer membrane transporter 505334 1171376000473 STU288_02350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferric-rhodotorulic acid outer membrane transporter YP_007901575.1 503160 R 1171376 CDS YP_007901576.1 482903016 505676..506035 1 NC_021151.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; purine nucleoside phosphoramidase 506035 1171376000474 STU288_02355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 purine nucleoside phosphoramidase YP_007901576.1 505676 D 1171376 CDS YP_007901577.1 482903017 506038..506412 1 NC_021151.1 COG5633 Predicted periplasmic lipoprotein; lipoprotein 506412 1171376000475 STU288_02360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901577.1 506038 D 1171376 CDS YP_007901578.1 482903018 506426..507064 1 NC_021151.1 COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family); Lipoprotein YcfM 507064 1171376000476 STU288_02365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Lipoprotein YcfM YP_007901578.1 506426 D 1171376 CDS YP_007901579.1 482903019 507045..507869 1 NC_021151.1 COG0510 Predicted choline kinase involved in LPS biosynthesis; thiamine kinase 507869 thiK 1171376000477 thiK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine kinase YP_007901579.1 507045 D 1171376 CDS YP_007901580.1 482903020 507880..508905 1 NC_021151.1 COG1472 Beta-glucosidase-related glycosidases; beta-hexosaminidase 508905 1171376000478 STU288_02375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 beta-hexosaminidase YP_007901580.1 507880 D 1171376 CDS YP_007901581.1 482903021 508930..509472 1 NC_021151.1 COG3150 Predicted esterase; hypothetical protein 509472 1171376000479 STU288_02380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901581.1 508930 D 1171376 CDS YP_007901582.1 482903022 509727..511031 1 NC_021151.1 COG1252 NADH dehydrogenase, FAD-containing subunit; respiratory NADH dehydrogenase 2 511031 1171376000480 STU288_02385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 respiratory NADH dehydrogenase 2 YP_007901582.1 509727 D 1171376 CDS YP_007901583.1 482903023 complement(511044..511130) 1 NC_021151.1 hypothetical protein 511130 1171376000481 STU288_02390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901583.1 511044 R 1171376 CDS YP_007901584.1 482903024 511210..511749 1 NC_021151.1 COG3134 Predicted outer membrane lipoprotein; hypothetical protein 511749 1171376000482 STU288_02395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901584.1 511210 D 1171376 CDS YP_007901585.1 482903025 complement(511824..512459) 1 NC_021151.1 COG1309 Transcriptional regulator; putative transcriptional repressor 512459 1171376000483 STU288_02400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional repressor YP_007901585.1 511824 R 1171376 CDS YP_007901586.1 482903026 512701..512958 1 NC_021151.1 hypothetical protein 512958 1171376000484 STU288_02405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901586.1 512701 D 1171376 CDS YP_007901587.1 482903027 complement(513055..514020) 1 NC_021151.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 514020 1171376000485 STU288_02410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L,D-transpeptidase YP_007901587.1 513055 R 1171376 CDS YP_007901588.1 482903028 complement(514168..517614) 1 NC_021151.1 COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 517614 1171376000486 STU288_02415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription-repair coupling factor YP_007901588.1 514168 R 1171376 CDS YP_007901589.1 482903029 517952..519151 1 NC_021151.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolC 519151 1171376000487 STU288_02420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane-specific lipoprotein transporter subunit LolC YP_007901589.1 517952 D 1171376 CDS YP_007901590.1 482903030 519144..519845 1 NC_021151.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein transporter ATP-binding subunit 519845 lolD 1171376000488 lolD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein transporter ATP-binding subunit YP_007901590.1 519144 D 1171376 CDS YP_007901591.1 482903031 519845..521089 1 NC_021151.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolE 521089 1171376000489 STU288_02430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane-specific lipoprotein transporter subunit LolE YP_007901591.1 519845 D 1171376 CDS YP_007901592.1 482903032 521118..522029 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; N-acetyl-D-glucosamine kinase 522029 1171376000490 STU288_02435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetyl-D-glucosamine kinase YP_007901592.1 521118 D 1171376 CDS YP_007901593.1 482903033 522048..522869 1 NC_021151.1 COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 522869 1171376000491 STU288_02440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD-dependent deacetylase YP_007901593.1 522048 D 1171376 CDS YP_007901594.1 482903034 complement(522951..523997) 1 NC_021151.1 COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine ABC transporter periplasmic substrate-binding protein 523997 potD 1171376000492 potD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 spermidine/putrescine ABC transporter periplasmic substrate-binding protein YP_007901594.1 522951 R 1171376 CDS YP_007901595.1 482903035 complement(524022..524801) 1 NC_021151.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter membrane protein 524801 potC 1171376000493 potC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 spermidine/putrescine ABC transporter membrane protein YP_007901595.1 524022 R 1171376 CDS YP_007901596.1 482903036 complement(525117..526127) 1 NC_021151.1 secreted effector protein SifA 526127 sifA 1171376000494 sifA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted effector protein SifA YP_007901596.1 525117 R 1171376 CDS YP_007901597.1 482903037 complement(526456..527319) 1 NC_021151.1 COG1176 ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter membrane protein 527319 potB 1171376000495 potB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 spermidine/putrescine ABC transporter membrane protein YP_007901597.1 526456 R 1171376 CDS YP_007901598.1 482903038 complement(527303..528439) 1 NC_021151.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine/spermidine ABC transporter ATPase protein 528439 potA 1171376000496 potA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine/spermidine ABC transporter ATPase protein YP_007901598.1 527303 R 1171376 CDS YP_007901599.1 482903039 528690..529919 1 NC_021151.1 COG2195 Di- and tripeptidases; peptidase T 529919 1171376000497 STU288_02470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidase T YP_007901599.1 528690 D 1171376 CDS YP_007901600.1 482903040 529923..531257 1 NC_021151.1 COG0457 FOG: TPR repeat; hypothetical protein 531257 1171376000498 STU288_02475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901600.1 529923 D 1171376 CDS YP_007901601.1 482903041 complement(531297..532418) 1 NC_021151.1 COG2850 Uncharacterized conserved protein; hypothetical protein 532418 1171376000499 STU288_02480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901601.1 531297 R 1171376 CDS YP_007901602.1 482903042 complement(532499..533962) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensor protein PhoQ 533962 1171376000500 STU288_02485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein PhoQ YP_007901602.1 532499 R 1171376 CDS YP_007901603.1 482903043 complement(533962..534633) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator PhoP 534633 1171376000501 STU288_02490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator PhoP YP_007901603.1 533962 R 1171376 CDS YP_007901604.1 482903044 complement(534760..536130) 1 NC_021151.1 COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 536130 1171376000502 STU288_02495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylosuccinate lyase YP_007901604.1 534760 R 1171376 CDS YP_007901605.1 482903045 complement(536134..536775) 1 NC_021151.1 COG2915 Uncharacterized protein involved in purine metabolism; lysogenization regulator 536775 1171376000503 STU288_02500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysogenization regulator YP_007901605.1 536134 R 1171376 CDS YP_007901606.1 482903046 complement(536862..537968) 1 NC_021151.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA 537968 mnmA 1171376000504 mnmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA-specific 2-thiouridylase MnmA YP_007901606.1 536862 R 1171376 CDS YP_007901607.1 482903047 complement(538022..538483) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; mutT family protein 538483 1171376000505 STU288_02510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mutT family protein YP_007901607.1 538022 R 1171376 CDS YP_007901608.1 482903048 complement(538495..538824) 1 NC_021151.1 COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein; hypothetical protein 538824 1171376000506 STU288_02515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901608.1 538495 R 1171376 CDS YP_007901609.1 482903049 complement(538821..539486) 1 NC_021151.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase E 539486 1171376000507 STU288_02520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal large subunit pseudouridine synthase E YP_007901609.1 538821 R 1171376 CDS YP_007901610.1 482903050 539658..540908 1 NC_021151.1 COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 540908 1171376000508 STU288_02525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isocitrate dehydrogenase YP_007901610.1 539658 D 1171376 CDS YP_007901611.1 482903051 541356..542480 1 NC_021151.1 bacteriophage protein 542480 1171376000509 STU288_02530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007901611.1 541356 D 1171376 CDS YP_007901612.1 482903052 complement(542937..543140) 1 NC_021151.1 hypothetical protein 543140 1171376000510 STU288_02535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901612.1 542937 R 1171376 CDS YP_007901613.1 482903053 complement(543462..544250) 1 NC_021151.1 putative envelope lipoprotein 544250 1171376000511 STU288_02540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative envelope lipoprotein YP_007901613.1 543462 R 1171376 CDS YP_007901614.1 482903054 complement(544739..544978) 1 NC_021151.1 virulence protein (MsgA) 544978 1171376000512 STU288_02545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 virulence protein (MsgA) YP_007901614.1 544739 R 1171376 CDS YP_007901615.1 482903055 complement(545169..545690) 1 NC_021151.1 putative envelope protein 545690 1171376000513 STU288_02550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative envelope protein YP_007901615.1 545169 R 1171376 CDS YP_007901616.1 482903056 complement(546105..546317) 1 NC_021151.1 COG1278 Cold shock proteins; cold shock-like protein CspF 546317 1171376000514 STU288_02555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cold shock-like protein CspF YP_007901616.1 546105 R 1171376 CDS YP_007901617.1 482903057 547524..548081 1 NC_021151.1 COG3637 Opacity protein and related surface antigens; Attachment invasion locus protein precursor 548081 1171376000515 STU288_02560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Attachment invasion locus protein precursor YP_007901617.1 547524 D 1171376 CDS YP_007901618.1 482903058 complement(549318..549662) 1 NC_021151.1 lysozyme inhibitor 549662 1171376000517 STU288_02565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysozyme inhibitor YP_007901618.1 549318 R 1171376 CDS YP_007901619.1 482903059 550040..550165 1 NC_021151.1 putative lipoprotein 550165 1171376000518 STU288_02570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein YP_007901619.1 550040 D 1171376 CDS YP_007901620.1 482903060 550365..550637 1 NC_021151.1 putative cytoplasmic protein 550637 1171376000519 STU288_02575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901620.1 550365 D 1171376 CDS YP_007901621.1 482903061 550786..551256 1 NC_021151.1 COG0071 Molecular chaperone (small heat shock protein); heat shock protein 551256 1171376000520 STU288_02580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein YP_007901621.1 550786 D 1171376 CDS YP_007901622.1 482903062 551595..552638 1 NC_021151.1 COG4692 Predicted neuraminidase (sialidase); hypothetical protein 552638 1171376000521 STU288_02585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901622.1 551595 D 1171376 CDS YP_007901623.1 482903063 complement(552721..553251) 1 NC_021151.1 COG3038 Cytochrome B561; putative inner membrane protein 553251 1171376000522 STU288_02590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007901623.1 552721 R 1171376 CDS YP_007901624.1 482903064 complement(553400..553714) 1 NC_021151.1 Protein trl tRNA-associated locus protein 553714 1171376000523 STU288_02595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein trl tRNA-associated locus protein YP_007901624.1 553400 R 1171376 CDS YP_007901625.1 482903065 554396..556030 1 NC_021151.1 COG0747 ABC-type dipeptide transport system, periplasmic component; nickel ABC transporter substrate-binding protein 556030 1171376000524 STU288_02600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nickel ABC transporter substrate-binding protein YP_007901625.1 554396 D 1171376 CDS YP_007901626.1 482903066 556030..557004 1 NC_021151.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Dipeptide transport system permease protein dppB 557004 1171376000525 STU288_02605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Dipeptide transport system permease protein dppB YP_007901626.1 556030 D 1171376 CDS YP_007901627.1 482903067 556994..557806 1 NC_021151.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; putative inner membrane transport protein 557806 1171376000526 STU288_02610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane transport protein YP_007901627.1 556994 D 1171376 CDS YP_007901628.1 482903068 557800..558597 1 NC_021151.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; ABC transporter ATP-binding protein 558597 1171376000527 STU288_02615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007901628.1 557800 D 1171376 CDS YP_007901629.1 482903069 558591..559181 1 NC_021151.1 COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC transporter ATP-binding protein 559181 1171376000528 STU288_02620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007901629.1 558591 D 1171376 CDS YP_007901630.1 482903070 complement(559263..560396) 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; putative mscS family protein 560396 1171376000529 STU288_02625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative mscS family protein YP_007901630.1 559263 R 1171376 CDS YP_007901631.1 482903071 560590..560916 1 NC_021151.1 COG1145 Ferredoxin; ferredoxin 560916 1171376000530 STU288_02630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferredoxin YP_007901631.1 560590 D 1171376 CDS YP_007901632.1 482903072 561110..561760 1 NC_021151.1 COG3443 Predicted periplasmic or secreted protein; zinc/cadmium-binding protein 561760 1171376000532 STU288_02635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc/cadmium-binding protein YP_007901632.1 561110 D 1171376 CDS YP_007901633.1 482903073 561869..562657 1 NC_021151.1 COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 562657 1171376000533 STU288_02640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoglycoside resistance protein YP_007901633.1 561869 D 1171376 CDS YP_007901634.1 482903074 562802..563395 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative response regulator 563395 1171376000534 STU288_02645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative response regulator YP_007901634.1 562802 D 1171376 CDS YP_007901635.1 482903075 563464..564312 1 NC_021151.1 COG0789 Predicted transcriptional regulators; HTH-type transcriptional regulator mlrA MerR-like regulator A 564312 1171376000535 STU288_02650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional regulator mlrA MerR-like regulator A YP_007901635.1 563464 D 1171376 CDS YP_007901636.1 482903076 complement(564567..564815) 1 NC_021151.1 hypothetical protein 564815 1171376000536 STU288_02655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901636.1 564567 R 1171376 CDS YP_007901637.1 482903077 complement(564894..565043) 1 NC_021151.1 hypothetical protein 565043 1171376000537 STU288_02660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901637.1 564894 R 1171376 CDS YP_007901638.1 482903078 565126..565671 1 NC_021151.1 COG1605 Chorismate mutase; chorismate mutase 565671 1171376000538 STU288_02665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chorismate mutase YP_007901638.1 565126 D 1171376 CDS YP_007901639.1 482903079 565868..566506 1 NC_021151.1 COG1280 Putative threonine efflux protein; leucine export protein LeuE 566506 1171376000539 STU288_02670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine export protein LeuE YP_007901639.1 565868 D 1171376 CDS YP_007901640.1 482903080 566679..567041 1 NC_021151.1 COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; putative cytoplasmic protein 567041 1171376000540 STU288_02675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901640.1 566679 D 1171376 CDS YP_007901641.1 482903081 567044..567226 1 NC_021151.1 Protein yoaG 567226 1171376000541 STU288_02680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein yoaG YP_007901641.1 567044 D 1171376 CDS YP_007901642.1 482903082 567456..568097 1 NC_021151.1 putative nitric oxide reductase 568097 1171376000542 STU288_02685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative nitric oxide reductase YP_007901642.1 567456 D 1171376 CDS YP_007901643.1 482903083 568412..568660 1 NC_021151.1 COG2261 Predicted membrane protein; hypothetical protein 568660 1171376000543 STU288_02690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901643.1 568412 D 1171376 CDS YP_007901644.1 482903084 569093..569344 1 NC_021151.1 COG3042 Putative hemolysin; hemolysin 569344 1171376000544 STU288_02695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hemolysin YP_007901644.1 569093 D 1171376 CDS YP_007901645.1 482903085 569413..569724 1 NC_021151.1 hypothetical protein 569724 1171376000545 STU288_02700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901645.1 569413 D 1171376 CDS YP_007901646.1 482903086 complement(569710..570057) 1 NC_021151.1 COG3189 Uncharacterized conserved protein; hypothetical protein 570057 1171376000546 STU288_02705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901646.1 569710 R 1171376 CDS YP_007901647.1 482903087 complement(570176..571360) 1 NC_021151.1 COG2807 Cyanate permease; hypothetical protein 571360 1171376000547 STU288_02710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901647.1 570176 R 1171376 CDS YP_007901648.1 482903088 571461..572255 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative HTH-type transcriptional regulator yeaM 572255 1171376000548 STU288_02715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator yeaM YP_007901648.1 571461 D 1171376 CDS YP_007901649.1 482903089 complement(572235..572681) 1 NC_021151.1 COG2707 Predicted membrane protein; hypothetical protein 572681 1171376000549 STU288_02720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901649.1 572235 R 1171376 CDS YP_007901650.1 482903090 572887..572994 1 NC_021151.1 hypothetical protein 572994 1171376000550 STU288_02725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901650.1 572887 D 1171376 CDS YP_007901651.1 482903091 complement(572991..573518) 1 NC_021151.1 COG2606 Uncharacterized conserved protein; protein YeaK 573518 1171376000551 STU288_02730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein YeaK YP_007901651.1 572991 R 1171376 CDS YP_007901652.1 482903092 complement(573559..575052) 1 NC_021151.1 COG2199 FOG: GGDEF domain; hypothetical protein 575052 1171376000552 STU288_02735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901652.1 573559 R 1171376 CDS YP_007901653.1 482903093 complement(575693..576979) 1 NC_021151.1 COG2718 Uncharacterized conserved protein; hypothetical protein 576979 1171376000553 STU288_02740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901653.1 575693 R 1171376 CDS YP_007901654.1 482903094 complement(577102..579036) 1 NC_021151.1 COG2766 Putative Ser protein kinase; PrkA family serine protein kinase 579036 1171376000554 STU288_02745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PrkA family serine protein kinase YP_007901654.1 577102 R 1171376 CDS YP_007901655.1 482903095 579463..580209 1 NC_021151.1 COG3713 Outer membrane protein V; MltA-interacting protein MipA 580209 1171376000555 STU288_02750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MltA-interacting protein MipA YP_007901655.1 579463 D 1171376 CDS YP_007901656.1 482903096 580499..581695 1 NC_021151.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase regulator 581695 1171376000556 STU288_02755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arylsulfatase regulator YP_007901656.1 580499 D 1171376 CDS YP_007901657.1 482903097 581792..582649 1 NC_021151.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 582649 1171376000557 STU288_02760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901657.1 581792 D 1171376 CDS YP_007901658.1 482903098 complement(582748..583632) 1 NC_021151.1 COG0676 Uncharacterized enzymes related to aldose 1-epimerase; aldose 1-epimerase 583632 1171376000558 STU288_02765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldose 1-epimerase YP_007901658.1 582748 R 1171376 CDS YP_007901659.1 482903099 complement(583632..583814) 1 NC_021151.1 hypothetical protein 583814 1171376000559 STU288_02770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901659.1 583632 R 1171376 CDS YP_007901660.1 482903100 complement(583967..584962) 1 NC_021151.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase A 584962 gapA 1171376000560 gapA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glyceraldehyde-3-phosphate dehydrogenase A YP_007901660.1 583967 R 1171376 CDS YP_007901661.1 482903101 585304..585717 1 NC_021151.1 COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; methionine sulfoxide reductase B 585717 1171376000561 STU288_02780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionine sulfoxide reductase B YP_007901661.1 585304 D 1171376 CDS YP_007901662.1 482903102 585759..586037 1 NC_021151.1 COG3139 Uncharacterized protein conserved in bacteria; hypothetical protein 586037 1171376000562 STU288_02785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901662.1 585759 D 1171376 CDS YP_007901663.1 482903103 complement(586389..586907) 1 NC_021151.1 COG1335 Amidases related to nicotinamidase; nicotinamidase/pyrazinamidase 586907 1171376000563 STU288_02790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nicotinamidase/pyrazinamidase YP_007901663.1 586389 R 1171376 CDS YP_007901664.1 482903104 complement(587071..588087) 1 NC_021151.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; cytoplasmic asparaginase I 588087 ansA 1171376000564 ansA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoplasmic asparaginase I YP_007901664.1 587071 R 1171376 CDS YP_007901665.1 482903105 complement(588183..590039) 1 NC_021151.1 COG0616 Periplasmic serine proteases (ClpP class); protease 4 590039 1171376000565 STU288_02800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease 4 YP_007901665.1 588183 R 1171376 CDS YP_007901666.1 482903106 590213..590764 1 NC_021151.1 COG0778 Nitroreductase; oxidoreductase 590764 1171376000566 STU288_02805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901666.1 590213 D 1171376 CDS YP_007901667.1 482903107 590882..591925 1 NC_021151.1 COG0709 Selenophosphate synthase; selenophosphate synthetase 591925 1171376000567 STU288_02810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 selenophosphate synthetase YP_007901667.1 590882 D 1171376 CDS YP_007901668.1 482903108 591930..593879 1 NC_021151.1 COG0550 Topoisomerase IA; DNA topoisomerase III 593879 1171376000568 STU288_02815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA topoisomerase III YP_007901668.1 591930 D 1171376 CDS YP_007901669.1 482903109 complement(593909..595252) 1 NC_021151.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 595252 1171376000569 STU288_02820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate dehydrogenase YP_007901669.1 593909 R 1171376 CDS YP_007901670.1 482903110 595491..595766 1 NC_021151.1 hypothetical protein 595766 1171376000570 STU288_02825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901670.1 595491 D 1171376 CDS YP_007901671.1 482903111 complement(595726..596142) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 596142 1171376000571 STU288_02830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_007901671.1 595726 R 1171376 CDS YP_007901672.1 482903112 complement(596215..597021) 1 NC_021151.1 COG0708 Exonuclease III; exonuclease III 597021 1171376000572 STU288_02835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease III YP_007901672.1 596215 R 1171376 CDS YP_007901673.1 482903113 597467..598693 1 NC_021151.1 COG4992 Ornithine/acetylornithine aminotransferase; bifunctional succinylornithine transaminase/acetylornithine transaminase 598693 1171376000573 STU288_02840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_007901673.1 597467 D 1171376 CDS YP_007901674.1 482903114 598684..599718 1 NC_021151.1 COG3138 Arginine/ornithine N-succinyltransferase beta subunit; arginine succinyltransferase 599718 1171376000574 STU288_02845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine succinyltransferase YP_007901674.1 598684 D 1171376 CDS YP_007901675.1 482903115 599715..601193 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinylglutamic semialdehyde dehydrogenase 601193 astD 1171376000575 astD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinylglutamic semialdehyde dehydrogenase YP_007901675.1 599715 D 1171376 CDS YP_007901676.1 482903116 601190..602533 1 NC_021151.1 COG3724 Succinylarginine dihydrolase; succinylarginine dihydrolase 602533 1171376000576 STU288_02855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinylarginine dihydrolase YP_007901676.1 601190 D 1171376 CDS YP_007901677.1 482903117 602526..603494 1 NC_021151.1 COG2988 Succinylglutamate desuccinylase; succinylglutamate desuccinylase 603494 1171376000577 STU288_02860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinylglutamate desuccinylase YP_007901677.1 602526 D 1171376 CDS YP_007901678.1 482903118 603830..604315 1 NC_021151.1 COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic protein 604315 1171376000578 STU288_02865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic protein YP_007901678.1 603830 D 1171376 CDS YP_007901679.1 482903119 complement(604390..605271) 1 NC_021151.1 COG0322 Nuclease subunit of the excinuclease complex; nucleotide excision repair endonuclease 605271 1171376000579 STU288_02870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleotide excision repair endonuclease YP_007901679.1 604390 R 1171376 CDS YP_007901680.1 482903120 complement(605392..606219) 1 NC_021151.1 COG0171 NAD synthase; NAD synthetase 606219 nadE 1171376000580 nadE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD synthetase YP_007901680.1 605392 R 1171376 CDS YP_007901681.1 482903121 606438..606779 1 NC_021151.1 DNA-binding transcriptional activator OsmE 606779 1171376000581 STU288_02880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator OsmE YP_007901681.1 606438 D 1171376 CDS YP_007901682.1 482903122 607080..607400 1 NC_021151.1 COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 607400 1171376000582 STU288_02885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_007901682.1 607080 D 1171376 CDS YP_007901683.1 482903123 607483..608841 1 NC_021151.1 COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 608841 1171376000583 STU288_02890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_007901683.1 607483 D 1171376 CDS YP_007901684.1 482903124 608892..609239 1 NC_021151.1 COG1447 Phosphotransferase system cellobiose-specific component IIA; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 609239 1171376000584 STU288_02895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_007901684.1 608892 D 1171376 CDS YP_007901685.1 482903125 609250..610092 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator ChbR 610092 1171376000585 STU288_02900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator ChbR YP_007901685.1 609250 D 1171376 CDS YP_007901686.1 482903126 610217..611572 1 NC_021151.1 COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; diacetylchitobiose-6-phosphate hydrolase 611572 1171376000586 STU288_02905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diacetylchitobiose-6-phosphate hydrolase YP_007901686.1 610217 D 1171376 CDS YP_007901687.1 482903127 611585..612343 1 NC_021151.1 COG3394 Uncharacterized protein conserved in bacteria; hypothetical protein 612343 1171376000587 STU288_02910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901687.1 611585 D 1171376 CDS YP_007901688.1 482903128 complement(612387..614639) 1 NC_021151.1 COG0753 Catalase; hydroperoxidase II 614639 katE 1171376000588 katE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroperoxidase II YP_007901688.1 612387 R 1171376 CDS YP_007901689.1 482903129 615004..615246 1 NC_021151.1 cell division modulator 615246 1171376000589 STU288_02920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division modulator YP_007901689.1 615004 D 1171376 CDS YP_007901690.1 482903130 complement(615348..616739) 1 NC_021151.1 COG1823 Predicted Na+/dicarboxylate symporter; sodium:dicarboxylate symporter family protein 616739 1171376000590 STU288_02925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium:dicarboxylate symporter family protein YP_007901690.1 615348 R 1171376 CDS YP_007901691.1 482903131 complement(616876..617463) 1 NC_021151.1 COG1988 Predicted membrane-bound metal-dependent hydrolases; hypothetical protein 617463 1171376000591 STU288_02930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901691.1 616876 R 1171376 CDS YP_007901692.1 482903132 complement(617613..618281) 1 NC_021151.1 COG0637 Predicted phosphatase/phosphohexomutase; 2-deoxyglucose-6-phosphatase 618281 1171376000592 STU288_02935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-deoxyglucose-6-phosphatase YP_007901692.1 617613 R 1171376 CDS YP_007901693.1 482903133 618430..618966 1 NC_021151.1 hypothetical protein 618966 1171376000593 STU288_02940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901693.1 618430 D 1171376 CDS YP_007901694.1 482903134 complement(619009..619869) 1 NC_021151.1 COG3001 Fructosamine-3-kinase; hypothetical protein 619869 1171376000594 STU288_02945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901694.1 619009 R 1171376 CDS YP_007901695.1 482903135 complement(619976..620266) 1 NC_021151.1 hypothetical protein 620266 1171376000595 STU288_02950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901695.1 619976 R 1171376 CDS YP_007901696.1 482903136 complement(620363..621295) 1 NC_021151.1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 6-phosphofructokinase 2 621295 1171376000596 STU288_02955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phosphofructokinase 2 YP_007901696.1 620363 R 1171376 CDS YP_007901697.1 482903137 621584..622342 1 NC_021151.1 COG3137 Putative salt-induced outer membrane protein; hypothetical protein 622342 1171376000597 STU288_02960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901697.1 621584 D 1171376 CDS YP_007901698.1 482903138 complement(622391..623350) 1 NC_021151.1 COG3528 Uncharacterized protein conserved in bacteria; outer membrane protein 623350 1171376000598 STU288_02965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein YP_007901698.1 622391 R 1171376 CDS YP_007901699.1 482903139 623493..623807 1 NC_021151.1 hypothetical protein 623807 1171376000599 STU288_02970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901699.1 623493 D 1171376 CDS YP_007901700.1 482903140 623804..624658 1 NC_021151.1 COG1864 DNA/RNA endonuclease G, NUC1; putative DNA/RNA non-specific endonuclease 624658 1171376000600 STU288_02975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA/RNA non-specific endonuclease YP_007901700.1 623804 D 1171376 CDS YP_007901701.1 482903141 complement(625360..626583) 1 NC_021151.1 O-antigen polymerase 626583 1171376000601 STU288_02980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen polymerase YP_007901701.1 625360 R 1171376 CDS YP_007901702.1 482903142 627475..629403 1 NC_021151.1 COG0441 Threonyl-tRNA synthetase; threonyl-tRNA ligase 629403 thrS 1171376000602 thrS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonyl-tRNA ligase YP_007901702.1 627475 D 1171376 CDS YP_007901703.1 482903143 629515..629949 1 NC_021151.1 COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 629949 1171376000603 STU288_02990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translation initiation factor IF-3 YP_007901703.1 629515 D 1171376 CDS YP_007901704.1 482903144 630045..630242 1 NC_021151.1 COG0291 Ribosomal protein L35; 50S ribosomal protein L35 630242 rpmI 1171376000604 rpmI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L35 YP_007901704.1 630045 D 1171376 CDS YP_007901705.1 482903145 630293..630649 1 NC_021151.1 COG0292 Ribosomal protein L20; LSU ribosomal protein L20P 630649 1171376000605 STU288_03000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LSU ribosomal protein L20P YP_007901705.1 630293 D 1171376 CDS YP_007901706.1 482903146 630951..631934 1 NC_021151.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA ligase subunit alpha 631934 pheS 1171376000606 pheS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phenylalanyl-tRNA ligase subunit alpha YP_007901706.1 630951 D 1171376 CDS YP_007901707.1 482903147 631950..634337 1 NC_021151.1 COG0073 EMAP domain; phenylalanyl-tRNA ligase subunit beta 634337 pheT 1171376000607 pheT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phenylalanyl-tRNA ligase subunit beta YP_007901707.1 631950 D 1171376 CDS YP_007901708.1 482903148 634342..634641 1 NC_021151.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit alpha 634641 ihfA 1171376000608 ihfA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integration host factor subunit alpha YP_007901708.1 634342 D 1171376 CDS YP_007901709.1 482903149 634844..635824 1 NC_021151.1 COG4139 ABC-type cobalamin transport system, permease component; vtamin B12-transporter permease 635824 1171376000609 STU288_03020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 vtamin B12-transporter permease YP_007901709.1 634844 D 1171376 CDS YP_007901710.1 482903150 635916..636467 1 NC_021151.1 COG0386 Glutathione peroxidase; glutathione peroxidase 636467 btuE 1171376000610 btuE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione peroxidase YP_007901710.1 635916 D 1171376 CDS YP_007901711.1 482903151 636467..637216 1 NC_021151.1 COG4138 ABC-type cobalamin transport system, ATPase component; vitamin B12-transporter ATPase 637216 1171376000611 STU288_03030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 vitamin B12-transporter ATPase YP_007901711.1 636467 D 1171376 CDS YP_007901712.1 482903152 637293..637757 1 NC_021151.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein nlpC 637757 1171376000612 STU288_03035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein nlpC YP_007901712.1 637293 D 1171376 CDS YP_007901713.1 482903153 638071..638784 1 NC_021151.1 COG2200 FOG: EAL domain; hypothetical protein 638784 1171376000613 STU288_03040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901713.1 638071 D 1171376 CDS YP_007901714.1 482903154 638846..640288 1 NC_021151.1 COG0397 Uncharacterized conserved protein; hypothetical protein 640288 1171376000614 STU288_03045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901714.1 638846 D 1171376 CDS YP_007901715.1 482903155 complement(640323..640514) 1 NC_021151.1 COG4256 Hemin uptake protein; hypothetical protein 640514 1171376000615 STU288_03050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901715.1 640323 R 1171376 CDS YP_007901716.1 482903156 complement(640671..641717) 1 NC_021151.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 641717 1171376000616 STU288_03055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospho-2-dehydro-3-deoxyheptonate aldolase YP_007901716.1 640671 R 1171376 CDS YP_007901717.1 482903157 complement(641873..642706) 1 NC_021151.1 COG1806 Uncharacterized protein conserved in bacteria; PEP synthetase regulatory protein 642706 1171376000617 STU288_03060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PEP synthetase regulatory protein YP_007901717.1 641873 R 1171376 CDS YP_007901718.1 482903158 complement(642883..642996) 1 NC_021151.1 hypothetical protein 642996 1171376000618 STU288_03065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901718.1 642883 R 1171376 CDS YP_007901719.1 482903159 643043..645421 1 NC_021151.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 645421 1171376000619 STU288_03070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate synthase YP_007901719.1 643043 D 1171376 CDS YP_007901720.1 482903160 complement(645463..647103) 1 NC_021151.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; short chain acyl-CoA synthetase 647103 1171376000620 STU288_03075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 short chain acyl-CoA synthetase YP_007901720.1 645463 R 1171376 CDS YP_007901721.1 482903161 complement(647193..647486) 1 NC_021151.1 COG2440 Ferredoxin-like protein; 4Fe-4S ferredoxin 647486 1171376000621 STU288_03080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4Fe-4S ferredoxin YP_007901721.1 647193 R 1171376 CDS YP_007901722.1 482903162 complement(647483..648769) 1 NC_021151.1 COG0644 Dehydrogenases (flavoproteins); oxidoreductase 648769 1171376000622 STU288_03085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901722.1 647483 R 1171376 CDS YP_007901723.1 482903163 complement(648826..649761) 1 NC_021151.1 COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit YdiR 649761 1171376000623 STU288_03090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transfer flavoprotein subunit YdiR YP_007901723.1 648826 R 1171376 CDS YP_007901724.1 482903164 complement(649783..650547) 1 NC_021151.1 COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein 650547 1171376000624 STU288_03095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901724.1 649783 R 1171376 CDS YP_007901725.1 482903165 651010..651900 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional regulator 651900 1171376000625 STU288_03100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional regulator YP_007901725.1 651010 D 1171376 CDS YP_007901726.1 482903166 complement(651976..653127) 1 NC_021151.1 COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 653127 1171376000626 STU288_03105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA dehydrogenase YP_007901726.1 651976 R 1171376 CDS YP_007901727.1 482903167 complement(653141..654736) 1 NC_021151.1 COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; propionate CoA-transferase 654736 1171376000627 STU288_03110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propionate CoA-transferase YP_007901727.1 653141 R 1171376 CDS YP_007901728.1 482903168 complement(654890..655648) 1 NC_021151.1 COG0710 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 655648 aroD 1171376000628 aroD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-dehydroquinate dehydratase YP_007901728.1 654890 R 1171376 CDS YP_007901729.1 482903169 complement(655693..656559) 1 NC_021151.1 COG0169 Shikimate 5-dehydrogenase; quinate/shikimate dehydrogenase 656559 1171376000629 STU288_03120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinate/shikimate dehydrogenase YP_007901729.1 655693 R 1171376 CDS YP_007901730.1 482903170 complement(656626..657861) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 657861 1171376000630 STU288_03125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007901730.1 656626 R 1171376 CDS YP_007901731.1 482903171 complement(658225..659436) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 659436 1171376000631 STU288_03130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007901731.1 658225 R 1171376 CDS YP_007901732.1 482903172 complement(659577..659933) 1 NC_021151.1 hypothetical protein 659933 1171376000632 STU288_03135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901732.1 659577 R 1171376 CDS YP_007901733.1 482903173 complement(660394..661512) 1 NC_021151.1 COG0628 Predicted permease; hypothetical protein 661512 1171376000633 STU288_03140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901733.1 660394 R 1171376 CDS YP_007901734.1 482903174 661777..664833 1 NC_021151.1 COG0277 FAD/FMN-containing dehydrogenases; FAD-binding protein 664833 1171376000634 STU288_03145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FAD-binding protein YP_007901734.1 661777 D 1171376 CDS YP_007901735.1 482903175 664830..665240 1 NC_021151.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; acyl-CoA esterase 665240 1171376000635 STU288_03150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA esterase YP_007901735.1 664830 D 1171376 CDS YP_007901736.1 482903176 665339..665527 1 NC_021151.1 putative cytoplasmic protein 665527 1171376000636 STU288_03155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901736.1 665339 D 1171376 CDS YP_007901737.1 482903177 complement(665815..667161) 1 NC_021151.1 COG1823 Predicted Na+/dicarboxylate symporter; putative Na+-dicarboxylate symporter 667161 1171376000637 STU288_03160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative Na+-dicarboxylate symporter YP_007901737.1 665815 R 1171376 CDS YP_007901738.1 482903178 667588..667956 1 NC_021151.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly scaffold protein 667956 sufA 1171376000638 sufA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-sulfur cluster assembly scaffold protein YP_007901738.1 667588 D 1171376 CDS YP_007901739.1 482903179 667965..669452 1 NC_021151.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufB 669452 1171376000639 STU288_03170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine desulfurase activator complex subunit SufB YP_007901739.1 667965 D 1171376 CDS YP_007901740.1 482903180 669469..670215 1 NC_021151.1 COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; cysteine desulfurase ATPase component 670215 sufC 1171376000640 sufC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine desulfurase ATPase component YP_007901740.1 669469 D 1171376 CDS YP_007901741.1 482903181 670190..671461 1 NC_021151.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufD 671461 1171376000641 STU288_03180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine desulfurase activator complex subunit SufD YP_007901741.1 670190 D 1171376 CDS YP_007901742.1 482903182 671458..672678 1 NC_021151.1 COG0520 Selenocysteine lyase; bifunctional cysteine desulfurase/selenocysteine lyase 672678 1171376000642 STU288_03185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional cysteine desulfurase/selenocysteine lyase YP_007901742.1 671458 D 1171376 CDS YP_007901743.1 482903183 672691..673107 1 NC_021151.1 COG2166 SufE protein probably involved in Fe-S center assembly; cysteine desufuration protein SufE 673107 1171376000643 STU288_03190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine desufuration protein SufE YP_007901743.1 672691 D 1171376 CDS YP_007901744.1 482903184 673262..674263 1 NC_021151.1 COG1376 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 674263 1171376000644 STU288_03195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein L,D-transpeptidase YP_007901744.1 673262 D 1171376 CDS YP_007901745.1 482903185 complement(674330..674569) 1 NC_021151.1 COG4238 Murein lipoprotein; murein lipoprotein 674569 1171376000645 STU288_03200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein lipoprotein YP_007901745.1 674330 R 1171376 CDS YP_007901746.1 482903186 complement(674652..674888) 1 NC_021151.1 COG4238 Murein lipoprotein; murein lipoprotein 674888 1171376000646 STU288_03205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein lipoprotein YP_007901746.1 674652 R 1171376 CDS YP_007901747.1 482903187 complement(675199..676611) 1 NC_021151.1 COG0469 Pyruvate kinase; pyruvate kinase 676611 1171376000647 STU288_03210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate kinase YP_007901747.1 675199 R 1171376 CDS YP_007901748.1 482903188 complement(677013..678356) 1 NC_021151.1 COG0531 Amino acid transporters; amino acid permease 678356 1171376000648 STU288_03215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid permease YP_007901748.1 677013 R 1171376 CDS YP_007901749.1 482903189 complement(678378..679271) 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hydrolase 679271 1171376000649 STU288_03220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007901749.1 678378 R 1171376 CDS YP_007901750.1 482903190 complement(679330..680067) 1 NC_021151.1 COG5426 Uncharacterized membrane protein; hypothetical protein 680067 1171376000650 STU288_03225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901750.1 679330 R 1171376 CDS YP_007901751.1 482903191 complement(680079..681305) 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; ribokinase/regulatory protein 681305 1171376000651 STU288_03230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribokinase/regulatory protein YP_007901751.1 680079 R 1171376 CDS YP_007901752.1 482903192 complement(681628..684690) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; tetrathionate reductase subunit A 684690 1171376000652 STU288_03235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetrathionate reductase subunit A YP_007901752.1 681628 R 1171376 CDS YP_007901753.1 482903193 complement(684683..685705) 1 NC_021151.1 tetrathionate reductase subunit C 685705 1171376000653 STU288_03240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetrathionate reductase subunit C YP_007901753.1 684683 R 1171376 CDS YP_007901754.1 482903194 complement(685706..686440) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; tetrathionate reductase subunit B 686440 1171376000654 STU288_03245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetrathionate reductase subunit B YP_007901754.1 685706 R 1171376 CDS YP_007901755.1 482903195 686652..688400 1 NC_021151.1 COG0642 Signal transduction histidine kinase; histidine kinase, two component regulatory protein 688400 1171376000655 STU288_03250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine kinase, two component regulatory protein YP_007901755.1 686652 D 1171376 CDS YP_007901756.1 482903196 688375..688995 1 NC_021151.1 COG4566 Response regulator; response regulator 688995 1171376000656 STU288_03255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 response regulator YP_007901756.1 688375 D 1171376 CDS YP_007901757.1 482903197 689093..689305 1 NC_021151.1 hypothetical protein 689305 1171376000657 STU288_03260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901757.1 689093 D 1171376 CDS YP_007901758.1 482903198 complement(689401..690360) 1 NC_021151.1 COG1683 Uncharacterized conserved protein; hypothetical protein 690360 1171376000658 STU288_03265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901758.1 689401 R 1171376 CDS YP_007901759.1 482903199 complement(690533..691261) 1 NC_021151.1 COG0789 Predicted transcriptional regulators; putative regulatory protein 691261 1171376000659 STU288_03270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007901759.1 690533 R 1171376 CDS YP_007901760.1 482903200 complement(691440..692078) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two component system sensor kinase SsrB 692078 1171376000660 STU288_03275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two component system sensor kinase SsrB YP_007901760.1 691440 R 1171376 CDS YP_007901761.1 482903201 complement(692109..694871) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; two component system sensor kinase SsrA 694871 1171376000661 STU288_03280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two component system sensor kinase SsrA YP_007901761.1 692109 R 1171376 CDS YP_007901762.1 482903202 695272..695673 1 NC_021151.1 pathogenicity island chaperone protein SpiC 695673 1171376000662 STU288_03285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island chaperone protein SpiC YP_007901762.1 695272 D 1171376 CDS YP_007901763.1 482903203 695675..697168 1 NC_021151.1 COG1450 Type II secretory pathway, component PulD; outer membrane secretin SsaC 697168 1171376000663 STU288_03290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane secretin SsaC YP_007901763.1 695675 D 1171376 CDS YP_007901764.1 482903204 697149..698360 1 NC_021151.1 type III secretion system protein SsaD 698360 1171376000664 STU288_03295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaD YP_007901764.1 697149 D 1171376 CDS YP_007901765.1 482903205 698368..698610 1 NC_021151.1 type III secretion system chaperone SsaE 698610 1171376000665 STU288_03300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system chaperone SsaE YP_007901765.1 698368 D 1171376 CDS YP_007901766.1 482903206 698874..699200 1 NC_021151.1 COG0078 Ornithine carbamoyltransferase; type III secretion system chaperone SseA 699200 1171376000666 STU288_03305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system chaperone SseA YP_007901766.1 698874 D 1171376 CDS YP_007901767.1 482903207 699207..699797 1 NC_021151.1 pathogenicity island 2 effector protein SseB 699797 1171376000667 STU288_03310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseB YP_007901767.1 699207 D 1171376 CDS YP_007901768.1 482903208 699794..700267 1 NC_021151.1 COG0457 FOG: TPR repeat; pathogenicity island 2 chaperone protein SscA 700267 1171376000668 STU288_03315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 chaperone protein SscA YP_007901768.1 699794 D 1171376 CDS YP_007901769.1 482903209 700270..701724 1 NC_021151.1 COG5613 Uncharacterized conserved protein; pathogenicity island 2 effector protein SseC 701724 1171376000669 STU288_03320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseC YP_007901769.1 700270 D 1171376 CDS YP_007901770.1 482903210 701740..702327 1 NC_021151.1 pathogenicity island 2 effector protein SseD 702327 1171376000670 STU288_03325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseD YP_007901770.1 701740 D 1171376 CDS YP_007901771.1 482903211 702330..702746 1 NC_021151.1 COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); pathogenicity island 2 effector protein SseE 702746 1171376000671 STU288_03330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseE YP_007901771.1 702330 D 1171376 CDS YP_007901772.1 482903212 702798..703232 1 NC_021151.1 COG0457 FOG: TPR repeat; type III secretion system chaperone protein SscB 703232 1171376000672 STU288_03335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system chaperone protein SscB YP_007901772.1 702798 D 1171376 CDS YP_007901773.1 482903213 703248..704030 1 NC_021151.1 pathogenicity island 2 effector protein SseF 704030 1171376000673 STU288_03340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseF YP_007901773.1 703248 D 1171376 CDS YP_007901774.1 482903214 704027..704716 1 NC_021151.1 pathogenicity island 2 effector protein SseG 704716 1171376000674 STU288_03345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseG YP_007901774.1 704027 D 1171376 CDS YP_007901775.1 482903215 704810..705025 1 NC_021151.1 type III secretion system needle protein SsaG 705025 1171376000675 STU288_03350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system needle protein SsaG YP_007901775.1 704810 D 1171376 CDS YP_007901776.1 482903216 705066..705293 1 NC_021151.1 type III secretion system protein SsaH 705293 1171376000676 STU288_03355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaH YP_007901776.1 705066 D 1171376 CDS YP_007901777.1 482903217 705305..705553 1 NC_021151.1 type III secretion system protein SsaI 705553 1171376000677 STU288_03360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaI YP_007901777.1 705305 D 1171376 CDS YP_007901778.1 482903218 705550..706299 1 NC_021151.1 COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein SsaJ 706299 1171376000678 STU288_03365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system lipoprotein SsaJ YP_007901778.1 705550 D 1171376 CDS YP_007901779.1 482903219 706317..706865 1 NC_021151.1 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) 706865 1171376000679 STU288_03370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) YP_007901779.1 706317 D 1171376 CDS YP_007901780.1 482903220 706862..707536 1 NC_021151.1 type III secretion system protein SsaK 707536 1171376000680 STU288_03375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaK YP_007901780.1 706862 D 1171376 CDS YP_007901781.1 482903221 707526..708518 1 NC_021151.1 type III secretion system protein SsaL 708518 1171376000681 STU288_03380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaL YP_007901781.1 707526 D 1171376 CDS YP_007901782.1 482903222 708576..708944 1 NC_021151.1 type III secretion system protein SsaM 708944 1171376000682 STU288_03385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaM YP_007901782.1 708576 D 1171376 CDS YP_007901783.1 482903223 708929..710974 1 NC_021151.1 COG4789 Type III secretory pathway, component EscV; secretion system apparatus protein SsaV 710974 1171376000683 STU288_03390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secretion system apparatus protein SsaV YP_007901783.1 708929 D 1171376 CDS YP_007901784.1 482903224 710964..712265 1 NC_021151.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; type III secretion system ATPase SsaN 712265 1171376000684 STU288_03395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system ATPase SsaN YP_007901784.1 710964 D 1171376 CDS YP_007901785.1 482903225 712268..712645 1 NC_021151.1 type III secretion system protein SsaO 712645 1171376000685 STU288_03400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaO YP_007901785.1 712268 D 1171376 CDS YP_007901786.1 482903226 712626..713000 1 NC_021151.1 type III secretion system protein SsaP 713000 1171376000686 STU288_03405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaP YP_007901786.1 712626 D 1171376 CDS YP_007901787.1 482903227 712981..713949 1 NC_021151.1 COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SsaQ 713949 1171376000687 STU288_03410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaQ YP_007901787.1 712981 D 1171376 CDS YP_007901788.1 482903228 714017..714664 1 NC_021151.1 COG4790 Type III secretory pathway, component EscR; type III secretion system protein YscR 714664 1171376000688 STU288_03415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein YscR YP_007901788.1 714017 D 1171376 CDS YP_007901789.1 482903229 714661..714927 1 NC_021151.1 COG4794 Type III secretory pathway, component EscS; type III secretion system protein SsaS 714927 1171376000689 STU288_03420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaS YP_007901789.1 714661 D 1171376 CDS YP_007901790.1 482903230 714928..715707 1 NC_021151.1 COG4791 Type III secretory pathway, component EscT; type III secretion system protein SsaT 715707 1171376000690 STU288_03425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SsaT YP_007901790.1 714928 D 1171376 CDS YP_007901791.1 482903231 715704..716762 1 NC_021151.1 COG4792 Type III secretory pathway, component EscU; secretion system apparatus protein SsaU 716762 1171376000691 STU288_03430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secretion system apparatus protein SsaU YP_007901791.1 715704 D 1171376 CDS YP_007901792.1 482903232 complement(717235..718608) 1 NC_021151.1 COG0534 Na+-driven multidrug efflux pump; multidrug efflux protein 718608 1171376000694 STU288_03435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux protein YP_007901792.1 717235 R 1171376 CDS YP_007901793.1 482903233 718825..719466 1 NC_021151.1 COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 719466 1171376000695 STU288_03440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 riboflavin synthase subunit alpha YP_007901793.1 718825 D 1171376 CDS YP_007901794.1 482903234 complement(719508..720656) 1 NC_021151.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acyl phospholipid synthase 720656 1171376000696 STU288_03445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cyclopropane fatty acyl phospholipid synthase YP_007901794.1 719508 R 1171376 CDS YP_007901795.1 482903235 complement(720946..722151) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transporter 722151 1171376000697 STU288_03450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007901795.1 720946 R 1171376 CDS YP_007901796.1 482903236 722264..723196 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 723196 1171376000698 STU288_03455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007901796.1 722264 D 1171376 CDS YP_007901797.1 482903237 complement(723193..724218) 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional repressor PurR 724218 1171376000699 STU288_03460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor PurR YP_007901797.1 723193 R 1171376 CDS YP_007901798.1 482903238 724514..724603 1 NC_021151.1 hypothetical protein 724603 1171376000700 STU288_03465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901798.1 724514 D 1171376 CDS YP_007901799.1 482903239 complement(724686..725267) 1 NC_021151.1 COG0605 Superoxide dismutase; superoxide dismutase 725267 1171376000701 STU288_03470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 superoxide dismutase YP_007901799.1 724686 R 1171376 CDS YP_007901800.1 482903240 complement(725394..726215) 1 NC_021151.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 726215 1171376000702 STU288_03475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901800.1 725394 R 1171376 CDS YP_007901801.1 482903241 726550..726897 1 NC_021151.1 COG0278 Glutaredoxin-related protein; glutaredoxin-4 726897 1171376000703 STU288_03480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaredoxin-4 YP_007901801.1 726550 D 1171376 CDS YP_007901802.1 482903242 complement(726975..727622) 1 NC_021151.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; ribonuclease T 727622 1171376000704 STU288_03485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease T YP_007901802.1 726975 R 1171376 CDS YP_007901803.1 482903243 complement(727723..728130) 1 NC_021151.1 COG0346 Lactoylglutathione lyase and related lyases; glyoxalase I 728130 1171376000705 STU288_03490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glyoxalase I YP_007901803.1 727723 R 1171376 CDS YP_007901804.1 482903244 complement(728199..729296) 1 NC_021151.1 COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; N-ethylmaleimide reductase 729296 1171376000706 STU288_03495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-ethylmaleimide reductase YP_007901804.1 728199 R 1171376 CDS YP_007901805.1 482903245 complement(729355..729954) 1 NC_021151.1 COG1309 Transcriptional regulator; transcriptional repressor NemR 729954 1171376000707 STU288_03500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor NemR YP_007901805.1 729355 R 1171376 CDS YP_007901806.1 482903246 730057..730296 1 NC_021151.1 COG3313 Predicted Fe-S protein; putative oxidoreductase 730296 1171376000708 STU288_03505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative oxidoreductase YP_007901806.1 730057 D 1171376 CDS YP_007901807.1 482903247 730347..731243 1 NC_021151.1 COG4989 Predicted oxidoreductase; oxidoreductase 731243 1171376000709 STU288_03510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901807.1 730347 D 1171376 CDS YP_007901808.1 482903248 731323..731844 1 NC_021151.1 COG2032 Cu/Zn superoxide dismutase; superoxide dismutase 731844 1171376000710 STU288_03515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 superoxide dismutase YP_007901808.1 731323 D 1171376 CDS YP_007901809.1 482903249 complement(731820..733859) 1 NC_021151.1 COG1289 Predicted membrane protein; putative inner membrane protein 733859 1171376000711 STU288_03520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007901809.1 731820 R 1171376 CDS YP_007901810.1 482903250 complement(733859..734719) 1 NC_021151.1 COG1566 Multidrug resistance efflux pump; HlyD-family protein 734719 1171376000712 STU288_03525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HlyD-family protein YP_007901810.1 733859 R 1171376 CDS YP_007901811.1 482903251 complement(734722..734958) 1 NC_021151.1 putative inner membrane protein 734958 1171376000713 STU288_03530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007901811.1 734722 R 1171376 CDS YP_007901812.1 482903252 735159..735593 1 NC_021151.1 COG1846 Transcriptional regulators; transcriptional regulator SlyA 735593 1171376000714 STU288_03535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator SlyA YP_007901812.1 735159 D 1171376 CDS YP_007901813.1 482903253 complement(735641..736108) 1 NC_021151.1 COG3133 Outer membrane lipoprotein; outer membrane lipoprotein SlyB 736108 1171376000715 STU288_03540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein SlyB YP_007901813.1 735641 R 1171376 CDS YP_007901814.1 482903254 736380..737501 1 NC_021151.1 COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases; anhydro-N-acetylmuramic acid kinase 737501 anmK 1171376000716 anmK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anhydro-N-acetylmuramic acid kinase YP_007901814.1 736380 D 1171376 CDS YP_007901815.1 482903255 737589..737918 1 NC_021151.1 COG3895 Predicted periplasmic protein; lysozyme inhibitor 737918 1171376000717 STU288_03550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysozyme inhibitor YP_007901815.1 737589 D 1171376 CDS YP_007901816.1 482903256 737977..738633 1 NC_021151.1 COG0259 Pyridoxamine-phosphate oxidase; pyridoxamine 5'-phosphate oxidase 738633 1171376000718 STU288_03555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxamine 5'-phosphate oxidase YP_007901816.1 737977 D 1171376 CDS YP_007901817.1 482903257 738760..740034 1 NC_021151.1 COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA ligase 740034 1171376000719 STU288_03560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tyrosyl-tRNA ligase YP_007901817.1 738760 D 1171376 CDS YP_007901818.1 482903258 740094..740954 1 NC_021151.1 COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxamine kinase 740954 1171376000720 STU288_03565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxamine kinase YP_007901818.1 740094 D 1171376 CDS YP_007901819.1 482903259 complement(741013..741618) 1 NC_021151.1 COG0625 Glutathione S-transferase; glutathionine S-transferase 741618 1171376000721 STU288_03570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathionine S-transferase YP_007901819.1 741013 R 1171376 CDS YP_007901820.1 482903260 complement(741723..743228) 1 NC_021151.1 COG3104 Dipeptide/tripeptide permease; tripeptide transporter permease 743228 tppB 1171376000722 tppB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tripeptide transporter permease YP_007901820.1 741723 R 1171376 CDS YP_007901821.1 482903261 complement(743830..744465) 1 NC_021151.1 COG0177 Predicted EndoIII-related endonuclease; endonuclease III 744465 1171376000723 STU288_03580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease III YP_007901821.1 743830 R 1171376 CDS YP_007901822.1 482903262 complement(744465..745157) 1 NC_021151.1 COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; electron transport complex RsxE subunit 745157 1171376000724 STU288_03585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex RsxE subunit YP_007901822.1 744465 R 1171376 CDS YP_007901823.1 482903263 complement(745160..745780) 1 NC_021151.1 COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; electron transport complex protein RnfG 745780 1171376000725 STU288_03590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex protein RnfG YP_007901823.1 745160 R 1171376 CDS YP_007901824.1 482903264 complement(745784..746842) 1 NC_021151.1 COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; electron transport complex protein RnfD 746842 rnfD 1171376000726 rnfD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex protein RnfD YP_007901824.1 745784 R 1171376 CDS YP_007901825.1 482903265 complement(746843..749050) 1 NC_021151.1 COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; electron transport complex protein RnfC 749050 1171376000727 STU288_03600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex protein RnfC YP_007901825.1 746843 R 1171376 CDS YP_007901826.1 482903266 complement(749043..749621) 1 NC_021151.1 COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; electron transport complex protein RnfB 749621 1171376000728 STU288_03605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex protein RnfB YP_007901826.1 749043 R 1171376 CDS YP_007901827.1 482903267 complement(749621..750202) 1 NC_021151.1 COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; electron transport complex protein RsxA 750202 1171376000729 STU288_03610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transport complex protein RsxA YP_007901827.1 749621 R 1171376 CDS YP_007901828.1 482903268 complement(750279..750719) 1 NC_021151.1 hypothetical protein 750719 1171376000730 STU288_03615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901828.1 750279 R 1171376 CDS YP_007901829.1 482903269 complement(750808..751023) 1 NC_021151.1 oriC-binding nucleoid-associated protein 751023 1171376000731 STU288_03620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oriC-binding nucleoid-associated protein YP_007901829.1 750808 R 1171376 CDS YP_007901830.1 482903270 751654..752694 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 752694 1171376000732 STU288_03625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901830.1 751654 D 1171376 CDS YP_007901831.1 482903271 complement(752769..753770) 1 NC_021151.1 COG1816 Adenosine deaminase; adenosine deaminase 753770 1171376000733 STU288_03630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenosine deaminase YP_007901831.1 752769 R 1171376 CDS YP_007901832.1 482903272 complement(754136..754285) 1 NC_021151.1 COG1264 Phosphotransferase system IIB components; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 754285 1171376000734 STU288_03635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional PTS system maltose and glucose-specific transporter subunits IICB YP_007901832.1 754136 R 1171376 CDS YP_007901833.1 482903273 complement(754474..755982) 1 NC_021151.1 COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein 755982 1171376000735 STU288_03640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901833.1 754474 R 1171376 CDS YP_007901834.1 482903274 complement(756085..757260) 1 NC_021151.1 COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase 757260 1171376000736 STU288_03645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannose-6-phosphate isomerase YP_007901834.1 756085 R 1171376 CDS YP_007901835.1 482903275 757460..759106 1 NC_021151.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumA 759106 1171376000737 STU288_03650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate hydratase FumA YP_007901835.1 757460 D 1171376 CDS YP_007901836.1 482903276 759274..760677 1 NC_021151.1 COG0114 Fumarase; fumarate hydratase 760677 fumC 1171376000738 fumC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate hydratase YP_007901836.1 759274 D 1171376 CDS YP_007901837.1 482903277 complement(760674..761603) 1 NC_021151.1 DNA replication terminus site-binding protein 761603 1171376000739 STU288_03660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA replication terminus site-binding protein YP_007901837.1 760674 R 1171376 CDS YP_007901838.1 482903278 complement(761679..762980) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensor protein RstB 762980 1171376000740 STU288_03665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein RstB YP_007901838.1 761679 R 1171376 CDS YP_007901839.1 482903279 complement(763091..764791) 1 NC_021151.1 COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold; hypothetical protein 764791 1171376000741 STU288_03670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901839.1 763091 R 1171376 CDS YP_007901840.1 482903280 complement(764950..766083) 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane protein 766083 1171376000742 STU288_03675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein YP_007901840.1 764950 R 1171376 CDS YP_007901841.1 482903281 766200..766385 1 NC_021151.1 hypothetical protein 766385 1171376000743 STU288_03680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901841.1 766200 D 1171376 CDS YP_007901842.1 482903282 complement(766563..767294) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator RstA 767294 1171376000744 STU288_03685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator RstA YP_007901842.1 766563 R 1171376 CDS YP_007901843.1 482903283 767421..767756 1 NC_021151.1 COG3136 Uncharacterized membrane protein required for alginate biosynthesis; GlpM family protein 767756 1171376000745 STU288_03690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GlpM family protein YP_007901843.1 767421 D 1171376 CDS YP_007901844.1 482903284 complement(767818..769200) 1 NC_021151.1 COG0531 Amino acid transporters; arginine/ornithine antiporter 769200 1171376000746 STU288_03695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine/ornithine antiporter YP_007901844.1 767818 R 1171376 CDS YP_007901845.1 482903285 complement(769499..770443) 1 NC_021151.1 Protein ydgH Flags: Precursor 770443 1171376000747 STU288_03700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein ydgH Flags: Precursor YP_007901845.1 769499 R 1171376 CDS YP_007901846.1 482903286 770970..772499 1 NC_021151.1 COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha 772499 pntA 1171376000748 pntA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD(P) transhydrogenase subunit alpha YP_007901846.1 770970 D 1171376 CDS YP_007901847.1 482903287 772510..773898 1 NC_021151.1 COG1282 NAD/NADP transhydrogenase beta subunit; pyridine nucleotide transhydrogenase 773898 pntB 1171376000749 pntB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridine nucleotide transhydrogenase YP_007901847.1 772510 D 1171376 CDS YP_007901848.1 482903288 complement(774073..775107) 1 NC_021151.1 COG0628 Predicted permease; pheromone autoinducer 2 transporter 775107 tqsA 1171376000750 tqsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pheromone autoinducer 2 transporter YP_007901848.1 774073 R 1171376 CDS YP_007901849.1 482903289 775525..775887 1 NC_021151.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtJ 775887 1171376000751 STU288_03720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein MdtJ YP_007901849.1 775525 D 1171376 CDS YP_007901850.1 482903290 775874..776203 1 NC_021151.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtI 776203 1171376000752 STU288_03725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein MdtI YP_007901850.1 775874 D 1171376 CDS YP_007901851.1 482903291 complement(776243..777064) 1 NC_021151.1 COG3591 V8-like Glu-specific endopeptidase; hypothetical protein 777064 1171376000753 STU288_03730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901851.1 776243 R 1171376 CDS YP_007901852.1 482903292 complement(777333..777581) 1 NC_021151.1 acid shock protein precursor 777581 1171376000754 STU288_03735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acid shock protein precursor YP_007901852.1 777333 R 1171376 CDS YP_007901853.1 482903293 777817..777909 1 NC_021151.1 hypothetical protein 777909 1171376000755 STU288_03740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901853.1 777817 D 1171376 CDS YP_007901854.1 482903294 complement(777976..779229) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 779229 1171376000756 STU288_03745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transporter YP_007901854.1 777976 R 1171376 CDS YP_007901855.1 482903295 779349..780248 1 NC_021151.1 COG0583 Transcriptional regulator; putative HTH-type transcriptional regulator ywbI 780248 1171376000757 STU288_03750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator ywbI YP_007901855.1 779349 D 1171376 CDS YP_007901856.1 482903296 780376..781596 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional repressor DgsA 781596 1171376000758 STU288_03755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor DgsA YP_007901856.1 780376 D 1171376 CDS YP_007901857.1 482903297 781722..782417 1 NC_021151.1 COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 782417 1171376000759 STU288_03760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dithiobiotin synthetase YP_007901857.1 781722 D 1171376 CDS YP_007901858.1 482903298 complement(782373..783626) 1 NC_021151.1 COG0038 Chloride channel protein EriC; voltage-gated ClC-type chloride channel ClcB 783626 1171376000760 STU288_03765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 voltage-gated ClC-type chloride channel ClcB YP_007901858.1 782373 R 1171376 CDS YP_007901859.1 482903299 complement(783798..784946) 1 NC_021151.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; ABC transporter ATP-binding protein 784946 1171376000761 STU288_03770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007901859.1 783798 R 1171376 CDS YP_007901860.1 482903300 complement(784946..785593) 1 NC_021151.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; Glycine betaine/carnitine/choline transport system permease protein opuCB 785593 1171376000762 STU288_03775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glycine betaine/carnitine/choline transport system permease protein opuCB YP_007901860.1 784946 R 1171376 CDS YP_007901861.1 482903301 complement(785603..786505) 1 NC_021151.1 COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); Glycine betaine/carnitine/choline-binding protein 786505 1171376000763 STU288_03780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glycine betaine/carnitine/choline-binding protein YP_007901861.1 785603 R 1171376 CDS YP_007901862.1 482903302 complement(786534..787244) 1 NC_021151.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; binding-protein-dependent transport system inner membrane protein 787244 1171376000764 STU288_03785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 binding-protein-dependent transport system inner membrane protein YP_007901862.1 786534 R 1171376 CDS YP_007901863.1 482903303 complement(787549..788163) 1 NC_021151.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; twin-argninine leader-binding protein DmsD 788163 1171376000765 STU288_03790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 twin-argninine leader-binding protein DmsD YP_007901863.1 787549 R 1171376 CDS YP_007901864.1 482903304 complement(788206..789063) 1 NC_021151.1 COG3302 DMSO reductase anchor subunit; dimethyl sulfoxide reductase subunit 789063 1171376000766 STU288_03795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dimethyl sulfoxide reductase subunit YP_007901864.1 788206 R 1171376 CDS YP_007901865.1 482903305 complement(789065..789682) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase 789682 1171376000767 STU288_03800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic dimethyl sulfoxide reductase YP_007901865.1 789065 R 1171376 CDS YP_007901866.1 482903306 complement(789693..792128) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; dimethyl sulfoxide reductase subunit 792128 1171376000768 STU288_03805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dimethyl sulfoxide reductase subunit YP_007901866.1 789693 R 1171376 CDS YP_007901867.1 482903307 complement(792227..794665) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a 794665 1171376000769 STU288_03810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic dimethyl sulfoxide reductase chain a YP_007901867.1 792227 R 1171376 CDS YP_007901868.1 482903308 complement(794822..795127) 1 NC_021151.1 hypothetical protein 795127 1171376000770 STU288_03815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901868.1 794822 R 1171376 CDS YP_007901869.1 482903309 795234..795944 1 NC_021151.1 lipoprotein 795944 1171376000771 STU288_03820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007901869.1 795234 D 1171376 CDS YP_007901870.1 482903310 complement(795985..796545) 1 NC_021151.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; spermidine N1-acetyltransferase 796545 1171376000772 STU288_03825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 spermidine N1-acetyltransferase YP_007901870.1 795985 R 1171376 CDS YP_007901871.1 482903311 complement(796581..796922) 1 NC_021151.1 hypothetical protein 796922 1171376000773 STU288_03830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901871.1 796581 R 1171376 CDS YP_007901872.1 482903312 797075..797401 1 NC_021151.1 COG1742 Uncharacterized conserved protein; hypothetical protein 797401 1171376000774 STU288_03835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901872.1 797075 D 1171376 CDS YP_007901873.1 482903313 797523..798737 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase 798737 1171376000775 STU288_03840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional D-altronate/D-mannonate dehydratase YP_007901873.1 797523 D 1171376 CDS YP_007901874.1 482903314 798748..799767 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase 799767 1171376000776 STU288_03845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007901874.1 798748 D 1171376 CDS YP_007901875.1 482903315 801344..802810 1 NC_021151.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 802810 1171376000777 STU288_03860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-mannonate oxidoreductase YP_007901875.1 801344 D 1171376 CDS YP_007901876.1 482903316 complement(802877..803080) 1 NC_021151.1 hypothetical protein 803080 1171376000778 STU288_03865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901876.1 802877 R 1171376 CDS YP_007901877.1 482903317 complement(803261..803947) 1 NC_021151.1 COG1802 Transcriptional regulators; GntR family transcriptional regulator 803947 1171376000779 STU288_03870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007901877.1 803261 R 1171376 CDS YP_007901878.1 482903318 complement(804077..804823) 1 NC_021151.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity; malonic semialdehyde reductase 804823 1171376000780 STU288_03875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 malonic semialdehyde reductase YP_007901878.1 804077 R 1171376 CDS YP_007901879.1 482903319 804962..807004 1 NC_021151.1 COG0339 Zn-dependent oligopeptidases; dipeptidyl carboxypeptidase II 807004 1171376000781 STU288_03880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptidyl carboxypeptidase II YP_007901879.1 804962 D 1171376 CDS YP_007901880.1 482903320 complement(807651..808178) 1 NC_021151.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 808178 1171376000782 STU288_03885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901880.1 807651 R 1171376 CDS YP_007901881.1 482903321 808605..808997 1 NC_021151.1 COG3111 Uncharacterized conserved protein; hypothetical protein 808997 1171376000783 STU288_03890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901881.1 808605 D 1171376 CDS YP_007901882.1 482903322 complement(809346..809441) 1 NC_021151.1 hypothetical protein 809441 1171376000784 STU288_03895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901882.1 809346 R 1171376 CDS YP_007901883.1 482903323 complement(809689..810876) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transporter 810876 1171376000785 STU288_03900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007901883.1 809689 R 1171376 CDS YP_007901884.1 482903324 811107..812006 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; O-acetylserine/cysteine export protein 812006 1171376000786 STU288_03905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-acetylserine/cysteine export protein YP_007901884.1 811107 D 1171376 CDS YP_007901885.1 482903325 complement(812125..812340) 1 NC_021151.1 hypothetical protein 812340 1171376000787 STU288_03910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901885.1 812125 R 1171376 CDS YP_007901886.1 482903326 complement(812369..812752) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator MarA 812752 1171376000788 STU288_03915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator MarA YP_007901886.1 812369 R 1171376 CDS YP_007901887.1 482903327 complement(812772..813206) 1 NC_021151.1 COG1846 Transcriptional regulators; DNA-binding transcriptional repressor MarR 813206 1171376000789 STU288_03920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor MarR YP_007901887.1 812772 R 1171376 CDS YP_007901888.1 482903328 813465..814130 1 NC_021151.1 COG2095 Multiple antibiotic transporter; hypothetical protein 814130 1171376000790 STU288_03925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901888.1 813465 D 1171376 CDS YP_007901889.1 482903329 complement(814177..815367) 1 NC_021151.1 COG2814 Arabinose efflux permease; arabinose transporter 815367 1171376000791 STU288_03930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arabinose transporter YP_007901889.1 814177 R 1171376 CDS YP_007901890.1 482903330 complement(815483..816355) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 816355 1171376000792 STU288_03935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007901890.1 815483 R 1171376 CDS YP_007901891.1 482903331 816458..817846 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase 817846 1171376000793 STU288_03940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate semialdehyde dehydrogenase YP_007901891.1 816458 D 1171376 CDS YP_007901892.1 482903332 817919..818845 1 NC_021151.1 COG2066 Glutaminase; glutaminase 818845 1171376000794 STU288_03945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaminase YP_007901892.1 817919 D 1171376 CDS YP_007901893.1 482903333 818845..819204 1 NC_021151.1 hypothetical protein 819204 1171376000795 STU288_03950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901893.1 818845 D 1171376 CDS YP_007901894.1 482903334 819461..820375 1 NC_021151.1 COG3781 Predicted membrane protein; hypothetical protein 820375 1171376000796 STU288_03955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901894.1 819461 D 1171376 CDS YP_007901895.1 482903335 complement(820431..820973) 1 NC_021151.1 putative outer membrane protein 820973 1171376000797 STU288_03960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007901895.1 820431 R 1171376 CDS YP_007901896.1 482903336 821690..822808 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane protein N 822808 1171376000798 STU288_03965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein N YP_007901896.1 821690 D 1171376 CDS YP_007901897.1 482903337 complement(822949..823290) 1 NC_021151.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase 823290 1171376000799 STU288_03970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase YP_007901897.1 822949 R 1171376 CDS YP_007901898.1 482903338 complement(823303..824190) 1 NC_021151.1 COG0374 Ni,Fe-hydrogenase I large subunit; dehydrogenase 824190 1171376000800 STU288_03975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dehydrogenase YP_007901898.1 823303 R 1171376 CDS YP_007901899.1 482903339 complement(824178..825239) 1 NC_021151.1 COG1773 Rubredoxin; hydrogenase-1 operon protein HyaF2 825239 1171376000801 STU288_03980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase-1 operon protein HyaF2 YP_007901899.1 824178 R 1171376 CDS YP_007901900.1 482903340 complement(825257..825667) 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE2 825667 1171376000802 STU288_03985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase-1 operon protein HyaE2 YP_007901900.1 825257 R 1171376 CDS YP_007901901.1 482903341 complement(825664..825963) 1 NC_021151.1 hydrogenase isoenzymes formation protein 825963 1171376000803 STU288_03990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase isoenzymes formation protein YP_007901901.1 825664 R 1171376 CDS YP_007901902.1 482903342 complement(825963..826571) 1 NC_021151.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 826571 1171376000804 STU288_03995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 1 maturation protease YP_007901902.1 825963 R 1171376 CDS YP_007901903.1 482903343 complement(826577..827320) 1 NC_021151.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase 1 b-type cytochrome subunit HyaC2 827320 1171376000805 STU288_04000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Ni/Fe-hydrogenase 1 b-type cytochrome subunit HyaC2 YP_007901903.1 826577 R 1171376 CDS YP_007901904.1 482903344 complement(827271..829073) 1 NC_021151.1 COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase-1 large subunit 829073 1171376000806 STU288_04005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase-1 large subunit YP_007901904.1 827271 R 1171376 CDS YP_007901905.1 482903345 complement(829076..830179) 1 NC_021151.1 COG1740 Ni,Fe-hydrogenase I small subunit; uptake hydrogenase small subunit 830179 1171376000807 STU288_04010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uptake hydrogenase small subunit YP_007901905.1 829076 R 1171376 CDS YP_007901906.1 482903346 complement(830307..830459) 1 NC_021151.1 hypothetical protein 830459 1171376000808 STU288_04015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901906.1 830307 R 1171376 CDS YP_007901907.1 482903347 830608..831699 1 NC_021151.1 COG3049 Penicillin V acylase and related amidases; putative hydrolase 831699 1171376000809 STU288_04020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative hydrolase YP_007901907.1 830608 D 1171376 CDS YP_007901908.1 482903348 831865..832536 1 NC_021151.1 COG2186 Transcriptional regulators; putative regulatory protein 832536 1171376000810 STU288_04025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007901908.1 831865 D 1171376 CDS YP_007901909.1 482903349 complement(832595..833620) 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc-type alcohol dehydrogenase 833620 1171376000811 STU288_04030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc-type alcohol dehydrogenase YP_007901909.1 832595 R 1171376 CDS YP_007901910.1 482903350 complement(833595..834881) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 834881 1171376000812 STU288_04035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007901910.1 833595 R 1171376 CDS YP_007901911.1 482903351 complement(835058..836548) 1 NC_021151.1 COG4287 PhoPQ-activated pathogenicity-related protein; PhoPQ-regulated protein 836548 1171376000813 STU288_04040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PhoPQ-regulated protein YP_007901911.1 835058 R 1171376 CDS YP_007901912.1 482903352 complement(836684..837925) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux protein 837925 1171376000814 STU288_04045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux protein YP_007901912.1 836684 R 1171376 CDS YP_007901913.1 482903353 complement(837915..839423) 1 NC_021151.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; hypothetical protein 839423 1171376000815 STU288_04050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901913.1 837915 R 1171376 CDS YP_007901914.1 482903354 839468..839956 1 NC_021151.1 COG1846 Transcriptional regulators; regulatory protein 839956 1171376000816 STU288_04055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007901914.1 839468 D 1171376 CDS YP_007901915.1 482903355 840149..841228 1 NC_021151.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); isomerase 841228 1171376000817 STU288_04060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isomerase YP_007901915.1 840149 D 1171376 CDS YP_007901916.1 482903356 complement(841280..841669) 1 NC_021151.1 COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein 841669 1171376000818 STU288_04065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901916.1 841280 R 1171376 CDS YP_007901917.1 482903357 complement(841840..842124) 1 NC_021151.1 COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; RelE protein 842124 1171376000819 STU288_04070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RelE protein YP_007901917.1 841840 R 1171376 CDS YP_007901918.1 482903358 complement(842114..842362) 1 NC_021151.1 COG2161 Antitoxin of toxin-antitoxin stability system; RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) 842362 1171376000820 STU288_04075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) YP_007901918.1 842114 R 1171376 CDS YP_007901919.1 482903359 842514..842729 1 NC_021151.1 putative phage secreted protein 842729 1171376000821 STU288_04080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage secreted protein YP_007901919.1 842514 D 1171376 CDS YP_007901920.1 482903360 842719..843051 1 NC_021151.1 hypothetical protein 843051 1171376000822 STU288_04085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901920.1 842719 D 1171376 CDS YP_007901921.1 482903361 843173..844102 1 NC_021151.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); putative cytoplasmic protein 844102 1171376000823 STU288_04090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901921.1 843173 D 1171376 CDS YP_007901922.1 482903362 844155..844547 1 NC_021151.1 hypothetical protein 844547 1171376000824 STU288_04095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901922.1 844155 D 1171376 CDS YP_007901923.1 482903363 complement(844510..844872) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; putative transposase 844872 1171376000825 STU288_04100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase YP_007901923.1 844510 R 1171376 CDS YP_007901924.1 482903364 complement(845191..845301) 1 NC_021151.1 hypothetical protein 845301 1171376000826 STU288_04105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901924.1 845191 R 1171376 CDS YP_007901925.1 482903365 complement(845680..847143) 1 NC_021151.1 hypothetical protein 847143 1171376000827 STU288_04110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901925.1 845680 R 1171376 CDS YP_007901926.1 482903366 847405..848412 1 NC_021151.1 COG1609 Transcriptional regulators; LacI family transcriptional regulator 848412 1171376000828 STU288_04115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LacI family transcriptional regulator YP_007901926.1 847405 D 1171376 CDS YP_007901927.1 482903367 848556..850007 1 NC_021151.1 COG1757 Na+/H+ antiporter; Na+/H+ antiporter NhaC 850007 1171376000829 STU288_04120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Na+/H+ antiporter NhaC YP_007901927.1 848556 D 1171376 CDS YP_007901928.1 482903368 850020..851222 1 NC_021151.1 COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase 851222 1171376000830 STU288_04125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminotransferase YP_007901928.1 850020 D 1171376 CDS YP_007901929.1 482903369 complement(851335..853410) 1 NC_021151.1 COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; putative glycosyl hydrolase 853410 1171376000831 STU288_04130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycosyl hydrolase YP_007901929.1 851335 R 1171376 CDS YP_007901930.1 482903370 complement(853467..855995) 1 NC_021151.1 COG3280 Maltooligosyl trehalose synthase; hydrolase 855995 1171376000832 STU288_04135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007901930.1 853467 R 1171376 CDS YP_007901931.1 482903371 complement(855992..857776) 1 NC_021151.1 COG0296 1,4-alpha-glucan branching enzyme; 3-oxoacyl-ACP synthase 857776 1171376000833 STU288_04140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-oxoacyl-ACP synthase YP_007901931.1 855992 R 1171376 CDS YP_007901932.1 482903372 complement(857905..858690) 1 NC_021151.1 hypothetical protein 858690 1171376000834 STU288_04145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901932.1 857905 R 1171376 CDS YP_007901933.1 482903373 complement(858833..859162) 1 NC_021151.1 acid-resistance protein 859162 hdeB 1171376000835 hdeB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acid-resistance protein YP_007901933.1 858833 R 1171376 CDS YP_007901934.1 482903374 complement(859512..859943) 1 NC_021151.1 COG1764 Predicted redox protein, regulator of disulfide bond formation; peroxiredoxin OsmC 859943 1171376000836 STU288_04155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peroxiredoxin OsmC YP_007901934.1 859512 R 1171376 CDS YP_007901935.1 482903375 860456..860671 1 NC_021151.1 biofilm-dependent modulation protein 860671 1171376000837 STU288_04160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biofilm-dependent modulation protein YP_007901935.1 860456 D 1171376 CDS YP_007901936.1 482903376 860766..860909 1 NC_021151.1 30S ribosomal subunit S22 860909 rpsV 1171376000838 rpsV Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal subunit S22 YP_007901936.1 860766 D 1171376 CDS YP_007901937.1 482903377 complement(860807..860938) 1 NC_021151.1 hypothetical protein 860938 1171376000839 STU288_04170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901937.1 860807 R 1171376 CDS YP_007901938.1 482903378 861086..862783 1 NC_021151.1 COG0281 Malic enzyme; malate dehydrogenase 862783 1171376000840 STU288_04175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 malate dehydrogenase YP_007901938.1 861086 D 1171376 CDS YP_007901939.1 482903379 863069..864079 1 NC_021151.1 COG1064 Zn-dependent alcohol dehydrogenases; ethanol-active dehydrogenase/acetaldehyde-active reductase 864079 1171376000841 STU288_04180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanol-active dehydrogenase/acetaldehyde-active reductase YP_007901939.1 863069 D 1171376 CDS YP_007901940.1 482903380 complement(864170..864826) 1 NC_021151.1 COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-N subunit gamma 864826 1171376000842 STU288_04185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase-N subunit gamma YP_007901940.1 864170 R 1171376 CDS YP_007901941.1 482903381 complement(864819..865703) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-N subunit beta 865703 1171376000843 STU288_04190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase-N subunit beta YP_007901941.1 864819 R 1171376 CDS YP_007901942.1 482903382 869042..869923 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; aromatic amino acid exporter 869923 1171376000844 STU288_04205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aromatic amino acid exporter YP_007901942.1 869042 D 1171376 CDS YP_007901943.1 482903383 870448..871536 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane protein 871536 1171376000845 STU288_04210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein YP_007901943.1 870448 D 1171376 CDS YP_007901944.1 482903384 871620..872060 1 NC_021151.1 COG3791 Uncharacterized conserved protein; hypothetical protein 872060 1171376000846 STU288_04215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901944.1 871620 D 1171376 CDS YP_007901945.1 482903385 complement(872085..873572) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; methyl viologen resistance protein SmvA 873572 1171376000847 STU288_04220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl viologen resistance protein SmvA YP_007901945.1 872085 R 1171376 CDS YP_007901946.1 482903386 873690..874268 1 NC_021151.1 COG1309 Transcriptional regulator; TetR family transcriptional regulator 874268 1171376000848 STU288_04225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TetR family transcriptional regulator YP_007901946.1 873690 D 1171376 CDS YP_007901947.1 482903387 874483..875871 1 NC_021151.1 COG2223 Nitrate/nitrite transporter; nitrate/nitrite transport protein NarU 875871 1171376000849 STU288_04230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate/nitrite transport protein NarU YP_007901947.1 874483 D 1171376 CDS YP_007901948.1 482903388 875963..879703 1 NC_021151.1 COG5013 Nitrate reductase alpha subunit; nitrate reductase Z subunit alpha 879703 narZ 1171376000850 narZ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase Z subunit alpha YP_007901948.1 875963 D 1171376 CDS YP_007901949.1 482903389 879700..881244 1 NC_021151.1 COG1140 Nitrate reductase beta subunit; nitrate reductase Z subunit beta 881244 narY 1171376000851 narY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase Z subunit beta YP_007901949.1 879700 D 1171376 CDS YP_007901950.1 482903390 881244..881939 1 NC_021151.1 COG2180 Nitrate reductase delta subunit; nitrate reductase 2 subunit delta 881939 1171376000852 STU288_04245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase 2 subunit delta YP_007901950.1 881244 D 1171376 CDS YP_007901951.1 482903391 881936..882616 1 NC_021151.1 COG2181 Nitrate reductase gamma subunit; nitrate reductase 2 subunit gamma 882616 1171376000853 STU288_04250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase 2 subunit gamma YP_007901951.1 881936 D 1171376 CDS YP_007901952.1 482903392 882722..883615 1 NC_021151.1 COG0384 Predicted epimerase, PhzC/PhzF homolog; hypothetical protein 883615 1171376000854 STU288_04255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901952.1 882722 D 1171376 CDS YP_007901953.1 482903393 complement(883651..884496) 1 NC_021151.1 COG2162 Arylamine N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 884496 1171376000855 STU288_04260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-hydroxyarylamine O-acetyltransferase YP_007901953.1 883651 R 1171376 CDS YP_007901954.1 482903394 complement(884780..885412) 1 NC_021151.1 hypothetical protein 885412 1171376000856 STU288_04265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901954.1 884780 R 1171376 CDS YP_007901955.1 482903395 885925..887418 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; L-asparagine permease 887418 1171376000857 STU288_04270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-asparagine permease YP_007901955.1 885925 D 1171376 CDS YP_007901956.1 482903396 complement(887495..887716) 1 NC_021151.1 putative lipoprotein ygdR Flags: Precursor 887716 1171376000858 STU288_04275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein ygdR Flags: Precursor YP_007901956.1 887495 R 1171376 CDS YP_007901957.1 482903397 complement(887861..888922) 1 NC_021151.1 COG3391 Uncharacterized conserved protein; ATP-binding protein 888922 1171376000859 STU288_04280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-binding protein YP_007901957.1 887861 R 1171376 CDS YP_007901958.1 482903398 889186..891306 1 NC_021151.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; putative outer membrane receptor 891306 1171376000860 STU288_04285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane receptor YP_007901958.1 889186 D 1171376 CDS YP_007901959.1 482903399 complement(891373..892038) 1 NC_021151.1 COG1802 Transcriptional regulators; colanic acid/biofilm transcriptional regulator 892038 1171376000861 STU288_04290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid/biofilm transcriptional regulator YP_007901959.1 891373 R 1171376 CDS YP_007901960.1 482903400 complement(892372..893409) 1 NC_021151.1 COG2130 Putative NADP-dependent oxidoreductases; NADP-dependent oxidoreductase 893409 1171376000862 STU288_04295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADP-dependent oxidoreductase YP_007901960.1 892372 R 1171376 CDS YP_007901961.1 482903401 893621..894136 1 NC_021151.1 COG1247 Sortase and related acyltransferases; acetyltransferase 894136 1171376000863 STU288_04300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007901961.1 893621 D 1171376 CDS YP_007901962.1 482903402 894136..894585 1 NC_021151.1 COG3238 Uncharacterized protein conserved in bacteria; Inner membrane protein ydcZ 894585 1171376000864 STU288_04305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein ydcZ YP_007901962.1 894136 D 1171376 CDS YP_007901963.1 482903403 complement(894590..894823) 1 NC_021151.1 hypothetical protein 894823 1171376000865 STU288_04310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901963.1 894590 R 1171376 CDS YP_007901964.1 482903404 895047..896366 1 NC_021151.1 putative virulence protein 896366 1171376000866 STU288_04315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative virulence protein YP_007901964.1 895047 D 1171376 CDS YP_007901965.1 482903405 896371..899352 1 NC_021151.1 COG4457 Uncharacterized protein conserved in bacteria, putative virulence factor; putative virulence protein 899352 1171376000867 STU288_04320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative virulence protein YP_007901965.1 896371 D 1171376 CDS YP_007901966.1 482903406 899349..901493 1 NC_021151.1 COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor; virulence effector protein 901493 1171376000868 STU288_04325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 virulence effector protein YP_007901966.1 899349 D 1171376 CDS YP_007901967.1 482903407 complement(901538..901711) 1 NC_021151.1 inner membrane protein 901711 1171376000869 STU288_04330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007901967.1 901538 R 1171376 CDS YP_007901968.1 482903408 complement(902110..903534) 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; gamma-aminobutyraldehyde dehydrogenase 903534 1171376000870 STU288_04335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-aminobutyraldehyde dehydrogenase YP_007901968.1 902110 R 1171376 CDS YP_007901969.1 482903409 complement(903670..905094) 1 NC_021151.1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; classes I and II superfamily aminotransferase 905094 1171376000871 STU288_04340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 classes I and II superfamily aminotransferase YP_007901969.1 903670 R 1171376 CDS YP_007901970.1 482903410 complement(905230..906000) 1 NC_021151.1 COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase 906000 1171376000872 STU288_04345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine dipeptidase YP_007901970.1 905230 R 1171376 CDS YP_007901971.1 482903411 complement(906522..906920) 1 NC_021151.1 hypothetical protein 906920 1171376000873 STU288_04350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901971.1 906522 R 1171376 CDS YP_007901972.1 482903412 907457..908407 1 NC_021151.1 secreted effector protein SifB 908407 sifB 1171376000874 sifB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted effector protein SifB YP_007901972.1 907457 D 1171376 CDS YP_007901973.1 482903413 908681..908911 1 NC_021151.1 hypothetical protein 908911 1171376000875 STU288_04360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901973.1 908681 D 1171376 CDS YP_007901974.1 482903414 complement(908912..910876) 1 NC_021151.1 COG0826 Collagenase and related proteases; putative peptidase 910876 1171376000876 STU288_04365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative peptidase YP_007901974.1 908912 R 1171376 CDS YP_007901975.1 482903415 complement(910955..911491) 1 NC_021151.1 COG1396 Predicted transcriptional regulators; DNA-binding protein 911491 1171376000877 STU288_04370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding protein YP_007901975.1 910955 R 1171376 CDS YP_007901976.1 482903416 911582..912760 1 NC_021151.1 COG3135 Uncharacterized protein involved in benzoate metabolism; benzoate membrane transport protein 912760 1171376000878 STU288_04375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 benzoate membrane transport protein YP_007901976.1 911582 D 1171376 CDS YP_007901977.1 482903417 complement(912814..913482) 1 NC_021151.1 putative lipoprotein ydcL Flags: Precursor 913482 1171376000879 STU288_04380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein ydcL Flags: Precursor YP_007901977.1 912814 R 1171376 CDS YP_007901978.1 482903418 complement(913638..914234) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; tellurite resistance protein TehB 914234 1171376000880 STU288_04385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tellurite resistance protein TehB YP_007901978.1 913638 R 1171376 CDS YP_007901979.1 482903419 complement(914221..915234) 1 NC_021151.1 COG1275 Tellurite resistance protein and related permeases; potassium-tellurite ethidium and proflavin transporter 915234 1171376000881 STU288_04390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium-tellurite ethidium and proflavin transporter YP_007901979.1 914221 R 1171376 CDS YP_007901980.1 482903420 915341..916321 1 NC_021151.1 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); transferase 916321 1171376000882 STU288_04395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transferase YP_007901980.1 915341 D 1171376 CDS YP_007901981.1 482903421 complement(916318..916857) 1 NC_021151.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-L7/L12-serine acetyltransferase 916857 1171376000883 STU288_04400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal-protein-L7/L12-serine acetyltransferase YP_007901981.1 916318 R 1171376 CDS YP_007901982.1 482903422 917074..918192 1 NC_021151.1 COG1363 Cellulase M and related proteins; hypothetical protein 918192 1171376000884 STU288_04405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901982.1 917074 D 1171376 CDS YP_007901983.1 482903423 918189..918470 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; putative phosphotransferase enzyme 918470 1171376000885 STU288_04410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phosphotransferase enzyme YP_007901983.1 918189 D 1171376 CDS YP_007901984.1 482903424 918481..919794 1 NC_021151.1 COG3775 Phosphotransferase system, galactitol-specific IIC component; putative phosphotransferase enzyme 919794 1171376000886 STU288_04415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phosphotransferase enzyme YP_007901984.1 918481 D 1171376 CDS YP_007901985.1 482903425 919808..920614 1 NC_021151.1 COG0434 Predicted TIM-barrel enzyme; Putative nucleoside triphosphatase 920614 1171376000887 STU288_04420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative nucleoside triphosphatase YP_007901985.1 919808 D 1171376 CDS YP_007901986.1 482903426 920746..921183 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); putative phosphotransferase enzyme 921183 1171376000888 STU288_04425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phosphotransferase enzyme YP_007901986.1 920746 D 1171376 CDS YP_007901987.1 482903427 921195..921827 1 NC_021151.1 COG0036 Pentose-5-phosphate-3-epimerase; epimerase 921827 1171376000889 STU288_04430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 epimerase YP_007901987.1 921195 D 1171376 CDS YP_007901988.1 482903428 921843..922634 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; putative sgc region transcriptional regulator 922634 1171376000890 STU288_04435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sgc region transcriptional regulator YP_007901988.1 921843 D 1171376 CDS YP_007901989.1 482903429 922634..923071 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoglycoside 6'-N-acetyltransferase 923071 1171376000891 STU288_04440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoglycoside 6'-N-acetyltransferase YP_007901989.1 922634 D 1171376 CDS YP_007901990.1 482903430 complement(923118..924320) 1 NC_021151.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate oxidase 924320 1171376000892 STU288_04445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-lactate oxidase YP_007901990.1 923118 R 1171376 CDS YP_007901991.1 482903431 complement(924332..924907) 1 NC_021151.1 COG2353 Uncharacterized conserved protein; hypothetical protein 924907 1171376000893 STU288_04450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901991.1 924332 R 1171376 CDS YP_007901992.1 482903432 complement(925103..926758) 1 NC_021151.1 COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein D 926758 mdoD 1171376000894 mdoD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucan biosynthesis protein D YP_007901992.1 925103 R 1171376 CDS YP_007901993.1 482903433 complement(926978..928486) 1 NC_021151.1 COG2272 Carboxylesterase type B; esterase 928486 1171376000895 STU288_04460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 esterase YP_007901993.1 926978 R 1171376 CDS YP_007901994.1 482903434 complement(928535..929878) 1 NC_021151.1 COG5383 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 929878 1171376000896 STU288_04465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007901994.1 928535 R 1171376 CDS YP_007901995.1 482903435 930171..931094 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 931094 1171376000897 STU288_04470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007901995.1 930171 D 1171376 CDS YP_007901996.1 482903436 complement(931155..932780) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein III 932780 1171376000898 STU288_04475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-accepting chemotaxis protein III YP_007901996.1 931155 R 1171376 CDS YP_007901997.1 482903437 complement(932949..934067) 1 NC_021151.1 COG1062 Zn-dependent alcohol dehydrogenases, class III; S-(hydroxymethyl)glutathione dehydrogenase 934067 1171376000899 STU288_04480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-(hydroxymethyl)glutathione dehydrogenase YP_007901997.1 932949 R 1171376 CDS YP_007901998.1 482903438 complement(934099..934374) 1 NC_021151.1 COG1937 Uncharacterized protein conserved in bacteria; Transcriptional repressor frmR 934374 1171376000900 STU288_04485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transcriptional repressor frmR YP_007901998.1 934099 R 1171376 CDS YP_007901999.1 482903439 complement(935137..935262) 1 NC_021151.1 hypothetical protein 935262 1171376000901 STU288_04490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007901999.1 935137 R 1171376 CDS YP_007902000.1 482903440 complement(935427..936143) 1 NC_021151.1 hypothetical protein 936143 1171376000902 STU288_04495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902000.1 935427 R 1171376 CDS YP_007902001.1 482903441 936569..937795 1 NC_021151.1 COG3240 Phospholipase/lecithinase/hemolysin; pathogenicity island 2 effector protein SseJ 937795 1171376000903 STU288_04500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 2 effector protein SseJ YP_007902001.1 936569 D 1171376 CDS YP_007902002.1 482903442 complement(937916..938260) 1 NC_021151.1 COG3326 Predicted membrane protein; Putative inner membrane protein 938260 1171376000904 STU288_04505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative inner membrane protein YP_007902002.1 937916 R 1171376 CDS YP_007902003.1 482903443 939167..939928 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; periplasmic binding protein 939928 1171376000905 STU288_04510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic binding protein YP_007902003.1 939167 D 1171376 CDS YP_007902004.1 482903444 939935..940582 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 940582 1171376000906 STU288_04515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid ABC transporter permease YP_007902004.1 939935 D 1171376 CDS YP_007902005.1 482903445 940607..941338 1 NC_021151.1 COG1126 ABC-type polar amino acid transport system, ATPase component; ABC transporter ATP-binding protein 941338 1171376000907 STU288_04520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007902005.1 940607 D 1171376 CDS YP_007902006.1 482903446 941335..942015 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; ABC-type transport system membrane component 942015 1171376000908 STU288_04525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC-type transport system membrane component YP_007902006.1 941335 D 1171376 CDS YP_007902007.1 482903447 942152..943702 1 NC_021151.1 COG5305 Predicted membrane protein; hypothetical protein 943702 1171376000909 STU288_04530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902007.1 942152 D 1171376 CDS YP_007902008.1 482903448 complement(943703..943798) 1 NC_021151.1 hypothetical protein 943798 1171376000910 STU288_04535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902008.1 943703 R 1171376 CDS YP_007902009.1 482903449 944166..944828 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; methyltransferase 944828 1171376000911 STU288_04540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyltransferase YP_007902009.1 944166 D 1171376 CDS YP_007902010.1 482903450 complement(945099..945629) 1 NC_021151.1 COG3038 Cytochrome B561; cytochrome b561 945629 1171376000912 STU288_04545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome b561 YP_007902010.1 945099 R 1171376 CDS YP_007902011.1 482903451 complement(945746..946546) 1 NC_021151.1 COG1434 Uncharacterized conserved protein; Protein possibly involved in murein 946546 1171376000913 STU288_04550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein possibly involved in murein YP_007902011.1 945746 R 1171376 CDS YP_007902012.1 482903452 complement(946610..950455) 1 NC_021151.1 COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpA 950455 1171376000914 STU288_04555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase HrpA YP_007902012.1 946610 R 1171376 CDS YP_007902013.1 482903453 950713..951318 1 NC_021151.1 COG1182 Acyl carrier protein phosphodiesterase; azoreductase 951318 1171376000915 STU288_04560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 azoreductase YP_007902013.1 950713 D 1171376 CDS YP_007902014.1 482903454 complement(951315..951764) 1 NC_021151.1 COG3791 Uncharacterized conserved protein; putative inner membrane protein 951764 1171376000916 STU288_04565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902014.1 951315 R 1171376 CDS YP_007902015.1 482903455 complement(951907..952230) 1 NC_021151.1 COG3784 Uncharacterized protein conserved in bacteria; hypothetical protein 952230 1171376000917 STU288_04570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902015.1 951907 R 1171376 CDS YP_007902016.1 482903456 complement(952238..952423) 1 NC_021151.1 hypothetical protein 952423 1171376000918 STU288_04575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902016.1 952238 R 1171376 CDS YP_007902017.1 482903457 complement(952429..955065) 1 NC_021151.1 hypothetical protein 955065 1171376000919 STU288_04580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902017.1 952429 R 1171376 CDS YP_007902018.1 482903458 955305..956294 1 NC_021151.1 COG1052 Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 956294 1171376000920 STU288_04585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-lactate dehydrogenase YP_007902018.1 955305 D 1171376 CDS YP_007902019.1 482903459 956405..956815 1 NC_021151.1 COG3187 Heat shock protein; heat-inducible protein 956815 1171376000921 STU288_04590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat-inducible protein YP_007902019.1 956405 D 1171376 CDS YP_007902020.1 482903460 complement(956859..957125) 1 NC_021151.1 COG3042 Putative hemolysin; putative cytoplasmic protein 957125 1171376000922 STU288_04595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902020.1 956859 R 1171376 CDS YP_007902021.1 482903461 957401..960925 1 NC_021151.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate-flavodoxin oxidoreductase 960925 1171376000923 STU288_04600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate-flavodoxin oxidoreductase YP_007902021.1 957401 D 1171376 CDS YP_007902022.1 482903462 complement(960984..961193) 1 NC_021151.1 hypothetical protein 961193 1171376000924 STU288_04605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902022.1 960984 R 1171376 CDS YP_007902023.1 482903463 961407..961841 1 NC_021151.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein F 961841 1171376000925 STU288_04610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress protein F YP_007902023.1 961407 D 1171376 CDS YP_007902024.1 482903464 complement(961891..962229) 1 NC_021151.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug transporter 962229 1171376000926 STU288_04615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug transporter YP_007902024.1 961891 R 1171376 CDS YP_007902025.1 482903465 complement(962222..962374) 1 NC_021151.1 hypothetical protein 962374 1171376000927 STU288_04620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902025.1 962222 R 1171376 CDS YP_007902026.1 482903466 962393..962533 1 NC_021151.1 COG0582 Integrase; phage integrase 962533 1171376000928 STU288_04625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage integrase YP_007902026.1 962393 D 1171376 CDS YP_007902027.1 482903467 962585..963520 1 NC_021151.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA 2-thiocytidine biosynthesis protein TtcA 963520 1171376000929 STU288_04630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA 2-thiocytidine biosynthesis protein TtcA YP_007902027.1 962585 D 1171376 CDS YP_007902028.1 482903468 complement(963564..964937) 1 NC_021151.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DbpA 964937 1171376000930 STU288_04635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase DbpA YP_007902028.1 963564 R 1171376 CDS YP_007902029.1 482903469 complement(964966..965148) 1 NC_021151.1 hypothetical protein 965148 1171376000931 STU288_04640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902029.1 964966 R 1171376 CDS YP_007902030.1 482903470 complement(965321..965464) 1 NC_021151.1 hypothetical protein 965464 1171376000932 STU288_04645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902030.1 965321 R 1171376 CDS YP_007902031.1 482903471 complement(965424..966407) 1 NC_021151.1 COG0598 Mg2+ and Co2+ transporters; zinc transporter 966407 zntB 1171376000933 zntB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc transporter YP_007902031.1 965424 R 1171376 CDS YP_007902032.1 482903472 complement(966553..967707) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 967707 1171376000934 STU288_04655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-accepting chemotaxis protein YP_007902032.1 966553 R 1171376 CDS YP_007902033.1 482903473 complement(968118..968681) 1 NC_021151.1 COG2840 Uncharacterized protein conserved in bacteria; UPF0115 protein yfcN 968681 1171376000935 STU288_04660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0115 protein yfcN YP_007902033.1 968118 R 1171376 CDS YP_007902034.1 482903474 968939..969454 1 NC_021151.1 COG0350 Methylated DNA-protein cysteine methyltransferase; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 969454 1171376000936 STU288_04665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_007902034.1 968939 D 1171376 CDS YP_007902035.1 482903475 969650..970402 1 NC_021151.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; fumarate/nitrate reduction transcriptional regulator 970402 1171376000937 STU288_04670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate/nitrate reduction transcriptional regulator YP_007902035.1 969650 D 1171376 CDS YP_007902036.1 482903476 970553..971500 1 NC_021151.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspE 971500 1171376000938 STU288_04675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress protein UspE YP_007902036.1 970553 D 1171376 CDS YP_007902037.1 482903477 complement(971555..971809) 1 NC_021151.1 hypothetical protein 971809 1171376000939 STU288_04680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902037.1 971555 R 1171376 CDS YP_007902038.1 482903478 972048..973079 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; MscS family inner membrane protein YnaI 973079 1171376000940 STU288_04685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MscS family inner membrane protein YnaI YP_007902038.1 972048 D 1171376 CDS YP_007902039.1 482903479 complement(973165..973767) 1 NC_021151.1 COG1396 Predicted transcriptional regulators; DNA-binding protein 973767 1171376000941 STU288_04690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding protein YP_007902039.1 973165 R 1171376 CDS YP_007902040.1 482903480 973811..974497 1 NC_021151.1 COG3382 Uncharacterized conserved protein; putative cytoplasmic protein 974497 1171376000942 STU288_04695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902040.1 973811 D 1171376 CDS YP_007902041.1 482903481 complement(974969..975526) 1 NC_021151.1 COG2077 Peroxiredoxin; thiol peroxidase 975526 1171376000943 STU288_04710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiol peroxidase YP_007902041.1 974969 R 1171376 CDS YP_007902042.1 482903482 complement(975625..976449) 1 NC_021151.1 hypothetical protein 976449 1171376000944 STU288_04715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902042.1 975625 R 1171376 CDS YP_007902043.1 482903483 complement(976476..978458) 1 NC_021151.1 invasin-like protein 978458 1171376000945 STU288_04720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasin-like protein YP_007902043.1 976476 R 1171376 CDS YP_007902044.1 482903484 complement(978533..979378) 1 NC_021151.1 putative lipoprotein 979378 1171376000946 STU288_04725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein YP_007902044.1 978533 R 1171376 CDS YP_007902045.1 482903485 979678..980529 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; regulatory protein 980529 1171376000947 STU288_04730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007902045.1 979678 D 1171376 CDS YP_007902046.1 482903486 980920..982029 1 NC_021151.1 hypothetical protein 982029 1171376000948 STU288_04735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902046.1 980920 D 1171376 CDS YP_007902047.1 482903487 complement(982243..982479) 1 NC_021151.1 putative outer membrane lipoprotein 982479 1171376000949 STU288_04740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane lipoprotein YP_007902047.1 982243 R 1171376 CDS YP_007902048.1 482903488 complement(982608..983198) 1 NC_021151.1 COG1309 Transcriptional regulator; TetR family transcriptional regulator 983198 1171376000950 STU288_04745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TetR family transcriptional regulator YP_007902048.1 982608 R 1171376 CDS YP_007902049.1 482903489 983276..983989 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 983989 1171376000951 STU288_04750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007902049.1 983276 D 1171376 CDS YP_007902050.1 482903490 complement(984080..984949) 1 NC_021151.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 984949 1171376000952 STU288_04755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007902050.1 984080 R 1171376 CDS YP_007902051.1 482903491 complement(985223..986128) 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional regulator 986128 1171376000953 STU288_04760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007902051.1 985223 R 1171376 CDS YP_007902052.1 482903492 986247..987176 1 NC_021151.1 oxidoreductase 987176 1171376000954 STU288_04765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007902052.1 986247 D 1171376 CDS YP_007902053.1 482903493 complement(987273..988886) 1 NC_021151.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; murein tripeptide ABC transporter periplasmic substrate-binding protein 988886 1171376000955 STU288_04770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein tripeptide ABC transporter periplasmic substrate-binding protein YP_007902053.1 987273 R 1171376 CDS YP_007902054.1 482903494 989076..989804 1 NC_021151.1 COG3608 Predicted deacylase; murein peptide amidase A 989804 1171376000956 STU288_04775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein peptide amidase A YP_007902054.1 989076 D 1171376 CDS YP_007902055.1 482903495 complement(989779..990744) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-Ala-D/L-Glu epimerase 990744 1171376000957 STU288_04780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-Ala-D/L-Glu epimerase YP_007902055.1 989779 R 1171376 CDS YP_007902056.1 482903496 990860..991366 1 NC_021151.1 COG2077 Peroxiredoxin; lipid hydroperoxide peroxidase 991366 tpx 1171376000958 tpx Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid hydroperoxide peroxidase YP_007902056.1 990860 D 1171376 CDS YP_007902057.1 482903497 complement(991456..992997) 1 NC_021151.1 COG3283 Transcriptional regulator of aromatic amino acids metabolism; DNA-binding transcriptional regulator TyrR 992997 1171376000959 STU288_04790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator TyrR YP_007902057.1 991456 R 1171376 CDS YP_007902058.1 482903498 complement(993145..994206) 1 NC_021151.1 COG3768 Predicted membrane protein; hypothetical protein 994206 1171376000960 STU288_04795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902058.1 993145 R 1171376 CDS YP_007902059.1 482903499 complement(994203..995600) 1 NC_021151.1 COG3106 Predicted ATPase; hypothetical protein 995600 1171376000961 STU288_04800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902059.1 994203 R 1171376 CDS YP_007902060.1 482903500 complement(995749..996063) 1 NC_021151.1 COG0607 Rhodanese-related sulfurtransferase; thiosulfate:cyanide sulfurtransferase 996063 1171376000962 STU288_04805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiosulfate:cyanide sulfurtransferase YP_007902060.1 995749 R 1171376 CDS YP_007902061.1 482903501 complement(996139..996357) 1 NC_021151.1 peripheral inner membrane phage-shock protein 996357 1171376000963 STU288_04810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peripheral inner membrane phage-shock protein YP_007902061.1 996139 R 1171376 CDS YP_007902062.1 482903502 complement(996380..996739) 1 NC_021151.1 COG1983 Putative stress-responsive transcriptional regulator; DNA-binding transcriptional activator PspC 996739 1171376000964 STU288_04815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator PspC YP_007902062.1 996380 R 1171376 CDS YP_007902063.1 482903503 complement(996739..996963) 1 NC_021151.1 phage shock protein B 996963 pspB 1171376000965 pspB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage shock protein B YP_007902063.1 996739 R 1171376 CDS YP_007902064.1 482903504 complement(997023..997691) 1 NC_021151.1 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein PspA 997691 1171376000966 STU288_04825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage shock protein PspA YP_007902064.1 997023 R 1171376 CDS YP_007902065.1 482903505 997862..998842 1 NC_021151.1 COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; phage shock protein operon transcriptional activator 998842 pspF 1171376000967 pspF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage shock protein operon transcriptional activator YP_007902065.1 997862 D 1171376 CDS YP_007902066.1 482903506 998954..1000603 1 NC_021151.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; antimicrobial peptide ABC transporter periplasmic binding protein SapA 1000603 1171376000968 STU288_04835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial peptide ABC transporter periplasmic binding protein SapA YP_007902066.1 998954 D 1171376 CDS YP_007902067.1 482903507 1000600..1001565 1 NC_021151.1 COG4168 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapB 1001565 1171376000969 STU288_04840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial peptide ABC transporter permease SapB YP_007902067.1 1000600 D 1171376 CDS YP_007902068.1 482903508 1001552..1002442 1 NC_021151.1 COG4171 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapC 1002442 1171376000970 STU288_04845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial peptide ABC transporter permease SapC YP_007902068.1 1001552 D 1171376 CDS YP_007902069.1 482903509 1002442..1003434 1 NC_021151.1 COG4170 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC transporter ATP-binding protein 1003434 1171376000971 STU288_04850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial peptide ABC transporter ATP-binding protein YP_007902069.1 1002442 D 1171376 CDS YP_007902070.1 482903510 1003436..1004242 1 NC_021151.1 COG4167 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC system ATP-binding protein SapF 1004242 1171376000972 STU288_04855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial peptide ABC system ATP-binding protein SapF YP_007902070.1 1003436 D 1171376 CDS YP_007902071.1 482903511 complement(1004371..1004967) 1 NC_021151.1 COG2200 FOG: EAL domain; hypothetical protein 1004967 1171376000973 STU288_04860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902071.1 1004371 R 1171376 CDS YP_007902072.1 482903512 complement(1005433..1006410) 1 NC_021151.1 hypothetical protein 1006410 1171376000974 STU288_04865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902072.1 1005433 R 1171376 CDS YP_007902073.1 482903513 1007412..1008200 1 NC_021151.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl carrier protein) reductase 1008200 1171376000975 STU288_04870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enoyl-(acyl carrier protein) reductase YP_007902073.1 1007412 D 1171376 CDS YP_007902074.1 482903514 1008400..1009380 1 NC_021151.1 COG4950 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 1009380 1171376000976 STU288_04875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902074.1 1008400 D 1171376 CDS YP_007902075.1 482903515 1009622..1011556 1 NC_021151.1 COG4776 Exoribonuclease II; exoribonuclease II 1011556 1171376000977 STU288_04880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exoribonuclease II YP_007902075.1 1009622 D 1171376 CDS YP_007902076.1 482903516 1011818..1013800 1 NC_021151.1 COG2199 FOG: GGDEF domain; RNase II stability modulator 1013800 1171376000978 STU288_04885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNase II stability modulator YP_007902076.1 1011818 D 1171376 CDS YP_007902077.1 482903517 1013922..1014101 1 NC_021151.1 hypothetical protein 1014101 1171376000979 STU288_04890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902077.1 1013922 D 1171376 CDS YP_007902078.1 482903518 1014188..1014940 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 1014940 1171376000980 STU288_04895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DeoR family transcriptional regulator YP_007902078.1 1014188 D 1171376 CDS YP_007902079.1 482903519 1015199..1015417 1 NC_021151.1 lipoprotein 1015417 1171376000981 STU288_04900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902079.1 1015199 D 1171376 CDS YP_007902080.1 482903520 complement(1015537..1015863) 1 NC_021151.1 COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins; translation initiation factor Sui1 1015863 1171376000982 STU288_04905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translation initiation factor Sui1 YP_007902080.1 1015537 R 1171376 CDS YP_007902081.1 482903521 complement(1015863..1016600) 1 NC_021151.1 COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1016600 1171376000983 STU288_04910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 orotidine 5'-phosphate decarboxylase YP_007902081.1 1015863 R 1171376 CDS YP_007902082.1 482903522 complement(1016791..1017960) 1 NC_021151.1 COG2956 Predicted N-acetylglucosaminyl transferase; tetratricopeptide repeat protein 1017960 1171376000984 STU288_04915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetratricopeptide repeat protein YP_007902082.1 1016791 R 1171376 CDS YP_007902083.1 482903523 complement(1017967..1018275) 1 NC_021151.1 COG3771 Predicted membrane protein; inner membrane protein 1018275 1171376000985 STU288_04920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007902083.1 1017967 R 1171376 CDS YP_007902084.1 482903524 complement(1018425..1019189) 1 NC_021151.1 COG0671 Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 1019189 1171376000986 STU288_04925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatidylglycerophosphatase B YP_007902084.1 1018425 R 1171376 CDS YP_007902085.1 482903525 1019385..1019975 1 NC_021151.1 COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 1019975 ribA 1171376000987 ribA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP cyclohydrolase II YP_007902085.1 1019385 D 1171376 CDS YP_007902086.1 482903526 complement(1020031..1022706) 1 NC_021151.1 COG1048 Aconitase A; aconitate hydratase 1022706 1171376000988 STU288_04935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aconitate hydratase YP_007902086.1 1020031 R 1171376 CDS YP_007902087.1 482903527 complement(1023091..1023261) 1 NC_021151.1 hypothetical protein 1023261 1171376000989 STU288_04940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902087.1 1023091 R 1171376 CDS YP_007902088.1 482903528 complement(1023262..1023390) 1 NC_021151.1 hypothetical protein 1023390 1171376000990 STU288_04945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902088.1 1023262 R 1171376 CDS YP_007902089.1 482903529 complement(1023683..1024657) 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional regulator CysB 1024657 cysB 1171376000991 cysB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator CysB YP_007902089.1 1023683 R 1171376 CDS YP_007902090.1 482903530 complement(1025068..1027665) 1 NC_021151.1 COG0550 Topoisomerase IA; DNA topoisomerase I subunit omega 1027665 1171376000992 STU288_04955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA topoisomerase I subunit omega YP_007902090.1 1025068 R 1171376 CDS YP_007902091.1 482903531 1028068..1028319 1 NC_021151.1 hypothetical protein 1028319 1171376000993 STU288_04960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902091.1 1028068 D 1171376 CDS YP_007902092.1 482903532 complement(1028361..1029407) 1 NC_021151.1 COG0616 Periplasmic serine proteases (ClpP class); inner membrane peptidase 1029407 1171376000994 STU288_04965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane peptidase YP_007902092.1 1028361 R 1171376 CDS YP_007902093.1 482903533 1029645..1030406 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxoacyl-(acyl carrier protein) reductase 1030406 1171376000995 STU288_04970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxoacyl-(acyl carrier protein) reductase YP_007902093.1 1029645 D 1171376 CDS YP_007902094.1 482903534 1030403..1030993 1 NC_021151.1 COG2109 ATP:corrinoid adenosyltransferase; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 1030993 1171376000996 STU288_04975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase YP_007902094.1 1030403 D 1171376 CDS YP_007902095.1 482903535 complement(1031080..1031955) 1 NC_021151.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridylate synthase B 1031955 1171376000997 STU288_04980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA pseudouridylate synthase B YP_007902095.1 1031080 R 1171376 CDS YP_007902096.1 482903536 complement(1032056..1032676) 1 NC_021151.1 COG0009 Putative translation factor (SUA5); hypothetical protein 1032676 1171376000998 STU288_04985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902096.1 1032056 R 1171376 CDS YP_007902097.1 482903537 complement(1032684..1033565) 1 NC_021151.1 COG0613 Predicted metal-dependent phosphoesterases (PHP family); Protein trpH 1033565 1171376000999 STU288_04990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein trpH YP_007902097.1 1032684 R 1171376 CDS YP_007902098.1 482903538 1033826..1035388 1 NC_021151.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 1035388 1171376001000 STU288_04995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anthranilate synthase component I YP_007902098.1 1033826 D 1171376 CDS YP_007902099.1 482903539 1035388..1036983 1 NC_021151.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1036983 1171376001001 STU288_05000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_007902099.1 1035388 D 1171376 CDS YP_007902100.1 482903540 1036987..1038345 1 NC_021151.1 COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1038345 1171376001002 STU288_05005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_007902100.1 1036987 D 1171376 CDS YP_007902101.1 482903541 1038355..1039548 1 NC_021151.1 COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 1039548 1171376001003 STU288_05010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tryptophan synthase subunit beta YP_007902101.1 1038355 D 1171376 CDS YP_007902102.1 482903542 1039548..1040354 1 NC_021151.1 COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1040354 trpA 1171376001004 trpA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tryptophan synthase subunit alpha YP_007902102.1 1039548 D 1171376 CDS YP_007902103.1 482903543 1041106..1041609 1 NC_021151.1 COG3685 Uncharacterized protein conserved in bacteria; Protein yciF 1041609 1171376001005 STU288_05020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein yciF YP_007902103.1 1041106 D 1171376 CDS YP_007902104.1 482903544 1041683..1042189 1 NC_021151.1 COG3685 Uncharacterized protein conserved in bacteria; Protein yciE 1042189 1171376001006 STU288_05025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein yciE YP_007902104.1 1041683 D 1171376 CDS YP_007902105.1 482903545 1042209..1043087 1 NC_021151.1 COG3546 Mn-containing catalase; Manganese catalase 1043087 1171376001007 STU288_05030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Manganese catalase YP_007902105.1 1042209 D 1171376 CDS YP_007902106.1 482903546 complement(1043169..1043807) 1 NC_021151.1 COG3047 Outer membrane protein W; outer membrane protein W 1043807 1171376001008 STU288_05035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein W YP_007902106.1 1043169 R 1171376 CDS YP_007902107.1 482903547 1044145..1044549 1 NC_021151.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 1044549 1171376001009 STU288_05040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902107.1 1044145 D 1171376 CDS YP_007902108.1 482903548 1044575..1045318 1 NC_021151.1 hypothetical protein 1045318 1171376001010 STU288_05045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902108.1 1044575 D 1171376 CDS YP_007902109.1 482903549 1045375..1045914 1 NC_021151.1 COG2917 Intracellular septation protein A; intracellular septation protein A 1045914 1171376001011 STU288_05050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 intracellular septation protein A YP_007902109.1 1045375 D 1171376 CDS YP_007902110.1 482903550 1046075..1046476 1 NC_021151.1 COG1607 Acyl-CoA hydrolase; acyl-CoA esterase 1046476 1171376001012 STU288_05055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA esterase YP_007902110.1 1046075 D 1171376 CDS YP_007902111.1 482903551 complement(1046536..1047264) 1 NC_021151.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; transport protein TonB 1047264 1171376001013 STU288_05060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transport protein TonB YP_007902111.1 1046536 R 1171376 CDS YP_007902112.1 482903552 1047488..1047784 1 NC_021151.1 COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein 1047784 1171376001014 STU288_05065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902112.1 1047488 D 1171376 CDS YP_007902113.1 482903553 complement(1047828..1048001) 1 NC_021151.1 hypothetical protein 1048001 1171376001015 STU288_05070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902113.1 1047828 R 1171376 CDS YP_007902114.1 482903554 1048144..1049604 1 NC_021151.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase 1049604 cls 1171376001016 cls Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cardiolipin synthetase YP_007902114.1 1048144 D 1171376 CDS YP_007902115.1 482903555 1049638..1049967 1 NC_021151.1 COG3099 Uncharacterized protein conserved in bacteria; dsDNA-mimic protein 1049967 1171376001017 STU288_05080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dsDNA-mimic protein YP_007902115.1 1049638 D 1171376 CDS YP_007902116.1 482903556 complement(1050015..1050851) 1 NC_021151.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component; Potassium voltage-gated channel subfamily A member 3 Voltage-gated potassium channel subunit Kv1.3 1050851 1171376001018 STU288_05085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Potassium voltage-gated channel subfamily A member 3 Voltage-gated potassium channel subunit Kv1.3 YP_007902116.1 1050015 R 1171376 CDS YP_007902117.1 482903557 complement(1050899..1051903) 1 NC_021151.1 COG4608 ABC-type oligopeptide transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppF 1051903 1171376001019 STU288_05090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptide ABC transporter ATP-binding protein OppF YP_007902117.1 1050899 R 1171376 CDS YP_007902118.1 482903558 complement(1051900..1052907) 1 NC_021151.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide transporter ATP-binding component 1052907 oppD 1171376001020 oppD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptide transporter ATP-binding component YP_007902118.1 1051900 R 1171376 CDS YP_007902119.1 482903559 complement(1052919..1053827) 1 NC_021151.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease OppC 1053827 1171376001021 STU288_05100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptide ABC transporter permease OppC YP_007902119.1 1052919 R 1171376 CDS YP_007902120.1 482903560 complement(1053842..1054762) 1 NC_021151.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transporter permease 1054762 oppB 1171376001022 oppB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptide transporter permease YP_007902120.1 1053842 R 1171376 CDS YP_007902121.1 482903561 complement(1054884..1056515) 1 NC_021151.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; oligopeptide ABC transporter substrate-binding protein OppA 1056515 1171376001023 STU288_05110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptide ABC transporter substrate-binding protein OppA YP_007902121.1 1054884 R 1171376 CDS YP_007902122.1 482903562 complement(1057280..1057927) 1 NC_021151.1 COG2095 Multiple antibiotic transporter; hypothetical protein 1057927 1171376001024 STU288_05115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902122.1 1057280 R 1171376 CDS YP_007902123.1 482903563 1058404..1061082 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1061082 1171376001025 STU288_05120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_007902123.1 1058404 D 1171376 CDS YP_007902124.1 482903564 complement(1061279..1061896) 1 NC_021151.1 COG1435 Thymidine kinase; thymidine kinase 1061896 1171376001026 STU288_05125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thymidine kinase YP_007902124.1 1061279 R 1171376 CDS YP_007902125.1 482903565 1062559..1062972 1 NC_021151.1 COG2916 DNA-binding protein H-NS; global DNA-binding transcriptional dual regulator H-NS 1062972 1171376001027 STU288_05130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 global DNA-binding transcriptional dual regulator H-NS YP_007902125.1 1062559 D 1171376 CDS YP_007902126.1 482903566 complement(1063104..1064012) 1 NC_021151.1 COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1064012 1171376001028 STU288_05135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_007902126.1 1063104 R 1171376 CDS YP_007902127.1 482903567 complement(1064215..1065228) 1 NC_021151.1 COG0784 FOG: CheY-like receiver; response regulator of RpoS 1065228 1171376001029 STU288_05140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 response regulator of RpoS YP_007902127.1 1064215 R 1171376 CDS YP_007902128.1 482903568 complement(1065319..1066224) 1 NC_021151.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein 1066224 1171376001030 STU288_05145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902128.1 1065319 R 1171376 CDS YP_007902129.1 482903569 1066335..1066793 1 NC_021151.1 COG3012 Uncharacterized protein conserved in bacteria; hypothetical protein 1066793 1171376001031 STU288_05150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902129.1 1066335 D 1171376 CDS YP_007902130.1 482903570 1066844..1067707 1 NC_021151.1 COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate deformylase 1067707 purU 1171376001032 purU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formyltetrahydrofolate deformylase YP_007902130.1 1066844 D 1171376 CDS YP_007902131.1 482903571 complement(1068480..1070009) 1 NC_021151.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1070009 1171376001035 STU288_05160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902131.1 1068480 R 1171376 CDS YP_007902132.1 482903572 1070045..1070209 1 NC_021151.1 hypothetical protein 1070209 1171376001036 STU288_05165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902132.1 1070045 D 1171376 CDS YP_007902133.1 482903573 complement(1070251..1070928) 1 NC_021151.1 COG2181 Nitrate reductase gamma subunit; nitrate reductase A subunit gamma 1070928 narI 1171376001037 narI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase A subunit gamma YP_007902133.1 1070251 R 1171376 CDS YP_007902134.1 482903574 complement(1070928..1071638) 1 NC_021151.1 COG2180 Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1071638 1171376001038 STU288_05175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase molybdenum cofactor assembly chaperone NarJ YP_007902134.1 1070928 R 1171376 CDS YP_007902135.1 482903575 complement(1071635..1073170) 1 NC_021151.1 COG1140 Nitrate reductase beta subunit; nitrate reductase A subunit beta 1073170 narH 1171376001039 narH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase A subunit beta YP_007902135.1 1071635 R 1171376 CDS YP_007902136.1 482903576 complement(1073167..1076910) 1 NC_021151.1 COG5013 Nitrate reductase alpha subunit; nitrate reductase A subunit alpha 1076910 narG 1171376001040 narG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase A subunit alpha YP_007902136.1 1073167 R 1171376 CDS YP_007902137.1 482903577 complement(1077298..1078695) 1 NC_021151.1 COG2223 Nitrate/nitrite transporter; nitrate/nitrite transporter NarK 1078695 1171376001041 STU288_05190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate/nitrite transporter NarK YP_007902137.1 1077298 R 1171376 CDS YP_007902138.1 482903578 1079036..1080832 1 NC_021151.1 COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarX 1080832 1171376001042 STU288_05195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate/nitrite sensor protein NarX YP_007902138.1 1079036 D 1171376 CDS YP_007902139.1 482903579 1080825..1081475 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarL 1081475 1171376001043 STU288_05200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator NarL YP_007902139.1 1080825 D 1171376 CDS YP_007902140.1 482903580 complement(1081476..1082858) 1 NC_021151.1 invasin 1082858 1171376001044 STU288_05205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasin YP_007902140.1 1081476 R 1171376 CDS YP_007902141.1 482903581 1083077..1083430 1 NC_021151.1 COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; Sulfurtransferase tusD tRNA 2-thiouridine synthesizing protein D 1083430 1171376001045 STU288_05210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Sulfurtransferase tusD tRNA 2-thiouridine synthesizing protein D YP_007902141.1 1083077 D 1171376 CDS YP_007902142.1 482903582 complement(1083510..1083740) 1 NC_021151.1 COG4572 Putative cation transport regulator; cation transport regulator 1083740 chaB 1171376001046 chaB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation transport regulator YP_007902142.1 1083510 R 1171376 CDS YP_007902143.1 482903583 1084007..1085107 1 NC_021151.1 COG0387 Ca2+/H+ antiporter; calcium/sodium:proton antiporter 1085107 1171376001047 STU288_05220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 calcium/sodium:proton antiporter YP_007902143.1 1084007 D 1171376 CDS YP_007902144.1 482903584 complement(1085161..1086015) 1 NC_021151.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase 1086015 1171376001048 STU288_05225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-dehydro-3-deoxyphosphooctonate aldolase YP_007902144.1 1085161 R 1171376 CDS YP_007902145.1 482903585 complement(1086053..1086862) 1 NC_021151.1 COG2912 Uncharacterized conserved protein; hypothetical protein 1086862 1171376001049 STU288_05230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902145.1 1086053 R 1171376 CDS YP_007902146.1 482903586 complement(1086866..1087255) 1 NC_021151.1 COG3094 Uncharacterized protein conserved in bacteria; hypothetical protein 1087255 1171376001050 STU288_05235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902146.1 1086866 R 1171376 CDS YP_007902147.1 482903587 complement(1087252..1088085) 1 NC_021151.1 COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1088085 1171376001051 STU288_05240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_007902147.1 1087252 R 1171376 CDS YP_007902148.1 482903588 complement(1088085..1089167) 1 NC_021151.1 COG0216 Protein chain release factor A; peptide chain release factor 1 1089167 prfA 1171376001052 prfA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptide chain release factor 1 YP_007902148.1 1088085 R 1171376 CDS YP_007902149.1 482903589 complement(1089208..1090464) 1 NC_021151.1 COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase 1090464 hemA 1171376001053 hemA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamyl-tRNA reductase YP_007902149.1 1089208 R 1171376 CDS YP_007902150.1 482903590 1090778..1091401 1 NC_021151.1 COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis; outer membrane lipoprotein LolB 1091401 lolB 1171376001054 lolB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein LolB YP_007902150.1 1090778 D 1171376 CDS YP_007902151.1 482903591 1091398..1092249 1 NC_021151.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1092249 ipk 1171376001055 ipk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_007902151.1 1091398 D 1171376 CDS YP_007902152.1 482903592 1092515..1093462 1 NC_021151.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 1093462 1171376001056 STU288_05265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribose-phosphate pyrophosphokinase YP_007902152.1 1092515 D 1171376 CDS YP_007902153.1 482903593 1093587..1095272 1 NC_021151.1 COG0659 Sulfate permease and related transporters (MFS superfamily); transporter 1095272 1171376001057 STU288_05270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007902153.1 1093587 D 1171376 CDS YP_007902154.1 482903594 complement(1095317..1095595) 1 NC_021151.1 hypothetical protein 1095595 1171376001058 STU288_05275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902154.1 1095317 R 1171376 CDS YP_007902155.1 482903595 1095871..1096455 1 NC_021151.1 COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1096455 1171376001059 STU288_05280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-tRNA hydrolase YP_007902155.1 1095871 D 1171376 CDS YP_007902156.1 482903596 1096572..1097663 1 NC_021151.1 COG0012 Predicted GTPase, probable translation factor; GTP-binding protein YchF 1097663 1171376001060 STU288_05285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein YchF YP_007902156.1 1096572 D 1171376 CDS YP_007902157.1 482903597 complement(1097822..1099087) 1 NC_021151.1 hypothetical protein 1099087 1171376001061 STU288_05290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902157.1 1097822 R 1171376 CDS YP_007902158.1 482903598 1099582..1100700 1 NC_021151.1 COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 1, small subunit 1100700 1171376001062 STU288_05295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 1, small subunit YP_007902158.1 1099582 D 1171376 CDS YP_007902159.1 482903599 1100697..1102490 1 NC_021151.1 COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 1 large subunit 1102490 1171376001063 STU288_05300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 1 large subunit YP_007902159.1 1100697 D 1171376 CDS YP_007902160.1 482903600 1102509..1103240 1 NC_021151.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; hydrogenase 1 b-type cytochrome subunit 1103240 1171376001064 STU288_05305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 1 b-type cytochrome subunit YP_007902160.1 1102509 D 1171376 CDS YP_007902161.1 482903601 1103237..1103833 1 NC_021151.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 1103833 1171376001065 STU288_05310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 1 maturation protease YP_007902161.1 1103237 D 1171376 CDS YP_007902162.1 482903602 1103823..1104227 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE 1104227 1171376001066 STU288_05315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase-1 operon protein HyaE YP_007902162.1 1103823 D 1171376 CDS YP_007902163.1 482903603 1104224..1105072 1 NC_021151.1 hydrogenase-1 operon protein HyaF 1105072 1171376001067 STU288_05320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase-1 operon protein HyaF YP_007902163.1 1104224 D 1171376 CDS YP_007902164.1 482903604 1105147..1106691 1 NC_021151.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome bd-II oxidase subunit 1 1106691 1171376001068 STU288_05325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome bd-II oxidase subunit 1 YP_007902164.1 1105147 D 1171376 CDS YP_007902165.1 482903605 1106703..1107839 1 NC_021151.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome bd-II oxidase subunit 2 1107839 1171376001069 STU288_05330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome bd-II oxidase subunit 2 YP_007902165.1 1106703 D 1171376 CDS YP_007902166.1 482903606 1107852..1107941 1 NC_021151.1 hypothetical protein 1107941 1171376001070 STU288_05335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902166.1 1107852 D 1171376 CDS YP_007902167.1 482903607 1108336..1109610 1 NC_021151.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1109610 1171376001071 STU288_05340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate dehydrogenase YP_007902167.1 1108336 D 1171376 CDS YP_007902168.1 482903608 1109824..1111536 1 NC_021151.1 COG1626 Neutral trehalase; trehalase 1111536 treA 1171376001072 treA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalase YP_007902168.1 1109824 D 1171376 CDS YP_007902169.1 482903609 complement(1111599..1111853) 1 NC_021151.1 COG2261 Predicted membrane protein; UPF0410 protein ymge Transglycosylase-associated gene protein 1111853 1171376001073 STU288_05350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0410 protein ymge Transglycosylase-associated gene protein YP_007902169.1 1111599 R 1171376 CDS YP_007902170.1 482903610 1112022..1112756 1 NC_021151.1 COG5581 Predicted glycosyltransferase; inner membrane protein 1112756 1171376001074 STU288_05355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007902170.1 1112022 D 1171376 CDS YP_007902171.1 482903611 complement(1112770..1113381) 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein endotransglycosylase E 1113381 emtA 1171376001075 emtA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lytic murein endotransglycosylase E YP_007902171.1 1112770 R 1171376 CDS YP_007902172.1 482903612 1113552..1114466 1 NC_021151.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; L,D-carboxypeptidase A 1114466 ldcA 1171376001076 ldcA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L,D-carboxypeptidase A YP_007902172.1 1113552 D 1171376 CDS YP_007902173.1 482903613 1114563..1116296 1 NC_021151.1 COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; potassium/proton antiporter 1116296 1171376001077 STU288_05370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium/proton antiporter YP_007902173.1 1114563 D 1171376 CDS YP_007902174.1 482903614 complement(1116359..1117429) 1 NC_021151.1 COG0787 Alanine racemase; alanine racemase 1117429 dadX 1171376001078 dadX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alanine racemase YP_007902174.1 1116359 R 1171376 CDS YP_007902175.1 482903615 complement(1117443..1118741) 1 NC_021151.1 COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase small subunit 1118741 1171376001079 STU288_05380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-amino acid dehydrogenase small subunit YP_007902175.1 1117443 R 1171376 CDS YP_007902176.1 482903616 1119064..1120596 1 NC_021151.1 COG2719 Uncharacterized conserved protein; SpoVR family protein 1120596 1171376001080 STU288_05385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SpoVR family protein YP_007902176.1 1119064 D 1171376 CDS YP_007902177.1 482903617 complement(1120643..1121362) 1 NC_021151.1 COG2186 Transcriptional regulators; fatty acid metabolism regulator 1121362 1171376001081 STU288_05390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fatty acid metabolism regulator YP_007902177.1 1120643 R 1171376 CDS YP_007902178.1 482903618 1121582..1123126 1 NC_021151.1 COG3067 Na+/H+ antiporter; sodium/proton antiporter 1123126 nhaB 1171376001082 nhaB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium/proton antiporter YP_007902178.1 1121582 D 1171376 CDS YP_007902179.1 482903619 1123268..1123798 1 NC_021151.1 COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein B 1123798 1171376001083 STU288_05400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 disulfide bond formation protein B YP_007902179.1 1123268 D 1171376 CDS YP_007902180.1 482903620 1123907..1124248 1 NC_021151.1 COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; hypothetical protein 1124248 1171376001084 STU288_05405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902180.1 1123907 D 1171376 CDS YP_007902181.1 482903621 complement(1124320..1124493) 1 NC_021151.1 Protein gnsA 1124493 1171376001085 STU288_05410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein gnsA YP_007902181.1 1124320 R 1171376 CDS YP_007902182.1 482903622 complement(1124866..1124964) 1 NC_021151.1 hypothetical protein 1124964 1171376001086 STU288_05415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902182.1 1124866 R 1171376 CDS YP_007902183.1 482903623 complement(1125174..1125620) 1 NC_021151.1 COG2983 Uncharacterized conserved protein; hypothetical protein 1125620 1171376001087 STU288_05420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902183.1 1125174 R 1171376 CDS YP_007902184.1 482903624 complement(1125713..1126372) 1 NC_021151.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); hypothetical protein 1126372 1171376001088 STU288_05425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902184.1 1125713 R 1171376 CDS YP_007902185.1 482903625 complement(1126422..1126715) 1 NC_021151.1 COG3100 Uncharacterized protein conserved in bacteria; hypothetical protein 1126715 1171376001089 STU288_05430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902185.1 1126422 R 1171376 CDS YP_007902186.1 482903626 1126841..1127548 1 NC_021151.1 COG0850 Septum formation inhibitor; septum formation inhibitor 1127548 minC 1171376001090 minC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 septum formation inhibitor YP_007902186.1 1126841 D 1171376 CDS YP_007902187.1 482903627 1127572..1128384 1 NC_021151.1 COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor MinD 1128384 1171376001091 STU288_05440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division inhibitor MinD YP_007902187.1 1127572 D 1171376 CDS YP_007902188.1 482903628 1128388..1128654 1 NC_021151.1 COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 1128654 minE 1171376001092 minE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division topological specificity factor MinE YP_007902188.1 1128388 D 1171376 CDS YP_007902189.1 482903629 complement(1128776..1129903) 1 NC_021151.1 COG0349 Ribonuclease D; ribonuclease D 1129903 1171376001093 STU288_05450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease D YP_007902189.1 1128776 R 1171376 CDS YP_007902190.1 482903630 complement(1129976..1131661) 1 NC_021151.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; long-chain-fatty-acid--CoA ligase 1131661 1171376001094 STU288_05455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long-chain-fatty-acid--CoA ligase YP_007902190.1 1129976 R 1171376 CDS YP_007902191.1 482903631 complement(1131866..1132447) 1 NC_021151.1 COG3065 Starvation-inducible outer membrane lipoprotein; lipoprotein 1132447 1171376001095 STU288_05460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902191.1 1131866 R 1171376 CDS YP_007902192.1 482903632 complement(1132519..1133214) 1 NC_021151.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; putative O-sialoglycoprotein endopeptidase Glycoprotease 1133214 1171376001096 STU288_05465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative O-sialoglycoprotein endopeptidase Glycoprotease YP_007902192.1 1132519 R 1171376 CDS YP_007902193.1 482903633 complement(1133272..1135182) 1 NC_021151.1 COG1199 Rad3-related DNA helicases; DinG family ATP-dependent helicase YoaA 1135182 1171376001097 STU288_05470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DinG family ATP-dependent helicase YoaA YP_007902193.1 1133272 R 1171376 CDS YP_007902194.1 482903634 1135313..1135657 1 NC_021151.1 COG0251 Putative translation initiation inhibitor, yjgF family; UPF0076 protein yabJ 1135657 1171376001098 STU288_05475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0076 protein yabJ YP_007902194.1 1135313 D 1171376 CDS YP_007902195.1 482903635 complement(1135663..1135842) 1 NC_021151.1 COG3140 Uncharacterized protein conserved in bacteria; hypothetical protein 1135842 1171376001099 STU288_05480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902195.1 1135663 R 1171376 CDS YP_007902196.1 482903636 1135926..1137287 1 NC_021151.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; aminodeoxychorismate synthase subunit I 1137287 pabB 1171376001100 pabB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminodeoxychorismate synthase subunit I YP_007902196.1 1135926 D 1171376 CDS YP_007902197.1 482903637 1137291..1137869 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 1137869 1171376001101 STU288_05490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NUDIX hydrolase YP_007902197.1 1137291 D 1171376 CDS YP_007902198.1 482903638 1138133..1139497 1 NC_021151.1 COG1760 L-serine deaminase; L-serine deaminase 1139497 1171376001102 STU288_05495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-serine deaminase YP_007902198.1 1138133 D 1171376 CDS YP_007902199.1 482903639 1139635..1141236 1 NC_021151.1 COG2200 FOG: EAL domain; hypothetical protein 1141236 1171376001103 STU288_05500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902199.1 1139635 D 1171376 CDS YP_007902200.1 482903640 complement(1141258..1142817) 1 NC_021151.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; UPF0053 protein 1142817 1171376001104 STU288_05505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0053 protein YP_007902200.1 1141258 R 1171376 CDS YP_007902201.1 482903641 1143290..1144258 1 NC_021151.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system mannose-specific transporter subunits IIAB 1144258 1171376001105 STU288_05510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannose-specific transporter subunits IIAB YP_007902201.1 1143290 D 1171376 CDS YP_007902202.1 482903642 1144311..1145111 1 NC_021151.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 1145111 1171376001106 STU288_05515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannose-specific transporter subunit IIC YP_007902202.1 1144311 D 1171376 CDS YP_007902203.1 482903643 1145115..1145975 1 NC_021151.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 1145975 1171376001107 STU288_05520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannose-specific transporter subunit IID YP_007902203.1 1145115 D 1171376 CDS YP_007902204.1 482903644 1146033..1146503 1 NC_021151.1 COG4811 Predicted membrane protein; hypothetical protein 1146503 1171376001108 STU288_05525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902204.1 1146033 D 1171376 CDS YP_007902205.1 482903645 1146901..1147467 1 NC_021151.1 COG1971 Predicted membrane protein; hypothetical protein 1147467 1171376001109 STU288_05530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902205.1 1146901 D 1171376 CDS YP_007902206.1 482903646 complement(1147464..1148273) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; 23S rRNA methyltransferase A 1148273 rrmA 1171376001110 rrmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA methyltransferase A YP_007902206.1 1147464 R 1171376 CDS YP_007902207.1 482903647 complement(1148339..1150084) 1 NC_021151.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 1150084 1171376001111 STU288_05540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-binding protein YP_007902207.1 1148339 R 1171376 CDS YP_007902208.1 482903648 complement(1150304..1150513) 1 NC_021151.1 COG1278 Cold shock proteins; Cold shock-like protein cspC 1150513 1171376001112 STU288_05545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cold shock-like protein cspC YP_007902208.1 1150304 R 1171376 CDS YP_007902209.1 482903649 complement(1150526..1150669) 1 NC_021151.1 putative cytoplasmic protein 1150669 1171376001113 STU288_05550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902209.1 1150526 R 1171376 CDS YP_007902210.1 482903650 complement(1151318..1151605) 1 NC_021151.1 hypothetical protein 1151605 1171376001114 STU288_05555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902210.1 1151318 R 1171376 CDS YP_007902211.1 482903651 complement(1151676..1151819) 1 NC_021151.1 PhoPQ regulatory protein 1151819 1171376001115 STU288_05560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PhoPQ regulatory protein YP_007902211.1 1151676 R 1171376 CDS YP_007902212.1 482903652 1151977..1152216 1 NC_021151.1 hypothetical protein 1152216 1171376001116 STU288_05565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902212.1 1151977 D 1171376 CDS YP_007902213.1 482903653 complement(1152312..1152413) 1 NC_021151.1 hypothetical protein 1152413 1171376001117 STU288_05570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902213.1 1152312 R 1171376 CDS YP_007902214.1 482903654 complement(1152428..1153219) 1 NC_021151.1 COG1414 Transcriptional regulator; DNA-binding transcriptional regulator KdgR 1153219 1171376001118 STU288_05575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator KdgR YP_007902214.1 1152428 R 1171376 CDS YP_007902215.1 482903655 1153395..1154768 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 1154768 1171376001119 STU288_05580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007902215.1 1153395 D 1171376 CDS YP_007902216.1 482903656 complement(1154816..1155697) 1 NC_021151.1 COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 1155697 1171376001120 STU288_05585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein HtpX YP_007902216.1 1154816 R 1171376 CDS YP_007902217.1 482903657 complement(1155890..1157938) 1 NC_021151.1 COG0793 Periplasmic protease; carboxy-terminal protease 1157938 1171376001121 STU288_05590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carboxy-terminal protease YP_007902217.1 1155890 R 1171376 CDS YP_007902218.1 482903658 complement(1157958..1158644) 1 NC_021151.1 COG3109 Activator of osmoprotectant transporter ProP; ProP expression regulator 1158644 1171376001122 STU288_05595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ProP expression regulator YP_007902218.1 1157958 R 1171376 CDS YP_007902219.1 482903659 complement(1158742..1159239) 1 NC_021151.1 COG1956 GAF domain-containing protein; putative nucleotide-binding protein 1159239 1171376001123 STU288_05600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative nucleotide-binding protein YP_007902219.1 1158742 R 1171376 CDS YP_007902220.1 482903660 1159368..1160651 1 NC_021151.1 COG2995 Uncharacterized paraquat-inducible protein A; integral membrane protein PqiA family 1160651 1171376001124 STU288_05605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integral membrane protein PqiA family YP_007902220.1 1159368 D 1171376 CDS YP_007902221.1 482903661 1160620..1163253 1 NC_021151.1 COG3008 Paraquat-inducible protein B; mce-like protein 1163253 1171376001125 STU288_05610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mce-like protein YP_007902221.1 1160620 D 1171376 CDS YP_007902222.1 482903662 1163229..1164821 1 NC_021151.1 COG0144 tRNA and rRNA cytosine-C5-methylases; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1164821 yebU 1171376001126 yebU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_007902222.1 1163229 D 1171376 CDS YP_007902223.1 482903663 1164885..1165124 1 NC_021151.1 hypothetical protein 1165124 1171376001127 STU288_05620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902223.1 1164885 D 1171376 CDS YP_007902224.1 482903664 1165235..1165426 1 NC_021151.1 putative inner membrane lipoprotein 1165426 1171376001128 STU288_05625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane lipoprotein YP_007902224.1 1165235 D 1171376 CDS YP_007902225.1 482903665 complement(1165445..1166095) 1 NC_021151.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 1 1166095 pphA 1171376001129 pphA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine/threonine protein phosphatase 1 YP_007902225.1 1165445 R 1171376 CDS YP_007902226.1 482903666 complement(1166082..1166198) 1 NC_021151.1 hypothetical protein 1166198 1171376001130 STU288_05635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902226.1 1166082 R 1171376 CDS YP_007902227.1 482903667 complement(1166319..1166483) 1 NC_021151.1 hypothetical protein 1166483 1171376001131 STU288_05640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902227.1 1166319 R 1171376 CDS YP_007902228.1 482903668 complement(1166768..1167490) 1 NC_021151.1 COG0481 Membrane GTPase LepA; type III secretion protein SopE2 1167490 1171376001132 STU288_05645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion protein SopE2 YP_007902228.1 1166768 R 1171376 CDS YP_007902229.1 482903669 1168174..1168569 1 NC_021151.1 COG5562 Phage envelope protein; hypothetical protein 1168569 1171376001133 STU288_05650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902229.1 1168174 D 1171376 CDS YP_007902230.1 482903670 1168899..1169375 1 NC_021151.1 hypothetical protein 1169375 1171376001134 STU288_05655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902230.1 1168899 D 1171376 CDS YP_007902231.1 482903671 complement(1169763..1170182) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 1170182 1171376001135 STU288_05660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acetyltransferase YP_007902231.1 1169763 R 1171376 CDS YP_007902232.1 482903672 1170728..1170874 1 NC_021151.1 hypothetical protein 1170874 1171376001136 STU288_05665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902232.1 1170728 D 1171376 CDS YP_007902233.1 482903673 complement(1171273..1171350) 1 NC_021151.1 transposase 1171350 1171376001137 STU288_05670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007902233.1 1171273 R 1171376 CDS YP_007902234.1 482903674 complement(1171464..1171610) 1 NC_021151.1 COG3328 Transposase and inactivated derivatives; transposase 1171610 1171376001138 STU288_05675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007902234.1 1171464 R 1171376 CDS YP_007902235.1 482903675 complement(1171610..1172467) 1 NC_021151.1 COG3328 Transposase and inactivated derivatives; hypothetical protein 1172467 1171376001139 STU288_05680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902235.1 1171610 R 1171376 CDS YP_007902236.1 482903676 1172591..1172959 1 NC_021151.1 COG0582 Integrase; hypothetical protein 1172959 1171376001140 STU288_05685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902236.1 1172591 D 1171376 CDS YP_007902237.1 482903677 complement(1173445..1173663) 1 NC_021151.1 hypothetical protein 1173663 1171376001141 STU288_05690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902237.1 1173445 R 1171376 CDS YP_007902238.1 482903678 1174263..1175177 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite transporter permease 1175177 1171376001142 STU288_05695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 drug/metabolite transporter permease YP_007902238.1 1174263 D 1171376 CDS YP_007902239.1 482903679 1175310..1175468 1 NC_021151.1 hypothetical protein 1175468 1171376001143 STU288_05700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902239.1 1175310 D 1171376 CDS YP_007902240.1 482903680 1175478..1176092 1 NC_021151.1 COG1495 Disulfide bond formation protein DsbB; hypothetical protein 1176092 1171376001144 STU288_05705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902240.1 1175478 D 1171376 CDS YP_007902241.1 482903681 complement(1177240..1177365) 1 NC_021151.1 COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; arsenical pump membrane protein 1177365 1171376001145 STU288_05710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arsenical pump membrane protein YP_007902241.1 1177240 R 1171376 CDS YP_007902242.1 482903682 1177264..1177422 1 NC_021151.1 hypothetical protein 1177422 1171376001146 STU288_05715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902242.1 1177264 D 1171376 CDS YP_007902243.1 482903683 1177628..1177744 1 NC_021151.1 tail fiber assembly protein 1177744 1171376001147 STU288_05720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tail fiber assembly protein YP_007902243.1 1177628 D 1171376 CDS YP_007902244.1 482903684 complement(1178232..1179113) 1 NC_021151.1 COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Phage Tail Assembly Protein 1179113 1171376001148 STU288_05725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage Tail Assembly Protein YP_007902244.1 1178232 R 1171376 CDS YP_007902245.1 482903685 complement(1179268..1179531) 1 NC_021151.1 hypothetical protein 1179531 1171376001149 STU288_05730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902245.1 1179268 R 1171376 CDS YP_007902246.1 482903686 1179839..1180006 1 NC_021151.1 hypothetical protein 1180006 1171376001150 STU288_05735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902246.1 1179839 D 1171376 CDS YP_007902247.1 482903687 complement(1180263..1180796) 1 NC_021151.1 exported bacteriophage protein 1180796 1171376001151 STU288_05740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exported bacteriophage protein YP_007902247.1 1180263 R 1171376 CDS YP_007902248.1 482903688 complement(1180850..1181080) 1 NC_021151.1 COG3179 Predicted chitinase; lytic enzyme 1181080 1171376001152 STU288_05745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lytic enzyme YP_007902248.1 1180850 R 1171376 CDS YP_007902249.1 482903689 1181111..1181764 1 NC_021151.1 bacteriophage encoded Exodeoxyribonuclease VIII 1181764 1171376001153 STU288_05750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage encoded Exodeoxyribonuclease VIII YP_007902249.1 1181111 D 1171376 CDS YP_007902250.1 482903690 1182310..1182678 1 NC_021151.1 COG0582 Integrase; integrase 1182678 1171376001154 STU288_05755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase YP_007902250.1 1182310 D 1171376 CDS YP_007902251.1 482903691 complement(1183052..1183405) 1 NC_021151.1 hypothetical protein 1183405 1171376001155 STU288_05760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902251.1 1183052 R 1171376 CDS YP_007902252.1 482903692 complement(1183422..1184294) 1 NC_021151.1 COG1276 Putative copper export protein; cation transporter 1184294 1171376001156 STU288_05765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation transporter YP_007902252.1 1183422 R 1171376 CDS YP_007902253.1 482903693 complement(1184298..1184672) 1 NC_021151.1 COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; hypothetical protein 1184672 1171376001157 STU288_05770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902253.1 1184298 R 1171376 CDS YP_007902254.1 482903694 1184810..1185040 1 NC_021151.1 DNA polymerase III subunit theta 1185040 1171376001158 STU288_05775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit theta YP_007902254.1 1184810 D 1171376 CDS YP_007902255.1 482903695 1185148..1185804 1 NC_021151.1 COG0388 Predicted amidohydrolase; carbon-nitrogen family hydrolase 1185804 1171376001159 STU288_05780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbon-nitrogen family hydrolase YP_007902255.1 1185148 D 1171376 CDS YP_007902256.1 482903696 1185828..1186526 1 NC_021151.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; exodeoxyribonuclease X 1186526 1171376001160 STU288_05785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exodeoxyribonuclease X YP_007902256.1 1185828 D 1171376 CDS YP_007902257.1 482903697 complement(1186561..1188612) 1 NC_021151.1 COG1770 Protease II; protease 2 1188612 1171376001161 STU288_05790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease 2 YP_007902257.1 1186561 R 1171376 CDS YP_007902258.1 482903698 complement(1188825..1189484) 1 NC_021151.1 COG2979 Uncharacterized protein conserved in bacteria; hypothetical protein 1189484 1171376001162 STU288_05795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902258.1 1188825 R 1171376 CDS YP_007902259.1 482903699 complement(1189578..1189931) 1 NC_021151.1 hypothetical protein 1189931 1171376001163 STU288_05800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902259.1 1189578 R 1171376 CDS YP_007902260.1 482903700 complement(1189999..1190289) 1 NC_021151.1 COG3141 Uncharacterized protein conserved in bacteria; DNA damage-inducible protein YebG 1190289 1171376001164 STU288_05805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA damage-inducible protein YebG YP_007902260.1 1189999 R 1171376 CDS YP_007902261.1 482903701 1190420..1191598 1 NC_021151.1 COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); phosphoribosylglycinamide formyltransferase 2 1191598 purT 1171376001165 purT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylglycinamide formyltransferase 2 YP_007902261.1 1190420 D 1171376 CDS YP_007902262.1 482903702 1191598..1191693 1 NC_021151.1 hypothetical protein 1191693 1171376001166 STU288_05815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902262.1 1191598 D 1171376 CDS YP_007902263.1 482903703 complement(1191698..1192339) 1 NC_021151.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1192339 1171376001167 STU288_05820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_007902263.1 1191698 R 1171376 CDS YP_007902264.1 482903704 complement(1192377..1194188) 1 NC_021151.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase 1194188 1171376001168 STU288_05825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphogluconate dehydratase YP_007902264.1 1192377 R 1171376 CDS YP_007902265.1 482903705 complement(1194423..1195898) 1 NC_021151.1 COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1195898 1171376001169 STU288_05830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-6-phosphate 1-dehydrogenase YP_007902265.1 1194423 R 1171376 CDS YP_007902266.1 482903706 1196240..1197109 1 NC_021151.1 COG1737 Transcriptional regulators; DNA-binding transcriptional regulator HexR 1197109 1171376001170 STU288_05835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator HexR YP_007902266.1 1196240 D 1171376 CDS YP_007902267.1 482903707 1197233..1198675 1 NC_021151.1 COG0469 Pyruvate kinase; pyruvate kinase 1198675 1171376001171 STU288_05840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate kinase YP_007902267.1 1197233 D 1171376 CDS YP_007902268.1 482903708 complement(1198748..1199719) 1 NC_021151.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1199719 1171376001172 STU288_05845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_007902268.1 1198748 R 1171376 CDS YP_007902269.1 482903709 1199718..1199945 1 NC_021151.1 COG0127 Xanthosine triphosphate pyrophosphatase; hypothetical protein 1199945 1171376001173 STU288_05850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902269.1 1199718 D 1171376 CDS YP_007902270.1 482903710 complement(1199836..1201155) 1 NC_021151.1 COG0739 Membrane proteins related to metalloendopeptidases; peptidase 1201155 1171376001174 STU288_05855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidase YP_007902270.1 1199836 R 1171376 CDS YP_007902271.1 482903711 complement(1201171..1202115) 1 NC_021151.1 COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; high-affinity zinc transporter periplasmic component 1202115 znuA 1171376001175 znuA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 high-affinity zinc transporter periplasmic component YP_007902271.1 1201171 R 1171376 CDS YP_007902272.1 482903712 1202194..1202949 1 NC_021151.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component; high-affinity zinc transporter ATPase 1202949 znuC 1171376001176 znuC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 high-affinity zinc transporter ATPase YP_007902272.1 1202194 D 1171376 CDS YP_007902273.1 482903713 1202946..1203731 1 NC_021151.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; high-affinity zinc transporter membrane component 1203731 znuB 1171376001177 znuB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 high-affinity zinc transporter membrane component YP_007902273.1 1202946 D 1171376 CDS YP_007902274.1 482903714 complement(1203810..1204820) 1 NC_021151.1 COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB 1204820 ruvB 1171376001178 ruvB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Holliday junction DNA helicase RuvB YP_007902274.1 1203810 R 1171376 CDS YP_007902275.1 482903715 complement(1204829..1205440) 1 NC_021151.1 COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA 1205440 ruvA 1171376001179 ruvA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Holliday junction DNA helicase RuvA YP_007902275.1 1204829 R 1171376 CDS YP_007902276.1 482903716 complement(1205615..1205740) 1 NC_021151.1 hypothetical protein 1205740 1171376001180 STU288_05885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902276.1 1205615 R 1171376 CDS YP_007902277.1 482903717 1205860..1206756 1 NC_021151.1 putative cytoplasmic protein 1206756 1171376001181 STU288_05890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902277.1 1205860 D 1171376 CDS YP_007902278.1 482903718 1207383..1207982 1 NC_021151.1 hypothetical protein 1207982 1171376001182 STU288_05895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902278.1 1207383 D 1171376 CDS YP_007902279.1 482903719 complement(1207984..1208505) 1 NC_021151.1 COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase 1208505 ruvC 1171376001183 ruvC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Holliday junction resolvase YP_007902279.1 1207984 R 1171376 CDS YP_007902280.1 482903720 complement(1208542..1209282) 1 NC_021151.1 COG0217 Uncharacterized conserved protein; hypothetical protein 1209282 1171376001184 STU288_05905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902280.1 1208542 R 1171376 CDS YP_007902281.1 482903721 complement(1209312..1209764) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dihydroneopterin triphosphate pyrophosphatase 1209764 nudB 1171376001185 nudB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroneopterin triphosphate pyrophosphatase YP_007902281.1 1209312 R 1171376 CDS YP_007902282.1 482903722 complement(1209867..1211639) 1 NC_021151.1 COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA ligase 1211639 aspS 1171376001186 aspS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartyl-tRNA ligase YP_007902282.1 1209867 R 1171376 CDS YP_007902283.1 482903723 1211964..1212530 1 NC_021151.1 COG1335 Amidases related to nicotinamidase; hydrolase 1212530 1171376001187 STU288_05920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007902283.1 1211964 D 1171376 CDS YP_007902284.1 482903724 1212527..1213345 1 NC_021151.1 COG1801 Uncharacterized conserved protein; hypothetical protein 1213345 1171376001188 STU288_05925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902284.1 1212527 D 1171376 CDS YP_007902285.1 482903725 1213398..1213793 1 NC_021151.1 COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily; Inner membrane protein yecN 1213793 1171376001189 STU288_05930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yecN YP_007902285.1 1213398 D 1171376 CDS YP_007902286.1 482903726 1213834..1214577 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; tRNA (cmo5U34)-methyltransferase 1214577 1171376001190 STU288_05935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA (cmo5U34)-methyltransferase YP_007902286.1 1213834 D 1171376 CDS YP_007902287.1 482903727 1214574..1215545 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; tRNA mo(5)U34 methyltransferase 1215545 1171376001191 STU288_05940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA mo(5)U34 methyltransferase YP_007902287.1 1214574 D 1171376 CDS YP_007902288.1 482903728 complement(1215781..1216527) 1 NC_021151.1 COG3142 Uncharacterized protein involved in copper resistance; copper homeostasis protein CutC 1216527 1171376001192 STU288_05945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 copper homeostasis protein CutC YP_007902288.1 1215781 R 1171376 CDS YP_007902289.1 482903729 complement(1216547..1217116) 1 NC_021151.1 COG3102 Uncharacterized protein conserved in bacteria; hypothetical protein 1217116 1171376001193 STU288_05950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902289.1 1216547 R 1171376 CDS YP_007902290.1 482903730 1217353..1219086 1 NC_021151.1 COG0018 Arginyl-tRNA synthetase; arginyl-tRNA ligase 1219086 argS 1171376001194 argS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginyl-tRNA ligase YP_007902290.1 1217353 D 1171376 CDS YP_007902291.1 482903731 1219275..1221146 1 NC_021151.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 1221146 1171376001195 STU288_05960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-binding protein 2 YP_007902291.1 1219275 D 1171376 CDS YP_007902292.1 482903732 complement(1221200..1222339) 1 NC_021151.1 COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins; putative glycosyl hydrolase yteR 1222339 1171376001196 STU288_05965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycosyl hydrolase yteR YP_007902292.1 1221200 R 1171376 CDS YP_007902293.1 482903733 complement(1222576..1222968) 1 NC_021151.1 flagellar protein FlhE 1222968 1171376001197 STU288_05970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar protein FlhE YP_007902293.1 1222576 R 1171376 CDS YP_007902294.1 482903734 complement(1222968..1225046) 1 NC_021151.1 COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA 1225046 flhA 1171376001198 flhA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FlhA YP_007902294.1 1222968 R 1171376 CDS YP_007902295.1 482903735 complement(1225039..1226190) 1 NC_021151.1 COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 1226190 flhB 1171376001199 flhB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FlhB YP_007902295.1 1225039 R 1171376 CDS YP_007902296.1 482903736 complement(1226384..1227028) 1 NC_021151.1 COG3143 Chemotaxis protein; chemotaxis regulator CheZ 1227028 1171376001200 STU288_05985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chemotaxis regulator CheZ YP_007902296.1 1226384 R 1171376 CDS YP_007902297.1 482903737 complement(1227039..1227428) 1 NC_021151.1 COG0784 FOG: CheY-like receiver; chemotaxis regulatory protein CheY 1227428 1171376001201 STU288_05990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chemotaxis regulatory protein CheY YP_007902297.1 1227039 R 1171376 CDS YP_007902298.1 482903738 complement(1227446..1228495) 1 NC_021151.1 COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; chemotaxis-specific protein-glutamate methyltransferase 1228495 1171376001202 STU288_05995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chemotaxis-specific protein-glutamate methyltransferase YP_007902298.1 1227446 R 1171376 CDS YP_007902299.1 482903739 complement(1228492..1229358) 1 NC_021151.1 COG1352 Methylase of chemotaxis methyl-accepting proteins; chemotaxis methyltransferase CheR 1229358 1171376001203 STU288_06000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chemotaxis methyltransferase CheR YP_007902299.1 1228492 R 1171376 CDS YP_007902300.1 482903740 complement(1229512..1231173) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein II 1231173 1171376001204 STU288_06005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-accepting chemotaxis protein II YP_007902300.1 1229512 R 1171376 CDS YP_007902301.1 482903741 complement(1231410..1231913) 1 NC_021151.1 COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein 1231913 1171376001205 STU288_06010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 purine-binding chemotaxis protein YP_007902301.1 1231410 R 1171376 CDS YP_007902302.1 482903742 complement(1231999..1233945) 1 NC_021151.1 COG0643 Chemotaxis protein histidine kinase and related kinases; chemotaxis protein CheA 1233945 1171376001206 STU288_06015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chemotaxis protein CheA YP_007902302.1 1231999 R 1171376 CDS YP_007902303.1 482903743 complement(1233956..1234885) 1 NC_021151.1 COG1360 Flagellar motor protein; flagellar motor protein MotB 1234885 motB 1171376001207 motB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar motor protein MotB YP_007902303.1 1233956 R 1171376 CDS YP_007902304.1 482903744 complement(1234882..1235769) 1 NC_021151.1 COG1291 Flagellar motor component; flagellar motor protein MotA 1235769 1171376001208 STU288_06025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar motor protein MotA YP_007902304.1 1234882 R 1171376 CDS YP_007902305.1 482903745 complement(1235894..1236472) 1 NC_021151.1 transcriptional activator FlhC 1236472 1171376001209 STU288_06030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator FlhC YP_007902305.1 1235894 R 1171376 CDS YP_007902306.1 482903746 complement(1236475..1236816) 1 NC_021151.1 transcriptional activator FlhD 1236816 1171376001210 STU288_06035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator FlhD YP_007902306.1 1236475 R 1171376 CDS YP_007902307.1 482903747 1237612..1238040 1 NC_021151.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspC 1238040 1171376001211 STU288_06040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress protein UspC YP_007902307.1 1237612 D 1171376 CDS YP_007902308.1 482903748 complement(1238058..1239479) 1 NC_021151.1 COG0380 Trehalose-6-phosphate synthase; trehalose-6-phosphate synthase 1239479 1171376001212 STU288_06045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalose-6-phosphate synthase YP_007902308.1 1238058 R 1171376 CDS YP_007902309.1 482903749 complement(1239454..1240257) 1 NC_021151.1 COG1877 Trehalose-6-phosphatase; trehalose-6-phosphate phosphatase 1240257 1171376001213 STU288_06050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalose-6-phosphate phosphatase YP_007902309.1 1239454 R 1171376 CDS YP_007902310.1 482903750 complement(1240890..1241447) 1 NC_021151.1 COG0693 Putative intracellular protease/amidase; hypothetical protein 1241447 1171376001214 STU288_06055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902310.1 1240890 R 1171376 CDS YP_007902311.1 482903751 complement(1241702..1241797) 1 NC_021151.1 hypothetical protein 1241797 1171376001215 STU288_06060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902311.1 1241702 R 1171376 CDS YP_007902312.1 482903752 1241998..1242501 1 NC_021151.1 COG1528 Ferritin-like protein; ferritin-like protein 1242501 1171376001216 STU288_06065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferritin-like protein YP_007902312.1 1241998 D 1171376 CDS YP_007902313.1 482903753 complement(1242680..1243318) 1 NC_021151.1 COG0698 Ribose 5-phosphate isomerase RpiB; hypothetical protein 1243318 1171376001217 STU288_06070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902313.1 1242680 R 1171376 CDS YP_007902314.1 482903754 1243574..1243909 1 NC_021151.1 hypothetical protein 1243909 1171376001218 STU288_06075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902314.1 1243574 D 1171376 CDS YP_007902315.1 482903755 1244149..1244646 1 NC_021151.1 COG1528 Ferritin-like protein; ferritin 1244646 1171376001219 STU288_06080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferritin YP_007902315.1 1244149 D 1171376 CDS YP_007902316.1 482903756 complement(1244692..1244931) 1 NC_021151.1 hypothetical protein 1244931 1171376001220 STU288_06085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902316.1 1244692 R 1171376 CDS YP_007902317.1 482903757 1245158..1246369 1 NC_021151.1 COG0814 Amino acid permeases; tyrosine transporter TyrP 1246369 1171376001221 STU288_06090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tyrosine transporter TyrP YP_007902317.1 1245158 D 1171376 CDS YP_007902318.1 482903758 complement(1246444..1247109) 1 NC_021151.1 COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; hypothetical protein 1247109 1171376001222 STU288_06095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902318.1 1246444 R 1171376 CDS YP_007902319.1 482903759 complement(1247347..1247673) 1 NC_021151.1 hypothetical protein 1247673 1171376001223 STU288_06100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902319.1 1247347 R 1171376 CDS YP_007902320.1 482903760 complement(1247886..1249319) 1 NC_021151.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 1249319 1171376001224 STU288_06105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902320.1 1247886 R 1171376 CDS YP_007902321.1 482903761 complement(1249538..1249870) 1 NC_021151.1 putative inner membrane protein 1249870 1171376001225 STU288_06110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902321.1 1249538 R 1171376 CDS YP_007902322.1 482903762 complement(1250571..1251119) 1 NC_021151.1 COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthetase 1251119 1171376001229 STU288_06115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatidylglycerophosphate synthetase YP_007902322.1 1250571 R 1171376 CDS YP_007902323.1 482903763 complement(1251176..1253008) 1 NC_021151.1 COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 1253008 uvrC 1171376001230 uvrC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excinuclease ABC subunit C YP_007902323.1 1251176 R 1171376 CDS YP_007902324.1 482903764 complement(1253005..1253661) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator 1253661 1171376001231 STU288_06125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 response regulator YP_007902324.1 1253005 R 1171376 CDS YP_007902325.1 482903765 1253973..1254128 1 NC_021151.1 putative inner membrane protein 1254128 1171376001232 STU288_06130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902325.1 1253973 D 1171376 CDS YP_007902326.1 482903766 1254125..1254349 1 NC_021151.1 hypothetical protein 1254349 1171376001233 STU288_06135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902326.1 1254125 D 1171376 CDS YP_007902327.1 482903767 complement(1254416..1255138) 1 NC_021151.1 COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional activator SdiA 1255138 1171376001234 STU288_06140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator SdiA YP_007902327.1 1254416 R 1171376 CDS YP_007902328.1 482903768 complement(1255370..1256122) 1 NC_021151.1 COG1126 ABC-type polar amino acid transport system, ATPase component; amino-acid ABC transporter ATP-binding protein YecC 1256122 1171376001235 STU288_06145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino-acid ABC transporter ATP-binding protein YecC YP_007902328.1 1255370 R 1171376 CDS YP_007902329.1 482903769 complement(1256119..1256787) 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 1256787 1171376001236 STU288_06150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid ABC transporter permease YP_007902329.1 1256119 R 1171376 CDS YP_007902330.1 482903770 complement(1256808..1257794) 1 NC_021151.1 COG2515 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase 1257794 1171376001237 STU288_06155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-cysteine desulfhydrase YP_007902330.1 1256808 R 1171376 CDS YP_007902331.1 482903771 complement(1257948..1258748) 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; cystine transporter subunit 1258748 1171376001238 STU288_06160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cystine transporter subunit YP_007902331.1 1257948 R 1171376 CDS YP_007902332.1 482903772 complement(1258895..1259446) 1 NC_021151.1 flagella biosynthesis protein FliZ 1259446 1171376001239 STU288_06165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagella biosynthesis protein FliZ YP_007902332.1 1258895 R 1171376 CDS YP_007902333.1 482903773 complement(1259505..1260224) 1 NC_021151.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 1260224 fliA 1171376001240 fliA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis sigma factor YP_007902333.1 1259505 R 1171376 CDS YP_007902334.1 482903774 complement(1260493..1260951) 1 NC_021151.1 COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 1260951 1171376001241 STU288_06175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase for insertion sequence element IS200 YP_007902334.1 1260493 R 1171376 CDS YP_007902335.1 482903775 complement(1261132..1262337) 1 NC_021151.1 lysine-N-methylase 1262337 1171376001242 STU288_06180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysine-N-methylase YP_007902335.1 1261132 R 1171376 CDS YP_007902336.1 482903776 complement(1262416..1263903) 1 NC_021151.1 COG1344 Flagellin and related hook-associated proteins; flagellin 1263903 1171376001243 STU288_06185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellin YP_007902336.1 1262416 R 1171376 CDS YP_007902337.1 482903777 1264160..1265563 1 NC_021151.1 COG1345 Flagellar capping protein; flagellar capping protein 1265563 fliD 1171376001244 fliD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar capping protein YP_007902337.1 1264160 D 1171376 CDS YP_007902338.1 482903778 1265578..1265985 1 NC_021151.1 COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 1265985 fliS 1171376001245 fliS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar protein FliS YP_007902338.1 1265578 D 1171376 CDS YP_007902339.1 482903779 1265985..1266353 1 NC_021151.1 flagellar biosynthesis protein FliT 1266353 1171376001246 STU288_06200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FliT YP_007902339.1 1265985 D 1171376 CDS YP_007902340.1 482903780 1266425..1267909 1 NC_021151.1 COG0366 Glycosidases; cytoplasmic alpha-amylase 1267909 1171376001247 STU288_06205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoplasmic alpha-amylase YP_007902340.1 1266425 D 1171376 CDS YP_007902341.1 482903781 complement(1267949..1268374) 1 NC_021151.1 lipoprotein 1268374 1171376001248 STU288_06210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902341.1 1267949 R 1171376 CDS YP_007902342.1 482903782 1268560..1269765 1 NC_021151.1 COG2391 Predicted transporter component; hypothetical protein 1269765 1171376001249 STU288_06215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902342.1 1268560 D 1171376 CDS YP_007902343.1 482903783 1269762..1269995 1 NC_021151.1 COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 1269995 1171376001250 STU288_06220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902343.1 1269762 D 1171376 CDS YP_007902344.1 482903784 1270293..1270646 1 NC_021151.1 hypothetical protein 1270646 1171376001251 STU288_06225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902344.1 1270293 D 1171376 CDS YP_007902345.1 482903785 complement(1270766..1271080) 1 NC_021151.1 COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE 1271080 fliE 1171376001252 fliE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar hook-basal body protein FliE YP_007902345.1 1270766 R 1171376 CDS YP_007902346.1 482903786 1271297..1272979 1 NC_021151.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 1272979 fliF 1171376001253 fliF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar MS-ring protein YP_007902346.1 1271297 D 1171376 CDS YP_007902347.1 482903787 1272972..1273967 1 NC_021151.1 COG1536 Flagellar motor switch protein; flagellar motor switch protein G 1273967 fliG 1171376001254 fliG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar motor switch protein G YP_007902347.1 1272972 D 1171376 CDS YP_007902348.1 482903788 1273960..1274667 1 NC_021151.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 1274667 fliH 1171376001255 fliH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar assembly protein H YP_007902348.1 1273960 D 1171376 CDS YP_007902349.1 482903789 1274667..1276037 1 NC_021151.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 1276037 fliI 1171376001256 fliI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellum-specific ATP synthase YP_007902349.1 1274667 D 1171376 CDS YP_007902350.1 482903790 1276059..1276502 1 NC_021151.1 COG2882 Flagellar biosynthesis chaperone; flagellar biosynthesis chaperone 1276502 fliJ 1171376001257 fliJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis chaperone YP_007902350.1 1276059 D 1171376 CDS YP_007902351.1 482903791 1276499..1277716 1 NC_021151.1 COG3144 Flagellar hook-length control protein; flagellar hook-length control protein 1277716 1171376001258 STU288_06260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar hook-length control protein YP_007902351.1 1276499 D 1171376 CDS YP_007902352.1 482903792 1277821..1278288 1 NC_021151.1 COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 1278288 fliL 1171376001259 fliL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar basal body-associated protein FliL YP_007902352.1 1277821 D 1171376 CDS YP_007902353.1 482903793 1278293..1279297 1 NC_021151.1 COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 1279297 fliM 1171376001260 fliM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar motor switch protein FliM YP_007902353.1 1278293 D 1171376 CDS YP_007902354.1 482903794 1279294..1279707 1 NC_021151.1 COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 1279707 fliN 1171376001261 fliN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar motor switch protein FliN YP_007902354.1 1279294 D 1171376 CDS YP_007902355.1 482903795 1279710..1280084 1 NC_021151.1 COG3190 Flagellar biogenesis protein; flagellar biosynthesis protein FliO 1280084 1171376001262 STU288_06280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FliO YP_007902355.1 1279710 D 1171376 CDS YP_007902356.1 482903796 1280084..1280821 1 NC_021151.1 COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 1280821 fliP 1171376001263 fliP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FliP YP_007902356.1 1280084 D 1171376 CDS YP_007902357.1 482903797 1280831..1281100 1 NC_021151.1 COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 1281100 fliQ 1171376001264 fliQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FliQ YP_007902357.1 1280831 D 1171376 CDS YP_007902358.1 482903798 1281109..1281903 1 NC_021151.1 COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 1281903 fliR 1171376001265 fliR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar biosynthesis protein FliR YP_007902358.1 1281109 D 1171376 CDS YP_007902359.1 482903799 1282185..1282808 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; colanic acid capsular biosynthesis activation protein A 1282808 rcsA 1171376001266 rcsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid capsular biosynthesis activation protein A YP_007902359.1 1282185 D 1171376 CDS YP_007902360.1 482903800 complement(1282847..1283041) 1 NC_021151.1 hypothetical protein 1283041 1171376001267 STU288_06305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902360.1 1282847 R 1171376 CDS YP_007902361.1 482903801 1283170..1283397 1 NC_021151.1 hypothetical protein 1283397 1171376001268 STU288_06310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902361.1 1283170 D 1171376 CDS YP_007902362.1 482903802 1283707..1284522 1 NC_021151.1 COG3769 Predicted hydrolase (HAD superfamily); mannosyl-3-phosphoglycerate phosphatase 1284522 1171376001269 STU288_06315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannosyl-3-phosphoglycerate phosphatase YP_007902362.1 1283707 D 1171376 CDS YP_007902363.1 482903803 complement(1284501..1286213) 1 NC_021151.1 COG2199 FOG: GGDEF domain; diguanylate cyclase YedQ 1286213 1171376001270 STU288_06320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diguanylate cyclase YedQ YP_007902363.1 1284501 R 1171376 CDS YP_007902364.1 482903804 complement(1286378..1286563) 1 NC_021151.1 COG5475 Uncharacterized small protein; hypothetical protein 1286563 1171376001271 STU288_06325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902364.1 1286378 R 1171376 CDS YP_007902365.1 482903805 complement(1286640..1287551) 1 NC_021151.1 COG2354 Uncharacterized protein conserved in bacteria; hypothetical protein 1287551 1171376001272 STU288_06330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902365.1 1286640 R 1171376 CDS YP_007902366.1 482903806 1287727..1288647 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; DMT superfamily transporter inner membrane protein 1288647 1171376001273 STU288_06335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DMT superfamily transporter inner membrane protein YP_007902366.1 1287727 D 1171376 CDS YP_007902367.1 482903807 complement(1288636..1289106) 1 NC_021151.1 COG3727 DNA G:T-mismatch repair endonuclease; very short patch repair endonuclease 1289106 1171376001274 STU288_06340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 very short patch repair endonuclease YP_007902367.1 1288636 R 1171376 CDS YP_007902368.1 482903808 complement(1289087..1290517) 1 NC_021151.1 COG0270 Site-specific DNA methylase; DNA cytosine methylase 1290517 1171376001275 STU288_06345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA cytosine methylase YP_007902368.1 1289087 R 1171376 CDS YP_007902369.1 482903809 complement(1290591..1291286) 1 NC_021151.1 COG1418 Predicted HD superfamily hydrolase; hydrolase 1291286 1171376001276 STU288_06350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007902369.1 1290591 R 1171376 CDS YP_007902370.1 482903810 complement(1291378..1291677) 1 NC_021151.1 putative inner membrane protein 1291677 1171376001277 STU288_06355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902370.1 1291378 R 1171376 CDS YP_007902371.1 482903811 1291753..1291884 1 NC_021151.1 hypothetical protein 1291884 1171376001278 STU288_06360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902371.1 1291753 D 1171376 CDS YP_007902372.1 482903812 1292327..1293523 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane protein S1 1293523 1171376001279 STU288_06365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein S1 YP_007902372.1 1292327 D 1171376 CDS YP_007902373.1 482903813 complement(1293983..1294195) 1 NC_021151.1 COG1278 Cold shock proteins; cold shock protein 1294195 1171376001280 STU288_06370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cold shock protein YP_007902373.1 1293983 R 1171376 CDS YP_007902374.1 482903814 complement(1294650..1295918) 1 NC_021151.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 1295918 umuC 1171376001281 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase V subunit UmuC YP_007902374.1 1294650 R 1171376 CDS YP_007902375.1 482903815 complement(1295921..1296340) 1 NC_021151.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD 1296340 1171376001282 STU288_06380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase V subunit UmuD YP_007902375.1 1295921 R 1171376 CDS YP_007902376.1 482903816 complement(1296467..1296628) 1 NC_021151.1 hypothetical protein 1296628 1171376001283 STU288_06385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902376.1 1296467 R 1171376 CDS YP_007902377.1 482903817 1297109..1297906 1 NC_021151.1 COG3228 Uncharacterized protein conserved in bacteria; DgsA anti-repressor MtfA 1297906 1171376001285 STU288_06390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DgsA anti-repressor MtfA YP_007902377.1 1297109 D 1171376 CDS YP_007902378.1 482903818 1298196..1298366 1 NC_021151.1 COG0582 Integrase; hypothetical protein 1298366 1171376001287 STU288_06395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902378.1 1298196 D 1171376 CDS YP_007902379.1 482903819 1298278..1298568 1 NC_021151.1 COG0582 Integrase; hypothetical protein 1298568 1171376001288 STU288_06400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902379.1 1298278 D 1171376 CDS YP_007902380.1 482903820 complement(1298575..1298679) 1 NC_021151.1 hypothetical protein 1298679 1171376001289 STU288_06405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902380.1 1298575 R 1171376 CDS YP_007902381.1 482903821 1299216..1299689 1 NC_021151.1 Putative protease 1299689 1171376001291 STU288_06410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative protease YP_007902381.1 1299216 D 1171376 CDS YP_007902382.1 482903822 1300164..1300862 1 NC_021151.1 COG0582 Integrase; putative branched chain amino acid transport protein 1300862 1171376001292 STU288_06415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative branched chain amino acid transport protein YP_007902382.1 1300164 D 1171376 CDS YP_007902383.1 482903823 1300747..1300995 1 NC_021151.1 COG3335 Transposase and inactivated derivatives; transposase 1300995 1171376001293 STU288_06420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007902383.1 1300747 D 1171376 CDS YP_007902384.1 482903824 1301205..1303373 1 NC_021151.1 COG2849 Uncharacterized protein conserved in bacteria; tetratricopeptide repeat protein 1303373 1171376001294 STU288_06425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetratricopeptide repeat protein YP_007902384.1 1301205 D 1171376 CDS YP_007902385.1 482903825 1303430..1305160 1 NC_021151.1 hypothetical protein 1305160 1171376001295 STU288_06430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902385.1 1303430 D 1171376 CDS YP_007902386.1 482903826 complement(1305218..1305322) 1 NC_021151.1 COG1666 Uncharacterized protein conserved in bacteria; hypothetical protein 1305322 1171376001296 STU288_06435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902386.1 1305218 R 1171376 CDS YP_007902387.1 482903827 1305370..1305543 1 NC_021151.1 hypothetical protein 1305543 1171376001297 STU288_06440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902387.1 1305370 D 1171376 CDS YP_007902388.1 482903828 1305635..1305784 1 NC_021151.1 hypothetical protein 1305784 1171376001298 STU288_06445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902388.1 1305635 D 1171376 CDS YP_007902389.1 482903829 complement(1306065..1307519) 1 NC_021151.1 COG0775 Nucleoside phosphorylase; AMP nucleosidase 1307519 1171376001299 STU288_06450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AMP nucleosidase YP_007902389.1 1306065 R 1171376 CDS YP_007902390.1 482903830 complement(1307715..1308041) 1 NC_021151.1 putative cytoplasmic protein 1308041 1171376001300 STU288_06455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902390.1 1307715 R 1171376 CDS YP_007902391.1 482903831 complement(1309135..1310592) 1 NC_021151.1 COG0534 Na+-driven multidrug efflux pump; MATE family multidrug exporter 1310592 1171376001302 STU288_06460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MATE family multidrug exporter YP_007902391.1 1309135 R 1171376 CDS YP_007902392.1 482903832 complement(1311054..1311983) 1 NC_021151.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 1311983 1171376001304 STU288_06465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L,D-transpeptidase YP_007902392.1 1311054 R 1171376 CDS YP_007902393.1 482903833 complement(1312061..1313131) 1 NC_021151.1 COG2038 NaMN:DMB phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1313131 cobT 1171376001305 cobT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_007902393.1 1312061 R 1171376 CDS YP_007902394.1 482903834 complement(1313158..1313901) 1 NC_021151.1 COG0368 Cobalamin-5-phosphate synthase; cobalamin synthase 1313901 cobS 1171376001306 cobS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalamin synthase YP_007902394.1 1313158 R 1171376 CDS YP_007902395.1 482903835 complement(1313898..1314443) 1 NC_021151.1 COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1314443 cobU 1171376001307 cobU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_007902395.1 1313898 R 1171376 CDS YP_007902396.1 482903836 complement(1314440..1315960) 1 NC_021151.1 COG1492 Cobyric acid synthase; cobyric acid synthase 1315960 1171376001308 STU288_06485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobyric acid synthase YP_007902396.1 1314440 R 1171376 CDS YP_007902397.1 482903837 complement(1315957..1316772) 1 NC_021151.1 COG1122 ABC-type cobalt transport system, ATPase component; cobalt transporter ATP-binding subunit 1316772 cbiO 1171376001309 cbiO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt transporter ATP-binding subunit YP_007902397.1 1315957 R 1171376 CDS YP_007902398.1 482903838 complement(1316781..1317458) 1 NC_021151.1 COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport protein CbiQ 1317458 1171376001310 STU288_06495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt transport protein CbiQ YP_007902398.1 1316781 R 1171376 CDS YP_007902399.1 482903839 complement(1317445..1317726) 1 NC_021151.1 COG1930 ABC-type cobalt transport system, periplasmic component; cobalt transport protein CbiN 1317726 1171376001311 STU288_06500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt transport protein CbiN YP_007902399.1 1317445 R 1171376 CDS YP_007902400.1 482903840 complement(1317728..1318465) 1 NC_021151.1 COG0310 ABC-type Co2+ transport system, permease component; cobalt transport protein CbiM 1318465 1171376001312 STU288_06505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt transport protein CbiM YP_007902400.1 1317728 R 1171376 CDS YP_007902401.1 482903841 complement(1318462..1319175) 1 NC_021151.1 COG2243 Precorrin-2 methylase; cobalt-precorrin-2 C(20)-methyltransferase 1319175 1171376001313 STU288_06510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-2 C(20)-methyltransferase YP_007902401.1 1318462 R 1171376 CDS YP_007902402.1 482903842 complement(1319172..1319966) 1 NC_021151.1 COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase; synthesis of vitamin B12 adenosyl cobalamide precursor 1319966 1171376001314 STU288_06515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 synthesis of vitamin B12 adenosyl cobalamide precursor YP_007902402.1 1319172 R 1171376 CDS YP_007902403.1 482903843 complement(1319969..1320760) 1 NC_021151.1 COG2099 Precorrin-6x reductase; cobalt-precorrin-6x reductase 1320760 1171376001315 STU288_06520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-6x reductase YP_007902403.1 1319969 R 1171376 CDS YP_007902404.1 482903844 complement(1320757..1321482) 1 NC_021151.1 COG1010 Precorrin-3B methylase; cobalt-precorrin-3B C(17)-methyltransferase 1321482 cbiH 1171376001316 cbiH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-3B C(17)-methyltransferase YP_007902404.1 1320757 R 1171376 CDS YP_007902405.1 482903845 complement(1321482..1322537) 1 NC_021151.1 COG2073 Cobalamin biosynthesis protein CbiG; cobalamin biosynthesis protein CbiG 1322537 1171376001317 STU288_06530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalamin biosynthesis protein CbiG YP_007902405.1 1321482 R 1171376 CDS YP_007902406.1 482903846 complement(1322518..1323291) 1 NC_021151.1 COG2875 Precorrin-4 methylase; cobalt-precorrin-4 C(11)-methyltransferase 1323291 cbiF 1171376001318 cbiF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-4 C(11)-methyltransferase YP_007902406.1 1322518 R 1171376 CDS YP_007902407.1 482903847 complement(1323275..1323853) 1 NC_021151.1 COG2242 Precorrin-6B methylase 2; cobalt-precorrin-6Y C(15)-methyltransferase 1323853 1171376001319 STU288_06540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-6Y C(15)-methyltransferase YP_007902407.1 1323275 R 1171376 CDS YP_007902408.1 482903848 complement(1323843..1324448) 1 NC_021151.1 COG2241 Precorrin-6B methylase 1; cobalt-precorrin-6Y C(5)-methyltransferase 1324448 1171376001320 STU288_06545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-6Y C(5)-methyltransferase YP_007902408.1 1323843 R 1171376 CDS YP_007902409.1 482903849 complement(1324442..1325581) 1 NC_021151.1 COG1903 Cobalamin biosynthesis protein CbiD; cobalt-precorrin-6A synthase 1325581 cbiD 1171376001321 cbiD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-6A synthase YP_007902409.1 1324442 R 1171376 CDS YP_007902410.1 482903850 complement(1325581..1326213) 1 NC_021151.1 COG2082 Precorrin isomerase; cobalt-precorrin-8X methylmutase 1326213 cbiC 1171376001322 cbiC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalt-precorrin-8X methylmutase YP_007902410.1 1325581 R 1171376 CDS YP_007902411.1 482903851 complement(1326224..1327183) 1 NC_021151.1 COG1270 Cobalamin biosynthesis protein CobD/CbiB; cobalamin biosynthesis protein 1327183 1171376001323 STU288_06560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobalamin biosynthesis protein YP_007902411.1 1326224 R 1171376 CDS YP_007902412.1 482903852 complement(1327180..1328559) 1 NC_021151.1 COG1797 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1328559 1171376001324 STU288_06565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cobyrinic acid a,c-diamide synthase YP_007902412.1 1327180 R 1171376 CDS YP_007902413.1 482903853 complement(1329157..1330068) 1 NC_021151.1 COG4936 Predicted sensor domain; Regulatory protein pocR 1330068 1171376001325 STU288_06570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Regulatory protein pocR YP_007902413.1 1329157 R 1171376 CDS YP_007902414.1 482903854 complement(1330285..1331079) 1 NC_021151.1 COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); propanediol utilization propanediol diffusion facilitator 1331079 1171376001326 STU288_06575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization propanediol diffusion facilitator YP_007902414.1 1330285 R 1171376 CDS YP_007902415.1 482903855 1331604..1331888 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; hypothetical protein 1331888 1171376001327 STU288_06580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902415.1 1331604 D 1171376 CDS YP_007902416.1 482903856 1331885..1332697 1 NC_021151.1 COG4816 Ethanolamine utilization protein; propanediol utilization protein PduB 1332697 1171376001328 STU288_06585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein PduB YP_007902416.1 1331885 D 1171376 CDS YP_007902417.1 482903857 1332716..1334380 1 NC_021151.1 COG4909 Propanediol dehydratase, large subunit; propanediol dehydratase large subunit 1334380 pduC 1171376001329 pduC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol dehydratase large subunit YP_007902417.1 1332716 D 1171376 CDS YP_007902418.1 482903858 1334391..1335065 1 NC_021151.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; propanediol dehydratase medium subunit 1335065 pduD 1171376001330 pduD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol dehydratase medium subunit YP_007902418.1 1334391 D 1171376 CDS YP_007902419.1 482903859 1335080..1335601 1 NC_021151.1 COG4910 Propanediol dehydratase, small subunit; propanediol dehydratase small subunit 1335601 pduE 1171376001331 pduE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol dehydratase small subunit YP_007902419.1 1335080 D 1171376 CDS YP_007902420.1 482903860 1335611..1337443 1 NC_021151.1 propanediol utilization protein 1337443 1171376001332 STU288_06605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein YP_007902420.1 1335611 D 1171376 CDS YP_007902421.1 482903861 1337433..1337783 1 NC_021151.1 propanediol utilization protein 1337783 1171376001333 STU288_06610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein YP_007902421.1 1337433 D 1171376 CDS YP_007902422.1 482903862 1337802..1338077 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; hypothetical protein 1338077 1171376001334 STU288_06615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902422.1 1337802 D 1171376 CDS YP_007902423.1 482903863 1338102..1338563 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; polyhedral body protein 1338563 1171376001335 STU288_06620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polyhedral body protein YP_007902423.1 1338102 D 1171376 CDS YP_007902424.1 482903864 1338563..1339195 1 NC_021151.1 COG4869 Propanediol utilization protein; propanediol utilization phosphotransacylase 1339195 1171376001336 STU288_06625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization phosphotransacylase YP_007902424.1 1338563 D 1171376 CDS YP_007902425.1 482903865 1339192..1339683 1 NC_021151.1 propanediol utilization protein PduM 1339683 1171376001337 STU288_06630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein PduM YP_007902425.1 1339192 D 1171376 CDS YP_007902426.1 482903866 1339687..1339962 1 NC_021151.1 COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; Propanediol utilization polyhedral body protein PduN 1339962 1171376001338 STU288_06635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Propanediol utilization polyhedral body protein PduN YP_007902426.1 1339687 D 1171376 CDS YP_007902427.1 482903867 1339972..1340982 1 NC_021151.1 COG2096 Uncharacterized conserved protein; ATP:Cob(I)alamin adenosyltransferase 1340982 1171376001339 STU288_06640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP:Cob(I)alamin adenosyltransferase YP_007902427.1 1339972 D 1171376 CDS YP_007902428.1 482903868 1340979..1342373 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE 1342373 1171376001340 STU288_06645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldehyde dehydrogenase EutE YP_007902428.1 1340979 D 1171376 CDS YP_007902429.1 482903869 1342385..1343497 1 NC_021151.1 COG1454 Alcohol dehydrogenase, class IV; propanol dehydrogenase 1343497 1171376001341 STU288_06650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanol dehydrogenase YP_007902429.1 1342385 D 1171376 CDS YP_007902430.1 482903870 1343494..1344849 1 NC_021151.1 COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; Cob(III)alamin reductase @ Cob(II)alamin reductase 1344849 1171376001342 STU288_06655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cob(III)alamin reductase @ Cob(II)alamin reductase YP_007902430.1 1343494 D 1171376 CDS YP_007902431.1 482903871 1344852..1345406 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; Propanediol utilization polyhedral body protein PduT 1345406 1171376001343 STU288_06660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Propanediol utilization polyhedral body protein PduT YP_007902431.1 1344852 D 1171376 CDS YP_007902432.1 482903872 1345406..1345756 1 NC_021151.1 COG4810 Ethanolamine utilization protein; propanediol utilization polyhedral body protein PduU 1345756 1171376001344 STU288_06665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization polyhedral body protein PduU YP_007902432.1 1345406 D 1171376 CDS YP_007902433.1 482903873 1345761..1346213 1 NC_021151.1 COG4917 Ethanolamine utilization protein; propanediol utilization protein PduV 1346213 1171376001345 STU288_06670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein PduV YP_007902433.1 1345761 D 1171376 CDS YP_007902434.1 482903874 1346198..1347412 1 NC_021151.1 COG0282 Acetate kinase; propionate kinase 1347412 1171376001346 STU288_06675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propionate kinase YP_007902434.1 1346198 D 1171376 CDS YP_007902435.1 482903875 1347470..1348372 1 NC_021151.1 COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase; propanediol utilization protein 1348372 1171376001347 STU288_06680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propanediol utilization protein YP_007902435.1 1347470 D 1171376 CDS YP_007902436.1 482903876 complement(1348406..1348741) 1 NC_021151.1 COG2926 Uncharacterized protein conserved in bacteria; hypothetical protein 1348741 1171376001348 STU288_06685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902436.1 1348406 R 1171376 CDS YP_007902437.1 482903877 complement(1348986..1350044) 1 NC_021151.1 COG1289 Predicted membrane protein; inner membrane protein YeeA 1350044 1171376001349 STU288_06690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YeeA YP_007902437.1 1348986 R 1171376 CDS YP_007902438.1 482903878 complement(1350163..1350630) 1 NC_021151.1 COG3449 DNA gyrase inhibitor; DNA gyrase inhibitor 1350630 1171376001350 STU288_06695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA gyrase inhibitor YP_007902438.1 1350163 R 1171376 CDS YP_007902439.1 482903879 complement(1350783..1351949) 1 NC_021151.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase 1351949 dacD 1171376001351 dacD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine carboxypeptidase YP_007902439.1 1350783 R 1171376 CDS YP_007902440.1 482903880 complement(1352079..1352843) 1 NC_021151.1 COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); thiosulfate reductase cytochrome B subunit 1352843 1171376001352 STU288_06705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiosulfate reductase cytochrome B subunit YP_007902440.1 1352079 R 1171376 CDS YP_007902441.1 482903881 complement(1352840..1353418) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; (4Fe-4S)-binding protein 1353418 1171376001353 STU288_06710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 (4Fe-4S)-binding protein YP_007902441.1 1352840 R 1171376 CDS YP_007902442.1 482903882 complement(1353433..1355709) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; thiosulfate reductase PhsA 1355709 1171376001354 STU288_06715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiosulfate reductase PhsA YP_007902442.1 1353433 R 1171376 CDS YP_007902443.1 482903883 1356328..1358676 1 NC_021151.1 COG1357 Uncharacterized low-complexity proteins; E3 ubiquitin-protein ligase SopA 1358676 1171376001355 STU288_06720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 E3 ubiquitin-protein ligase SopA YP_007902443.1 1356328 D 1171376 CDS YP_007902444.1 482903884 1359019..1360449 1 NC_021151.1 COG2925 Exonuclease I; exonuclease I 1360449 sbcB 1171376001356 sbcB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease I YP_007902444.1 1359019 D 1171376 CDS YP_007902445.1 482903885 complement(1360585..1361943) 1 NC_021151.1 COG0531 Amino acid transporters; amino acid permease 1361943 1171376001357 STU288_06730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid permease YP_007902445.1 1360585 R 1171376 CDS YP_007902446.1 482903886 complement(1362229..1363143) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1363143 1171376001358 STU288_06735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007902446.1 1362229 R 1171376 CDS YP_007902447.1 482903887 complement(1363189..1364013) 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; UDP-glucose 4-epimerase UDP-galactose 4-epimerase 1364013 1171376001359 STU288_06740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-glucose 4-epimerase UDP-galactose 4-epimerase YP_007902447.1 1363189 R 1171376 CDS YP_007902448.1 482903888 1364373..1365272 1 NC_021151.1 COG0040 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 1365272 hisG 1171376001360 hisG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP phosphoribosyltransferase YP_007902448.1 1364373 D 1171376 CDS YP_007902449.1 482903889 1365493..1366437 1 NC_021151.1 COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; histidinol-phosphate aminotransferase 1366437 1171376001361 STU288_06750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidinol-phosphate aminotransferase YP_007902449.1 1365493 D 1171376 CDS YP_007902450.1 482903890 1366434..1367501 1 NC_021151.1 COG0241 Histidinol phosphatase and related phosphatases; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1367501 1171376001362 STU288_06755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_007902450.1 1366434 D 1171376 CDS YP_007902451.1 482903891 1367501..1368091 1 NC_021151.1 COG0118 Glutamine amidotransferase; imidazole glycerol phosphate synthase subunit HisH 1368091 hisH 1171376001363 hisH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 imidazole glycerol phosphate synthase subunit HisH YP_007902451.1 1367501 D 1171376 CDS YP_007902452.1 482903892 1368091..1368828 1 NC_021151.1 COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1368828 1171376001364 STU288_06765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_007902452.1 1368091 D 1171376 CDS YP_007902453.1 482903893 1368810..1369586 1 NC_021151.1 COG0107 Imidazoleglycerol-phosphate synthase; imidazole glycerol phosphate synthase subunit HisF 1369586 1171376001365 STU288_06770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 imidazole glycerol phosphate synthase subunit HisF YP_007902453.1 1368810 D 1171376 CDS YP_007902454.1 482903894 1369580..1370191 1 NC_021151.1 COG0139 Phosphoribosyl-AMP cyclohydrolase; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1370191 1171376001366 STU288_06775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_007902454.1 1369580 D 1171376 CDS YP_007902455.1 482903895 complement(1370272..1371255) 1 NC_021151.1 COG3765 Chain length determinant protein; chain length determinant protein WzzB 1371255 1171376001367 STU288_06780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chain length determinant protein WzzB YP_007902455.1 1370272 R 1171376 CDS YP_007902456.1 482903896 complement(1371398..1372564) 1 NC_021151.1 COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 1372564 1171376001368 STU288_06785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-glucose 6-dehydrogenase YP_007902456.1 1371398 R 1171376 CDS YP_007902457.1 482903897 complement(1372801..1374207) 1 NC_021151.1 COG0362 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase 1374207 1171376001369 STU288_06790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phosphogluconate dehydrogenase YP_007902457.1 1372801 R 1171376 CDS YP_007902458.1 482903898 complement(1374371..1375801) 1 NC_021151.1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis; undecaprenyl-phosphate galactose phosphotransferase 1375801 1171376001370 STU288_06795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl-phosphate galactose phosphotransferase YP_007902458.1 1374371 R 1171376 CDS YP_007902459.1 482903899 complement(1375873..1377306) 1 NC_021151.1 COG1109 Phosphomannomutase; phosphomannomutase 1377306 1171376001371 STU288_06800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphomannomutase YP_007902459.1 1375873 R 1171376 CDS YP_007902460.1 482903900 complement(1377293..1378732) 1 NC_021151.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase 1378732 1171376001372 STU288_06805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannose-1-phosphate guanylyltransferase YP_007902460.1 1377293 R 1171376 CDS YP_007902461.1 482903901 complement(1378733..1379677) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; O antigen biosynthesis rhamnosyltransferase rfbN 1379677 1171376001373 STU288_06810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O antigen biosynthesis rhamnosyltransferase rfbN YP_007902461.1 1378733 R 1171376 CDS YP_007902462.1 482903902 complement(1379678..1380739) 1 NC_021151.1 COG0438 Glycosyltransferase; mannosyl transferase 1380739 1171376001374 STU288_06815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannosyl transferase YP_007902462.1 1379678 R 1171376 CDS YP_007902463.1 482903903 complement(1381059..1382060) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; Glycosyl transferase family 2 1382060 1171376001375 STU288_06820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glycosyl transferase family 2 YP_007902463.1 1381059 R 1171376 CDS YP_007902464.1 482903904 complement(1382065..1383243) 1 NC_021151.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen transporter 1383243 1171376001376 STU288_06825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen transporter YP_007902464.1 1382065 R 1171376 CDS YP_007902465.1 482903905 complement(1383439..1384338) 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-abequose synthase 1384338 1171376001377 STU288_06830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CDP-abequose synthase YP_007902465.1 1383439 R 1171376 CDS YP_007902466.1 482903906 complement(1384366..1385679) 1 NC_021151.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; lipopolysaccharide biosynthesis protein RfbH 1385679 1171376001378 STU288_06835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide biosynthesis protein RfbH YP_007902466.1 1384366 R 1171376 CDS YP_007902467.1 482903907 complement(1385706..1386785) 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-glucose 4,6-dehydratase 1386785 1171376001379 STU288_06840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CDP-glucose 4,6-dehydratase YP_007902467.1 1385706 R 1171376 CDS YP_007902468.1 482903908 complement(1386790..1387563) 1 NC_021151.1 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); glucose-1-phosphate cytidylyltransferase 1387563 1171376001380 STU288_06845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-1-phosphate cytidylyltransferase YP_007902468.1 1386790 R 1171376 CDS YP_007902469.1 482903909 complement(1387560..1388552) 1 NC_021151.1 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; CDP-6-deoxy-delta-3,4-glucoseen reductase 1388552 1171376001381 STU288_06850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_007902469.1 1387560 R 1171376 CDS YP_007902470.1 482903910 complement(1388558..1389106) 1 NC_021151.1 COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase 1389106 1171376001382 STU288_06855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dTDP-4-dehydrorhamnose 3,5-epimerase YP_007902470.1 1388558 R 1171376 CDS YP_007902471.1 482903911 complement(1389110..1389988) 1 NC_021151.1 COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase RfbA 1389988 1171376001383 STU288_06860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-1-phosphate thymidylyltransferase RfbA YP_007902471.1 1389110 R 1171376 CDS YP_007902472.1 482903912 complement(1390036..1390935) 1 NC_021151.1 COG1091 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1390935 1171376001384 STU288_06865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dTDP-4-dehydrorhamnose reductase YP_007902472.1 1390036 R 1171376 CDS YP_007902473.1 482903913 complement(1390935..1392020) 1 NC_021151.1 COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6 dehydratase 1392020 1171376001385 STU288_06870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dTDP-glucose 4,6 dehydratase YP_007902473.1 1390935 R 1171376 CDS YP_007902474.1 482903914 complement(1392397..1393290) 1 NC_021151.1 COG1210 UDP-glucose pyrophosphorylase; GalU regulator GalF 1393290 1171376001386 STU288_06875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GalU regulator GalF YP_007902474.1 1392397 R 1171376 CDS YP_007902475.1 482903915 complement(1393468..1394871) 1 NC_021151.1 colanic acid biosynthesis protein 1394871 wcaM 1171376001387 wcaM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid biosynthesis protein YP_007902475.1 1393468 R 1171376 CDS YP_007902476.1 482903916 complement(1394882..1396102) 1 NC_021151.1 COG0438 Glycosyltransferase; colanic acid biosynthesis glycosyltransferase WcaL 1396102 1171376001388 STU288_06885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid biosynthesis glycosyltransferase WcaL YP_007902476.1 1394882 R 1171376 CDS YP_007902477.1 482903917 complement(1396099..1397379) 1 NC_021151.1 COG2327 Uncharacterized conserved protein; colanic acid biosynthesis protein 1397379 1171376001389 STU288_06890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid biosynthesis protein YP_007902477.1 1396099 R 1171376 CDS YP_007902478.1 482903918 complement(1397401..1398879) 1 NC_021151.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; colanic acid exporter 1398879 1171376001390 STU288_06895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid exporter YP_007902478.1 1397401 R 1171376 CDS YP_007902479.1 482903919 complement(1399012..1400406) 1 NC_021151.1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis; UDP-glucose lipid carrier transferase 1400406 1171376001391 STU288_06900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-glucose lipid carrier transferase YP_007902479.1 1399012 R 1171376 CDS YP_007902480.1 482903920 complement(1400460..1401830) 1 NC_021151.1 COG1109 Phosphomannomutase; phosphomannomutase CpsG 1401830 1171376001392 STU288_06905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphomannomutase CpsG YP_007902480.1 1400460 R 1171376 CDS YP_007902481.1 482903921 complement(1401941..1403377) 1 NC_021151.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase 1403377 cpsB 1171376001393 cpsB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannose-1-phosphate guanyltransferase YP_007902481.1 1401941 R 1171376 CDS YP_007902482.1 482903922 complement(1403380..1404603) 1 NC_021151.1 COG0438 Glycosyltransferase; glycosyl transferase 1404603 1171376001394 STU288_06915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase YP_007902482.1 1403380 R 1171376 CDS YP_007902483.1 482903923 complement(1404600..1405073) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose mannosyl hydrolase NudD 1405073 1171376001395 STU288_06920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GDP-mannose mannosyl hydrolase NudD YP_007902483.1 1404600 R 1171376 CDS YP_007902484.1 482903924 complement(1405076..1406041) 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase 1406041 1171376001396 STU288_06925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GDP-fucose synthetase YP_007902484.1 1405076 R 1171376 CDS YP_007902485.1 482903925 complement(1406044..1407165) 1 NC_021151.1 COG1089 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 1407165 1171376001397 STU288_06930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GDP-mannose 4,6-dehydratase YP_007902485.1 1406044 R 1171376 CDS YP_007902486.1 482903926 complement(1407189..1407743) 1 NC_021151.1 COG0110 Acetyltransferase (isoleucine patch superfamily); acyl transferase 1407743 1171376001398 STU288_06935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl transferase YP_007902486.1 1407189 R 1171376 CDS YP_007902487.1 482903927 complement(1407759..1408505) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase 1408505 1171376001399 STU288_06940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase YP_007902487.1 1407759 R 1171376 CDS YP_007902488.1 482903928 complement(1408518..1409732) 1 NC_021151.1 colanic acid biosynthesis protein 1409732 wcaD 1171376001400 wcaD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colanic acid biosynthesis protein YP_007902488.1 1408518 R 1171376 CDS YP_007902489.1 482903929 complement(1409707..1410924) 1 NC_021151.1 COG0438 Glycosyltransferase; glycosyl transferase 1410924 1171376001401 STU288_06950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase YP_007902489.1 1409707 R 1171376 CDS YP_007902490.1 482903930 complement(1410921..1411409) 1 NC_021151.1 COG1045 Serine acetyltransferase; acyl transferase 1411409 1171376001402 STU288_06955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl transferase YP_007902490.1 1410921 R 1171376 CDS YP_007902491.1 482903931 complement(1411412..1412254) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase 1412254 1171376001403 STU288_06960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase YP_007902491.1 1411412 R 1171376 CDS YP_007902492.1 482903932 complement(1412341..1414500) 1 NC_021151.1 COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; tyrosine kinase 1414500 1171376001404 STU288_06965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tyrosine kinase YP_007902492.1 1412341 R 1171376 CDS YP_007902493.1 482903933 complement(1414497..1414946) 1 NC_021151.1 COG0394 Protein-tyrosine-phosphatase; tyrosine phosphatase 1414946 1171376001405 STU288_06970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tyrosine phosphatase YP_007902493.1 1414497 R 1171376 CDS YP_007902494.1 482903934 complement(1414952..1416091) 1 NC_021151.1 COG1596 Periplasmic protein involved in polysaccharide export; polysaccharide export protein Wza 1416091 1171376001406 STU288_06975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polysaccharide export protein Wza YP_007902494.1 1414952 R 1171376 CDS YP_007902495.1 482903935 1416766..1418346 1 NC_021151.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; inner membrane protein 1418346 1171376001407 STU288_06980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007902495.1 1416766 D 1171376 CDS YP_007902496.1 482903936 complement(1418432..1420288) 1 NC_021151.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis; assembly protein 1420288 1171376001408 STU288_06985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 assembly protein YP_007902496.1 1418432 R 1171376 CDS YP_007902497.1 482903937 complement(1420327..1420908) 1 NC_021151.1 COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase 1420908 dcd 1171376001409 dcd Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxycytidine triphosphate deaminase YP_007902497.1 1420327 R 1171376 CDS YP_007902498.1 482903938 complement(1420999..1421640) 1 NC_021151.1 COG0572 Uridine kinase; uridine/cytidine kinase 1421640 1171376001410 STU288_06995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uridine/cytidine kinase YP_007902498.1 1420999 R 1171376 CDS YP_007902499.1 482903939 complement(1421716..1421886) 1 NC_021151.1 hypothetical protein 1421886 1171376001411 STU288_07000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902499.1 1421716 R 1171376 CDS YP_007902500.1 482903940 1421971..1424961 1 NC_021151.1 COG2202 FOG: PAS/PAC domain; PAS domain-containing protein 1424961 1171376001412 STU288_07005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PAS domain-containing protein YP_007902500.1 1421971 D 1171376 CDS YP_007902501.1 482903941 complement(1424929..1425798) 1 NC_021151.1 COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; 3-methyl-adenine DNA glycosylase II 1425798 1171376001413 STU288_07010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-methyl-adenine DNA glycosylase II YP_007902501.1 1424929 R 1171376 CDS YP_007902502.1 482903942 1425932..1427284 1 NC_021151.1 COG0443 Molecular chaperone; chaperone 1427284 1171376001414 STU288_07015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone YP_007902502.1 1425932 D 1171376 CDS YP_007902503.1 482903943 1427725..1428966 1 NC_021151.1 COG0845 Membrane-fusion protein; multidrug efflux system subunit MdtA 1428966 1171376001415 STU288_07020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system subunit MdtA YP_007902503.1 1427725 D 1171376 CDS YP_007902504.1 482903944 1428966..1432088 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtB 1432088 1171376001416 STU288_07025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system subunit MdtB YP_007902504.1 1428966 D 1171376 CDS YP_007902505.1 482903945 1432089..1435169 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtC 1435169 1171376001417 STU288_07030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system subunit MdtC YP_007902505.1 1432089 D 1171376 CDS YP_007902506.1 482903946 1435166..1436578 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transporter 1436578 1171376001418 STU288_07035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007902506.1 1435166 D 1171376 CDS YP_007902507.1 482903947 1436578..1437981 1 NC_021151.1 COG0642 Signal transduction histidine kinase; signal transduction histidine-protein kinase BaeS 1437981 1171376001419 STU288_07040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 signal transduction histidine-protein kinase BaeS YP_007902507.1 1436578 D 1171376 CDS YP_007902508.1 482903948 1437978..1438700 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BaeR 1438700 1171376001420 STU288_07045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator BaeR YP_007902508.1 1437978 D 1171376 CDS YP_007902509.1 482903949 1438969..1440171 1 NC_021151.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; hypothetical protein 1440171 1171376001421 STU288_07050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902509.1 1438969 D 1171376 CDS YP_007902510.1 482903950 1440171..1440887 1 NC_021151.1 hypothetical protein 1440887 1171376001422 STU288_07055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902510.1 1440171 D 1171376 CDS YP_007902511.1 482903951 1440898..1443009 1 NC_021151.1 putative inner membrane protein 1443009 1171376001423 STU288_07060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902511.1 1440898 D 1171376 CDS YP_007902512.1 482903952 1443125..1444486 1 NC_021151.1 COG0826 Collagenase and related proteases; protease 1444486 1171376001424 STU288_07065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease YP_007902512.1 1443125 D 1171376 CDS YP_007902513.1 482903953 1445093..1445983 1 NC_021151.1 type III secretion system protein 1445983 1171376001425 STU288_07070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein YP_007902513.1 1445093 D 1171376 CDS YP_007902514.1 482903954 complement(1446019..1446435) 1 NC_021151.1 putative cytoplasmic protein 1446435 1171376001426 STU288_07075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902514.1 1446019 R 1171376 CDS YP_007902515.1 482903955 1447454..1448353 1 NC_021151.1 COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; lipid kinase 1448353 1171376001427 STU288_07080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid kinase YP_007902515.1 1447454 D 1171376 CDS YP_007902516.1 482903956 complement(1448406..1449458) 1 NC_021151.1 COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; fructose-bisphosphate aldolase 1449458 1171376001428 STU288_07085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-bisphosphate aldolase YP_007902516.1 1448406 R 1171376 CDS YP_007902517.1 482903957 1449712..1450983 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Putative nucleoside transporter YegT 1450983 1171376001429 STU288_07090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative nucleoside transporter YegT YP_007902517.1 1449712 D 1171376 CDS YP_007902518.1 482903958 1450980..1451984 1 NC_021151.1 COG1397 ADP-ribosylglycohydrolase; [Protein ADP-ribosylarginine] hydrolase-like protein 1 ADP-ribosylhydrolase 2 1451984 1171376001430 STU288_07095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 [Protein ADP-ribosylarginine] hydrolase-like protein 1 ADP-ribosylhydrolase 2 YP_007902518.1 1450980 D 1171376 CDS YP_007902519.1 482903959 1451981..1452946 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; sugar kinase 1452946 1171376001431 STU288_07100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar kinase YP_007902519.1 1451981 D 1171376 CDS YP_007902520.1 482903960 complement(1452920..1453666) 1 NC_021151.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 1453666 1171376001432 STU288_07105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007902520.1 1452920 R 1171376 CDS YP_007902521.1 482903961 complement(1453702..1454502) 1 NC_021151.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase 1454502 1171376001433 STU288_07110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase YP_007902521.1 1453702 R 1171376 CDS YP_007902522.1 482903962 complement(1454489..1455286) 1 NC_021151.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase 1455286 1171376001434 STU288_07115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxyethylthiazole kinase YP_007902522.1 1454489 R 1171376 CDS YP_007902523.1 482903963 1455696..1456010 1 NC_021151.1 COG5455 Predicted integral membrane protein; hypothetical protein 1456010 1171376001435 STU288_07120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902523.1 1455696 D 1171376 CDS YP_007902524.1 482903964 complement(1456273..1457280) 1 NC_021151.1 fimbrial-like adhesin protein StcD 1457280 1171376001436 STU288_07125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial-like adhesin protein StcD YP_007902524.1 1456273 R 1171376 CDS YP_007902525.1 482903965 complement(1457296..1459785) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein 1459785 1171376001437 STU288_07130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein YP_007902525.1 1457296 R 1171376 CDS YP_007902526.1 482903966 complement(1459799..1460482) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone protein StcB 1460482 1171376001438 STU288_07135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial assembly chaperone protein StcB YP_007902526.1 1459799 R 1171376 CDS YP_007902527.1 482903967 complement(1460538..1461068) 1 NC_021151.1 fimbrial chaperone protein 1461068 1171376001439 STU288_07140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein YP_007902527.1 1460538 R 1171376 CDS YP_007902528.1 482903968 complement(1461347..1461628) 1 NC_021151.1 hypothetical protein 1461628 1171376001440 STU288_07145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902528.1 1461347 R 1171376 CDS YP_007902529.1 482903969 complement(1461906..1463015) 1 NC_021151.1 COG0489 ATPases involved in chromosome partitioning; antiporter inner membrane protein 1463015 1171376001441 STU288_07150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antiporter inner membrane protein YP_007902529.1 1461906 R 1171376 CDS YP_007902530.1 482903970 1463180..1465213 1 NC_021151.1 COG0143 Methionyl-tRNA synthetase; methionyl-tRNA ligase 1465213 metG 1171376001442 metG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionyl-tRNA ligase YP_007902530.1 1463180 D 1171376 CDS YP_007902531.1 482903971 1465454..1465912 1 NC_021151.1 COG4808 Uncharacterized protein conserved in bacteria; putative lipoprotein yehR Flags: Precursor 1465912 1171376001443 STU288_07160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein yehR Flags: Precursor YP_007902531.1 1465454 D 1171376 CDS YP_007902532.1 482903972 1466084..1466614 1 NC_021151.1 COG4808 Uncharacterized protein conserved in bacteria; putative lipoprotein 1466614 1171376001444 STU288_07165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein YP_007902532.1 1466084 D 1171376 CDS YP_007902533.1 482903973 complement(1466671..1467138) 1 NC_021151.1 COG4807 Uncharacterized protein conserved in bacteria; hypothetical protein 1467138 1171376001445 STU288_07170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902533.1 1466671 R 1171376 CDS YP_007902534.1 482903974 complement(1467185..1467904) 1 NC_021151.1 COG3279 Response regulator of the LytR/AlgR family; two-component response-regulatory protein YehT 1467904 1171376001446 STU288_07175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two-component response-regulatory protein YehT YP_007902534.1 1467185 R 1171376 CDS YP_007902535.1 482903975 complement(1467901..1469586) 1 NC_021151.1 COG3275 Putative regulator of cell autolysis; putative sensor kinase 1469586 1171376001447 STU288_07180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sensor kinase YP_007902535.1 1467901 R 1171376 CDS YP_007902536.1 482903976 1469809..1470540 1 NC_021151.1 COG0789 Predicted transcriptional regulators; transcriptional regulator MirA 1470540 1171376001448 STU288_07185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator MirA YP_007902536.1 1469809 D 1171376 CDS YP_007902537.1 482903977 1470600..1470707 1 NC_021151.1 hypothetical protein 1470707 1171376001449 STU288_07190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902537.1 1470600 D 1171376 CDS YP_007902538.1 482903978 complement(1470688..1471419) 1 NC_021151.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; putative permease transmembrane component 1471419 1171376001450 STU288_07195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease transmembrane component YP_007902538.1 1470688 R 1171376 CDS YP_007902539.1 482903979 complement(1471403..1472350) 1 NC_021151.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; Methionine import ATP-binding protein metN 1472350 1171376001451 STU288_07200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Methionine import ATP-binding protein metN YP_007902539.1 1471403 R 1171376 CDS YP_007902540.1 482903980 complement(1472343..1473512) 1 NC_021151.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; putative ABC-type proline/glycine betaine transport system permease component 1473512 1171376001452 STU288_07205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ABC-type proline/glycine betaine transport system permease component YP_007902540.1 1472343 R 1171376 CDS YP_007902541.1 482903981 complement(1473516..1474433) 1 NC_021151.1 COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); Osmoprotectant ABC transporter binding protein YehZ 1474433 1171376001453 STU288_07210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Osmoprotectant ABC transporter binding protein YehZ YP_007902541.1 1473516 R 1171376 CDS YP_007902542.1 482903982 complement(1474614..1476911) 1 NC_021151.1 COG1472 Beta-glucosidase-related glycosidases; beta-D-glucoside glucohydrolase 1476911 1171376001454 STU288_07215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 beta-D-glucoside glucohydrolase YP_007902542.1 1474614 R 1171376 CDS YP_007902543.1 482903983 1477178..1478908 1 NC_021151.1 COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 1478908 1171376001455 STU288_07220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-lactate dehydrogenase YP_007902543.1 1477178 D 1171376 CDS YP_007902544.1 482903984 complement(1478966..1479913) 1 NC_021151.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine endopeptidase 1479913 pbpG 1171376001456 pbpG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine endopeptidase YP_007902544.1 1478966 R 1171376 CDS YP_007902545.1 482903985 complement(1480079..1480666) 1 NC_021151.1 inner membrane protein 1480666 1171376001457 STU288_07230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007902545.1 1480079 R 1171376 CDS YP_007902546.1 482903986 1480825..1481394 1 NC_021151.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1481394 1171376001458 STU288_07235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902546.1 1480825 D 1171376 CDS YP_007902547.1 482903987 complement(1481443..1482204) 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 1482204 1171376001459 STU288_07240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007902547.1 1481443 R 1171376 CDS YP_007902548.1 482903988 complement(1482270..1483706) 1 NC_021151.1 COG1538 Outer membrane protein; multidrug resistance outer membrane protein MdtQ 1483706 1171376001460 STU288_07245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug resistance outer membrane protein MdtQ YP_007902548.1 1482270 R 1171376 CDS YP_007902549.1 482903989 1484024..1484107 1 NC_021151.1 hypothetical protein 1484107 1171376001461 STU288_07250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902549.1 1484024 D 1171376 CDS YP_007902550.1 482903990 complement(1484165..1485103) 1 NC_021151.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase C 1485103 1171376001462 STU288_07255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA-dihydrouridine synthase C YP_007902550.1 1484165 R 1171376 CDS YP_007902551.1 482903991 complement(1485212..1486405) 1 NC_021151.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; salicylate hydroxylase 1486405 1171376001463 STU288_07260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 salicylate hydroxylase YP_007902551.1 1485212 R 1171376 CDS YP_007902552.1 482903992 complement(1486420..1487064) 1 NC_021151.1 COG0625 Glutathione S-transferase; maleylacetoacetate isomerase 1487064 1171376001464 STU288_07265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maleylacetoacetate isomerase YP_007902552.1 1486420 R 1171376 CDS YP_007902553.1 482903993 complement(1487073..1487774) 1 NC_021151.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); Fumarylacetoacetate hydrolase domain-containing protein 1 1487774 1171376001465 STU288_07270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Fumarylacetoacetate hydrolase domain-containing protein 1 YP_007902553.1 1487073 R 1171376 CDS YP_007902554.1 482903994 complement(1487790..1488827) 1 NC_021151.1 COG3435 Gentisate 1,2-dioxygenase; gentisate 1,2-dioxygenase 1488827 1171376001466 STU288_07275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gentisate 1,2-dioxygenase YP_007902554.1 1487790 R 1171376 CDS YP_007902555.1 482903995 complement(1488839..1490197) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; n-hydroxybenzoate transporter 1490197 1171376001467 STU288_07280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 n-hydroxybenzoate transporter YP_007902555.1 1488839 R 1171376 CDS YP_007902556.1 482903996 1490323..1491231 1 NC_021151.1 COG0583 Transcriptional regulator; putative RuBisCO transcriptional regulator 1491231 1171376001468 STU288_07285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative RuBisCO transcriptional regulator YP_007902556.1 1490323 D 1171376 CDS YP_007902557.1 482903997 1491363..1491761 1 NC_021151.1 COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 1491761 1171376001469 STU288_07290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902557.1 1491363 D 1171376 CDS YP_007902558.1 482903998 1491758..1492453 1 NC_021151.1 COG1346 Putative effector of murein hydrolase; hypothetical protein 1492453 1171376001470 STU288_07295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902558.1 1491758 D 1171376 CDS YP_007902559.1 482903999 1492607..1493491 1 NC_021151.1 COG0295 Cytidine deaminase; cytidine deaminase 1493491 1171376001471 STU288_07300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytidine deaminase YP_007902559.1 1492607 D 1171376 CDS YP_007902560.1 482904000 1493668..1494387 1 NC_021151.1 COG2949 Uncharacterized membrane protein; vancomycin high temperature exclusion protein 1494387 1171376001472 STU288_07305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 vancomycin high temperature exclusion protein YP_007902560.1 1493668 D 1171376 CDS YP_007902561.1 482904001 1494390..1494629 1 NC_021151.1 hypothetical protein 1494629 1171376001473 STU288_07310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902561.1 1494390 D 1171376 CDS YP_007902562.1 482904002 1494834..1496075 1 NC_021151.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; dihydropyrimidine dehydrogenase subunit A 1496075 1171376001474 STU288_07315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropyrimidine dehydrogenase subunit A YP_007902562.1 1494834 D 1171376 CDS YP_007902563.1 482904003 1496069..1497304 1 NC_021151.1 COG0167 Dihydroorotate dehydrogenase; dihydropyrimidine dehydrogenase subunit B 1497304 1171376001475 STU288_07320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropyrimidine dehydrogenase subunit B YP_007902563.1 1496069 D 1171376 CDS YP_007902564.1 482904004 complement(1497379..1498389) 1 NC_021151.1 COG4211 ABC-type glucose/galactose transport system, permease component; beta-methylgalactoside transporter inner membrane component 1498389 mglC 1171376001476 mglC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 beta-methylgalactoside transporter inner membrane component YP_007902564.1 1497379 R 1171376 CDS YP_007902565.1 482904005 complement(1498405..1499925) 1 NC_021151.1 COG1129 ABC-type sugar transport system, ATPase component; galactose/methyl galaxtoside transporter ATP-binding protein 1499925 1171376001477 STU288_07330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactose/methyl galaxtoside transporter ATP-binding protein YP_007902565.1 1498405 R 1171376 CDS YP_007902566.1 482904006 complement(1500059..1501057) 1 NC_021151.1 COG1879 ABC-type sugar transport system, periplasmic component; methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB 1501057 1171376001478 STU288_07335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB YP_007902566.1 1500059 R 1171376 CDS YP_007902567.1 482904007 complement(1501556..1502578) 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalS 1502578 1171376001479 STU288_07340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator GalS YP_007902567.1 1501556 R 1171376 CDS YP_007902568.1 482904008 complement(1502728..1503870) 1 NC_021151.1 COG2311 Predicted membrane protein; hypothetical protein 1503870 1171376001480 STU288_07345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902568.1 1502728 R 1171376 CDS YP_007902569.1 482904009 complement(1503885..1504553) 1 NC_021151.1 COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 1504553 folE 1171376001481 folE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP cyclohydrolase I YP_007902569.1 1503885 R 1171376 CDS YP_007902570.1 482904010 1504883..1505740 1 NC_021151.1 COG0627 Predicted esterase; S-formylglutathione hydrolase 1505740 1171376001482 STU288_07355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-formylglutathione hydrolase YP_007902570.1 1504883 D 1171376 CDS YP_007902571.1 482904011 complement(1505729..1506118) 1 NC_021151.1 COG1396 Predicted transcriptional regulators; putative DNA-binding protein 1506118 1171376001483 STU288_07360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA-binding protein YP_007902571.1 1505729 R 1171376 CDS YP_007902572.1 482904012 complement(1506123..1507490) 1 NC_021151.1 COG1760 L-serine deaminase; L-serine dehydratase 1507490 1171376001484 STU288_07365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-serine dehydratase YP_007902572.1 1506123 R 1171376 CDS YP_007902573.1 482904013 1507707..1508594 1 NC_021151.1 COG0560 Phosphoserine phosphatase; hydrolase 1508594 1171376001485 STU288_07370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007902573.1 1507707 D 1171376 CDS YP_007902574.1 482904014 1508627..1509949 1 NC_021151.1 COG2271 Sugar phosphate permease; Glycerol-3-phosphate transporter G-3-P transporter 1509949 1171376001486 STU288_07375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glycerol-3-phosphate transporter G-3-P transporter YP_007902574.1 1508627 D 1171376 CDS YP_007902575.1 482904015 complement(1509993..1511984) 1 NC_021151.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA 1511984 1171376001487 STU288_07380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 catecholate siderophore receptor CirA YP_007902575.1 1509993 R 1171376 CDS YP_007902576.1 482904016 complement(1512330..1513799) 1 NC_021151.1 COG0833 Amino acid transporters; lysine transporter 1513799 1171376001488 STU288_07385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysine transporter YP_007902576.1 1512330 R 1171376 CDS YP_007902577.1 482904017 complement(1513989..1514852) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 1514852 1171376001489 STU288_07390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007902577.1 1513989 R 1171376 CDS YP_007902578.1 482904018 1514973..1516022 1 NC_021151.1 COG2855 Predicted membrane protein; putative inner membrane protein 1516022 1171376001490 STU288_07395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902578.1 1514973 D 1171376 CDS YP_007902579.1 482904019 1516101..1516958 1 NC_021151.1 COG0648 Endonuclease IV; endonuclease IV 1516958 1171376001491 STU288_07400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease IV YP_007902579.1 1516101 D 1171376 CDS YP_007902580.1 482904020 complement(1517023..1518711) 1 NC_021151.1 COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunits IIBC 1518711 1171376001492 STU288_07405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose-specific transporter subunits IIBC YP_007902580.1 1517023 R 1171376 CDS YP_007902581.1 482904021 complement(1518728..1519666) 1 NC_021151.1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase 1519666 fruK 1171376001493 fruK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1-phosphofructokinase YP_007902581.1 1518728 R 1171376 CDS YP_007902582.1 482904022 complement(1519666..1520796) 1 NC_021151.1 COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1520796 1171376001494 STU288_07415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_007902582.1 1519666 R 1171376 CDS YP_007902583.1 482904023 complement(1520864..1520971) 1 NC_021151.1 hypothetical protein 1520971 1171376001495 STU288_07420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902583.1 1520864 R 1171376 CDS YP_007902584.1 482904024 1521165..1522346 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter B 1522346 1171376001496 STU288_07425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar efflux transporter B YP_007902584.1 1521165 D 1171376 CDS YP_007902585.1 482904025 complement(1522411..1523076) 1 NC_021151.1 COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; hypothetical protein 1523076 1171376001497 STU288_07430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902585.1 1522411 R 1171376 CDS YP_007902586.1 482904026 complement(1523588..1523866) 1 NC_021151.1 COG0727 Predicted Fe-S-cluster oxidoreductase; protein YeiW 1523866 1171376001498 STU288_07435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein YeiW YP_007902586.1 1523588 R 1171376 CDS YP_007902587.1 482904027 1524166..1524738 1 NC_021151.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 1524738 1171376001499 STU288_07440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor P YP_007902587.1 1524166 D 1171376 CDS YP_007902588.1 482904028 1524951..1525937 1 NC_021151.1 COG0523 Putative GTPases (G3E family); hypothetical protein 1525937 1171376001500 STU288_07445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902588.1 1524951 D 1171376 CDS YP_007902589.1 482904029 1525967..1526686 1 NC_021151.1 COG0671 Membrane-associated phospholipid phosphatase; Inner membrane protein yeiU 1526686 1171376001501 STU288_07450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yeiU YP_007902589.1 1525967 D 1171376 CDS YP_007902590.1 482904030 1527100..1527672 1 NC_021151.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); outer membrane lipoprotein 1527672 spr 1171376001502 spr Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007902590.1 1527100 D 1171376 CDS YP_007902591.1 482904031 1527998..1529554 1 NC_021151.1 COG2200 FOG: EAL domain; phage resistance protein 1529554 1171376001503 STU288_07460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage resistance protein YP_007902591.1 1527998 D 1171376 CDS YP_007902592.1 482904032 1529661..1531466 1 NC_021151.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; microcin C ABC transporter periplasmic binding protein YejA 1531466 1171376001504 STU288_07465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 microcin C ABC transporter periplasmic binding protein YejA YP_007902592.1 1529661 D 1171376 CDS YP_007902593.1 482904033 1531476..1532570 1 NC_021151.1 COG4174 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease YejB 1532570 1171376001505 STU288_07470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 microcin C ABC transporter permease YejB YP_007902593.1 1531476 D 1171376 CDS YP_007902594.1 482904034 1532570..1533595 1 NC_021151.1 COG4239 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease 1533595 1171376001506 STU288_07475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 microcin C ABC transporter permease YP_007902594.1 1532570 D 1171376 CDS YP_007902595.1 482904035 1533597..1535186 1 NC_021151.1 COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; microcin C ABC transporter ATP-binding protein YejF 1535186 1171376001507 STU288_07480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 microcin C ABC transporter ATP-binding protein YejF YP_007902595.1 1533597 D 1171376 CDS YP_007902596.1 482904036 complement(1535190..1535534) 1 NC_021151.1 hypothetical protein 1535534 1171376001508 STU288_07485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902596.1 1535190 R 1171376 CDS YP_007902597.1 482904037 complement(1535925..1537115) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; bicyclomycin/multidrug efflux system 1537115 1171376001509 STU288_07490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bicyclomycin/multidrug efflux system YP_007902597.1 1535925 R 1171376 CDS YP_007902598.1 482904038 complement(1537143..1537838) 1 NC_021151.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 16S rRNA pseudouridylate synthase A 1537838 1171376001510 STU288_07495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA pseudouridylate synthase A YP_007902598.1 1537143 R 1171376 CDS YP_007902599.1 482904039 1537990..1539750 1 NC_021151.1 COG1061 DNA or RNA helicases of superfamily II; hypothetical protein 1539750 1171376001511 STU288_07500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902599.1 1537990 D 1171376 CDS YP_007902600.1 482904040 1539875..1540159 1 NC_021151.1 COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25 1540159 1171376001512 STU288_07505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L25 YP_007902600.1 1539875 D 1171376 CDS YP_007902601.1 482904041 complement(1540916..1541923) 1 NC_021151.1 COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA 1541923 1171376001513 STU288_07510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoid-associated protein NdpA YP_007902601.1 1540916 R 1171376 CDS YP_007902602.1 482904042 1542103..1542330 1 NC_021151.1 COG3082 Uncharacterized protein conserved in bacteria; hypothetical protein 1542330 1171376001514 STU288_07515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902602.1 1542103 D 1171376 CDS YP_007902603.1 482904043 1542362..1544122 1 NC_021151.1 COG3083 Predicted hydrolase of alkaline phosphatase superfamily; hypothetical protein 1544122 1171376001515 STU288_07520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902603.1 1542362 D 1171376 CDS YP_007902604.1 482904044 complement(1544403..1545074) 1 NC_021151.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit 1545074 1171376001517 STU288_07525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase V subunit YP_007902604.1 1544403 R 1171376 CDS YP_007902605.1 482904045 complement(1545179..1545304) 1 NC_021151.1 hypothetical protein 1545304 1171376001518 STU288_07530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902605.1 1545179 R 1171376 CDS YP_007902606.1 482904046 1545572..1547401 1 NC_021151.1 COG1835 Predicted acyltransferases; O-antigen acetylase 1547401 1171376001519 STU288_07535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen acetylase YP_007902606.1 1545572 D 1171376 CDS YP_007902607.1 482904047 complement(1547455..1547898) 1 NC_021151.1 Putative tail fiber assembly 1547898 1171376001520 STU288_07540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative tail fiber assembly YP_007902607.1 1547455 R 1171376 CDS YP_007902608.1 482904048 complement(1548276..1548803) 1 NC_021151.1 Putative tail fiber assembly 1548803 1171376001521 STU288_07545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative tail fiber assembly YP_007902608.1 1548276 R 1171376 CDS YP_007902609.1 482904049 complement(1548806..1550047) 1 NC_021151.1 bacteriophage protein 1550047 1171376001522 STU288_07550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007902609.1 1548806 R 1171376 CDS YP_007902610.1 482904050 complement(1550108..1550626) 1 NC_021151.1 COG3740 Phage head maturation protease; Membrane metalloendopeptidase 1550626 1171376001523 STU288_07555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Membrane metalloendopeptidase YP_007902610.1 1550108 R 1171376 CDS YP_007902611.1 482904051 complement(1550640..1550969) 1 NC_021151.1 Phage portal protein 1550969 1171376001524 STU288_07560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage portal protein YP_007902611.1 1550640 R 1171376 CDS YP_007902612.1 482904052 1551266..1552597 1 NC_021151.1 COG4928 Predicted P-loop ATPase; bacteriophage protein 1552597 1171376001525 STU288_07565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007902612.1 1551266 D 1171376 CDS YP_007902613.1 482904053 complement(1552626..1552991) 1 NC_021151.1 putative phage antiterminator 1552991 1171376001526 STU288_07570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage antiterminator YP_007902613.1 1552626 R 1171376 CDS YP_007902614.1 482904054 complement(1553009..1554004) 1 NC_021151.1 putative cytoplasmic protein 1554004 1171376001527 STU288_07575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902614.1 1553009 R 1171376 CDS YP_007902615.1 482904055 complement(1554006..1554236) 1 NC_021151.1 hypothetical protein 1554236 1171376001528 STU288_07580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902615.1 1554006 R 1171376 CDS YP_007902616.1 482904056 complement(1554327..1556693) 1 NC_021151.1 COG4886 Leucine-rich repeat (LRR) protein; E3 ubiquitin-protein ligase SspH2 1556693 1171376001529 STU288_07585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 E3 ubiquitin-protein ligase SspH2 YP_007902616.1 1554327 R 1171376 CDS YP_007902617.1 482904057 complement(1557361..1558152) 1 NC_021151.1 side tail fiber protein 1558152 1171376001530 STU288_07590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 side tail fiber protein YP_007902617.1 1557361 R 1171376 CDS YP_007902618.1 482904058 1558455..1558658 1 NC_021151.1 DinI DNA-damage-inducible protein I 1558658 1171376001531 STU288_07595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DinI DNA-damage-inducible protein I YP_007902618.1 1558455 D 1171376 CDS YP_007902619.1 482904059 complement(1558850..1559407) 1 NC_021151.1 hypothetical protein 1559407 1171376001532 STU288_07600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902619.1 1558850 R 1171376 CDS YP_007902620.1 482904060 1560143..1560790 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarP 1560790 1171376001533 STU288_07605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator NarP YP_007902620.1 1560143 D 1171376 CDS YP_007902621.1 482904061 complement(1560834..1561877) 1 NC_021151.1 COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH 1561877 1171376001534 STU288_07610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme lyase subunit CcmH YP_007902621.1 1560834 R 1171376 CDS YP_007902622.1 482904062 complement(1561874..1562431) 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE 1562431 1171376001535 STU288_07615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiol:disulfide interchange protein DsbE YP_007902622.1 1561874 R 1171376 CDS YP_007902623.1 482904063 complement(1562428..1564359) 1 NC_021151.1 COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF 1564359 1171376001536 STU288_07620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme lyase subunit CcmF YP_007902623.1 1562428 R 1171376 CDS YP_007902624.1 482904064 complement(1564356..1564835) 1 NC_021151.1 COG2332 Cytochrome c-type biogenesis protein CcmE; Cytochrome c-type biogenesis protein CcmE, heme chaperone 1564835 1171376001537 STU288_07625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cytochrome c-type biogenesis protein CcmE, heme chaperone YP_007902624.1 1564356 R 1171376 CDS YP_007902625.1 482904065 complement(1564832..1565044) 1 NC_021151.1 COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD 1565044 1171376001538 STU288_07630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c biogenesis protein CcmD YP_007902625.1 1564832 R 1171376 CDS YP_007902626.1 482904066 complement(1565041..1565778) 1 NC_021151.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmC 1565778 1171376001539 STU288_07635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme ABC transporter membrane protein CcmC YP_007902626.1 1565041 R 1171376 CDS YP_007902627.1 482904067 complement(1565830..1566489) 1 NC_021151.1 COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmB 1566489 1171376001540 STU288_07640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme ABC transporter membrane protein CcmB YP_007902627.1 1565830 R 1171376 CDS YP_007902628.1 482904068 complement(1566486..1567103) 1 NC_021151.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA 1567103 1171376001541 STU288_07645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c biogenesis protein CcmA YP_007902628.1 1566486 R 1171376 CDS YP_007902629.1 482904069 complement(1567124..1567726) 1 NC_021151.1 COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein NapC 1567726 1171376001542 STU288_07650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c-type protein NapC YP_007902629.1 1567124 R 1171376 CDS YP_007902630.1 482904070 complement(1567736..1568185) 1 NC_021151.1 COG3043 Nitrate reductase cytochrome c-type subunit; nitrate reductase cytochrome C550 subunit 1568185 napB 1171376001543 napB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase cytochrome C550 subunit YP_007902630.1 1567736 R 1171376 CDS YP_007902631.1 482904071 complement(1568301..1569170) 1 NC_021151.1 COG0348 Polyferredoxin; quinol dehydrogenase membrane component 1569170 napH 1171376001544 napH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinol dehydrogenase membrane component YP_007902631.1 1568301 R 1171376 CDS YP_007902632.1 482904072 complement(1569157..1569852) 1 NC_021151.1 COG1145 Ferredoxin; quinol dehydrogenase periplasmic component 1569852 napG 1171376001545 napG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinol dehydrogenase periplasmic component YP_007902632.1 1569157 R 1171376 CDS YP_007902633.1 482904073 complement(1569859..1572345) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; nitrate reductase catalytic subunit 1572345 1171376001546 STU288_07670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate reductase catalytic subunit YP_007902633.1 1569859 R 1171376 CDS YP_007902634.1 482904074 complement(1572342..1572605) 1 NC_021151.1 COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase; periplasmic nitrate reductase 1572605 1171376001547 STU288_07675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic nitrate reductase YP_007902634.1 1572342 R 1171376 CDS YP_007902635.1 482904075 complement(1572595..1573086) 1 NC_021151.1 COG1145 Ferredoxin; ferredoxin-type protein 1573086 1171376001548 STU288_07680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferredoxin-type protein YP_007902635.1 1572595 R 1171376 CDS YP_007902636.1 482904076 1573500..1573994 1 NC_021151.1 COG4574 Serine protease inhibitor ecotin; ecotin 1573994 1171376001549 STU288_07685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ecotin YP_007902636.1 1573500 D 1171376 CDS YP_007902637.1 482904077 complement(1574203..1575846) 1 NC_021151.1 COG4615 ABC-type siderophore export system, fused ATPase and permease components; multidrug transporter membrane component/ATP-binding component 1575846 1171376001550 STU288_07690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug transporter membrane component/ATP-binding component YP_007902637.1 1574203 R 1171376 CDS YP_007902638.1 482904078 complement(1575922..1576572) 1 NC_021151.1 COG3145 Alkylated DNA repair protein; alpha-ketoglutarate-dependent dioxygenase AlkB 1576572 1171376001551 STU288_07695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-ketoglutarate-dependent dioxygenase AlkB YP_007902638.1 1575922 R 1171376 CDS YP_007902639.1 482904079 complement(1576575..1577633) 1 NC_021151.1 COG2169 Adenosine deaminase; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase 1577633 1171376001552 STU288_07700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase YP_007902639.1 1576575 R 1171376 CDS YP_007902640.1 482904080 complement(1577717..1578769) 1 NC_021151.1 COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; thiamine biosynthesis lipoprotein ApbE 1578769 1171376001553 STU288_07705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine biosynthesis lipoprotein ApbE YP_007902640.1 1577717 R 1171376 CDS YP_007902641.1 482904081 complement(1578884..1580020) 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane porin protein C 1580020 1171376001554 STU288_07710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane porin protein C YP_007902641.1 1578884 R 1171376 CDS YP_007902642.1 482904082 1580749..1583418 1 NC_021151.1 COG0642 Signal transduction histidine kinase; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 1583418 1171376001555 STU288_07715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_007902642.1 1580749 D 1171376 CDS YP_007902643.1 482904083 1583435..1584085 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator RcsB 1584085 1171376001556 STU288_07720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator RcsB YP_007902643.1 1583435 D 1171376 CDS YP_007902644.1 482904084 complement(1584188..1587034) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 1587034 1171376001557 STU288_07725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_007902644.1 1584188 R 1171376 CDS YP_007902645.1 482904085 complement(1587152..1589788) 1 NC_021151.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 1589788 1171376001558 STU288_07730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA gyrase subunit A YP_007902645.1 1587152 R 1171376 CDS YP_007902646.1 482904086 1589868..1590098 1 NC_021151.1 hypothetical protein 1590098 1171376001559 STU288_07735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902646.1 1589868 D 1171376 CDS YP_007902647.1 482904087 complement(1590198..1591400) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; MR-MLE-family protein 1591400 1171376001560 STU288_07740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MR-MLE-family protein YP_007902647.1 1590198 R 1171376 CDS YP_007902648.1 482904088 complement(1591415..1592740) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transmembrane transpot protein 1592740 1171376001561 STU288_07745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transmembrane transpot protein YP_007902648.1 1591415 R 1171376 CDS YP_007902649.1 482904089 1592979..1593674 1 NC_021151.1 COG1802 Transcriptional regulators; GntR family transcriptional regulator 1593674 1171376001562 STU288_07750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007902649.1 1592979 D 1171376 CDS YP_007902650.1 482904090 1593757..1594485 1 NC_021151.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 1594485 1171376001563 STU288_07755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase YP_007902650.1 1593757 D 1171376 CDS YP_007902651.1 482904091 1594841..1597126 1 NC_021151.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 1597126 1171376001564 STU288_07760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleotide-diphosphate reductase subunit alpha YP_007902651.1 1594841 D 1171376 CDS YP_007902652.1 482904092 1597239..1598369 1 NC_021151.1 COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1598369 nrdB 1171376001565 nrdB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleotide-diphosphate reductase subunit beta YP_007902652.1 1597239 D 1171376 CDS YP_007902653.1 482904093 1598369..1598623 1 NC_021151.1 COG0633 Ferredoxin; 2Fe-2S ferredoxin YfaE 1598623 1171376001566 STU288_07770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2Fe-2S ferredoxin YfaE YP_007902653.1 1598369 D 1171376 CDS YP_007902654.1 482904094 complement(1598625..1599815) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative permease 1599815 1171376001567 STU288_07775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007902654.1 1598625 R 1171376 CDS YP_007902655.1 482904095 1599977..1600855 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional regulator 1600855 1171376001568 STU288_07780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007902655.1 1599977 D 1171376 CDS YP_007902656.1 482904096 complement(1600971..1602041) 1 NC_021151.1 COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 1602041 glpQ 1171376001569 glpQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerophosphodiester phosphodiesterase YP_007902656.1 1600971 R 1171376 CDS YP_007902657.1 482904097 complement(1602046..1603404) 1 NC_021151.1 COG2271 Sugar phosphate permease; sn-glycerol-3-phosphate transporter 1603404 glpT 1171376001570 glpT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sn-glycerol-3-phosphate transporter YP_007902657.1 1602046 R 1171376 CDS YP_007902658.1 482904098 1603677..1605305 1 NC_021151.1 COG0578 Glycerol-3-phosphate dehydrogenase; sn-glycerol-3-phosphate dehydrogenase subunit A 1605305 glpA 1171376001571 glpA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sn-glycerol-3-phosphate dehydrogenase subunit A YP_007902658.1 1603677 D 1171376 CDS YP_007902659.1 482904099 1605295..1606554 1 NC_021151.1 COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; anaerobic glycerol-3-phosphate dehydrogenase subunit B 1606554 1171376001572 STU288_07800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_007902659.1 1605295 D 1171376 CDS YP_007902660.1 482904100 1606551..1607741 1 NC_021151.1 COG0247 Fe-S oxidoreductase; sn-glycerol-3-phosphate dehydrogenase subunit C 1607741 glpC 1171376001573 glpC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sn-glycerol-3-phosphate dehydrogenase subunit C YP_007902660.1 1606551 D 1171376 CDS YP_007902661.1 482904101 1608167..1609189 1 NC_021151.1 deubiquitinase SseL 1609189 1171376001574 STU288_07810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deubiquitinase SseL YP_007902661.1 1608167 D 1171376 CDS YP_007902662.1 482904102 complement(1609299..1609475) 1 NC_021151.1 putative cytoplasmic protein 1609475 1171376001575 STU288_07815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902662.1 1609299 R 1171376 CDS YP_007902663.1 482904103 complement(1609481..1610284) 1 NC_021151.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2-keto-3-deoxy-L-rhamnonate aldolase 1610284 1171376001576 STU288_07820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-keto-3-deoxy-L-rhamnonate aldolase YP_007902663.1 1609481 R 1171376 CDS YP_007902664.1 482904104 complement(1610310..1611599) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; major facilitator family protein 1611599 1171376001577 STU288_07825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major facilitator family protein YP_007902664.1 1610310 R 1171376 CDS YP_007902665.1 482904105 complement(1611655..1612860) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-rhamnonate dehydratase 1612860 1171376001578 STU288_07830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-rhamnonate dehydratase YP_007902665.1 1611655 R 1171376 CDS YP_007902666.1 482904106 complement(1612874..1613656) 1 NC_021151.1 COG1414 Transcriptional regulator; putative transcriptional regulator 1613656 1171376001579 STU288_07835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007902666.1 1612874 R 1171376 CDS YP_007902667.1 482904107 complement(1613906..1615102) 1 NC_021151.1 COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein 1615102 1171376001580 STU288_07840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902667.1 1613906 R 1171376 CDS YP_007902668.1 482904108 complement(1615217..1615759) 1 NC_021151.1 hypothetical protein 1615759 1171376001581 STU288_07845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902668.1 1615217 R 1171376 CDS YP_007902669.1 482904109 1616038..1616463 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphatase NudI 1616463 1171376001582 STU288_07850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside triphosphatase NudI YP_007902669.1 1616038 D 1171376 CDS YP_007902670.1 482904110 complement(1616508..1617113) 1 NC_021151.1 lipopolysaccharide core heptose(II)-phosphate phosphatase 1617113 1171376001583 STU288_07855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide core heptose(II)-phosphate phosphatase YP_007902670.1 1616508 R 1171376 CDS YP_007902671.1 482904111 1617412..1618551 1 NC_021151.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 1618551 1171376001584 STU288_07860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_007902671.1 1617412 D 1171376 CDS YP_007902672.1 482904112 1618554..1619537 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 1619537 1171376001585 STU288_07865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_007902672.1 1618554 D 1171376 CDS YP_007902673.1 482904113 1619534..1621516 1 NC_021151.1 COG0223 Methionyl-tRNA formyltransferase; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 1621516 1171376001586 STU288_07870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_007902673.1 1619534 D 1171376 CDS YP_007902674.1 482904114 1621513..1622412 1 NC_021151.1 COG0726 Predicted xylanase/chitin deacetylase; 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD 1622412 1171376001587 STU288_07875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD YP_007902674.1 1621513 D 1171376 CDS YP_007902675.1 482904115 1622412..1624055 1 NC_021151.1 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; 4-amino-4-deoxy-L-arabinose transferase 1624055 arnT 1171376001588 arnT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-amino-4-deoxy-L-arabinose transferase YP_007902675.1 1622412 D 1171376 CDS YP_007902676.1 482904116 1624052..1624387 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE 1624387 1171376001589 STU288_07885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE YP_007902676.1 1624052 D 1171376 CDS YP_007902677.1 482904117 1624387..1624764 1 NC_021151.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 1624764 1171376001590 STU288_07890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YP_007902677.1 1624387 D 1171376 CDS YP_007902678.1 482904118 complement(1624759..1625016) 1 NC_021151.1 signal transduction protein PmrD 1625016 1171376001591 STU288_07895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 signal transduction protein PmrD YP_007902678.1 1624759 R 1171376 CDS YP_007902679.1 482904119 complement(1625114..1626481) 1 NC_021151.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; O-succinylbenzoic acid--CoA ligase 1626481 1171376001592 STU288_07900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-succinylbenzoic acid--CoA ligase YP_007902679.1 1625114 R 1171376 CDS YP_007902680.1 482904120 complement(1626478..1627440) 1 NC_021151.1 COG1441 O-succinylbenzoate synthase; O-succinylbenzoate synthase 1627440 1171376001593 STU288_07905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-succinylbenzoate synthase YP_007902680.1 1626478 R 1171376 CDS YP_007902681.1 482904121 complement(1627440..1628297) 1 NC_021151.1 COG0447 Dihydroxynaphthoic acid synthase; dihydroxynaphthoic acid synthetase 1628297 1171376001594 STU288_07910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroxynaphthoic acid synthetase YP_007902681.1 1627440 R 1171376 CDS YP_007902682.1 482904122 complement(1628312..1629070) 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1629070 1171376001595 STU288_07915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_007902682.1 1628312 R 1171376 CDS YP_007902683.1 482904123 complement(1629067..1630737) 1 NC_021151.1 COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1630737 1171376001596 STU288_07920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_007902683.1 1629067 R 1171376 CDS YP_007902684.1 482904124 complement(1630823..1632118) 1 NC_021151.1 COG1169 Isochorismate synthase; menaquinone-specific isochorismate synthase 1632118 1171376001597 STU288_07925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 menaquinone-specific isochorismate synthase YP_007902684.1 1630823 R 1171376 CDS YP_007902685.1 482904125 complement(1632219..1632524) 1 NC_021151.1 COG4575 Uncharacterized conserved protein; hypothetical protein 1632524 1171376001598 STU288_07930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902685.1 1632219 R 1171376 CDS YP_007902686.1 482904126 complement(1632579..1633040) 1 NC_021151.1 COG2153 Predicted acyltransferase; acyltransferase 1633040 1171376001599 STU288_07935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyltransferase YP_007902686.1 1632579 R 1171376 CDS YP_007902687.1 482904127 1633101..1634018 1 NC_021151.1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease Z 1634018 1171376001600 STU288_07940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease Z YP_007902687.1 1633101 D 1171376 CDS YP_007902688.1 482904128 1634084..1635085 1 NC_021151.1 COG0835 Chemotaxis signal transduction protein; receptor/regulator protein 1635085 1171376001601 STU288_07945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 receptor/regulator protein YP_007902688.1 1634084 D 1171376 CDS YP_007902689.1 482904129 complement(1635126..1636907) 1 NC_021151.1 COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; lipoprotein 1636907 1171376001602 STU288_07950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902689.1 1635126 R 1171376 CDS YP_007902690.1 482904130 complement(1637018..1637137) 1 NC_021151.1 hypothetical protein 1637137 1171376001603 STU288_07955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902690.1 1637018 R 1171376 CDS YP_007902691.1 482904131 1637427..1637534 1 NC_021151.1 hypothetical protein 1637534 1171376001604 STU288_07960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902691.1 1637427 D 1171376 CDS YP_007902692.1 482904132 complement(1637795..1639252) 1 NC_021151.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH:ubiquinone oxidoreductase subunit N 1639252 1171376001605 STU288_07965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit N YP_007902692.1 1637795 R 1171376 CDS YP_007902693.1 482904133 complement(1639259..1640788) 1 NC_021151.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH:ubiquinone oxidoreductase subunit M 1640788 1171376001606 STU288_07970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit M YP_007902693.1 1639259 R 1171376 CDS YP_007902694.1 482904134 complement(1641102..1642943) 1 NC_021151.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH:ubiquinone oxidoreductase subunit L 1642943 1171376001607 STU288_07975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit L YP_007902694.1 1641102 R 1171376 CDS YP_007902695.1 482904135 complement(1642940..1643242) 1 NC_021151.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH:ubiquinone oxidoreductase subunit K 1643242 1171376001608 STU288_07980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit K YP_007902695.1 1642940 R 1171376 CDS YP_007902696.1 482904136 complement(1643239..1643793) 1 NC_021151.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH:ubiquinone oxidoreductase subunit J 1643793 1171376001609 STU288_07985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit J YP_007902696.1 1643239 R 1171376 CDS YP_007902697.1 482904137 complement(1643804..1644346) 1 NC_021151.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 1644346 1171376001610 STU288_07990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH dehydrogenase subunit I YP_007902697.1 1643804 R 1171376 CDS YP_007902698.1 482904138 complement(1644361..1645338) 1 NC_021151.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH:ubiquinone oxidoreductase subunit H 1645338 1171376001611 STU288_07995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit H YP_007902698.1 1644361 R 1171376 CDS YP_007902699.1 482904139 complement(1645335..1648061) 1 NC_021151.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 1648061 1171376001612 STU288_08000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH dehydrogenase subunit G YP_007902699.1 1645335 R 1171376 CDS YP_007902700.1 482904140 complement(1648092..1649429) 1 NC_021151.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase I subunit F 1649429 1171376001613 STU288_08005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH dehydrogenase I subunit F YP_007902700.1 1648092 R 1171376 CDS YP_007902701.1 482904141 complement(1649426..1649926) 1 NC_021151.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; NADH dehydrogenase subunit E 1649926 1171376001614 STU288_08010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH dehydrogenase subunit E YP_007902701.1 1649426 R 1171376 CDS YP_007902702.1 482904142 complement(1649929..1651731) 1 NC_021151.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1651731 1171376001615 STU288_08015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_007902702.1 1649929 R 1171376 CDS YP_007902703.1 482904143 complement(1651818..1652480) 1 NC_021151.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 1652480 1171376001616 STU288_08020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH dehydrogenase subunit B YP_007902703.1 1651818 R 1171376 CDS YP_007902704.1 482904144 complement(1652496..1652939) 1 NC_021151.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH:ubiquinone oxidoreductase subunit A 1652939 1171376001617 STU288_08025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase subunit A YP_007902704.1 1652496 R 1171376 CDS YP_007902705.1 482904145 complement(1653566..1654504) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional repressor LrhA 1654504 1171376001618 STU288_08030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor LrhA YP_007902705.1 1653566 R 1171376 CDS YP_007902706.1 482904146 1655436..1656650 1 NC_021151.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase AlaT 1656650 1171376001619 STU288_08035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminotransferase AlaT YP_007902706.1 1655436 D 1171376 CDS YP_007902707.1 482904147 1656744..1657343 1 NC_021151.1 COG1896 Predicted hydrolases of HD superfamily; 5'-nucleotidase 1657343 1171376001620 STU288_08040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5'-nucleotidase YP_007902707.1 1656744 D 1171376 CDS YP_007902708.1 482904148 complement(1657435..1659261) 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; sodium/sulfate transporter 1659261 1171376001621 STU288_08045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium/sulfate transporter YP_007902708.1 1657435 R 1171376 CDS YP_007902709.1 482904149 complement(1659338..1659997) 1 NC_021151.1 COG0637 Predicted phosphatase/phosphohexomutase; phosphatase 1659997 1171376001622 STU288_08050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatase YP_007902709.1 1659338 R 1171376 CDS YP_007902710.1 482904150 complement(1660008..1660502) 1 NC_021151.1 COG3013 Uncharacterized conserved protein; hypothetical protein 1660502 1171376001623 STU288_08055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902710.1 1660008 R 1171376 CDS YP_007902711.1 482904151 complement(1660585..1661040) 1 NC_021151.1 COG3092 Uncharacterized protein conserved in bacteria; hypothetical protein 1661040 1171376001624 STU288_08060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902711.1 1660585 R 1171376 CDS YP_007902712.1 482904152 1661380..1662582 1 NC_021151.1 COG0282 Acetate kinase; acetate kinase A/propionate kinase 2 1662582 1171376001625 STU288_08065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetate kinase A/propionate kinase 2 YP_007902712.1 1661380 D 1171376 CDS YP_007902713.1 482904153 1662659..1664803 1 NC_021151.1 COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 1664803 1171376001626 STU288_08070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate acetyltransferase YP_007902713.1 1662659 D 1171376 CDS YP_007902714.1 482904154 1665021..1666541 1 NC_021151.1 COG1288 Predicted membrane protein; hypothetical protein 1666541 1171376001627 STU288_08075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902714.1 1665021 D 1171376 CDS YP_007902715.1 482904155 complement(1666590..1667543) 1 NC_021151.1 COG3958 Transketolase, C-terminal subunit; transketolase 1667543 1171376001628 STU288_08080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transketolase YP_007902715.1 1666590 R 1171376 CDS YP_007902716.1 482904156 complement(1667536..1668366) 1 NC_021151.1 COG3959 Transketolase, N-terminal subunit; transketolase domain protein 1668366 1171376001629 STU288_08085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transketolase domain protein YP_007902716.1 1667536 R 1171376 CDS YP_007902717.1 482904157 complement(1668363..1669754) 1 NC_021151.1 COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 1669754 ulaA 1171376001630 ulaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system ascorbate-specific transporter subunit IIC YP_007902717.1 1668363 R 1171376 CDS YP_007902718.1 482904158 complement(1669775..1670047) 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; putative sugar phosphotransferase component IIB 1670047 1171376001631 STU288_08095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sugar phosphotransferase component IIB YP_007902718.1 1669775 R 1171376 CDS YP_007902719.1 482904159 complement(1670128..1670571) 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); sugar phosphotransferase component II A 1670571 1171376001632 STU288_08100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar phosphotransferase component II A YP_007902719.1 1670128 R 1171376 CDS YP_007902720.1 482904160 1670570..1670743 1 NC_021151.1 hypothetical protein 1670743 1171376001633 STU288_08105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902720.1 1670570 D 1171376 CDS YP_007902721.1 482904161 1670824..1671843 1 NC_021151.1 COG1609 Transcriptional regulators; HTH-type transcriptional repressor purR 1671843 1171376001634 STU288_08110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional repressor purR YP_007902721.1 1670824 D 1171376 CDS YP_007902722.1 482904162 complement(1671849..1672400) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase YfcD 1672400 1171376001635 STU288_08115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NUDIX hydrolase YfcD YP_007902722.1 1671849 R 1171376 CDS YP_007902723.1 482904163 complement(1672460..1673011) 1 NC_021151.1 COG0622 Predicted phosphoesterase; phosphodiesterase 1673011 1171376001636 STU288_08120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphodiesterase YP_007902723.1 1672460 R 1171376 CDS YP_007902724.1 482904164 complement(1673067..1673711) 1 NC_021151.1 COG0625 Glutathione S-transferase; glutathione S-transferase 1673711 1171376001637 STU288_08125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione S-transferase YP_007902724.1 1673067 R 1171376 CDS YP_007902725.1 482904165 1673854..1674501 1 NC_021151.1 COG0625 Glutathione S-transferase; glutathione-S transferase 1674501 1171376001638 STU288_08130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione-S transferase YP_007902725.1 1673854 D 1171376 CDS YP_007902726.1 482904166 1674627..1675520 1 NC_021151.1 COG1090 Predicted nucleoside-diphosphate sugar epimerase; hypothetical protein 1675520 1171376001639 STU288_08135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902726.1 1674627 D 1171376 CDS YP_007902727.1 482904167 complement(1675572..1676345) 1 NC_021151.1 COG4598 ABC-type histidine transport system, ATPase component; histidine/lysine/arginine/ornithine transporter subunit 1676345 1171376001640 STU288_08140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine/lysine/arginine/ornithine transporter subunit YP_007902727.1 1675572 R 1171376 CDS YP_007902728.1 482904168 complement(1676359..1677066) 1 NC_021151.1 COG4160 ABC-type arginine/histidine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisM 1677066 1171376001641 STU288_08145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine/lysine/arginine/ornithine ABC transporter permease HisM YP_007902728.1 1676359 R 1171376 CDS YP_007902729.1 482904169 complement(1677063..1677749) 1 NC_021151.1 COG4215 ABC-type arginine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisQ 1677749 1171376001642 STU288_08150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine/lysine/arginine/ornithine ABC transporter permease HisQ YP_007902729.1 1677063 R 1171376 CDS YP_007902730.1 482904170 complement(1677932..1678714) 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; histidine ABC transporter substrate-binding protein HisJ 1678714 1171376001643 STU288_08155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine ABC transporter substrate-binding protein HisJ YP_007902730.1 1677932 R 1171376 CDS YP_007902731.1 482904171 complement(1678952..1679734) 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter lysine/arginine/ornithine binding periplasmic protein 1679734 1171376001644 STU288_08160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter lysine/arginine/ornithine binding periplasmic protein YP_007902731.1 1678952 R 1171376 CDS YP_007902732.1 482904172 complement(1680023..1680592) 1 NC_021151.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1680592 1171376001645 STU288_08165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_007902732.1 1680023 R 1171376 CDS YP_007902733.1 482904173 complement(1680619..1682025) 1 NC_021151.1 COG0833 Amino acid transporters; amino acid permease 1682025 1171376001646 STU288_08170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid permease YP_007902733.1 1680619 R 1171376 CDS YP_007902734.1 482904174 complement(1682089..1683192) 1 NC_021151.1 COG3457 Predicted amino acid racemase; amino acid racemase 1683192 1171376001647 STU288_08175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid racemase YP_007902734.1 1682089 R 1171376 CDS YP_007902735.1 482904175 complement(1683194..1684615) 1 NC_021151.1 COG0531 Amino acid transporters; High-affinity glutamine permease 1684615 1171376001648 STU288_08180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 High-affinity glutamine permease YP_007902735.1 1683194 R 1171376 CDS YP_007902736.1 482904176 complement(1684706..1686103) 1 NC_021151.1 COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 1686103 1171376001649 STU288_08185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diaminopimelate decarboxylase YP_007902736.1 1684706 R 1171376 CDS YP_007902737.1 482904177 1686314..1687741 1 NC_021151.1 COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; putative sigma L-dependent transcriptional regulator yqiR 1687741 1171376001650 STU288_08190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sigma L-dependent transcriptional regulator yqiR YP_007902737.1 1686314 D 1171376 CDS YP_007902738.1 482904178 complement(1687777..1689294) 1 NC_021151.1 COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; amidophosphoribosyltransferase 1689294 1171376001651 STU288_08195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amidophosphoribosyltransferase YP_007902738.1 1687777 R 1171376 CDS YP_007902739.1 482904179 complement(1689332..1689820) 1 NC_021151.1 COG1286 Uncharacterized membrane protein, required for colicin V production; colicin V production protein 1689820 1171376001652 STU288_08200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colicin V production protein YP_007902739.1 1689332 R 1171376 CDS YP_007902740.1 482904180 complement(1690131..1690805) 1 NC_021151.1 COG3147 Uncharacterized protein conserved in bacteria; cell division protein DedD 1690805 1171376001653 STU288_08205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein DedD YP_007902740.1 1690131 R 1171376 CDS YP_007902741.1 482904181 complement(1690795..1692063) 1 NC_021151.1 COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1692063 1171376001654 STU288_08210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_007902741.1 1690795 R 1171376 CDS YP_007902742.1 482904182 complement(1692131..1693045) 1 NC_021151.1 COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta 1693045 1171376001655 STU288_08215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl-CoA carboxylase subunit beta YP_007902742.1 1692131 R 1171376 CDS YP_007902743.1 482904183 complement(1693195..1693854) 1 NC_021151.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1693854 1171376001656 STU288_08220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902743.1 1693195 R 1171376 CDS YP_007902744.1 482904184 complement(1693903..1694715) 1 NC_021151.1 COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 1694715 truA 1171376001657 truA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA pseudouridine synthase A YP_007902744.1 1693903 R 1171376 CDS YP_007902745.1 482904185 complement(1694715..1695728) 1 NC_021151.1 COG0136 Aspartate-semialdehyde dehydrogenase; semialdehyde dehydrogenase 1695728 1171376001658 STU288_08230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 semialdehyde dehydrogenase YP_007902745.1 1694715 R 1171376 CDS YP_007902746.1 482904186 complement(1695796..1696932) 1 NC_021151.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; erythronate-4-phosphate dehydrogenase PdxB 1696932 1171376001659 STU288_08235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 erythronate-4-phosphate dehydrogenase PdxB YP_007902746.1 1695796 R 1171376 CDS YP_007902747.1 482904187 1697036..1698037 1 NC_021151.1 flagella biosynthesis regulator 1698037 flk 1171376001660 flk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagella biosynthesis regulator YP_007902747.1 1697036 D 1171376 CDS YP_007902748.1 482904188 complement(1698034..1699212) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transporter 1699212 1171376001661 STU288_08245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007902748.1 1698034 R 1171376 CDS YP_007902749.1 482904189 complement(1699392..1699766) 1 NC_021151.1 Putative bacteriophage protein 1699766 1171376001662 STU288_08250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative bacteriophage protein YP_007902749.1 1699392 R 1171376 CDS YP_007902750.1 482904190 1699939..1700187 1 NC_021151.1 COG3423 Predicted transcriptional regulator; DNA-binding protein 1700187 1171376001663 STU288_08255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding protein YP_007902750.1 1699939 D 1171376 CDS YP_007902751.1 482904191 1700356..1700724 1 NC_021151.1 putative cytoplasmic protein 1700724 1171376001664 STU288_08260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902751.1 1700356 D 1171376 CDS YP_007902752.1 482904192 1700724..1701242 1 NC_021151.1 lipoprotein 1701242 1171376001665 STU288_08265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902752.1 1700724 D 1171376 CDS YP_007902753.1 482904193 complement(1701309..1701965) 1 NC_021151.1 COG1266 Predicted metal-dependent membrane protease; putative inner membrane protein 1701965 1171376001666 STU288_08270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902753.1 1701309 R 1171376 CDS YP_007902754.1 482904194 complement(1702063..1703277) 1 NC_021151.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase I 1703277 1171376001667 STU288_08275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-oxoacyl-(acyl carrier protein) synthase I YP_007902754.1 1702063 R 1171376 CDS YP_007902755.1 482904195 1703437..1705437 1 NC_021151.1 COG4121 Uncharacterized conserved protein; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 1705437 mnmC 1171376001668 mnmC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase YP_007902755.1 1703437 D 1171376 CDS YP_007902756.1 482904196 complement(1705489..1705764) 1 NC_021151.1 hypothetical protein 1705764 1171376001669 STU288_08285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902756.1 1705489 R 1171376 CDS YP_007902757.1 482904197 complement(1705797..1706345) 1 NC_021151.1 COG3101 Uncharacterized protein conserved in bacteria; hypothetical protein 1706345 1171376001670 STU288_08290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902757.1 1705797 R 1171376 CDS YP_007902758.1 482904198 complement(1706345..1707154) 1 NC_021151.1 COG0730 Predicted permeases; hypothetical protein 1707154 1171376001671 STU288_08295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902758.1 1706345 R 1171376 CDS YP_007902759.1 482904199 complement(1707154..1707978) 1 NC_021151.1 COG3770 Murein endopeptidase; penicillin-insensitive murein endopeptidase 1707978 mepA 1171376001672 mepA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-insensitive murein endopeptidase YP_007902759.1 1707154 R 1171376 CDS YP_007902760.1 482904200 complement(1707982..1709067) 1 NC_021151.1 COG0082 Chorismate synthase; chorismate synthase 1709067 1171376001673 STU288_08305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chorismate synthase YP_007902760.1 1707982 R 1171376 CDS YP_007902761.1 482904201 complement(1709103..1710035) 1 NC_021151.1 COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1710035 1171376001674 STU288_08310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_007902761.1 1709103 R 1171376 CDS YP_007902762.1 482904202 1710201..1710752 1 NC_021151.1 COG2840 Uncharacterized protein conserved in bacteria; hypothetical protein 1710752 1171376001675 STU288_08315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902762.1 1710201 D 1171376 CDS YP_007902763.1 482904203 complement(1710852..1711337) 1 NC_021151.1 COG2062 Phosphohistidine phosphatase SixA; phosphohistidine phosphatase 1711337 1171376001676 STU288_08320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphohistidine phosphatase YP_007902763.1 1710852 R 1171376 CDS YP_007902764.1 482904204 complement(1711546..1713693) 1 NC_021151.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha 1713693 fadJ 1171376001677 fadJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multifunctional fatty acid oxidation complex subunit alpha YP_007902764.1 1711546 R 1171376 CDS YP_007902765.1 482904205 complement(1713693..1715003) 1 NC_021151.1 COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase 1715003 fadI 1171376001678 fadI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-ketoacyl-CoA thiolase YP_007902765.1 1713693 R 1171376 CDS YP_007902766.1 482904206 complement(1715181..1715465) 1 NC_021151.1 COG3691 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 1715465 1171376001679 STU288_08335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902766.1 1715181 R 1171376 CDS YP_007902767.1 482904207 1715836..1717143 1 NC_021151.1 COG2067 Long-chain fatty acid transport protein; long-chain fatty acid outer membrane transporter 1717143 1171376001680 STU288_08340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long-chain fatty acid outer membrane transporter YP_007902767.1 1715836 D 1171376 CDS YP_007902768.1 482904208 complement(1717204..1717959) 1 NC_021151.1 COG2853 Surface lipoprotein; ABC transporter outer membrane lipoprotein 1717959 1171376001681 STU288_08345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter outer membrane lipoprotein YP_007902768.1 1717204 R 1171376 CDS YP_007902769.1 482904209 1718248..1719189 1 NC_021151.1 COG2116 Formate/nitrite family of transporters; hypothetical protein 1719189 1171376001682 STU288_08350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902769.1 1718248 D 1171376 CDS YP_007902770.1 482904210 complement(1719496..1720434) 1 NC_021151.1 COG4571 Outer membrane protease; outer membrane protease 1720434 1171376001684 STU288_08355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protease YP_007902770.1 1719496 R 1171376 CDS YP_007902771.1 482904211 complement(1720702..1721949) 1 NC_021151.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; phosphoglycerate transport system transcriptional regulator PgtA 1721949 1171376001685 STU288_08360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate transport system transcriptional regulator PgtA YP_007902771.1 1720702 R 1171376 CDS YP_007902772.1 482904212 complement(1721939..1723945) 1 NC_021151.1 COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system; phosphoglycerate transport system sensor protein PgtB 1723945 1171376001686 STU288_08365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate transport system sensor protein PgtB YP_007902772.1 1721939 R 1171376 CDS YP_007902773.1 482904213 complement(1723942..1725135) 1 NC_021151.1 COG1840 ABC-type Fe3+ transport system, periplasmic component; phosphoglycerate transport regulatory protein precursor 1725135 1171376001687 STU288_08370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate transport regulatory protein precursor YP_007902773.1 1723942 R 1171376 CDS YP_007902774.1 482904214 1725023..1725235 1 NC_021151.1 hypothetical protein 1725235 1171376001688 STU288_08375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902774.1 1725023 D 1171376 CDS YP_007902775.1 482904215 1725571..1726962 1 NC_021151.1 COG2271 Sugar phosphate permease; phosphoglycerate transporter protein 1726962 1171376001689 STU288_08380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate transporter protein YP_007902775.1 1725571 D 1171376 CDS YP_007902776.1 482904216 complement(1727238..1727480) 1 NC_021151.1 hypothetical protein 1727480 1171376001690 STU288_08385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902776.1 1727238 R 1171376 CDS YP_007902777.1 482904217 complement(1727641..1727754) 1 NC_021151.1 hypothetical protein 1727754 1171376001691 STU288_08390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902777.1 1727641 R 1171376 CDS YP_007902778.1 482904218 1728002..1728922 1 NC_021151.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis palmitoleoyl acyltransferase 1728922 1171376001692 STU288_08395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid A biosynthesis palmitoleoyl acyltransferase YP_007902778.1 1728002 D 1171376 CDS YP_007902779.1 482904219 complement(1729446..1730684) 1 NC_021151.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase 1730684 1171376001693 STU288_08400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminotransferase YP_007902779.1 1729446 R 1171376 CDS YP_007902780.1 482904220 complement(1731405..1732370) 1 NC_021151.1 COG0837 Glucokinase; glucokinase 1732370 glk 1171376001694 glk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucokinase YP_007902780.1 1731405 R 1171376 CDS YP_007902781.1 482904221 1732574..1733809 1 NC_021151.1 ion channel protein 1733809 1171376001695 STU288_08410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ion channel protein YP_007902781.1 1732574 D 1171376 CDS YP_007902782.1 482904222 complement(1733829..1735481) 1 NC_021151.1 COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes; indolepyruvate decarboxylase 1735481 1171376001696 STU288_08415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 indolepyruvate decarboxylase YP_007902782.1 1733829 R 1171376 CDS YP_007902783.1 482904223 1735661..1736659 1 NC_021151.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); ion-channel protein 1736659 1171376001697 STU288_08420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ion-channel protein YP_007902783.1 1735661 D 1171376 CDS YP_007902784.1 482904224 1736773..1737099 1 NC_021151.1 hypothetical protein 1737099 1171376001698 STU288_08425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902784.1 1736773 D 1171376 CDS YP_007902785.1 482904225 complement(1737160..1738401) 1 NC_021151.1 COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein MntH 1738401 1171376001699 STU288_08430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 manganese transport protein MntH YP_007902785.1 1737160 R 1171376 CDS YP_007902786.1 482904226 1738744..1739946 1 NC_021151.1 COG1972 Nucleoside permease; Solute carrier family 28 member 3 Concentrative Na(+)-nucleoside cotransporter 3 1739946 1171376001700 STU288_08435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Solute carrier family 28 member 3 Concentrative Na(+)-nucleoside cotransporter 3 YP_007902786.1 1738744 D 1171376 CDS YP_007902787.1 482904227 complement(1739999..1742188) 1 NC_021151.1 COG2199 FOG: GGDEF domain; hypothetical protein 1742188 1171376001701 STU288_08440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902787.1 1739999 R 1171376 CDS YP_007902788.1 482904228 1742794..1743156 1 NC_021151.1 hypothetical protein 1743156 1171376001704 STU288_08445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902788.1 1742794 D 1171376 CDS YP_007902789.1 482904229 1743158..1743550 1 NC_021151.1 hypothetical protein 1743550 1171376001705 STU288_08450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902789.1 1743158 D 1171376 CDS YP_007902790.1 482904230 complement(1743604..1745019) 1 NC_021151.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA ligase 1745019 gltX 1171376001706 gltX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamyl-tRNA ligase YP_007902790.1 1743604 R 1171376 CDS YP_007902791.1 482904231 complement(1745835..1746719) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator XapR 1746719 1171376001711 STU288_08460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator XapR YP_007902791.1 1745835 R 1171376 CDS YP_007902792.1 482904232 complement(1746771..1746929) 1 NC_021151.1 hypothetical protein 1746929 1171376001712 STU288_08465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902792.1 1746771 R 1171376 CDS YP_007902793.1 482904233 complement(1746988..1748244) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; nucleoside permease NupG 1748244 1171376001713 STU288_08470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside permease NupG YP_007902793.1 1746988 R 1171376 CDS YP_007902794.1 482904234 complement(1748299..1749132) 1 NC_021151.1 COG0005 Purine nucleoside phosphorylase; purine nucleoside phosphorylase 1749132 1171376001714 STU288_08475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 purine nucleoside phosphorylase YP_007902794.1 1748299 R 1171376 CDS YP_007902795.1 482904235 1749388..1750149 1 NC_021151.1 hypothetical protein 1750149 1171376001715 STU288_08480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902795.1 1749388 D 1171376 CDS YP_007902796.1 482904236 complement(1750211..1751137) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1751137 1171376001716 STU288_08485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007902796.1 1750211 R 1171376 CDS YP_007902797.1 482904237 1751227..1752225 1 NC_021151.1 COG0385 Predicted Na+-dependent transporter; Sodium/bile acid cotransporter 7-B Na(+)/bile acid cotransporter 7-B 1752225 1171376001717 STU288_08490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Sodium/bile acid cotransporter 7-B Na(+)/bile acid cotransporter 7-B YP_007902797.1 1751227 D 1171376 CDS YP_007902798.1 482904238 complement(1752222..1752440) 1 NC_021151.1 COG3530 Uncharacterized protein conserved in bacteria; hypothetical protein 1752440 1171376001718 STU288_08495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902798.1 1752222 R 1171376 CDS YP_007902799.1 482904239 complement(1752442..1754457) 1 NC_021151.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA 1754457 ligA 1171376001719 ligA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD-dependent DNA ligase LigA YP_007902799.1 1752442 R 1171376 CDS YP_007902800.1 482904240 complement(1754529..1755515) 1 NC_021151.1 COG3115 Cell division protein; cell division protein ZipA 1755515 1171376001720 STU288_08505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein ZipA YP_007902800.1 1754529 R 1171376 CDS YP_007902801.1 482904241 1755747..1756508 1 NC_021151.1 COG2981 Uncharacterized protein involved in cysteine biosynthesis; sulfate transport protein CysZ 1756508 1171376001721 STU288_08510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate transport protein CysZ YP_007902801.1 1755747 D 1171376 CDS YP_007902802.1 482904242 1756672..1757643 1 NC_021151.1 COG0031 Cysteine synthase; cysteine synthase A 1757643 1171376001722 STU288_08515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine synthase A YP_007902802.1 1756672 D 1171376 CDS YP_007902803.1 482904243 complement(1757762..1757887) 1 NC_021151.1 hypothetical protein 1757887 1171376001723 STU288_08520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902803.1 1757762 R 1171376 CDS YP_007902804.1 482904244 1758027..1758284 1 NC_021151.1 COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein ptsH 1758284 1171376001724 STU288_08525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphocarrier protein ptsH YP_007902804.1 1758027 D 1171376 CDS YP_007902805.1 482904245 1758333..1760060 1 NC_021151.1 COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 1760060 1171376001725 STU288_08530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate-protein phosphotransferase YP_007902805.1 1758333 D 1171376 CDS YP_007902806.1 482904246 1760101..1760610 1 NC_021151.1 COG2190 Phosphotransferase system IIA components; PTS system glucose-specific transporter subunit IIA 1760610 1171376001726 STU288_08535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucose-specific transporter subunit IIA YP_007902806.1 1760101 D 1171376 CDS YP_007902807.1 482904247 complement(1760759..1760998) 1 NC_021151.1 hypothetical protein 1760998 1171376001727 STU288_08540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902807.1 1760759 R 1171376 CDS YP_007902808.1 482904248 complement(1760995..1761861) 1 NC_021151.1 COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase 1761861 pdxK 1171376001728 pdxK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase YP_007902808.1 1760995 R 1171376 CDS YP_007902809.1 482904249 1761944..1763236 1 NC_021151.1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; transcriptional regulatory protein PtsJ 1763236 1171376001729 STU288_08550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulatory protein PtsJ YP_007902809.1 1761944 D 1171376 CDS YP_007902810.1 482904250 1763251..1763970 1 NC_021151.1 COG0518 GMP synthase - Glutamine amidotransferase domain; glutamine amidotransferase 1763970 1171376001730 STU288_08555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamine amidotransferase YP_007902810.1 1763251 D 1171376 CDS YP_007902811.1 482904251 1764047..1764409 1 NC_021151.1 hypothetical protein 1764409 1171376001731 STU288_08560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902811.1 1764047 D 1171376 CDS YP_007902812.1 482904252 1764422..1764961 1 NC_021151.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase 1764961 1171376001732 STU288_08565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane carboxypeptidase YP_007902812.1 1764422 D 1171376 CDS YP_007902813.1 482904253 complement(1765092..1766003) 1 NC_021151.1 COG0031 Cysteine synthase; cysteine synthase B 1766003 cysM 1171376001733 cysM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine synthase B YP_007902813.1 1765092 R 1171376 CDS YP_007902814.1 482904254 complement(1766071..1767168) 1 NC_021151.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; sulfate/thiosulfate transporter subunit 1767168 1171376001734 STU288_08575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate/thiosulfate transporter subunit YP_007902814.1 1766071 R 1171376 CDS YP_007902815.1 482904255 complement(1767158..1768033) 1 NC_021151.1 COG4208 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter permease subunit 1768033 cysW 1171376001735 cysW Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate/thiosulfate transporter permease subunit YP_007902815.1 1767158 R 1171376 CDS YP_007902816.1 482904256 complement(1768033..1768866) 1 NC_021151.1 COG0555 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter subunit 1768866 1171376001736 STU288_08585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate/thiosulfate transporter subunit YP_007902816.1 1768033 R 1171376 CDS YP_007902817.1 482904257 complement(1768866..1769882) 1 NC_021151.1 COG4150 ABC-type sulfate transport system, periplasmic component; thiosulfate transporter subunit 1769882 1171376001737 STU288_08590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiosulfate transporter subunit YP_007902817.1 1768866 R 1171376 CDS YP_007902818.1 482904258 complement(1770040..1770831) 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 1770831 1171376001738 STU288_08595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 short chain dehydrogenase YP_007902818.1 1770040 R 1171376 CDS YP_007902819.1 482904259 complement(1771069..1771968) 1 NC_021151.1 COG2837 Predicted iron-dependent peroxidase; dyp-type peroxidase family protein 1771968 1171376001739 STU288_08600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dyp-type peroxidase family protein YP_007902819.1 1771069 R 1171376 CDS YP_007902820.1 482904260 complement(1772063..1772638) 1 NC_021151.1 RpoE-regulated lipoprotein 1772638 1171376001740 STU288_08605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RpoE-regulated lipoprotein YP_007902820.1 1772063 R 1171376 CDS YP_007902821.1 482904261 complement(1772700..1773149) 1 NC_021151.1 hypothetical protein 1773149 1171376001741 STU288_08610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902821.1 1772700 R 1171376 CDS YP_007902822.1 482904262 complement(1773136..1773561) 1 NC_021151.1 COG0456 Acetyltransferases; acetyltransferase 1773561 1171376001742 STU288_08615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007902822.1 1773136 R 1171376 CDS YP_007902823.1 482904263 1773774..1774643 1 NC_021151.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase I 1774643 1171376001743 STU288_08620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmuramoyl-l-alanine amidase I YP_007902823.1 1773774 D 1171376 CDS YP_007902824.1 482904264 1774646..1775545 1 NC_021151.1 COG0408 Coproporphyrinogen III oxidase; coproporphyrinogen III oxidase 1775545 1171376001744 STU288_08625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 coproporphyrinogen III oxidase YP_007902824.1 1774646 D 1171376 CDS YP_007902825.1 482904265 1775566..1775895 1 NC_021151.1 putative inner membrane protein 1775895 1171376001745 STU288_08630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007902825.1 1775566 D 1171376 CDS YP_007902826.1 482904266 1776108..1777301 1 NC_021151.1 putative cytoplasmic protein 1777301 1171376001746 STU288_08635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902826.1 1776108 D 1171376 CDS YP_007902827.1 482904267 complement(1777501..1778553) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator EutR 1778553 1171376001747 STU288_08640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator EutR YP_007902827.1 1777501 R 1171376 CDS YP_007902828.1 482904268 complement(1778601..1779095) 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutK 1779095 1171376001748 STU288_08645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carboxysome structural protein EutK YP_007902828.1 1778601 R 1171376 CDS YP_007902829.1 482904269 complement(1779108..1779767) 1 NC_021151.1 COG4816 Ethanolamine utilization protein; ethanolamine utilization protein EutL 1779767 1171376001749 STU288_08650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein EutL YP_007902829.1 1779108 R 1171376 CDS YP_007902830.1 482904270 complement(1779777..1780673) 1 NC_021151.1 COG4302 Ethanolamine ammonia-lyase, small subunit; ethanolamine ammonia-lyase small subunit 1780673 1171376001750 STU288_08655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine ammonia-lyase small subunit YP_007902830.1 1779777 R 1171376 CDS YP_007902831.1 482904271 complement(1780692..1782053) 1 NC_021151.1 COG4303 Ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia lyase large subunit 1782053 1171376001751 STU288_08660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine ammonia lyase large subunit YP_007902831.1 1780692 R 1171376 CDS YP_007902832.1 482904272 complement(1782065..1783468) 1 NC_021151.1 COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase 1783468 eutA 1171376001752 eutA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 reactivating factor for ethanolamine ammonia lyase YP_007902832.1 1782065 R 1171376 CDS YP_007902833.1 482904273 complement(1783465..1784691) 1 NC_021151.1 COG3192 Ethanolamine utilization protein; ethanolamine utilization protein EutH 1784691 1171376001753 STU288_08670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein EutH YP_007902833.1 1783465 R 1171376 CDS YP_007902834.1 482904274 complement(1784811..1785998) 1 NC_021151.1 COG1454 Alcohol dehydrogenase, class IV; ethanol dehydrogenase EutG 1785998 1171376001754 STU288_08675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanol dehydrogenase EutG YP_007902834.1 1784811 R 1171376 CDS YP_007902835.1 482904275 complement(1785988..1786827) 1 NC_021151.1 COG4820 Ethanolamine utilization protein, possible chaperonin; ethanolamine utilization protein EutJ 1786827 1171376001755 STU288_08680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein EutJ YP_007902835.1 1785988 R 1171376 CDS YP_007902836.1 482904276 complement(1786838..1788241) 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE 1788241 1171376001756 STU288_08685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldehyde dehydrogenase EutE YP_007902836.1 1786838 R 1171376 CDS YP_007902837.1 482904277 complement(1788253..1788540) 1 NC_021151.1 COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; ethanolamine utilization protein eutN 1788540 1171376001757 STU288_08690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein eutN YP_007902837.1 1788253 R 1171376 CDS YP_007902838.1 482904278 complement(1788653..1788943) 1 NC_021151.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutM 1788943 1171376001758 STU288_08695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carboxysome structural protein EutM YP_007902838.1 1788653 R 1171376 CDS YP_007902839.1 482904279 complement(1788984..1790000) 1 NC_021151.1 COG0280 Phosphotransacetylase; phosphotransacetylase 1790000 eutD 1171376001759 eutD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphotransacetylase YP_007902839.1 1788984 R 1171376 CDS YP_007902840.1 482904280 complement(1789997..1790800) 1 NC_021151.1 COG4812 Ethanolamine utilization cobalamin adenosyltransferase; ethanolamine utilization cobalamin adenosyltransferase 1790800 1171376001760 STU288_08705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization cobalamin adenosyltransferase YP_007902840.1 1789997 R 1171376 CDS YP_007902841.1 482904281 complement(1790797..1791486) 1 NC_021151.1 COG4766 Ethanolamine utilization protein; ethanolamine utilization protein EutQ 1791486 1171376001761 STU288_08710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein EutQ YP_007902841.1 1790797 R 1171376 CDS YP_007902842.1 482904282 complement(1791464..1791943) 1 NC_021151.1 COG4917 Ethanolamine utilization protein; ethanolamine utilization protein EutP 1791943 1171376001762 STU288_08715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ethanolamine utilization protein EutP YP_007902842.1 1791464 R 1171376 CDS YP_007902843.1 482904283 complement(1791956..1792291) 1 NC_021151.1 COG4810 Ethanolamine utilization protein; carboxysome structural protein EutS 1792291 1171376001763 STU288_08720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carboxysome structural protein EutS YP_007902843.1 1791956 R 1171376 CDS YP_007902844.1 482904284 complement(1792705..1794984) 1 NC_021151.1 COG0281 Malic enzyme; bifunctional malic enzyme oxidoreductase/phosphotransacetylase 1794984 1171376001764 STU288_08725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional malic enzyme oxidoreductase/phosphotransacetylase YP_007902844.1 1792705 R 1171376 CDS YP_007902845.1 482904285 1795256..1796206 1 NC_021151.1 COG0176 Transaldolase; transaldolase A 1796206 1171376001765 STU288_08730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transaldolase A YP_007902845.1 1795256 D 1171376 CDS YP_007902846.1 482904286 1796226..1798226 1 NC_021151.1 COG0021 Transketolase; transketolase 1798226 1171376001766 STU288_08735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transketolase YP_007902846.1 1796226 D 1171376 CDS YP_007902847.1 482904287 complement(1798289..1798519) 1 NC_021151.1 hypothetical protein 1798519 1171376001767 STU288_08740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902847.1 1798289 R 1171376 CDS YP_007902848.1 482904288 complement(1798647..1799690) 1 NC_021151.1 hypothetical protein 1799690 1171376001768 STU288_08745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902848.1 1798647 R 1171376 CDS YP_007902849.1 482904289 complement(1799815..1800390) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose pyrophosphatase NudK 1800390 1171376001769 STU288_08750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GDP-mannose pyrophosphatase NudK YP_007902849.1 1799815 R 1171376 CDS YP_007902850.1 482904290 1800594..1801892 1 NC_021151.1 COG1680 Beta-lactamase class C and other penicillin binding proteins; periplasmic esterase 1801892 1171376001770 STU288_08755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic esterase YP_007902850.1 1800594 D 1171376 CDS YP_007902851.1 482904291 complement(1802341..1804302) 1 NC_021151.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit 1804302 1171376001771 STU288_08760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase Fe-S binding subunit YP_007902851.1 1802341 R 1171376 CDS YP_007902852.1 482904292 1804488..1806188 1 NC_021151.1 COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarQ 1806188 1171376001772 STU288_08765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrate/nitrite sensor protein NarQ YP_007902852.1 1804488 D 1171376 CDS YP_007902853.1 482904293 1806373..1809486 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; aminoglycoside/multidrug efflux system 1809486 1171376001773 STU288_08770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoglycoside/multidrug efflux system YP_007902853.1 1806373 D 1171376 CDS YP_007902854.1 482904294 1810060..1810416 1 NC_021151.1 COG1393 Arsenate reductase and related proteins, glutaredoxin family; reductase 1810416 1171376001774 STU288_08775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 reductase YP_007902854.1 1810060 D 1171376 CDS YP_007902855.1 482904295 1810420..1811547 1 NC_021151.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 1811547 1171376001775 STU288_08780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinyl-diaminopimelate desuccinylase YP_007902855.1 1810420 D 1171376 CDS YP_007902856.1 482904296 1811575..1811775 1 NC_021151.1 hypothetical protein 1811775 1171376001776 STU288_08785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902856.1 1811575 D 1171376 CDS YP_007902857.1 482904297 complement(1811802..1813820) 1 NC_021151.1 COG1444 Predicted P-loop ATPase fused to an acetyltransferase; methionine tRNA cytidine acetyltransferase 1813820 1171376001777 STU288_08790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionine tRNA cytidine acetyltransferase YP_007902857.1 1811802 R 1171376 CDS YP_007902858.1 482904298 complement(1813836..1814699) 1 NC_021151.1 COG2321 Predicted metalloprotease; hypothetical protein 1814699 1171376001778 STU288_08795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902858.1 1813836 R 1171376 CDS YP_007902859.1 482904299 complement(1814830..1815543) 1 NC_021151.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1815543 1171376001779 STU288_08800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_007902859.1 1814830 R 1171376 CDS YP_007902860.1 482904300 complement(1815718..1816752) 1 NC_021151.1 COG3317 Uncharacterized lipoprotein; lipoprotein 1816752 1171376001780 STU288_08805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007902860.1 1815718 R 1171376 CDS YP_007902861.1 482904301 complement(1816769..1817647) 1 NC_021151.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 1817647 1171376001781 STU288_08810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrodipicolinate synthase YP_007902861.1 1816769 R 1171376 CDS YP_007902862.1 482904302 1817793..1818365 1 NC_021151.1 COG2716 Glycine cleavage system regulatory protein; glycine cleavage system transcriptional repressor 1818365 gcvR 1171376001782 gcvR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine cleavage system transcriptional repressor YP_007902862.1 1817793 D 1171376 CDS YP_007902863.1 482904303 1818365..1818835 1 NC_021151.1 COG1225 Peroxiredoxin; thioredoxin-dependent thiol peroxidase 1818835 bcp 1171376001783 bcp Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioredoxin-dependent thiol peroxidase YP_007902863.1 1818365 D 1171376 CDS YP_007902864.1 482904304 complement(1818882..1819235) 1 NC_021151.1 COG1929 Glycerate kinase; glycerate kinase 1819235 1171376001784 STU288_08825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerate kinase YP_007902864.1 1818882 R 1171376 CDS YP_007902865.1 482904305 complement(1819422..1820489) 1 NC_021151.1 COG0628 Predicted permease; putative permease perM 1820489 1171376001785 STU288_08830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease perM YP_007902865.1 1819422 R 1171376 CDS YP_007902866.1 482904306 1820697..1822160 1 NC_021151.1 COG4783 Putative Zn-dependent protease, contains TPR repeats; TPR repeat-containing protein YfgC 1822160 1171376001786 STU288_08835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TPR repeat-containing protein YfgC YP_007902866.1 1820697 D 1171376 CDS YP_007902867.1 482904307 1822200..1822559 1 NC_021151.1 COG1393 Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 1822559 1171376001787 STU288_08840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arsenate reductase YP_007902867.1 1822200 D 1171376 CDS YP_007902868.1 482904308 complement(1822586..1823311) 1 NC_021151.1 COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor 1823311 1171376001788 STU288_08845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA replication initiation factor YP_007902868.1 1822586 R 1171376 CDS YP_007902869.1 482904309 complement(1823382..1824671) 1 NC_021151.1 COG2233 Xanthine/uracil permeases; uracil transporter 1824671 1171376001789 STU288_08850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uracil transporter YP_007902869.1 1823382 R 1171376 CDS YP_007902870.1 482904310 complement(1824759..1825385) 1 NC_021151.1 COG0035 Uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 1825385 upp 1171376001790 upp Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uracil phosphoribosyltransferase YP_007902870.1 1824759 R 1171376 CDS YP_007902871.1 482904311 1825799..1826836 1 NC_021151.1 COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; phosphoribosylaminoimidazole synthetase 1826836 1171376001791 STU288_08860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylaminoimidazole synthetase YP_007902871.1 1825799 D 1171376 CDS YP_007902872.1 482904312 1826836..1827474 1 NC_021151.1 COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 1827474 purN 1171376001792 purN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylglycinamide formyltransferase YP_007902872.1 1826836 D 1171376 CDS YP_007902873.1 482904313 1827663..1829729 1 NC_021151.1 COG0855 Polyphosphate kinase; polyphosphate kinase 1829729 1171376001793 STU288_08870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polyphosphate kinase YP_007902873.1 1827663 D 1171376 CDS YP_007902874.1 482904314 1829734..1831275 1 NC_021151.1 COG0248 Exopolyphosphatase; exopolyphosphatase 1831275 1171376001794 STU288_08875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exopolyphosphatase YP_007902874.1 1829734 D 1171376 CDS YP_007902875.1 482904315 complement(1831311..1833524) 1 NC_021151.1 COG2199 FOG: GGDEF domain; hypothetical protein 1833524 1171376001795 STU288_08880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902875.1 1831311 R 1171376 CDS YP_007902876.1 482904316 1833937..1834128 1 NC_021151.1 hypothetical protein 1834128 1171376001796 STU288_08885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902876.1 1833937 D 1171376 CDS YP_007902877.1 482904317 1834669..1834998 1 NC_021151.1 putative cytoplasmic protein 1834998 1171376001797 STU288_08890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902877.1 1834669 D 1171376 CDS YP_007902878.1 482904318 complement(1835018..1835374) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; transposase 1835374 1171376001798 STU288_08895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007902878.1 1835018 R 1171376 CDS YP_007902879.1 482904319 complement(1835531..1837108) 1 NC_021151.1 COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase 1837108 guaA 1171376001799 guaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GMP synthase YP_007902879.1 1835531 R 1171376 CDS YP_007902880.1 482904320 complement(1837178..1838644) 1 NC_021151.1 COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase 1838644 1171376001800 STU288_08905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inosine 5'-monophosphate dehydrogenase YP_007902880.1 1837178 R 1171376 CDS YP_007902881.1 482904321 1838805..1840154 1 NC_021151.1 COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 1840154 xseA 1171376001801 xseA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exodeoxyribonuclease VII large subunit YP_007902881.1 1838805 D 1171376 CDS YP_007902882.1 482904322 complement(1840316..1846426) 1 NC_021151.1 COG1404 Subtilisin-like serine proteases; AIDA autotransporter-like protein ShdA 1846426 1171376001802 STU288_08915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AIDA autotransporter-like protein ShdA YP_007902882.1 1840316 R 1171376 CDS YP_007902883.1 482904323 complement(1847028..1847141) 1 NC_021151.1 hypothetical protein 1847141 1171376001803 STU288_08920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902883.1 1847028 R 1171376 CDS YP_007902884.1 482904324 complement(1847129..1854436) 1 NC_021151.1 outer membrane protein RatB 1854436 1171376001804 STU288_08925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein RatB YP_007902884.1 1847129 R 1171376 CDS YP_007902885.1 482904325 complement(1854602..1860181) 1 NC_021151.1 outer membrane protein RatA 1860181 1171376001805 STU288_08930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein RatA YP_007902885.1 1854602 R 1171376 CDS YP_007902886.1 482904326 complement(1860319..1861278) 1 NC_021151.1 putative outer membrane protein 1861278 1171376001806 STU288_08935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007902886.1 1860319 R 1171376 CDS YP_007902887.1 482904327 complement(1861336..1863528) 1 NC_021151.1 intimin-like protein SinH 1863528 1171376001807 STU288_08940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 intimin-like protein SinH YP_007902887.1 1861336 R 1171376 CDS YP_007902888.1 482904328 complement(1863874..1864095) 1 NC_021151.1 hypothetical protein 1864095 1171376001808 STU288_08945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902888.1 1863874 R 1171376 CDS YP_007902889.1 482904329 complement(1864184..1865656) 1 NC_021151.1 COG1160 Predicted GTPases; GTP-binding protein Der 1865656 1171376001809 STU288_08950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein Der YP_007902889.1 1864184 R 1171376 CDS YP_007902890.1 482904330 complement(1865775..1866953) 1 NC_021151.1 COG1520 FOG: WD40-like repeat; outer membrane biogenesis protein BamB 1866953 1171376001810 STU288_08955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane biogenesis protein BamB YP_007902890.1 1865775 R 1171376 CDS YP_007902891.1 482904331 complement(1866964..1867584) 1 NC_021151.1 COG2976 Uncharacterized protein conserved in bacteria; hypothetical protein 1867584 1171376001811 STU288_08960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902891.1 1866964 R 1171376 CDS YP_007902892.1 482904332 complement(1867598..1868872) 1 NC_021151.1 COG0124 Histidyl-tRNA synthetase; histidyl-tRNA ligase 1868872 hisS 1171376001812 hisS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidyl-tRNA ligase YP_007902892.1 1867598 R 1171376 CDS YP_007902893.1 482904333 complement(1868983..1870101) 1 NC_021151.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1870101 ispG 1171376001813 ispG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_007902893.1 1868983 R 1171376 CDS YP_007902894.1 482904334 complement(1870128..1871132) 1 NC_021151.1 COG1426 Uncharacterized protein conserved in bacteria; cytoskeletal protein RodZ 1871132 1171376001814 STU288_08975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoskeletal protein RodZ YP_007902894.1 1870128 R 1171376 CDS YP_007902895.1 482904335 complement(1871424..1872590) 1 NC_021151.1 COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N 1872590 1171376001815 STU288_08980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal RNA large subunit methyltransferase N YP_007902895.1 1871424 R 1171376 CDS YP_007902896.1 482904336 complement(1872797..1873228) 1 NC_021151.1 COG0105 Nucleoside diphosphate kinase; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase 1873228 ndk 1171376001816 ndk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase YP_007902896.1 1872797 R 1171376 CDS YP_007902897.1 482904337 complement(1873349..1874212) 1 NC_021151.1 COG1145 Ferredoxin; putative polyferredoxin 1874212 1171376001817 STU288_08990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative polyferredoxin YP_007902897.1 1873349 R 1171376 CDS YP_007902898.1 482904338 complement(1874212..1875021) 1 NC_021151.1 COG3302 DMSO reductase anchor subunit; anaerobic reductase component 1875021 1171376001818 STU288_08995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic reductase component YP_007902898.1 1874212 R 1171376 CDS YP_007902899.1 482904339 complement(1875014..1875643) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; Formate dehydrogenase, iron-sulfur subunit 1875643 1171376001819 STU288_09000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Formate dehydrogenase, iron-sulfur subunit YP_007902899.1 1875014 R 1171376 CDS YP_007902900.1 482904340 complement(1875640..1878018) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative anaerobic dimethylsulfoxide reductase 1878018 1171376001820 STU288_09005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative anaerobic dimethylsulfoxide reductase YP_007902900.1 1875640 R 1171376 CDS YP_007902901.1 482904341 complement(1878174..1880489) 1 NC_021151.1 COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C 1880489 1171376001821 STU288_09010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-binding protein 1C YP_007902901.1 1878174 R 1171376 CDS YP_007902902.1 482904342 complement(1880490..1885424) 1 NC_021151.1 COG2373 Large extracellular alpha-helical protein; putative inner membrane lipoprotein 1885424 1171376001822 STU288_09015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane lipoprotein YP_007902902.1 1880490 R 1171376 CDS YP_007902903.1 482904343 1885633..1886475 1 NC_021151.1 COG2897 Rhodanese-related sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1886475 sseA 1171376001823 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-mercaptopyruvate sulfurtransferase YP_007902903.1 1885633 D 1171376 CDS YP_007902904.1 482904344 complement(1886612..1886734) 1 NC_021151.1 hypothetical protein 1886734 1171376001824 STU288_09025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902904.1 1886612 R 1171376 CDS YP_007902905.1 482904345 1886722..1887390 1 NC_021151.1 putative cytoplasmic protein 1887390 1171376001825 STU288_09030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007902905.1 1886722 D 1171376 CDS YP_007902906.1 482904346 complement(1887961..1888737) 1 NC_021151.1 enhanced serine sensitivity protein SseB 1888737 1171376001826 STU288_09035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enhanced serine sensitivity protein SseB YP_007902906.1 1887961 R 1171376 CDS YP_007902907.1 482904347 complement(1888847..1890130) 1 NC_021151.1 COG0260 Leucyl aminopeptidase; aminopeptidase B 1890130 1171376001827 STU288_09040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminopeptidase B YP_007902907.1 1888847 R 1171376 CDS YP_007902908.1 482904348 complement(1890377..1890577) 1 NC_021151.1 COG2975 Uncharacterized protein conserved in bacteria; hypothetical protein 1890577 1171376001828 STU288_09045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902908.1 1890377 R 1171376 CDS YP_007902909.1 482904349 complement(1890589..1890924) 1 NC_021151.1 COG0633 Ferredoxin; Adrenodoxin-like protein 1890924 1171376001829 STU288_09050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Adrenodoxin-like protein YP_007902909.1 1890589 R 1171376 CDS YP_007902910.1 482904350 complement(1890926..1892776) 1 NC_021151.1 COG0443 Molecular chaperone; chaperone protein HscA 1892776 hscA 1171376001830 hscA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone protein HscA YP_007902910.1 1890926 R 1171376 CDS YP_007902911.1 482904351 complement(1892789..1893304) 1 NC_021151.1 COG1076 DnaJ-domain-containing proteins 1; co-chaperone HscB 1893304 hscB 1171376001831 hscB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 co-chaperone HscB YP_007902911.1 1892789 R 1171376 CDS YP_007902912.1 482904352 complement(1893500..1893823) 1 NC_021151.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly protein 1893823 iscA 1171376001832 iscA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-sulfur cluster assembly protein YP_007902912.1 1893500 R 1171376 CDS YP_007902913.1 482904353 complement(1893852..1894238) 1 NC_021151.1 COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein 1894238 1171376001833 STU288_09070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 scaffold protein YP_007902913.1 1893852 R 1171376 CDS YP_007902914.1 482904354 complement(1894266..1895480) 1 NC_021151.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 1895480 1171376001834 STU288_09075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine desulfurase YP_007902914.1 1894266 R 1171376 CDS YP_007902915.1 482904355 complement(1895661..1896155) 1 NC_021151.1 COG1959 Predicted transcriptional regulator; DNA-binding transcriptional regulator IscR 1896155 1171376001835 STU288_09080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator IscR YP_007902915.1 1895661 R 1171376 CDS YP_007902916.1 482904356 complement(1896315..1897046) 1 NC_021151.1 COG0565 rRNA methylase; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 1897046 1171376001836 STU288_09085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ YP_007902916.1 1896315 R 1171376 CDS YP_007902917.1 482904357 1897165..1897968 1 NC_021151.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 1897968 1171376001837 STU288_09090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inositol monophosphatase YP_007902917.1 1897165 D 1171376 CDS YP_007902918.1 482904358 1898113..1898991 1 NC_021151.1 COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 1898991 1171376001838 STU288_09095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902918.1 1898113 D 1171376 CDS YP_007902919.1 482904359 1899173..1900216 1 NC_021151.1 COG1145 Ferredoxin; anaerobic sulfite reductase subunit A 1900216 1171376001839 STU288_09100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic sulfite reductase subunit A YP_007902919.1 1899173 D 1171376 CDS YP_007902920.1 482904360 1900220..1901038 1 NC_021151.1 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; anaerobic sulfite reductase subunit B 1901038 1171376001840 STU288_09105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic sulfite reductase subunit B YP_007902920.1 1900220 D 1171376 CDS YP_007902921.1 482904361 1901049..1902062 1 NC_021151.1 COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits; sulfite reductase subunit C 1902062 1171376001841 STU288_09110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfite reductase subunit C YP_007902921.1 1901049 D 1171376 CDS YP_007902922.1 482904362 complement(1902063..1903049) 1 NC_021151.1 COG2215 ABC-type uncharacterized transport system, permease component; inner membrane protein 1903049 1171376001842 STU288_09115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007902922.1 1902063 R 1171376 CDS YP_007902923.1 482904363 complement(1903040..1903678) 1 NC_021151.1 COG3683 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein 1903678 1171376001843 STU288_09120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902923.1 1903040 R 1171376 CDS YP_007902924.1 482904364 1903804..1905081 1 NC_021151.1 COG3711 Transcriptional antiterminator; stationary phase inducible protein CsiE 1905081 1171376001844 STU288_09125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 stationary phase inducible protein CsiE YP_007902924.1 1903804 D 1171376 CDS YP_007902925.1 482904365 complement(1905076..1906215) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; 3-phenylpropionic acid transporter 1906215 1171376001845 STU288_09130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-phenylpropionic acid transporter YP_007902925.1 1905076 R 1171376 CDS YP_007902926.1 482904366 complement(1906411..1907664) 1 NC_021151.1 COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 1907664 glyA 1171376001846 glyA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine hydroxymethyltransferase YP_007902926.1 1906411 R 1171376 CDS YP_007902927.1 482904367 1907989..1909179 1 NC_021151.1 COG1017 Hemoglobin-like flavoprotein; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 1909179 1171376001847 STU288_09140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 YP_007902927.1 1907989 D 1171376 CDS YP_007902928.1 482904368 1909361..1910905 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; DNA-binding transcriptional activator CadC 1910905 1171376001848 STU288_09145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator CadC YP_007902928.1 1909361 D 1171376 CDS YP_007902929.1 482904369 1911266..1912597 1 NC_021151.1 COG0531 Amino acid transporters; lysine/cadaverine antiporter 1912597 cadB 1171376001849 cadB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysine/cadaverine antiporter YP_007902929.1 1911266 D 1171376 CDS YP_007902930.1 482904370 1912680..1914824 1 NC_021151.1 COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase CadA 1914824 1171376001850 STU288_09155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysine decarboxylase CadA YP_007902930.1 1912680 D 1171376 CDS YP_007902931.1 482904371 1914880..1916340 1 NC_021151.1 COG3104 Dipeptide/tripeptide permease; Inner membrane transporter ybgH 1916340 1171376001851 STU288_09160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane transporter ybgH YP_007902931.1 1914880 D 1171376 CDS YP_007902932.1 482904372 complement(1916389..1916727) 1 NC_021151.1 COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 1 1916727 1171376001852 STU288_09165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrogen regulatory protein P-II 1 YP_007902932.1 1916389 R 1171376 CDS YP_007902933.1 482904373 complement(1916804..1918141) 1 NC_021151.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator GlrR 1918141 1171376001853 STU288_09170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 response regulator GlrR YP_007902933.1 1916804 R 1171376 CDS YP_007902934.1 482904374 complement(1918138..1918824) 1 NC_021151.1 hypothetical protein 1918824 1171376001854 STU288_09175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902934.1 1918138 R 1171376 CDS YP_007902935.1 482904375 complement(1918904..1920334) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensory histidine kinase GlrK 1920334 1171376001855 STU288_09180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensory histidine kinase GlrK YP_007902935.1 1918904 R 1171376 CDS YP_007902936.1 482904376 complement(1920984..1924868) 1 NC_021151.1 COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase 1924868 1171376001856 STU288_09185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylformylglycinamidine synthase YP_007902936.1 1920984 R 1171376 CDS YP_007902937.1 482904377 1925127..1926671 1 NC_021151.1 COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; membrane-bound lytic transglycosylase F 1926671 1171376001857 STU288_09190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane-bound lytic transglycosylase F YP_007902937.1 1925127 D 1171376 CDS YP_007902938.1 482904378 complement(1926722..1927273) 1 NC_021151.1 COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase 1927273 1171376001858 STU288_09195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA-specific adenosine deaminase YP_007902938.1 1926722 R 1171376 CDS YP_007902939.1 482904379 complement(1927298..1927933) 1 NC_021151.1 COG0560 Phosphoserine phosphatase; hypothetical protein 1927933 1171376001859 STU288_09200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902939.1 1927298 R 1171376 CDS YP_007902940.1 482904380 complement(1927937..1929298) 1 NC_021151.1 COG1264 Phosphotransferase system IIB components; PTS system transporter subunit EIIC 1929298 1171376001860 STU288_09205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system transporter subunit EIIC YP_007902940.1 1927937 R 1171376 CDS YP_007902941.1 482904381 complement(1929309..1930202) 1 NC_021151.1 COG2103 Predicted sugar phosphate isomerase; N-acetylmuramic acid-6-phosphate etherase 1930202 murQ 1171376001861 murQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmuramic acid-6-phosphate etherase YP_007902941.1 1929309 R 1171376 CDS YP_007902942.1 482904382 1930318..1931166 1 NC_021151.1 COG1737 Transcriptional regulators; DNA-binding transcriptional regulator 1931166 1171376001862 STU288_09215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007902942.1 1930318 D 1171376 CDS YP_007902943.1 482904383 complement(1931205..1932122) 1 NC_021151.1 COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase 1932122 1171376001863 STU288_09220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-dehydropantoate 2-reductase YP_007902943.1 1931205 R 1171376 CDS YP_007902944.1 482904384 complement(1932144..1933340) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Major Facilitator Superfamily protein 1933340 1171376001864 STU288_09225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Major Facilitator Superfamily protein YP_007902944.1 1932144 R 1171376 CDS YP_007902945.1 482904385 1933456..1934382 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1934382 1171376001865 STU288_09230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007902945.1 1933456 D 1171376 CDS YP_007902946.1 482904386 1934420..1934680 1 NC_021151.1 COG1145 Ferredoxin; 4Fe-4S ferredoxin 1934680 1171376001866 STU288_09235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4Fe-4S ferredoxin YP_007902946.1 1934420 D 1171376 CDS YP_007902947.1 482904387 complement(1934792..1935172) 1 NC_021151.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase 1935172 acpS 1171376001867 acpS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4'-phosphopantetheinyl transferase YP_007902947.1 1934792 R 1171376 CDS YP_007902948.1 482904388 complement(1935172..1935903) 1 NC_021151.1 COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 1935903 1171376001868 STU288_09245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxine 5'-phosphate synthase YP_007902948.1 1935172 R 1171376 CDS YP_007902949.1 482904389 complement(1935915..1936643) 1 NC_021151.1 COG1381 Recombinational DNA repair protein (RecF pathway); DNA repair protein RecO 1936643 recO 1171376001869 recO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA repair protein RecO YP_007902949.1 1935915 R 1171376 CDS YP_007902950.1 482904390 complement(1936655..1937560) 1 NC_021151.1 COG1159 GTPase; GTPase Era 1937560 era 1171376001870 era Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTPase Era YP_007902950.1 1936655 R 1171376 CDS YP_007902951.1 482904391 complement(1937557..1938237) 1 NC_021151.1 COG0571 dsRNA-specific ribonuclease; ribonuclease III 1938237 rnc 1171376001871 rnc Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease III YP_007902951.1 1937557 R 1171376 CDS YP_007902952.1 482904392 complement(1938511..1939485) 1 NC_021151.1 COG0681 Signal peptidase I; signal peptidase I 1939485 1171376001872 STU288_09265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 signal peptidase I YP_007902952.1 1938511 R 1171376 CDS YP_007902953.1 482904393 complement(1939502..1941301) 1 NC_021151.1 COG0481 Membrane GTPase LepA; GTP-binding protein LepA 1941301 1171376001873 STU288_09270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein LepA YP_007902953.1 1939502 R 1171376 CDS YP_007902954.1 482904394 complement(1942152..1942295) 1 NC_021151.1 hypothetical protein 1942295 1171376001874 STU288_09275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902954.1 1942152 R 1171376 CDS YP_007902955.1 482904395 1942304..1943200 1 NC_021151.1 type III secretion protein GogB 1943200 1171376001875 STU288_09280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion protein GogB YP_007902955.1 1942304 D 1171376 CDS YP_007902956.1 482904396 complement(1943404..1943532) 1 NC_021151.1 hypothetical protein 1943532 1171376001876 STU288_09285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902956.1 1943404 R 1171376 CDS YP_007902957.1 482904397 complement(1944529..1944693) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; hypothetical protein 1944693 1171376001877 STU288_09290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902957.1 1944529 R 1171376 CDS YP_007902958.1 482904398 complement(1945401..1945613) 1 NC_021151.1 putative prophage protein 1945613 1171376001878 STU288_09295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative prophage protein YP_007902958.1 1945401 R 1171376 CDS YP_007902959.1 482904399 complement(1946044..1946622) 1 NC_021151.1 hypothetical protein 1946622 1171376001879 STU288_09300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902959.1 1946044 R 1171376 CDS YP_007902960.1 482904400 complement(1946612..1947436) 1 NC_021151.1 COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Poly [ADP-ribose] polymerase 9 PARP-9 1947436 1171376001880 STU288_09305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Poly [ADP-ribose] polymerase 9 PARP-9 YP_007902960.1 1946612 R 1171376 CDS YP_007902961.1 482904401 complement(1947433..1949805) 1 NC_021151.1 side tail fiber protein 1949805 1171376001881 STU288_09310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 side tail fiber protein YP_007902961.1 1947433 R 1171376 CDS YP_007902962.1 482904402 complement(1949859..1950101) 1 NC_021151.1 hypothetical protein 1950101 1171376001882 STU288_09315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902962.1 1949859 R 1171376 CDS YP_007902963.1 482904403 complement(1950140..1953502) 1 NC_021151.1 COG4733 Phage-related protein, tail component; host specificity protein 1953502 1171376001883 STU288_09320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 host specificity protein YP_007902963.1 1950140 R 1171376 CDS YP_007902964.1 482904404 complement(1953564..1954211) 1 NC_021151.1 COG4723 Phage-related protein, tail component; Tail assembly protein I 1954211 1171376001884 STU288_09325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Tail assembly protein I YP_007902964.1 1953564 R 1171376 CDS YP_007902965.1 482904405 complement(1954109..1954744) 1 NC_021151.1 COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; putative phage tail fiber protein K 1954744 1171376001885 STU288_09330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage tail fiber protein K YP_007902965.1 1954109 R 1171376 CDS YP_007902966.1 482904406 complement(1954853..1955551) 1 NC_021151.1 COG4672 Phage-related protein; phage tail component L-like protein 1955551 1171376001886 STU288_09335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail component L-like protein YP_007902966.1 1954853 R 1171376 CDS YP_007902967.1 482904407 complement(1955561..1955890) 1 NC_021151.1 COG4718 Phage-related protein; Minor tail protein M 1955890 1171376001887 STU288_09340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein M YP_007902967.1 1955561 R 1171376 CDS YP_007902968.1 482904408 complement(1955893..1958988) 1 NC_021151.1 COG5281 Phage-related minor tail protein; gifsy-1 prophage VmtH 1958988 1171376001888 STU288_09345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage VmtH YP_007902968.1 1955893 R 1171376 CDS YP_007902969.1 482904409 complement(1958960..1959274) 1 NC_021151.1 minor tail-like protein 1959274 1171376001889 STU288_09350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 minor tail-like protein YP_007902969.1 1958960 R 1171376 CDS YP_007902970.1 482904410 complement(1959295..1959690) 1 NC_021151.1 Minor tail protein G 1959690 1171376001890 STU288_09355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein G YP_007902970.1 1959295 R 1171376 CDS YP_007902971.1 482904411 complement(1959741..1960484) 1 NC_021151.1 COG5492 Bacterial surface proteins containing Ig-like domains; bacteriophage protein 1960484 1171376001891 STU288_09360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007902971.1 1959741 R 1171376 CDS YP_007902972.1 482904412 complement(1960495..1960896) 1 NC_021151.1 Minor tail protein U 1960896 1171376001892 STU288_09365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein U YP_007902972.1 1960495 R 1171376 CDS YP_007902973.1 482904413 1961005..1962135 1 NC_021151.1 COG0675 Transposase and inactivated derivatives; putative 45.4 kDa protein in snaA-snaB intergenic region 1962135 1171376001893 STU288_09370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative 45.4 kDa protein in snaA-snaB intergenic region YP_007902973.1 1961005 D 1171376 CDS YP_007902974.1 482904414 complement(1962184..1962762) 1 NC_021151.1 Minor tail protein Z GpZ 1962762 1171376001894 STU288_09375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Minor tail protein Z GpZ YP_007902974.1 1962184 R 1171376 CDS YP_007902975.1 482904415 complement(1962790..1963173) 1 NC_021151.1 minor capsid protein FII 1963173 1171376001895 STU288_09380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 minor capsid protein FII YP_007902975.1 1962790 R 1171376 CDS YP_007902976.1 482904416 complement(1963184..1963543) 1 NC_021151.1 putative 13.5 kDa protein in GP7-GP8 intergenic region 1963543 1171376001896 STU288_09385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative 13.5 kDa protein in GP7-GP8 intergenic region YP_007902976.1 1963184 R 1171376 CDS YP_007902977.1 482904417 complement(1963601..1964629) 1 NC_021151.1 P21 prophage-derived major head protein Head protein gp7 1964629 1171376001897 STU288_09390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 P21 prophage-derived major head protein Head protein gp7 YP_007902977.1 1963601 R 1171376 CDS YP_007902978.1 482904418 complement(1964684..1965031) 1 NC_021151.1 bacteriophage lambda head decoration protein D 1965031 1171376001898 STU288_09395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage lambda head decoration protein D YP_007902978.1 1964684 R 1171376 CDS YP_007902979.1 482904419 complement(1965044..1966540) 1 NC_021151.1 COG0616 Periplasmic serine proteases (ClpP class); Head-tail preconnector protein GP5 1966540 1171376001899 STU288_09400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Head-tail preconnector protein GP5 YP_007902979.1 1965044 R 1171376 CDS YP_007902980.1 482904420 complement(1966530..1968110) 1 NC_021151.1 COG5511 Bacteriophage capsid protein; phage portal protein, lambda family 1968110 1171376001900 STU288_09405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage portal protein, lambda family YP_007902980.1 1966530 R 1171376 CDS YP_007902981.1 482904421 complement(1968107..1968310) 1 NC_021151.1 Lambda prophage-derived head-to-tail joining protein W gpW 1968310 1171376001901 STU288_09410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Lambda prophage-derived head-to-tail joining protein W gpW YP_007902981.1 1968107 R 1171376 CDS YP_007902982.1 482904422 complement(1968294..1970225) 1 NC_021151.1 COG5525 Bacteriophage tail assembly protein; Terminase large subunit Gp2 1970225 1171376001902 STU288_09415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Terminase large subunit Gp2 YP_007902982.1 1968294 R 1171376 CDS YP_007902983.1 482904423 complement(1970197..1970742) 1 NC_021151.1 COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; P21 prophage-derived terminase small subunit Gp1 1970742 1171376001903 STU288_09420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 P21 prophage-derived terminase small subunit Gp1 YP_007902983.1 1970197 R 1171376 CDS YP_007902984.1 482904424 1971029..1971430 1 NC_021151.1 hypothetical protein 1971430 1171376001904 STU288_09425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902984.1 1971029 D 1171376 CDS YP_007902985.1 482904425 complement(1971666..1972145) 1 NC_021151.1 putative endopeptidase 1972145 1171376001905 STU288_09430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative endopeptidase YP_007902985.1 1971666 R 1171376 CDS YP_007902986.1 482904426 complement(1972142..1972591) 1 NC_021151.1 COG3772 Phage-related lysozyme (muraminidase); morphogenesis-like protein 1972591 1171376001906 STU288_09435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 morphogenesis-like protein YP_007902986.1 1972142 R 1171376 CDS YP_007902987.1 482904427 complement(1972578..1972913) 1 NC_021151.1 putative bacteriophage holin 1972913 1171376001907 STU288_09440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative bacteriophage holin YP_007902987.1 1972578 R 1171376 CDS YP_007902988.1 482904428 1973183..1973863 1 NC_021151.1 hypothetical protein 1973863 1171376001908 STU288_09445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902988.1 1973183 D 1171376 CDS YP_007902989.1 482904429 complement(1973890..1974075) 1 NC_021151.1 COG3436 Transposase and inactivated derivatives; hypothetical protein 1974075 1171376001909 STU288_09450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902989.1 1973890 R 1171376 CDS YP_007902990.1 482904430 complement(1974183..1975460) 1 NC_021151.1 COG3436 Transposase and inactivated derivatives; hypothetical protein 1975460 1171376001910 STU288_09455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902990.1 1974183 R 1171376 CDS YP_007902991.1 482904431 complement(1975480..1975827) 1 NC_021151.1 COG3436 Transposase and inactivated derivatives; putative transposase subunit 1975827 1171376001911 STU288_09460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase subunit YP_007902991.1 1975480 R 1171376 CDS YP_007902992.1 482904432 complement(1975827..1976504) 1 NC_021151.1 COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA 1976504 1171376001912 STU288_09465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IS66 family transposase orfA YP_007902992.1 1975827 R 1171376 CDS YP_007902993.1 482904433 complement(1976790..1976978) 1 NC_021151.1 hypothetical protein 1976978 1171376001913 STU288_09470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902993.1 1976790 R 1171376 CDS YP_007902994.1 482904434 complement(1977485..1978048) 1 NC_021151.1 antirepressor-like protein 1978048 1171376001915 STU288_09475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antirepressor-like protein YP_007902994.1 1977485 R 1171376 CDS YP_007902995.1 482904435 complement(1978321..1978998) 1 NC_021151.1 Antitermination protein Q 1978998 1171376001916 STU288_09480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Antitermination protein Q YP_007902995.1 1978321 R 1171376 CDS YP_007902996.1 482904436 complement(1978995..1979135) 1 NC_021151.1 Gifsy-1 prophage protein 1979135 1171376001917 STU288_09485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-1 prophage protein YP_007902996.1 1978995 R 1171376 CDS YP_007902997.1 482904437 complement(1979132..1979743) 1 NC_021151.1 Protein ninG 1979743 1171376001918 STU288_09490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein ninG YP_007902997.1 1979132 R 1171376 CDS YP_007902998.1 482904438 complement(1979952..1980572) 1 NC_021151.1 hypothetical protein 1980572 1171376001919 STU288_09495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007902998.1 1979952 R 1171376 CDS YP_007902999.1 482904439 complement(1980969..1981202) 1 NC_021151.1 COG1344 Flagellin and related hook-associated proteins; DNA-damage-inducible protein I 1981202 1171376001920 STU288_09500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-damage-inducible protein I YP_007902999.1 1980969 R 1171376 CDS YP_007903000.1 482904440 complement(1981494..1981763) 1 NC_021151.1 hypothetical protein 1981763 1171376001921 STU288_09505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903000.1 1981494 R 1171376 CDS YP_007903001.1 482904441 complement(1981862..1982173) 1 NC_021151.1 conserved hypothetical bacteriophage protein 1982173 1171376001922 STU288_09510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conserved hypothetical bacteriophage protein YP_007903001.1 1981862 R 1171376 CDS YP_007903002.1 482904442 complement(1982170..1982517) 1 NC_021151.1 putative DNA-binding protein 1982517 1171376001923 STU288_09515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA-binding protein YP_007903002.1 1982170 R 1171376 CDS YP_007903003.1 482904443 complement(1982528..1983277) 1 NC_021151.1 COG1484 DNA replication protein; replication protein 1983277 1171376001924 STU288_09520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein YP_007903003.1 1982528 R 1171376 CDS YP_007903004.1 482904444 complement(1983280..1984263) 1 NC_021151.1 gifsy-1 prophage PrpO 1984263 1171376001925 STU288_09525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage PrpO YP_007903004.1 1983280 R 1171376 CDS YP_007903005.1 482904445 complement(1984348..1984497) 1 NC_021151.1 Gifsy-1 prophage cI protein 1984497 1171376001926 STU288_09530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-1 prophage cI protein YP_007903005.1 1984348 R 1171376 CDS YP_007903006.1 482904446 complement(1984688..1984927) 1 NC_021151.1 hypothetical protein 1984927 1171376001927 STU288_09535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903006.1 1984688 R 1171376 CDS YP_007903007.1 482904447 1985041..1985457 1 NC_021151.1 COG1396 Predicted transcriptional regulators; regulatory protein 1985457 1171376001928 STU288_09540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007903007.1 1985041 D 1171376 CDS YP_007903008.1 482904448 1985760..1985921 1 NC_021151.1 Gifsy-1 prophage protein 1985921 1171376001929 STU288_09545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-1 prophage protein YP_007903008.1 1985760 D 1171376 CDS YP_007903009.1 482904449 1985939..1986289 1 NC_021151.1 hypothetical protein 1986289 1171376001930 STU288_09550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903009.1 1985939 D 1171376 CDS YP_007903010.1 482904450 1986416..1989343 1 NC_021151.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; gifsy-1 prophage RecE 1989343 1171376001931 STU288_09555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gifsy-1 prophage RecE YP_007903010.1 1986416 D 1171376 CDS YP_007903011.1 482904451 1989354..1990463 1 NC_021151.1 Gifsy-2 prophage RecT 1990463 1171376001932 STU288_09560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gifsy-2 prophage RecT YP_007903011.1 1989354 D 1171376 CDS YP_007903012.1 482904452 1990506..1990745 1 NC_021151.1 putative cytoplasmic protein 1990745 1171376001933 STU288_09565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903012.1 1990506 D 1171376 CDS YP_007903013.1 482904453 1990786..1991034 1 NC_021151.1 excisionase 1991034 1171376001934 STU288_09570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excisionase YP_007903013.1 1990786 D 1171376 CDS YP_007903014.1 482904454 1991079..1992371 1 NC_021151.1 COG0582 Integrase; bacteriophage integrase 1992371 1171376001935 STU288_09575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage integrase YP_007903014.1 1991079 D 1171376 CDS YP_007903015.1 482904455 1992566..1993768 1 NC_021151.1 COG1488 Nicotinic acid phosphoribosyltransferase; nicotinate phosphoribosyltransferase 1993768 1171376001936 STU288_09580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nicotinate phosphoribosyltransferase YP_007903015.1 1992566 D 1171376 CDS YP_007903016.1 482904456 complement(1993846..1995282) 1 NC_021151.1 COG1115 Na+/alanine symporter; ion:amino acid symporter 1995282 1171376001937 STU288_09585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ion:amino acid symporter YP_007903016.1 1993846 R 1171376 CDS YP_007903017.1 482904457 complement(1995527..1996741) 1 NC_021151.1 COG1171 Threonine dehydratase; diaminopropionate ammonia-lyase 1996741 1171376001938 STU288_09590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diaminopropionate ammonia-lyase YP_007903017.1 1995527 R 1171376 CDS YP_007903018.1 482904458 1996828..1997061 1 NC_021151.1 hypothetical protein 1997061 1171376001939 STU288_09595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903018.1 1996828 D 1171376 CDS YP_007903019.1 482904459 1997058..1997519 1 NC_021151.1 COG1522 Transcriptional regulators; putative HTH-type transcriptional regulator ybaO 1997519 1171376001940 STU288_09600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator ybaO YP_007903019.1 1997058 D 1171376 CDS YP_007903020.1 482904460 1997720..1999120 1 NC_021151.1 COG0017 Aspartyl/asparaginyl-tRNA synthetases; asparaginyl-tRNA ligase 1999120 asnC 1171376001941 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 asparaginyl-tRNA ligase YP_007903020.1 1997720 D 1171376 CDS YP_007903021.1 482904461 1999727..2000818 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane protein F 2000818 1171376001942 STU288_09610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein F YP_007903021.1 1999727 D 1171376 CDS YP_007903022.1 482904462 2001003..2002193 1 NC_021151.1 COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 2002193 1171376001943 STU288_09615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aromatic amino acid aminotransferase YP_007903022.1 2001003 D 1171376 CDS YP_007903023.1 482904463 complement(2002255..2002902) 1 NC_021151.1 COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase 2002902 1171376001944 STU288_09620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxyacylglutathione hydrolase YP_007903023.1 2002255 R 1171376 CDS YP_007903024.1 482904464 complement(2002930..2003478) 1 NC_021151.1 COG3108 Uncharacterized protein conserved in bacteria; hypothetical protein 2003478 1171376001945 STU288_09625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903024.1 2002930 R 1171376 CDS YP_007903025.1 482904465 complement(2003738..2005579) 1 NC_021151.1 COG2989 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 2005579 1171376001946 STU288_09630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein L,D-transpeptidase YP_007903025.1 2003738 R 1171376 CDS YP_007903026.1 482904466 complement(2005924..2010390) 1 NC_021151.1 COG3096 Uncharacterized protein involved in chromosome partitioning; cell division protein MukB 2010390 mukB 1171376001947 mukB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein MukB YP_007903026.1 2005924 R 1171376 CDS YP_007903027.1 482904467 complement(2010390..2011094) 1 NC_021151.1 COG3095 Uncharacterized protein involved in chromosome partitioning; condesin subunit E 2011094 1171376001948 STU288_09640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 condesin subunit E YP_007903027.1 2010390 R 1171376 CDS YP_007903028.1 482904468 complement(2011075..2012397) 1 NC_021151.1 COG3006 Uncharacterized protein involved in chromosome partitioning; condesin subunit F 2012397 1171376001949 STU288_09645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 condesin subunit F YP_007903028.1 2011075 R 1171376 CDS YP_007903029.1 482904469 complement(2012390..2013193) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; S-adenosyl-L-methionine-dependent methyltransferase 2013193 1171376001950 STU288_09650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-adenosyl-L-methionine-dependent methyltransferase YP_007903029.1 2012390 R 1171376 CDS YP_007903030.1 482904470 2013329..2014105 1 NC_021151.1 COG1434 Uncharacterized conserved protein; hypothetical protein 2014105 1171376001951 STU288_09655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903030.1 2013329 D 1171376 CDS YP_007903031.1 482904471 complement(2014085..2014978) 1 NC_021151.1 hypothetical protein 2014978 1171376001952 STU288_09660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903031.1 2014085 R 1171376 CDS YP_007903032.1 482904472 complement(2015189..2015935) 1 NC_021151.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase 2015935 1171376001953 STU288_09665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-deoxy-manno-octulosonate cytidylyltransferase YP_007903032.1 2015189 R 1171376 CDS YP_007903033.1 482904473 complement(2015932..2016114) 1 NC_021151.1 COG2835 Uncharacterized conserved protein; hypothetical protein 2016114 1171376001954 STU288_09670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903033.1 2015932 R 1171376 CDS YP_007903034.1 482904474 complement(2016166..2017398) 1 NC_021151.1 COG3214 Uncharacterized protein conserved in bacteria; hypothetical protein 2017398 1171376001955 STU288_09675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903034.1 2016166 R 1171376 CDS YP_007903035.1 482904475 complement(2017442..2018419) 1 NC_021151.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2018419 lpxK 1171376001956 lpxK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetraacyldisaccharide 4'-kinase YP_007903035.1 2017442 R 1171376 CDS YP_007903036.1 482904476 complement(2018416..2020164) 1 NC_021151.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; lipid transporter ATP-binding/permease protein 2020164 1171376001957 STU288_09685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipid transporter ATP-binding/permease protein YP_007903036.1 2018416 R 1171376 CDS YP_007903037.1 482904477 complement(2020201..2022465) 1 NC_021151.1 COG0658 Predicted membrane metal-binding protein; ComEC family competence protein 2022465 1171376001958 STU288_09690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ComEC family competence protein YP_007903037.1 2020201 R 1171376 CDS YP_007903038.1 482904478 complement(2022695..2022979) 1 NC_021151.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit beta 2022979 ihfB 1171376001959 ihfB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integration host factor subunit beta YP_007903038.1 2022695 R 1171376 CDS YP_007903039.1 482904479 complement(2023135..2024808) 1 NC_021151.1 COG0539 Ribosomal protein S1; 30S ribosomal protein S1 2024808 rpsA 1171376001960 rpsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S1 YP_007903039.1 2023135 R 1171376 CDS YP_007903040.1 482904480 complement(2024922..2025605) 1 NC_021151.1 COG0283 Cytidylate kinase; cytidylate kinase 2025605 cmk 1171376001961 cmk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytidylate kinase YP_007903040.1 2024922 R 1171376 CDS YP_007903041.1 482904481 complement(2025778..2026539) 1 NC_021151.1 COG0501 Zn-dependent protease with chaperone function; lipoprotein 2026539 1171376001962 STU288_09710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903041.1 2025778 R 1171376 CDS YP_007903042.1 482904482 complement(2026682..2027965) 1 NC_021151.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 2027965 1171376001963 STU288_09715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-phosphoshikimate 1-carboxyvinyltransferase YP_007903042.1 2026682 R 1171376 CDS YP_007903043.1 482904483 complement(2028036..2029124) 1 NC_021151.1 COG1932 Phosphoserine aminotransferase; 3-phosphoserine/phosphohydroxythreonine aminotransferase 2029124 1171376001964 STU288_09720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-phosphoserine/phosphohydroxythreonine aminotransferase YP_007903043.1 2028036 R 1171376 CDS YP_007903044.1 482904484 complement(2029310..2030002) 1 NC_021151.1 COG2323 Predicted membrane protein; hypothetical protein 2030002 1171376001965 STU288_09725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903044.1 2029310 R 1171376 CDS YP_007903045.1 482904485 2030139..2031899 1 NC_021151.1 COG1944 Uncharacterized conserved protein; hypothetical protein 2031899 1171376001966 STU288_09730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903045.1 2030139 D 1171376 CDS YP_007903046.1 482904486 2032304..2033161 1 NC_021151.1 COG2116 Formate/nitrite family of transporters; formate transporter 2033161 1171376001967 STU288_09735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate transporter YP_007903046.1 2032304 D 1171376 CDS YP_007903047.1 482904487 2033221..2035503 1 NC_021151.1 COG1882 Pyruvate-formate lyase; pyruvate formate-lyase 2035503 1171376001968 STU288_09740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate formate-lyase YP_007903047.1 2033221 D 1171376 CDS YP_007903048.1 482904488 complement(2035579..2036538) 1 NC_021151.1 pathogenicity island 1 protein SopD2 2036538 1171376001969 STU288_09745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 protein SopD2 YP_007903048.1 2035579 R 1171376 CDS YP_007903049.1 482904489 2036828..2036995 1 NC_021151.1 hypothetical protein 2036995 1171376001970 STU288_09750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903049.1 2036828 D 1171376 CDS YP_007903050.1 482904490 2037114..2037911 1 NC_021151.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase-activating enzyme 1 2037911 pflA 1171376001971 pflA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate formate lyase-activating enzyme 1 YP_007903050.1 2037114 D 1171376 CDS YP_007903051.1 482904491 complement(2038204..2039625) 1 NC_021151.1 COG0531 Amino acid transporters; transport protein 2039625 1171376001972 STU288_09760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transport protein YP_007903051.1 2038204 R 1171376 CDS YP_007903052.1 482904492 complement(2039843..2040991) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; MFS family transporter protein 2040991 1171376001973 STU288_09765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MFS family transporter protein YP_007903052.1 2039843 R 1171376 CDS YP_007903053.1 482904493 complement(2041341..2042204) 1 NC_021151.1 COG3302 DMSO reductase anchor subunit; Anaerobic dimethyl sulfoxide reductase chain C DMSO reductase anchor subunit 2042204 1171376001974 STU288_09770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Anaerobic dimethyl sulfoxide reductase chain C DMSO reductase anchor subunit YP_007903053.1 2041341 R 1171376 CDS YP_007903054.1 482904494 complement(2042206..2042823) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; dimethylsulfoxide reductase subunit B 2042823 1171376001975 STU288_09775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dimethylsulfoxide reductase subunit B YP_007903054.1 2042206 R 1171376 CDS YP_007903055.1 482904495 complement(2042834..2045278) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase subunit A 2045278 1171376001976 STU288_09780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic dimethyl sulfoxide reductase subunit A YP_007903055.1 2042834 R 1171376 CDS YP_007903056.1 482904496 complement(2045515..2046807) 1 NC_021151.1 COG0172 Seryl-tRNA synthetase; seryl-tRNA ligase 2046807 1171376001977 STU288_09785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 seryl-tRNA ligase YP_007903056.1 2045515 R 1171376 CDS YP_007903057.1 482904497 complement(2047066..2048409) 1 NC_021151.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 2048409 1171376001978 STU288_09790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination factor protein RarA YP_007903057.1 2047066 R 1171376 CDS YP_007903058.1 482904498 complement(2048419..2049030) 1 NC_021151.1 COG2834 Outer membrane lipoprotein-sorting protein; lipoprotein chaperone 2049030 lolA 1171376001979 lolA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein chaperone YP_007903058.1 2048419 R 1171376 CDS YP_007903059.1 482904499 complement(2049173..2053228) 1 NC_021151.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase FtsK 2053228 1171376001980 STU288_09800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA translocase FtsK YP_007903059.1 2049173 R 1171376 CDS YP_007903060.1 482904500 complement(2053363..2053857) 1 NC_021151.1 COG1522 Transcriptional regulators; leucine-responsive transcriptional regulator 2053857 1171376001981 STU288_09805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine-responsive transcriptional regulator YP_007903060.1 2053363 R 1171376 CDS YP_007903061.1 482904501 2054403..2055371 1 NC_021151.1 COG0492 Thioredoxin reductase; thioredoxin reductase 2055371 1171376001982 STU288_09810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioredoxin reductase YP_007903061.1 2054403 D 1171376 CDS YP_007903062.1 482904502 2055485..2057251 1 NC_021151.1 COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 2057251 1171376001983 STU288_09815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_007903062.1 2055485 D 1171376 CDS YP_007903063.1 482904503 2057252..2058973 1 NC_021151.1 COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 2058973 1171376001984 STU288_09820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_007903063.1 2057252 D 1171376 CDS YP_007903064.1 482904504 2059018..2059722 1 NC_021151.1 COG2360 Leu/Phe-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase 2059722 aat 1171376001985 aat Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucyl/phenylalanyl-tRNA--protein transferase YP_007903064.1 2059018 D 1171376 CDS YP_007903065.1 482904505 2060034..2060252 1 NC_021151.1 COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 2060252 1171376001986 STU288_09830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translation initiation factor IF-1 YP_007903065.1 2060034 D 1171376 CDS YP_007903066.1 482904506 complement(2060343..2061254) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2061254 1171376001987 STU288_09835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903066.1 2060343 R 1171376 CDS YP_007903067.1 482904507 2061363..2062223 1 NC_021151.1 COG1741 Pirin-related protein; Cupin/Pirin 2062223 1171376001988 STU288_09840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cupin/Pirin YP_007903067.1 2061363 D 1171376 CDS YP_007903068.1 482904508 2062243..2062920 1 NC_021151.1 COG1335 Amidases related to nicotinamidase; hypothetical protein 2062920 1171376001989 STU288_09845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903068.1 2062243 D 1171376 CDS YP_007903069.1 482904509 2063257..2063658 1 NC_021151.1 ISPsy11, transposase OrfA 2063658 1171376001991 STU288_09850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ISPsy11, transposase OrfA YP_007903069.1 2063257 D 1171376 CDS YP_007903070.1 482904510 2063829..2064512 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; integrase protein 2064512 1171376001992 STU288_09855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase protein YP_007903070.1 2063829 D 1171376 CDS YP_007903071.1 482904511 complement(2064975..2065433) 1 NC_021151.1 COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 2065433 1171376001993 STU288_09860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase for insertion sequence element IS200 YP_007903071.1 2064975 R 1171376 CDS YP_007903072.1 482904512 complement(2065625..2067901) 1 NC_021151.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 2067901 clpA 1171376001994 clpA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent Clp protease ATP-binding subunit YP_007903072.1 2065625 R 1171376 CDS YP_007903073.1 482904513 complement(2067932..2068252) 1 NC_021151.1 COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adaptor protein ClpS 2068252 clpS 1171376001995 clpS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent Clp protease adaptor protein ClpS YP_007903073.1 2067932 R 1171376 CDS YP_007903074.1 482904514 2068576..2068797 1 NC_021151.1 COG1278 Cold shock proteins; cold shock-like protein CspD 2068797 1171376001996 STU288_09875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cold shock-like protein CspD YP_007903074.1 2068576 D 1171376 CDS YP_007903075.1 482904515 complement(2068927..2070873) 1 NC_021151.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; macrolide transporter ATP-binding /permease protein 2070873 1171376001997 STU288_09880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 macrolide transporter ATP-binding /permease protein YP_007903075.1 2068927 R 1171376 CDS YP_007903076.1 482904516 complement(2070870..2071988) 1 NC_021151.1 COG0845 Membrane-fusion protein; macrolide transporter subunit MacA 2071988 1171376001998 STU288_09885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 macrolide transporter subunit MacA YP_007903076.1 2070870 R 1171376 CDS YP_007903077.1 482904517 2072134..2073084 1 NC_021151.1 COG2990 Uncharacterized protein conserved in bacteria; hypothetical protein 2073084 1171376001999 STU288_09890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903077.1 2072134 D 1171376 CDS YP_007903078.1 482904518 complement(2073081..2074739) 1 NC_021151.1 COG3593 Predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease 2074739 1171376002000 STU288_09895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent OLD family endonuclease YP_007903078.1 2073081 R 1171376 CDS YP_007903079.1 482904519 2074941..2075840 1 NC_021151.1 COG2431 Predicted membrane protein; hypothetical protein 2075840 1171376002001 STU288_09900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903079.1 2074941 D 1171376 CDS YP_007903080.1 482904520 2075984..2077636 1 NC_021151.1 COG1151 6Fe-6S prismane cluster-containing protein; hybrid cluster protein 2077636 1171376002002 STU288_09905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hybrid cluster protein YP_007903080.1 2075984 D 1171376 CDS YP_007903081.1 482904521 2077648..2078616 1 NC_021151.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; HCP oxidoreductase, NADH-dependent 2078616 1171376002003 STU288_09910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HCP oxidoreductase, NADH-dependent YP_007903081.1 2077648 D 1171376 CDS YP_007903082.1 482904522 2078774..2080492 1 NC_021151.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate dehydrogenase 2080492 1171376002004 STU288_09915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate dehydrogenase YP_007903082.1 2078774 D 1171376 CDS YP_007903083.1 482904523 2080531..2081532 1 NC_021151.1 COG2008 Threonine aldolase; L-threonine aldolase 2081532 1171376002005 STU288_09920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-threonine aldolase YP_007903083.1 2080531 D 1171376 CDS YP_007903084.1 482904524 2081543..2082976 1 NC_021151.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; Atypical SDR 2082976 1171376002006 STU288_09925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Atypical SDR YP_007903084.1 2081543 D 1171376 CDS YP_007903085.1 482904525 2083072..2084085 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; 3 beta-hydroxysteroid dehydrogenase/Delta 5->4-isomerase type 1 3-beta-HSD I 2084085 1171376002007 STU288_09930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3 beta-hydroxysteroid dehydrogenase/Delta 5->4-isomerase type 1 3-beta-HSD I YP_007903085.1 2083072 D 1171376 CDS YP_007903086.1 482904526 complement(2084082..2084912) 1 NC_021151.1 COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase AmiD 2084912 1171376002008 STU288_09935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmuramoyl-L-alanine amidase AmiD YP_007903086.1 2084082 R 1171376 CDS YP_007903087.1 482904527 complement(2084909..2085232) 1 NC_021151.1 COG0393 Uncharacterized conserved protein; hypothetical protein 2085232 1171376002009 STU288_09940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903087.1 2084909 R 1171376 CDS YP_007903088.1 482904528 2085360..2085875 1 NC_021151.1 lipoprotein 2085875 1171376002010 STU288_09945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903088.1 2085360 D 1171376 CDS YP_007903089.1 482904529 2086105..2086833 1 NC_021151.1 COG4161 ABC-type arginine transport system, ATPase component; arginine transporter ATP-binding subunit 2086833 artP 1171376002011 artP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine transporter ATP-binding subunit YP_007903089.1 2086105 D 1171376 CDS YP_007903090.1 482904530 2086851..2087582 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter arginine-biding protein 2087582 1171376002012 STU288_09955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter arginine-biding protein YP_007903090.1 2086851 D 1171376 CDS YP_007903091.1 482904531 2087589..2088305 1 NC_021151.1 COG4215 ABC-type arginine transport system, permease component; arginine transporter permease subunit ArtQ 2088305 1171376002013 STU288_09960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine transporter permease subunit ArtQ YP_007903091.1 2087589 D 1171376 CDS YP_007903092.1 482904532 2088305..2088973 1 NC_021151.1 COG4160 ABC-type arginine/histidine transport system, permease component; arginine transporter permease subunit ArtM 2088973 artM 1171376002014 artM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine transporter permease subunit ArtM YP_007903092.1 2088305 D 1171376 CDS YP_007903093.1 482904533 2089210..2089941 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter periplasmic arginine-binding protein ArtJ 2089941 1171376002015 STU288_09970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine ABC transporter periplasmic arginine-binding protein ArtJ YP_007903093.1 2089210 D 1171376 CDS YP_007903094.1 482904534 complement(2090160..2091647) 1 NC_021151.1 COG3119 Arylsulfatase A and related enzymes; sulfatase 2091647 1171376002016 STU288_09975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfatase YP_007903094.1 2090160 R 1171376 CDS YP_007903095.1 482904535 complement(2091657..2091977) 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; putative phosphotransferase enzyme II, B component 2091977 1171376002017 STU288_09980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phosphotransferase enzyme II, B component YP_007903095.1 2091657 R 1171376 CDS YP_007903096.1 482904536 complement(2092007..2093350) 1 NC_021151.1 COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 2093350 1171376002018 STU288_09985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system ascorbate-specific transporter subunit IIC YP_007903096.1 2092007 R 1171376 CDS YP_007903097.1 482904537 complement(2093633..2094763) 1 NC_021151.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase 2094763 rumB 1171376002019 rumB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA methyluridine methyltransferase YP_007903097.1 2093633 R 1171376 CDS YP_007903098.1 482904538 complement(2094806..2095279) 1 NC_021151.1 hypothetical protein 2095279 1171376002020 STU288_09995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903098.1 2094806 R 1171376 CDS YP_007903099.1 482904539 complement(2095353..2096198) 1 NC_021151.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; putrescine transporter subunit: membrane component of ABC superfamily 2096198 1171376002021 STU288_10000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine transporter subunit: membrane component of ABC superfamily YP_007903099.1 2095353 R 1171376 CDS YP_007903100.1 482904540 complement(2096195..2097148) 1 NC_021151.1 COG1176 ABC-type spermidine/putrescine transport system, permease component I; putrescine transporter subunit: membrane component of ABC superfamily 2097148 1171376002022 STU288_10005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine transporter subunit: membrane component of ABC superfamily YP_007903100.1 2096195 R 1171376 CDS YP_007903101.1 482904541 complement(2097158..2098291) 1 NC_021151.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine transporter ATP-binding subunit 2098291 potG 1171376002023 potG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine transporter ATP-binding subunit YP_007903101.1 2097158 R 1171376 CDS YP_007903102.1 482904542 complement(2098379..2099491) 1 NC_021151.1 COG0687 Spermidine/putrescine-binding periplasmic protein; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 2099491 1171376002024 STU288_10015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_007903102.1 2098379 R 1171376 CDS YP_007903103.1 482904543 complement(2099840..2100316) 1 NC_021151.1 hypothetical protein 2100316 1171376002025 STU288_10020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903103.1 2099840 R 1171376 CDS YP_007903104.1 482904544 complement(2100413..2101315) 1 NC_021151.1 COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); ribosomal protein S6 modification protein 2101315 1171376002026 STU288_10025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal protein S6 modification protein YP_007903104.1 2100413 R 1171376 CDS YP_007903105.1 482904545 complement(2101373..2102095) 1 NC_021151.1 COG0778 Nitroreductase; nitroreductase A 2102095 1171376002027 STU288_10030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitroreductase A YP_007903105.1 2101373 R 1171376 CDS YP_007903106.1 482904546 complement(2102079..2102369) 1 NC_021151.1 hypothetical protein 2102369 1171376002028 STU288_10035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903106.1 2102079 R 1171376 CDS YP_007903107.1 482904547 2102539..2102802 1 NC_021151.1 COG0695 Glutaredoxin and related proteins; glutaredoxin 1 2102802 grxA 1171376002029 grxA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaredoxin 1 YP_007903107.1 2102539 D 1171376 CDS YP_007903108.1 482904548 complement(2102834..2103211) 1 NC_021151.1 Inner membrane protein ybjM 2103211 1171376002030 STU288_10045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein ybjM YP_007903108.1 2102834 R 1171376 CDS YP_007903109.1 482904549 2103482..2105167 1 NC_021151.1 COG2985 Predicted permease; transporter 2105167 1171376002031 STU288_10050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007903109.1 2103482 D 1171376 CDS YP_007903110.1 482904550 complement(2105284..2105904) 1 NC_021151.1 COG3226 Uncharacterized protein conserved in bacteria; tetR-family transcriptional regulator 2105904 1171376002032 STU288_10055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetR-family transcriptional regulator YP_007903110.1 2105284 R 1171376 CDS YP_007903111.1 482904551 2106072..2107283 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein/regulator 2107283 1171376002033 STU288_10060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein/regulator YP_007903111.1 2106072 D 1171376 CDS YP_007903112.1 482904552 2107280..2108095 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein 2108095 1171376002034 STU288_10065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903112.1 2107280 D 1171376 CDS YP_007903113.1 482904553 complement(2108149..2109381) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system translocase MdfA 2109381 1171376002035 STU288_10070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system translocase MdfA YP_007903113.1 2108149 R 1171376 CDS YP_007903114.1 482904554 2109694..2110302 1 NC_021151.1 COG0671 Membrane-associated phospholipid phosphatase; undecaprenyl pyrophosphate phosphatase 2110302 1171376002036 STU288_10075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl pyrophosphate phosphatase YP_007903114.1 2109694 D 1171376 CDS YP_007903115.1 482904555 2110374..2111132 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor DeoR 2111132 1171376002037 STU288_10080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor DeoR YP_007903115.1 2110374 D 1171376 CDS YP_007903116.1 482904556 complement(2111177..2112379) 1 NC_021151.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction C 2112379 1171376002038 STU288_10085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine carboxypeptidase fraction C YP_007903116.1 2111177 R 1171376 CDS YP_007903117.1 482904557 2112623..2113249 1 NC_021151.1 COG0625 Glutathione S-transferase; Glutathione S-transferase 1-1 GST class-theta 2113249 1171376002039 STU288_10090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glutathione S-transferase 1-1 GST class-theta YP_007903117.1 2112623 D 1171376 CDS YP_007903118.1 482904558 complement(2113246..2113926) 1 NC_021151.1 COG3677 Transposase and inactivated derivatives; hypothetical protein 2113926 1171376002040 STU288_10095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903118.1 2113246 R 1171376 CDS YP_007903119.1 482904559 2114273..2114698 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; inner membrane protein 2114698 1171376002041 STU288_10100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007903119.1 2114273 D 1171376 CDS YP_007903120.1 482904560 2114963..2115853 1 NC_021151.1 COG0583 Transcriptional regulator; LysR transcriptional regulator 2115853 1171376002042 STU288_10105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR transcriptional regulator YP_007903120.1 2114963 D 1171376 CDS YP_007903121.1 482904561 complement(2115859..2117544) 1 NC_021151.1 COG0644 Dehydrogenases (flavoproteins); Electron transfer flavoprotein-ubiquinone oxidoreductase 2117544 1171376002043 STU288_10110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Electron transfer flavoprotein-ubiquinone oxidoreductase YP_007903121.1 2115859 R 1171376 CDS YP_007903122.1 482904562 complement(2117993..2119156) 1 NC_021151.1 COG1960 Acyl-CoA dehydrogenases; putative acyl-CoA dehydrogenase 2119156 1171376002044 STU288_10115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acyl-CoA dehydrogenase YP_007903122.1 2117993 R 1171376 CDS YP_007903123.1 482904563 complement(2119220..2119417) 1 NC_021151.1 hypothetical protein 2119417 1171376002045 STU288_10120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903123.1 2119220 R 1171376 CDS YP_007903124.1 482904564 complement(2119450..2120397) 1 NC_021151.1 COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2120397 1171376002046 STU288_10125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron transfer flavoprotein subunit alpha YP_007903124.1 2119450 R 1171376 CDS YP_007903125.1 482904565 complement(2120408..2121157) 1 NC_021151.1 COG2086 Electron transfer flavoprotein, beta subunit; putative electron transfer protein beta subunit 2121157 1171376002047 STU288_10130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative electron transfer protein beta subunit YP_007903125.1 2120408 R 1171376 CDS YP_007903126.1 482904566 complement(2121180..2121695) 1 NC_021151.1 COG2301 Citrate lyase beta subunit; citrate lyase 2121695 1171376002048 STU288_10135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase YP_007903126.1 2121180 R 1171376 CDS YP_007903127.1 482904567 complement(2122408..2122791) 1 NC_021151.1 biofilm formation regulatory protein BssR 2122791 bssR 1171376002049 bssR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biofilm formation regulatory protein BssR YP_007903127.1 2122408 R 1171376 CDS YP_007903128.1 482904568 2123022..2124347 1 NC_021151.1 COG0621 2-methylthioadenine synthetase; ribosomal protein S12 methylthiotransferase 2124347 rimO 1171376002050 rimO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal protein S12 methylthiotransferase YP_007903128.1 2123022 D 1171376 CDS YP_007903129.1 482904569 complement(2124438..2125349) 1 NC_021151.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiD 2125349 1171376002051 STU288_10150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione ABC transporter permease GsiD YP_007903129.1 2124438 R 1171376 CDS YP_007903130.1 482904570 complement(2125352..2126272) 1 NC_021151.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiC 2126272 1171376002052 STU288_10155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione ABC transporter permease GsiC YP_007903130.1 2125352 R 1171376 CDS YP_007903131.1 482904571 complement(2126333..2127871) 1 NC_021151.1 COG0747 ABC-type dipeptide transport system, periplasmic component; glutathione ABC transporter substrate-binding protein GsiB 2127871 1171376002053 STU288_10160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione ABC transporter substrate-binding protein GsiB YP_007903131.1 2126333 R 1171376 CDS YP_007903132.1 482904572 complement(2127904..2129775) 1 NC_021151.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; glutathione transporter ATP-binding protein 2129775 1171376002054 STU288_10165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione transporter ATP-binding protein YP_007903132.1 2127904 R 1171376 CDS YP_007903133.1 482904573 complement(2129786..2130727) 1 NC_021151.1 COG1446 Asparaginase; isoaspartyl peptidase 2130727 1171376002055 STU288_10170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isoaspartyl peptidase YP_007903133.1 2129786 R 1171376 CDS YP_007903134.1 482904574 2130930..2132165 1 NC_021151.1 COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein MoeA 2132165 1171376002056 STU288_10175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin biosynthesis protein MoeA YP_007903134.1 2130930 D 1171376 CDS YP_007903135.1 482904575 2132165..2132914 1 NC_021151.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; molybdopterin biosynthesis protein MoeB 2132914 1171376002057 STU288_10180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin biosynthesis protein MoeB YP_007903135.1 2132165 D 1171376 CDS YP_007903136.1 482904576 2133192..2134091 1 NC_021151.1 COG1180 Pyruvate-formate lyase-activating enzyme; glycyl-radical enzyme activating protein family 2134091 1171376002058 STU288_10185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycyl-radical enzyme activating protein family YP_007903136.1 2133192 D 1171376 CDS YP_007903137.1 482904577 2134097..2136529 1 NC_021151.1 COG1882 Pyruvate-formate lyase; formate acetyltransferase 3 2136529 1171376002059 STU288_10190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate acetyltransferase 3 YP_007903137.1 2134097 D 1171376 CDS YP_007903138.1 482904578 complement(2136607..2137416) 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase SupH 2137416 1171376002060 STU288_10195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar phosphatase SupH YP_007903138.1 2136607 R 1171376 CDS YP_007903139.1 482904579 2137678..2138943 1 NC_021151.1 hypothetical protein 2138943 1171376002061 STU288_10200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903139.1 2137678 D 1171376 CDS YP_007903140.1 482904580 complement(2139223..2139438) 1 NC_021151.1 hypothetical protein 2139438 1171376002062 STU288_10205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903140.1 2139223 R 1171376 CDS YP_007903141.1 482904581 2139427..2139867 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; putative hydrolase 2139867 1171376002063 STU288_10210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative hydrolase YP_007903141.1 2139427 D 1171376 CDS YP_007903142.1 482904582 complement(2139896..2140792) 1 NC_021151.1 hypothetical protein 2140792 1171376002064 STU288_10215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903142.1 2139896 R 1171376 CDS YP_007903143.1 482904583 complement(2141248..2142840) 1 NC_021151.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 2142840 1171376002065 STU288_10220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007903143.1 2141248 R 1171376 CDS YP_007903144.1 482904584 2143059..2143979 1 NC_021151.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 2143979 1171376002066 STU288_10225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L,D-transpeptidase YP_007903144.1 2143059 D 1171376 CDS YP_007903145.1 482904585 complement(2144023..2145135) 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; hypothetical protein 2145135 1171376002067 STU288_10230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903145.1 2144023 R 1171376 CDS YP_007903146.1 482904586 complement(2145132..2145605) 1 NC_021151.1 COG1321 Mn-dependent transcriptional regulator; manganese transport regulator MntR 2145605 1171376002068 STU288_10235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 manganese transport regulator MntR YP_007903146.1 2145132 R 1171376 CDS YP_007903147.1 482904587 complement(2145848..2146018) 1 NC_021151.1 hypothetical protein 2146018 1171376002069 STU288_10240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903147.1 2145848 R 1171376 CDS YP_007903148.1 482904588 2146184..2147764 1 NC_021151.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 2147764 1171376002070 STU288_10245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903148.1 2146184 D 1171376 CDS YP_007903149.1 482904589 complement(2147827..2148342) 1 NC_021151.1 COG3637 Opacity protein and related surface antigens; outer membrane protein X 2148342 ompX 1171376002071 ompX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein X YP_007903149.1 2147827 R 1171376 CDS YP_007903150.1 482904590 2148696..2149583 1 NC_021151.1 COG5006 Predicted permease, DMT superfamily; threonine and homoserine efflux system 2149583 1171376002072 STU288_10255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine and homoserine efflux system YP_007903150.1 2148696 D 1171376 CDS YP_007903151.1 482904591 2149886..2150389 1 NC_021151.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); DNA starvation/stationary phase protection protein Dps 2150389 1171376002073 STU288_10260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA starvation/stationary phase protection protein Dps YP_007903151.1 2149886 D 1171376 CDS YP_007903152.1 482904592 2150866..2151612 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter periplasmic protein 2151612 glnH 1171376002074 glnH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamine ABC transporter periplasmic protein YP_007903152.1 2150866 D 1171376 CDS YP_007903153.1 482904593 2151756..2152415 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter permease protein 2152415 glnP 1171376002075 glnP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamine ABC transporter permease protein YP_007903153.1 2151756 D 1171376 CDS YP_007903154.1 482904594 2152412..2153134 1 NC_021151.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein 2153134 glnQ 1171376002076 glnQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamine ABC transporter ATP-binding protein YP_007903154.1 2152412 D 1171376 CDS YP_007903155.1 482904595 2153253..2155475 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel protein 2155475 1171376002077 STU288_10280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mechanosensitive channel protein YP_007903155.1 2153253 D 1171376 CDS YP_007903156.1 482904596 complement(2155472..2156398) 1 NC_021151.1 COG3129 Predicted SAM-dependent methyltransferase; 23S rRNA mA1618 methyltransferase 2156398 1171376002078 STU288_10285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA mA1618 methyltransferase YP_007903156.1 2155472 R 1171376 CDS YP_007903157.1 482904597 2156603..2156869 1 NC_021151.1 COG1734 DnaK suppressor protein; hypothetical protein 2156869 1171376002079 STU288_10290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903157.1 2156603 D 1171376 CDS YP_007903158.1 482904598 2157154..2157414 1 NC_021151.1 hypothetical protein 2157414 1171376002080 STU288_10295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903158.1 2157154 D 1171376 CDS YP_007903159.1 482904599 complement(2157570..2158544) 1 NC_021151.1 COG0547 Anthranilate phosphoribosyltransferase; glycosyl transferase family protein 2158544 1171376002081 STU288_10300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase family protein YP_007903159.1 2157570 R 1171376 CDS YP_007903160.1 482904600 complement(2158574..2160718) 1 NC_021151.1 COG1199 Rad3-related DNA helicases; ATP-dependent DNA helicase DinG 2160718 dinG 1171376002082 dinG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent DNA helicase DinG YP_007903160.1 2158574 R 1171376 CDS YP_007903161.1 482904601 complement(2160926..2162290) 1 NC_021151.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE 2162290 1171376002083 STU288_10310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase RhlE YP_007903161.1 2160926 R 1171376 CDS YP_007903162.1 482904602 2162520..2163194 1 NC_021151.1 COG1309 Transcriptional regulator; DNA-binding transcriptional regulator 2163194 1171376002084 STU288_10315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007903162.1 2162520 D 1171376 CDS YP_007903163.1 482904603 2163194..2164189 1 NC_021151.1 COG0845 Membrane-fusion protein; efflux pump membrane fusion protein 2164189 1171376002085 STU288_10320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 efflux pump membrane fusion protein YP_007903163.1 2163194 D 1171376 CDS YP_007903164.1 482904604 2164182..2165918 1 NC_021151.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter multidrug efflux pump, fused ATP-binding domains 2165918 1171376002086 STU288_10325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter multidrug efflux pump, fused ATP-binding domains YP_007903164.1 2164182 D 1171376 CDS YP_007903165.1 482904605 2165911..2167041 1 NC_021151.1 COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease YbhS 2167041 1171376002087 STU288_10330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transport permease YbhS YP_007903165.1 2165911 D 1171376 CDS YP_007903166.1 482904606 2167157..2168263 1 NC_021151.1 COG0842 ABC-type multidrug transport system, permease component; ABC transporter G family member 20 2168263 1171376002088 STU288_10335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter G family member 20 YP_007903166.1 2167157 D 1171376 CDS YP_007903167.1 482904607 complement(2168225..2168635) 1 NC_021151.1 putative inner membrane protein 2168635 1171376002089 STU288_10340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903167.1 2168225 R 1171376 CDS YP_007903168.1 482904608 2168768..2169526 1 NC_021151.1 COG3568 Metal-dependent hydrolase; hypothetical protein 2169526 1171376002090 STU288_10345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903168.1 2168768 D 1171376 CDS YP_007903169.1 482904609 2169523..2170764 1 NC_021151.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthase 2 2170764 1171376002091 STU288_10350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cardiolipin synthase 2 YP_007903169.1 2169523 D 1171376 CDS YP_007903170.1 482904610 2170764..2171726 1 NC_021151.1 COG0392 Predicted integral membrane protein; hypothetical protein 2171726 1171376002092 STU288_10355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903170.1 2170764 D 1171376 CDS YP_007903171.1 482904611 complement(2171729..2172289) 1 NC_021151.1 inner membrane protein 2172289 1171376002093 STU288_10360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007903171.1 2171729 R 1171376 CDS YP_007903172.1 482904612 complement(2172297..2172896) 1 NC_021151.1 putative inner membrane protein 2172896 1171376002094 STU288_10365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903172.1 2172297 R 1171376 CDS YP_007903173.1 482904613 complement(2172929..2173636) 1 NC_021151.1 COG0670 Integral membrane protein, interacts with FtsH; putative integral membrane protein 2173636 1171376002095 STU288_10370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative integral membrane protein YP_007903173.1 2172929 R 1171376 CDS YP_007903174.1 482904614 complement(2173783..2174487) 1 NC_021151.1 COG0670 Integral membrane protein, interacts with FtsH; Glutamate [NMDA] receptor-associated protein 1 NMDA receptor glutamate-binding subunit 2174487 1171376002096 STU288_10375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glutamate [NMDA] receptor-associated protein 1 NMDA receptor glutamate-binding subunit YP_007903174.1 2173783 R 1171376 CDS YP_007903175.1 482904615 complement(2174535..2174987) 1 NC_021151.1 COG0314 Molybdopterin converting factor, large subunit; molybdopterin guanine dinucleotide biosynthesis protein MoaE 2174987 moaE 1171376002097 moaE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_007903175.1 2174535 R 1171376 CDS YP_007903176.1 482904616 complement(2174989..2175234) 1 NC_021151.1 COG1977 Molybdopterin converting factor, small subunit; molybdopterin synthase small subunit 2175234 moaD 1171376002098 moaD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin synthase small subunit YP_007903176.1 2174989 R 1171376 CDS YP_007903177.1 482904617 complement(2175227..2175712) 1 NC_021151.1 COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 2175712 moaC 1171376002099 moaC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdenum cofactor biosynthesis protein MoaC YP_007903177.1 2175227 R 1171376 CDS YP_007903178.1 482904618 complement(2175715..2176227) 1 NC_021151.1 COG0521 Molybdopterin biosynthesis enzymes; molybdopterin biosynthesis protein B 2176227 1171376002100 STU288_10395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin biosynthesis protein B YP_007903178.1 2175715 R 1171376 CDS YP_007903179.1 482904619 complement(2176249..2177238) 1 NC_021151.1 COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 2177238 moaA 1171376002101 moaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdenum cofactor biosynthesis protein A YP_007903179.1 2176249 R 1171376 CDS YP_007903180.1 482904620 2177635..2178543 1 NC_021151.1 COG0391 Uncharacterized conserved protein; protein YbhK 2178543 1171376002102 STU288_10405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein YbhK YP_007903180.1 2177635 D 1171376 CDS YP_007903181.1 482904621 complement(2178635..2180932) 1 NC_021151.1 COG4886 Leucine-rich repeat (LRR) protein; E3 ubiquitin-protein ligase SlrP 2180932 1171376002103 STU288_10410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 E3 ubiquitin-protein ligase SlrP YP_007903181.1 2178635 R 1171376 CDS YP_007903182.1 482904622 complement(2181422..2183443) 1 NC_021151.1 COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B 2183443 1171376002104 STU288_10415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excinuclease ABC subunit B YP_007903182.1 2181422 R 1171376 CDS YP_007903183.1 482904623 2183855..2183965 1 NC_021151.1 hypothetical protein 2183965 1171376002105 STU288_10420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903183.1 2183855 D 1171376 CDS YP_007903184.1 482904624 complement(2184093..2184779) 1 NC_021151.1 COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 2184779 bioD 1171376002106 bioD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dithiobiotin synthetase YP_007903184.1 2184093 R 1171376 CDS YP_007903185.1 482904625 complement(2184772..2185527) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; biotin biosynthesis protein BioC 2185527 1171376002107 STU288_10430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biotin biosynthesis protein BioC YP_007903185.1 2184772 R 1171376 CDS YP_007903186.1 482904626 complement(2185511..2186668) 1 NC_021151.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 2186668 1171376002108 STU288_10435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 8-amino-7-oxononanoate synthase YP_007903186.1 2185511 R 1171376 CDS YP_007903187.1 482904627 complement(2186665..2187705) 1 NC_021151.1 COG0502 Biotin synthase and related enzymes; biotin synthase 2187705 1171376002109 STU288_10440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biotin synthase YP_007903187.1 2186665 R 1171376 CDS YP_007903188.1 482904628 2187792..2189081 1 NC_021151.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine--8-amino-7-oxononanoate transaminase 2189081 1171376002110 STU288_10445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_007903188.1 2187792 D 1171376 CDS YP_007903189.1 482904629 2189139..2189615 1 NC_021151.1 COG1881 Phospholipid-binding protein; kinase inhibitor protein 2189615 1171376002111 STU288_10450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 kinase inhibitor protein YP_007903189.1 2189139 D 1171376 CDS YP_007903190.1 482904630 complement(2189700..2191220) 1 NC_021151.1 COG2986 Histidine ammonia-lyase; histidine ammonia-lyase 2191220 1171376002112 STU288_10455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine ammonia-lyase YP_007903190.1 2189700 R 1171376 CDS YP_007903193.1 482904633 complement(2193103..2193828) 1 NC_021151.1 COG2188 Transcriptional regulators; histidine utilization repressor 2193828 1171376002114 STU288_10470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine utilization repressor YP_007903193.1 2193103 R 1171376 CDS YP_007903194.1 482904634 complement(2193873..2194814) 1 NC_021151.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; formimidoylglutamase 2194814 1171376002115 STU288_10475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formimidoylglutamase YP_007903194.1 2193873 R 1171376 CDS YP_007903195.1 482904635 complement(2194811..2196034) 1 NC_021151.1 COG1228 Imidazolonepropionase and related amidohydrolases; imidazolonepropionase 2196034 1171376002116 STU288_10480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 imidazolonepropionase YP_007903195.1 2194811 R 1171376 CDS YP_007903196.1 482904636 2196272..2197555 1 NC_021151.1 COG4677 Pectin methylesterase; acyl-CoA thioesterase 2197555 1171376002117 STU288_10485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA thioesterase YP_007903196.1 2196272 D 1171376 CDS YP_007903197.1 482904637 complement(2197699..2198694) 1 NC_021151.1 COG2706 3-carboxymuconate cyclase; 6-phosphogluconolactonase 2198694 1171376002118 STU288_10490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phosphogluconolactonase YP_007903197.1 2197699 R 1171376 CDS YP_007903198.1 482904638 2198858..2199676 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; pyridoxal phosphate (PLP) phosphatase 2199676 1171376002119 STU288_10495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxal phosphate (PLP) phosphatase YP_007903198.1 2198858 D 1171376 CDS YP_007903199.1 482904639 complement(2199677..2200735) 1 NC_021151.1 COG4148 ABC-type molybdate transport system, ATPase component; molybdate transporter ATP-binding protein 2200735 modC 1171376002120 modC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdate transporter ATP-binding protein YP_007903199.1 2199677 R 1171376 CDS YP_007903200.1 482904640 complement(2200738..2201427) 1 NC_021151.1 COG4149 ABC-type molybdate transport system, permease component; molybdate ABC transporter permease protein 2201427 modB 1171376002121 modB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdate ABC transporter permease protein YP_007903200.1 2200738 R 1171376 CDS YP_007903201.1 482904641 complement(2201427..2202200) 1 NC_021151.1 COG0725 ABC-type molybdate transport system, periplasmic component; molybdate transporter periplasmic protein 2202200 modA 1171376002122 modA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdate transporter periplasmic protein YP_007903201.1 2201427 R 1171376 CDS YP_007903202.1 482904642 complement(2202367..2202516) 1 NC_021151.1 hypothetical protein 2202516 1171376002123 STU288_10515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903202.1 2202367 R 1171376 CDS YP_007903203.1 482904643 2202645..2203433 1 NC_021151.1 COG2005 N-terminal domain of molybdenum-binding protein; DNA-binding transcriptional regulator ModE 2203433 1171376002124 STU288_10520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator ModE YP_007903203.1 2202645 D 1171376 CDS YP_007903204.1 482904644 2203501..2204976 1 NC_021151.1 COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; molybdenum transport ATP-binding protein ModF 2204976 1171376002125 STU288_10525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdenum transport ATP-binding protein ModF YP_007903204.1 2203501 D 1171376 CDS YP_007903205.1 482904645 2205147..2206055 1 NC_021151.1 COG4714 Uncharacterized membrane-anchored protein conserved in bacteria; putative inner membrane protein 2206055 1171376002126 STU288_10530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903205.1 2205147 D 1171376 CDS YP_007903206.1 482904646 2206278..2207294 1 NC_021151.1 COG1087 UDP-glucose 4-epimerase; UDP-galactose-4-epimerase 2207294 1171376002127 STU288_10535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-galactose-4-epimerase YP_007903206.1 2206278 D 1171376 CDS YP_007903207.1 482904647 2207305..2208351 1 NC_021151.1 COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase 2208351 1171376002128 STU288_10540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactose-1-phosphate uridylyltransferase YP_007903207.1 2207305 D 1171376 CDS YP_007903208.1 482904648 2208354..2209502 1 NC_021151.1 COG0153 Galactokinase; galactokinase 2209502 1171376002129 STU288_10545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactokinase YP_007903208.1 2208354 D 1171376 CDS YP_007903209.1 482904649 2209496..2210536 1 NC_021151.1 COG2017 Galactose mutarotase and related enzymes; galactose-1-epimerase 2210536 galM 1171376002130 galM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactose-1-epimerase YP_007903209.1 2209496 D 1171376 CDS YP_007903210.1 482904650 2210760..2211512 1 NC_021151.1 COG0588 Phosphoglycerate mutase 1; phosphoglyceromutase 2211512 gpmA 1171376002131 gpmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglyceromutase YP_007903210.1 2210760 D 1171376 CDS YP_007903211.1 482904651 complement(2211603..2212379) 1 NC_021151.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; ABC transporter ATP-binding protein 2212379 1171376002132 STU288_10560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007903211.1 2211603 R 1171376 CDS YP_007903212.1 482904652 complement(2212379..2213458) 1 NC_021151.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; putative ABC transport protein 2213458 1171376002133 STU288_10565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ABC transport protein YP_007903212.1 2212379 R 1171376 CDS YP_007903213.1 482904653 complement(2213838..2214536) 1 NC_021151.1 COG1767 Triphosphoribosyl-dephospho-CoA synthetase; hypothetical protein 2214536 1171376002134 STU288_10570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903213.1 2213838 R 1171376 CDS YP_007903214.1 482904654 complement(2214655..2215956) 1 NC_021151.1 COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase subunit beta 2215956 1171376002135 STU288_10575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxaloacetate decarboxylase subunit beta YP_007903214.1 2214655 R 1171376 CDS YP_007903217.1 482904657 2217702..2217812 1 NC_021151.1 hypothetical protein 2217812 1171376002137 STU288_10590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903217.1 2217702 D 1171376 CDS YP_007903218.1 482904658 complement(2217759..2218004) 1 NC_021151.1 COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 2218004 1171376002138 STU288_10595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxaloacetate decarboxylase subunit gamma YP_007903218.1 2217759 R 1171376 CDS YP_007903219.1 482904659 complement(2218054..2219322) 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; anion transporter 2219322 1171376002139 STU288_10600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anion transporter YP_007903219.1 2218054 R 1171376 CDS YP_007903220.1 482904660 2219581..2220528 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2220528 1171376002140 STU288_10605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903220.1 2219581 D 1171376 CDS YP_007903221.1 482904661 complement(2220529..2221419) 1 NC_021151.1 COG0583 Transcriptional regulator; putative HTH-type transcriptional regulator ywbI 2221419 1171376002141 STU288_10610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator ywbI YP_007903221.1 2220529 R 1171376 CDS YP_007903222.1 482904662 2221549..2222394 1 NC_021151.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase 2222394 1171376002142 STU288_10615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate hydratase YP_007903222.1 2221549 D 1171376 CDS YP_007903223.1 482904663 2222409..2222954 1 NC_021151.1 COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; hydro-lyase, tartrate/fumarate family, beta subunit 2222954 1171376002143 STU288_10620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydro-lyase, tartrate/fumarate family, beta subunit YP_007903223.1 2222409 D 1171376 CDS YP_007903224.1 482904664 complement(2223048..2224100) 1 NC_021151.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 2224100 1171376002144 STU288_10625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospho-2-dehydro-3-deoxyheptonate aldolase YP_007903224.1 2223048 R 1171376 CDS YP_007903225.1 482904665 2224420..2224806 1 NC_021151.1 hypothetical protein 2224806 1171376002145 STU288_10630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903225.1 2224420 D 1171376 CDS YP_007903226.1 482904666 2224917..2225855 1 NC_021151.1 COG1230 Co/Zn/Cd efflux system component; zinc transporter ZitB 2225855 1171376002146 STU288_10635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc transporter ZitB YP_007903226.1 2224917 D 1171376 CDS YP_007903227.1 482904667 complement(2225852..2226571) 1 NC_021151.1 COG3201 Nicotinamide mononucleotide transporter; nicotinamide riboside transporter PnuC 2226571 1171376002147 STU288_10640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nicotinamide riboside transporter PnuC YP_007903227.1 2225852 R 1171376 CDS YP_007903228.1 482904668 complement(2226596..2227639) 1 NC_021151.1 COG0379 Quinolinate synthase; quinolinate synthetase 2227639 1171376002148 STU288_10645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinolinate synthetase YP_007903228.1 2226596 R 1171376 CDS YP_007903229.1 482904669 complement(2229104..2229892) 1 NC_021151.1 COG1729 Uncharacterized protein conserved in bacteria; tol-pal system protein YbgF 2229892 1171376002154 STU288_10650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tol-pal system protein YbgF YP_007903229.1 2229104 R 1171376 CDS YP_007903230.1 482904670 complement(2229902..2230426) 1 NC_021151.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated outer membrane lipoprotein 2230426 1171376002155 STU288_10655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidoglycan-associated outer membrane lipoprotein YP_007903230.1 2229902 R 1171376 CDS YP_007903231.1 482904671 complement(2230461..2231753) 1 NC_021151.1 COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB 2231753 tolB 1171376002156 tolB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translocation protein TolB YP_007903231.1 2230461 R 1171376 CDS YP_007903232.1 482904672 complement(2231877..2233100) 1 NC_021151.1 COG3064 Membrane protein involved in colicin uptake; cell envelope integrity inner membrane protein TolA 2233100 tolA 1171376002157 tolA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell envelope integrity inner membrane protein TolA YP_007903232.1 2231877 R 1171376 CDS YP_007903233.1 482904673 complement(2233165..2233593) 1 NC_021151.1 COG0848 Biopolymer transport protein; colicin uptake protein TolR 2233593 1171376002158 STU288_10670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colicin uptake protein TolR YP_007903233.1 2233165 R 1171376 CDS YP_007903234.1 482904674 complement(2233597..2234289) 1 NC_021151.1 COG0811 Biopolymer transport proteins; colicin uptake protein TolQ 2234289 1171376002159 STU288_10675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 colicin uptake protein TolQ YP_007903234.1 2233597 R 1171376 CDS YP_007903235.1 482904675 complement(2234286..2234690) 1 NC_021151.1 COG0824 Predicted thioesterase; acyl-CoA thioesterase YbgC 2234690 1171376002160 STU288_10680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA thioesterase YbgC YP_007903235.1 2234286 R 1171376 CDS YP_007903236.1 482904676 complement(2234919..2235200) 1 NC_021151.1 COG3790 Predicted membrane protein; hypothetical protein 2235200 1171376002161 STU288_10685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903236.1 2234919 R 1171376 CDS YP_007903237.1 482904677 complement(2235197..2235337) 1 NC_021151.1 hypothetical protein 2235337 1171376002162 STU288_10690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903237.1 2235197 R 1171376 CDS YP_007903238.1 482904678 complement(2235337..2235450) 1 NC_021151.1 COG4890 Predicted outer membrane lipoprotein; hypothetical protein 2235450 1171376002163 STU288_10695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903238.1 2235337 R 1171376 CDS YP_007903239.1 482904679 complement(2235465..2236604) 1 NC_021151.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit 2 2236604 1171376002164 STU288_10700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome d ubiquinol oxidase subunit 2 YP_007903239.1 2235465 R 1171376 CDS YP_007903240.1 482904680 complement(2236620..2238188) 1 NC_021151.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d terminal oxidase subunit 1 2238188 1171376002165 STU288_10705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome d terminal oxidase subunit 1 YP_007903240.1 2236620 R 1171376 CDS YP_007903241.1 482904681 2238315..2238395 1 NC_021151.1 hypothetical protein 2238395 1171376002166 STU288_10710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903241.1 2238315 D 1171376 CDS YP_007903242.1 482904682 complement(2239771..2240640) 1 NC_021151.1 COG0074 Succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 2240640 1171376002167 STU288_10715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinyl-CoA synthetase subunit alpha YP_007903242.1 2239771 R 1171376 CDS YP_007903243.1 482904683 complement(2240640..2241806) 1 NC_021151.1 COG0045 Succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta 2241806 sucC 1171376002168 sucC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinyl-CoA synthetase subunit beta YP_007903243.1 2240640 R 1171376 CDS YP_007903244.1 482904684 complement(2241948..2243156) 1 NC_021151.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide succinyltransferase 2243156 1171376002169 STU288_10725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrolipoamide succinyltransferase YP_007903244.1 2241948 R 1171376 CDS YP_007903245.1 482904685 complement(2243171..2245972) 1 NC_021151.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; 2-oxoglutarate dehydrogenase E1 component 2245972 sucA 1171376002170 sucA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-oxoglutarate dehydrogenase E1 component YP_007903245.1 2243171 R 1171376 CDS YP_007903246.1 482904686 complement(2246496..2247212) 1 NC_021151.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; succinate dehydrogenase iron-sulfur subunit 2247212 sdhB 1171376002171 sdhB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate dehydrogenase iron-sulfur subunit YP_007903246.1 2246496 R 1171376 CDS YP_007903247.1 482904687 complement(2247229..2248995) 1 NC_021151.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit 2248995 sdhA 1171376002172 sdhA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate dehydrogenase flavoprotein subunit YP_007903247.1 2247229 R 1171376 CDS YP_007903248.1 482904688 complement(2248995..2249342) 1 NC_021151.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase cytochrome b556 small membrane subunit 2249342 sdhD 1171376002173 sdhD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate dehydrogenase cytochrome b556 small membrane subunit YP_007903248.1 2248995 R 1171376 CDS YP_007903249.1 482904689 complement(2249336..2249725) 1 NC_021151.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 2249725 sdhC 1171376002174 sdhC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate dehydrogenase cytochrome b556 large membrane subunit YP_007903249.1 2249336 R 1171376 CDS YP_007903250.1 482904690 2250480..2251763 1 NC_021151.1 COG0372 Citrate synthase; type II citrate synthase 2251763 gltA 1171376002175 gltA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type II citrate synthase YP_007903250.1 2250480 D 1171376 CDS YP_007903251.1 482904691 2251900..2252946 1 NC_021151.1 COG3180 Putative ammonia monooxygenase; aidB regulatorAbrB 2252946 1171376002176 STU288_10760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aidB regulatorAbrB YP_007903251.1 2251900 D 1171376 CDS YP_007903252.1 482904692 complement(2253001..2253792) 1 NC_021151.1 COG0266 Formamidopyrimidine-DNA glycosylase; endonuclease VIII 2253792 1171376002177 STU288_10765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease VIII YP_007903252.1 2253001 R 1171376 CDS YP_007903253.1 482904693 complement(2254046..2255995) 1 NC_021151.1 COG5610 Predicted hydrolase (HAD superfamily); Haloacid dehalogenase-like hydrolase 2255995 1171376002178 STU288_10770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Haloacid dehalogenase-like hydrolase YP_007903253.1 2254046 R 1171376 CDS YP_007903254.1 482904694 complement(2255999..2256832) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyltransferase 2256832 1171376002179 STU288_10775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycosyltransferase YP_007903254.1 2255999 R 1171376 CDS YP_007903255.1 482904695 complement(2257025..2258803) 1 NC_021151.1 COG1216 Predicted glycosyltransferases; glycosyltransferase, cell wall biogenesis 2258803 1171376002180 STU288_10780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyltransferase, cell wall biogenesis YP_007903255.1 2257025 R 1171376 CDS YP_007903256.1 482904696 complement(2258897..2259607) 1 NC_021151.1 COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Spermidine/putrescine import ATP-binding protein potA 2259607 1171376002181 STU288_10785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Spermidine/putrescine import ATP-binding protein potA YP_007903256.1 2258897 R 1171376 CDS YP_007903257.1 482904697 complement(2259611..2260381) 1 NC_021151.1 COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen export system permease protein rfbA 2260381 1171376002182 STU288_10790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen export system permease protein rfbA YP_007903257.1 2259611 R 1171376 CDS YP_007903258.1 482904698 complement(2260510..2261643) 1 NC_021151.1 COG0438 Glycosyltransferase; Amylovoran biosynthesis glycosyltransferase amsK 2261643 1171376002183 STU288_10795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Amylovoran biosynthesis glycosyltransferase amsK YP_007903258.1 2260510 R 1171376 CDS YP_007903259.1 482904699 complement(2261656..2262549) 1 NC_021151.1 COG1216 Predicted glycosyltransferases; putative glycosyl transferase 2262549 1171376002184 STU288_10800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycosyl transferase YP_007903259.1 2261656 R 1171376 CDS YP_007903260.1 482904700 complement(2262549..2263700) 1 NC_021151.1 COG0562 UDP-galactopyranose mutase; UDP-galactopyranose mutase 2263700 1171376002185 STU288_10805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-galactopyranose mutase YP_007903260.1 2262549 R 1171376 CDS YP_007903261.1 482904701 complement(2263986..2264726) 1 NC_021151.1 transport protein 2264726 1171376002186 STU288_10810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transport protein YP_007903261.1 2263986 R 1171376 CDS YP_007903262.1 482904702 complement(2264728..2264949) 1 NC_021151.1 hypothetical protein 2264949 1171376002187 STU288_10815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903262.1 2264728 R 1171376 CDS YP_007903263.1 482904703 complement(2265523..2266089) 1 NC_021151.1 COG0582 Integrase; hypothetical protein 2266089 1171376002188 STU288_10820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903263.1 2265523 R 1171376 CDS YP_007903264.1 482904704 2266384..2266485 1 NC_021151.1 hypothetical protein 2266485 1171376002189 STU288_10825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903264.1 2266384 D 1171376 CDS YP_007903265.1 482904705 complement(2266604..2267338) 1 NC_021151.1 COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; LamB/YcsF family protein 2267338 1171376002190 STU288_10830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LamB/YcsF family protein YP_007903265.1 2266604 R 1171376 CDS YP_007903266.1 482904706 complement(2267328..2268260) 1 NC_021151.1 COG1984 Allophanate hydrolase subunit 2; hypothetical protein 2268260 1171376002191 STU288_10835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903266.1 2267328 R 1171376 CDS YP_007903267.1 482904707 complement(2268254..2268910) 1 NC_021151.1 COG2049 Allophanate hydrolase subunit 1; hypothetical protein 2268910 1171376002192 STU288_10840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903267.1 2268254 R 1171376 CDS YP_007903268.1 482904708 complement(2268926..2269669) 1 NC_021151.1 COG0327 Uncharacterized conserved protein; metal-binding protein 2269669 1171376002193 STU288_10845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metal-binding protein YP_007903268.1 2268926 R 1171376 CDS YP_007903269.1 482904709 2269998..2271479 1 NC_021151.1 COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease D 2271479 1171376002194 STU288_10850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptide/tripeptide permease D YP_007903269.1 2269998 D 1171376 CDS YP_007903270.1 482904710 complement(2271518..2272939) 1 NC_021151.1 COG0415 Deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 2272939 1171376002195 STU288_10855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxyribodipyrimidine photolyase YP_007903270.1 2271518 R 1171376 CDS YP_007903271.1 482904711 complement(2273050..2273256) 1 NC_021151.1 hypothetical protein 2273256 1171376002196 STU288_10860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903271.1 2273050 R 1171376 CDS YP_007903272.1 482904712 2273593..2273682 1 NC_021151.1 K+-transporting ATPase, F subunit 2273682 1171376002197 STU288_10865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 K+-transporting ATPase, F subunit YP_007903272.1 2273593 D 1171376 CDS YP_007903273.1 482904713 2273682..2275361 1 NC_021151.1 COG2060 K+-transporting ATPase, A chain; potassium-transporting ATPase subunit A 2275361 1171376002198 STU288_10870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium-transporting ATPase subunit A YP_007903273.1 2273682 D 1171376 CDS YP_007903274.1 482904714 2275382..2277430 1 NC_021151.1 COG2216 High-affinity K+ transport system, ATPase chain B; potassium-transporting ATPase subunit B 2277430 1171376002199 STU288_10875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium-transporting ATPase subunit B YP_007903274.1 2275382 D 1171376 CDS YP_007903275.1 482904715 2277439..2278023 1 NC_021151.1 COG2156 K+-transporting ATPase, c chain; potassium-transporting ATPase subunit C 2278023 1171376002200 STU288_10880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium-transporting ATPase subunit C YP_007903275.1 2277439 D 1171376 CDS YP_007903276.1 482904716 2278020..2280704 1 NC_021151.1 COG2205 Osmosensitive K+ channel histidine kinase; sensor protein KdpD 2280704 1171376002201 STU288_10885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein KdpD YP_007903276.1 2278020 D 1171376 CDS YP_007903277.1 482904717 2280701..2281378 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator KdpE 2281378 1171376002202 STU288_10890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator KdpE YP_007903277.1 2280701 D 1171376 CDS YP_007903278.1 482904718 complement(2281629..2281742) 1 NC_021151.1 hypothetical protein 2281742 1171376002203 STU288_10895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903278.1 2281629 R 1171376 CDS YP_007903279.1 482904719 2282140..2284338 1 NC_021151.1 COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 2284338 1171376002204 STU288_10900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ornithine decarboxylase YP_007903279.1 2282140 D 1171376 CDS YP_007903280.1 482904720 2284335..2285654 1 NC_021151.1 COG0531 Amino acid transporters; putrescine transporter 2285654 potE 1171376002205 potE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine transporter YP_007903280.1 2284335 D 1171376 CDS YP_007903281.1 482904721 2285719..2286204 1 NC_021151.1 COG3467 Predicted flavin-nucleotide-binding protein; putative cytoplasmic protein 2286204 1171376002206 STU288_10910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903281.1 2285719 D 1171376 CDS YP_007903282.1 482904722 complement(2286319..2287959) 1 NC_021151.1 COG0033 Phosphoglucomutase; phosphoglucomutase 2287959 1171376002207 STU288_10915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglucomutase YP_007903282.1 2286319 R 1171376 CDS YP_007903283.1 482904723 complement(2287984..2288526) 1 NC_021151.1 COG3057 Negative regulator of replication initiationR; replication initiation regulator SeqA 2288526 1171376002208 STU288_10920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication initiation regulator SeqA YP_007903283.1 2287984 R 1171376 CDS YP_007903284.1 482904724 2288711..2289481 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); acyl-CoA esterase 2289481 1171376002209 STU288_10925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA esterase YP_007903284.1 2288711 D 1171376 CDS YP_007903285.1 482904725 2289615..2289908 1 NC_021151.1 LexA regulated protein 2289908 1171376002210 STU288_10930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LexA regulated protein YP_007903285.1 2289615 D 1171376 CDS YP_007903286.1 482904726 2290059..2290589 1 NC_021151.1 COG0716 Flavodoxins; flavodoxin FldA 2290589 1171376002211 STU288_10935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flavodoxin FldA YP_007903286.1 2290059 D 1171376 CDS YP_007903287.1 482904727 2290871..2291323 1 NC_021151.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator 2291323 fur 1171376002212 fur Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferric uptake regulator YP_007903287.1 2290871 D 1171376 CDS YP_007903288.1 482904728 2291438..2292364 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2292364 1171376002213 STU288_10945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903288.1 2291438 D 1171376 CDS YP_007903289.1 482904729 2292462..2293865 1 NC_021151.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; tricarballylate dehydrogenase 2293865 1171376002214 STU288_10950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tricarballylate dehydrogenase YP_007903289.1 2292462 D 1171376 CDS YP_007903290.1 482904730 2293852..2294991 1 NC_021151.1 COG0247 Fe-S oxidoreductase; tricarballylate utilization protein B 2294991 1171376002215 STU288_10955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tricarballylate utilization protein B YP_007903290.1 2293852 D 1171376 CDS YP_007903291.1 482904731 2295042..2296346 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; citrate-proton symporter 2296346 1171376002216 STU288_10960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate-proton symporter YP_007903291.1 2295042 D 1171376 CDS YP_007903292.1 482904732 complement(2296395..2296727) 1 NC_021151.1 lipoprotein 2296727 1171376002217 STU288_10965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903292.1 2296395 R 1171376 CDS YP_007903293.1 482904733 complement(2296777..2298183) 1 NC_021151.1 chitoporin 2298183 chiP 1171376002218 chiP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chitoporin YP_007903293.1 2296777 R 1171376 CDS YP_007903294.1 482904734 complement(2298629..2300296) 1 NC_021151.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutaminyl-tRNA ligase 2300296 1171376002219 STU288_10975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaminyl-tRNA ligase YP_007903294.1 2298629 R 1171376 CDS YP_007903295.1 482904735 complement(2300507..2302459) 1 NC_021151.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system N-acetyl glucosamine specific transporter subunits IIABC 2302459 1171376002220 STU288_10980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system N-acetyl glucosamine specific transporter subunits IIABC YP_007903295.1 2300507 R 1171376 CDS YP_007903296.1 482904736 2302786..2303586 1 NC_021151.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate deaminase 2303586 nagB 1171376002221 nagB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucosamine-6-phosphate deaminase YP_007903296.1 2302786 D 1171376 CDS YP_007903297.1 482904737 2303646..2304800 1 NC_021151.1 COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 2304800 nagA 1171376002222 nagA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylglucosamine-6-phosphate deacetylase YP_007903297.1 2303646 D 1171376 CDS YP_007903298.1 482904738 2304805..2306025 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional dual regulator NagC 2306025 1171376002223 STU288_10995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional dual regulator NagC YP_007903298.1 2304805 D 1171376 CDS YP_007903299.1 482904739 2306072..2306824 1 NC_021151.1 COG0647 Predicted sugar phosphatases of the HAD superfamily; UMP phosphatase 2306824 1171376002224 STU288_11000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UMP phosphatase YP_007903299.1 2306072 D 1171376 CDS YP_007903300.1 482904740 2307114..2308778 1 NC_021151.1 COG0367 Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase B 2308778 asnB 1171376002225 asnB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 asparagine synthetase B YP_007903300.1 2307114 D 1171376 CDS YP_007903301.1 482904741 2309845..2310420 1 NC_021151.1 hypothetical protein 2310420 1171376002233 STU288_11010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903301.1 2309845 D 1171376 CDS YP_007903302.1 482904742 complement(2310487..2311662) 1 NC_021151.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 2311662 ubiF 1171376002234 ubiF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_007903302.1 2310487 R 1171376 CDS YP_007903303.1 482904743 2311806..2313230 1 NC_021151.1 COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 2313230 1171376002235 STU288_11020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 (dimethylallyl)adenosine tRNA methylthiotransferase YP_007903303.1 2311806 D 1171376 CDS YP_007903304.1 482904744 2313435..2314481 1 NC_021151.1 COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH-like protein 2314481 1171376002236 STU288_11025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PhoH-like protein YP_007903304.1 2313435 D 1171376 CDS YP_007903305.1 482904745 2314478..2314951 1 NC_021151.1 COG0319 Predicted metal-dependent hydrolase; metal-binding heat shock protein 2314951 1171376002237 STU288_11030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metal-binding heat shock protein YP_007903305.1 2314478 D 1171376 CDS YP_007903306.1 482904746 2315109..2315987 1 NC_021151.1 COG4535 Putative Mg2+ and Co2+ transporter CorC; magnesium/cobalt efflux protein CorC 2315987 1171376002238 STU288_11035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 magnesium/cobalt efflux protein CorC YP_007903306.1 2315109 D 1171376 CDS YP_007903307.1 482904747 2316007..2317545 1 NC_021151.1 COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2317545 lnt 1171376002239 lnt Salmonella enterica subsp. enterica serovar Typhimurium str. U288 apolipoprotein N-acyltransferase YP_007903307.1 2316007 D 1171376 CDS YP_007903308.1 482904748 2317900..2318808 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamate and aspartate transporter subunit 2318808 1171376002240 STU288_11045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate and aspartate transporter subunit YP_007903308.1 2317900 D 1171376 CDS YP_007903309.1 482904749 2318968..2319708 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease GltJ 2319708 1171376002241 STU288_11050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate/aspartate ABC transporter permease GltJ YP_007903309.1 2318968 D 1171376 CDS YP_007903310.1 482904750 2319708..2320382 1 NC_021151.1 COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate transport system permease GltK 2320382 1171376002242 STU288_11055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate/aspartate transport system permease GltK YP_007903310.1 2319708 D 1171376 CDS YP_007903311.1 482904751 2320382..2321107 1 NC_021151.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate transport ATP-binding protein GltL 2321107 1171376002243 STU288_11060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate/aspartate transport ATP-binding protein GltL YP_007903311.1 2320382 D 1171376 CDS YP_007903312.1 482904752 2321224..2322159 1 NC_021151.1 COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 1 2322159 rihA 1171376002244 rihA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleoside hydrolase 1 YP_007903312.1 2321224 D 1171376 CDS YP_007903313.1 482904753 2322191..2323429 1 NC_021151.1 hypothetical protein 2323429 1171376002245 STU288_11070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903313.1 2322191 D 1171376 CDS YP_007903314.1 482904754 2323505..2325184 1 NC_021151.1 COG0443 Molecular chaperone; chaperone heat shock protein 2325184 1171376002246 STU288_11075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone heat shock protein YP_007903314.1 2323505 D 1171376 CDS YP_007903315.1 482904755 complement(2325206..2326678) 1 NC_021151.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; putative molecular chaperone 2326678 1171376002247 STU288_11080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative molecular chaperone YP_007903315.1 2325206 R 1171376 CDS YP_007903316.1 482904756 complement(2326675..2327370) 1 NC_021151.1 hypothetical protein 2327370 1171376002248 STU288_11085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903316.1 2326675 R 1171376 CDS YP_007903317.1 482904757 complement(2327382..2328815) 1 NC_021151.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; hypothetical protein 2328815 1171376002249 STU288_11090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903317.1 2327382 R 1171376 CDS YP_007903318.1 482904758 complement(2328812..2329519) 1 NC_021151.1 putative cytoplasmic protein 2329519 1171376002250 STU288_11095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903318.1 2328812 R 1171376 CDS YP_007903319.1 482904759 2329644..2330639 1 NC_021151.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 2330639 1171376002251 STU288_11100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903319.1 2329644 D 1171376 CDS YP_007903320.1 482904760 complement(2330678..2331151) 1 NC_021151.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein 2331151 1171376002252 STU288_11105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903320.1 2330678 R 1171376 CDS YP_007903321.1 482904761 complement(2331244..2333172) 1 NC_021151.1 COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; sigma-54 dependent transcriptional regulator 2333172 1171376002253 STU288_11110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sigma-54 dependent transcriptional regulator YP_007903321.1 2331244 R 1171376 CDS YP_007903322.1 482904762 complement(2333240..2334193) 1 NC_021151.1 2-keto-3-deoxygluconate permease 2334193 1171376002254 STU288_11115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-keto-3-deoxygluconate permease YP_007903322.1 2333240 R 1171376 CDS YP_007903323.1 482904763 complement(2334243..2335415) 1 NC_021151.1 COG2721 Altronate dehydratase; UxaA family hydrolase 2335415 1171376002255 STU288_11120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UxaA family hydrolase YP_007903323.1 2334243 R 1171376 CDS YP_007903324.1 482904764 complement(2335432..2335722) 1 NC_021151.1 COG2721 Altronate dehydratase; putative hydrolase 2335722 1171376002256 STU288_11125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative hydrolase YP_007903324.1 2335432 R 1171376 CDS YP_007903325.1 482904765 2336010..2338592 1 NC_021151.1 COG0495 Leucyl-tRNA synthetase; leucyl-tRNA ligase 2338592 leuS 1171376002257 leuS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucyl-tRNA ligase YP_007903325.1 2336010 D 1171376 CDS YP_007903326.1 482904766 2338607..2339197 1 NC_021151.1 COG2980 Rare lipoprotein B; LPS-assembly lipoprotein RlpB 2339197 1171376002258 STU288_11135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LPS-assembly lipoprotein RlpB YP_007903326.1 2338607 D 1171376 CDS YP_007903327.1 482904767 2339197..2340228 1 NC_021151.1 COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2340228 holA 1171376002259 holA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit delta YP_007903327.1 2339197 D 1171376 CDS YP_007903328.1 482904768 2340230..2340871 1 NC_021151.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase; nicotinic acid mononucleotide adenylyltransferase 2340871 nadD 1171376002260 nadD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nicotinic acid mononucleotide adenylyltransferase YP_007903328.1 2340230 D 1171376 CDS YP_007903329.1 482904769 complement(2340846..2341940) 1 NC_021151.1 COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; threonine-phosphate decarboxylase 2341940 1171376002261 STU288_11150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine-phosphate decarboxylase YP_007903329.1 2340846 R 1171376 CDS YP_007903330.1 482904770 2342037..2342645 1 NC_021151.1 COG0406 Fructose-2,6-bisphosphatase; alpha-ribazole phosphatase 2342645 1171376002262 STU288_11155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-ribazole phosphatase YP_007903330.1 2342037 D 1171376 CDS YP_007903331.1 482904771 2342645..2342785 1 NC_021151.1 hypothetical protein 2342785 1171376002263 STU288_11160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903331.1 2342645 D 1171376 CDS YP_007903332.1 482904772 2342974..2343291 1 NC_021151.1 COG0799 Uncharacterized homolog of plant Iojap protein; ribosome-associated protein 2343291 1171376002264 STU288_11165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome-associated protein YP_007903332.1 2342974 D 1171376 CDS YP_007903333.1 482904773 2343295..2343762 1 NC_021151.1 COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase 2343762 1171376002265 STU288_11170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rRNA large subunit methyltransferase YP_007903333.1 2343295 D 1171376 CDS YP_007903334.1 482904774 2343793..2345694 1 NC_021151.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 2345694 1171376002266 STU288_11175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-binding protein 2 YP_007903334.1 2343793 D 1171376 CDS YP_007903335.1 482904775 2345697..2346809 1 NC_021151.1 COG0772 Bacterial cell division membrane protein; cell wall shape-determining protein 2346809 1171376002267 STU288_11180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell wall shape-determining protein YP_007903335.1 2345697 D 1171376 CDS YP_007903336.1 482904776 2346820..2347965 1 NC_021151.1 COG0797 Lipoproteins; rare lipoprotein A 2347965 1171376002268 STU288_11185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rare lipoprotein A YP_007903336.1 2346820 D 1171376 CDS YP_007903337.1 482904777 2348105..2349316 1 NC_021151.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction A 2349316 1171376002269 STU288_11190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine carboxypeptidase fraction A YP_007903337.1 2348105 D 1171376 CDS YP_007903338.1 482904778 2349425..2349688 1 NC_021151.1 COG2921 Uncharacterized conserved protein; hypothetical protein 2349688 1171376002270 STU288_11195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903338.1 2349425 D 1171376 CDS YP_007903339.1 482904779 2349788..2350429 1 NC_021151.1 COG0321 Lipoate-protein ligase B; lipoate-protein ligase B 2350429 1171376002271 STU288_11200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoate-protein ligase B YP_007903339.1 2349788 D 1171376 CDS YP_007903340.1 482904780 2350731..2351684 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 2351684 1171376002272 STU288_11205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007903340.1 2350731 D 1171376 CDS YP_007903341.1 482904781 2351890..2352855 1 NC_021151.1 COG0320 Lipoate synthase; lipoyl synthase 2352855 1171376002273 STU288_11210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoyl synthase YP_007903341.1 2351890 D 1171376 CDS YP_007903342.1 482904782 complement(2352941..2353144) 1 NC_021151.1 COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein E 2353144 tatE 1171376002274 tatE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 twin arginine translocase protein E YP_007903342.1 2352941 R 1171376 CDS YP_007903343.1 482904783 complement(2353273..2354061) 1 NC_021151.1 COG0388 Predicted amidohydrolase; hydrolase 2354061 1171376002275 STU288_11220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007903343.1 2353273 R 1171376 CDS YP_007903344.1 482904784 2354152..2354535 1 NC_021151.1 COG0239 Integral membrane protein possibly involved in chromosome condensation; chromosome condensation membrane protein 2354535 1171376002276 STU288_11225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chromosome condensation membrane protein YP_007903344.1 2354152 D 1171376 CDS YP_007903345.1 482904785 complement(2354593..2354802) 1 NC_021151.1 COG1278 Cold shock proteins; cold shock protein CspE 2354802 cspE 1171376002277 cspE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cold shock protein CspE YP_007903345.1 2354593 R 1171376 CDS YP_007903346.1 482904786 complement(2354990..2355550) 1 NC_021151.1 phospholipid:lipid A palmitoyltransferase 2355550 pagP 1171376002278 pagP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospholipid:lipid A palmitoyltransferase YP_007903346.1 2354990 R 1171376 CDS YP_007903347.1 482904787 2355941..2357326 1 NC_021151.1 COG3069 C4-dicarboxylate transporter; C4-dicarboxylate transporter DcuC 2357326 dcuC 1171376002279 dcuC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 C4-dicarboxylate transporter DcuC YP_007903347.1 2355941 D 1171376 CDS YP_007903348.1 482904788 complement(2357380..2358060) 1 NC_021151.1 COG4565 Response regulator of citrate/malate metabolism; two-component response regulator DpiA 2358060 dpiA 1171376002280 dpiA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two-component response regulator DpiA YP_007903348.1 2357380 R 1171376 CDS YP_007903349.1 482904789 complement(2358029..2359690) 1 NC_021151.1 COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor histidine kinase DpiB 2359690 dpiB 1171376002281 dpiB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor histidine kinase DpiB YP_007903349.1 2358029 R 1171376 CDS YP_007903350.1 482904790 2360075..2361151 1 NC_021151.1 COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 2361151 1171376002282 STU288_11255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 [citrate [pro-3S]-lyase] ligase YP_007903350.1 2360075 D 1171376 CDS YP_007903351.1 482904791 2361148..2361444 1 NC_021151.1 COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma 2361444 1171376002283 STU288_11260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit gamma YP_007903351.1 2361148 D 1171376 CDS YP_007903352.1 482904792 2361441..2362349 1 NC_021151.1 COG2301 Citrate lyase beta subunit; citrate lyase subunit beta 2362349 1171376002284 STU288_11265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit beta YP_007903352.1 2361441 D 1171376 CDS YP_007903353.1 482904793 2362359..2363888 1 NC_021151.1 COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 2363888 1171376002285 STU288_11270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate lyase subunit alpha YP_007903353.1 2362359 D 1171376 CDS YP_007903354.1 482904794 2363892..2364443 1 NC_021151.1 COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 2364443 citX 1171376002286 citX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_007903354.1 2363892 D 1171376 CDS YP_007903355.1 482904795 2364415..2365311 1 NC_021151.1 COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase 2365311 citG 1171376002287 citG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 triphosphoribosyl-dephospho-CoA synthase YP_007903355.1 2364415 D 1171376 CDS YP_007903356.1 482904796 2365349..2366812 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; citrate:succinate antiporter 2366812 1171376002288 STU288_11285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 citrate:succinate antiporter YP_007903356.1 2365349 D 1171376 CDS YP_007903357.1 482904797 2366922..2367728 1 NC_021151.1 COG3719 Ribonuclease I; ribonuclease I 2367728 1171376002289 STU288_11290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease I YP_007903357.1 2366922 D 1171376 CDS YP_007903358.1 482904798 2367963..2368373 1 NC_021151.1 COG0782 Transcription elongation factor; nucleoside diphosphate kinase regulator 2368373 1171376002290 STU288_11295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside diphosphate kinase regulator YP_007903358.1 2367963 D 1171376 CDS YP_007903359.1 482904799 complement(2368456..2369694) 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc-dependent alcohol dehydrogenase 2369694 1171376002291 STU288_11300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc-dependent alcohol dehydrogenase YP_007903359.1 2368456 R 1171376 CDS YP_007903360.1 482904800 2369917..2370345 1 NC_021151.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspG 2370345 1171376002292 STU288_11305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress protein UspG YP_007903360.1 2369917 D 1171376 CDS YP_007903361.1 482904801 complement(2370413..2371180) 1 NC_021151.1 COG3302 DMSO reductase anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 2371180 1171376002293 STU288_11310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin-containing oxidoreductase membrane anchor subunit YP_007903361.1 2370413 R 1171376 CDS YP_007903362.1 482904802 complement(2371180..2371737) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; molybdopterin-containing oxidoreductase iron-sulfur subunit 2371737 1171376002294 STU288_11315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin-containing oxidoreductase iron-sulfur subunit YP_007903362.1 2371180 R 1171376 CDS YP_007903363.1 482904803 complement(2371734..2374013) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative oxidoreductase protein 2374013 1171376002295 STU288_11320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative oxidoreductase protein YP_007903363.1 2371734 R 1171376 CDS YP_007903364.1 482904804 complement(2374006..2374566) 1 NC_021151.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein 2374566 1171376002296 STU288_11325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903364.1 2374006 R 1171376 CDS YP_007903365.1 482904805 complement(2374898..2376463) 1 NC_021151.1 COG3634 Alkyl hydroperoxide reductase, large subunit; alkyl hydroperoxide reductase subunit F 2376463 1171376002297 STU288_11330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alkyl hydroperoxide reductase subunit F YP_007903365.1 2374898 R 1171376 CDS YP_007903366.1 482904806 complement(2376705..2377268) 1 NC_021151.1 COG0450 Peroxiredoxin; alkyl hydroperoxide reductase subunit C 2377268 1171376002298 STU288_11335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alkyl hydroperoxide reductase subunit C YP_007903366.1 2376705 R 1171376 CDS YP_007903367.1 482904807 2377709..2378455 1 NC_021151.1 COG1651 Protein-disulfide isomerase; disulfide isomerase/thiol-disulfide oxidase 2378455 dsbG 1171376002299 dsbG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 disulfide isomerase/thiol-disulfide oxidase YP_007903367.1 2377709 D 1171376 CDS YP_007903368.1 482904808 2378772..2379674 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2379674 1171376002300 STU288_11345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903368.1 2378772 D 1171376 CDS YP_007903369.1 482904809 2379840..2381075 1 NC_021151.1 COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 2381075 1171376002301 STU288_11350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase YP_007903369.1 2379840 D 1171376 CDS YP_007903370.1 482904810 2381036..2381665 1 NC_021151.1 COG1475 Predicted transcriptional regulators; hypothetical protein 2381665 1171376002302 STU288_11355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903370.1 2381036 D 1171376 CDS YP_007903371.1 482904811 complement(2381666..2382826) 1 NC_021151.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; methionine aminotransferase 2382826 1171376002303 STU288_11360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionine aminotransferase YP_007903371.1 2381666 R 1171376 CDS YP_007903372.1 482904812 2382953..2384041 1 NC_021151.1 COG0371 Glycerol dehydrogenase and related enzymes; oxidoreductase 2384041 1171376002304 STU288_11365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007903372.1 2382953 D 1171376 CDS YP_007903373.1 482904813 complement(2384077..2384274) 1 NC_021151.1 COG2879 Uncharacterized small protein; hypothetical protein 2384274 1171376002305 STU288_11370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903373.1 2384077 R 1171376 CDS YP_007903374.1 482904814 complement(2384338..2386443) 1 NC_021151.1 COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein A 2386443 1171376002306 STU288_11375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbon starvation protein A YP_007903374.1 2384338 R 1171376 CDS YP_007903375.1 482904815 complement(2386625..2387038) 1 NC_021151.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase 2387038 1171376002307 STU288_11380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioesterase YP_007903375.1 2386625 R 1171376 CDS YP_007903376.1 482904816 complement(2387041..2387796) 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxybenzoate-2,3-dehydrogenase 2387796 1171376002308 STU288_11385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_007903376.1 2387041 R 1171376 CDS YP_007903377.1 482904817 complement(2387796..2388653) 1 NC_021151.1 COG1535 Isochorismate hydrolase; isochorismatase 2388653 1171376002309 STU288_11390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isochorismatase YP_007903377.1 2387796 R 1171376 CDS YP_007903378.1 482904818 complement(2388667..2390277) 1 NC_021151.1 COG1021 Peptide arylation enzymes; enterobactin synthase subunit E 2390277 entE 1171376002310 entE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enterobactin synthase subunit E YP_007903378.1 2388667 R 1171376 CDS YP_007903379.1 482904819 complement(2390287..2391462) 1 NC_021151.1 COG1169 Isochorismate synthase; isochorismate synthase EntC 2391462 1171376002311 STU288_11400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isochorismate synthase EntC YP_007903379.1 2390287 R 1171376 CDS YP_007903380.1 482904820 2391771..2392727 1 NC_021151.1 COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component; iron-enterobactin transporter periplasmic binding protein 2392727 1171376002312 STU288_11405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-enterobactin transporter periplasmic binding protein YP_007903380.1 2391771 D 1171376 CDS YP_007903381.1 482904821 complement(2392790..2394034) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; enterobactin exporter EntS 2394034 1171376002313 STU288_11410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enterobactin exporter EntS YP_007903381.1 2392790 R 1171376 CDS YP_007903382.1 482904822 2394145..2395152 1 NC_021151.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-enterobactin transporter membrane protein 2395152 1171376002314 STU288_11415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-enterobactin transporter membrane protein YP_007903382.1 2394145 D 1171376 CDS YP_007903383.1 482904823 2395149..2396141 1 NC_021151.1 COG4779 ABC-type enterobactin transport system, permease component; iron-enterobactin transporter permease 2396141 1171376002315 STU288_11420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-enterobactin transporter permease YP_007903383.1 2395149 D 1171376 CDS YP_007903384.1 482904824 2396138..2396932 1 NC_021151.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-enterobactin transporter ATP-binding protein 2396932 1171376002316 STU288_11425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-enterobactin transporter ATP-binding protein YP_007903384.1 2396138 D 1171376 CDS YP_007903385.1 482904825 complement(2396985..2398121) 1 NC_021151.1 COG3765 Chain length determinant protein; LPS O-antigen length regulator 2398121 1171376002317 STU288_11430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LPS O-antigen length regulator YP_007903385.1 2396985 R 1171376 CDS YP_007903386.1 482904826 complement(2398371..2402255) 1 NC_021151.1 COG1020 Non-ribosomal peptide synthetase modules and related proteins; enterobactin synthase subunit F 2402255 entF 1171376002318 entF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enterobactin synthase subunit F YP_007903386.1 2398371 R 1171376 CDS YP_007903387.1 482904827 complement(2402252..2402470) 1 NC_021151.1 COG3251 Uncharacterized protein conserved in bacteria; hypothetical protein 2402470 1171376002319 STU288_11440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903387.1 2402252 R 1171376 CDS YP_007903388.1 482904828 complement(2402501..2403715) 1 NC_021151.1 COG2382 Enterochelin esterase and related enzymes; enterobactin/ferric enterobactin esterase 2403715 1171376002320 STU288_11445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enterobactin/ferric enterobactin esterase YP_007903388.1 2402501 R 1171376 CDS YP_007903389.1 482904829 2403904..2406159 1 NC_021151.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA 2406159 1171376002321 STU288_11450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane receptor FepA YP_007903389.1 2403904 D 1171376 CDS YP_007903390.1 482904830 2406205..2406909 1 NC_021151.1 COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 2406909 1171376002322 STU288_11455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_007903390.1 2406205 D 1171376 CDS YP_007903391.1 482904831 2406921..2408039 1 NC_021151.1 COG2170 Uncharacterized conserved protein; gamma-glutamyl:cysteine ligase 2408039 1171376002323 STU288_11460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-glutamyl:cysteine ligase YP_007903391.1 2406921 D 1171376 CDS YP_007903392.1 482904832 2408106..2408354 1 NC_021151.1 hypothetical protein 2408354 1171376002324 STU288_11465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903392.1 2408106 D 1171376 CDS YP_007903393.1 482904833 complement(2408360..2408701) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transposon Tn10 TetD protein 2408701 1171376002325 STU288_11470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposon Tn10 TetD protein YP_007903393.1 2408360 R 1171376 CDS YP_007903394.1 482904834 2408990..2409571 1 NC_021151.1 COG1309 Transcriptional regulator; HTH-type transcriptional repressor Bm3R1 2409571 1171376002326 STU288_11475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HTH-type transcriptional repressor Bm3R1 YP_007903394.1 2408990 D 1171376 CDS YP_007903395.1 482904835 2409571..2409939 1 NC_021151.1 COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 2409939 1171376002327 STU288_11480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903395.1 2409571 D 1171376 CDS YP_007903396.1 482904836 2410036..2410689 1 NC_021151.1 COG0778 Nitroreductase; dihydropteridine reductase 2410689 1171376002328 STU288_11485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropteridine reductase YP_007903396.1 2410036 D 1171376 CDS YP_007903397.1 482904837 2410889..2411338 1 NC_021151.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS system, mannose-specific II component 2411338 1171376002329 STU288_11490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative PTS system, mannose-specific II component YP_007903397.1 2410889 D 1171376 CDS YP_007903398.1 482904838 2411316..2411786 1 NC_021151.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, IIB component 2411786 1171376002330 STU288_11495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system, IIB component YP_007903398.1 2411316 D 1171376 CDS YP_007903399.1 482904839 2411801..2412544 1 NC_021151.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; sorbose-specific PTS system IIC protein 2412544 1171376002331 STU288_11500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sorbose-specific PTS system IIC protein YP_007903399.1 2411801 D 1171376 CDS YP_007903400.1 482904840 2412547..2413401 1 NC_021151.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 2413401 1171376002332 STU288_11505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannose-specific transporter subunit IID YP_007903400.1 2412547 D 1171376 CDS YP_007903401.1 482904841 2413416..2414477 1 NC_021151.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 2414477 1171376002333 STU288_11510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucosamine--fructose-6-phosphate aminotransferase YP_007903401.1 2413416 D 1171376 CDS YP_007903402.1 482904842 2414544..2415530 1 NC_021151.1 COG2222 Predicted phosphosugar isomerases; phospohtase isomerase-like protein 2415530 1171376002334 STU288_11515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospohtase isomerase-like protein YP_007903402.1 2414544 D 1171376 CDS YP_007903403.1 482904843 complement(2415658..2418387) 1 NC_021151.1 COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; NtrC Transcriptional regulator, ATPase domain protein 2418387 1171376002335 STU288_11520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NtrC Transcriptional regulator, ATPase domain protein YP_007903403.1 2415658 R 1171376 CDS YP_007903404.1 482904844 complement(2418554..2420524) 1 NC_021151.1 COG3240 Phospholipase/lecithinase/hemolysin; outer membrane esterase 2420524 1171376002336 STU288_11525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane esterase YP_007903404.1 2418554 R 1171376 CDS YP_007903405.1 482904845 2420835..2422082 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 2422082 1171376002337 STU288_11530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903405.1 2420835 D 1171376 CDS YP_007903406.1 482904846 complement(2422124..2423518) 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; phenylalanine transporter 2423518 1171376002338 STU288_11535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phenylalanine transporter YP_007903406.1 2422124 R 1171376 CDS YP_007903407.1 482904847 2423844..2425019 1 NC_021151.1 COG1076 DnaJ-domain-containing proteins 1; DNA repair ATPase 2425019 1171376002339 STU288_11540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA repair ATPase YP_007903407.1 2423844 D 1171376 CDS YP_007903408.1 482904848 complement(2425098..2425658) 1 NC_021151.1 COG3059 Predicted membrane protein; hypothetical protein 2425658 1171376002340 STU288_11545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903408.1 2425098 R 1171376 CDS YP_007903409.1 482904849 complement(2425671..2425907) 1 NC_021151.1 hypothetical protein 2425907 1171376002341 STU288_11550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903409.1 2425671 R 1171376 CDS YP_007903410.1 482904850 complement(2426064..2427389) 1 NC_021151.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulfide oxidoreductase 2427389 1171376002342 STU288_11555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridine nucleotide-disulfide oxidoreductase YP_007903410.1 2426064 R 1171376 CDS YP_007903411.1 482904851 2427605..2428459 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; Transcriptional regulator (AraC/XylS family) protein 2428459 1171376002343 STU288_11560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transcriptional regulator (AraC/XylS family) protein YP_007903411.1 2427605 D 1171376 CDS YP_007903412.1 482904852 complement(2428510..2428674) 1 NC_021151.1 COG3696 Putative silver efflux pump; cation efflux system protein CusA 2428674 1171376002344 STU288_11565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation efflux system protein CusA YP_007903412.1 2428510 R 1171376 CDS YP_007903413.1 482904853 2428798..2429127 1 NC_021151.1 COG0642 Signal transduction histidine kinase; Osmosensitive K+ channel histidine kinase KdpD 2429127 1171376002345 STU288_11570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Osmosensitive K+ channel histidine kinase KdpD YP_007903413.1 2428798 D 1171376 CDS YP_007903414.1 482904854 2429366..2429497 1 NC_021151.1 copE1 2429497 1171376002346 STU288_11575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 copE1 YP_007903414.1 2429366 D 1171376 CDS YP_007903415.1 482904855 2429995..2430357 1 NC_021151.1 COG2246 Predicted membrane protein; Bactoprenol-linked glucose translocase 2430357 1171376002348 STU288_11580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Bactoprenol-linked glucose translocase YP_007903415.1 2429995 D 1171376 CDS YP_007903416.1 482904856 2430354..2431280 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase 2431280 1171376002349 STU288_11585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bactoprenol glucosyl transferase YP_007903416.1 2430354 D 1171376 CDS YP_007903417.1 482904857 2431273..2432913 1 NC_021151.1 putative inner membrane protein 2432913 1171376002350 STU288_11590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903417.1 2431273 D 1171376 CDS YP_007903418.1 482904858 complement(2432970..2433128) 1 NC_021151.1 hypothetical protein 2433128 1171376002351 STU288_11595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903418.1 2432970 R 1171376 CDS YP_007903419.1 482904859 2433300..2433518 1 NC_021151.1 COG2963 Transposase and inactivated derivatives; transposase 2433518 1171376002352 STU288_11600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007903419.1 2433300 D 1171376 CDS YP_007903420.1 482904860 2433855..2434124 1 NC_021151.1 integrase 2434124 1171376002353 STU288_11605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase YP_007903420.1 2433855 D 1171376 CDS YP_007903421.1 482904861 2434415..2435011 1 NC_021151.1 fimbriae regulatory protein FimW 2435011 1171376002355 STU288_11610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbriae regulatory protein FimW YP_007903421.1 2434415 D 1171376 CDS YP_007903422.1 482904862 2435173..2435484 1 NC_021151.1 COG2200 FOG: EAL domain; Putative diguanylate cyclase/phosphodiesterase domain 0 2435484 1171376002356 STU288_11615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative diguanylate cyclase/phosphodiesterase domain 0 YP_007903422.1 2435173 D 1171376 CDS YP_007903423.1 482904863 2435503..2436225 1 NC_021151.1 COG1270 Cobalamin biosynthesis protein CobD/CbiB; fimbriae Y protein 2436225 1171376002357 STU288_11620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbriae Y protein YP_007903423.1 2435503 D 1171376 CDS YP_007903424.1 482904864 2436829..2437461 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator FimZ 2437461 1171376002358 STU288_11625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator FimZ YP_007903424.1 2436829 D 1171376 CDS YP_007903425.1 482904865 complement(2437507..2438025) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein SfmF 2438025 1171376002359 STU288_11630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial-like adhesin protein SfmF YP_007903425.1 2437507 R 1171376 CDS YP_007903426.1 482904866 complement(2438035..2439042) 1 NC_021151.1 fimbrial-like adhesin 2439042 fimH 1171376002360 fimH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial-like adhesin YP_007903426.1 2438035 R 1171376 CDS YP_007903427.1 482904867 complement(2439057..2441669) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD 2441669 1171376002361 STU288_11640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane usher protein FimD YP_007903427.1 2439057 R 1171376 CDS YP_007903428.1 482904868 complement(2441700..2442392) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein FimC 2442392 1171376002362 STU288_11645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein FimC YP_007903428.1 2441700 R 1171376 CDS YP_007903429.1 482904869 complement(2442436..2442969) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein FimI 2442969 1171376002363 STU288_11650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein FimI YP_007903429.1 2442436 R 1171376 CDS YP_007903430.1 482904870 complement(2443045..2443602) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; type-1 fimbrial protein subunit A 2443602 1171376002364 STU288_11655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type-1 fimbrial protein subunit A YP_007903430.1 2443045 R 1171376 CDS YP_007903431.1 482904871 2444149..2445015 1 NC_021151.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2445015 1171376002365 STU288_11660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_007903431.1 2444149 D 1171376 CDS YP_007903432.1 482904872 2445017..2445229 1 NC_021151.1 COG2501 Uncharacterized conserved protein; ribosome-associated protein 2445229 1171376002366 STU288_11665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome-associated protein YP_007903432.1 2445017 D 1171376 CDS YP_007903433.1 482904873 2445357..2445902 1 NC_021151.1 COG1988 Predicted membrane-bound metal-dependent hydrolases; membrane-bound metal-dependent hydrolase 2445902 1171376002367 STU288_11670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane-bound metal-dependent hydrolase YP_007903433.1 2445357 D 1171376 CDS YP_007903434.1 482904874 2445895..2446332 1 NC_021151.1 hypothetical protein 2446332 1171376002368 STU288_11675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903434.1 2445895 D 1171376 CDS YP_007903435.1 482904875 2446329..2447153 1 NC_021151.1 COG4727 Uncharacterized protein conserved in bacteria; exported outer membrane protein 2447153 1171376002369 STU288_11680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exported outer membrane protein YP_007903435.1 2446329 D 1171376 CDS YP_007903436.1 482904876 complement(2447197..2448582) 1 NC_021151.1 COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA ligase 2448582 cysS 1171376002370 cysS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteinyl-tRNA ligase YP_007903436.1 2447197 R 1171376 CDS YP_007903437.1 482904877 2448755..2449249 1 NC_021151.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B (rotamase B) 2449249 1171376002371 STU288_11690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-prolyl cis-trans isomerase B (rotamase B) YP_007903437.1 2448755 D 1171376 CDS YP_007903438.1 482904878 2449252..2449974 1 NC_021151.1 COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase 2449974 1171376002372 STU288_11695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-2,3-diacylglucosamine hydrolase YP_007903438.1 2449252 D 1171376 CDS YP_007903439.1 482904879 2450092..2450601 1 NC_021151.1 COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; N5-carboxyaminoimidazole ribonucleotide mutase 2450601 purE 1171376002373 purE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N5-carboxyaminoimidazole ribonucleotide mutase YP_007903439.1 2450092 D 1171376 CDS YP_007903440.1 482904880 2450598..2451665 1 NC_021151.1 COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); phosphoribosylaminoimidazole carboxylase ATPase subunit 2451665 1171376002374 STU288_11705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_007903440.1 2450598 D 1171376 CDS YP_007903441.1 482904881 complement(2451706..2452599) 1 NC_021151.1 COG0549 Carbamate kinase; carbamate kinase 2452599 1171376002375 STU288_11710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamate kinase YP_007903441.1 2451706 R 1171376 CDS YP_007903442.1 482904882 complement(2452603..2453412) 1 NC_021151.1 hypothetical protein 2453412 1171376002376 STU288_11715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903442.1 2452603 R 1171376 CDS YP_007903443.1 482904883 complement(2453424..2454683) 1 NC_021151.1 hypothetical protein 2454683 1171376002377 STU288_11720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903443.1 2453424 R 1171376 CDS YP_007903444.1 482904884 complement(2454693..2456357) 1 NC_021151.1 COG0074 Succinyl-CoA synthetase, alpha subunit; membrane protein FdrA 2456357 1171376002378 STU288_11725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane protein FdrA YP_007903444.1 2454693 R 1171376 CDS YP_007903445.1 482904885 2456688..2457737 1 NC_021151.1 COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase 2457737 1171376002379 STU288_11730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ureidoglycolate dehydrogenase YP_007903445.1 2456688 D 1171376 CDS YP_007903446.1 482904886 2457759..2458994 1 NC_021151.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; allantoate amidohydrolase 2458994 1171376002380 STU288_11735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 allantoate amidohydrolase YP_007903446.1 2457759 D 1171376 CDS YP_007903447.1 482904887 2459005..2459790 1 NC_021151.1 COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; hypothetical protein 2459790 1171376002381 STU288_11740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903447.1 2459005 D 1171376 CDS YP_007903448.1 482904888 complement(2459870..2461018) 1 NC_021151.1 COG1929 Glycerate kinase; glycerate kinase II 2461018 1171376002382 STU288_11745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerate kinase II YP_007903448.1 2459870 R 1171376 CDS YP_007903449.1 482904889 complement(2461041..2462339) 1 NC_021151.1 COG2233 Xanthine/uracil permeases; uracil/xanthine transporter 2462339 1171376002383 STU288_11750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uracil/xanthine transporter YP_007903449.1 2461041 R 1171376 CDS YP_007903450.1 482904890 complement(2462398..2463759) 1 NC_021151.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; allantoinase 2463759 1171376002384 STU288_11755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 allantoinase YP_007903450.1 2462398 R 1171376 CDS YP_007903451.1 482904891 complement(2463838..2465292) 1 NC_021151.1 COG1953 Cytosine/uracil/thiamine/allantoin permeases; allantoin permease 2465292 1171376002385 STU288_11760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 allantoin permease YP_007903451.1 2463838 R 1171376 CDS YP_007903452.1 482904892 complement(2465388..2466635) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative permease 2466635 1171376002386 STU288_11765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007903452.1 2465388 R 1171376 CDS YP_007903453.1 482904893 complement(2466701..2467579) 1 NC_021151.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase 2467579 1171376002387 STU288_11770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tartronate semialdehyde reductase YP_007903453.1 2466701 R 1171376 CDS YP_007903454.1 482904894 complement(2467680..2468456) 1 NC_021151.1 COG3622 Hydroxypyruvate isomerase; hydroxypyruvate isomerase 2468456 1171376002388 STU288_11775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxypyruvate isomerase YP_007903454.1 2467680 R 1171376 CDS YP_007903455.1 482904895 complement(2468469..2470250) 1 NC_021151.1 COG3960 Glyoxylate carboligase; glyoxylate carboligase 2470250 1171376002389 STU288_11780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glyoxylate carboligase YP_007903455.1 2468469 R 1171376 CDS YP_007903456.1 482904896 complement(2470335..2471153) 1 NC_021151.1 COG1414 Transcriptional regulator; DNA-binding transcriptional repressor AllR 2471153 1171376002390 STU288_11785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor AllR YP_007903456.1 2470335 R 1171376 CDS YP_007903457.1 482904897 complement(2471232..2471714) 1 NC_021151.1 COG3194 Ureidoglycolate hydrolase; ureidoglycolate hydrolase 2471714 1171376002391 STU288_11790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ureidoglycolate hydrolase YP_007903457.1 2471232 R 1171376 CDS YP_007903458.1 482904898 2471941..2472867 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator AllS 2472867 1171376002392 STU288_11795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator AllS YP_007903458.1 2471941 D 1171376 CDS YP_007903459.1 482904899 2472937..2474031 1 NC_021151.1 COG2603 Predicted ATPase; tRNA 2-selenouridine synthase 2474031 1171376002393 STU288_11800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA 2-selenouridine synthase YP_007903459.1 2472937 D 1171376 CDS YP_007903460.1 482904900 complement(2474070..2474729) 1 NC_021151.1 COG2011 ABC-type metal ion transport system, permease component; putative D-methionine transport system permease protein metI 2474729 1171376002394 STU288_11805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative D-methionine transport system permease protein metI YP_007903460.1 2474070 R 1171376 CDS YP_007903461.1 482904901 complement(2474722..2475738) 1 NC_021151.1 COG1135 ABC-type metal ion transport system, ATPase component; ABC transporter ATP-binding protein 2475738 1171376002395 STU288_11810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007903461.1 2474722 R 1171376 CDS YP_007903462.1 482904902 complement(2475775..2476605) 1 NC_021151.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; lipoprotein 2476605 1171376002396 STU288_11815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903462.1 2475775 R 1171376 CDS YP_007903463.1 482904903 complement(2476862..2477995) 1 NC_021151.1 COG3203 Outer membrane protein (porin); Outer membrane pore protein E Flags: Precursor 2477995 1171376002397 STU288_11820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Outer membrane pore protein E Flags: Precursor YP_007903463.1 2476862 R 1171376 CDS YP_007903464.1 482904904 complement(2478080..2478184) 1 NC_021151.1 hypothetical protein 2478184 1171376002398 STU288_11825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903464.1 2478080 R 1171376 CDS YP_007903465.1 482904905 complement(2478181..2480595) 1 NC_021151.1 COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; hypothetical protein 2480595 1171376002399 STU288_11830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903465.1 2478181 R 1171376 CDS YP_007903466.1 482904906 complement(2480592..2481278) 1 NC_021151.1 COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; ABC transporter ATP-binding protein YbbA 2481278 1171376002400 STU288_11835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YbbA YP_007903466.1 2480592 R 1171376 CDS YP_007903467.1 482904907 2481249..2481863 1 NC_021151.1 COG2755 Lysophospholipase L1 and related esterases; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 2481863 1171376002401 STU288_11840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YP_007903467.1 2481249 D 1171376 CDS YP_007903468.1 482904908 2482018..2482788 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 2482788 1171376002402 STU288_11845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007903468.1 2482018 D 1171376 CDS YP_007903469.1 482904909 2482848..2483702 1 NC_021151.1 COG3118 Thioredoxin domain-containing protein; thioredoxin domain-containing protein 2483702 1171376002403 STU288_11850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioredoxin domain-containing protein YP_007903469.1 2482848 D 1171376 CDS YP_007903470.1 482904910 complement(2483788..2484567) 1 NC_021151.1 COG0390 ABC-type uncharacterized transport system, permease component; metal resistance protein 2484567 1171376002404 STU288_11855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metal resistance protein YP_007903470.1 2483788 R 1171376 CDS YP_007903471.1 482904911 complement(2484554..2485231) 1 NC_021151.1 COG4619 ABC-type uncharacterized transport system, ATPase component; ABC transporter ATP-binding protein YbbL 2485231 1171376002405 STU288_11860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YbbL YP_007903471.1 2484554 R 1171376 CDS YP_007903472.1 482904912 2485378..2486295 1 NC_021151.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 2486295 1171376002406 STU288_11865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903472.1 2485378 D 1171376 CDS YP_007903473.1 482904913 2486292..2486744 1 NC_021151.1 COG1585 Membrane protein implicated in regulation of membrane protease activity; nodulation efficiency family protein 2486744 1171376002407 STU288_11870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nodulation efficiency family protein YP_007903473.1 2486292 D 1171376 CDS YP_007903474.1 482904914 complement(2486745..2487161) 1 NC_021151.1 COG0789 Predicted transcriptional regulators; DNA-binding transcriptional regulator CueR 2487161 1171376002408 STU288_11875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator CueR YP_007903474.1 2486745 R 1171376 CDS YP_007903475.1 482904915 2487271..2489772 1 NC_021151.1 COG2217 Cation transport ATPase; copper exporting ATPase 2489772 copA 1171376002409 copA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 copper exporting ATPase YP_007903475.1 2487271 D 1171376 CDS YP_007903476.1 482904916 2489926..2490753 1 NC_021151.1 COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein 2490753 1171376002410 STU288_11885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903476.1 2489926 D 1171376 CDS YP_007903477.1 482904917 2490839..2491633 1 NC_021151.1 COG3735 Uncharacterized protein conserved in bacteria; hypothetical protein 2491633 1171376002411 STU288_11890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903477.1 2490839 D 1171376 CDS YP_007903478.1 482904918 2491835..2492314 1 NC_021151.1 COG2606 Uncharacterized conserved protein; hypothetical protein 2492314 1171376002412 STU288_11895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903478.1 2491835 D 1171376 CDS YP_007903479.1 482904919 complement(2492431..2494083) 1 NC_021151.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2494083 ushA 1171376002413 ushA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_007903479.1 2492431 R 1171376 CDS YP_007903480.1 482904920 2494256..2495476 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; fosmidomycin resistance protein 2495476 1171376002414 STU288_11905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fosmidomycin resistance protein YP_007903480.1 2494256 D 1171376 CDS YP_007903481.1 482904921 complement(2495488..2495613) 1 NC_021151.1 hypothetical protein 2495613 1171376002415 STU288_11910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903481.1 2495488 R 1171376 CDS YP_007903482.1 482904922 2495691..2497367 1 NC_021151.1 COG4651 Kef-type K+ transport system, predicted NAD-binding component; cation:proton antiport protein 2497367 1171376002416 STU288_11915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation:proton antiport protein YP_007903482.1 2495691 D 1171376 CDS YP_007903483.1 482904923 complement(2497416..2498720) 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; inosine/guanosine kinase 2498720 1171376002417 STU288_11920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inosine/guanosine kinase YP_007903483.1 2497416 R 1171376 CDS YP_007903484.1 482904924 2498873..2499844 1 NC_021151.1 COG0657 Esterase/lipase; acetyl esterase 2499844 1171376002418 STU288_11925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl esterase YP_007903484.1 2498873 D 1171376 CDS YP_007903485.1 482904925 complement(2499841..2500803) 1 NC_021151.1 COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 2500803 hemH 1171376002419 hemH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrochelatase YP_007903485.1 2499841 R 1171376 CDS YP_007903486.1 482904926 complement(2501032..2501676) 1 NC_021151.1 COG0563 Adenylate kinase and related kinases; adenylate kinase 2501676 adk 1171376002420 adk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylate kinase YP_007903486.1 2501032 R 1171376 CDS YP_007903487.1 482904927 2501593..2501814 1 NC_021151.1 hypothetical protein 2501814 1171376002421 STU288_11940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903487.1 2501593 D 1171376 CDS YP_007903488.1 482904928 complement(2501917..2503791) 1 NC_021151.1 COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 2503791 1171376002422 STU288_11945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein 90 YP_007903488.1 2501917 R 1171376 CDS YP_007903489.1 482904929 complement(2503902..2504507) 1 NC_021151.1 COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 2504507 recR 1171376002423 recR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination protein RecR YP_007903489.1 2503902 R 1171376 CDS YP_007903490.1 482904930 complement(2504507..2504836) 1 NC_021151.1 COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 2504836 1171376002424 STU288_11955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903490.1 2504507 R 1171376 CDS YP_007903491.1 482904931 complement(2504882..2506810) 1 NC_021151.1 COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 2506810 1171376002425 STU288_11960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunits gamma and tau YP_007903491.1 2504882 R 1171376 CDS YP_007903492.1 482904932 complement(2506924..2507475) 1 NC_021151.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 2507475 1171376002426 STU288_11965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenine phosphoribosyltransferase YP_007903492.1 2506924 R 1171376 CDS YP_007903493.1 482904933 complement(2507628..2508005) 1 NC_021151.1 COG2832 Uncharacterized protein conserved in bacteria; hypothetical protein 2508005 1171376002427 STU288_11970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903493.1 2507628 R 1171376 CDS YP_007903494.1 482904934 2508074..2508601 1 NC_021151.1 COG3923 Primosomal replication protein N''; primosomal replication protein N'' 2508601 1171376002428 STU288_11975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 primosomal replication protein N'' YP_007903494.1 2508074 D 1171376 CDS YP_007903495.1 482904935 2508615..2508782 1 NC_021151.1 hypothetical protein 2508782 1171376002429 STU288_11980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903495.1 2508615 D 1171376 CDS YP_007903496.1 482904936 2508852..2509787 1 NC_021151.1 COG5464 Uncharacterized conserved protein; hypothetical protein 2509787 1171376002430 STU288_11985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903496.1 2508852 D 1171376 CDS YP_007903497.1 482904937 complement(2509829..2513191) 1 NC_021151.1 COG3264 Small-conductance mechanosensitive channel; hypothetical protein 2513191 1171376002431 STU288_11990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903497.1 2509829 R 1171376 CDS YP_007903498.1 482904938 complement(2513310..2513963) 1 NC_021151.1 COG1309 Transcriptional regulator; DNA-binding transcriptional repressor AcrR 2513963 1171376002432 STU288_11995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor AcrR YP_007903498.1 2513310 R 1171376 CDS YP_007903499.1 482904939 2514105..2515298 1 NC_021151.1 COG0845 Membrane-fusion protein; multidrug efflux system transporter AcrA 2515298 1171376002433 STU288_12000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system transporter AcrA YP_007903499.1 2514105 D 1171376 CDS YP_007903500.1 482904940 2515321..2518470 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrB 2518470 1171376002434 STU288_12005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein AcrB YP_007903500.1 2515321 D 1171376 CDS YP_007903501.1 482904941 2518966..2519340 1 NC_021151.1 Hha toxicity attenuator 2519340 1171376002435 STU288_12010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Hha toxicity attenuator YP_007903501.1 2518966 D 1171376 CDS YP_007903502.1 482904942 2519368..2519586 1 NC_021151.1 modulator of gene expression, with H-NS 2519586 1171376002436 STU288_12015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 modulator of gene expression, with H-NS YP_007903502.1 2519368 D 1171376 CDS YP_007903503.1 482904943 2519765..2520316 1 NC_021151.1 COG0110 Acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase 2520316 1171376002437 STU288_12020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose O-acetyltransferase YP_007903503.1 2519765 D 1171376 CDS YP_007903504.1 482904944 2520433..2520903 1 NC_021151.1 hypothetical protein 2520903 1171376002438 STU288_12025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903504.1 2520433 D 1171376 CDS YP_007903505.1 482904945 complement(2520959..2521099) 1 NC_021151.1 COG0257 Ribosomal protein L36; 50S ribosomal protein L36 2521099 rpmJ 1171376002439 rpmJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L36 YP_007903505.1 2520959 R 1171376 CDS YP_007903506.1 482904946 complement(2521105..2521365) 1 NC_021151.1 COG0254 Ribosomal protein L31; 50S ribosomal protein L31 type B 2521365 rpmE2 1171376002440 rpmE2 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L31 type B YP_007903506.1 2521105 R 1171376 CDS YP_007903507.1 482904947 2521590..2523140 1 NC_021151.1 COG4943 Predicted signal transduction protein containing sensor and EAL domains; EAL signaling domain protein 2523140 1171376002441 STU288_12040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 EAL signaling domain protein YP_007903507.1 2521590 D 1171376 CDS YP_007903508.1 482904948 2523371..2523760 1 NC_021151.1 COG3695 Predicted methylated DNA-protein cysteine methyltransferase; methylated-DNA methyltransferase 2523760 1171376002442 STU288_12045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylated-DNA methyltransferase YP_007903508.1 2523371 D 1171376 CDS YP_007903509.1 482904949 complement(2523793..2524362) 1 NC_021151.1 COG3126 Uncharacterized protein conserved in bacteria; lipoprotein 2524362 1171376002443 STU288_12050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903509.1 2523793 R 1171376 CDS YP_007903510.1 482904950 2524577..2525437 1 NC_021151.1 COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase II 2525437 1171376002444 STU288_12055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA thioesterase II YP_007903510.1 2524577 D 1171376 CDS YP_007903511.1 482904951 complement(2525537..2526823) 1 NC_021151.1 COG0004 Ammonia permease; ammonium transporter 2526823 1171376002445 STU288_12060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ammonium transporter YP_007903511.1 2525537 R 1171376 CDS YP_007903512.1 482904952 complement(2526855..2527193) 1 NC_021151.1 COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 2 2527193 1171376002446 STU288_12065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrogen regulatory protein P-II 2 YP_007903512.1 2526855 R 1171376 CDS YP_007903513.1 482904953 complement(2527406..2529187) 1 NC_021151.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein 2529187 1171376002447 STU288_12070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug ABC transporter ATP-binding protein YP_007903513.1 2527406 R 1171376 CDS YP_007903514.1 482904954 complement(2529180..2530952) 1 NC_021151.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein 2530952 1171376002448 STU288_12075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug ABC transporter ATP-binding protein YP_007903514.1 2529180 R 1171376 CDS YP_007903515.1 482904955 2531565..2532617 1 NC_021151.1 COG0031 Cysteine synthase; pyridoxal-5'-phosphate-dependent enzyme beta subunit 2532617 1171376002449 STU288_12090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyridoxal-5'-phosphate-dependent enzyme beta subunit YP_007903515.1 2531565 D 1171376 CDS YP_007903516.1 482904956 complement(2532667..2533485) 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; thiamin pyrimidine pyrophosphate hydrolase 2533485 1171376002450 STU288_12095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamin pyrimidine pyrophosphate hydrolase YP_007903516.1 2532667 R 1171376 CDS YP_007903517.1 482904957 2533586..2535286 1 NC_021151.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; Oligopeptide ABC oligopeptide-binding OppA 2535286 1171376002451 STU288_12100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Oligopeptide ABC oligopeptide-binding OppA YP_007903517.1 2533586 D 1171376 CDS YP_007903518.1 482904958 2535351..2536046 1 NC_021151.1 COG0603 Predicted PP-loop superfamily ATPase; queuosine biosynthesis protein QueC 2536046 1171376002452 STU288_12105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 queuosine biosynthesis protein QueC YP_007903518.1 2535351 D 1171376 CDS YP_007903519.1 482904959 complement(2536152..2536550) 1 NC_021151.1 COG0824 Predicted thioesterase; thioesterase superfamily protein 2536550 1171376002453 STU288_12110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioesterase superfamily protein YP_007903519.1 2536152 R 1171376 CDS YP_007903520.1 482904960 complement(2536654..2537028) 1 NC_021151.1 COG1555 DNA uptake protein and related DNA-binding proteins; competence protein ComEA 2537028 1171376002454 STU288_12115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 competence protein ComEA YP_007903520.1 2536654 R 1171376 CDS YP_007903521.1 482904961 complement(2537178..2539049) 1 NC_021151.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; periplasmic folding chaperone 2539049 1171376002455 STU288_12120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic folding chaperone YP_007903521.1 2537178 R 1171376 CDS YP_007903522.1 482904962 complement(2539340..2539612) 1 NC_021151.1 COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit beta 2539612 1171376002456 STU288_12125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator HU subunit beta YP_007903522.1 2539340 R 1171376 CDS YP_007903523.1 482904963 complement(2539821..2542175) 1 NC_021151.1 COG0466 ATP-dependent Lon protease, bacterial type; DNA-binding ATP-dependent protease La 2542175 1171376002457 STU288_12130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding ATP-dependent protease La YP_007903523.1 2539821 R 1171376 CDS YP_007903524.1 482904964 complement(2542361..2543632) 1 NC_021151.1 COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 2543632 clpX 1171376002458 clpX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent protease ATP-binding subunit ClpX YP_007903524.1 2542361 R 1171376 CDS YP_007903525.1 482904965 complement(2543884..2544507) 1 NC_021151.1 COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 2544507 1171376002459 STU288_12140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent Clp protease proteolytic subunit YP_007903525.1 2543884 R 1171376 CDS YP_007903526.1 482904966 complement(2544754..2546052) 1 NC_021151.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 2546052 tig 1171376002460 tig Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trigger factor YP_007903526.1 2544754 R 1171376 CDS YP_007903527.1 482904967 complement(2546399..2546716) 1 NC_021151.1 COG0271 Stress-induced morphogen (activity unknown); transcriptional regulator BolA 2546716 1171376002461 STU288_12150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator BolA YP_007903527.1 2546399 R 1171376 CDS YP_007903528.1 482904968 2547020..2547598 1 NC_021151.1 COG3056 Uncharacterized lipoprotein; hypothetical protein 2547598 1171376002462 STU288_12155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903528.1 2547020 D 1171376 CDS YP_007903529.1 482904969 2547642..2549117 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; muropeptide transporter 2549117 ampG 1171376002463 ampG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 muropeptide transporter YP_007903529.1 2547642 D 1171376 CDS YP_007903530.1 482904970 2549570..2550526 1 NC_021151.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome o ubiquinol oxidase subunit II 2550526 1171376002464 STU288_12165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome o ubiquinol oxidase subunit II YP_007903530.1 2549570 D 1171376 CDS YP_007903531.1 482904971 2550537..2552528 1 NC_021151.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome o ubiquinol oxidase subunit I 2552528 1171376002465 STU288_12170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome o ubiquinol oxidase subunit I YP_007903531.1 2550537 D 1171376 CDS YP_007903532.1 482904972 2552518..2553132 1 NC_021151.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome o ubiquinol oxidase subunit III 2553132 1171376002466 STU288_12175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome o ubiquinol oxidase subunit III YP_007903532.1 2552518 D 1171376 CDS YP_007903533.1 482904973 2553132..2553461 1 NC_021151.1 COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; cytochrome o ubiquinol oxidase subunit IV 2553461 1171376002467 STU288_12180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome o ubiquinol oxidase subunit IV YP_007903533.1 2553132 D 1171376 CDS YP_007903534.1 482904974 2553473..2554363 1 NC_021151.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); protoheme IX farnesyltransferase 2554363 1171376002468 STU288_12185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protoheme IX farnesyltransferase YP_007903534.1 2553473 D 1171376 CDS YP_007903535.1 482904975 complement(2554445..2555938) 1 NC_021151.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 2555938 1171376002469 STU288_12190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903535.1 2554445 R 1171376 CDS YP_007903536.1 482904976 complement(2555950..2557461) 1 NC_021151.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 2557461 1171376002470 STU288_12195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903536.1 2555950 R 1171376 CDS YP_007903537.1 482904977 2557998..2559362 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; inner membrane transport protein YajR 2559362 1171376002471 STU288_12200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transport protein YajR YP_007903537.1 2557998 D 1171376 CDS YP_007903538.1 482904978 complement(2559409..2559900) 1 NC_021151.1 COG1666 Uncharacterized protein conserved in bacteria; nucleotide-binding protein 2559900 1171376002472 STU288_12205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleotide-binding protein YP_007903538.1 2559409 R 1171376 CDS YP_007903539.1 482904979 2560026..2560937 1 NC_021151.1 COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase 2560937 1171376002473 STU288_12210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-dehydropantoate 2-reductase YP_007903539.1 2560026 D 1171376 CDS YP_007903540.1 482904980 2560900..2561490 1 NC_021151.1 COG0693 Putative intracellular protease/amidase; oxidative-stress-resistance chaperone 2561490 1171376002474 STU288_12215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidative-stress-resistance chaperone YP_007903540.1 2560900 D 1171376 CDS YP_007903541.1 482904981 complement(2561587..2562396) 1 NC_021151.1 COG0637 Predicted phosphatase/phosphohexomutase; phosphonoacetaldehyde hydrolase 2562396 1171376002475 STU288_12220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphonoacetaldehyde hydrolase YP_007903541.1 2561587 R 1171376 CDS YP_007903542.1 482904982 complement(2562406..2563509) 1 NC_021151.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; 2-aminoethylphosphonate--pyruvate transaminase 2563509 1171376002476 STU288_12225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-aminoethylphosphonate--pyruvate transaminase YP_007903542.1 2562406 R 1171376 CDS YP_007903543.1 482904983 2563649..2564368 1 NC_021151.1 COG2188 Transcriptional regulators; transcriptional regulator protein 2564368 1171376002477 STU288_12230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator protein YP_007903543.1 2563649 D 1171376 CDS YP_007903544.1 482904984 2564566..2565579 1 NC_021151.1 COG1840 ABC-type Fe3+ transport system, periplasmic component; 2-aminoethylphosphonate ABC transporter substrate-binding protein 2565579 1171376002478 STU288_12235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_007903544.1 2564566 D 1171376 CDS YP_007903545.1 482904985 2565585..2566694 1 NC_021151.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; 2-aminoethylphosphonate ABC transporter ATP-binding protein 2566694 1171376002479 STU288_12240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_007903545.1 2565585 D 1171376 CDS YP_007903546.1 482904986 2566697..2567557 1 NC_021151.1 COG0555 ABC-type sulfate transport system, permease component; 2-aminoethylphosphonate transport system permease PhnU 2567557 1171376002480 STU288_12245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-aminoethylphosphonate transport system permease PhnU YP_007903546.1 2566697 D 1171376 CDS YP_007903547.1 482904987 2567560..2568357 1 NC_021151.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; 2-aminoethylphosphonate ABC transporter permease 2568357 1171376002481 STU288_12250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-aminoethylphosphonate ABC transporter permease YP_007903547.1 2567560 D 1171376 CDS YP_007903548.1 482904988 complement(2568401..2569849) 1 NC_021151.1 COG0301 Thiamine biosynthesis ATP pyrophosphatase; tRNA s(4)U8 sulfurtransferase 2569849 1171376002482 STU288_12255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA s(4)U8 sulfurtransferase YP_007903548.1 2568401 R 1171376 CDS YP_007903549.1 482904989 2570059..2570301 1 NC_021151.1 COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 2570301 1171376002483 STU288_12260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exodeoxyribonuclease VII small subunit YP_007903549.1 2570059 D 1171376 CDS YP_007903550.1 482904990 2570302..2571201 1 NC_021151.1 COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 2571201 1171376002484 STU288_12265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 geranyltranstransferase YP_007903550.1 2570302 D 1171376 CDS YP_007903551.1 482904991 2571225..2573087 1 NC_021151.1 COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 2573087 1171376002485 STU288_12270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1-deoxy-D-xylulose-5-phosphate synthase YP_007903551.1 2571225 D 1171376 CDS YP_007903552.1 482904992 2573144..2574118 1 NC_021151.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative oxidoreductase 2574118 1171376002486 STU288_12275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative oxidoreductase YP_007903552.1 2573144 D 1171376 CDS YP_007903553.1 482904993 complement(2574222..2574737) 1 NC_021151.1 COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 2574737 1171376002487 STU288_12280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatidylglycerophosphatase A YP_007903553.1 2574222 R 1171376 CDS YP_007903554.1 482904994 complement(2574715..2575692) 1 NC_021151.1 COG0611 Thiamine monophosphate kinase; thiamine monophosphate kinase 2575692 1171376002488 STU288_12285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine monophosphate kinase YP_007903554.1 2574715 R 1171376 CDS YP_007903555.1 482904995 complement(2575771..2576190) 1 NC_021151.1 COG0781 Transcription termination factor; transcription antitermination protein NusB 2576190 nusB 1171376002489 nusB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription antitermination protein NusB YP_007903555.1 2575771 R 1171376 CDS YP_007903556.1 482904996 complement(2576211..2576681) 1 NC_021151.1 COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase 2576681 ribH 1171376002490 ribH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6,7-dimethyl-8-ribityllumazine synthase YP_007903556.1 2576211 R 1171376 CDS YP_007903557.1 482904997 complement(2576770..2577873) 1 NC_021151.1 COG0117 Pyrimidine deaminase; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 2577873 ribD 1171376002491 ribD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_007903557.1 2576770 R 1171376 CDS YP_007903558.1 482904998 complement(2577877..2578326) 1 NC_021151.1 COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR 2578326 nrdR 1171376002492 nrdR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator NrdR YP_007903558.1 2577877 R 1171376 CDS YP_007903559.1 482904999 2578478..2579017 1 NC_021151.1 hypothetical protein 2579017 1171376002493 STU288_12310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903559.1 2578478 D 1171376 CDS YP_007903560.1 482905000 2579317..2580180 1 NC_021151.1 COG3248 Nucleoside-binding outer membrane protein; nucleoside-specific channel-forming protein Tsx 2580180 1171376002494 STU288_12315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside-specific channel-forming protein Tsx YP_007903560.1 2579317 D 1171376 CDS YP_007903561.1 482905001 complement(2580264..2580371) 1 NC_021151.1 hypothetical protein 2580371 1171376002495 STU288_12320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903561.1 2580264 R 1171376 CDS YP_007903562.1 482905002 complement(2580809..2581156) 1 NC_021151.1 COG1403 Restriction endonuclease; hypothetical protein 2581156 1171376002496 STU288_12325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903562.1 2580809 R 1171376 CDS YP_007903563.1 482905003 complement(2581326..2582018) 1 NC_021151.1 COG2378 Predicted transcriptional regulator; putative HTH-type transcriptional regulator yobV 2582018 1171376002497 STU288_12330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator yobV YP_007903563.1 2581326 R 1171376 CDS YP_007903564.1 482905004 complement(2582044..2582409) 1 NC_021151.1 COG3324 Predicted enzyme related to lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2582409 1171376002498 STU288_12335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glyoxalase/bleomycin resistance protein/dioxygenase YP_007903564.1 2582044 R 1171376 CDS YP_007903565.1 482905005 complement(2582557..2583528) 1 NC_021151.1 COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 2583528 secF 1171376002499 secF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecF YP_007903565.1 2582557 R 1171376 CDS YP_007903566.1 482905006 complement(2583539..2585386) 1 NC_021151.1 COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 2585386 secD 1171376002500 secD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecD YP_007903566.1 2583539 R 1171376 CDS YP_007903567.1 482905007 complement(2585414..2585746) 1 NC_021151.1 COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 2585746 yajC 1171376002501 yajC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit YajC YP_007903567.1 2585414 R 1171376 CDS YP_007903568.1 482905008 complement(2585769..2586896) 1 NC_021151.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2586896 tgt 1171376002502 tgt Salmonella enterica subsp. enterica serovar Typhimurium str. U288 queuine tRNA-ribosyltransferase YP_007903568.1 2585769 R 1171376 CDS YP_007903569.1 482905009 complement(2587093..2588157) 1 NC_021151.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2588157 queA 1171376002503 queA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_007903569.1 2587093 R 1171376 CDS YP_007903570.1 482905010 2588251..2588832 1 NC_021151.1 COG3124 Uncharacterized protein conserved in bacteria; acyl carrier protein phosphodiesterase 2588832 1171376002504 STU288_12365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl carrier protein phosphodiesterase YP_007903570.1 2588251 D 1171376 CDS YP_007903571.1 482905011 2589042..2589644 1 NC_021151.1 COG0450 Peroxiredoxin; peroxidase 2589644 1171376002505 STU288_12370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peroxidase YP_007903571.1 2589042 D 1171376 CDS YP_007903572.1 482905012 complement(2589716..2591533) 1 NC_021151.1 COG0366 Glycosidases; maltodextrin glucosidase 2591533 1171376002506 STU288_12375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltodextrin glucosidase YP_007903572.1 2589716 R 1171376 CDS YP_007903573.1 482905013 complement(2591695..2593065) 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; proline-specific permease 2593065 proY 1171376002507 proY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 proline-specific permease YP_007903573.1 2591695 R 1171376 CDS YP_007903574.1 482905014 complement(2593140..2594459) 1 NC_021151.1 COG1114 Branched-chain amino acid permeases; branched-chain amino acid transport system 2 carrier protein BrnQ 2594459 1171376002508 STU288_12385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 branched-chain amino acid transport system 2 carrier protein BrnQ YP_007903574.1 2593140 R 1171376 CDS YP_007903575.1 482905015 complement(2594868..2596163) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; phosphate regulon sensor protein 2596163 phoR 1171376002509 phoR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate regulon sensor protein YP_007903575.1 2594868 R 1171376 CDS YP_007903576.1 482905016 complement(2596233..2596922) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator PhoB 2596922 1171376002510 STU288_12395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator PhoB YP_007903576.1 2596233 R 1171376 CDS YP_007903577.1 482905017 2596964..2597095 1 NC_021151.1 hypothetical protein 2597095 1171376002511 STU288_12400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903577.1 2596964 D 1171376 CDS YP_007903578.1 482905018 2597137..2598339 1 NC_021151.1 COG0420 DNA repair exonuclease; exonuclease subunit SbcD 2598339 1171376002512 STU288_12405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease subunit SbcD YP_007903578.1 2597137 D 1171376 CDS YP_007903579.1 482905019 2598336..2601476 1 NC_021151.1 COG0419 ATPase involved in DNA repair; exonuclease subunit SbcC 2601476 1171376002513 STU288_12410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease subunit SbcC YP_007903579.1 2598336 D 1171376 CDS YP_007903580.1 482905020 2601649..2602821 1 NC_021151.1 COG2814 Arabinose efflux permease; MFS transport protein AraJ 2602821 1171376002514 STU288_12415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MFS transport protein AraJ YP_007903580.1 2601649 D 1171376 CDS YP_007903581.1 482905021 complement(2602713..2602895) 1 NC_021151.1 hypothetical protein 2602895 1171376002515 STU288_12420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903581.1 2602713 R 1171376 CDS YP_007903582.1 482905022 complement(2602843..2603751) 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; fructokinase 2603751 1171376002516 STU288_12425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructokinase YP_007903582.1 2602843 R 1171376 CDS YP_007903583.1 482905023 2603877..2604788 1 NC_021151.1 COG2974 DNA recombination-dependent growth factor C; recombination associated protein 2604788 rdgC 1171376002517 rdgC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination associated protein YP_007903583.1 2603877 D 1171376 CDS YP_007903584.1 482905024 complement(2604826..2605110) 1 NC_021151.1 COG3123 Uncharacterized protein conserved in bacteria; hypothetical protein 2605110 1171376002518 STU288_12435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903584.1 2604826 R 1171376 CDS YP_007903585.1 482905025 complement(2605181..2605858) 1 NC_021151.1 hypothetical protein 2605858 1171376002519 STU288_12440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903585.1 2605181 R 1171376 CDS YP_007903586.1 482905026 complement(2606109..2606300) 1 NC_021151.1 hypothetical protein 2606300 1171376002520 STU288_12445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903586.1 2606109 R 1171376 CDS YP_007903587.1 482905027 complement(2606327..2606872) 1 NC_021151.1 COG0703 Shikimate kinase; shikimate kinase II 2606872 aroL 1171376002521 aroL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 shikimate kinase II YP_007903587.1 2606327 R 1171376 CDS YP_007903588.1 482905028 complement(2607057..2607512) 1 NC_021151.1 COG1671 Uncharacterized protein conserved in bacteria; hypothetical protein 2607512 1171376002522 STU288_12455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903588.1 2607057 R 1171376 CDS YP_007903589.1 482905029 2607652..2608461 1 NC_021151.1 COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2608461 1171376002523 STU288_12460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyrroline-5-carboxylate reductase YP_007903589.1 2607652 D 1171376 CDS YP_007903590.1 482905030 complement(2608476..2609588) 1 NC_021151.1 COG2199 FOG: GGDEF domain; diguanylate cyclase AdrA 2609588 adrA 1171376002524 adrA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diguanylate cyclase AdrA YP_007903590.1 2608476 R 1171376 CDS YP_007903591.1 482905031 complement(2609680..2610000) 1 NC_021151.1 hypothetical protein 2610000 1171376002525 STU288_12470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903591.1 2609680 R 1171376 CDS YP_007903592.1 482905032 complement(2610352..2610612) 1 NC_021151.1 anti-RssB factor 2610612 1171376002526 STU288_12475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-RssB factor YP_007903592.1 2610352 R 1171376 CDS YP_007903593.1 482905033 complement(2610909..2612120) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Drug efflux system protein MdtG 2612120 1171376002527 STU288_12480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Drug efflux system protein MdtG YP_007903593.1 2610909 R 1171376 CDS YP_007903594.1 482905034 complement(2612289..2613002) 1 NC_021151.1 COG3921 Uncharacterized protein conserved in bacteria; hypothetical protein 2613002 1171376002528 STU288_12485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903594.1 2612289 R 1171376 CDS YP_007903595.1 482905035 2613080..2614174 1 NC_021151.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 2614174 ddl 1171376002529 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-alanine synthetase A YP_007903595.1 2613080 D 1171376 CDS YP_007903596.1 482905036 complement(2614200..2614415) 1 NC_021151.1 hypothetical protein 2614415 1171376002530 STU288_12495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903596.1 2614200 R 1171376 CDS YP_007903597.1 482905037 2614683..2614991 1 NC_021151.1 Inner membrane protein yaiY 2614991 1171376002531 STU288_12500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yaiY YP_007903597.1 2614683 D 1171376 CDS YP_007903598.1 482905038 complement(2615029..2616123) 1 NC_021151.1 COG1201 Lhr-like helicases; lipoprotein 2616123 1171376002532 STU288_12505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903598.1 2615029 R 1171376 CDS YP_007903599.1 482905039 complement(2616138..2617256) 1 NC_021151.1 COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components; microcin B17 transporter 2617256 1171376002533 STU288_12510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 microcin B17 transporter YP_007903599.1 2616138 R 1171376 CDS YP_007903600.1 482905040 2617705..2618862 1 NC_021151.1 COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactam binding protein AmpH 2618862 1171376002534 STU288_12515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 beta-lactam binding protein AmpH YP_007903600.1 2617705 D 1171376 CDS YP_007903601.1 482905041 complement(2618907..2619530) 1 NC_021151.1 DNA-binding transcriptional regulator 2619530 1171376002535 STU288_12520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YP_007903601.1 2618907 R 1171376 CDS YP_007903602.1 482905042 complement(2619616..2622552) 1 NC_021151.1 COG3468 Type V secretory pathway, adhesin AidA; flagellar protein 2622552 1171376002536 STU288_12525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellar protein YP_007903602.1 2619616 R 1171376 CDS YP_007903603.1 482905043 2623065..2624039 1 NC_021151.1 COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 2624039 1171376002537 STU288_12530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 delta-aminolevulinic acid dehydratase YP_007903603.1 2623065 D 1171376 CDS YP_007903604.1 482905044 complement(2624143..2626029) 1 NC_021151.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; propionyl-CoA synthetase 2626029 prpE 1171376002538 prpE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propionyl-CoA synthetase YP_007903604.1 2624143 R 1171376 CDS YP_007903605.1 482905045 complement(2626070..2627521) 1 NC_021151.1 COG2079 Uncharacterized protein involved in propionate catabolism; 2-methylcitrate dehydratase 2627521 prpD 1171376002539 prpD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-methylcitrate dehydratase YP_007903605.1 2626070 R 1171376 CDS YP_007903606.1 482905046 complement(2627561..2628730) 1 NC_021151.1 COG0372 Citrate synthase; methylcitrate synthase 2628730 1171376002540 STU288_12545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylcitrate synthase YP_007903606.1 2627561 R 1171376 CDS YP_007903607.1 482905047 complement(2628853..2629740) 1 NC_021151.1 COG2513 PEP phosphonomutase and related enzymes; 2-methylisocitrate lyase 2629740 prpB 1171376002541 prpB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-methylisocitrate lyase YP_007903607.1 2628853 R 1171376 CDS YP_007903608.1 482905048 2630004..2631629 1 NC_021151.1 COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; propionate catabolism operon regulatory protein PrpR 2631629 1171376002542 STU288_12555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propionate catabolism operon regulatory protein PrpR YP_007903608.1 2630004 D 1171376 CDS YP_007903609.1 482905049 complement(2631765..2632040) 1 NC_021151.1 hypothetical protein 2632040 1171376002543 STU288_12560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903609.1 2631765 R 1171376 CDS YP_007903610.1 482905050 2632272..2632904 1 NC_021151.1 COG1280 Putative threonine efflux protein; Threonine efflux protein 2632904 1171376002544 STU288_12565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Threonine efflux protein YP_007903610.1 2632272 D 1171376 CDS YP_007903611.1 482905051 complement(2632945..2635035) 1 NC_021151.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrioxamine receptor 2635035 1171376002545 STU288_12570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrioxamine receptor YP_007903611.1 2632945 R 1171376 CDS YP_007903612.1 482905052 complement(2635199..2636203) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 2636203 1171376002546 STU288_12575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AraC family transcriptional regulator YP_007903612.1 2635199 R 1171376 CDS YP_007903613.1 482905053 complement(2636409..2636540) 1 NC_021151.1 hypothetical protein 2636540 1171376002547 STU288_12580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903613.1 2636409 R 1171376 CDS YP_007903614.1 482905054 complement(2636540..2637550) 1 NC_021151.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; terminal oxidase subunit II 2637550 1171376002548 STU288_12585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 terminal oxidase subunit II YP_007903614.1 2636540 R 1171376 CDS YP_007903615.1 482905055 complement(2637547..2638950) 1 NC_021151.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; putative terminal oxidase subunit I 2638950 1171376002549 STU288_12590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative terminal oxidase subunit I YP_007903615.1 2637547 R 1171376 CDS YP_007903616.1 482905056 complement(2639067..2639168) 1 NC_021151.1 hypothetical protein 2639168 1171376002550 STU288_12595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903616.1 2639067 R 1171376 CDS YP_007903617.1 482905057 complement(2639445..2642414) 1 NC_021151.1 COG3587 Restriction endonuclease; type III restriction-modification system StyLTI enzyme res 2642414 1171376002551 STU288_12600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III restriction-modification system StyLTI enzyme res YP_007903617.1 2639445 R 1171376 CDS YP_007903618.1 482905058 complement(2642427..2644385) 1 NC_021151.1 COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system enzyme (StyLTI) modification methylase 2644385 1171376002552 STU288_12605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III restriction-modification system enzyme (StyLTI) modification methylase YP_007903618.1 2642427 R 1171376 CDS YP_007903619.1 482905059 complement(2644574..2645827) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein 2645827 1171376002553 STU288_12610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903619.1 2644574 R 1171376 CDS YP_007903620.1 482905060 complement(2646120..2646314) 1 NC_021151.1 COG2608 Copper chaperone; putative copper chaperone 2646314 1171376002554 STU288_12615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative copper chaperone YP_007903620.1 2646120 R 1171376 CDS YP_007903621.1 482905061 complement(2646392..2646856) 1 NC_021151.1 COG0789 Predicted transcriptional regulators; MerR family transcriptional regulator 2646856 1171376002555 STU288_12620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MerR family transcriptional regulator YP_007903621.1 2646392 R 1171376 CDS YP_007903622.1 482905062 complement(2646868..2649156) 1 NC_021151.1 COG2217 Cation transport ATPase; putative cation transport ATPase 2649156 1171376002556 STU288_12625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cation transport ATPase YP_007903622.1 2646868 R 1171376 CDS YP_007903623.1 482905063 2649433..2650659 1 NC_021151.1 COG0845 Membrane-fusion protein; putative auxiliary transport protein, membrane fusion protein (MFP) family 2650659 1171376002557 STU288_12630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative auxiliary transport protein, membrane fusion protein (MFP) family YP_007903623.1 2649433 D 1171376 CDS YP_007903624.1 482905064 2650656..2653823 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; cation efflux protein 2653823 1171376002558 STU288_12635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation efflux protein YP_007903624.1 2650656 D 1171376 CDS YP_007903625.1 482905065 2653840..2655297 1 NC_021151.1 COG1538 Outer membrane protein; Putative outer membrane efflux protein 2655297 1171376002559 STU288_12640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative outer membrane efflux protein YP_007903625.1 2653840 D 1171376 CDS YP_007903626.1 482905066 complement(2655367..2655726) 1 NC_021151.1 cytochrome c type biogenesis protein CycH 2655726 1171376002560 STU288_12645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c type biogenesis protein CycH YP_007903626.1 2655367 R 1171376 CDS YP_007903627.1 482905067 complement(2655784..2656008) 1 NC_021151.1 putative inner membrane protein 2656008 1171376002561 STU288_12650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903627.1 2655784 R 1171376 CDS YP_007903628.1 482905068 complement(2656019..2656660) 1 NC_021151.1 COG2771 DNA-binding HTH domain-containing proteins; transcriptional regulator 2656660 1171376002562 STU288_12655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007903628.1 2656019 R 1171376 CDS YP_007903629.1 482905069 complement(2656804..2657328) 1 NC_021151.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; Attachment invasion locus protein Flags: Precursor 2657328 1171376002563 STU288_12660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Attachment invasion locus protein Flags: Precursor YP_007903629.1 2656804 R 1171376 CDS YP_007903630.1 482905070 complement(2657729..2658217) 1 NC_021151.1 putative inner membrane protein 2658217 1171376002564 STU288_12665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903630.1 2657729 R 1171376 CDS YP_007903631.1 482905071 complement(2658190..2658933) 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; transmembrane regulator 2658933 1171376002565 STU288_12670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transmembrane regulator YP_007903631.1 2658190 R 1171376 CDS YP_007903632.1 482905072 complement(2659033..2660583) 1 NC_021151.1 COG4943 Predicted signal transduction protein containing sensor and EAL domains; Putative diguanylate cyclase/phosphodiesterase domain 1 2660583 1171376002566 STU288_12675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative diguanylate cyclase/phosphodiesterase domain 1 YP_007903632.1 2659033 R 1171376 CDS YP_007903633.1 482905073 complement(2661379..2662113) 1 NC_021151.1 putative inner membrane protein 2662113 1171376002567 STU288_12690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903633.1 2661379 R 1171376 CDS YP_007903634.1 482905074 2662777..2663313 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; Fimbrial protein precursor 2663313 1171376002568 STU288_12695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Fimbrial protein precursor YP_007903634.1 2662777 D 1171376 CDS YP_007903635.1 482905075 2663375..2664136 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StbB 2664136 1171376002569 STU288_12700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein StbB YP_007903635.1 2663375 D 1171376 CDS YP_007903636.1 482905076 2664120..2666681 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StbC 2666681 1171376002570 STU288_12705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein StbC YP_007903636.1 2664120 D 1171376 CDS YP_007903637.1 482905077 2666686..2668011 1 NC_021151.1 fimbrial usher protein StbD 2668011 1171376002571 STU288_12710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial usher protein StbD YP_007903637.1 2666686 D 1171376 CDS YP_007903638.1 482905078 2667977..2668735 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone StbE 2668735 1171376002572 STU288_12715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial assembly chaperone StbE YP_007903638.1 2667977 D 1171376 CDS YP_007903639.1 482905079 complement(2668782..2669180) 1 NC_021151.1 putative outer membrane protein 2669180 1171376002573 STU288_12720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007903639.1 2668782 R 1171376 CDS YP_007903640.1 482905080 2669871..2670143 1 NC_021151.1 putative cytoplasmic protein 2670143 1171376002574 STU288_12725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903640.1 2669871 D 1171376 CDS YP_007903641.1 482905081 complement(2670088..2671053) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2671053 1171376002575 STU288_12730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903641.1 2670088 R 1171376 CDS YP_007903642.1 482905082 complement(2671087..2672001) 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hydrolase or acyltransferase 2672001 1171376002576 STU288_12735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase or acyltransferase YP_007903642.1 2671087 R 1171376 CDS YP_007903643.1 482905083 complement(2672001..2672879) 1 NC_021151.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); fumarylacetoacetate (faa) hydrolase 2672879 1171376002577 STU288_12740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarylacetoacetate (faa) hydrolase YP_007903643.1 2672001 R 1171376 CDS YP_007903644.1 482905084 complement(2672894..2673520) 1 NC_021151.1 COG0066 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit 2673520 1171376002578 STU288_12745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-isopropylmalate dehydratase small subunit YP_007903644.1 2672894 R 1171376 CDS YP_007903645.1 482905085 complement(2673522..2674943) 1 NC_021151.1 COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit 2674943 1171376002579 STU288_12750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isopropylmalate isomerase large subunit YP_007903645.1 2673522 R 1171376 CDS YP_007903646.1 482905086 complement(2675075..2676307) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative permease 2676307 1171376002580 STU288_12755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007903646.1 2675075 R 1171376 CDS YP_007903647.1 482905087 complement(2676654..2676953) 1 NC_021151.1 hypothetical protein 2676953 1171376002581 STU288_12760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903647.1 2676654 R 1171376 CDS YP_007903648.1 482905088 2677719..2678519 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; IS3 transposase 2678519 1171376002582 STU288_12775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IS3 transposase YP_007903648.1 2677719 D 1171376 CDS YP_007903649.1 482905089 2679179..2679541 1 NC_021151.1 Bactoprenol-linked glucose translocase 2679541 1171376002583 STU288_12780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Bactoprenol-linked glucose translocase YP_007903649.1 2679179 D 1171376 CDS YP_007903650.1 482905090 2679538..2680470 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase 2680470 1171376002584 STU288_12785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bactoprenol glucosyl transferase YP_007903650.1 2679538 D 1171376 CDS YP_007903651.1 482905091 2680460..2681917 1 NC_021151.1 GtrC 2681917 1171376002585 STU288_12790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GtrC YP_007903651.1 2680460 D 1171376 CDS YP_007903652.1 482905092 complement(2681976..2683979) 1 NC_021151.1 tail spike protein 2683979 1171376002586 STU288_12795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tail spike protein YP_007903652.1 2681976 R 1171376 CDS YP_007903653.1 482905093 2684115..2684363 1 NC_021151.1 regulatory protein 2684363 1171376002587 STU288_12800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007903653.1 2684115 D 1171376 CDS YP_007903654.1 482905094 complement(2684816..2686792) 1 NC_021151.1 COG2183 Transcriptional accessory protein; DNA transfer protein 2686792 1171376002588 STU288_12805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA transfer protein YP_007903654.1 2684816 R 1171376 CDS YP_007903655.1 482905095 complement(2686792..2688228) 1 NC_021151.1 DNA transfer protein 2688228 1171376002589 STU288_12810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA transfer protein YP_007903655.1 2686792 R 1171376 CDS YP_007903656.1 482905096 complement(2688239..2688928) 1 NC_021151.1 DNA transfer protein 2688928 1171376002590 STU288_12815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA transfer protein YP_007903656.1 2688239 R 1171376 CDS YP_007903657.1 482905097 complement(2688931..2689386) 1 NC_021151.1 hypothetical protein 2689386 1171376002591 STU288_12820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903657.1 2688931 R 1171376 CDS YP_007903658.1 482905098 complement(2689386..2690087) 1 NC_021151.1 gp26 2690087 1171376002592 STU288_12825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp26 YP_007903658.1 2689386 R 1171376 CDS YP_007903659.1 482905099 complement(2690091..2691509) 1 NC_021151.1 putative DNA stabilization protein 2691509 1171376002593 STU288_12830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA stabilization protein YP_007903659.1 2690091 R 1171376 CDS YP_007903660.1 482905100 complement(2691469..2691969) 1 NC_021151.1 gp4 2691969 1171376002594 STU288_12835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp4 YP_007903660.1 2691469 R 1171376 CDS YP_007903661.1 482905101 complement(2691953..2692513) 1 NC_021151.1 hypothetical protein 2692513 1171376002595 STU288_12840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903661.1 2691953 R 1171376 CDS YP_007903662.1 482905102 complement(2692554..2693846) 1 NC_021151.1 putative coat protein 2693846 1171376002596 STU288_12845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative coat protein YP_007903662.1 2692554 R 1171376 CDS YP_007903663.1 482905103 complement(2693846..2694757) 1 NC_021151.1 putative scaffolding protein 2694757 1171376002597 STU288_12850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative scaffolding protein YP_007903663.1 2693846 R 1171376 CDS YP_007903664.1 482905104 complement(2694771..2696948) 1 NC_021151.1 portal protein 2696948 1171376002598 STU288_12855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 portal protein YP_007903664.1 2694771 R 1171376 CDS YP_007903665.1 482905105 complement(2696948..2698456) 1 NC_021151.1 COG5565 Bacteriophage terminase large (ATPase) subunit and inactivated derivatives; putative terminase large subunit 2698456 1171376002599 STU288_12860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative terminase large subunit YP_007903665.1 2696948 R 1171376 CDS YP_007903666.1 482905106 complement(2698434..2698922) 1 NC_021151.1 terminase small subunit 2698922 1171376002600 STU288_12865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 terminase small subunit YP_007903666.1 2698434 R 1171376 CDS YP_007903667.1 482905107 complement(2699330..2699719) 1 NC_021151.1 COG2308 Uncharacterized conserved protein; hypothetical protein 2699719 1171376002601 STU288_12870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903667.1 2699330 R 1171376 CDS YP_007903668.1 482905108 complement(2699723..2699965) 1 NC_021151.1 hypothetical protein 2699965 1171376002602 STU288_12875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903668.1 2699723 R 1171376 CDS YP_007903669.1 482905109 complement(2700188..2700718) 1 NC_021151.1 hypothetical protein 2700718 1171376002603 STU288_12880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903669.1 2700188 R 1171376 CDS YP_007903670.1 482905110 complement(2700931..2701398) 1 NC_021151.1 gp15 2701398 1171376002604 STU288_12885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp15 YP_007903670.1 2700931 R 1171376 CDS YP_007903671.1 482905111 complement(2701395..2701865) 1 NC_021151.1 COG3772 Phage-related lysozyme (muraminidase); phage lysozyme 2701865 1171376002605 STU288_12890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage lysozyme YP_007903671.1 2701395 R 1171376 CDS YP_007903672.1 482905112 complement(2701870..2702073) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; gp13 holin, class II 2702073 1171376002606 STU288_12895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp13 holin, class II YP_007903672.1 2701870 R 1171376 CDS YP_007903673.1 482905113 complement(2702504..2703277) 1 NC_021151.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; hypothetical protein 2703277 1171376002607 STU288_12900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903673.1 2702504 R 1171376 CDS YP_007903674.1 482905114 complement(2703274..2703453) 1 NC_021151.1 hypothetical protein 2703453 1171376002608 STU288_12905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903674.1 2703274 R 1171376 CDS YP_007903675.1 482905115 complement(2703434..2703637) 1 NC_021151.1 hypothetical protein 2703637 1171376002609 STU288_12910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903675.1 2703434 R 1171376 CDS YP_007903676.1 482905116 complement(2703634..2703858) 1 NC_021151.1 putative protein ninY 2703858 1171376002610 STU288_12915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative protein ninY YP_007903676.1 2703634 R 1171376 CDS YP_007903677.1 482905117 complement(2703855..2704466) 1 NC_021151.1 protein NinG from prophage 2704466 1171376002611 STU288_12920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein NinG from prophage YP_007903677.1 2703855 R 1171376 CDS YP_007903678.1 482905118 complement(2704459..2704635) 1 NC_021151.1 hypothetical protein 2704635 1171376002612 STU288_12925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903678.1 2704459 R 1171376 CDS YP_007903679.1 482905119 complement(2704628..2704969) 1 NC_021151.1 hypothetical protein 2704969 1171376002613 STU288_12930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903679.1 2704628 R 1171376 CDS YP_007903680.1 482905120 complement(2704972..2705148) 1 NC_021151.1 hypothetical protein 2705148 1171376002614 STU288_12935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903680.1 2704972 R 1171376 CDS YP_007903681.1 482905121 complement(2705285..2705722) 1 NC_021151.1 recombination protein ninB from phage origin 2705722 1171376002615 STU288_12940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination protein ninB from phage origin YP_007903681.1 2705285 R 1171376 CDS YP_007903682.1 482905122 complement(2705719..2705799) 1 NC_021151.1 hypothetical protein 2705799 1171376002616 STU288_12945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903682.1 2705719 R 1171376 CDS YP_007903683.1 482905123 complement(2705796..2706065) 1 NC_021151.1 hypothetical protein 2706065 1171376002617 STU288_12950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903683.1 2705796 R 1171376 CDS YP_007903684.1 482905124 complement(2706062..2707438) 1 NC_021151.1 COG0305 Replicative DNA helicase; replicative DNA helicase 2707438 1171376002618 STU288_12955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replicative DNA helicase YP_007903684.1 2706062 R 1171376 CDS YP_007903685.1 482905125 complement(2707435..2708256) 1 NC_021151.1 bacteriophage replication protein O 2708256 1171376002619 STU288_12960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage replication protein O YP_007903685.1 2707435 R 1171376 CDS YP_007903686.1 482905126 complement(2708243..2708404) 1 NC_021151.1 prophage protein 2708404 1171376002620 STU288_12965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prophage protein YP_007903686.1 2708243 R 1171376 CDS YP_007903687.1 482905127 complement(2708439..2708720) 1 NC_021151.1 transcriptional activator-regulatory protein 2708720 1171376002621 STU288_12970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator-regulatory protein YP_007903687.1 2708439 R 1171376 CDS YP_007903688.1 482905128 complement(2708831..2709046) 1 NC_021151.1 COG4197 Uncharacterized protein conserved in bacteria, prophage-related; phage transcriptional regulator 2709046 1171376002622 STU288_12975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage transcriptional regulator YP_007903688.1 2708831 R 1171376 CDS YP_007903689.1 482905129 2709157..2709846 1 NC_021151.1 COG2932 Predicted transcriptional regulator; repressor protein cI 2709846 1171376002623 STU288_12980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 repressor protein cI YP_007903689.1 2709157 D 1171376 CDS YP_007903690.1 482905130 2710047..2711090 1 NC_021151.1 hypothetical protein 2711090 1171376002624 STU288_12985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903690.1 2710047 D 1171376 CDS YP_007903691.1 482905131 complement(2711129..2711332) 1 NC_021151.1 hypothetical protein 2711332 1171376002625 STU288_12990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903691.1 2711129 R 1171376 CDS YP_007903692.1 482905132 2711696..2711998 1 NC_021151.1 hypothetical protein 2711998 1171376002626 STU288_12995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903692.1 2711696 D 1171376 CDS YP_007903693.1 482905133 complement(2712011..2712598) 1 NC_021151.1 superinfection exclusion protein B 2712598 1171376002627 STU288_13000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 superinfection exclusion protein B YP_007903693.1 2712011 R 1171376 CDS YP_007903694.1 482905134 2712812..2713006 1 NC_021151.1 putative antirestriction protein 2713006 1171376002628 STU288_13005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative antirestriction protein YP_007903694.1 2712812 D 1171376 CDS YP_007903695.1 482905135 complement(2713144..2713548) 1 NC_021151.1 hypothetical protein 2713548 1171376002629 STU288_13010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903695.1 2713144 R 1171376 CDS YP_007903696.1 482905136 2713594..2713719 1 NC_021151.1 hypothetical protein 2713719 1171376002630 STU288_13015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903696.1 2713594 D 1171376 CDS YP_007903697.1 482905137 2713753..2714040 1 NC_021151.1 hypothetical protein 2714040 1171376002631 STU288_13020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903697.1 2713753 D 1171376 CDS YP_007903698.1 482905138 2714040..2714165 1 NC_021151.1 hypothetical protein 2714165 1171376002632 STU288_13025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903698.1 2714040 D 1171376 CDS YP_007903699.1 482905139 2714403..2714630 1 NC_021151.1 bacteriophage ST64T protein 17 2714630 1171376002633 STU288_13030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage ST64T protein 17 YP_007903699.1 2714403 D 1171376 CDS YP_007903700.1 482905140 2714700..2714873 1 NC_021151.1 C3-like protein 2714873 1171376002634 STU288_13035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 C3-like protein YP_007903700.1 2714700 D 1171376 CDS YP_007903701.1 482905141 2714821..2715042 1 NC_021151.1 bacteriophage ST104 protein Kil 2715042 1171376002635 STU288_13040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage ST104 protein Kil YP_007903701.1 2714821 D 1171376 CDS YP_007903702.1 482905142 2715032..2715175 1 NC_021151.1 hypothetical protein 2715175 1171376002636 STU288_13045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903702.1 2715032 D 1171376 CDS YP_007903703.1 482905143 2715172..2715879 1 NC_021151.1 COG4712 Uncharacterized protein conserved in bacteria; gp49 2715879 1171376002637 STU288_13050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp49 YP_007903703.1 2715172 D 1171376 CDS YP_007903704.1 482905144 2715879..2716163 1 NC_021151.1 hypothetical protein 2716163 1171376002638 STU288_13055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903704.1 2715879 D 1171376 CDS YP_007903705.1 482905145 2716210..2716503 1 NC_021151.1 anti-RecBCD protein 2 2716503 1171376002639 STU288_13060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-RecBCD protein 2 YP_007903705.1 2716210 D 1171376 CDS YP_007903706.1 482905146 2716514..2716684 1 NC_021151.1 hypothetical protein 2716684 1171376002640 STU288_13065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903706.1 2716514 D 1171376 CDS YP_007903707.1 482905147 2716681..2717190 1 NC_021151.1 hypothetical protein 2717190 1171376002641 STU288_13070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903707.1 2716681 D 1171376 CDS YP_007903708.1 482905148 2717260..2718051 1 NC_021151.1 hypothetical protein 2718051 1171376002642 STU288_13075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903708.1 2717260 D 1171376 CDS YP_007903709.1 482905149 2718051..2718335 1 NC_021151.1 hypothetical protein 2718335 1171376002643 STU288_13080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903709.1 2718051 D 1171376 CDS YP_007903710.1 482905150 2718328..2718612 1 NC_021151.1 hypothetical protein 2718612 1171376002644 STU288_13085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903710.1 2718328 D 1171376 CDS YP_007903711.1 482905151 2718684..2718821 1 NC_021151.1 hypothetical protein 2718821 1171376002645 STU288_13090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903711.1 2718684 D 1171376 CDS YP_007903712.1 482905152 2718824..2719174 1 NC_021151.1 excisionase 2719174 1171376002646 STU288_13095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excisionase YP_007903712.1 2718824 D 1171376 CDS YP_007903713.1 482905153 2719051..2720214 1 NC_021151.1 COG0582 Integrase; integrase 2720214 1171376002647 STU288_13100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase YP_007903713.1 2719051 D 1171376 CDS YP_007903714.1 482905154 complement(2720420..2721670) 1 NC_021151.1 COG0014 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 2721670 proA 1171376002649 proA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-glutamyl phosphate reductase YP_007903714.1 2720420 R 1171376 CDS YP_007903715.1 482905155 complement(2721682..2722785) 1 NC_021151.1 COG0263 Glutamate 5-kinase; gamma-glutamyl kinase 2722785 1171376002650 STU288_13110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-glutamyl kinase YP_007903715.1 2721682 R 1171376 CDS YP_007903716.1 482905156 2723068..2724120 1 NC_021151.1 COG3203 Outer membrane protein (porin); outer membrane phosphoporin protein E 2724120 1171376002651 STU288_13115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane phosphoporin protein E YP_007903716.1 2723068 D 1171376 CDS YP_007903717.1 482905157 complement(2724171..2724572) 1 NC_021151.1 DNA-binding transcriptional regulator Crl 2724572 1171376002652 STU288_13120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator Crl YP_007903717.1 2724171 R 1171376 CDS YP_007903718.1 482905158 complement(2724630..2725874) 1 NC_021151.1 COG1073 Hydrolases of the alpha/beta superfamily; fermentation/respiration switch protein 2725874 frsA 1171376002653 frsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fermentation/respiration switch protein YP_007903718.1 2724630 R 1171376 CDS YP_007903719.1 482905159 complement(2725963..2726421) 1 NC_021151.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; xanthine-guanine phosphoribosyltransferase 2726421 1171376002654 STU288_13130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xanthine-guanine phosphoribosyltransferase YP_007903719.1 2725963 R 1171376 CDS YP_007903720.1 482905160 2726670..2728127 1 NC_021151.1 COG2195 Di- and tripeptidases; aminoacyl-histidine dipeptidase 2728127 1171376002655 STU288_13135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoacyl-histidine dipeptidase YP_007903720.1 2726670 D 1171376 CDS YP_007903721.1 482905161 complement(2728283..2728897) 1 NC_021151.1 COG1186 Protein chain release factor B; peptide chain release factor-like protein 2728897 prfH 1171376002656 prfH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptide chain release factor-like protein YP_007903721.1 2728283 R 1171376 CDS YP_007903722.1 482905162 complement(2728894..2729055) 1 NC_021151.1 COG1690 Uncharacterized conserved protein; hypothetical protein 2729055 1171376002657 STU288_13145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903722.1 2728894 R 1171376 CDS YP_007903723.1 482905163 complement(2729052..2730026) 1 NC_021151.1 COG1690 Uncharacterized conserved protein; hypothetical protein 2730026 1171376002658 STU288_13150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903723.1 2729052 R 1171376 CDS YP_007903724.1 482905164 complement(2730245..2731300) 1 NC_021151.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV 2731300 1171376002659 STU288_13155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase IV YP_007903724.1 2730245 R 1171376 CDS YP_007903725.1 482905165 2731550..2732290 1 NC_021151.1 COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein 2732290 1171376002660 STU288_13160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903725.1 2731550 D 1171376 CDS YP_007903726.1 482905166 complement(2732261..2733028) 1 NC_021151.1 COG0121 Predicted glutamine amidotransferase; Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] Hexosephosphate aminotransferase 2733028 1171376002661 STU288_13165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] Hexosephosphate aminotransferase YP_007903726.1 2732261 R 1171376 CDS YP_007903727.1 482905167 complement(2733241..2733819) 1 NC_021151.1 COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 2733819 gmhA 1171376002662 gmhA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoheptose isomerase YP_007903727.1 2733241 R 1171376 CDS YP_007903728.1 482905168 2734059..2736503 1 NC_021151.1 COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 2736503 fadE 1171376002663 fadE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl-CoA dehydrogenase YP_007903728.1 2734059 D 1171376 CDS YP_007903729.1 482905169 2736612..2737379 1 NC_021151.1 COG0388 Predicted amidohydrolase; C-N hydrolase family amidase 2737379 1171376002664 STU288_13180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 C-N hydrolase family amidase YP_007903729.1 2736612 D 1171376 CDS YP_007903730.1 482905170 2737750..2738157 1 NC_021151.1 COG0732 Restriction endonuclease S subunits; putative secreted protein 2738157 1171376002665 STU288_13185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative secreted protein YP_007903730.1 2737750 D 1171376 CDS YP_007903731.1 482905171 2738488..2739207 1 NC_021151.1 COG3637 Opacity protein and related surface antigens; adhesin/invasin protein PagN 2739207 1171376002666 STU288_13190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adhesin/invasin protein PagN YP_007903731.1 2738488 D 1171376 CDS YP_007903732.1 482905172 complement(2739543..2740490) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2740490 1171376002667 STU288_13195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903732.1 2739543 R 1171376 CDS YP_007903733.1 482905173 complement(2740693..2740824) 1 NC_021151.1 Putative transposase 2740824 1171376002668 STU288_13200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative transposase YP_007903733.1 2740693 R 1171376 CDS YP_007903734.1 482905174 complement(2740965..2741225) 1 NC_021151.1 hypothetical protein 2741225 1171376002669 STU288_13205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903734.1 2740965 R 1171376 CDS YP_007903735.1 482905175 complement(2741305..2742126) 1 NC_021151.1 COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 2742126 1171376002670 STU288_13210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903735.1 2741305 R 1171376 CDS YP_007903736.1 482905176 complement(2742532..2743002) 1 NC_021151.1 pilin structural protein SafD 2743002 1171376002671 STU288_13215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pilin structural protein SafD YP_007903736.1 2742532 R 1171376 CDS YP_007903737.1 482905177 complement(2743024..2745534) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; pilin outer membrane usher protein SafC 2745534 1171376002672 STU288_13220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pilin outer membrane usher protein SafC YP_007903737.1 2743024 R 1171376 CDS YP_007903738.1 482905178 complement(2745558..2746295) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; pili assembly chaperone protein SafB 2746295 1171376002673 STU288_13225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pili assembly chaperone protein SafB YP_007903738.1 2745558 R 1171376 CDS YP_007903739.1 482905179 complement(2746379..2746879) 1 NC_021151.1 Saf-pilin pilus formation protein SafA 2746879 1171376002674 STU288_13230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Saf-pilin pilus formation protein SafA YP_007903739.1 2746379 R 1171376 CDS YP_007903740.1 482905180 complement(2747641..2747922) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; hypothetical protein 2747922 1171376002675 STU288_13235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903740.1 2747641 R 1171376 CDS YP_007903741.1 482905181 complement(2748148..2748345) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; putative transposase 2748345 1171376002676 STU288_13240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase YP_007903741.1 2748148 R 1171376 CDS YP_007903742.1 482905182 2748398..2748646 1 NC_021151.1 putative cytoplasmic protein 2748646 1171376002677 STU288_13245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903742.1 2748398 D 1171376 CDS YP_007903743.1 482905183 2748619..2748711 1 NC_021151.1 hypothetical protein 2748711 1171376002678 STU288_13250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903743.1 2748619 D 1171376 CDS YP_007903744.1 482905184 complement(2748748..2748999) 1 NC_021151.1 hypothetical protein 2748999 1171376002679 STU288_13255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903744.1 2748748 R 1171376 CDS YP_007903745.1 482905185 2749497..2749772 1 NC_021151.1 hypothetical protein 2749772 1171376002680 STU288_13260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903745.1 2749497 D 1171376 CDS YP_007903746.1 482905186 complement(2749825..2750262) 1 NC_021151.1 putative cytoplasmic protein 2750262 1171376002681 STU288_13265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903746.1 2749825 R 1171376 CDS YP_007903747.1 482905187 complement(2750300..2750440) 1 NC_021151.1 hypothetical protein 2750440 1171376002682 STU288_13270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903747.1 2750300 R 1171376 CDS YP_007903748.1 482905188 complement(2750825..2751271) 1 NC_021151.1 hypothetical protein 2751271 1171376002683 STU288_13275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903748.1 2750825 R 1171376 CDS YP_007903749.1 482905189 complement(2751265..2752098) 1 NC_021151.1 COG3209 Rhs family protein; Rhs-family protein 2752098 1171376002684 STU288_13280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Rhs-family protein YP_007903749.1 2751265 R 1171376 CDS YP_007903750.1 482905190 complement(2752198..2752461) 1 NC_021151.1 hypothetical protein 2752461 1171376002685 STU288_13285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903750.1 2752198 R 1171376 CDS YP_007903751.1 482905191 complement(2752455..2756549) 1 NC_021151.1 COG3209 Rhs family protein; putative RHS-like protein 2756549 1171376002686 STU288_13290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative RHS-like protein YP_007903751.1 2752455 R 1171376 CDS YP_007903752.1 482905192 complement(2756568..2757014) 1 NC_021151.1 COG5435 Uncharacterized conserved protein; hypothetical protein 2757014 1171376002687 STU288_13295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903752.1 2756568 R 1171376 CDS YP_007903753.1 482905193 complement(2757038..2759227) 1 NC_021151.1 COG3501 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 2759227 1171376002688 STU288_13300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903753.1 2757038 R 1171376 CDS YP_007903754.1 482905194 complement(2759624..2760142) 1 NC_021151.1 SPI-6 associated protein 2760142 1171376002689 STU288_13305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SPI-6 associated protein YP_007903754.1 2759624 R 1171376 CDS YP_007903755.1 482905195 complement(2760169..2760585) 1 NC_021151.1 COG4893 Uncharacterized protein conserved in bacteria; hypothetical protein 2760585 1171376002690 STU288_13310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903755.1 2760169 R 1171376 CDS YP_007903756.1 482905196 complement(2760582..2761370) 1 NC_021151.1 COG3913 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 2761370 1171376002691 STU288_13315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903756.1 2760582 R 1171376 CDS YP_007903757.1 482905197 complement(2761370..2765239) 1 NC_021151.1 COG3523 Uncharacterized protein conserved in bacteria; putative inner membrane protein 2765239 1171376002692 STU288_13320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903757.1 2761370 R 1171376 CDS YP_007903758.1 482905198 complement(2765273..2765629) 1 NC_021151.1 putative shiga-like toxin A subunit 2765629 1171376002693 STU288_13325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative shiga-like toxin A subunit YP_007903758.1 2765273 R 1171376 CDS YP_007903759.1 482905199 complement(2765907..2766680) 1 NC_021151.1 membrane protein, virulence associated protein 2766680 1171376002694 STU288_13330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane protein, virulence associated protein YP_007903759.1 2765907 R 1171376 CDS YP_007903760.1 482905200 complement(2766685..2767989) 1 NC_021151.1 COG3455 Uncharacterized protein conserved in bacteria; hypothetical protein 2767989 1171376002695 STU288_13335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903760.1 2766685 R 1171376 CDS YP_007903761.1 482905201 complement(2767986..2769329) 1 NC_021151.1 COG3522 Uncharacterized protein conserved in bacteria; type VI secretion protein 2769329 1171376002696 STU288_13340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type VI secretion protein YP_007903761.1 2767986 R 1171376 CDS YP_007903762.1 482905202 complement(2769333..2769869) 1 NC_021151.1 COG3521 Uncharacterized protein conserved in bacteria; putative outer membrane lipoprotein 2769869 1171376002697 STU288_13345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane lipoprotein YP_007903762.1 2769333 R 1171376 CDS YP_007903763.1 482905203 complement(2769936..2770421) 1 NC_021151.1 COG3157 Hemolysin-coregulated protein (uncharacterized); Protein hcp1 2770421 1171376002698 STU288_13350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein hcp1 YP_007903763.1 2769936 R 1171376 CDS YP_007903764.1 482905204 complement(2770564..2770935) 1 NC_021151.1 putative periplasmic protein 2770935 1171376002699 STU288_13355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative periplasmic protein YP_007903764.1 2770564 R 1171376 CDS YP_007903765.1 482905205 complement(2770932..2771417) 1 NC_021151.1 putative cytoplasmic protein 2771417 1171376002700 STU288_13360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903765.1 2770932 R 1171376 CDS YP_007903766.1 482905206 complement(2771547..2771654) 1 NC_021151.1 lipoprotein 2771654 1171376002701 STU288_13365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007903766.1 2771547 R 1171376 CDS YP_007903767.1 482905207 complement(2771722..2772207) 1 NC_021151.1 COG3157 Hemolysin-coregulated protein (uncharacterized); Protein hcp1 2772207 1171376002702 STU288_13370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein hcp1 YP_007903767.1 2771722 R 1171376 CDS YP_007903768.1 482905208 complement(2773093..2774601) 1 NC_021151.1 COG3517 Uncharacterized protein conserved in bacteria; SciI protein 2774601 1171376002703 STU288_13375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SciI protein YP_007903768.1 2773093 R 1171376 CDS YP_007903769.1 482905209 complement(2774625..2775167) 1 NC_021151.1 COG3516 Uncharacterized protein conserved in bacteria; SPI-6 associated protein 2775167 1171376002704 STU288_13380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SPI-6 associated protein YP_007903769.1 2774625 R 1171376 CDS YP_007903770.1 482905210 complement(2775267..2777906) 1 NC_021151.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; SPI-6 associated protein 2777906 1171376002705 STU288_13385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SPI-6 associated protein YP_007903770.1 2775267 R 1171376 CDS YP_007903771.1 482905211 2778274..2779176 1 NC_021151.1 SPI-6 associated protein 2779176 1171376002706 STU288_13390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SPI-6 associated protein YP_007903771.1 2778274 D 1171376 CDS YP_007903772.1 482905212 2779163..2779987 1 NC_021151.1 COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion; SciE protein 2779987 1171376002707 STU288_13395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SciE protein YP_007903772.1 2779163 D 1171376 CDS YP_007903773.1 482905213 2779984..2780478 1 NC_021151.1 COG3518 Uncharacterized protein conserved in bacteria; hypothetical protein 2780478 1171376002708 STU288_13400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903773.1 2779984 D 1171376 CDS YP_007903774.1 482905214 2780494..2782377 1 NC_021151.1 COG3519 Uncharacterized protein conserved in bacteria; hypothetical protein 2782377 1171376002709 STU288_13405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903774.1 2780494 D 1171376 CDS YP_007903775.1 482905215 2782374..2783369 1 NC_021151.1 COG3520 Uncharacterized protein conserved in bacteria; SPI-6 associated protein 2783369 1171376002710 STU288_13410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SPI-6 associated protein YP_007903775.1 2782374 D 1171376 CDS YP_007903776.1 482905216 2783380..2784435 1 NC_021151.1 COG3515 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 2784435 1171376002711 STU288_13415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903776.1 2783380 D 1171376 CDS YP_007903777.1 482905217 complement(2784526..2784633) 1 NC_021151.1 hypothetical protein 2784633 1171376002712 STU288_13420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903777.1 2784526 R 1171376 CDS YP_007903778.1 482905218 complement(2784967..2785698) 1 NC_021151.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon 2785698 1171376002714 STU288_13425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit epsilon YP_007903778.1 2784967 R 1171376 CDS YP_007903779.1 482905219 2785762..2786229 1 NC_021151.1 COG0328 Ribonuclease HI; ribonuclease H 2786229 rnhA 1171376002715 rnhA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease H YP_007903779.1 2785762 D 1171376 CDS YP_007903780.1 482905220 complement(2786226..2786948) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 2786948 1171376002716 STU288_13435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903780.1 2786226 R 1171376 CDS YP_007903781.1 482905221 2786983..2787738 1 NC_021151.1 COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase 2787738 1171376002717 STU288_13440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxyacylglutathione hydrolase YP_007903781.1 2786983 D 1171376 CDS YP_007903782.1 482905222 2787810..2789177 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D 2789177 mltD 1171376002718 mltD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane-bound lytic murein transglycosylase D YP_007903782.1 2787810 D 1171376 CDS YP_007903783.1 482905223 complement(2789233..2790003) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; putative methyltransferase 2790003 1171376002719 STU288_13450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative methyltransferase YP_007903783.1 2789233 R 1171376 CDS YP_007903784.1 482905224 complement(2790081..2790881) 1 NC_021151.1 COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein 2790881 1171376002720 STU288_13455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903784.1 2790081 R 1171376 CDS YP_007903785.1 482905225 complement(2791013..2792188) 1 NC_021151.1 COG2814 Arabinose efflux permease; inner membrane transport protein YdhP 2792188 1171376002721 STU288_13460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transport protein YdhP YP_007903785.1 2791013 R 1171376 CDS YP_007903786.1 482905226 2792293..2793207 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2793207 1171376002722 STU288_13465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007903786.1 2792293 D 1171376 CDS YP_007903787.1 482905227 complement(2793228..2794031) 1 NC_021151.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase B 2794031 dkgB 1171376002723 dkgB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,5-diketo-D-gluconate reductase B YP_007903787.1 2793228 R 1171376 CDS YP_007903788.1 482905228 complement(2800034..2802607) 1 NC_021151.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; protein disaggregation chaperone 2802607 1171376002729 STU288_13475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein disaggregation chaperone YP_007903788.1 2800034 R 1171376 CDS YP_007903789.1 482905229 complement(2802737..2803468) 1 NC_021151.1 COG1496 Uncharacterized conserved protein; hypothetical protein 2803468 1171376002730 STU288_13480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903789.1 2802737 R 1171376 CDS YP_007903790.1 482905230 complement(2803465..2804445) 1 NC_021151.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase D 2804445 rluD 1171376002731 rluD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA pseudouridine synthase D YP_007903790.1 2803465 R 1171376 CDS YP_007903791.1 482905231 2804577..2805314 1 NC_021151.1 COG4105 DNA uptake lipoprotein; outer membrane biogenesis protein BamD 2805314 1171376002732 STU288_13490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane biogenesis protein BamD YP_007903791.1 2804577 D 1171376 CDS YP_007903792.1 482905232 2805586..2805924 1 NC_021151.1 COG1544 Ribosome-associated protein Y (PSrp-1); translation inhibitor protein RaiA 2805924 1171376002733 STU288_13495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translation inhibitor protein RaiA YP_007903792.1 2805586 D 1171376 CDS YP_007903793.1 482905233 2806175..2807335 1 NC_021151.1 COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydratase 2807335 pheA 1171376002734 pheA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional chorismate mutase/prephenate dehydratase YP_007903793.1 2806175 D 1171376 CDS YP_007903794.1 482905234 complement(2807296..2808204) 1 NC_021151.1 COG3386 Gluconolactonase; SMP-30/Gluconolaconase/LRE domain-containing protein 2808204 1171376002735 STU288_13505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SMP-30/Gluconolaconase/LRE domain-containing protein YP_007903794.1 2807296 R 1171376 CDS YP_007903795.1 482905235 complement(2808262..2809383) 1 NC_021151.1 COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydrogenase 2809383 tyrA 1171376002736 tyrA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional chorismate mutase/prephenate dehydrogenase YP_007903795.1 2808262 R 1171376 CDS YP_007903796.1 482905236 complement(2809393..2810463) 1 NC_021151.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 2810463 1171376002737 STU288_13515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospho-2-dehydro-3-deoxyheptonate aldolase YP_007903796.1 2809393 R 1171376 CDS YP_007903797.1 482905237 2810903..2811421 1 NC_021151.1 hypothetical protein 2811421 1171376002738 STU288_13520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903797.1 2810903 D 1171376 CDS YP_007903798.1 482905238 2811414..2812634 1 NC_021151.1 COG2199 FOG: GGDEF domain; inner membrane diguanylate cyclase 2812634 1171376002739 STU288_13525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane diguanylate cyclase YP_007903798.1 2811414 D 1171376 CDS YP_007903799.1 482905239 complement(2812791..2813138) 1 NC_021151.1 COG0335 Ribosomal protein L19; 50S ribosomal protein L19 2813138 rplS 1171376002740 rplS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L19 YP_007903799.1 2812791 R 1171376 CDS YP_007903800.1 482905240 complement(2813179..2813946) 1 NC_021151.1 COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 2813946 trmD 1171376002741 trmD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA (guanine-N(1)-)-methyltransferase YP_007903800.1 2813179 R 1171376 CDS YP_007903801.1 482905241 complement(2813991..2814539) 1 NC_021151.1 COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM 2814539 rimM 1171376002742 rimM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA-processing protein RimM YP_007903801.1 2813991 R 1171376 CDS YP_007903802.1 482905242 complement(2814558..2814806) 1 NC_021151.1 COG0228 Ribosomal protein S16; 30S ribosomal protein S16 2814806 rpsP 1171376002743 rpsP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S16 YP_007903802.1 2814558 R 1171376 CDS YP_007903803.1 482905243 complement(2815120..2816481) 1 NC_021151.1 COG0541 Signal recognition particle GTPase; signal recognition particle protein 2816481 1171376002744 STU288_13550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 signal recognition particle protein YP_007903803.1 2815120 R 1171376 CDS YP_007903804.1 482905244 2816647..2817438 1 NC_021151.1 COG4137 ABC-type uncharacterized transport system, permease component; Cytochrome c biogenesis protein ccsA 2817438 1171376002745 STU288_13555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cytochrome c biogenesis protein ccsA YP_007903804.1 2816647 D 1171376 CDS YP_007903805.1 482905245 2817548..2818744 1 NC_021151.1 COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 2818744 1171376002746 STU288_13560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903805.1 2817548 D 1171376 CDS YP_007903806.1 482905246 2818865..2819470 1 NC_021151.1 hypothetical protein 2819470 1171376002747 STU288_13565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903806.1 2818865 D 1171376 CDS YP_007903807.1 482905247 complement(2819505..2820095) 1 NC_021151.1 COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE 2820095 1171376002748 STU288_13570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein GrpE YP_007903807.1 2819505 R 1171376 CDS YP_007903808.1 482905248 2820218..2821096 1 NC_021151.1 COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 2821096 ppnK 1171376002749 ppnK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inorganic polyphosphate/ATP-NAD kinase YP_007903808.1 2820218 D 1171376 CDS YP_007903809.1 482905249 2821182..2822843 1 NC_021151.1 COG0497 ATPase involved in DNA repair; recombination and repair protein 2822843 1171376002750 STU288_13580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination and repair protein YP_007903809.1 2821182 D 1171376 CDS YP_007903810.1 482905250 2822992..2823330 1 NC_021151.1 COG2913 Small protein A (tmRNA-binding); outer membrane biogenesis protein BamE 2823330 1171376002751 STU288_13585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane biogenesis protein BamE YP_007903810.1 2822992 D 1171376 CDS YP_007903811.1 482905251 complement(2823496..2823786) 1 NC_021151.1 COG2914 Uncharacterized protein conserved in bacteria; hypothetical protein 2823786 1171376002752 STU288_13590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903811.1 2823496 R 1171376 CDS YP_007903812.1 482905252 complement(2823776..2824213) 1 NC_021151.1 COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein 2824213 1171376002753 STU288_13595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903812.1 2823776 R 1171376 CDS YP_007903813.1 482905253 2824402..2824884 1 NC_021151.1 COG0691 tmRNA-binding protein; SsrA-binding protein 2824884 smpB 1171376002754 smpB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SsrA-binding protein YP_007903813.1 2824402 D 1171376 CDS YP_007903814.1 482905254 2825498..2836972 1 NC_021151.1 hypothetical protein 2836972 1171376002755 STU288_13605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903814.1 2825498 D 1171376 CDS YP_007903815.1 482905255 2837037..2838446 1 NC_021151.1 COG1538 Outer membrane protein; Outer membrane efflux protein 2838446 1171376002756 STU288_13610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Outer membrane efflux protein YP_007903815.1 2837037 D 1171376 CDS YP_007903816.1 482905256 2838443..2840623 1 NC_021151.1 COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Type I secretion protein, ATP-binding protein 2840623 1171376002757 STU288_13615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Type I secretion protein, ATP-binding protein YP_007903816.1 2838443 D 1171376 CDS YP_007903817.1 482905257 2840604..2841794 1 NC_021151.1 COG0845 Membrane-fusion protein; HlyD family secretion protein 2841794 1171376002758 STU288_13620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HlyD family secretion protein YP_007903817.1 2840604 D 1171376 CDS YP_007903818.1 482905258 complement(2842346..2842564) 1 NC_021151.1 late control-like protein 2842564 1171376002759 STU288_13625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 late control-like protein YP_007903818.1 2842346 R 1171376 CDS YP_007903819.1 482905259 complement(2842633..2843733) 1 NC_021151.1 COG3500 Phage protein D; late control-like protein 2843733 1171376002760 STU288_13630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 late control-like protein YP_007903819.1 2842633 R 1171376 CDS YP_007903820.1 482905260 complement(2843730..2844215) 1 NC_021151.1 COG3499 Phage protein U; bacteriophage tail protein 2844215 1171376002761 STU288_13635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage tail protein YP_007903820.1 2843730 R 1171376 CDS YP_007903821.1 482905261 complement(2844212..2847019) 1 NC_021151.1 COG5283 Phage-related tail protein; phage tail-like protein 2847019 1171376002762 STU288_13640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail-like protein YP_007903821.1 2844212 R 1171376 CDS YP_007903822.1 482905262 complement(2847012..2847131) 1 NC_021151.1 gpE-like protein 2847131 1171376002763 STU288_13645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gpE-like protein YP_007903822.1 2847012 R 1171376 CDS YP_007903823.1 482905263 complement(2847146..2847448) 1 NC_021151.1 phage tail protein E 2847448 1171376002764 STU288_13650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail protein E YP_007903823.1 2847146 R 1171376 CDS YP_007903824.1 482905264 complement(2847503..2848018) 1 NC_021151.1 COG3498 Phage tail tube protein FII; major tail tube protein 2848018 1171376002765 STU288_13655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major tail tube protein YP_007903824.1 2847503 R 1171376 CDS YP_007903825.1 482905265 complement(2848028..2849200) 1 NC_021151.1 COG3497 Phage tail sheath protein FI; major tail sheath protein 2849200 1171376002766 STU288_13660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major tail sheath protein YP_007903825.1 2848028 R 1171376 CDS YP_007903826.1 482905266 complement(2849303..2849860) 1 NC_021151.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA invertase-like protein 2849860 1171376002767 STU288_13665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA invertase-like protein YP_007903826.1 2849303 R 1171376 CDS YP_007903827.1 482905267 2849890..2850909 1 NC_021151.1 hypothetical protein 2850909 1171376002768 STU288_13670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903827.1 2849890 D 1171376 CDS YP_007903828.1 482905268 2850916..2851323 1 NC_021151.1 tail fiber assembly-likeprotein 2851323 1171376002769 STU288_13675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tail fiber assembly-likeprotein YP_007903828.1 2850916 D 1171376 CDS YP_007903829.1 482905269 complement(2851327..2851914) 1 NC_021151.1 hypothetical protein 2851914 1171376002770 STU288_13680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903829.1 2851327 R 1171376 CDS YP_007903830.1 482905270 complement(2851914..2853488) 1 NC_021151.1 COG5301 Phage-related tail fibre protein; phage tail-like protein 2853488 1171376002771 STU288_13685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail-like protein YP_007903830.1 2851914 R 1171376 CDS YP_007903831.1 482905271 complement(2853485..2854090) 1 NC_021151.1 COG4385 Bacteriophage P2-related tail formation protein; putative phage tail protein 2854090 1171376002772 STU288_13690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage tail protein YP_007903831.1 2853485 R 1171376 CDS YP_007903832.1 482905272 complement(2854083..2854991) 1 NC_021151.1 COG3948 Phage-related baseplate assembly protein; phage tail-like protein 2854991 1171376002773 STU288_13695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail-like protein YP_007903832.1 2854083 R 1171376 CDS YP_007903833.1 482905273 complement(2854978..2855337) 1 NC_021151.1 COG3628 Phage baseplate assembly protein W; base plate tail-like protein 2855337 1171376002774 STU288_13700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 base plate tail-like protein YP_007903833.1 2854978 R 1171376 CDS YP_007903834.1 482905274 complement(2855334..2855912) 1 NC_021151.1 COG4540 Phage P2 baseplate assembly protein gpV; phage baseplate assembly-like protein 2855912 1171376002775 STU288_13705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage baseplate assembly-like protein YP_007903834.1 2855334 R 1171376 CDS YP_007903835.1 482905275 complement(2855981..2856427) 1 NC_021151.1 phage tail-like protein 2856427 1171376002776 STU288_13710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail-like protein YP_007903835.1 2855981 R 1171376 CDS YP_007903836.1 482905276 complement(2856420..2856851) 1 NC_021151.1 putative phage tail protein 2856851 1171376002777 STU288_13715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage tail protein YP_007903836.1 2856420 R 1171376 CDS YP_007903837.1 482905277 complement(2856814..2856930) 1 NC_021151.1 Fels-2 prophage protein 2856930 1171376002778 STU288_13720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Fels-2 prophage protein YP_007903837.1 2856814 R 1171376 CDS YP_007903838.1 482905278 complement(2856947..2857375) 1 NC_021151.1 regulatory protein 2857375 1171376002779 STU288_13725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007903838.1 2856947 R 1171376 CDS YP_007903839.1 482905279 complement(2857752..2858261) 1 NC_021151.1 COG3772 Phage-related lysozyme (muraminidase); phage lysozyme 2858261 1171376002780 STU288_13740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage lysozyme YP_007903839.1 2857752 R 1171376 CDS YP_007903840.1 482905280 complement(2858242..2858457) 1 NC_021151.1 secretion protein 2858457 1171376002781 STU288_13745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secretion protein YP_007903840.1 2858242 R 1171376 CDS YP_007903841.1 482905281 complement(2858461..2858664) 1 NC_021151.1 COG5004 P2-like prophage tail protein X; phage tail-like protein 2858664 1171376002782 STU288_13750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail-like protein YP_007903841.1 2858461 R 1171376 CDS YP_007903842.1 482905282 complement(2858664..2859128) 1 NC_021151.1 capsid completion protein 2859128 1171376002783 STU288_13755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 capsid completion protein YP_007903842.1 2858664 R 1171376 CDS YP_007903843.1 482905283 complement(2859222..2859875) 1 NC_021151.1 terminase-like protein 2859875 1171376002784 STU288_13760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 terminase-like protein YP_007903843.1 2859222 R 1171376 CDS YP_007903844.1 482905284 complement(2859879..2860961) 1 NC_021151.1 major capsid-like protein 2860961 1171376002785 STU288_13765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major capsid-like protein YP_007903844.1 2859879 R 1171376 CDS YP_007903845.1 482905285 complement(2860978..2861811) 1 NC_021151.1 capsid scaffold-like protein 2861811 1171376002786 STU288_13770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 capsid scaffold-like protein YP_007903845.1 2860978 R 1171376 CDS YP_007903846.1 482905286 2861954..2863720 1 NC_021151.1 COG5484 Uncharacterized conserved protein; terminase-like protein 2863720 1171376002787 STU288_13775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 terminase-like protein YP_007903846.1 2861954 D 1171376 CDS YP_007903847.1 482905287 2863720..2864760 1 NC_021151.1 COG5518 Bacteriophage capsid portal protein; portal vertex-like protein 2864760 1171376002788 STU288_13780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 portal vertex-like protein YP_007903847.1 2863720 D 1171376 CDS YP_007903848.1 482905288 complement(2864846..2866543) 1 NC_021151.1 hypothetical protein 2866543 1171376002789 STU288_13785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903848.1 2864846 R 1171376 CDS YP_007903849.1 482905289 complement(2866811..2867488) 1 NC_021151.1 hypothetical protein 2867488 1171376002790 STU288_13790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903849.1 2866811 R 1171376 CDS YP_007903850.1 482905290 complement(2867602..2867835) 1 NC_021151.1 COG1158 Transcription termination factor; Prophage protein 2867835 1171376002791 STU288_13795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Prophage protein YP_007903850.1 2867602 R 1171376 CDS YP_007903851.1 482905291 complement(2867846..2868034) 1 NC_021151.1 hypothetical protein 2868034 1171376002792 STU288_13800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903851.1 2867846 R 1171376 CDS YP_007903852.1 482905292 complement(2868187..2870616) 1 NC_021151.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; hypothetical protein 2870616 1171376002793 STU288_13805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903852.1 2868187 R 1171376 CDS YP_007903853.1 482905293 complement(2870607..2871464) 1 NC_021151.1 COG0338 Site-specific DNA methylase; DNA adenine methylase-like protein 2871464 1171376002794 STU288_13810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA adenine methylase-like protein YP_007903853.1 2870607 R 1171376 CDS YP_007903854.1 482905294 complement(2871461..2871688) 1 NC_021151.1 COG1734 DnaK suppressor protein; C4-type zinc finger protein, DksA/TraR family 2871688 1171376002795 STU288_13815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 C4-type zinc finger protein, DksA/TraR family YP_007903854.1 2871461 R 1171376 CDS YP_007903855.1 482905295 complement(2871688..2871921) 1 NC_021151.1 hypothetical protein 2871921 1171376002796 STU288_13820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903855.1 2871688 R 1171376 CDS YP_007903856.1 482905296 complement(2871989..2872330) 1 NC_021151.1 hypothetical protein 2872330 1171376002797 STU288_13825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903856.1 2871989 R 1171376 CDS YP_007903857.1 482905297 2872550..2873008 1 NC_021151.1 hypothetical protein 2873008 1171376002798 STU288_13830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903857.1 2872550 D 1171376 CDS YP_007903858.1 482905298 complement(2872956..2873189) 1 NC_021151.1 hypothetical protein 2873189 1171376002799 STU288_13835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903858.1 2872956 R 1171376 CDS YP_007903859.1 482905299 complement(2873197..2873706) 1 NC_021151.1 phage regulatory protein 2873706 1171376002800 STU288_13840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage regulatory protein YP_007903859.1 2873197 R 1171376 CDS YP_007903860.1 482905300 complement(2873742..2873981) 1 NC_021151.1 phage regulatory protein 2873981 1171376002801 STU288_13845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage regulatory protein YP_007903860.1 2873742 R 1171376 CDS YP_007903861.1 482905301 2874098..2874730 1 NC_021151.1 COG2932 Predicted transcriptional regulator; phage repressor protein cI 2874730 1171376002802 STU288_13850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage repressor protein cI YP_007903861.1 2874098 D 1171376 CDS YP_007903862.1 482905302 2874734..2875759 1 NC_021151.1 COG0582 Integrase; phage integrase 2875759 1171376002803 STU288_13855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage integrase YP_007903862.1 2874734 D 1171376 CDS YP_007903863.1 482905303 2876088..2877152 1 NC_021151.1 COG0582 Integrase; integrase-like protein 2877152 1171376002804 STU288_13860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase-like protein YP_007903863.1 2876088 D 1171376 CDS YP_007903864.1 482905304 2877166..2877333 1 NC_021151.1 COG0582 Integrase; putative integrase 2877333 1171376002805 STU288_13865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative integrase YP_007903864.1 2877166 D 1171376 CDS YP_007903865.1 482905305 2877335..2877973 1 NC_021151.1 hypothetical protein 2877973 1171376002806 STU288_13870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903865.1 2877335 D 1171376 CDS YP_007903866.1 482905306 2878591..2879556 1 NC_021151.1 SEC-C motif protein 2879556 1171376002807 STU288_13875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SEC-C motif protein YP_007903866.1 2878591 D 1171376 CDS YP_007903867.1 482905307 complement(2879891..2880703) 1 NC_021151.1 COG2445 Uncharacterized conserved protein; hypothetical protein 2880703 1171376002808 STU288_13880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903867.1 2879891 R 1171376 CDS YP_007903868.1 482905308 2881169..2881384 1 NC_021151.1 COG3311 Predicted transcriptional regulator; Prophage CP4-57 regulatory protein (AlpA) 2881384 1171376002809 STU288_13885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Prophage CP4-57 regulatory protein (AlpA) YP_007903868.1 2881169 D 1171376 CDS YP_007903869.1 482905309 2881420..2883489 1 NC_021151.1 COG5519 Superfamily II helicase and inactivated derivatives; Phage DNA primase 2883489 1171376002810 STU288_13890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage DNA primase YP_007903869.1 2881420 D 1171376 CDS YP_007903870.1 482905310 2884106..2885275 1 NC_021151.1 COG0178 Excinuclease ATPase subunit; putative ATPase 2885275 1171376002811 STU288_13895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ATPase YP_007903870.1 2884106 D 1171376 CDS YP_007903871.1 482905311 2885272..2886138 1 NC_021151.1 hypothetical protein 2886138 1171376002812 STU288_13900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903871.1 2885272 D 1171376 CDS YP_007903872.1 482905312 complement(2886291..2886605) 1 NC_021151.1 COG1396 Predicted transcriptional regulators; putative transcriptional regulator 2886605 1171376002813 STU288_13905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007903872.1 2886291 R 1171376 CDS YP_007903873.1 482905313 2886742..2887026 1 NC_021151.1 COG3423 Predicted transcriptional regulator; Ner-like regulatory protein 2887026 1171376002814 STU288_13910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Ner-like regulatory protein YP_007903873.1 2886742 D 1171376 CDS YP_007903874.1 482905314 2887139..2887660 1 NC_021151.1 COG3730 Phosphotransferase system sorbitol-specific component IIC; PTS system glucitol/sorbitol-specific transporter subunit IIC 2887660 srlA 1171376002815 srlA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIC YP_007903874.1 2887139 D 1171376 CDS YP_007903875.1 482905315 2887657..2888031 1 NC_021151.1 COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 2888031 1171376002816 STU288_13920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_007903875.1 2887657 D 1171376 CDS YP_007903876.1 482905316 2888028..2889008 1 NC_021151.1 COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 2889008 srlE 1171376002817 srlE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIB YP_007903876.1 2888028 D 1171376 CDS YP_007903877.1 482905317 2889019..2890032 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase, Gfo/Idh/MocA family protein 2890032 1171376002818 STU288_13930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase, Gfo/Idh/MocA family protein YP_007903877.1 2889019 D 1171376 CDS YP_007903878.1 482905318 2890378..2891529 1 NC_021151.1 COG1401 GTPase subunit of restriction endonuclease; hexulose 6 phosphate synthase 2891529 1171376002819 STU288_13935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hexulose 6 phosphate synthase YP_007903878.1 2890378 D 1171376 CDS YP_007903879.1 482905319 complement(2891603..2892238) 1 NC_021151.1 COG0269 3-hexulose-6-phosphate synthase and related proteins; D-arabino-3-hexulose 6-phosphate formaldehyde lyase 2892238 1171376002820 STU288_13940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-arabino-3-hexulose 6-phosphate formaldehyde lyase YP_007903879.1 2891603 R 1171376 CDS YP_007903880.1 482905320 complement(2892262..2892825) 1 NC_021151.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; putative sugar phosphate aminotransferase 2892825 1171376002821 STU288_13945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sugar phosphate aminotransferase YP_007903880.1 2892262 R 1171376 CDS YP_007903881.1 482905321 complement(2892825..2893667) 1 NC_021151.1 COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes; glucose-6-phosphate isomerase 2893667 1171376002822 STU288_13950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-6-phosphate isomerase YP_007903881.1 2892825 R 1171376 CDS YP_007903882.1 482905322 complement(2893797..2895338) 1 NC_021151.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; putative phosphotransferase system IIC component 2895338 1171376002823 STU288_13955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phosphotransferase system IIC component YP_007903882.1 2893797 R 1171376 CDS YP_007903883.1 482905323 2895561..2897240 1 NC_021151.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2897240 1171376002824 STU288_13960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_007903883.1 2895561 D 1171376 CDS YP_007903884.1 482905324 2897240..2897422 1 NC_021151.1 hypothetical protein 2897422 1171376002825 STU288_13965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903884.1 2897240 D 1171376 CDS YP_007903885.1 482905325 2898357..2899232 1 NC_021151.1 COG4974 Site-specific recombinase XerD; Phage integrase 2899232 1171376002826 STU288_13970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage integrase YP_007903885.1 2898357 D 1171376 CDS YP_007903886.1 482905326 2899398..2901272 1 NC_021151.1 inner membrane protein 2901272 1171376002827 STU288_13975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007903886.1 2899398 D 1171376 CDS YP_007903887.1 482905327 complement(2901532..2902854) 1 NC_021151.1 putative inner membrane protein 2902854 1171376002828 STU288_13980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007903887.1 2901532 R 1171376 CDS YP_007903888.1 482905328 2903393..2903989 1 NC_021151.1 COG0582 Integrase; prophage integrase 2903989 1171376002829 STU288_13985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prophage integrase YP_007903888.1 2903393 D 1171376 CDS YP_007903889.1 482905329 complement(2904370..2904762) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; putative transposase 2904762 1171376002830 STU288_13990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase YP_007903889.1 2904370 R 1171376 CDS YP_007903890.1 482905330 complement(2904984..2905250) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; transposase 2905250 1171376002831 STU288_13995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007903890.1 2904984 R 1171376 CDS YP_007903891.1 482905331 complement(2905703..2906341) 1 NC_021151.1 putative cytoplasmic protein 2906341 1171376002832 STU288_14000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007903891.1 2905703 R 1171376 CDS YP_007903892.1 482905332 complement(2906338..2908320) 1 NC_021151.1 COG3972 Superfamily I DNA and RNA helicases; DNA/RNA helicase 2908320 1171376002833 STU288_14005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA/RNA helicase YP_007903892.1 2906338 R 1171376 CDS YP_007903893.1 482905333 2908599..2908898 1 NC_021151.1 COG2963 Transposase and inactivated derivatives; Mobile element protein 2908898 1171376002834 STU288_14010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Mobile element protein YP_007903893.1 2908599 D 1171376 CDS YP_007903894.1 482905334 2908895..2909761 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; transposase 2909761 1171376002835 STU288_14015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007903894.1 2908895 D 1171376 CDS YP_007903895.1 482905335 complement(2910287..2910463) 1 NC_021151.1 hypothetical protein 2910463 1171376002836 STU288_14020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903895.1 2910287 R 1171376 CDS YP_007903896.1 482905336 complement(2910541..2911071) 1 NC_021151.1 phase-1 flagellin repressor 2911071 1171376002837 STU288_14025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phase-1 flagellin repressor YP_007903896.1 2910541 R 1171376 CDS YP_007903897.1 482905337 complement(2911148..2912668) 1 NC_021151.1 COG1344 Flagellin and related hook-associated proteins; flagellin 2912668 1171376002838 STU288_14030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flagellin YP_007903897.1 2911148 R 1171376 CDS YP_007903898.1 482905338 2912760..2913332 1 NC_021151.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA-invertase 2913332 1171376002839 STU288_14035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-invertase YP_007903898.1 2912760 D 1171376 CDS YP_007903899.1 482905339 2914295..2915410 1 NC_021151.1 COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; putative glycosyl transferase 2915410 1171376002840 STU288_14040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycosyl transferase YP_007903899.1 2914295 D 1171376 CDS YP_007903900.1 482905340 2915491..2919144 1 NC_021151.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; iron transporter: fur regulated 2919144 1171376002841 STU288_14045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron transporter: fur regulated YP_007903900.1 2915491 D 1171376 CDS YP_007903901.1 482905341 2919254..2920498 1 NC_021151.1 COG2382 Enterochelin esterase and related enzymes; Enterochelin esterase-like protein (Fes) 2920498 1171376002842 STU288_14050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Enterochelin esterase-like protein (Fes) YP_007903901.1 2919254 D 1171376 CDS YP_007903902.1 482905342 2920530..2921465 1 NC_021151.1 COG2819 Predicted hydrolase of the alpha/beta superfamily; Periplasmic esterase IroE 2921465 1171376002843 STU288_14055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Periplasmic esterase IroE YP_007903902.1 2920530 D 1171376 CDS YP_007903903.1 482905343 complement(2921507..2923681) 1 NC_021151.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA 2923681 1171376002844 STU288_14060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane receptor FepA YP_007903903.1 2921507 R 1171376 CDS YP_007903904.1 482905344 complement(2924720..2925772) 1 NC_021151.1 COG1357 Uncharacterized low-complexity proteins; secreted effector protein PipB2 2925772 1171376002845 STU288_14065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 secreted effector protein PipB2 YP_007903904.1 2924720 R 1171376 CDS YP_007903905.1 482905345 2926291..2927220 1 NC_021151.1 COG2990 Uncharacterized protein conserved in bacteria; virulence protein 2927220 1171376002846 STU288_14070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 virulence protein YP_007903905.1 2926291 D 1171376 CDS YP_007903906.1 482905346 2927513..2928409 1 NC_021151.1 antimicrobial resistance protein Mig-14 2928409 1171376002847 STU288_14075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antimicrobial resistance protein Mig-14 YP_007903906.1 2927513 D 1171376 CDS YP_007903907.1 482905347 2928925..2929038 1 NC_021151.1 hypothetical protein 2929038 1171376002848 STU288_14080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903907.1 2928925 D 1171376 CDS YP_007903908.1 482905348 complement(2929131..2930144) 1 NC_021151.1 COG3376 High-affinity nickel permease; cation transporter 2930144 1171376002849 STU288_14085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cation transporter YP_007903908.1 2929131 R 1171376 CDS YP_007903909.1 482905349 complement(2930277..2931692) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; tricarboxylic transport: regulatory protein 2931692 1171376002850 STU288_14090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tricarboxylic transport: regulatory protein YP_007903909.1 2930277 R 1171376 CDS YP_007903910.1 482905350 complement(2931679..2932353) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein TctD 2932353 1171376002851 STU288_14095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulatory protein TctD YP_007903910.1 2931679 R 1171376 CDS YP_007903911.1 482905351 2932508..2933485 1 NC_021151.1 COG3181 Uncharacterized protein conserved in bacteria; UPF0065 protein yflP Flags: Precursor 2933485 1171376002852 STU288_14100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0065 protein yflP Flags: Precursor YP_007903911.1 2932508 D 1171376 CDS YP_007903912.1 482905352 2933500..2933931 1 NC_021151.1 hypothetical protein 2933931 1171376002853 STU288_14105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903912.1 2933500 D 1171376 CDS YP_007903913.1 482905353 2933942..2935456 1 NC_021151.1 COG3333 Uncharacterized protein conserved in bacteria; hypothetical protein 2935456 1171376002854 STU288_14110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903913.1 2933942 D 1171376 CDS YP_007903914.1 482905354 2935759..2936736 1 NC_021151.1 carbon starvation induced protein 2936736 1171376002855 STU288_14115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbon starvation induced protein YP_007903914.1 2935759 D 1171376 CDS YP_007903915.1 482905355 2936762..2938030 1 NC_021151.1 COG0579 Predicted dehydrogenase; hydroxyglutarate oxidase 2938030 1171376002856 STU288_14120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydroxyglutarate oxidase YP_007903915.1 2936762 D 1171376 CDS YP_007903916.1 482905356 2938052..2939500 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase I 2939500 gabD 1171376002857 gabD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 succinate-semialdehyde dehydrogenase I YP_007903916.1 2938052 D 1171376 CDS YP_007903917.1 482905357 2939515..2940798 1 NC_021151.1 COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate aminotransferase 2940798 1171376002858 STU288_14130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-aminobutyrate aminotransferase YP_007903917.1 2939515 D 1171376 CDS YP_007903918.1 482905358 2940928..2942328 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; gamma-aminobutyrate transporter 2942328 1171376002859 STU288_14135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-aminobutyrate transporter YP_007903918.1 2940928 D 1171376 CDS YP_007903919.1 482905359 2942370..2943047 1 NC_021151.1 COG1802 Transcriptional regulators; DNA-binding transcriptional regulator CsiR 2943047 1171376002860 STU288_14140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator CsiR YP_007903919.1 2942370 D 1171376 CDS YP_007903920.1 482905360 complement(2943069..2943518) 1 NC_021151.1 COG1652 Uncharacterized protein containing LysM domain; LysM domain/BON superfamily protein 2943518 1171376002861 STU288_14145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysM domain/BON superfamily protein YP_007903920.1 2943069 R 1171376 CDS YP_007903921.1 482905361 complement(2943618..2943776) 1 NC_021151.1 COG0401 Uncharacterized homolog of Blt101; hypothetical protein 2943776 1171376002862 STU288_14150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903921.1 2943618 R 1171376 CDS YP_007903922.1 482905362 2943959..2944258 1 NC_021151.1 COG0640 Predicted transcriptional regulators; regulatory protein ArsR 2944258 1171376002863 STU288_14155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein ArsR YP_007903922.1 2943959 D 1171376 CDS YP_007903923.1 482905363 2944268..2944795 1 NC_021151.1 COG0607 Rhodanese-related sulfurtransferase; Rhodanese-like sulfurtransferase 2944795 1171376002864 STU288_14160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Rhodanese-like sulfurtransferase YP_007903923.1 2944268 D 1171376 CDS YP_007903924.1 482905364 2944874..2945053 1 NC_021151.1 hypothetical protein 2945053 1171376002865 STU288_14165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903924.1 2944874 D 1171376 CDS YP_007903925.1 482905365 complement(2945143..2945544) 1 NC_021151.1 COG2916 DNA-binding protein H-NS; DNA binding protein, nucleoid-associated 2945544 1171376002866 STU288_14170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA binding protein, nucleoid-associated YP_007903925.1 2945143 R 1171376 CDS YP_007903926.1 482905366 2946243..2946692 1 NC_021151.1 hypothetical protein 2946692 1171376002867 STU288_14175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903926.1 2946243 D 1171376 CDS YP_007903927.1 482905367 complement(2946727..2947077) 1 NC_021151.1 hypothetical protein 2947077 1171376002868 STU288_14180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903927.1 2946727 R 1171376 CDS YP_007903928.1 482905368 2947239..2947565 1 NC_021151.1 COG4575 Uncharacterized conserved protein; hypothetical protein 2947565 1171376002869 STU288_14185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903928.1 2947239 D 1171376 CDS YP_007903929.1 482905369 complement(2947649..2948983) 1 NC_021151.1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; transcriptional regulator 2948983 1171376002870 STU288_14190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007903929.1 2947649 R 1171376 CDS YP_007903930.1 482905370 2949072..2949503 1 NC_021151.1 COG2128 Uncharacterized conserved protein; hypothetical protein 2949503 1171376002871 STU288_14195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903930.1 2949072 D 1171376 CDS YP_007903931.1 482905371 2949775..2950020 1 NC_021151.1 COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein 2950020 1171376002872 STU288_14200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaredoxin-like protein YP_007903931.1 2949775 D 1171376 CDS YP_007903932.1 482905372 2950017..2950427 1 NC_021151.1 COG1780 Protein involved in ribonucleotide reduction; ribonucleotide reductase stimulatory protein 2950427 nrdI 1171376002873 nrdI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleotide reductase stimulatory protein YP_007903932.1 2950017 D 1171376 CDS YP_007903933.1 482905373 2950463..2952544 1 NC_021151.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 2952544 1171376002874 STU288_14210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleotide-diphosphate reductase subunit alpha YP_007903933.1 2950463 D 1171376 CDS YP_007903934.1 482905374 2952555..2953514 1 NC_021151.1 COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 2953514 nrdF 1171376002875 nrdF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleotide-diphosphate reductase subunit beta YP_007903934.1 2952555 D 1171376 CDS YP_007903935.1 482905375 2953869..2955071 1 NC_021151.1 COG4175 ABC-type proline/glycine betaine transport system, ATPase component; glycine betaine transporter ATP-binding subunit 2955071 1171376002876 STU288_14220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine betaine transporter ATP-binding subunit YP_007903935.1 2953869 D 1171376 CDS YP_007903936.1 482905376 2955064..2956128 1 NC_021151.1 COG4176 ABC-type proline/glycine betaine transport system, permease component; glycine betaine transporter membrane protein 2956128 1171376002877 STU288_14225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine betaine transporter membrane protein YP_007903936.1 2955064 D 1171376 CDS YP_007903937.1 482905377 2956198..2957193 1 NC_021151.1 COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; glycine betaine transporter periplasmic subunit 2957193 proX 1171376002878 proX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine betaine transporter periplasmic subunit YP_007903937.1 2956198 D 1171376 CDS YP_007903938.1 482905378 2957358..2958542 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 2958542 1171376002879 STU288_14235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transporter YP_007903938.1 2957358 D 1171376 CDS YP_007903939.1 482905379 2959039..2959569 1 NC_021151.1 COG1846 Transcriptional regulators; transcriptional repressor MprA 2959569 1171376002880 STU288_14240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor MprA YP_007903939.1 2959039 D 1171376 CDS YP_007903940.1 482905380 2959696..2960868 1 NC_021151.1 COG1566 Multidrug resistance efflux pump; multidrug efflux system protein EmrA 2960868 1171376002881 STU288_14245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein EmrA YP_007903940.1 2959696 D 1171376 CDS YP_007903941.1 482905381 2960885..2962423 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein B 2962423 emrB 1171376002882 emrB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug resistance protein B YP_007903941.1 2960885 D 1171376 CDS YP_007903942.1 482905382 complement(2962472..2963842) 1 NC_021151.1 glycoporin 2963842 1171376002883 STU288_14255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycoporin YP_007903942.1 2962472 R 1171376 CDS YP_007903943.1 482905383 complement(2964188..2964703) 1 NC_021151.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase 2964703 1171376002884 STU288_14260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-ribosylhomocysteinase YP_007903943.1 2964188 R 1171376 CDS YP_007903944.1 482905384 complement(2964853..2966409) 1 NC_021151.1 COG2918 Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase 2966409 1171376002885 STU288_14265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate--cysteine ligase YP_007903944.1 2964853 R 1171376 CDS YP_007903945.1 482905385 complement(2966497..2966910) 1 NC_021151.1 COG1238 Predicted membrane protein; inner membrane protein YqaA 2966910 1171376002886 STU288_14270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YqaA YP_007903945.1 2966497 R 1171376 CDS YP_007903946.1 482905386 complement(2966907..2967473) 1 NC_021151.1 COG0637 Predicted phosphatase/phosphohexomutase; fructose-1-P/6-phosphogluconate phosphatase 2967473 1171376002887 STU288_14275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-1-P/6-phosphogluconate phosphatase YP_007903946.1 2966907 R 1171376 CDS YP_007903947.1 482905387 complement(2967556..2967717) 1 NC_021151.1 Phosphatase YqaB 2967717 1171376002888 STU288_14280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phosphatase YqaB YP_007903947.1 2967556 R 1171376 CDS YP_007903948.1 482905388 complement(2968598..2968783) 1 NC_021151.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator CsrA 2968783 1171376002893 STU288_14285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbon storage regulator CsrA YP_007903948.1 2968598 R 1171376 CDS YP_007903949.1 482905389 complement(2969018..2971648) 1 NC_021151.1 COG0013 Alanyl-tRNA synthetase; alanyl-tRNA ligase 2971648 alaS 1171376002894 alaS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alanyl-tRNA ligase YP_007903949.1 2969018 R 1171376 CDS YP_007903950.1 482905390 complement(2971884..2972384) 1 NC_021151.1 COG2137 Uncharacterized protein conserved in bacteria; recombination regulator RecX 2972384 recX 1171376002895 recX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination regulator RecX YP_007903950.1 2971884 R 1171376 CDS YP_007903951.1 482905391 complement(2972501..2973562) 1 NC_021151.1 COG0468 RecA/RadA recombinase; recombinase A 2973562 recA 1171376002896 recA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombinase A YP_007903951.1 2972501 R 1171376 CDS YP_007903952.1 482905392 complement(2973647..2974144) 1 NC_021151.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 2974144 1171376002897 STU288_14305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903952.1 2973647 R 1171376 CDS YP_007903953.1 482905393 complement(2974622..2975701) 1 NC_021151.1 COG2951 Membrane-bound lytic murein transglycosylase B; murein hydrolase B 2975701 1171376002898 STU288_14310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein hydrolase B YP_007903953.1 2974622 R 1171376 CDS YP_007903954.1 482905394 2975955..2976518 1 NC_021151.1 COG3730 Phosphotransferase system sorbitol-specific component IIC; PTS system glucitol/sorbitol-specific transporter subunit IIC 2976518 srlA 1171376002899 srlA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIC YP_007903954.1 2975955 D 1171376 CDS YP_007903955.1 482905395 2976515..2977486 1 NC_021151.1 COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 2977486 srlE 1171376002900 srlE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIB YP_007903955.1 2976515 D 1171376 CDS YP_007903956.1 482905396 2977498..2977860 1 NC_021151.1 COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 2977860 1171376002901 STU288_14325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_007903956.1 2977498 D 1171376 CDS YP_007903957.1 482905397 2977872..2978651 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate dehydrogenase 2978651 1171376002902 STU288_14330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sorbitol-6-phosphate dehydrogenase YP_007903957.1 2977872 D 1171376 CDS YP_007903958.1 482905398 2978727..2979086 1 NC_021151.1 COG4578 Glucitol operon activator; DNA-binding transcriptional activator GutM 2979086 1171376002903 STU288_14335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator GutM YP_007903958.1 2978727 D 1171376 CDS YP_007903959.1 482905399 2979284..2980057 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor SrlR 2980057 srlR 1171376002904 srlR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor SrlR YP_007903959.1 2979284 D 1171376 CDS YP_007903960.1 482905400 2980050..2981015 1 NC_021151.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 2981015 gutQ 1171376002905 gutQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-arabinose 5-phosphate isomerase YP_007903960.1 2980050 D 1171376 CDS YP_007903961.1 482905401 complement(2981012..2982532) 1 NC_021151.1 COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; anaerobic nitric oxide reductase transcription regulator 2982532 1171376002906 STU288_14350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic nitric oxide reductase transcription regulator YP_007903961.1 2981012 R 1171376 CDS YP_007903962.1 482905402 2982718..2984157 1 NC_021151.1 COG0426 Uncharacterized flavoproteins; anaerobic nitric oxide reductase flavorubredoxin 2984157 1171376002907 STU288_14355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic nitric oxide reductase flavorubredoxin YP_007903962.1 2982718 D 1171376 CDS YP_007903963.1 482905403 2984154..2985287 1 NC_021151.1 COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH:flavorubredoxin oxidoreductase 2985287 1171376002908 STU288_14360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:flavorubredoxin oxidoreductase YP_007903963.1 2984154 D 1171376 CDS YP_007903964.1 482905404 complement(2985384..2987624) 1 NC_021151.1 COG0068 Hydrogenase maturation factor; carbamoyl phosphate phosphatase HypF 2987624 1171376002909 STU288_14365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamoyl phosphate phosphatase HypF YP_007903964.1 2985384 R 1171376 CDS YP_007903965.1 482905405 complement(2987770..2988315) 1 NC_021151.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; formate dehydrogenase-H ferredoxin subunit 2988315 1171376002910 STU288_14370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase-H ferredoxin subunit YP_007903965.1 2987770 R 1171376 CDS YP_007903966.1 482905406 complement(2988516..2989325) 1 NC_021151.1 putative periplasmic or exported protein 2989325 1171376002911 STU288_14375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative periplasmic or exported protein YP_007903966.1 2988516 R 1171376 CDS YP_007903967.1 482905407 complement(2989352..2989822) 1 NC_021151.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 3 maturation protease 2989822 hycI 1171376002912 hycI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 3 maturation protease YP_007903967.1 2989352 R 1171376 CDS YP_007903968.1 482905408 complement(2989815..2990225) 1 NC_021151.1 formate hydrogenlyase maturation protein HycH 2990225 1171376002913 STU288_14385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate hydrogenlyase maturation protein HycH YP_007903968.1 2989815 R 1171376 CDS YP_007903969.1 482905409 complement(2990222..2990989) 1 NC_021151.1 COG3260 Ni,Fe-hydrogenase III small subunit; NAD(P)H-quinone oxidoreductase subunit K 2990989 1171376002914 STU288_14390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD(P)H-quinone oxidoreductase subunit K YP_007903969.1 2990222 R 1171376 CDS YP_007903970.1 482905410 complement(2990989..2991531) 1 NC_021151.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); formate hydrogenlyase complex iron-sulfur subunit 2991531 1171376002915 STU288_14395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate hydrogenlyase complex iron-sulfur subunit YP_007903970.1 2990989 R 1171376 CDS YP_007903971.1 482905411 complement(2991541..2993250) 1 NC_021151.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; hydrogenase 3 large subunit 2993250 hycE 1171376002916 hycE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 3 large subunit YP_007903971.1 2991541 R 1171376 CDS YP_007903972.1 482905412 complement(2993268..2994191) 1 NC_021151.1 COG0650 Formate hydrogenlyase subunit 4; hydrogenase 3 membrane subunit 2994191 hycD 1171376002917 hycD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 3 membrane subunit YP_007903972.1 2993268 R 1171376 CDS YP_007903973.1 482905413 complement(2994194..2996020) 1 NC_021151.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; formate hydrogenlyase subunit 3 2996020 1171376002918 STU288_14410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate hydrogenlyase subunit 3 YP_007903973.1 2994194 R 1171376 CDS YP_007903974.1 482905414 complement(2996020..2996628) 1 NC_021151.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; Formate hydrogenlyase subunit 2 FHL subunit 2 2996628 1171376002919 STU288_14415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Formate hydrogenlyase subunit 2 FHL subunit 2 YP_007903974.1 2996020 R 1171376 CDS YP_007903975.1 482905415 complement(2996774..2997235) 1 NC_021151.1 formate hydrogenlyase regulatory protein HycA 2997235 1171376002920 STU288_14420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate hydrogenlyase regulatory protein HycA YP_007903975.1 2996774 R 1171376 CDS YP_007903976.1 482905416 2997445..2997801 1 NC_021151.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 2997801 hypA 1171376002921 hypA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase nickel incorporation protein YP_007903976.1 2997445 D 1171376 CDS YP_007903977.1 482905417 2997870..2998742 1 NC_021151.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase nickel incorporation protein HypB 2998742 1171376002922 STU288_14430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase nickel incorporation protein HypB YP_007903977.1 2997870 D 1171376 CDS YP_007903978.1 482905418 2998733..2999005 1 NC_021151.1 COG0298 Hydrogenase maturation factor; hydrogenase assembly chaperone 2999005 1171376002923 STU288_14435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase assembly chaperone YP_007903978.1 2998733 D 1171376 CDS YP_007903979.1 482905419 2999005..3000126 1 NC_021151.1 COG0409 Hydrogenase maturation factor; hydrogenase isoenzymes formation protein HypD 3000126 1171376002924 STU288_14440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase isoenzymes formation protein HypD YP_007903979.1 2999005 D 1171376 CDS YP_007903980.1 482905420 3000123..3001133 1 NC_021151.1 COG0309 Hydrogenase maturation factor; carbamoyl dehydratase HypE 3001133 1171376002925 STU288_14445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamoyl dehydratase HypE YP_007903980.1 3000123 D 1171376 CDS YP_007903981.1 482905421 3001352..3003430 1 NC_021151.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; formate hydrogenlyase transcriptional activator FhlA 3003430 1171376002926 STU288_14450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate hydrogenlyase transcriptional activator FhlA YP_007903981.1 3001352 D 1171376 CDS YP_007903982.1 482905422 complement(3003492..3003836) 1 NC_021151.1 hypothetical protein 3003836 1171376002927 STU288_14455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007903982.1 3003492 R 1171376 CDS YP_007903983.1 482905423 3004018..3004935 1 NC_021151.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; periplasmic chelated iron-binding protein YfeA 3004935 1171376002928 STU288_14460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic chelated iron-binding protein YfeA YP_007903983.1 3004018 D 1171376 CDS YP_007903984.1 482905424 3004932..3005753 1 NC_021151.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component; manganese/iron transporter ATP-binding protein 3005753 1171376002929 STU288_14465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 manganese/iron transporter ATP-binding protein YP_007903984.1 3004932 D 1171376 CDS YP_007903985.1 482905425 3005750..3006610 1 NC_021151.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Chelated iron transport system membrane protein yfeD 3006610 1171376002930 STU288_14470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Chelated iron transport system membrane protein yfeD YP_007903985.1 3005750 D 1171376 CDS YP_007903986.1 482905426 3006601..3007449 1 NC_021151.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; iron transport protein, inner membrane component 3007449 1171376002931 STU288_14475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron transport protein, inner membrane component YP_007903986.1 3006601 D 1171376 CDS YP_007903987.1 482905427 complement(3007548..3008414) 1 NC_021151.1 effector protein YopJ 3008414 1171376002932 STU288_14480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 effector protein YopJ YP_007903987.1 3007548 R 1171376 CDS YP_007903988.1 482905428 complement(3008617..3009372) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional activator SprB 3009372 1171376002933 STU288_14485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator SprB YP_007903988.1 3008617 R 1171376 CDS YP_007903989.1 482905429 complement(3009757..3010644) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator SirC 3010644 1171376002934 STU288_14490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator SirC YP_007903989.1 3009757 R 1171376 CDS YP_007903990.1 482905430 complement(3010989..3011441) 1 NC_021151.1 type III secretion system effector protein OrgC 3011441 1171376002935 STU288_14495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system effector protein OrgC YP_007903990.1 3010989 R 1171376 CDS YP_007903991.1 482905431 complement(3011438..3012118) 1 NC_021151.1 invasion protein OrgB 3012118 1171376002936 STU288_14500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasion protein OrgB YP_007903991.1 3011438 R 1171376 CDS YP_007903992.1 482905432 complement(3012075..3012653) 1 NC_021151.1 invasion protein OrgA 3012653 1171376002937 STU288_14505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasion protein OrgA YP_007903992.1 3012075 R 1171376 CDS YP_007903993.1 482905433 complement(3012646..3013404) 1 NC_021151.1 COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein PrgK 3013404 1171376002938 STU288_14510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system lipoprotein PrgK YP_007903993.1 3012646 R 1171376 CDS YP_007903994.1 482905434 complement(3013401..3013706) 1 NC_021151.1 type III secretion system needle complex protein PrgJ 3013706 1171376002939 STU288_14515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system needle complex protein PrgJ YP_007903994.1 3013401 R 1171376 CDS YP_007903995.1 482905435 complement(3013725..3013967) 1 NC_021151.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; type III secretion system needle complex protein PrgI 3013967 1171376002940 STU288_14520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system needle complex protein PrgI YP_007903995.1 3013725 R 1171376 CDS YP_007903996.1 482905436 complement(3013992..3015170) 1 NC_021151.1 type III secretion system needle complex protein PrgH 3015170 1171376002941 STU288_14525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system needle complex protein PrgH YP_007903996.1 3013992 R 1171376 CDS YP_007903997.1 482905437 3015486..3016415 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator HilD 3016415 1171376002942 STU288_14530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator HilD YP_007903997.1 3015486 D 1171376 CDS YP_007903998.1 482905438 3017506..3019167 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; invasion protein regulator 3019167 1171376002943 STU288_14535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasion protein regulator YP_007903998.1 3017506 D 1171376 CDS YP_007903999.1 482905439 3019185..3019667 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); invasion protein IagB 3019667 1171376002944 STU288_14540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasion protein IagB YP_007903999.1 3019185 D 1171376 CDS YP_007904000.1 482905440 complement(3019721..3021352) 1 NC_021151.1 COG2453 Predicted protein-tyrosine phosphatase; pathogenicity island 1 effector protein StpP 3021352 1171376002945 STU288_14545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 effector protein StpP YP_007904000.1 3019721 R 1171376 CDS YP_007904001.1 482905441 complement(3021339..3021731) 1 NC_021151.1 chaperone protein SicP 3021731 1171376002946 STU288_14550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone protein SicP YP_007904001.1 3021339 R 1171376 CDS YP_007904002.1 482905442 complement(3021758..3021982) 1 NC_021151.1 putative cytoplasmic protein 3021982 1171376002947 STU288_14555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904002.1 3021758 R 1171376 CDS YP_007904003.1 482905443 complement(3022062..3022310) 1 NC_021151.1 COG0236 Acyl carrier protein; acyl carrier protein IacP 3022310 1171376002948 STU288_14560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyl carrier protein IacP YP_007904003.1 3022062 R 1171376 CDS YP_007904004.1 482905444 complement(3022329..3024386) 1 NC_021151.1 pathogenicity island 1 effector protein SipA 3024386 1171376002949 STU288_14565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 effector protein SipA YP_007904004.1 3022329 R 1171376 CDS YP_007904005.1 482905445 complement(3024405..3025436) 1 NC_021151.1 cell invasion protein SipD 3025436 1171376002950 STU288_14570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell invasion protein SipD YP_007904005.1 3024405 R 1171376 CDS YP_007904006.1 482905446 complement(3025507..3026736) 1 NC_021151.1 pathogenicity island 1 effector protein SipC 3026736 1171376002951 STU288_14575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 effector protein SipC YP_007904006.1 3025507 R 1171376 CDS YP_007904007.1 482905447 complement(3026764..3028545) 1 NC_021151.1 pathogenicity island 1 effector protein SipB 3028545 1171376002952 STU288_14580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 effector protein SipB YP_007904007.1 3026764 R 1171376 CDS YP_007904008.1 482905448 complement(3028548..3029045) 1 NC_021151.1 COG0457 FOG: TPR repeat; chaperone protein SicA 3029045 1171376002953 STU288_14585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone protein SicA YP_007904008.1 3028548 R 1171376 CDS YP_007904009.1 482905449 complement(3029183..3030253) 1 NC_021151.1 COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS 3030253 1171376002954 STU288_14590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaS YP_007904009.1 3029183 R 1171376 CDS YP_007904010.1 482905450 complement(3030240..3031031) 1 NC_021151.1 COG4791 Type III secretory pathway, component EscT; type III secretion system protein SpaR 3031031 1171376002955 STU288_14595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaR YP_007904010.1 3030240 R 1171376 CDS YP_007904011.1 482905451 complement(3031035..3031295) 1 NC_021151.1 COG4794 Type III secretory pathway, component EscS; type III secretion system protein SpaQ 3031295 1171376002956 STU288_14600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaQ YP_007904011.1 3031035 R 1171376 CDS YP_007904012.1 482905452 complement(3031321..3031995) 1 NC_021151.1 COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP 3031995 spaP 1171376002957 spaP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaP YP_007904012.1 3031321 R 1171376 CDS YP_007904013.1 482905453 complement(3031985..3032896) 1 NC_021151.1 COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SpaO 3032896 1171376002958 STU288_14610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaO YP_007904013.1 3031985 R 1171376 CDS YP_007904014.1 482905454 complement(3032896..3033906) 1 NC_021151.1 antigen presentation protein SpaN 3033906 1171376002959 STU288_14615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antigen presentation protein SpaN YP_007904014.1 3032896 R 1171376 CDS YP_007904015.1 482905455 complement(3033906..3034349) 1 NC_021151.1 type III secretion system protein SpaM 3034349 1171376002960 STU288_14620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein SpaM YP_007904015.1 3033906 R 1171376 CDS YP_007904016.1 482905456 complement(3034327..3035622) 1 NC_021151.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; ATP synthase SpaL 3035622 1171376002961 STU288_14625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP synthase SpaL YP_007904016.1 3034327 R 1171376 CDS YP_007904017.1 482905457 complement(3035619..3036026) 1 NC_021151.1 type III secretion system chaperone SpaK 3036026 1171376002962 STU288_14630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system chaperone SpaK YP_007904017.1 3035619 R 1171376 CDS YP_007904018.1 482905458 complement(3036050..3038107) 1 NC_021151.1 COG4789 Type III secretory pathway, component EscV; type III secretion system protein InvA 3038107 1171376002963 STU288_14635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein InvA YP_007904018.1 3036050 R 1171376 CDS YP_007904019.1 482905459 complement(3038132..3039250) 1 NC_021151.1 type III secretion system regulator InvE 3039250 1171376002964 STU288_14640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system regulator InvE YP_007904019.1 3038132 R 1171376 CDS YP_007904020.1 482905460 complement(3039247..3040935) 1 NC_021151.1 COG1450 Type II secretory pathway, component PulD; type III secretion system outer membrane pore InvG 3040935 1171376002965 STU288_14645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system outer membrane pore InvG YP_007904020.1 3039247 R 1171376 CDS YP_007904021.1 482905461 complement(3040932..3041582) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator InvF 3041582 1171376002966 STU288_14650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator InvF YP_007904021.1 3040932 R 1171376 CDS YP_007904022.1 482905462 3042039..3042482 1 NC_021151.1 invasion lipoprotein InvH 3042482 1171376002967 STU288_14655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 invasion lipoprotein InvH YP_007904022.1 3042039 D 1171376 CDS YP_007904023.1 482905463 3042913..3043362 1 NC_021151.1 putative cytoplasmic protein 3043362 1171376002968 STU288_14660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904023.1 3042913 D 1171376 CDS YP_007904024.1 482905464 3043347..3043694 1 NC_021151.1 PrpA and PrpB, metallophosphatase domain protein 3043694 1171376002969 STU288_14665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PrpA and PrpB, metallophosphatase domain protein YP_007904024.1 3043347 D 1171376 CDS YP_007904025.1 482905465 complement(3043967..3044293) 1 NC_021151.1 putative cytoplasmic protein 3044293 1171376002970 STU288_14670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904025.1 3043967 R 1171376 CDS YP_007904026.1 482905466 3044991..3045272 1 NC_021151.1 COG4453 Uncharacterized protein conserved in bacteria; ABC transporter permease 3045272 1171376002971 STU288_14675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter permease YP_007904026.1 3044991 D 1171376 CDS YP_007904027.1 482905467 3045269..3045796 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 3045796 1171376002972 STU288_14680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904027.1 3045269 D 1171376 CDS YP_007904028.1 482905468 complement(3045869..3046009) 1 NC_021151.1 putative cytoplasmic protein 3046009 1171376002973 STU288_14685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904028.1 3045869 R 1171376 CDS YP_007904029.1 482905469 3046421..3047077 1 NC_021151.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine-specific protein phosphatase 2 3047077 1171376002974 STU288_14690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine/threonine-specific protein phosphatase 2 YP_007904029.1 3046421 D 1171376 CDS YP_007904030.1 482905470 complement(3047249..3047434) 1 NC_021151.1 putative cytoplasmic protein 3047434 1171376002975 STU288_14695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904030.1 3047249 R 1171376 CDS YP_007904031.1 482905471 3047929..3050496 1 NC_021151.1 COG0249 Mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS 3050496 1171376002976 STU288_14700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA mismatch repair protein MutS YP_007904031.1 3047929 D 1171376 CDS YP_007904032.1 482905472 complement(3050552..3050932) 1 NC_021151.1 COG4460 Uncharacterized protein conserved in bacteria; hypothetical protein 3050932 1171376002977 STU288_14705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904032.1 3050552 R 1171376 CDS YP_007904033.1 482905473 complement(3050929..3052137) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Major Facilitator Superfamily protein 3052137 1171376002978 STU288_14710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Major Facilitator Superfamily protein YP_007904033.1 3050929 R 1171376 CDS YP_007904034.1 482905474 3052246..3053157 1 NC_021151.1 COG0583 Transcriptional regulator; putative transcriptional regulator 3053157 1171376002979 STU288_14715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904034.1 3052246 D 1171376 CDS YP_007904035.1 482905475 complement(3053199..3054695) 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; putative permease 3054695 1171376002980 STU288_14720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007904035.1 3053199 R 1171376 CDS YP_007904036.1 482905476 complement(3054692..3055642) 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; hypothetical protein 3055642 1171376002981 STU288_14725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904036.1 3054692 R 1171376 CDS YP_007904037.1 482905477 complement(3055682..3056458) 1 NC_021151.1 COG3622 Hydroxypyruvate isomerase; hypothetical protein 3056458 1171376002982 STU288_14730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904037.1 3055682 R 1171376 CDS YP_007904038.1 482905478 complement(3056463..3057101) 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; aldolase 3057101 1171376002983 STU288_14735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldolase YP_007904038.1 3056463 R 1171376 CDS YP_007904039.1 482905479 complement(3057098..3058360) 1 NC_021151.1 COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 3058360 1171376002984 STU288_14740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904039.1 3057098 R 1171376 CDS YP_007904040.1 482905480 complement(3058354..3059277) 1 NC_021151.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; D-beta-hydroxybutyrate dehydrogenase 3059277 1171376002985 STU288_14745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-beta-hydroxybutyrate dehydrogenase YP_007904040.1 3058354 R 1171376 CDS YP_007904041.1 482905481 3059474..3060238 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 3060238 1171376002986 STU288_14750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DeoR family transcriptional regulator YP_007904041.1 3059474 D 1171376 CDS YP_007904042.1 482905482 complement(3060257..3060661) 1 NC_021151.1 COG1846 Transcriptional regulators; transcriptional regulator 3060661 1171376002987 STU288_14755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904042.1 3060257 R 1171376 CDS YP_007904043.1 482905483 3060832..3061425 1 NC_021151.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 4-hydroxybenzoate decarboxylase subunit B 3061425 1171376002988 STU288_14760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxybenzoate decarboxylase subunit B YP_007904043.1 3060832 D 1171376 CDS YP_007904044.1 482905484 3061425..3062852 1 NC_021151.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 3062852 1171376002989 STU288_14765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904044.1 3061425 D 1171376 CDS YP_007904045.1 482905485 3062863..3063099 1 NC_021151.1 hypothetical protein 3063099 1171376002990 STU288_14770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904045.1 3062863 D 1171376 CDS YP_007904046.1 482905486 complement(3063144..3064136) 1 NC_021151.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoS 3064136 1171376002991 STU288_14775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase sigma factor RpoS YP_007904046.1 3063144 R 1171376 CDS YP_007904047.1 482905487 complement(3064199..3065332) 1 NC_021151.1 COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein NlpD 3065332 nlpD 1171376002992 nlpD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein NlpD YP_007904047.1 3064199 R 1171376 CDS YP_007904048.1 482905488 complement(3065508..3066134) 1 NC_021151.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 3066134 pcm 1171376002993 pcm Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein-L-isoaspartate O-methyltransferase YP_007904048.1 3065508 R 1171376 CDS YP_007904049.1 482905489 complement(3066128..3066889) 1 NC_021151.1 COG0496 Predicted acid phosphatase; 5'(3')-nucleotidase/polyphosphatase 3066889 surE 1171376002994 surE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5'(3')-nucleotidase/polyphosphatase YP_007904049.1 3066128 R 1171376 CDS YP_007904050.1 482905490 complement(3066870..3067919) 1 NC_021151.1 COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 3067919 truD 1171376002995 truD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA pseudouridine synthase D YP_007904050.1 3066870 R 1171376 CDS YP_007904051.1 482905491 complement(3067916..3068395) 1 NC_021151.1 COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3068395 ispF 1171376002996 ispF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_007904051.1 3067916 R 1171376 CDS YP_007904052.1 482905492 complement(3068395..3069105) 1 NC_021151.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3069105 ispD 1171376002997 ispD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_007904052.1 3068395 R 1171376 CDS YP_007904053.1 482905493 complement(3069124..3069435) 1 NC_021151.1 COG2919 Septum formation initiator; cell division protein FtsB 3069435 ftsB 1171376002998 ftsB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsB YP_007904053.1 3069124 R 1171376 CDS YP_007904054.1 482905494 complement(3070001..3070606) 1 NC_021151.1 COG0529 Adenylylsulfate kinase and related kinases; adenylylsulfate kinase 3070606 1171376002999 STU288_14825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylylsulfate kinase YP_007904054.1 3070001 R 1171376 CDS YP_007904055.1 482905495 complement(3070593..3072032) 1 NC_021151.1 COG2895 GTPases - Sulfate adenylate transferase subunit 1; sulfate adenylyltransferase subunit 1 3072032 cysN 1171376003000 cysN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate adenylyltransferase subunit 1 YP_007904055.1 3070593 R 1171376 CDS YP_007904056.1 482905496 complement(3072042..3072950) 1 NC_021151.1 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; sulfate adenylyltransferase subunit 2 3072950 1171376003001 STU288_14835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate adenylyltransferase subunit 2 YP_007904056.1 3072042 R 1171376 CDS YP_007904057.1 482905497 3073201..3074247 1 NC_021151.1 COG2234 Predicted aminopeptidases; alkaline phosphatase isozyme conversion aminopeptidase 3074247 1171376003002 STU288_14840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alkaline phosphatase isozyme conversion aminopeptidase YP_007904057.1 3073201 D 1171376 CDS YP_007904058.1 482905498 complement(3075834..3076127) 1 NC_021151.1 ssRNA endonuclease 3076127 1171376003003 STU288_14845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ssRNA endonuclease YP_007904058.1 3075834 R 1171376 CDS YP_007904059.1 482905499 complement(3076127..3077047) 1 NC_021151.1 COG1518 Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein Cas1 3077047 1171376003004 STU288_14850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CRISPR-associated protein Cas1 YP_007904059.1 3076127 R 1171376 CDS YP_007904060.1 482905500 complement(3077044..3077694) 1 NC_021151.1 CRISPR-associated protein, Cse3 family 3077694 1171376003005 STU288_14855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CRISPR-associated protein, Cse3 family YP_007904060.1 3077044 R 1171376 CDS YP_007904061.1 482905501 complement(3077676..3078422) 1 NC_021151.1 hypothetical protein 3078422 1171376003006 STU288_14860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904061.1 3077676 R 1171376 CDS YP_007904062.1 482905502 complement(3078433..3079491) 1 NC_021151.1 hypothetical protein 3079491 1171376003007 STU288_14865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904062.1 3078433 R 1171376 CDS YP_007904063.1 482905503 complement(3079505..3080065) 1 NC_021151.1 Cse2 family CRISPR-associated protein 3080065 1171376003008 STU288_14870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cse2 family CRISPR-associated protein YP_007904063.1 3079505 R 1171376 CDS YP_007904064.1 482905504 complement(3080062..3081618) 1 NC_021151.1 hypothetical protein 3081618 1171376003009 STU288_14875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904064.1 3080062 R 1171376 CDS YP_007904065.1 482905505 complement(3081630..3084293) 1 NC_021151.1 COG1203 Predicted helicases; putative helicase 3084293 1171376003010 STU288_14880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative helicase YP_007904065.1 3081630 R 1171376 CDS YP_007904066.1 482905506 3084738..3085691 1 NC_021151.1 pathogenicity island 1 effector protein SopD 3085691 1171376003011 STU288_14885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pathogenicity island 1 effector protein SopD YP_007904066.1 3084738 D 1171376 CDS YP_007904067.1 482905507 complement(3085779..3086513) 1 NC_021151.1 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase 3086513 1171376003012 STU288_14890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoadenosine phosphosulfate reductase YP_007904067.1 3085779 R 1171376 CDS YP_007904068.1 482905508 complement(3086589..3088301) 1 NC_021151.1 COG0155 Sulfite reductase, beta subunit (hemoprotein); sulfite reductase subunit beta 3088301 1171376003013 STU288_14895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfite reductase subunit beta YP_007904068.1 3086589 R 1171376 CDS YP_007904069.1 482905509 complement(3088301..3090100) 1 NC_021151.1 COG0369 Sulfite reductase, alpha subunit (flavoprotein); sulfite reductase subunit alpha 3090100 cysJ 1171376003014 cysJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfite reductase subunit alpha YP_007904069.1 3088301 R 1171376 CDS YP_007904070.1 482905510 3090524..3090886 1 NC_021151.1 COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 3090886 1171376003015 STU288_14905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_007904070.1 3090524 D 1171376 CDS YP_007904071.1 482905511 complement(3090974..3091771) 1 NC_021151.1 COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II; putative metal-dependent hydrolase 3091771 1171376003016 STU288_14910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative metal-dependent hydrolase YP_007904071.1 3090974 R 1171376 CDS YP_007904072.1 482905512 3093065..3093196 1 NC_021151.1 hypothetical protein 3093196 1171376003017 STU288_14915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904072.1 3093065 D 1171376 CDS YP_007904073.1 482905513 3093183..3093368 1 NC_021151.1 hypothetical protein 3093368 1171376003018 STU288_14920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904073.1 3093183 D 1171376 CDS YP_007904074.1 482905514 complement(3094147..3094818) 1 NC_021151.1 COG0602 Organic radical activating enzymes; putative molybdenum cofactor biosynthesis protein A 3094818 1171376003019 STU288_14925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative molybdenum cofactor biosynthesis protein A YP_007904074.1 3094147 R 1171376 CDS YP_007904075.1 482905515 complement(3094954..3096252) 1 NC_021151.1 COG0148 Enolase; enolase 3096252 eno 1171376003020 eno Salmonella enterica subsp. enterica serovar Typhimurium str. U288 enolase YP_007904075.1 3094954 R 1171376 CDS YP_007904076.1 482905516 complement(3096335..3097972) 1 NC_021151.1 COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase 3097972 pyrG 1171376003021 pyrG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CTP synthetase YP_007904076.1 3096335 R 1171376 CDS YP_007904077.1 482905517 complement(3098200..3099000) 1 NC_021151.1 COG1694 Predicted pyrophosphatase; nucleoside triphosphate pyrophosphohydrolase 3099000 mazG 1171376003022 mazG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside triphosphate pyrophosphohydrolase YP_007904077.1 3098200 R 1171376 CDS YP_007904078.1 482905518 3099606..3099758 1 NC_021151.1 fimbrial protein SteA 3099758 1171376003023 STU288_14945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein SteA YP_007904078.1 3099606 D 1171376 CDS YP_007904079.1 482905519 complement(3099768..3100064) 1 NC_021151.1 COG3668 Plasmid stabilization system protein; plasmid stabilization system protein, RelE/ParE family 3100064 1171376003024 STU288_14950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid stabilization system protein, RelE/ParE family YP_007904079.1 3099768 R 1171376 CDS YP_007904080.1 482905520 complement(3100030..3100317) 1 NC_021151.1 COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein 3100317 1171376003025 STU288_14955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904080.1 3100030 R 1171376 CDS YP_007904081.1 482905521 complement(3100470..3102704) 1 NC_021151.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; (p)ppGpp synthetase I/GTP pyrophosphokinase 3102704 relA 1171376003026 relA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 (p)ppGpp synthetase I/GTP pyrophosphokinase YP_007904081.1 3100470 R 1171376 CDS YP_007904082.1 482905522 complement(3102756..3104051) 1 NC_021151.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA m(5)U1939 methyltransferase 3104051 rumA 1171376003027 rumA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA m(5)U1939 methyltransferase YP_007904082.1 3102756 R 1171376 CDS YP_007904083.1 482905523 3104109..3106865 1 NC_021151.1 COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase BarA 3106865 1171376003028 STU288_14970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hybrid sensory histidine kinase BarA YP_007904083.1 3104109 D 1171376 CDS YP_007904084.1 482905524 complement(3106909..3108051) 1 NC_021151.1 COG1929 Glycerate kinase; putative glycerate kinase 2 3108051 1171376003029 STU288_14975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glycerate kinase 2 YP_007904084.1 3106909 R 1171376 CDS YP_007904085.1 482905525 complement(3108129..3109469) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase 3109469 gudD 1171376003030 gudD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucarate dehydratase YP_007904085.1 3108129 R 1171376 CDS YP_007904086.1 482905526 complement(3109490..3110830) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase 3110830 gudD 1171376003031 gudD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucarate dehydratase YP_007904086.1 3109490 R 1171376 CDS YP_007904087.1 482905527 complement(3110827..3112185) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative glucarate transporter D-glucarate permease 3112185 1171376003032 STU288_14990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glucarate transporter D-glucarate permease YP_007904087.1 3110827 R 1171376 CDS YP_007904088.1 482905528 complement(3112666..3113115) 1 NC_021151.1 COG0716 Flavodoxins; flavodoxin 3113115 1171376003033 STU288_14995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flavodoxin YP_007904088.1 3112666 R 1171376 CDS YP_007904089.1 482905529 complement(3113134..3113916) 1 NC_021151.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; tRNA pseudouridine synthase C 3113916 1171376003034 STU288_15000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA pseudouridine synthase C YP_007904089.1 3113134 R 1171376 CDS YP_007904090.1 482905530 complement(3113916..3114245) 1 NC_021151.1 COG3098 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3114245 1171376003035 STU288_15005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904090.1 3113916 R 1171376 CDS YP_007904091.1 482905531 complement(3114857..3115402) 1 NC_021151.1 SecY interacting protein Syd 3115402 1171376003036 STU288_15010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SecY interacting protein Syd YP_007904091.1 3114857 R 1171376 CDS YP_007904092.1 482905532 3115471..3116319 1 NC_021151.1 COG2904 Uncharacterized protein conserved in bacteria; 7-cyano-7-deazaguanine reductase 3116319 queF 1171376003037 queF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 7-cyano-7-deazaguanine reductase YP_007904092.1 3115471 D 1171376 CDS YP_007904093.1 482905533 3116432..3117796 1 NC_021151.1 COG1611 Predicted Rossmann fold nucleotide-binding protein; UPF0717 protein ygdH 3117796 1171376003038 STU288_15020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0717 protein ygdH YP_007904093.1 3116432 D 1171376 CDS YP_007904094.1 482905534 3118361..3119650 1 NC_021151.1 COG0814 Amino acid permeases; serine transporter 3119650 1171376003039 STU288_15025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine transporter YP_007904094.1 3118361 D 1171376 CDS YP_007904095.1 482905535 3119709..3121076 1 NC_021151.1 COG1760 L-serine deaminase; L-serine deaminase II 3121076 1171376003040 STU288_15030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-serine deaminase II YP_007904095.1 3119709 D 1171376 CDS YP_007904096.1 482905536 3121247..3122002 1 NC_021151.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); flap endonuclease-like protein 3122002 1171376003041 STU288_15035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flap endonuclease-like protein YP_007904096.1 3121247 D 1171376 CDS YP_007904097.1 482905537 complement(3122094..3123242) 1 NC_021151.1 COG1454 Alcohol dehydrogenase, class IV; L-1,2-propanediol oxidoreductase 3123242 1171376003042 STU288_15040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-1,2-propanediol oxidoreductase YP_007904097.1 3122094 R 1171376 CDS YP_007904098.1 482905538 complement(3123259..3123906) 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase 3123906 1171376003043 STU288_15045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-fuculose phosphate aldolase YP_007904098.1 3123259 R 1171376 CDS YP_007904099.1 482905539 3124461..3125777 1 NC_021151.1 COG0738 Fucose permease; L-fucose transporter 3125777 1171376003044 STU288_15050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-fucose transporter YP_007904099.1 3124461 D 1171376 CDS YP_007904100.1 482905540 3125809..3127584 1 NC_021151.1 COG2407 L-fucose isomerase and related proteins; L-fucose isomerase 3127584 fucI 1171376003045 fucI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-fucose isomerase YP_007904100.1 3125809 D 1171376 CDS YP_007904101.1 482905541 3127685..3129103 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; L-fuculokinase 3129103 1171376003046 STU288_15060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-fuculokinase YP_007904101.1 3127685 D 1171376 CDS YP_007904102.1 482905542 3129105..3129527 1 NC_021151.1 COG4154 Fucose dissimilation pathway protein FucU; L-fucose mutarotase 3129527 fucU 1171376003047 fucU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-fucose mutarotase YP_007904102.1 3129105 D 1171376 CDS YP_007904103.1 482905543 3129585..3130295 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional activator FucR 3130295 1171376003048 STU288_15070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator FucR YP_007904103.1 3129585 D 1171376 CDS YP_007904104.1 482905544 complement(3130354..3131454) 1 NC_021151.1 COG2933 Predicted SAM-dependent methyltransferase; 23S rRNA C2498 ribose 2'-O-ribose methyltransferase 3131454 1171376003049 STU288_15075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA C2498 ribose 2'-O-ribose methyltransferase YP_007904104.1 3130354 R 1171376 CDS YP_007904105.1 482905545 complement(3131447..3131842) 1 NC_021151.1 COG2363 Uncharacterized small membrane protein; hypothetical protein 3131842 1171376003050 STU288_15080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904105.1 3131447 R 1171376 CDS YP_007904106.1 482905546 complement(3131861..3132778) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator GcvA 3132778 1171376003051 STU288_15085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator GcvA YP_007904106.1 3131861 R 1171376 CDS YP_007904107.1 482905547 complement(3133125..3133352) 1 NC_021151.1 putative lipoprotein ygdI Flags: Precursor 3133352 1171376003052 STU288_15090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein ygdI Flags: Precursor YP_007904107.1 3133125 R 1171376 CDS YP_007904108.1 482905548 3133545..3134750 1 NC_021151.1 COG0520 Selenocysteine lyase; cysteine sulfinate desulfinase 3134750 1171376003053 STU288_15095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cysteine sulfinate desulfinase YP_007904108.1 3133545 D 1171376 CDS YP_007904109.1 482905549 3134750..3135193 1 NC_021151.1 COG2166 SufE protein probably involved in Fe-S center assembly; CsdA-binding activator 3135193 1171376003054 STU288_15100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CsdA-binding activator YP_007904109.1 3134750 D 1171376 CDS YP_007904110.1 482905550 3135466..3136380 1 NC_021151.1 COG2962 Predicted permeases; hypothetical protein 3136380 1171376003055 STU288_15105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904110.1 3135466 D 1171376 CDS YP_007904111.1 482905551 complement(3136432..3137238) 1 NC_021151.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; sulfur acceptor protein CsdL 3137238 1171376003056 STU288_15110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur acceptor protein CsdL YP_007904111.1 3136432 R 1171376 CDS YP_007904112.1 482905552 complement(3137348..3138445) 1 NC_021151.1 COG2821 Membrane-bound lytic murein transglycosylase; murein transglycosylase A 3138445 mltA 1171376003057 mltA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein transglycosylase A YP_007904112.1 3137348 R 1171376 CDS YP_007904113.1 482905553 complement(3138945..3140198) 1 NC_021151.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3140198 amiC 1171376003060 amiC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmuramoyl-L-alanine amidase YP_007904113.1 3138945 R 1171376 CDS YP_007904114.1 482905554 3140431..3141762 1 NC_021151.1 COG0548 Acetylglutamate kinase; N-acetylglutamate synthase 3141762 1171376003061 STU288_15125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylglutamate synthase YP_007904114.1 3140431 D 1171376 CDS YP_007904115.1 482905555 complement(3141865..3143700) 1 NC_021151.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exonuclease V subunit alpha 3143700 recD 1171376003062 recD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease V subunit alpha YP_007904115.1 3141865 R 1171376 CDS YP_007904116.1 482905556 complement(3143697..3147242) 1 NC_021151.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); exonuclease V subunit beta 3147242 recB 1171376003063 recB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease V subunit beta YP_007904116.1 3143697 R 1171376 CDS YP_007904117.1 482905557 complement(3147235..3150123) 1 NC_021151.1 COG0612 Predicted Zn-dependent peptidases; protease 3150123 1171376003064 STU288_15140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease YP_007904117.1 3147235 R 1171376 CDS YP_007904118.1 482905558 complement(3150301..3153672) 1 NC_021151.1 COG1330 Exonuclease V gamma subunit; exonuclease V subunit gamma 3153672 recC 1171376003065 recC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exonuclease V subunit gamma YP_007904118.1 3150301 R 1171376 CDS YP_007904119.1 482905559 complement(3153688..3154008) 1 NC_021151.1 hypothetical protein 3154008 1171376003066 STU288_15150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904119.1 3153688 R 1171376 CDS YP_007904120.1 482905560 complement(3153993..3154400) 1 NC_021151.1 hypothetical protein 3154400 1171376003067 STU288_15155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904120.1 3153993 R 1171376 CDS YP_007904121.1 482905561 complement(3154397..3154960) 1 NC_021151.1 hypothetical protein 3154960 1171376003068 STU288_15160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904121.1 3154397 R 1171376 CDS YP_007904122.1 482905562 complement(3154951..3155421) 1 NC_021151.1 hypothetical protein 3155421 1171376003069 STU288_15165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904122.1 3154951 R 1171376 CDS YP_007904123.1 482905563 complement(3155606..3156400) 1 NC_021151.1 COG0207 Thymidylate synthase; thymidylate synthase 3156400 thyA 1171376003070 thyA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thymidylate synthase YP_007904123.1 3155606 R 1171376 CDS YP_007904124.1 482905564 complement(3156407..3157282) 1 NC_021151.1 COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase 3157282 1171376003071 STU288_15175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prolipoprotein diacylglyceryl transferase YP_007904124.1 3156407 R 1171376 CDS YP_007904125.1 482905565 complement(3157498..3159744) 1 NC_021151.1 COG3605 Signal transduction protein containing GAF and PtsI domains; phosphoenolpyruvate-protein phosphotransferase 3159744 1171376003072 STU288_15180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate-protein phosphotransferase YP_007904125.1 3157498 R 1171376 CDS YP_007904126.1 482905566 complement(3159757..3160287) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; RNA pyrophosphohydrolase 3160287 1171376003073 STU288_15185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA pyrophosphohydrolase YP_007904126.1 3159757 R 1171376 CDS YP_007904127.1 482905567 3160970..3161665 1 NC_021151.1 COG3066 DNA mismatch repair protein; DNA mismatch repair protein 3161665 1171376003074 STU288_15190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA mismatch repair protein YP_007904127.1 3160970 D 1171376 CDS YP_007904128.1 482905568 3161847..3162560 1 NC_021151.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 3162560 1171376003075 STU288_15195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904128.1 3161847 D 1171376 CDS YP_007904129.1 482905569 3162730..3162948 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative lipoprotein ygdR Flags: Precursor 3162948 1171376003076 STU288_15200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein ygdR Flags: Precursor YP_007904129.1 3162730 D 1171376 CDS YP_007904130.1 482905570 3163139..3164179 1 NC_021151.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo-keto reductase 3164179 tas 1171376003077 tas Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldo-keto reductase YP_007904130.1 3163139 D 1171376 CDS YP_007904131.1 482905571 complement(3164266..3165468) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; lysophospholipid transporter LplT 3165468 1171376003078 STU288_15210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysophospholipid transporter LplT YP_007904131.1 3164266 R 1171376 CDS YP_007904132.1 482905572 complement(3165461..3167620) 1 NC_021151.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3167620 1171376003079 STU288_15215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_007904132.1 3165461 R 1171376 CDS YP_007904133.1 482905573 3168213..3169241 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalR 3169241 1171376003080 STU288_15220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator GalR YP_007904133.1 3168213 D 1171376 CDS YP_007904134.1 482905574 3169255..3170274 1 NC_021151.1 COG1609 Transcriptional regulators; putative transcriptional regulator 3170274 1171376003081 STU288_15225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904134.1 3169255 D 1171376 CDS YP_007904135.1 482905575 complement(3170284..3171546) 1 NC_021151.1 COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 3171546 1171376003082 STU288_15230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diaminopimelate decarboxylase YP_007904135.1 3170284 R 1171376 CDS YP_007904136.1 482905576 3171664..3172599 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator LysR 3172599 1171376003083 STU288_15235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator LysR YP_007904136.1 3171664 D 1171376 CDS YP_007904137.1 482905577 complement(3172571..3173278) 1 NC_021151.1 COG1794 Aspartate racemase; racemase 3173278 1171376003084 STU288_15240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 racemase YP_007904137.1 3172571 R 1171376 CDS YP_007904138.1 482905578 complement(3173391..3174809) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Galactose-proton symporter Galactose transporter 3174809 1171376003085 STU288_15245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Galactose-proton symporter Galactose transporter YP_007904138.1 3173391 R 1171376 CDS YP_007904139.1 482905579 complement(3175163..3175924) 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase 3175924 1171376003086 STU288_15250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-deoxy-D-gluconate 3-dehydrogenase YP_007904139.1 3175163 R 1171376 CDS YP_007904140.1 482905580 complement(3175981..3176817) 1 NC_021151.1 COG3717 5-keto 4-deoxyuronate isomerase; 5-keto-4-deoxyuronate isomerase 3176817 1171376003087 STU288_15255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5-keto-4-deoxyuronate isomerase YP_007904140.1 3175981 R 1171376 CDS YP_007904141.1 482905581 complement(3177247..3178425) 1 NC_021151.1 COG0183 Acetyl-CoA acetyltransferase; acyltransferase 3178425 1171376003088 STU288_15260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyltransferase YP_007904141.1 3177247 R 1171376 CDS YP_007904142.1 482905582 complement(3178548..3179411) 1 NC_021151.1 COG0583 Transcriptional regulator; putative transcriptional regulator 3179411 1171376003089 STU288_15265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904142.1 3178548 R 1171376 CDS YP_007904143.1 482905583 3179515..3179970 1 NC_021151.1 COG4125 Predicted membrane protein; putative inner membrane protein 3179970 1171376003090 STU288_15270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904143.1 3179515 D 1171376 CDS YP_007904144.1 482905584 3180112..3181341 1 NC_021151.1 COG0814 Amino acid permeases; amino acid transport protein 3181341 1171376003091 STU288_15275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 amino acid transport protein YP_007904144.1 3180112 D 1171376 CDS YP_007904145.1 482905585 complement(3181372..3181644) 1 NC_021151.1 COG1937 Uncharacterized protein conserved in bacteria; transcriptional repressor RcnR to maintain nickel and cobalt homeostasis 3181644 1171376003092 STU288_15280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis YP_007904145.1 3181372 R 1171376 CDS YP_007904146.1 482905586 3181766..3182662 1 NC_021151.1 COG2215 ABC-type uncharacterized transport system, permease component; nickel/cobalt efflux protein RcnA 3182662 1171376003093 STU288_15285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nickel/cobalt efflux protein RcnA YP_007904146.1 3181766 D 1171376 CDS YP_007904147.1 482905587 complement(3182872..3183630) 1 NC_021151.1 putative cytoplasmic protein 3183630 1171376003094 STU288_15290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904147.1 3182872 R 1171376 CDS YP_007904148.1 482905588 complement(3183617..3184129) 1 NC_021151.1 hypothetical protein 3184129 1171376003095 STU288_15295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904148.1 3183617 R 1171376 CDS YP_007904149.1 482905589 complement(3184273..3185349) 1 NC_021151.1 putative outer membrane protein 3185349 1171376003096 STU288_15300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007904149.1 3184273 R 1171376 CDS YP_007904150.1 482905590 complement(3185346..3186089) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein StdC 3186089 1171376003097 STU288_15305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein StdC YP_007904150.1 3185346 R 1171376 CDS YP_007904151.1 482905591 complement(3186130..3188619) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StdB 3188619 1171376003098 STU288_15310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein StdB YP_007904151.1 3186130 R 1171376 CDS YP_007904152.1 482905592 complement(3188739..3189323) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein StdA 3189323 1171376003099 STU288_15315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein StdA YP_007904152.1 3188739 R 1171376 CDS YP_007904153.1 482905593 complement(3190042..3190674) 1 NC_021151.1 hypothetical protein 3190674 1171376003100 STU288_15320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904153.1 3190042 R 1171376 CDS YP_007904154.1 482905594 complement(3190721..3191257) 1 NC_021151.1 Ail/OmpX-like protein 3191257 1171376003101 STU288_15325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Ail/OmpX-like protein YP_007904154.1 3190721 R 1171376 CDS YP_007904155.1 482905595 complement(3191937..3192395) 1 NC_021151.1 COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 3192395 1171376003102 STU288_15330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase for insertion sequence element IS200 YP_007904155.1 3191937 R 1171376 CDS YP_007904156.1 482905596 complement(3192775..3193173) 1 NC_021151.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein 3193173 1171376003103 STU288_15335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid maintenance protein YP_007904156.1 3192775 R 1171376 CDS YP_007904157.1 482905597 complement(3193173..3193400) 1 NC_021151.1 COG4456 Virulence-associated protein and related proteins; putative virulence-associated protein 3193400 1171376003104 STU288_15340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative virulence-associated protein YP_007904157.1 3193173 R 1171376 CDS YP_007904158.1 482905598 3193577..3193828 1 NC_021151.1 endonuclease 3193828 1171376003105 STU288_15345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease YP_007904158.1 3193577 D 1171376 CDS YP_007904159.1 482905599 3193825..3193920 1 NC_021151.1 hypothetical protein 3193920 1171376003106 STU288_15350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904159.1 3193825 D 1171376 CDS YP_007904160.1 482905600 3193974..3194090 1 NC_021151.1 hypothetical protein 3194090 1171376003107 STU288_15355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904160.1 3193974 D 1171376 CDS YP_007904161.1 482905601 3194109..3194909 1 NC_021151.1 putative inner membrane protein 3194909 1171376003108 STU288_15360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904161.1 3194109 D 1171376 CDS YP_007904162.1 482905602 complement(3195194..3195946) 1 NC_021151.1 COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein 3195946 1171376003110 STU288_15365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007904162.1 3195194 R 1171376 CDS YP_007904163.1 482905603 3196217..3196762 1 NC_021151.1 COG1443 Isopentenyldiphosphate isomerase; isopentenyl-diphosphate delta-isomerase 3196762 1171376003111 STU288_15370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isopentenyl-diphosphate delta-isomerase YP_007904163.1 3196217 D 1171376 CDS YP_007904164.1 482905604 complement(3196838..3198355) 1 NC_021151.1 COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA ligase 3198355 lysS 1171376003112 lysS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysyl-tRNA ligase YP_007904164.1 3196838 R 1171376 CDS YP_007904165.1 482905605 complement(3199568..3201301) 1 NC_021151.1 COG0608 Single-stranded DNA-specific exonuclease; ssDNA exonuclease RecJ 3201301 1171376003113 STU288_15390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ssDNA exonuclease RecJ YP_007904165.1 3199568 R 1171376 CDS YP_007904166.1 482905606 complement(3201307..3202020) 1 NC_021151.1 COG1651 Protein-disulfide isomerase; protein disulfide isomerase II DsbC 3202020 1171376003114 STU288_15395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein disulfide isomerase II DsbC YP_007904166.1 3201307 R 1171376 CDS YP_007904167.1 482905607 complement(3202044..3202940) 1 NC_021151.1 COG4974 Site-specific recombinase XerD; site-specific tyrosine recombinase XerD 3202940 xerD 1171376003115 xerD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 site-specific tyrosine recombinase XerD YP_007904167.1 3202044 R 1171376 CDS YP_007904168.1 482905608 3203053..3203574 1 NC_021151.1 COG0716 Flavodoxins; flavodoxin FldB 3203574 1171376003116 STU288_15405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flavodoxin FldB YP_007904168.1 3203053 D 1171376 CDS YP_007904169.1 482905609 complement(3203627..3204040) 1 NC_021151.1 hypothetical protein 3204040 1171376003117 STU288_15410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904169.1 3203627 R 1171376 CDS YP_007904170.1 482905610 complement(3204021..3204287) 1 NC_021151.1 COG2938 Uncharacterized conserved protein; hypothetical protein 3204287 1171376003118 STU288_15415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904170.1 3204021 R 1171376 CDS YP_007904171.1 482905611 3204286..3204522 1 NC_021151.1 COG0456 Acetyltransferases; hypothetical protein 3204522 1171376003119 STU288_15420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904171.1 3204286 D 1171376 CDS YP_007904172.1 482905612 3204537..3205517 1 NC_021151.1 COG0354 Predicted aminomethyltransferase related to GcvT; global regulator 3205517 1171376003120 STU288_15425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 global regulator YP_007904172.1 3204537 D 1171376 CDS YP_007904173.1 482905613 complement(3205633..3206292) 1 NC_021151.1 COG1272 Predicted membrane protein, hemolysin III homolog; hemolysin 3206292 1171376003121 STU288_15430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hemolysin YP_007904173.1 3205633 R 1171376 CDS YP_007904174.1 482905614 complement(3206456..3206767) 1 NC_021151.1 COG3097 Uncharacterized protein conserved in bacteria; hypothetical protein 3206767 1171376003122 STU288_15435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904174.1 3206456 R 1171376 CDS YP_007904175.1 482905615 3206926..3208359 1 NC_021151.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase BglA 3208359 1171376003123 STU288_15440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phospho-beta-glucosidase BglA YP_007904175.1 3206926 D 1171376 CDS YP_007904176.1 482905616 complement(3208407..3209300) 1 NC_021151.1 putative outer membrane protein 3209300 1171376003124 STU288_15445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007904176.1 3208407 R 1171376 CDS YP_007904177.1 482905617 complement(3209756..3212629) 1 NC_021151.1 COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase 3212629 1171376003125 STU288_15450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine dehydrogenase YP_007904177.1 3209756 R 1171376 CDS YP_007904178.1 482905618 complement(3212792..3213181) 1 NC_021151.1 COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system protein H 3213181 1171376003126 STU288_15455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine cleavage system protein H YP_007904178.1 3212792 R 1171376 CDS YP_007904179.1 482905619 complement(3213207..3214301) 1 NC_021151.1 COG0404 Glycine cleavage system T protein (aminomethyltransferase); glycine cleavage system aminomethyltransferase T 3214301 gcvT 1171376003127 gcvT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycine cleavage system aminomethyltransferase T YP_007904179.1 3213207 R 1171376 CDS YP_007904180.1 482905620 complement(3214756..3215958) 1 NC_021151.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; oxidoreductase 3215958 1171376003128 STU288_15465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007904180.1 3214756 R 1171376 CDS YP_007904181.1 482905621 complement(3216084..3217262) 1 NC_021151.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-6-methoxyphenyl hydroxylase 3217262 1171376003129 STU288_15470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-octaprenyl-6-methoxyphenyl hydroxylase YP_007904181.1 3216084 R 1171376 CDS YP_007904182.1 482905622 complement(3217259..3218575) 1 NC_021151.1 COG0006 Xaa-Pro aminopeptidase; proline aminopeptidase P II 3218575 1171376003130 STU288_15475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 proline aminopeptidase P II YP_007904182.1 3217259 R 1171376 CDS YP_007904183.1 482905623 complement(3218601..3219179) 1 NC_021151.1 COG3079 Uncharacterized protein conserved in bacteria; hypothetical protein 3219179 1171376003131 STU288_15480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904183.1 3218601 R 1171376 CDS YP_007904184.1 482905624 3219346..3219675 1 NC_021151.1 COG3027 Uncharacterized protein conserved in bacteria; Z-ring-associated protein 3219675 1171376003132 STU288_15485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Z-ring-associated protein YP_007904184.1 3219346 D 1171376 CDS YP_007904185.1 482905625 3219969..3220517 1 NC_021151.1 COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase family protein 3220517 1171376003133 STU288_15490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5-formyltetrahydrofolate cyclo-ligase family protein YP_007904185.1 3219969 D 1171376 CDS YP_007904186.1 482905626 complement(3220898..3222130) 1 NC_021151.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 3222130 1171376003134 STU288_15495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-3-phosphoglycerate dehydrogenase YP_007904186.1 3220898 R 1171376 CDS YP_007904187.1 482905627 complement(3222396..3223055) 1 NC_021151.1 COG0120 Ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A 3223055 1171376003135 STU288_15500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribose-5-phosphate isomerase A YP_007904187.1 3222396 R 1171376 CDS YP_007904188.1 482905628 3223209..3224102 1 NC_021151.1 COG0583 Transcriptional regulator; chromosome replication initiation inhibitor protein 3224102 1171376003136 STU288_15505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chromosome replication initiation inhibitor protein YP_007904188.1 3223209 D 1171376 CDS YP_007904189.1 482905629 complement(3224368..3225114) 1 NC_021151.1 COG2968 Uncharacterized conserved protein; oxidative stress defense protein 3225114 1171376003137 STU288_15510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidative stress defense protein YP_007904189.1 3224368 R 1171376 CDS YP_007904190.1 482905630 complement(3225208..3225843) 1 NC_021151.1 COG1279 Lysine efflux permease; arginine exporter protein 3225843 1171376003138 STU288_15515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine exporter protein YP_007904190.1 3225208 R 1171376 CDS YP_007904191.1 482905631 complement(3226043..3226903) 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS 3226903 1171376003139 STU288_15520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mechanosensitive channel MscS YP_007904191.1 3226043 R 1171376 CDS YP_007904192.1 482905632 complement(3227130..3228209) 1 NC_021151.1 COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 3228209 1171376003140 STU288_15525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-bisphosphate aldolase YP_007904192.1 3227130 R 1171376 CDS YP_007904193.1 482905633 complement(3228311..3229474) 1 NC_021151.1 COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase 3229474 pgk 1171376003141 pgk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate kinase YP_007904193.1 3228311 R 1171376 CDS YP_007904194.1 482905634 complement(3229496..3230542) 1 NC_021151.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; erythrose 4-phosphate dehydrogenase 3230542 1171376003142 STU288_15535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 erythrose 4-phosphate dehydrogenase YP_007904194.1 3229496 R 1171376 CDS YP_007904195.1 482905635 3230916..3231341 1 NC_021151.1 COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif; hypothetical protein 3231341 1171376003143 STU288_15540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904195.1 3230916 D 1171376 CDS YP_007904196.1 482905636 3231367..3231945 1 NC_021151.1 putative inner membrane protein 3231945 1171376003144 STU288_15545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904196.1 3231367 D 1171376 CDS YP_007904197.1 482905637 3231946..3232653 1 NC_021151.1 COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; hypothetical protein 3232653 1171376003145 STU288_15550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904197.1 3231946 D 1171376 CDS YP_007904198.1 482905638 3232641..3233318 1 NC_021151.1 COG1122 ABC-type cobalt transport system, ATPase component; hypothetical protein 3233318 1171376003146 STU288_15555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904198.1 3232641 D 1171376 CDS YP_007904199.1 482905639 3233312..3233968 1 NC_021151.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; putative ABC-type cobalt transport system, ATPase component 3233968 1171376003147 STU288_15560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ABC-type cobalt transport system, ATPase component YP_007904199.1 3233312 D 1171376 CDS YP_007904200.1 482905640 complement(3234012..3236003) 1 NC_021151.1 COG0021 Transketolase; transketolase 3236003 1171376003148 STU288_15565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transketolase YP_007904200.1 3234012 R 1171376 CDS YP_007904201.1 482905641 3236279..3237037 1 NC_021151.1 COG0501 Zn-dependent protease with chaperone function; putative metalloprotease 3237037 1171376003149 STU288_15570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative metalloprotease YP_007904201.1 3236279 D 1171376 CDS YP_007904202.1 482905642 complement(3237138..3238058) 1 NC_021151.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; agmatinase 3238058 1171376003150 STU288_15575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 agmatinase YP_007904202.1 3237138 R 1171376 CDS YP_007904203.1 482905643 complement(3238263..3239153) 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative hydrolase or acyltransferase 3239153 1171376003151 STU288_15580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative hydrolase or acyltransferase YP_007904203.1 3238263 R 1171376 CDS YP_007904204.1 482905644 complement(3239433..3239906) 1 NC_021151.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 3239906 1171376003152 STU288_15585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904204.1 3239433 R 1171376 CDS YP_007904205.1 482905645 complement(3239945..3240952) 1 NC_021151.1 COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase 3240952 1171376003153 STU288_15590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ureidoglycolate dehydrogenase YP_007904205.1 3239945 R 1171376 CDS YP_007904206.1 482905646 complement(3240966..3241982) 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; zinc binding dehydrogenase 3241982 1171376003154 STU288_15595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc binding dehydrogenase YP_007904206.1 3240966 R 1171376 CDS YP_007904207.1 482905647 complement(3241985..3243457) 1 NC_021151.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative mannitol dehydrogenase 3243457 1171376003155 STU288_15600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative mannitol dehydrogenase YP_007904207.1 3241985 R 1171376 CDS YP_007904208.1 482905648 3244298..3244411 1 NC_021151.1 putative racemase 3244411 1171376003156 STU288_15605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative racemase YP_007904208.1 3244298 D 1171376 CDS YP_007904209.1 482905649 3244558..3244647 1 NC_021151.1 mandelate racemase/muconate lactonizing protein 3244647 1171376003157 STU288_15610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mandelate racemase/muconate lactonizing protein YP_007904209.1 3244558 D 1171376 CDS YP_007904210.1 482905650 complement(3244726..3245475) 1 NC_021151.1 COG2186 Transcriptional regulators; GntR family transcriptional regulator 3245475 1171376003158 STU288_15615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007904210.1 3244726 R 1171376 CDS YP_007904211.1 482905651 complement(3245680..3246411) 1 NC_021151.1 outer membrane lipoprotein 3246411 1171376003159 STU288_15620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007904211.1 3245680 R 1171376 CDS YP_007904212.1 482905652 complement(3246555..3248531) 1 NC_021151.1 COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase 3248531 1171376003160 STU288_15625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine decarboxylase YP_007904212.1 3246555 R 1171376 CDS YP_007904213.1 482905653 complement(3248540..3248671) 1 NC_021151.1 hypothetical protein 3248671 1171376003161 STU288_15630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904213.1 3248540 R 1171376 CDS YP_007904214.1 482905654 complement(3248966..3249265) 1 NC_021151.1 putative inner membrane protein 3249265 1171376003162 STU288_15635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904214.1 3248966 R 1171376 CDS YP_007904215.1 482905655 3249321..3250475 1 NC_021151.1 COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3250475 1171376003163 STU288_15640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-adenosylmethionine synthetase YP_007904215.1 3249321 D 1171376 CDS YP_007904216.1 482905656 3250968..3252362 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; D-galactose transporter GalP 3252362 1171376003164 STU288_15645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-galactose transporter GalP YP_007904216.1 3250968 D 1171376 CDS YP_007904217.1 482905657 3252441..3252938 1 NC_021151.1 COG3091 Uncharacterized protein conserved in bacteria; hypothetical protein 3252938 1171376003165 STU288_15650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904217.1 3252441 D 1171376 CDS YP_007904218.1 482905658 3253033..3253740 1 NC_021151.1 COG2356 Endonuclease I; DNA-specific endonuclease I 3253740 1171376003166 STU288_15655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-specific endonuclease I YP_007904218.1 3253033 D 1171376 CDS YP_007904219.1 482905659 3253817..3254548 1 NC_021151.1 COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 3254548 1171376003167 STU288_15660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S ribosomal RNA methyltransferase RsmE YP_007904219.1 3253817 D 1171376 CDS YP_007904220.1 482905660 3254568..3255515 1 NC_021151.1 COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); glutathione synthetase 3255515 1171376003168 STU288_15665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione synthetase YP_007904220.1 3254568 D 1171376 CDS YP_007904221.1 482905661 3255731..3256294 1 NC_021151.1 COG1678 Putative transcriptional regulator; hypothetical protein 3256294 1171376003169 STU288_15670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904221.1 3255731 D 1171376 CDS YP_007904222.1 482905662 3256294..3256710 1 NC_021151.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 3256710 1171376003170 STU288_15675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Holliday junction resolvase-like protein YP_007904222.1 3256294 D 1171376 CDS YP_007904223.1 482905663 complement(3256757..3257443) 1 NC_021151.1 COG1414 Transcriptional regulator; global regulatory protein 3257443 1171376003171 STU288_15680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 global regulatory protein YP_007904223.1 3256757 R 1171376 CDS YP_007904224.1 482905664 complement(3257575..3258555) 1 NC_021151.1 COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; type II secretion, ATP-binding, protein 3258555 1171376003172 STU288_15685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type II secretion, ATP-binding, protein YP_007904224.1 3257575 R 1171376 CDS YP_007904225.1 482905665 3258573..3259277 1 NC_021151.1 COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 3259277 1171376003173 STU288_15690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904225.1 3258573 D 1171376 CDS YP_007904226.1 482905666 3259296..3259862 1 NC_021151.1 COG0762 Predicted integral membrane protein; resistance protein 3259862 1171376003174 STU288_15695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resistance protein YP_007904226.1 3259296 D 1171376 CDS YP_007904227.1 482905667 3259859..3260149 1 NC_021151.1 COG1872 Uncharacterized conserved protein; hypothetical protein 3260149 1171376003175 STU288_15700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904227.1 3259859 D 1171376 CDS YP_007904228.1 482905668 3260157..3260750 1 NC_021151.1 COG0127 Xanthosine triphosphate pyrophosphatase; dITP/XTP pyrophosphatase 3260750 1171376003176 STU288_15705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dITP/XTP pyrophosphatase YP_007904228.1 3260157 D 1171376 CDS YP_007904229.1 482905669 3260743..3261879 1 NC_021151.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; HemN family oxidoreductase 3261879 1171376003177 STU288_15710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HemN family oxidoreductase YP_007904229.1 3260743 D 1171376 CDS YP_007904230.1 482905670 complement(3261970..3262977) 1 NC_021151.1 hypothetical protein 3262977 1171376003178 STU288_15715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904230.1 3261970 R 1171376 CDS YP_007904231.1 482905671 complement(3263110..3264156) 1 NC_021151.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II 3264156 ansB 1171376003179 ansB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-asparaginase II YP_007904231.1 3263110 R 1171376 CDS YP_007904232.1 482905672 complement(3264345..3265064) 1 NC_021151.1 hypothetical protein 3265064 1171376003180 STU288_15725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904232.1 3264345 R 1171376 CDS YP_007904233.1 482905673 complement(3265114..3265440) 1 NC_021151.1 COG3171 Uncharacterized protein conserved in bacteria; hypothetical protein 3265440 1171376003181 STU288_15730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904233.1 3265114 R 1171376 CDS YP_007904234.1 482905674 complement(3265440..3266159) 1 NC_021151.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3266159 trmB 1171376003182 trmB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA (guanine-N(7)-)-methyltransferase YP_007904234.1 3265440 R 1171376 CDS YP_007904235.1 482905675 3266314..3267366 1 NC_021151.1 COG1194 A/G-specific DNA glycosylase; adenine DNA glycosylase 3267366 1171376003183 STU288_15740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenine DNA glycosylase YP_007904235.1 3266314 D 1171376 CDS YP_007904236.1 482905676 3267394..3267669 1 NC_021151.1 COG2924 Fe-S cluster protector protein; oxidative damage protection protein 3267669 1171376003184 STU288_15745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidative damage protection protein YP_007904236.1 3267394 D 1171376 CDS YP_007904237.1 482905677 3267785..3268867 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); murein transglycosylase C 3268867 mltC 1171376003185 mltC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 murein transglycosylase C YP_007904237.1 3267785 D 1171376 CDS YP_007904238.1 482905678 3269084..3270340 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; nucleoside permease NupG 3270340 1171376003186 STU288_15755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoside permease NupG YP_007904238.1 3269084 D 1171376 CDS YP_007904239.1 482905679 complement(3270402..3272537) 1 NC_021151.1 COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 3272537 1171376003187 STU288_15760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ornithine decarboxylase YP_007904239.1 3270402 R 1171376 CDS YP_007904240.1 482905680 3272810..3272923 1 NC_021151.1 hypothetical protein 3272923 1171376003188 STU288_15765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904240.1 3272810 D 1171376 CDS YP_007904241.1 482905681 3272962..3273669 1 NC_021151.1 COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 3273669 1171376003189 STU288_15770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904241.1 3272962 D 1171376 CDS YP_007904242.1 482905682 complement(3274009..3274389) 1 NC_021151.1 COG0346 Lactoylglutathione lyase and related lyases; putative lactoylglutathione lyase 3274389 1171376003191 STU288_15775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lactoylglutathione lyase YP_007904242.1 3274009 R 1171376 CDS YP_007904243.1 482905683 complement(3274454..3275776) 1 NC_021151.1 COG0427 Acetyl-CoA hydrolase; 4-hydroxybutyrate CoA-transferase 3275776 1171376003192 STU288_15780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxybutyrate CoA-transferase YP_007904243.1 3274454 R 1171376 CDS YP_007904244.1 482905684 complement(3275804..3276331) 1 NC_021151.1 COG2030 Acyl dehydratase; Protein maoC Phenylacetic acid degradation protein paaZ 3276331 1171376003193 STU288_15785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein maoC Phenylacetic acid degradation protein paaZ YP_007904244.1 3275804 R 1171376 CDS YP_007904245.1 482905685 complement(3276355..3277197) 1 NC_021151.1 COG2301 Citrate lyase beta subunit; putative citrate lyase beta chain 3277197 1171376003194 STU288_15790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative citrate lyase beta chain YP_007904245.1 3276355 R 1171376 CDS YP_007904246.1 482905686 3277289..3278167 1 NC_021151.1 COG0583 Transcriptional regulator; StmR 3278167 1171376003195 STU288_15795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 StmR YP_007904246.1 3277289 D 1171376 CDS YP_007904247.1 482905687 complement(3278215..3279954) 1 NC_021151.1 COG3119 Arylsulfatase A and related enzymes; arylsulfatase 3279954 1171376003196 STU288_15800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arylsulfatase YP_007904247.1 3278215 R 1171376 CDS YP_007904248.1 482905688 complement(3280023..3281207) 1 NC_021151.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); Putative arylsulfatase regulator 3281207 1171376003197 STU288_15805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative arylsulfatase regulator YP_007904248.1 3280023 R 1171376 CDS YP_007904249.1 482905689 3281719..3282402 1 NC_021151.1 COG2771 DNA-binding HTH domain-containing proteins; Monoamine regulon transcriptional regulator 3282402 1171376003198 STU288_15810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Monoamine regulon transcriptional regulator YP_007904249.1 3281719 D 1171376 CDS YP_007904250.1 482905690 complement(3282506..3283063) 1 NC_021151.1 hypothetical protein 3283063 1171376003199 STU288_15815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904250.1 3282506 R 1171376 CDS YP_007904251.1 482905691 complement(3283041..3284540) 1 NC_021151.1 COG0531 Amino acid transporters; Y+L amino acid transporter 2 y(+)L-type amino acid transporter 2 3284540 1171376003200 STU288_15820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Y+L amino acid transporter 2 y(+)L-type amino acid transporter 2 YP_007904251.1 3283041 R 1171376 CDS YP_007904252.1 482905692 complement(3284533..3284676) 1 NC_021151.1 COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein 3284676 1171376003201 STU288_15825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904252.1 3284533 R 1171376 CDS YP_007904253.1 482905693 complement(3284749..3285123) 1 NC_021151.1 COG3450 Predicted enzyme of the cupin superfamily; hypothetical protein 3285123 1171376003202 STU288_15830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904253.1 3284749 R 1171376 CDS YP_007904254.1 482905694 complement(3285138..3286439) 1 NC_021151.1 COG0665 Glycine/D-amino acid oxidases (deaminating); FAD dependent oxidoreductase 3286439 1171376003203 STU288_15835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FAD dependent oxidoreductase YP_007904254.1 3285138 R 1171376 CDS YP_007904255.1 482905695 3286601..3288085 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; Aldehyde dehydrogenase 3288085 1171376003204 STU288_15840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Aldehyde dehydrogenase YP_007904255.1 3286601 D 1171376 CDS YP_007904256.1 482905696 complement(3288221..3288430) 1 NC_021151.1 DNA replication/recombination/repair protein 3288430 iraD 1171376003205 iraD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA replication/recombination/repair protein YP_007904256.1 3288221 R 1171376 CDS YP_007904257.1 482905697 complement(3288601..3289086) 1 NC_021151.1 COG3157 Hemolysin-coregulated protein (uncharacterized); hypothetical protein 3289086 1171376003206 STU288_15850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904257.1 3288601 R 1171376 CDS YP_007904258.1 482905698 3289085..3289240 1 NC_021151.1 hypothetical protein 3289240 1171376003207 STU288_15855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904258.1 3289085 D 1171376 CDS YP_007904259.1 482905699 complement(3289812..3290735) 1 NC_021151.1 COG0726 Predicted xylanase/chitin deacetylase; putative xylanase/chitin deacetylase 3290735 1171376003208 STU288_15860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative xylanase/chitin deacetylase YP_007904259.1 3289812 R 1171376 CDS YP_007904260.1 482905700 complement(3290774..3291652) 1 NC_021151.1 COG0388 Predicted amidohydrolase; hydrolase 3291652 1171376003209 STU288_15865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007904260.1 3290774 R 1171376 CDS YP_007904261.1 482905701 complement(3292048..3293352) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; hexuronate transporter ExuT 3293352 1171376003210 STU288_15870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hexuronate transporter ExuT YP_007904261.1 3292048 R 1171376 CDS YP_007904262.1 482905702 3293757..3294941 1 NC_021151.1 COG1312 D-mannonate dehydratase; mannonate dehydratase 3294941 1171376003211 STU288_15875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannonate dehydratase YP_007904262.1 3293757 D 1171376 CDS YP_007904263.1 482905703 3295052..3296524 1 NC_021151.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 3296524 1171376003212 STU288_15880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-mannonate oxidoreductase YP_007904263.1 3295052 D 1171376 CDS YP_007904264.1 482905704 3296536..3297948 1 NC_021151.1 COG1904 Glucuronate isomerase; glucuronate isomerase 3297948 1171376003213 STU288_15885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucuronate isomerase YP_007904264.1 3296536 D 1171376 CDS YP_007904265.1 482905705 complement(3298248..3299306) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein 3299306 1171376003214 STU288_15890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Methyl-accepting chemotaxis protein YP_007904265.1 3298248 R 1171376 CDS YP_007904266.1 482905706 complement(3299976..3301832) 1 NC_021151.1 COG0754 Glutathionylspermidine synthase; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3301832 1171376003215 STU288_15895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_007904266.1 3299976 R 1171376 CDS YP_007904267.1 482905707 3302059..3302925 1 NC_021151.1 COG0625 Glutathione S-transferase; S-transferase 3302925 1171376003216 STU288_15900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 S-transferase YP_007904267.1 3302059 D 1171376 CDS YP_007904268.1 482905708 complement(3302993..3303703) 1 NC_021151.1 COG0725 ABC-type molybdate transport system, periplasmic component; molybdate ABC transporter periplasmic molybdate-binding protein 3303703 1171376003217 STU288_15905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdate ABC transporter periplasmic molybdate-binding protein YP_007904268.1 3302993 R 1171376 CDS YP_007904269.1 482905709 complement(3303703..3304755) 1 NC_021151.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; Ferrichrome-binding periplasmic protein 3304755 1171376003218 STU288_15910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Ferrichrome-binding periplasmic protein YP_007904269.1 3303703 R 1171376 CDS YP_007904270.1 482905710 complement(3304831..3305079) 1 NC_021151.1 COG0298 Hydrogenase maturation factor; hydrogenase 2 accessory protein HypG 3305079 1171376003219 STU288_15915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 accessory protein HypG YP_007904270.1 3304831 R 1171376 CDS YP_007904271.1 482905711 complement(3305107..3305448) 1 NC_021151.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HybF 3305448 1171376003220 STU288_15920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase nickel incorporation protein HybF YP_007904271.1 3305107 R 1171376 CDS YP_007904272.1 482905712 complement(3305441..3305929) 1 NC_021151.1 hydrogenase 2-specific chaperone 3305929 1171376003221 STU288_15925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2-specific chaperone YP_007904272.1 3305441 R 1171376 CDS YP_007904273.1 482905713 complement(3305922..3306416) 1 NC_021151.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 2 maturation endopeptidase 3306416 hybD 1171376003222 hybD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 maturation endopeptidase YP_007904273.1 3305922 R 1171376 CDS YP_007904274.1 482905714 complement(3306416..3308119) 1 NC_021151.1 COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 2 large subunit 3308119 1171376003223 STU288_15935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 large subunit YP_007904274.1 3306416 R 1171376 CDS YP_007904275.1 482905715 complement(3308116..3309294) 1 NC_021151.1 COG5557 Polysulphide reductase; hydrogenase 2 b cytochrome subunit 3309294 1171376003224 STU288_15940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 b cytochrome subunit YP_007904275.1 3308116 R 1171376 CDS YP_007904276.1 482905716 complement(3309284..3310270) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; hydrogenase 2 protein HybA 3310270 1171376003225 STU288_15945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 protein HybA YP_007904276.1 3309284 R 1171376 CDS YP_007904277.1 482905717 complement(3310273..3311391) 1 NC_021151.1 COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 2 small subunit 3311391 1171376003226 STU288_15950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrogenase 2 small subunit YP_007904277.1 3310273 R 1171376 CDS YP_007904278.1 482905718 complement(3311581..3311868) 1 NC_021151.1 hypothetical protein 3311868 1171376003227 STU288_15955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904278.1 3311581 R 1171376 CDS YP_007904279.1 482905719 complement(3311953..3313596) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3313596 1171376003228 STU288_15960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-accepting chemotaxis sensory transducer YP_007904279.1 3311953 R 1171376 CDS YP_007904280.1 482905720 complement(3313903..3314397) 1 NC_021151.1 COG2862 Predicted membrane protein; hypothetical protein 3314397 1171376003229 STU288_15965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904280.1 3313903 R 1171376 CDS YP_007904281.1 482905721 complement(3314677..3315180) 1 NC_021151.1 hypothetical protein 3315180 1171376003230 STU288_15970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904281.1 3314677 R 1171376 CDS YP_007904282.1 482905722 3315284..3315694 1 NC_021151.1 hypothetical protein 3315694 1171376003231 STU288_15975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904282.1 3315284 D 1171376 CDS YP_007904283.1 482905723 3315681..3316085 1 NC_021151.1 hypothetical protein 3316085 1171376003232 STU288_15980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904283.1 3315681 D 1171376 CDS YP_007904284.1 482905724 3316209..3317093 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 3317093 1171376003233 STU288_15985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007904284.1 3316209 D 1171376 CDS YP_007904285.1 482905725 complement(3317206..3317631) 1 NC_021151.1 COG0848 Biopolymer transport protein; biopolymer transport protein ExbD 3317631 1171376003234 STU288_15990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biopolymer transport protein ExbD YP_007904285.1 3317206 R 1171376 CDS YP_007904286.1 482905726 complement(3317638..3318372) 1 NC_021151.1 COG0811 Biopolymer transport proteins; biopolymer transport protein ExbB 3318372 1171376003235 STU288_15995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biopolymer transport protein ExbB YP_007904286.1 3317638 R 1171376 CDS YP_007904287.1 482905727 complement(3318365..3318514) 1 NC_021151.1 putative inner membrane protein 3318514 1171376003236 STU288_16000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904287.1 3318365 R 1171376 CDS YP_007904288.1 482905728 3318624..3319811 1 NC_021151.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase 3319811 1171376003237 STU288_16005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cystathionine beta-lyase YP_007904288.1 3318624 D 1171376 CDS YP_007904289.1 482905729 3319951..3320610 1 NC_021151.1 COG0586 Uncharacterized membrane-associated protein; DedA-family integral membrane protein 3320610 1171376003238 STU288_16010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DedA-family integral membrane protein YP_007904289.1 3319951 D 1171376 CDS YP_007904290.1 482905730 complement(3320674..3321591) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 3321591 1171376003239 STU288_16015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AraC family transcriptional regulator YP_007904290.1 3320674 R 1171376 CDS YP_007904291.1 482905731 3321766..3322929 1 NC_021151.1 COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; aldehyde reductase 3322929 1171376003240 STU288_16020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldehyde reductase YP_007904291.1 3321766 D 1171376 CDS YP_007904292.1 482905732 3323035..3323862 1 NC_021151.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase A 3323862 dkgA 1171376003241 dkgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,5-diketo-D-gluconate reductase A YP_007904292.1 3323035 D 1171376 CDS YP_007904293.1 482905733 3324028..3325512 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; putative cation transporter 3325512 1171376003242 STU288_16030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cation transporter YP_007904293.1 3324028 D 1171376 CDS YP_007904294.1 482905734 3325557..3326012 1 NC_021151.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad 3326012 1171376003243 STU288_16035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 histidine triad YP_007904294.1 3325557 D 1171376 CDS YP_007904295.1 482905735 complement(3326170..3326364) 1 NC_021151.1 hypothetical protein 3326364 1171376003244 STU288_16040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904295.1 3326170 R 1171376 CDS YP_007904296.1 482905736 complement(3326567..3328738) 1 NC_021151.1 COG1032 Fe-S oxidoreductase; hypothetical protein 3328738 1171376003245 STU288_16045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904296.1 3326567 R 1171376 CDS YP_007904297.1 482905737 3329226..3330209 1 NC_021151.1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; trap dicarboxylate transporter subunit DctP 3330209 1171376003246 STU288_16050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trap dicarboxylate transporter subunit DctP YP_007904297.1 3329226 D 1171376 CDS YP_007904298.1 482905738 3330251..3330733 1 NC_021151.1 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; tripartite ATP-independent periplasmic 3330733 1171376003247 STU288_16055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tripartite ATP-independent periplasmic YP_007904298.1 3330251 D 1171376 CDS YP_007904299.1 482905739 3330744..3332051 1 NC_021151.1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; putative transport protein 3332051 1171376003248 STU288_16060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007904299.1 3330744 D 1171376 CDS YP_007904300.1 482905740 complement(3332096..3333508) 1 NC_021151.1 COG2132 Putative multicopper oxidases; FtsI repressor 3333508 1171376003249 STU288_16065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FtsI repressor YP_007904300.1 3332096 R 1171376 CDS YP_007904301.1 482905741 complement(3333582..3334319) 1 NC_021151.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3334319 1171376003250 STU288_16070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_007904301.1 3333582 R 1171376 CDS YP_007904302.1 482905742 complement(3334576..3336834) 1 NC_021151.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA topoisomerase IV subunit A 3336834 1171376003251 STU288_16075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA topoisomerase IV subunit A YP_007904302.1 3334576 R 1171376 CDS YP_007904303.1 482905743 complement(3336945..3337811) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative regulatory protein 3337811 1171376003252 STU288_16080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007904303.1 3336945 R 1171376 CDS YP_007904304.1 482905744 complement(3337883..3338275) 1 NC_021151.1 COG3111 Uncharacterized conserved protein; Protein ygiW Flags: Precursor 3338275 1171376003253 STU288_16085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein ygiW Flags: Precursor YP_007904304.1 3337883 R 1171376 CDS YP_007904305.1 482905745 3338427..3339086 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator QseB 3339086 1171376003254 STU288_16090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator QseB YP_007904305.1 3338427 D 1171376 CDS YP_007904306.1 482905746 3339083..3340432 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensor protein QseC 3340432 1171376003255 STU288_16095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein QseC YP_007904306.1 3339083 D 1171376 CDS YP_007904307.1 482905747 3340539..3341120 1 NC_021151.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NADPH quinone reductase MdaB 3341120 1171376003256 STU288_16100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADPH quinone reductase MdaB YP_007904307.1 3340539 D 1171376 CDS YP_007904308.1 482905748 3341152..3341466 1 NC_021151.1 COG1359 Uncharacterized conserved protein; quinol monooxygenase 3341466 1171376003257 STU288_16105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinol monooxygenase YP_007904308.1 3341152 D 1171376 CDS YP_007904309.1 482905749 complement(3341591..3343483) 1 NC_021151.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA topoisomerase IV subunit B 3343483 1171376003258 STU288_16110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA topoisomerase IV subunit B YP_007904309.1 3341591 R 1171376 CDS YP_007904310.1 482905750 complement(3343511..3344092) 1 NC_021151.1 COG3150 Predicted esterase; esterase YqiA 3344092 1171376003259 STU288_16115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 esterase YqiA YP_007904310.1 3343511 R 1171376 CDS YP_007904311.1 482905751 complement(3344092..3344919) 1 NC_021151.1 COG1409 Predicted phosphohydrolases; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3344919 1171376003260 STU288_16120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_007904311.1 3344092 R 1171376 CDS YP_007904312.1 482905752 complement(3344944..3345366) 1 NC_021151.1 COG3151 Uncharacterized protein conserved in bacteria; dehydrogenase 3345366 1171376003261 STU288_16125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dehydrogenase YP_007904312.1 3344944 R 1171376 CDS YP_007904313.1 482905753 complement(3345363..3345995) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase NudF 3345995 nudF 1171376003262 nudF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ADP-ribose pyrophosphatase NudF YP_007904313.1 3345363 R 1171376 CDS YP_007904314.1 482905754 3346202..3347671 1 NC_021151.1 COG1538 Outer membrane protein; outer membrane channel protein 3347671 tolC 1171376003263 tolC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane channel protein YP_007904314.1 3346202 D 1171376 CDS YP_007904315.1 482905755 3347884..3348555 1 NC_021151.1 COG5463 Predicted integral membrane protein; hypothetical protein 3348555 1171376003264 STU288_16140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904315.1 3347884 D 1171376 CDS YP_007904316.1 482905756 3348561..3349724 1 NC_021151.1 COG0754 Glutathionylspermidine synthase; glutathionylspermidine synthase 3349724 1171376003265 STU288_16145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathionylspermidine synthase YP_007904316.1 3348561 D 1171376 CDS YP_007904317.1 482905757 complement(3349786..3350574) 1 NC_021151.1 COG3384 Uncharacterized conserved protein; LigB family dioxygenase 3350574 1171376003266 STU288_16150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LigB family dioxygenase YP_007904317.1 3349786 R 1171376 CDS YP_007904318.1 482905758 3350715..3351488 1 NC_021151.1 COG0428 Predicted divalent heavy-metal cations transporter; zinc transporter ZupT 3351488 1171376003267 STU288_16155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc transporter ZupT YP_007904318.1 3350715 D 1171376 CDS YP_007904319.1 482905759 complement(3351555..3351731) 1 NC_021151.1 hypothetical protein 3351731 1171376003268 STU288_16160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904319.1 3351555 R 1171376 CDS YP_007904320.1 482905760 3352131..3353096 1 NC_021151.1 putative arylsulfate sulfotransferase 3353096 1171376003269 STU288_16165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative arylsulfate sulfotransferase YP_007904320.1 3352131 D 1171376 CDS YP_007904321.1 482905761 3353132..3353926 1 NC_021151.1 arylsulfate sulfotransferase 3353926 1171376003270 STU288_16170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arylsulfate sulfotransferase YP_007904321.1 3353132 D 1171376 CDS YP_007904322.1 482905762 3353946..3354617 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; disulfide isomerase 3354617 1171376003271 STU288_16175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 disulfide isomerase YP_007904322.1 3353946 D 1171376 CDS YP_007904323.1 482905763 3354632..3355309 1 NC_021151.1 COG1495 Disulfide bond formation protein DsbB; disulfide oxidoreductase 3355309 1171376003272 STU288_16180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 disulfide oxidoreductase YP_007904323.1 3354632 D 1171376 CDS YP_007904324.1 482905764 3355412..3355513 1 NC_021151.1 hypothetical protein 3355513 1171376003273 STU288_16185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904324.1 3355412 D 1171376 CDS YP_007904325.1 482905765 complement(3355480..3356133) 1 NC_021151.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3356133 ribB 1171376003274 ribB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_007904325.1 3355480 R 1171376 CDS YP_007904326.1 482905766 3356570..3356869 1 NC_021151.1 COG2960 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3356869 1171376003275 STU288_16195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904326.1 3356570 D 1171376 CDS YP_007904327.1 482905767 complement(3356943..3357152) 1 NC_021151.1 glycogen synthesis protein GlgS 3357152 1171376003276 STU288_16200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycogen synthesis protein GlgS YP_007904327.1 3356943 R 1171376 CDS YP_007904328.1 482905768 3357410..3358030 1 NC_021151.1 Inner membrane protein yqiJ 3358030 1171376003277 STU288_16205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yqiJ YP_007904328.1 3357410 D 1171376 CDS YP_007904329.1 482905769 3358049..3359728 1 NC_021151.1 COG2268 Uncharacterized protein conserved in bacteria; Inner membrane protein yqiK 3359728 1171376003278 STU288_16210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yqiK YP_007904329.1 3358049 D 1171376 CDS YP_007904330.1 482905770 complement(3360188..3361621) 1 NC_021151.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3361621 1171376003279 STU288_16215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_007904330.1 3360188 R 1171376 CDS YP_007904331.1 482905771 complement(3361669..3364512) 1 NC_021151.1 COG1391 Glutamine synthetase adenylyltransferase; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3364512 1171376003280 STU288_16220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_007904331.1 3361669 R 1171376 CDS YP_007904332.1 482905772 complement(3364630..3365931) 1 NC_021151.1 COG3025 Uncharacterized conserved protein; adenylate cyclase 3365931 1171376003281 STU288_16225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylate cyclase YP_007904332.1 3364630 R 1171376 CDS YP_007904333.1 482905773 3366173..3366787 1 NC_021151.1 COG3103 SH3 domain protein; hypothetical protein 3366787 1171376003282 STU288_16230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904333.1 3366173 D 1171376 CDS YP_007904334.1 482905774 3366850..3368091 1 NC_021151.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3368091 cca 1171376003283 cca Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_007904334.1 3366850 D 1171376 CDS YP_007904335.1 482905775 complement(3368196..3369017) 1 NC_021151.1 COG1968 Uncharacterized bacitracin resistance protein; undecaprenyl pyrophosphate phosphatase 3369017 1171376003284 STU288_16240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl pyrophosphate phosphatase YP_007904335.1 3368196 R 1171376 CDS YP_007904336.1 482905776 complement(3369115..3369474) 1 NC_021151.1 COG1539 Dihydroneopterin aldolase; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3369474 folB 1171376003285 folB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_007904336.1 3369115 R 1171376 CDS YP_007904337.1 482905777 3369581..3370192 1 NC_021151.1 COG0344 Predicted membrane protein; glycerol-3-phosphate acyltransferase PlsY 3370192 1171376003286 STU288_16250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate acyltransferase PlsY YP_007904337.1 3369581 D 1171376 CDS YP_007904338.1 482905778 complement(3370443..3371456) 1 NC_021151.1 COG0533 Metal-dependent proteases with possible chaperone activity; UGMP family protein 3371456 1171376003287 STU288_16255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UGMP family protein YP_007904338.1 3370443 R 1171376 CDS YP_007904339.1 482905779 3371684..3371899 1 NC_021151.1 COG0828 Ribosomal protein S21; SSU ribosomal protein S21P 3371899 1171376003288 STU288_16260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SSU ribosomal protein S21P YP_007904339.1 3371684 D 1171376 CDS YP_007904340.1 482905780 3372135..3373880 1 NC_021151.1 COG0358 DNA primase (bacterial type); DNA primase 3373880 dnaG 1171376003289 dnaG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA primase YP_007904340.1 3372135 D 1171376 CDS YP_007904341.1 482905781 3374030..3375877 1 NC_021151.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD 3375877 1171376003290 STU288_16270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase sigma factor RpoD YP_007904341.1 3374030 D 1171376 CDS YP_007904342.1 482905782 complement(3376001..3376507) 1 NC_021151.1 COG3663 G:T/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase 3376507 1171376003291 STU288_16275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 G/U mismatch-specific DNA glycosylase YP_007904342.1 3376001 R 1171376 CDS YP_007904343.1 482905783 complement(3376788..3377555) 1 NC_021151.1 COG2375 Siderophore-interacting protein; siderophore-interacting protein 3377555 1171376003293 STU288_16280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 siderophore-interacting protein YP_007904343.1 3376788 R 1171376 CDS YP_007904344.1 482905784 3377790..3378434 1 NC_021151.1 COG1695 Predicted transcriptional regulators; transcriptional regulator 3378434 1171376003294 STU288_16285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904344.1 3377790 D 1171376 CDS YP_007904345.1 482905785 complement(3378431..3379996) 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) 3379996 1171376003295 STU288_16290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) YP_007904345.1 3378431 R 1171376 CDS YP_007904346.1 482905786 complement(3380384..3381904) 1 NC_021151.1 COG2202 FOG: PAS/PAC domain; aerotaxis receptor 3381904 1171376003296 STU288_16295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aerotaxis receptor YP_007904346.1 3380384 R 1171376 CDS YP_007904347.1 482905787 3382307..3383713 1 NC_021151.1 COG4992 Ornithine/acetylornithine aminotransferase; putrescine--2-oxoglutarate aminotransferase 3383713 1171376003297 STU288_16300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putrescine--2-oxoglutarate aminotransferase YP_007904347.1 3382307 D 1171376 CDS YP_007904348.1 482905788 3383884..3385902 1 NC_021151.1 COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; 2,4-dienoyl-CoA reductase 3385902 fadH 1171376003298 fadH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,4-dienoyl-CoA reductase YP_007904348.1 3383884 D 1171376 CDS YP_007904349.1 482905789 complement(3385983..3387119) 1 NC_021151.1 COG2813 16S RNA G1207 methylase RsmC; SAM-dependent 23S ribosomal RNA mG1835 methyltransferase 3387119 1171376003299 STU288_16310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase YP_007904349.1 3385983 R 1171376 CDS YP_007904350.1 482905790 3387205..3387702 1 NC_021151.1 COG1451 Predicted metal-dependent hydrolase; hypothetical protein 3387702 1171376003300 STU288_16315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904350.1 3387205 D 1171376 CDS YP_007904351.1 482905791 3387854..3388546 1 NC_021151.1 COG2949 Uncharacterized membrane protein; putative integral membrane protein 3388546 1171376003301 STU288_16320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative integral membrane protein YP_007904351.1 3387854 D 1171376 CDS YP_007904352.1 482905792 3388635..3389633 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 3389633 1171376003302 STU288_16325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007904352.1 3388635 D 1171376 CDS YP_007904353.1 482905793 3389905..3390873 1 NC_021151.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; Inner membrane protein alx 3390873 1171376003303 STU288_16330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein alx YP_007904353.1 3389905 D 1171376 CDS YP_007904354.1 482905794 3391127..3392371 1 NC_021151.1 COG3633 Na+/serine symporter; serine/threonine transporter SstT 3392371 1171376003304 STU288_16335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine/threonine transporter SstT YP_007904354.1 3391127 D 1171376 CDS YP_007904355.1 482905795 3392821..3393483 1 NC_021151.1 COG0586 Uncharacterized membrane-associated protein; DedA family inner membrane protein YqjA 3393483 1171376003305 STU288_16340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DedA family inner membrane protein YqjA YP_007904355.1 3392821 D 1171376 CDS YP_007904356.1 482905796 3393487..3393870 1 NC_021151.1 EnvZ/OmpR regulon moderator 3393870 1171376003306 STU288_16345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 EnvZ/OmpR regulon moderator YP_007904356.1 3393487 D 1171376 CDS YP_007904357.1 482905797 3394015..3394383 1 NC_021151.1 Protein yqjC Flags: Precursor 3394383 1171376003307 STU288_16350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein yqjC Flags: Precursor YP_007904357.1 3394015 D 1171376 CDS YP_007904358.1 482905798 3394425..3394730 1 NC_021151.1 hypothetical protein 3394730 1171376003308 STU288_16355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904358.1 3394425 D 1171376 CDS YP_007904359.1 482905799 3394733..3395131 1 NC_021151.1 Inner membrane protein yqjE 3395131 1171376003309 STU288_16360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yqjE YP_007904359.1 3394733 D 1171376 CDS YP_007904360.1 482905800 3395128..3395427 1 NC_021151.1 hypothetical protein 3395427 1171376003310 STU288_16365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904360.1 3395128 D 1171376 CDS YP_007904361.1 482905801 3395665..3396057 1 NC_021151.1 COG2259 Predicted membrane protein; hypothetical protein 3396057 1171376003311 STU288_16370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904361.1 3395665 D 1171376 CDS YP_007904362.1 482905802 3396125..3397111 1 NC_021151.1 COG0435 Predicted glutathione S-transferase; glutathione S-transferase 3397111 1171376003312 STU288_16375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione S-transferase YP_007904362.1 3396125 D 1171376 CDS YP_007904363.1 482905803 3397235..3397600 1 NC_021151.1 COG3152 Predicted membrane protein; Inner membrane protein yhaH 3397600 1171376003313 STU288_16380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yhaH YP_007904363.1 3397235 D 1171376 CDS YP_007904364.1 482905804 complement(3397639..3398535) 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 3398535 1171376003314 STU288_16385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007904364.1 3397639 R 1171376 CDS YP_007904365.1 482905805 3398640..3399341 1 NC_021151.1 COG1741 Pirin-related protein; pirin 3399341 1171376003315 STU288_16390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pirin YP_007904365.1 3398640 D 1171376 CDS YP_007904366.1 482905806 3399365..3399529 1 NC_021151.1 putative cytoplasmic protein 3399529 1171376003316 STU288_16395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904366.1 3399365 D 1171376 CDS YP_007904367.1 482905807 complement(3399642..3400952) 1 NC_021151.1 COG3681 Uncharacterized conserved protein; hypothetical protein 3400952 1171376003317 STU288_16400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904367.1 3399642 R 1171376 CDS YP_007904368.1 482905808 complement(3400978..3402309) 1 NC_021151.1 COG0814 Amino acid permeases; inner membrane transport protein YhaO 3402309 1171376003318 STU288_16405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transport protein YhaO YP_007904368.1 3400978 R 1171376 CDS YP_007904369.1 482905809 complement(3402625..3403989) 1 NC_021151.1 COG1760 L-serine deaminase; L-serine dehydratase TdcG 3403989 1171376003319 STU288_16410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-serine dehydratase TdcG YP_007904369.1 3402625 R 1171376 CDS YP_007904370.1 482905810 complement(3404059..3406353) 1 NC_021151.1 COG1882 Pyruvate-formate lyase; keto-acid formate acetyltransferase 3406353 1171376003320 STU288_16415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 keto-acid formate acetyltransferase YP_007904370.1 3404059 R 1171376 CDS YP_007904371.1 482905811 complement(3406387..3407595) 1 NC_021151.1 COG0282 Acetate kinase; propionate/acetate kinase 3407595 1171376003321 STU288_16420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 propionate/acetate kinase YP_007904371.1 3406387 R 1171376 CDS YP_007904372.1 482905812 complement(3407661..3408992) 1 NC_021151.1 COG0814 Amino acid permeases; threonine/serine transporter TdcC 3408992 1171376003322 STU288_16425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine/serine transporter TdcC YP_007904372.1 3407661 R 1171376 CDS YP_007904373.1 482905813 complement(3409013..3410002) 1 NC_021151.1 COG1171 Threonine dehydratase; threonine dehydratase 3410002 1171376003323 STU288_16430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine dehydratase YP_007904373.1 3409013 R 1171376 CDS YP_007904374.1 482905814 complement(3410100..3411038) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator TdcA 3411038 1171376003324 STU288_16435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator TdcA YP_007904374.1 3410100 R 1171376 CDS YP_007904375.1 482905815 complement(3412836..3413981) 1 NC_021151.1 COG1929 Glycerate kinase; glycerate kinase I 3413981 1171376003325 STU288_16440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerate kinase I YP_007904375.1 3412836 R 1171376 CDS YP_007904376.1 482905816 complement(3414079..3414969) 1 NC_021151.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase 3414969 garR 1171376003326 garR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tartronate semialdehyde reductase YP_007904376.1 3414079 R 1171376 CDS YP_007904377.1 482905817 complement(3414995..3415765) 1 NC_021151.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3415765 1171376003327 STU288_16450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_007904377.1 3414995 R 1171376 CDS YP_007904378.1 482905818 3416295..3417866 1 NC_021151.1 COG2721 Altronate dehydratase; galactarate dehydrogenase 3417866 garD 1171376003328 garD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactarate dehydrogenase YP_007904378.1 3416295 D 1171376 CDS YP_007904379.1 482905819 complement(3418106..3419053) 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; carbohydrate kinase 3419053 1171376003329 STU288_16460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbohydrate kinase YP_007904379.1 3418106 R 1171376 CDS YP_007904380.1 482905820 complement(3419064..3419897) 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor 3419897 1171376003330 STU288_16465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor YP_007904380.1 3419064 R 1171376 CDS YP_007904381.1 482905821 3420231..3421085 1 NC_021151.1 COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 3421085 gatY 1171376003331 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tagatose-bisphosphate aldolase YP_007904381.1 3420231 D 1171376 CDS YP_007904382.1 482905822 3421096..3422010 1 NC_021151.1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); putative fructose-1-phosphate kinase 3422010 1171376003332 STU288_16475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative fructose-1-phosphate kinase YP_007904382.1 3421096 D 1171376 CDS YP_007904383.1 482905823 3422037..3423464 1 NC_021151.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunit IIBC 3423464 1171376003333 STU288_16480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose-specific transporter subunit IIBC YP_007904383.1 3422037 D 1171376 CDS YP_007904384.1 482905824 3423451..3424257 1 NC_021151.1 COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; PTS-transport family phosphoryl transfer protein 3424257 1171376003334 STU288_16485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS-transport family phosphoryl transfer protein YP_007904384.1 3423451 D 1171376 CDS YP_007904385.1 482905825 3424455..3425726 1 NC_021151.1 COG4573 Predicted tagatose 6-phosphate kinase; D-tagatose-1,6-bisphosphate aldolase subunit GatZ 3425726 1171376003335 STU288_16490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-tagatose-1,6-bisphosphate aldolase subunit GatZ YP_007904385.1 3424455 D 1171376 CDS YP_007904386.1 482905826 3425741..3426205 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system galactitol-specific transporter subunit IIA 3426205 1171376003336 STU288_16495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system galactitol-specific transporter subunit IIA YP_007904386.1 3425741 D 1171376 CDS YP_007904387.1 482905827 3426236..3426520 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system galactitol-specific transporter subunit IIB 3426520 1171376003337 STU288_16500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system galactitol-specific transporter subunit IIB YP_007904387.1 3426236 D 1171376 CDS YP_007904388.1 482905828 3426524..3427897 1 NC_021151.1 COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC 3427897 gatC 1171376003338 gatC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system galactitol-specific transporter subunit IIC YP_007904388.1 3426524 D 1171376 CDS YP_007904389.1 482905829 3427941..3428984 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; galactitol-1-phosphate dehydrogenase 3428984 1171376003339 STU288_16510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactitol-1-phosphate dehydrogenase YP_007904389.1 3427941 D 1171376 CDS YP_007904390.1 482905830 3429095..3429868 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; galactitol utilization operon repressor 3429868 1171376003340 STU288_16515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactitol utilization operon repressor YP_007904390.1 3429095 D 1171376 CDS YP_007904391.1 482905831 complement(3430026..3430889) 1 NC_021151.1 COG0313 Predicted methyltransferases; SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase 3430889 1171376003341 STU288_16520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase YP_007904391.1 3430026 R 1171376 CDS YP_007904392.1 482905832 3430953..3432995 1 NC_021151.1 COG3107 Putative lipoprotein; LppC family lipoprotein 3432995 1171376003342 STU288_16525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LppC family lipoprotein YP_007904392.1 3430953 D 1171376 CDS YP_007904393.1 482905833 3432953..3433348 1 NC_021151.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 3433348 1171376003343 STU288_16530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904393.1 3432953 D 1171376 CDS YP_007904394.1 482905834 3433370..3433960 1 NC_021151.1 COG0279 Phosphoheptose isomerase; DnaA initiator-associating protein DiaA 3433960 1171376003344 STU288_16535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DnaA initiator-associating protein DiaA YP_007904394.1 3433370 D 1171376 CDS YP_007904395.1 482905835 3433970..3434545 1 NC_021151.1 COG2823 Predicted periplasmic or secreted lipoprotein; outer membrane lipoprotein 3434545 1171376003345 STU288_16540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007904395.1 3433970 D 1171376 CDS YP_007904396.1 482905836 complement(3434612..3435247) 1 NC_021151.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; putative nucleoside-diphosphate-sugar epimerase 3435247 1171376003346 STU288_16545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative nucleoside-diphosphate-sugar epimerase YP_007904396.1 3434612 R 1171376 CDS YP_007904397.1 482905837 3435378..3435896 1 NC_021151.1 COG0693 Putative intracellular protease/amidase; General stress protein 18 GSP18 3435896 1171376003347 STU288_16550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 General stress protein 18 GSP18 YP_007904397.1 3435378 D 1171376 CDS YP_007904398.1 482905838 complement(3435876..3436319) 1 NC_021151.1 COG3787 Uncharacterized protein conserved in bacteria; hypothetical protein 3436319 1171376003348 STU288_16555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904398.1 3435876 R 1171376 CDS YP_007904399.1 482905839 3436372..3436674 1 NC_021151.1 COG2827 Predicted endonuclease containing a URI domain; GIY-YIG nuclease superfamily protein 3436674 1171376003349 STU288_16560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GIY-YIG nuclease superfamily protein YP_007904399.1 3436372 D 1171376 CDS YP_007904400.1 482905840 complement(3436661..3437164) 1 NC_021151.1 COG3153 Predicted acetyltransferase; putative acetyltransferase 3437164 1171376003350 STU288_16565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acetyltransferase YP_007904400.1 3436661 R 1171376 CDS YP_007904401.1 482905841 complement(3437158..3437682) 1 NC_021151.1 COG3154 Putative lipid carrier protein; hypothetical protein 3437682 1171376003351 STU288_16570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904401.1 3437158 R 1171376 CDS YP_007904402.1 482905842 3437899..3438894 1 NC_021151.1 COG0826 Collagenase and related proteases; putative collagenase 3438894 1171376003352 STU288_16575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative collagenase YP_007904402.1 3437899 D 1171376 CDS YP_007904403.1 482905843 3438903..3439781 1 NC_021151.1 COG0826 Collagenase and related proteases; protease 3439781 1171376003353 STU288_16580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease YP_007904403.1 3438903 D 1171376 CDS YP_007904404.1 482905844 3439959..3440966 1 NC_021151.1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; hypothetical protein 3440966 1171376003354 STU288_16585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904404.1 3439959 D 1171376 CDS YP_007904405.1 482905845 complement(3440944..3441663) 1 NC_021151.1 COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein 3441663 1171376003355 STU288_16590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904405.1 3440944 R 1171376 CDS YP_007904406.1 482905846 3441822..3442352 1 NC_021151.1 hypothetical protein 3442352 1171376003356 STU288_16595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904406.1 3441822 D 1171376 CDS YP_007904407.1 482905847 complement(3442413..3443657) 1 NC_021151.1 COG0814 Amino acid permeases; tryptophan permease 3443657 1171376003357 STU288_16600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tryptophan permease YP_007904407.1 3442413 R 1171376 CDS YP_007904408.1 482905848 complement(3443811..3445700) 1 NC_021151.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DeaD 3445700 1171376003358 STU288_16605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase DeaD YP_007904408.1 3443811 R 1171376 CDS YP_007904409.1 482905849 complement(3445879..3446763) 1 NC_021151.1 COG4785 Lipoprotein NlpI, contains TPR repeats; lipoprotein NlpI 3446763 1171376003359 STU288_16610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein NlpI YP_007904409.1 3445879 R 1171376 CDS YP_007904410.1 482905850 complement(3446873..3449008) 1 NC_021151.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 3449008 1171376003360 STU288_16615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polynucleotide phosphorylase/polyadenylase YP_007904410.1 3446873 R 1171376 CDS YP_007904411.1 482905851 complement(3449250..3449519) 1 NC_021151.1 COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 3449519 rpsO 1171376003361 rpsO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S15 YP_007904411.1 3449250 R 1171376 CDS YP_007904412.1 482905852 complement(3449670..3450614) 1 NC_021151.1 COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B 3450614 truB 1171376003362 truB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA pseudouridine synthase B YP_007904412.1 3449670 R 1171376 CDS YP_007904413.1 482905853 complement(3450614..3451015) 1 NC_021151.1 COG0858 Ribosome-binding factor A; ribosome-binding factor A 3451015 rbfA 1171376003363 rbfA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome-binding factor A YP_007904413.1 3450614 R 1171376 CDS YP_007904414.1 482905854 complement(3451236..3453914) 1 NC_021151.1 COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 3453914 infB 1171376003364 infB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 translation initiation factor IF-2 YP_007904414.1 3451236 R 1171376 CDS YP_007904415.1 482905855 complement(3453939..3455441) 1 NC_021151.1 COG0195 Transcription elongation factor; transcription elongation factor NusA 3455441 nusA 1171376003365 nusA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription elongation factor NusA YP_007904415.1 3453939 R 1171376 CDS YP_007904416.1 482905856 complement(3455469..3455921) 1 NC_021151.1 COG0779 Uncharacterized protein conserved in bacteria; ribosome maturation protein RimP 3455921 1171376003366 STU288_16645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome maturation protein RimP YP_007904416.1 3455469 R 1171376 CDS YP_007904417.1 482905857 3456549..3457892 1 NC_021151.1 COG0137 Argininosuccinate synthase; argininosuccinate synthase 3457892 1171376003368 STU288_16650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 argininosuccinate synthase YP_007904417.1 3456549 D 1171376 CDS YP_007904418.1 482905858 complement(3457978..3459042) 1 NC_021151.1 COG3878 Uncharacterized protein conserved in bacteria; hypothetical protein 3459042 1171376003369 STU288_16655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904418.1 3457978 R 1171376 CDS YP_007904419.1 482905859 complement(3459478..3459810) 1 NC_021151.1 COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 3459810 secG 1171376003371 secG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecG YP_007904419.1 3459478 R 1171376 CDS YP_007904420.1 482905860 complement(3460033..3461370) 1 NC_021151.1 COG1109 Phosphomannomutase; phosphoglucosamine mutase 3461370 glmM 1171376003372 glmM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglucosamine mutase YP_007904420.1 3460033 R 1171376 CDS YP_007904421.1 482905861 complement(3461363..3462211) 1 NC_021151.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 3462211 folP 1171376003373 folP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropteroate synthase YP_007904421.1 3461363 R 1171376 CDS YP_007904422.1 482905862 complement(3462316..3464250) 1 NC_021151.1 COG0465 ATP-dependent Zn proteases; ATP-dependent metalloprotease 3464250 hflB 1171376003374 hflB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent metalloprotease YP_007904422.1 3462316 R 1171376 CDS YP_007904423.1 482905863 complement(3464354..3464980) 1 NC_021151.1 COG0293 23S rRNA methylase; 23S rRNA methyltransferase J 3464980 rrmJ 1171376003375 rrmJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA methyltransferase J YP_007904423.1 3464354 R 1171376 CDS YP_007904424.1 482905864 3465107..3465400 1 NC_021151.1 COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; RNA-binding protein YhbY 3465400 1171376003376 STU288_16685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA-binding protein YhbY YP_007904424.1 3465107 D 1171376 CDS YP_007904425.1 482905865 complement(3465556..3466032) 1 NC_021151.1 COG0782 Transcription elongation factor; transcription elongation factor GreA 3466032 greA 1171376003377 greA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription elongation factor GreA YP_007904425.1 3465556 R 1171376 CDS YP_007904426.1 482905866 complement(3466086..3466187) 1 NC_021151.1 hypothetical protein 3466187 1171376003378 STU288_16695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904426.1 3466086 R 1171376 CDS YP_007904427.1 482905867 3466280..3467713 1 NC_021151.1 COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase/endopeptidase 3467713 1171376003379 STU288_16700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanyl-D-alanine carboxypeptidase/endopeptidase YP_007904427.1 3466280 D 1171376 CDS YP_007904428.1 482905868 3467723..3467848 1 NC_021151.1 hypothetical protein 3467848 1171376003380 STU288_16705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904428.1 3467723 D 1171376 CDS YP_007904429.1 482905869 complement(3467845..3469017) 1 NC_021151.1 COG0536 Predicted GTPase; GTPase CgtA 3469017 obgE 1171376003381 obgE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTPase CgtA YP_007904429.1 3467845 R 1171376 CDS YP_007904430.1 482905870 complement(3469033..3469374) 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 3469374 1171376003382 STU288_16715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904430.1 3469033 R 1171376 CDS YP_007904431.1 482905871 complement(3469398..3469997) 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transport protein 3469997 1171376003383 STU288_16720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transport protein YP_007904431.1 3469398 R 1171376 CDS YP_007904432.1 482905872 complement(3470127..3470384) 1 NC_021151.1 COG0211 Ribosomal protein L27; 50S ribosomal protein L27 3470384 rpmA 1171376003384 rpmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L27 YP_007904432.1 3470127 R 1171376 CDS YP_007904433.1 482905873 complement(3470404..3470715) 1 NC_021151.1 COG0261 Ribosomal protein L21; 50S ribosomal protein L21 3470715 rplU 1171376003385 rplU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L21 YP_007904433.1 3470404 R 1171376 CDS YP_007904434.1 482905874 3470973..3471944 1 NC_021151.1 COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl diphosphate synthase 3471944 1171376003386 STU288_16735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 octaprenyl diphosphate synthase YP_007904434.1 3470973 D 1171376 CDS YP_007904435.1 482905875 3472176..3472463 1 NC_021151.1 COG3423 Predicted transcriptional regulator; DNA-binding transcriptional regulator Nlp 3472463 1171376003387 STU288_16740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator Nlp YP_007904435.1 3472176 D 1171376 CDS YP_007904436.1 482905876 complement(3472521..3473780) 1 NC_021151.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3473780 1171376003388 STU288_16745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_007904436.1 3472521 R 1171376 CDS YP_007904437.1 482905877 complement(3473834..3474088) 1 NC_021151.1 COG5007 Predicted transcriptional regulator, BolA superfamily; hypothetical protein 3474088 1171376003389 STU288_16750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904437.1 3473834 R 1171376 CDS YP_007904438.1 482905878 complement(3474276..3474572) 1 NC_021151.1 COG3113 Predicted NTP binding protein (contains STAS domain); anti-sigma factor antagonist 3474572 1171376003390 STU288_16755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-sigma factor antagonist YP_007904438.1 3474276 R 1171376 CDS YP_007904439.1 482905879 complement(3474572..3475207) 1 NC_021151.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; ABC transporter periplasmic binding protein MlaC 3475207 1171376003391 STU288_16760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter periplasmic binding protein MlaC YP_007904439.1 3474572 R 1171376 CDS YP_007904440.1 482905880 complement(3475226..3475777) 1 NC_021151.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein 3475777 1171376003392 STU288_16765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904440.1 3475226 R 1171376 CDS YP_007904441.1 482905881 complement(3475782..3476564) 1 NC_021151.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; toluene ABC transporter permease 3476564 1171376003393 STU288_16770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 toluene ABC transporter permease YP_007904441.1 3475782 R 1171376 CDS YP_007904442.1 482905882 complement(3476572..3477384) 1 NC_021151.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein YrbF 3477384 1171376003394 STU288_16775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YrbF YP_007904442.1 3476572 R 1171376 CDS YP_007904443.1 482905883 3477597..3478574 1 NC_021151.1 COG0530 Ca2+/Na+ antiporter; calcium/sodium:proton antiporter 3478574 1171376003395 STU288_16780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 calcium/sodium:proton antiporter YP_007904443.1 3477597 D 1171376 CDS YP_007904444.1 482905884 3478588..3479574 1 NC_021151.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3479574 1171376003396 STU288_16785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-arabinose 5-phosphate isomerase YP_007904444.1 3478588 D 1171376 CDS YP_007904445.1 482905885 3479595..3480161 1 NC_021151.1 COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3480161 1171376003397 STU288_16790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_007904445.1 3479595 D 1171376 CDS YP_007904446.1 482905886 3480158..3480733 1 NC_021151.1 COG3117 Uncharacterized protein conserved in bacteria; lipopolysaccharide exporter periplasmic protein 3480733 1171376003398 STU288_16795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide exporter periplasmic protein YP_007904446.1 3480158 D 1171376 CDS YP_007904447.1 482905887 3480702..3481256 1 NC_021151.1 COG1934 Uncharacterized protein conserved in bacteria; lipopolysaccharide transport periplasmic protein LptA 3481256 1171376003399 STU288_16800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide transport periplasmic protein LptA YP_007904447.1 3480702 D 1171376 CDS YP_007904448.1 482905888 3481263..3481988 1 NC_021151.1 COG1137 ABC-type (unclassified) transport system, ATPase component; lipopolysaccharide ABC transporter ATP-binding protein 3481988 1171376003400 STU288_16805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide ABC transporter ATP-binding protein YP_007904448.1 3481263 D 1171376 CDS YP_007904449.1 482905889 3482036..3483469 1 NC_021151.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 3483469 1171376003401 STU288_16810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase factor sigma-54 YP_007904449.1 3482036 D 1171376 CDS YP_007904450.1 482905890 3483492..3483779 1 NC_021151.1 COG1544 Ribosome-associated protein Y (PSrp-1); ribosome hibernation promoting factor HPF 3483779 1171376003402 STU288_16815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome hibernation promoting factor HPF YP_007904450.1 3483492 D 1171376 CDS YP_007904451.1 482905891 3483897..3484388 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system nitrogen regulatory protein IIA(Ntr) 3484388 1171376003403 STU288_16820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system nitrogen regulatory protein IIA(Ntr) YP_007904451.1 3483897 D 1171376 CDS YP_007904452.1 482905892 3484434..3485288 1 NC_021151.1 COG1660 Predicted P-loop-containing kinase; glmZ(sRNA)-inactivating NTPase 3485288 1171376003404 STU288_16825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glmZ(sRNA)-inactivating NTPase YP_007904452.1 3484434 D 1171376 CDS YP_007904453.1 482905893 3485285..3485557 1 NC_021151.1 COG1925 Phosphotransferase system, HPr-related proteins; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3485557 1171376003405 STU288_16830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_007904453.1 3485285 D 1171376 CDS YP_007904454.1 482905894 3485806..3486438 1 NC_021151.1 hypothetical protein 3486438 1171376003406 STU288_16835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904454.1 3485806 D 1171376 CDS YP_007904455.1 482905895 complement(3486513..3487241) 1 NC_021151.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); monofunctional biosynthetic peptidoglycan transglycosylase 3487241 mtgA 1171376003407 mtgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 monofunctional biosynthetic peptidoglycan transglycosylase YP_007904455.1 3486513 R 1171376 CDS YP_007904456.1 482905896 complement(3487238..3487891) 1 NC_021151.1 COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; isoprenoid biosynthesis protein 3487891 1171376003408 STU288_16845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isoprenoid biosynthesis protein YP_007904456.1 3487238 R 1171376 CDS YP_007904457.1 482905897 complement(3488118..3490454) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; aerobic respiration control sensor protein ArcB 3490454 1171376003409 STU288_16850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aerobic respiration control sensor protein ArcB YP_007904457.1 3488118 R 1171376 CDS YP_007904458.1 482905898 complement(3490548..3491477) 1 NC_021151.1 COG1242 Predicted Fe-S oxidoreductase; Fe-S oxidoreductase 3491477 1171376003410 STU288_16855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Fe-S oxidoreductase YP_007904458.1 3490548 R 1171376 CDS YP_007904459.1 482905899 3492149..3496609 1 NC_021151.1 COG0067 Glutamate synthase domain 1; glutamate synthase subunit alpha 3496609 gltB 1171376003411 gltB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate synthase subunit alpha YP_007904459.1 3492149 D 1171376 CDS YP_007904460.1 482905900 3496619..3498037 1 NC_021151.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; glutamate synthase subunit beta 3498037 gltD 1171376003412 gltD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate synthase subunit beta YP_007904460.1 3496619 D 1171376 CDS YP_007904461.1 482905901 3498244..3499347 1 NC_021151.1 COG4804 Uncharacterized conserved protein; hypothetical protein 3499347 1171376003413 STU288_16870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904461.1 3498244 D 1171376 CDS YP_007904462.1 482905902 3499464..3500717 1 NC_021151.1 COG1457 Purine-cytosine permease and related proteins; cytosine permease 3500717 codB 1171376003414 codB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytosine permease YP_007904462.1 3499464 D 1171376 CDS YP_007904463.1 482905903 3500704..3501984 1 NC_021151.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; cytosine deaminase 3501984 1171376003415 STU288_16880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytosine deaminase YP_007904463.1 3500704 D 1171376 CDS YP_007904464.1 482905904 complement(3502067..3502534) 1 NC_021151.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 3502534 1171376003416 STU288_16885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904464.1 3502067 R 1171376 CDS YP_007904465.1 482905905 complement(3502531..3503406) 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; N-acetylmannosamine kinase 3503406 1171376003417 STU288_16890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmannosamine kinase YP_007904465.1 3502531 R 1171376 CDS YP_007904466.1 482905906 complement(3503403..3504092) 1 NC_021151.1 COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase 3504092 1171376003418 STU288_16895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmannosamine-6-phosphate 2-epimerase YP_007904466.1 3503403 R 1171376 CDS YP_007904467.1 482905907 complement(3504139..3505629) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; sialic acid transporter 3505629 1171376003419 STU288_16900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sialic acid transporter YP_007904467.1 3504139 R 1171376 CDS YP_007904468.1 482905908 complement(3505745..3506638) 1 NC_021151.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; N-acetylneuraminate lyase 3506638 1171376003420 STU288_16905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylneuraminate lyase YP_007904468.1 3505745 R 1171376 CDS YP_007904469.1 482905909 complement(3506773..3507564) 1 NC_021151.1 COG2186 Transcriptional regulators; transcriptional regulator NanR 3507564 1171376003421 STU288_16910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator NanR YP_007904469.1 3506773 R 1171376 CDS YP_007904470.1 482905910 complement(3507673..3508173) 1 NC_021151.1 COG2969 Stringent starvation protein B; ClpXP protease specificity-enhancing factor 3508173 1171376003422 STU288_16915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ClpXP protease specificity-enhancing factor YP_007904470.1 3507673 R 1171376 CDS YP_007904471.1 482905911 complement(3508179..3508817) 1 NC_021151.1 COG0625 Glutathione S-transferase; stringent starvation protein A 3508817 sspA 1171376003423 sspA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 stringent starvation protein A YP_007904471.1 3508179 R 1171376 CDS YP_007904472.1 482905912 complement(3509080..3509832) 1 NC_021151.1 hypothetical protein 3509832 1171376003424 STU288_16925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904472.1 3509080 R 1171376 CDS YP_007904473.1 482905913 complement(3510032..3510424) 1 NC_021151.1 COG0103 Ribosomal protein S9; 30S ribosomal protein S9 3510424 rpsI 1171376003425 rpsI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S9 YP_007904473.1 3510032 R 1171376 CDS YP_007904474.1 482905914 complement(3510440..3510868) 1 NC_021151.1 COG0102 Ribosomal protein L13; 50S ribosomal protein L13 3510868 1171376003426 STU288_16935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L13 YP_007904474.1 3510440 R 1171376 CDS YP_007904475.1 482905915 complement(3511171..3512295) 1 NC_021151.1 COG1485 Predicted ATPase; ATP/GTP-binding protein 3512295 1171376003427 STU288_16940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP/GTP-binding protein YP_007904475.1 3511171 R 1171376 CDS YP_007904476.1 482905916 3512488..3512886 1 NC_021151.1 COG3105 Uncharacterized protein conserved in bacteria; hypothetical protein 3512886 1171376003428 STU288_16945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904476.1 3512488 D 1171376 CDS YP_007904477.1 482905917 3513043..3514410 1 NC_021151.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3514410 1171376003429 STU288_16950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine endoprotease YP_007904477.1 3513043 D 1171376 CDS YP_007904478.1 482905918 3514503..3515573 1 NC_021151.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3515573 1171376003430 STU288_16955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine endoprotease YP_007904478.1 3514503 D 1171376 CDS YP_007904479.1 482905919 complement(3515607..3516338) 1 NC_021151.1 COG1767 Triphosphoribosyl-dephospho-CoA synthetase; hypothetical protein 3516338 1171376003431 STU288_16960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904479.1 3515607 R 1171376 CDS YP_007904480.1 482905920 complement(3516358..3517659) 1 NC_021151.1 COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion pump oxaloacetate decarboxylase beta chain 3517659 1171376003432 STU288_16965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium ion pump oxaloacetate decarboxylase beta chain YP_007904480.1 3516358 R 1171376 CDS YP_007904483.1 482905923 3519408..3519518 1 NC_021151.1 hypothetical protein 3519518 1171376003434 STU288_16980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904483.1 3519408 D 1171376 CDS YP_007904484.1 482905924 complement(3519465..3519719) 1 NC_021151.1 COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 3519719 1171376003435 STU288_16985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxaloacetate decarboxylase subunit gamma YP_007904484.1 3519465 R 1171376 CDS YP_007904485.1 482905925 complement(3519875..3520492) 1 NC_021151.1 COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; L(+)-tartrate dehydratase subunit beta 3520492 1171376003436 STU288_16990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L(+)-tartrate dehydratase subunit beta YP_007904485.1 3519875 R 1171376 CDS YP_007904486.1 482905926 complement(3520492..3521391) 1 NC_021151.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; tartrate dehydratase subunit alpha 3521391 1171376003437 STU288_16995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tartrate dehydratase subunit alpha YP_007904486.1 3520492 R 1171376 CDS YP_007904487.1 482905927 complement(3521424..3522692) 1 NC_021151.1 COG0471 Di- and tricarboxylate transporters; membrane transport protein 3522692 1171376003438 STU288_17000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane transport protein YP_007904487.1 3521424 R 1171376 CDS YP_007904488.1 482905928 complement(3522903..3523568) 1 NC_021151.1 COG1802 Transcriptional regulators; LysR family transcriptional regulator 3523568 1171376003439 STU288_17005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007904488.1 3522903 R 1171376 CDS YP_007904489.1 482905929 complement(3523555..3524184) 1 NC_021151.1 COG1802 Transcriptional regulators; Gluconate operon transcriptional repressor P28 protein 3524184 1171376003440 STU288_17010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gluconate operon transcriptional repressor P28 protein YP_007904489.1 3523555 R 1171376 CDS YP_007904490.1 482905930 complement(3524304..3525242) 1 NC_021151.1 COG0039 Malate/lactate dehydrogenases; malate dehydrogenase 3525242 1171376003441 STU288_17015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 malate dehydrogenase YP_007904490.1 3524304 R 1171376 CDS YP_007904491.1 482905931 3525656..3526126 1 NC_021151.1 COG1438 Arginine repressor; arginine repressor 3526126 1171376003442 STU288_17020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine repressor YP_007904491.1 3525656 D 1171376 CDS YP_007904492.1 482905932 3526239..3526334 1 NC_021151.1 hypothetical protein 3526334 1171376003443 STU288_17025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904492.1 3526239 D 1171376 CDS YP_007904493.1 482905933 3526491..3526754 1 NC_021151.1 Protein ydgH Flags: Precursor 3526754 1171376003444 STU288_17030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein ydgH Flags: Precursor YP_007904493.1 3526491 D 1171376 CDS YP_007904494.1 482905934 3526858..3527124 1 NC_021151.1 Protein ydgH Flags: Precursor 3527124 1171376003445 STU288_17035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein ydgH Flags: Precursor YP_007904494.1 3526858 D 1171376 CDS YP_007904495.1 482905935 complement(3527184..3527456) 1 NC_021151.1 putative barnase inhibitor 3527456 1171376003446 STU288_17040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative barnase inhibitor YP_007904495.1 3527184 R 1171376 CDS YP_007904496.1 482905936 complement(3527628..3529595) 1 NC_021151.1 COG1289 Predicted membrane protein; p-hydroxybenzoic acid efflux subunit AaeB 3529595 1171376003447 STU288_17045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 p-hydroxybenzoic acid efflux subunit AaeB YP_007904496.1 3527628 R 1171376 CDS YP_007904497.1 482905937 complement(3529601..3530533) 1 NC_021151.1 COG1566 Multidrug resistance efflux pump; p-hydroxybenzoic acid efflux subunit AaeA 3530533 1171376003448 STU288_17050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 p-hydroxybenzoic acid efflux subunit AaeA YP_007904497.1 3529601 R 1171376 CDS YP_007904498.1 482905938 complement(3530541..3530744) 1 NC_021151.1 efflux system membrane protein 3530744 1171376003449 STU288_17055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 efflux system membrane protein YP_007904498.1 3530541 R 1171376 CDS YP_007904499.1 482905939 3530926..3531855 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional regulator 3531855 1171376003450 STU288_17060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904499.1 3530926 D 1171376 CDS YP_007904500.1 482905940 complement(3531978..3533423) 1 NC_021151.1 COG0312 Predicted Zn-dependent proteases and their inactivated homologs; protease TldD 3533423 tldD 1171376003451 tldD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protease TldD YP_007904500.1 3531978 R 1171376 CDS YP_007904501.1 482905941 complement(3533568..3537368) 1 NC_021151.1 COG3164 Predicted membrane protein; hypothetical protein 3537368 1171376003452 STU288_17070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904501.1 3533568 R 1171376 CDS YP_007904502.1 482905942 complement(3537475..3538944) 1 NC_021151.1 COG1530 Ribonucleases G and E; ribonuclease G 3538944 1171376003453 STU288_17075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease G YP_007904502.1 3537475 R 1171376 CDS YP_007904503.1 482905943 complement(3538934..3539527) 1 NC_021151.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 3539527 1171376003454 STU288_17080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Maf-like protein YP_007904503.1 3538934 R 1171376 CDS YP_007904504.1 482905944 complement(3539536..3540024) 1 NC_021151.1 COG2891 Cell shape-determining protein; rod shape-determining protein MreD 3540024 1171376003455 STU288_17085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rod shape-determining protein MreD YP_007904504.1 3539536 R 1171376 CDS YP_007904505.1 482905945 complement(3540027..3541079) 1 NC_021151.1 COG1792 Cell shape-determining protein; rod shape-determining protein MreC 3541079 1171376003456 STU288_17090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rod shape-determining protein MreC YP_007904505.1 3540027 R 1171376 CDS YP_007904506.1 482905946 complement(3541144..3542187) 1 NC_021151.1 COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 3542187 1171376003457 STU288_17095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rod shape-determining protein MreB YP_007904506.1 3541144 R 1171376 CDS YP_007904507.1 482905947 complement(3542495..3544435) 1 NC_021151.1 COG2199 FOG: GGDEF domain; regulatory protein CsrD 3544435 1171376003458 STU288_17100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein CsrD YP_007904507.1 3542495 R 1171376 CDS YP_007904508.1 482905948 3544639..3545613 1 NC_021151.1 COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; hypothetical protein 3545613 1171376003459 STU288_17105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904508.1 3544639 D 1171376 CDS YP_007904509.1 482905949 3545726..3546730 1 NC_021151.1 COG2041 Sulfite oxidase and related enzymes; TMAO/DMSO reductase 3546730 1171376003460 STU288_17110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TMAO/DMSO reductase YP_007904509.1 3545726 D 1171376 CDS YP_007904510.1 482905950 3546731..3547330 1 NC_021151.1 COG2717 Predicted membrane protein; sulfite oxidase subunit YedZ 3547330 1171376003461 STU288_17115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfite oxidase subunit YedZ YP_007904510.1 3546731 D 1171376 CDS YP_007904511.1 482905951 3547723..3548193 1 NC_021151.1 COG0511 Biotin carboxyl carrier protein; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3548193 1171376003462 STU288_17120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_007904511.1 3547723 D 1171376 CDS YP_007904512.1 482905952 3548204..3549553 1 NC_021151.1 COG0439 Biotin carboxylase; acetyl-CoA carboxylase biotin carboxylase subunit 3549553 1171376003463 STU288_17125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl-CoA carboxylase biotin carboxylase subunit YP_007904512.1 3548204 D 1171376 CDS YP_007904513.1 482905953 3549662..3549904 1 NC_021151.1 COG3924 Predicted membrane protein; hypothetical protein 3549904 1171376003464 STU288_17130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904513.1 3549662 D 1171376 CDS YP_007904514.1 482905954 3549894..3551345 1 NC_021151.1 COG4145 Na+/panthothenate symporter; sodium/panthothenate symporter 3551345 panF 1171376003465 panF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium/panthothenate symporter YP_007904514.1 3549894 D 1171376 CDS YP_007904515.1 482905955 3551357..3552238 1 NC_021151.1 COG2264 Ribosomal protein L11 methylase; ribosomal protein L11 methyltransferase 3552238 prmA 1171376003466 prmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal protein L11 methyltransferase YP_007904515.1 3551357 D 1171376 CDS YP_007904516.1 482905956 3552899..3553864 1 NC_021151.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase B 3553864 1171376003467 STU288_17145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA-dihydrouridine synthase B YP_007904516.1 3552899 D 1171376 CDS YP_007904517.1 482905957 3553890..3554186 1 NC_021151.1 COG2901 Factor for inversion stimulation Fis, transcriptional activator; Factor for inversion stimulation Fis, transcriptional activator 3554186 1171376003468 STU288_17150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Factor for inversion stimulation Fis, transcriptional activator YP_007904517.1 3553890 D 1171376 CDS YP_007904518.1 482905958 3554272..3555156 1 NC_021151.1 COG0863 DNA modification methylase; methyltransferase 3555156 1171376003469 STU288_17155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyltransferase YP_007904518.1 3554272 D 1171376 CDS YP_007904519.1 482905959 3555239..3555403 1 NC_021151.1 hypothetical protein 3555403 1171376003470 STU288_17160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904519.1 3555239 D 1171376 CDS YP_007904520.1 482905960 3555554..3557653 1 NC_021151.1 COG3300 MHYT domain (predicted integral membrane sensor domain); putative signal transduction protein 3557653 1171376003471 STU288_17165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative signal transduction protein YP_007904520.1 3555554 D 1171376 CDS YP_007904521.1 482905961 complement(3557656..3558324) 1 NC_021151.1 COG1309 Transcriptional regulator; DNA-binding transcriptional regulator EnvR 3558324 1171376003472 STU288_17170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator EnvR YP_007904521.1 3557656 R 1171376 CDS YP_007904522.1 482905962 3558738..3559895 1 NC_021151.1 COG0845 Membrane-fusion protein; acriflavine resistance protein E 3559895 1171376003473 STU288_17175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acriflavine resistance protein E YP_007904522.1 3558738 D 1171376 CDS YP_007904523.1 482905963 3559907..3563020 1 NC_021151.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrF 3563020 1171376003474 STU288_17180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein AcrF YP_007904523.1 3559907 D 1171376 CDS YP_007904524.1 482905964 3563256..3563477 1 NC_021151.1 hypothetical protein 3563477 1171376003475 STU288_17185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904524.1 3563256 D 1171376 CDS YP_007904525.1 482905965 complement(3569848..3570000) 1 NC_021151.1 hypothetical protein 3570000 1171376003482 STU288_17190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904525.1 3569848 R 1171376 CDS YP_007904526.1 482905966 3570114..3570668 1 NC_021151.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; transferase 3570668 1171376003483 STU288_17195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transferase YP_007904526.1 3570114 D 1171376 CDS YP_007904527.1 482905967 complement(3570644..3570901) 1 NC_021151.1 hypothetical protein 3570901 1171376003484 STU288_17200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904527.1 3570644 R 1171376 CDS YP_007904528.1 482905968 complement(3570898..3571716) 1 NC_021151.1 COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 3571716 aroE 1171376003485 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 shikimate 5-dehydrogenase YP_007904528.1 3570898 R 1171376 CDS YP_007904529.1 482905969 complement(3571721..3572293) 1 NC_021151.1 COG0009 Putative translation factor (SUA5); tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein 3572293 1171376003486 STU288_17210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein YP_007904529.1 3571721 R 1171376 CDS YP_007904530.1 482905970 complement(3572298..3572840) 1 NC_021151.1 COG0551 Zn-finger domain associated with topoisomerase type I; hypothetical protein 3572840 1171376003487 STU288_17215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904530.1 3572298 R 1171376 CDS YP_007904531.1 482905971 complement(3572867..3573340) 1 NC_021151.1 COG2922 Uncharacterized protein conserved in bacteria; hypothetical protein 3573340 1171376003488 STU288_17220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904531.1 3572867 R 1171376 CDS YP_007904532.1 482905972 complement(3573312..3574436) 1 NC_021151.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; hypothetical protein 3574436 1171376003489 STU288_17225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904532.1 3573312 R 1171376 CDS YP_007904533.1 482905973 3574568..3575077 1 NC_021151.1 COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 3575077 def 1171376003490 def Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptide deformylase YP_007904533.1 3574568 D 1171376 CDS YP_007904534.1 482905974 3575093..3576040 1 NC_021151.1 COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3576040 fmt 1171376003491 fmt Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionyl-tRNA formyltransferase YP_007904534.1 3575093 D 1171376 CDS YP_007904535.1 482905975 3576092..3577381 1 NC_021151.1 COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase B 3577381 1171376003492 STU288_17240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA methyltransferase B YP_007904535.1 3576092 D 1171376 CDS YP_007904536.1 482905976 3577403..3578779 1 NC_021151.1 COG0569 K+ transport systems, NAD-binding component; potassium transporter peripheral membrane component 3578779 trkA 1171376003493 trkA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium transporter peripheral membrane component YP_007904536.1 3577403 D 1171376 CDS YP_007904537.1 482905977 3578921..3579334 1 NC_021151.1 COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 3579334 mscL 1171376003494 mscL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 large-conductance mechanosensitive channel YP_007904537.1 3578921 D 1171376 CDS YP_007904538.1 482905978 complement(3579270..3579539) 1 NC_021151.1 COG3036 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3579539 1171376003495 STU288_17255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904538.1 3579270 R 1171376 CDS YP_007904539.1 482905979 complement(3579597..3580022) 1 NC_021151.1 COG0789 Predicted transcriptional regulators; zinc-responsive transcriptional regulator 3580022 zntR 1171376003496 zntR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc-responsive transcriptional regulator YP_007904539.1 3579597 R 1171376 CDS YP_007904540.1 482905980 complement(3580033..3580401) 1 NC_021151.1 hypothetical protein 3580401 1171376003497 STU288_17265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904540.1 3580033 R 1171376 CDS YP_007904541.1 482905981 complement(3580508..3580891) 1 NC_021151.1 COG0203 Ribosomal protein L17; 50S ribosomal protein L17 3580891 rplQ 1171376003498 rplQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L17 YP_007904541.1 3580508 R 1171376 CDS YP_007904542.1 482905982 complement(3580932..3581921) 1 NC_021151.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha 3581921 1171376003499 STU288_17275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-directed RNA polymerase subunit alpha YP_007904542.1 3580932 R 1171376 CDS YP_007904543.1 482905983 complement(3581947..3582567) 1 NC_021151.1 COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 3582567 rpsD 1171376003500 rpsD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S4 YP_007904543.1 3581947 R 1171376 CDS YP_007904544.1 482905984 complement(3582601..3582990) 1 NC_021151.1 COG0100 Ribosomal protein S11; 30S ribosomal protein S11 3582990 1171376003501 STU288_17285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S11 YP_007904544.1 3582601 R 1171376 CDS YP_007904545.1 482905985 complement(3583007..3583363) 1 NC_021151.1 COG0099 Ribosomal protein S13; 30S ribosomal protein S13 3583363 rpsM 1171376003502 rpsM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S13 YP_007904545.1 3583007 R 1171376 CDS YP_007904546.1 482905986 complement(3583510..3583626) 1 NC_021151.1 COG0257 Ribosomal protein L36; LSU ribosomal protein L36P 3583626 1171376003503 STU288_17295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LSU ribosomal protein L36P YP_007904546.1 3583510 R 1171376 CDS YP_007904547.1 482905987 complement(3583658..3584989) 1 NC_021151.1 COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY 3584989 secY 1171376003504 secY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecY YP_007904547.1 3583658 R 1171376 CDS YP_007904548.1 482905988 complement(3584997..3585431) 1 NC_021151.1 COG0200 Ribosomal protein L15; 50S ribosomal protein L15 3585431 1171376003505 STU288_17305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L15 YP_007904548.1 3584997 R 1171376 CDS YP_007904549.1 482905989 complement(3585435..3585614) 1 NC_021151.1 COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 3585614 rpmD 1171376003506 rpmD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L30 YP_007904549.1 3585435 R 1171376 CDS YP_007904550.1 482905990 complement(3585618..3586121) 1 NC_021151.1 COG0098 Ribosomal protein S5; 30S ribosomal protein S5 3586121 rpsE 1171376003507 rpsE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S5 YP_007904550.1 3585618 R 1171376 CDS YP_007904551.1 482905991 complement(3586136..3586489) 1 NC_021151.1 COG0256 Ribosomal protein L18; 50S ribosomal protein L18 3586489 rplR 1171376003508 rplR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L18 YP_007904551.1 3586136 R 1171376 CDS YP_007904552.1 482905992 complement(3586499..3587032) 1 NC_021151.1 COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 3587032 rplF 1171376003509 rplF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L6 YP_007904552.1 3586499 R 1171376 CDS YP_007904553.1 482905993 complement(3587045..3587437) 1 NC_021151.1 COG0096 Ribosomal protein S8; 30S ribosomal protein S8 3587437 1171376003510 STU288_17330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S8 YP_007904553.1 3587045 R 1171376 CDS YP_007904554.1 482905994 complement(3587471..3587776) 1 NC_021151.1 COG0199 Ribosomal protein S14; 30S ribosomal protein S14 3587776 rpsN 1171376003511 rpsN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S14 YP_007904554.1 3587471 R 1171376 CDS YP_007904555.1 482905995 complement(3587791..3588330) 1 NC_021151.1 COG0094 Ribosomal protein L5; 50S ribosomal protein L5 3588330 rplE 1171376003512 rplE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L5 YP_007904555.1 3587791 R 1171376 CDS YP_007904556.1 482905996 complement(3588345..3588659) 1 NC_021151.1 COG0198 Ribosomal protein L24; 50S ribosomal protein L24 3588659 1171376003513 STU288_17345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L24 YP_007904556.1 3588345 R 1171376 CDS YP_007904557.1 482905997 complement(3588670..3589041) 1 NC_021151.1 COG0093 Ribosomal protein L14; 50S ribosomal protein L14 3589041 rplN 1171376003514 rplN Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L14 YP_007904557.1 3588670 R 1171376 CDS YP_007904558.1 482905998 complement(3589205..3589459) 1 NC_021151.1 COG0186 Ribosomal protein S17; 30S ribosomal protein S17 3589459 rpsQ 1171376003515 rpsQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S17 YP_007904558.1 3589205 R 1171376 CDS YP_007904559.1 482905999 complement(3589459..3589650) 1 NC_021151.1 COG0255 Ribosomal protein L29; 50S ribosomal protein L29 3589650 1171376003516 STU288_17360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L29 YP_007904559.1 3589459 R 1171376 CDS YP_007904560.1 482906000 complement(3589650..3590060) 1 NC_021151.1 COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 3590060 rplP 1171376003517 rplP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L16 YP_007904560.1 3589650 R 1171376 CDS YP_007904561.1 482906001 complement(3590073..3590774) 1 NC_021151.1 COG0092 Ribosomal protein S3; 30S ribosomal protein S3 3590774 1171376003518 STU288_17370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S3 YP_007904561.1 3590073 R 1171376 CDS YP_007904562.1 482906002 complement(3590792..3591124) 1 NC_021151.1 COG0091 Ribosomal protein L22; 50S ribosomal protein L22 3591124 1171376003519 STU288_17375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L22 YP_007904562.1 3590792 R 1171376 CDS YP_007904563.1 482906003 complement(3591139..3591417) 1 NC_021151.1 COG0185 Ribosomal protein S19; 30S ribosomal protein S19 3591417 rpsS 1171376003520 rpsS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S19 YP_007904563.1 3591139 R 1171376 CDS YP_007904564.1 482906004 complement(3591434..3592255) 1 NC_021151.1 COG0090 Ribosomal protein L2; 50S ribosomal protein L2 3592255 rplB 1171376003521 rplB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L2 YP_007904564.1 3591434 R 1171376 CDS YP_007904565.1 482906005 complement(3592273..3592575) 1 NC_021151.1 COG0089 Ribosomal protein L23; 50S ribosomal protein L23 3592575 rplW 1171376003522 rplW Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L23 YP_007904565.1 3592273 R 1171376 CDS YP_007904566.1 482906006 complement(3592572..3593177) 1 NC_021151.1 COG0088 Ribosomal protein L4; LSU ribosomal protein L4P 3593177 1171376003523 STU288_17395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LSU ribosomal protein L4P YP_007904566.1 3592572 R 1171376 CDS YP_007904567.1 482906007 complement(3593188..3593817) 1 NC_021151.1 COG0087 Ribosomal protein L3; 50S ribosomal protein L3 3593817 rplC 1171376003524 rplC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L3 YP_007904567.1 3593188 R 1171376 CDS YP_007904568.1 482906008 complement(3593850..3594161) 1 NC_021151.1 COG0051 Ribosomal protein S10; SSU ribosomal protein S10P 3594161 1171376003525 STU288_17405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SSU ribosomal protein S10P YP_007904568.1 3593850 R 1171376 CDS YP_007904569.1 482906009 3594541..3595008 1 NC_021151.1 COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; type III leader peptidase 3595008 1171376003526 STU288_17410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III leader peptidase YP_007904569.1 3594541 D 1171376 CDS YP_007904570.1 482906010 complement(3595005..3595481) 1 NC_021151.1 COG2193 Bacterioferritin (cytochrome b1); bacterioferritin 3595481 1171376003527 STU288_17415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacterioferritin YP_007904570.1 3595005 R 1171376 CDS YP_007904571.1 482906011 complement(3595554..3595748) 1 NC_021151.1 COG2906 Bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin 3595748 1171376003528 STU288_17420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacterioferritin-associated ferredoxin YP_007904571.1 3595554 R 1171376 CDS YP_007904572.1 482906012 complement(3595761..3595952) 1 NC_021151.1 COG4267 Predicted membrane protein; elongation factor Tu 3595952 1171376003529 STU288_17425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor Tu YP_007904572.1 3595761 R 1171376 CDS YP_007904573.1 482906013 complement(3595933..3597117) 1 NC_021151.1 COG0050 GTPases - translation elongation factors; Elongation factor Tu 3597117 1171376003530 STU288_17430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Elongation factor Tu YP_007904573.1 3595933 R 1171376 CDS YP_007904574.1 482906014 complement(3597189..3599303) 1 NC_021151.1 COG0480 Translation elongation factors (GTPases); elongation factor G 3599303 1171376003531 STU288_17435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor G YP_007904574.1 3597189 R 1171376 CDS YP_007904575.1 482906015 complement(3599400..3599846) 1 NC_021151.1 COG0049 Ribosomal protein S7; 30S ribosomal protein S7 3599846 1171376003532 STU288_17440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S7 YP_007904575.1 3599400 R 1171376 CDS YP_007904576.1 482906016 complement(3599824..3600111) 1 NC_021151.1 COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur; sulfur transfer complex subunit TusB 3600111 1171376003533 STU288_17445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur transfer complex subunit TusB YP_007904576.1 3599824 R 1171376 CDS YP_007904577.1 482906017 complement(3600119..3600475) 1 NC_021151.1 COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; sulfur relay protein TusC 3600475 1171376003534 STU288_17450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur relay protein TusC YP_007904577.1 3600119 R 1171376 CDS YP_007904578.1 482906018 complement(3600475..3600861) 1 NC_021151.1 COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; sulfur transfer complex subunit TusD 3600861 1171376003535 STU288_17455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur transfer complex subunit TusD YP_007904578.1 3600475 R 1171376 CDS YP_007904579.1 482906019 complement(3600861..3601583) 1 NC_021151.1 COG2964 Uncharacterized protein conserved in bacteria; hypothetical protein 3601583 1171376003536 STU288_17460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904579.1 3600861 R 1171376 CDS YP_007904580.1 482906020 complement(3601860..3602678) 1 NC_021151.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase 3602678 1171376003537 STU288_17465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007904580.1 3601860 R 1171376 CDS YP_007904581.1 482906021 3602898..3603116 1 NC_021151.1 COG2900 Uncharacterized protein conserved in bacteria; lysis protein 3603116 1171376003538 STU288_17470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysis protein YP_007904581.1 3602898 D 1171376 CDS YP_007904582.1 482906022 complement(3603304..3603894) 1 NC_021151.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 3603894 1171376003539 STU288_17475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007904582.1 3603304 R 1171376 CDS YP_007904583.1 482906023 complement(3603989..3604189) 1 NC_021151.1 COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; hypothetical protein 3604189 1171376003540 STU288_17480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904583.1 3603989 R 1171376 CDS YP_007904584.1 482906024 complement(3604200..3606005) 1 NC_021151.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefB 3606005 1171376003541 STU288_17485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione-regulated potassium-efflux system protein KefB YP_007904584.1 3604200 R 1171376 CDS YP_007904585.1 482906025 complement(3606005..3606556) 1 NC_021151.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefG 3606556 1171376003542 STU288_17490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione-regulated potassium-efflux system ancillary protein KefG YP_007904585.1 3606005 R 1171376 CDS YP_007904586.1 482906026 3606822..3608729 1 NC_021151.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 3608729 1171376003543 STU288_17495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007904586.1 3606822 D 1171376 CDS YP_007904587.1 482906027 3608892..3609113 1 NC_021151.1 COG0583 Transcriptional regulator; hypothetical protein 3609113 1171376003544 STU288_17500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904587.1 3608892 D 1171376 CDS YP_007904588.1 482906028 complement(3609115..3609426) 1 NC_021151.1 monooxygenase 3609426 1171376003545 STU288_17505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 monooxygenase YP_007904588.1 3609115 R 1171376 CDS YP_007904589.1 482906029 3609669..3610691 1 NC_021151.1 COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; hydrolase 3610691 1171376003546 STU288_17510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007904589.1 3609669 D 1171376 CDS YP_007904590.1 482906030 3610688..3610906 1 NC_021151.1 COG3089 Uncharacterized protein conserved in bacteria; hypothetical protein 3610906 1171376003547 STU288_17515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904590.1 3610688 D 1171376 CDS YP_007904591.1 482906031 3610958..3611827 1 NC_021151.1 COG3954 Phosphoribulokinase; phosphoribulokinase 3611827 1171376003548 STU288_17520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribulokinase YP_007904591.1 3610958 D 1171376 CDS YP_007904592.1 482906032 complement(3611923..3612327) 1 NC_021151.1 COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 3612327 1171376003549 STU288_17525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904592.1 3611923 R 1171376 CDS YP_007904593.1 482906033 3612635..3613267 1 NC_021151.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional dual regulator Crp 3613267 1171376003550 STU288_17530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional dual regulator Crp YP_007904593.1 3612635 D 1171376 CDS YP_007904594.1 482906034 3613316..3615403 1 NC_021151.1 COG1289 Predicted membrane protein; YccS/YhfK family integral membrane protein 3615403 1171376003551 STU288_17535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YccS/YhfK family integral membrane protein YP_007904594.1 3613316 D 1171376 CDS YP_007904595.1 482906035 complement(3615446..3616663) 1 NC_021151.1 COG4992 Ornithine/acetylornithine aminotransferase; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3616663 argD 1171376003552 argD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_007904595.1 3615446 R 1171376 CDS YP_007904596.1 482906036 complement(3616749..3617312) 1 NC_021151.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; para-aminobenzoate synthase component II 3617312 1171376003553 STU288_17545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 para-aminobenzoate synthase component II YP_007904596.1 3616749 R 1171376 CDS YP_007904597.1 482906037 complement(3617344..3617946) 1 NC_021151.1 COG2184 Protein involved in cell division; cell filamentation protein Fic 3617946 1171376003554 STU288_17550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell filamentation protein Fic YP_007904597.1 3617344 R 1171376 CDS YP_007904598.1 482906038 complement(3617936..3618103) 1 NC_021151.1 hypothetical protein 3618103 1171376003555 STU288_17555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904598.1 3617936 R 1171376 CDS YP_007904599.1 482906039 complement(3618212..3618784) 1 NC_021151.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase A (rotamase A) 3618784 1171376003556 STU288_17560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_007904599.1 3618212 R 1171376 CDS YP_007904600.1 482906040 3619061..3620242 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; transporter 3620242 1171376003557 STU288_17565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007904600.1 3619061 D 1171376 CDS YP_007904601.1 482906041 3620505..3623048 1 NC_021151.1 COG1251 NAD(P)H-nitrite reductase; nitrite reductase subunit NirD 3623048 1171376003558 STU288_17570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrite reductase subunit NirD YP_007904601.1 3620505 D 1171376 CDS YP_007904602.1 482906042 3623045..3623371 1 NC_021151.1 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; nitrite reductase small subunit 3623371 nirD 1171376003559 nirD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrite reductase small subunit YP_007904602.1 3623045 D 1171376 CDS YP_007904603.1 482906043 3623637..3624446 1 NC_021151.1 COG2116 Formate/nitrite family of transporters; nitrite transporter NirC 3624446 1171376003560 STU288_17580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrite transporter NirC YP_007904603.1 3623637 D 1171376 CDS YP_007904604.1 482906044 3624458..3625831 1 NC_021151.1 COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); siroheme synthase 3625831 cysG 1171376003561 cysG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 siroheme synthase YP_007904604.1 3624458 D 1171376 CDS YP_007904605.1 482906045 3626166..3632018 1 NC_021151.1 putative surface-exposed virulence protein 3632018 1171376003562 STU288_17590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative surface-exposed virulence protein YP_007904605.1 3626166 D 1171376 CDS YP_007904606.1 482906046 complement(3632151..3632609) 1 NC_021151.1 COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 3632609 1171376003563 STU288_17595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase for insertion sequence element IS200 YP_007904606.1 3632151 R 1171376 CDS YP_007904607.1 482906047 3632923..3633093 1 NC_021151.1 outer membrane lipoprotein 3633093 1171376003564 STU288_17600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007904607.1 3632923 D 1171376 CDS YP_007904608.1 482906048 complement(3633238..3634242) 1 NC_021151.1 COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase 3634242 1171376003565 STU288_17605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tryptophanyl-tRNA ligase YP_007904608.1 3633238 R 1171376 CDS YP_007904609.1 482906049 complement(3634235..3634993) 1 NC_021151.1 COG0546 Predicted phosphatases; phosphoglycolate phosphatase 3634993 1171376003566 STU288_17610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycolate phosphatase YP_007904609.1 3634235 R 1171376 CDS YP_007904610.1 482906050 complement(3634986..3635663) 1 NC_021151.1 COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 3635663 1171376003567 STU288_17615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribulose-phosphate 3-epimerase YP_007904610.1 3634986 R 1171376 CDS YP_007904611.1 482906051 complement(3635681..3636517) 1 NC_021151.1 COG0338 Site-specific DNA methylase; DNA adenine methylase 3636517 1171376003568 STU288_17620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA adenine methylase YP_007904611.1 3635681 R 1171376 CDS YP_007904612.1 482906052 complement(3636698..3637975) 1 NC_021151.1 COG3266 Uncharacterized protein conserved in bacteria; cell division protein DamX 3637975 1171376003569 STU288_17625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein DamX YP_007904612.1 3636698 R 1171376 CDS YP_007904613.1 482906053 complement(3638073..3639161) 1 NC_021151.1 COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 3639161 aroB 1171376003570 aroB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-dehydroquinate synthase YP_007904613.1 3638073 R 1171376 CDS YP_007904614.1 482906054 complement(3639218..3639739) 1 NC_021151.1 COG0703 Shikimate kinase; shikimate kinase I 3639739 aroK 1171376003571 aroK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 shikimate kinase I YP_007904614.1 3639218 R 1171376 CDS YP_007904615.1 482906055 complement(3640204..3641442) 1 NC_021151.1 COG4796 Type II secretory pathway, component HofQ; outer membrane porin HofQ 3641442 hofQ 1171376003572 hofQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane porin HofQ YP_007904615.1 3640204 R 1171376 CDS YP_007904616.1 482906056 complement(3641357..3641758) 1 NC_021151.1 putative inner membrane protein 3641758 1171376003573 STU288_17645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904616.1 3641357 R 1171376 CDS YP_007904617.1 482906057 complement(3641748..3642221) 1 NC_021151.1 hypothetical protein 3642221 1171376003574 STU288_17650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904617.1 3641748 R 1171376 CDS YP_007904618.1 482906058 complement(3642205..3642744) 1 NC_021151.1 COG3166 Tfp pilus assembly protein PilN; PilN family protein 3642744 1171376003575 STU288_17655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PilN family protein YP_007904618.1 3642205 R 1171376 CDS YP_007904619.1 482906059 complement(3642744..3643523) 1 NC_021151.1 putative pilus assembly protein 3643523 1171376003576 STU288_17660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative pilus assembly protein YP_007904619.1 3642744 R 1171376 CDS YP_007904620.1 482906060 3643644..3646196 1 NC_021151.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a 3646196 mrcA 1171376003577 mrcA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 penicillin-binding protein 1a YP_007904620.1 3643644 D 1171376 CDS YP_007904621.1 482906061 complement(3646292..3646855) 1 NC_021151.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; adenosine nucleotide hydrolase NudE 3646855 nudE 1171376003578 nudE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenosine nucleotide hydrolase NudE YP_007904621.1 3646292 R 1171376 CDS YP_007904622.1 482906062 3647178..3649310 1 NC_021151.1 COG3538 Uncharacterized conserved protein; IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system 3649310 1171376003579 STU288_17675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system YP_007904622.1 3647178 D 1171376 CDS YP_007904623.1 482906063 3649375..3650043 1 NC_021151.1 COG1011 Predicted hydrolase (HAD superfamily); GMP/IMP nucleotidase 3650043 1171376003580 STU288_17680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GMP/IMP nucleotidase YP_007904623.1 3649375 D 1171376 CDS YP_007904624.1 482906064 3650054..3650455 1 NC_021151.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 3650455 1171376003581 STU288_17685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosome-associated heat shock protein Hsp15 YP_007904624.1 3650054 D 1171376 CDS YP_007904625.1 482906065 3650480..3651358 1 NC_021151.1 COG1281 Disulfide bond chaperones of the HSP33 family; Hsp33-like chaperonin 3651358 hslO 1171376003582 hslO Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Hsp33-like chaperonin YP_007904625.1 3650480 D 1171376 CDS YP_007904626.1 482906066 complement(3651468..3653177) 1 NC_021151.1 hypothetical protein 3653177 1171376003583 STU288_17695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904626.1 3651468 R 1171376 CDS YP_007904627.1 482906067 3653557..3655176 1 NC_021151.1 COG1866 Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 3655176 1171376003584 STU288_17700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate carboxykinase YP_007904627.1 3653557 D 1171376 CDS YP_007904628.1 482906068 complement(3655251..3656603) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; osmolarity sensor protein 3656603 envZ 1171376003585 envZ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 osmolarity sensor protein YP_007904628.1 3655251 R 1171376 CDS YP_007904629.1 482906069 complement(3656600..3657319) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; osmolarity response regulator 3657319 ompR 1171376003586 ompR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 osmolarity response regulator YP_007904629.1 3656600 R 1171376 CDS YP_007904630.1 482906070 3657545..3658018 1 NC_021151.1 COG0782 Transcription elongation factor; transcription elongation factor GreB 3658018 greB 1171376003587 greB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription elongation factor GreB YP_007904630.1 3657545 D 1171376 CDS YP_007904631.1 482906071 3658117..3660447 1 NC_021151.1 COG2183 Transcriptional accessory protein; transcriptional accessory protein 3660447 1171376003588 STU288_17720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional accessory protein YP_007904631.1 3658117 D 1171376 CDS YP_007904632.1 482906072 3660884..3661111 1 NC_021151.1 COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 3661111 feoA 1171376003589 feoA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrous iron transport protein A YP_007904632.1 3660884 D 1171376 CDS YP_007904633.1 482906073 3661130..3663448 1 NC_021151.1 COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 3663448 feoB 1171376003590 feoB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrous iron transport protein B YP_007904633.1 3661130 D 1171376 CDS YP_007904634.1 482906074 3663461..3663697 1 NC_021151.1 ferrous iron transport protein FeoC 3663697 1171376003591 STU288_17735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrous iron transport protein FeoC YP_007904634.1 3663461 D 1171376 CDS YP_007904635.1 482906075 3663932..3664846 1 NC_021151.1 Transposase 3664846 1171376003592 STU288_17740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transposase YP_007904635.1 3663932 D 1171376 CDS YP_007904636.1 482906076 complement(3664882..3665652) 1 NC_021151.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); carboxylesterase BioH 3665652 1171376003593 STU288_17745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carboxylesterase BioH YP_007904636.1 3664882 R 1171376 CDS YP_007904637.1 482906077 3665690..3666373 1 NC_021151.1 COG1040 Predicted amidophosphoribosyltransferases; DNA utilization protein GntX 3666373 1171376003594 STU288_17750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA utilization protein GntX YP_007904637.1 3665690 D 1171376 CDS YP_007904638.1 482906078 3666432..3667007 1 NC_021151.1 COG0316 Uncharacterized conserved protein; Fe/S biogenesis protein NfuA 3667007 1171376003595 STU288_17755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Fe/S biogenesis protein NfuA YP_007904638.1 3666432 D 1171376 CDS YP_007904639.1 482906079 3667384..3668700 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; high-affinity gluconate transporter 3668700 1171376003596 STU288_17760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 high-affinity gluconate transporter YP_007904639.1 3667384 D 1171376 CDS YP_007904640.1 482906080 complement(3668819..3670897) 1 NC_021151.1 COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 3670897 malQ 1171376003597 malQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-alpha-glucanotransferase YP_007904640.1 3668819 R 1171376 CDS YP_007904641.1 482906081 complement(3670907..3673300) 1 NC_021151.1 COG0058 Glucan phosphorylase; maltodextrin phosphorylase 3673300 1171376003598 STU288_17770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltodextrin phosphorylase YP_007904641.1 3670907 R 1171376 CDS YP_007904642.1 482906082 3673894..3676599 1 NC_021151.1 COG2909 ATP-dependent transcriptional regulator; transcriptional regulator MalT 3676599 1171376003599 STU288_17775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator MalT YP_007904642.1 3673894 D 1171376 CDS YP_007904643.1 482906083 complement(3676687..3676962) 1 NC_021151.1 COG3041 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3676962 1171376003600 STU288_17780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904643.1 3676687 R 1171376 CDS YP_007904644.1 482906084 complement(3676965..3677225) 1 NC_021151.1 COG3077 DNA-damage-inducible protein J; antitoxin DinJ 3677225 1171376003601 STU288_17785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 antitoxin DinJ YP_007904644.1 3676965 R 1171376 CDS YP_007904645.1 482906085 complement(3677334..3678353) 1 NC_021151.1 COG0430 RNA 3'-terminal phosphate cyclase; RNA 3'-terminal-phosphate cyclase 3678353 1171376003602 STU288_17790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA 3'-terminal-phosphate cyclase YP_007904645.1 3677334 R 1171376 CDS YP_007904646.1 482906086 complement(3678357..3679571) 1 NC_021151.1 COG1690 Uncharacterized conserved protein; putative cytoplasmic protein 3679571 1171376003603 STU288_17795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904646.1 3678357 R 1171376 CDS YP_007904647.1 482906087 3679764..3681347 1 NC_021151.1 COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; transcriptional regulatory protein RtcR 3681347 1171376003604 STU288_17800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulatory protein RtcR YP_007904647.1 3679764 D 1171376 CDS YP_007904648.1 482906088 complement(3681344..3682102) 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor GlpR 3682102 1171376003605 STU288_17805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor GlpR YP_007904648.1 3681344 R 1171376 CDS YP_007904649.1 482906089 complement(3682196..3683026) 1 NC_021151.1 COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); intramembrane serine protease GlpG 3683026 1171376003606 STU288_17810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 intramembrane serine protease GlpG YP_007904649.1 3682196 R 1171376 CDS YP_007904650.1 482906090 complement(3683102..3683428) 1 NC_021151.1 COG0607 Rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase 3683428 glpE 1171376003607 glpE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiosulfate sulfurtransferase YP_007904650.1 3683102 R 1171376 CDS YP_007904651.1 482906091 3683627..3685135 1 NC_021151.1 COG0578 Glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 3685135 glpD 1171376003608 glpD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate dehydrogenase YP_007904651.1 3683627 D 1171376 CDS YP_007904652.1 482906092 complement(3685182..3685727) 1 NC_021151.1 hypothetical protein 3685727 1171376003609 STU288_17825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904652.1 3685182 R 1171376 CDS YP_007904653.1 482906093 complement(3685737..3687233) 1 NC_021151.1 COG0226 ABC-type phosphate transport system, periplasmic component; periplasmic phosphate-binding protein 3687233 1171376003610 STU288_17830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic phosphate-binding protein YP_007904653.1 3685737 R 1171376 CDS YP_007904654.1 482906094 complement(3687390..3688499) 1 NC_021151.1 COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase 3688499 gldA 1171376003611 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol dehydrogenase YP_007904654.1 3687390 R 1171376 CDS YP_007904655.1 482906095 3688837..3690171 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein 3690171 1171376003612 STU288_17840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major facilitator superfamily protein YP_007904655.1 3688837 D 1171376 CDS YP_007904656.1 482906096 3690168..3691883 1 NC_021151.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxyacid dehydratase 3691883 1171376003613 STU288_17845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroxyacid dehydratase YP_007904656.1 3690168 D 1171376 CDS YP_007904657.1 482906097 3691927..3692832 1 NC_021151.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthetase 3692832 1171376003614 STU288_17850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrodipicolinate synthetase YP_007904657.1 3691927 D 1171376 CDS YP_007904658.1 482906098 complement(3692876..3693631) 1 NC_021151.1 COG1414 Transcriptional regulator; transcriptional regulator 3693631 1171376003615 STU288_17855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904658.1 3692876 R 1171376 CDS YP_007904659.1 482906099 complement(3693809..3696256) 1 NC_021151.1 COG0058 Glucan phosphorylase; glycogen phosphorylase 3696256 1171376003616 STU288_17860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycogen phosphorylase YP_007904659.1 3693809 R 1171376 CDS YP_007904660.1 482906100 complement(3696276..3697709) 1 NC_021151.1 COG0297 Glycogen synthase; glycogen synthase 3697709 glgA 1171376003617 glgA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycogen synthase YP_007904660.1 3696276 R 1171376 CDS YP_007904661.1 482906101 complement(3697709..3699004) 1 NC_021151.1 COG0448 ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase 3699004 glgC 1171376003618 glgC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-1-phosphate adenylyltransferase YP_007904661.1 3697709 R 1171376 CDS YP_007904662.1 482906102 complement(3699019..3700995) 1 NC_021151.1 COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen debranching enzyme 3700995 1171376003619 STU288_17875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycogen debranching enzyme YP_007904662.1 3699019 R 1171376 CDS YP_007904663.1 482906103 complement(3700992..3703178) 1 NC_021151.1 COG0296 1,4-alpha-glucan branching enzyme; glycogen branching enzyme 3703178 1171376003620 STU288_17880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycogen branching enzyme YP_007904663.1 3700992 R 1171376 CDS YP_007904664.1 482906104 complement(3703525..3704631) 1 NC_021151.1 COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 3704631 1171376003621 STU288_17885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate-semialdehyde dehydrogenase YP_007904664.1 3703525 R 1171376 CDS YP_007904665.1 482906105 3704758..3705138 1 NC_021151.1 putative inner membrane protein 3705138 1171376003622 STU288_17890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904665.1 3704758 D 1171376 CDS YP_007904666.1 482906106 complement(3705055..3706395) 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; low affinity gluconate transporter 3706395 1171376003623 STU288_17895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 low affinity gluconate transporter YP_007904666.1 3705055 R 1171376 CDS YP_007904667.1 482906107 complement(3706392..3706925) 1 NC_021151.1 COG3265 Gluconate kinase; gluconate kinase 1 3706925 gntK 1171376003624 gntK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gluconate kinase 1 YP_007904667.1 3706392 R 1171376 CDS YP_007904668.1 482906108 complement(3707064..3708059) 1 NC_021151.1 COG1609 Transcriptional regulators; gluconate operon transcriptional regulator 3708059 1171376003625 STU288_17905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gluconate operon transcriptional regulator YP_007904668.1 3707064 R 1171376 CDS YP_007904669.1 482906109 complement(3708189..3708884) 1 NC_021151.1 COG1741 Pirin-related protein; pirin 3708884 1171376003626 STU288_17910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pirin YP_007904669.1 3708189 R 1171376 CDS YP_007904670.1 482906110 complement(3709008..3710045) 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 3710045 1171376003627 STU288_17915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oxidoreductase YP_007904670.1 3709008 R 1171376 CDS YP_007904671.1 482906111 3710514..3711002 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase YhhY 3711002 1171376003628 STU288_17920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YhhY YP_007904671.1 3710514 D 1171376 CDS YP_007904672.1 482906112 3711266..3712480 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; putative ribokinase 3712480 1171376003629 STU288_17925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ribokinase YP_007904672.1 3711266 D 1171376 CDS YP_007904673.1 482906113 3712496..3713239 1 NC_021151.1 COG5426 Uncharacterized membrane protein; hypothetical protein 3713239 1171376003630 STU288_17930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904673.1 3712496 D 1171376 CDS YP_007904674.1 482906114 3713311..3714282 1 NC_021151.1 COG3238 Uncharacterized protein conserved in bacteria; putative inner membrane protein 3714282 1171376003631 STU288_17935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904674.1 3713311 D 1171376 CDS YP_007904675.1 482906115 3714279..3715313 1 NC_021151.1 COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold; phosphotriesterase 3715313 1171376003632 STU288_17940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphotriesterase YP_007904675.1 3714279 D 1171376 CDS YP_007904676.1 482906116 complement(3715358..3717100) 1 NC_021151.1 COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase 3717100 ggt 1171376003633 ggt Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gamma-glutamyltranspeptidase YP_007904676.1 3715358 R 1171376 CDS YP_007904677.1 482906117 3717226..3717642 1 NC_021151.1 hypothetical protein 3717642 1171376003634 STU288_17950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904677.1 3717226 D 1171376 CDS YP_007904678.1 482906118 complement(3717655..3718395) 1 NC_021151.1 COG0584 Glycerophosphoryl diester phosphodiesterase; cytoplasmic glycerophosphodiester phosphodiesterase 3718395 ugpQ 1171376003635 ugpQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoplasmic glycerophosphodiester phosphodiesterase YP_007904678.1 3717655 R 1171376 CDS YP_007904679.1 482906119 complement(3718392..3719462) 1 NC_021151.1 COG3839 ABC-type sugar transport systems, ATPase components; glycerol-3-phosphate transporter ATP-binding subunit 3719462 ugpC 1171376003636 ugpC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate transporter ATP-binding subunit YP_007904679.1 3718392 R 1171376 CDS YP_007904680.1 482906120 complement(3719464..3720309) 1 NC_021151.1 COG0395 ABC-type sugar transport system, permease component; glycerol-3-phosphate transporter membrane protein 3720309 1171376003637 STU288_17965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate transporter membrane protein YP_007904680.1 3719464 R 1171376 CDS YP_007904681.1 482906121 complement(3720306..3721193) 1 NC_021151.1 COG1175 ABC-type sugar transport systems, permease components; glycerol-3-phosphate transporter permease 3721193 1171376003638 STU288_17970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate transporter permease YP_007904681.1 3720306 R 1171376 CDS YP_007904682.1 482906122 complement(3721257..3722573) 1 NC_021151.1 COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate transporter periplasmic binding protein 3722573 1171376003639 STU288_17975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate transporter periplasmic binding protein YP_007904682.1 3721257 R 1171376 CDS YP_007904683.1 482906123 complement(3722832..3723200) 1 NC_021151.1 COG3654 Prophage maintenance system killer protein; death-on-curing protein 3723200 1171376003640 STU288_17980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 death-on-curing protein YP_007904683.1 3722832 R 1171376 CDS YP_007904684.1 482906124 complement(3723197..3723418) 1 NC_021151.1 COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein 3723418 1171376003641 STU288_17985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904684.1 3723197 R 1171376 CDS YP_007904685.1 482906125 complement(3723550..3724251) 1 NC_021151.1 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit 3724251 livF 1171376003642 livF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine/isoleucine/valine transporter ATP-binding subunit YP_007904685.1 3723550 R 1171376 CDS YP_007904686.1 482906126 complement(3724265..3725032) 1 NC_021151.1 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit 3725032 livG 1171376003643 livG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine/isoleucine/valine transporter ATP-binding subunit YP_007904686.1 3724265 R 1171376 CDS YP_007904687.1 482906127 complement(3725029..3726306) 1 NC_021151.1 COG4177 ABC-type branched-chain amino acid transport system, permease component; leucine/isoleucine/valine transporter permease subunit 3726306 livM 1171376003644 livM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine/isoleucine/valine transporter permease subunit YP_007904687.1 3725029 R 1171376 CDS YP_007904688.1 482906128 complement(3726303..3727229) 1 NC_021151.1 COG0559 Branched-chain amino acid ABC-type transport system, permease components; branched-chain amino acid transporter permease subunit LivH 3727229 1171376003645 STU288_18005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 branched-chain amino acid transporter permease subunit LivH YP_007904688.1 3726303 R 1171376 CDS YP_007904689.1 482906129 complement(3727289..3728398) 1 NC_021151.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK 3728398 1171376003646 STU288_18010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine ABC transporter subunit substrate-binding protein LivK YP_007904689.1 3727289 R 1171376 CDS YP_007904690.1 482906130 3728820..3729203 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 3729203 1171376003647 STU288_18015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904690.1 3728820 D 1171376 CDS YP_007904691.1 482906131 complement(3729398..3730501) 1 NC_021151.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK 3730501 1171376003648 STU288_18020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 leucine ABC transporter subunit substrate-binding protein LivK YP_007904691.1 3729398 R 1171376 CDS YP_007904692.1 482906132 complement(3730823..3731677) 1 NC_021151.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase factor sigma-32 3731677 1171376003649 STU288_18025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA polymerase factor sigma-32 YP_007904692.1 3730823 R 1171376 CDS YP_007904693.1 482906133 complement(3731923..3732978) 1 NC_021151.1 COG2177 Cell division protein; cell division ABC transporter subunit FtsX 3732978 ftsX 1171376003650 ftsX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division ABC transporter subunit FtsX YP_007904693.1 3731923 R 1171376 CDS YP_007904694.1 482906134 complement(3732971..3733639) 1 NC_021151.1 COG2884 Predicted ATPase involved in cell division; cell division protein FtsE 3733639 1171376003651 STU288_18035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein FtsE YP_007904694.1 3732971 R 1171376 CDS YP_007904695.1 482906135 complement(3733642..3735117) 1 NC_021151.1 COG0552 Signal recognition particle GTPase; signal recognition particle-docking protein FtsY 3735117 1171376003652 STU288_18040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 signal recognition particle-docking protein FtsY YP_007904695.1 3733642 R 1171376 CDS YP_007904696.1 482906136 3735243..3735839 1 NC_021151.1 COG0742 N6-adenine-specific methylase; 16S rRNA m(2)G966-methyltransferase 3735839 rsmD 1171376003653 rsmD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA m(2)G966-methyltransferase YP_007904696.1 3735243 D 1171376 CDS YP_007904697.1 482906137 3735829..3736098 1 NC_021151.1 COG3776 Predicted membrane protein; hypothetical protein 3736098 1171376003654 STU288_18050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904697.1 3735829 D 1171376 CDS YP_007904698.1 482906138 complement(3736120..3736491) 1 NC_021151.1 inner membrane protein 3736491 1171376003655 STU288_18055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007904698.1 3736120 R 1171376 CDS YP_007904699.1 482906139 3736633..3737259 1 NC_021151.1 COG3714 Predicted membrane protein; putative membrane protein yhhN 3737259 1171376003656 STU288_18060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative membrane protein yhhN YP_007904699.1 3736633 D 1171376 CDS YP_007904700.1 482906140 3737340..3739538 1 NC_021151.1 COG2217 Cation transport ATPase; zinc/cadmium/mercury/lead-transporting ATPase 3739538 zntA 1171376003657 zntA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc/cadmium/mercury/lead-transporting ATPase YP_007904700.1 3737340 D 1171376 CDS YP_007904701.1 482906141 3739738..3741381 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis citrate transducer 3741381 1171376003658 STU288_18070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyl-accepting chemotaxis citrate transducer YP_007904701.1 3739738 D 1171376 CDS YP_007904702.1 482906142 complement(3741405..3741650) 1 NC_021151.1 COG0425 Predicted redox protein, regulator of disulfide bond formation; sulfurtransferase tusA 3741650 1171376003659 STU288_18075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfurtransferase tusA YP_007904702.1 3741405 R 1171376 CDS YP_007904703.1 482906143 3741820..3742485 1 NC_021151.1 COG1738 Uncharacterized conserved protein; hypothetical protein 3742485 1171376003660 STU288_18080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904703.1 3741820 D 1171376 CDS YP_007904704.1 482906144 3742558..3743115 1 NC_021151.1 hypothetical protein 3743115 1171376003661 STU288_18085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904704.1 3742558 D 1171376 CDS YP_007904705.1 482906145 complement(3743119..3744336) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter 3744336 1171376003662 STU288_18090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major facilitator superfamily transporter YP_007904705.1 3743119 R 1171376 CDS YP_007904706.1 482906146 3744468..3745517 1 NC_021151.1 COG0628 Predicted permease; hypothetical protein 3745517 1171376003663 STU288_18095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904706.1 3744468 D 1171376 CDS YP_007904707.1 482906147 3745569..3746147 1 NC_021151.1 COG2091 Phosphopantetheinyl transferase; holo-ACP synthase 3746147 1171376003664 STU288_18100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 holo-ACP synthase YP_007904707.1 3745569 D 1171376 CDS YP_007904708.1 482906148 3746239..3746640 1 NC_021151.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 3746640 1171376003665 STU288_18105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nickel responsive regulator YP_007904708.1 3746239 D 1171376 CDS YP_007904709.1 482906149 complement(3746730..3747854) 1 NC_021151.1 COG0842 ABC-type multidrug transport system, permease component; ABC-2 type superfamily transport protein 3747854 1171376003666 STU288_18110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC-2 type superfamily transport protein YP_007904709.1 3746730 R 1171376 CDS YP_007904710.1 482906150 complement(3747854..3750595) 1 NC_021151.1 COG1131 ABC-type multidrug transport system, ATPase component; putative multidrug ABC transporter ATP-binding protein 3750595 1171376003667 STU288_18115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative multidrug ABC transporter ATP-binding protein YP_007904710.1 3747854 R 1171376 CDS YP_007904711.1 482906151 complement(3750592..3751659) 1 NC_021151.1 COG0845 Membrane-fusion protein; HlyD family secretion protein 3751659 1171376003668 STU288_18120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 HlyD family secretion protein YP_007904711.1 3750592 R 1171376 CDS YP_007904712.1 482906152 complement(3751965..3753161) 1 NC_021151.1 COG2081 Predicted flavoproteins; hypothetical protein 3753161 1171376003669 STU288_18125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904712.1 3751965 R 1171376 CDS YP_007904713.1 482906153 3753392..3754888 1 NC_021151.1 COG0306 Phosphate/sulphate permeases; phosphate transporter PitA 3754888 1171376003670 STU288_18130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate transporter PitA YP_007904713.1 3753392 D 1171376 CDS YP_007904714.1 482906154 complement(3755028..3755363) 1 NC_021151.1 universal stress protein UspB 3755363 1171376003671 STU288_18135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress protein UspB YP_007904714.1 3755028 R 1171376 CDS YP_007904715.1 482906155 3755751..3756185 1 NC_021151.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress global response regulator UspA 3756185 1171376003672 STU288_18140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 universal stress global response regulator UspA YP_007904715.1 3755751 D 1171376 CDS YP_007904716.1 482906156 3756510..3757979 1 NC_021151.1 COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease B 3757979 1171376003673 STU288_18145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptide/tripeptide permease B YP_007904716.1 3756510 D 1171376 CDS YP_007904717.1 482906157 complement(3758071..3758829) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; methyltransferase 3758829 1171376003674 STU288_18150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methyltransferase YP_007904717.1 3758071 R 1171376 CDS YP_007904718.1 482906158 complement(3758836..3760878) 1 NC_021151.1 COG0339 Zn-dependent oligopeptidases; oligopeptidase A 3760878 1171376003675 STU288_18155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligopeptidase A YP_007904718.1 3758836 R 1171376 CDS YP_007904719.1 482906159 complement(3761060..3762331) 1 NC_021151.1 COG0671 Membrane-associated phospholipid phosphatase; phosphatase 3762331 1171376003676 STU288_18160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatase YP_007904719.1 3761060 R 1171376 CDS YP_007904720.1 482906160 3762542..3763384 1 NC_021151.1 COG2961 Protein involved in catabolism of external DNA; DNA utilization protein YhiR 3763384 1171376003677 STU288_18165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA utilization protein YhiR YP_007904720.1 3762542 D 1171376 CDS YP_007904721.1 482906161 3763489..3764841 1 NC_021151.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; glutathione reductase 3764841 1171376003678 STU288_18170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione reductase YP_007904721.1 3763489 D 1171376 CDS YP_007904722.1 482906162 complement(3764888..3765931) 1 NC_021151.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase 3765931 1171376003679 STU288_18175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-asparaginase YP_007904722.1 3764888 R 1171376 CDS YP_007904723.1 482906163 complement(3765990..3767309) 1 NC_021151.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 3767309 1171376003680 STU288_18180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic C4-dicarboxylate transporter YP_007904723.1 3765990 R 1171376 CDS YP_007904724.1 482906164 complement(3767363..3768208) 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; carbohydrate kinase 3768208 1171376003681 STU288_18185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbohydrate kinase YP_007904724.1 3767363 R 1171376 CDS YP_007904725.1 482906165 complement(3768272..3769246) 1 NC_021151.1 COG2222 Predicted phosphosugar isomerases; phosphosugar-binding protein 3769246 1171376003682 STU288_18190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphosugar-binding protein YP_007904725.1 3768272 R 1171376 CDS YP_007904726.1 482906166 complement(3769425..3770144) 1 NC_021151.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 3770144 1171376003683 STU288_18195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007904726.1 3769425 R 1171376 CDS YP_007904727.1 482906167 3770470..3772119 1 NC_021151.1 COG1626 Neutral trehalase; trehalase 3772119 treF 1171376003684 treF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalase YP_007904727.1 3770470 D 1171376 CDS YP_007904728.1 482906168 complement(3772132..3773721) 1 NC_021151.1 hypothetical protein 3773721 1171376003685 STU288_18205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904728.1 3772132 R 1171376 CDS YP_007904729.1 482906169 3774002..3774358 1 NC_021151.1 COG3772 Phage-related lysozyme (muraminidase); phage endolysin 3774358 1171376003686 STU288_18210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage endolysin YP_007904729.1 3774002 D 1171376 CDS YP_007904730.1 482906170 complement(3774364..3774966) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative transcriptional regulator 3774966 1171376003687 STU288_18215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904730.1 3774364 R 1171376 CDS YP_007904731.1 482906171 3775597..3776496 1 NC_021151.1 COG0583 Transcriptional regulator; putative transcriptional regulator 3776496 1171376003688 STU288_18220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904731.1 3775597 D 1171376 CDS YP_007904732.1 482906172 3776569..3777597 1 NC_021151.1 COG1295 Predicted membrane protein; ribonuclease 3777597 1171376003689 STU288_18225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease YP_007904732.1 3776569 D 1171376 CDS YP_007904733.1 482906173 3777948..3779270 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Proline/betaine transporter Proline porter II 3779270 1171376003690 STU288_18230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Proline/betaine transporter Proline porter II YP_007904733.1 3777948 D 1171376 CDS YP_007904734.1 482906174 complement(3779310..3781370) 1 NC_021151.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis; hypothetical protein 3781370 1171376003691 STU288_18235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904734.1 3779310 R 1171376 CDS YP_007904735.1 482906175 complement(3781480..3782247) 1 NC_021151.1 COG2200 FOG: EAL domain; cyclic-di-GMP phosphodiesterase 3782247 1171376003692 STU288_18240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cyclic-di-GMP phosphodiesterase YP_007904735.1 3781480 R 1171376 CDS YP_007904736.1 482906176 3782476..3783405 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; ketodeoxygluconokinase KdgK 3783405 1171376003693 STU288_18245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ketodeoxygluconokinase KdgK YP_007904736.1 3782476 D 1171376 CDS YP_007904737.1 482906177 complement(3783459..3784946) 1 NC_021151.1 COG0612 Predicted Zn-dependent peptidases; putative zinc protease pqqL 3784946 1171376003694 STU288_18250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative zinc protease pqqL YP_007904737.1 3783459 R 1171376 CDS YP_007904738.1 482906178 complement(3785166..3786452) 1 NC_021151.1 COG1301 Na+/H+-dicarboxylate symporters; C4-dicarboxylate transporter DctA 3786452 1171376003695 STU288_18255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 C4-dicarboxylate transporter DctA YP_007904738.1 3785166 R 1171376 CDS YP_007904739.1 482906179 complement(3786610..3788616) 1 NC_021151.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 3788616 1171376003696 STU288_18260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diguanylate cyclase YP_007904739.1 3786610 R 1171376 CDS YP_007904740.1 482906180 complement(3788790..3792332) 1 NC_021151.1 COG0457 FOG: TPR repeat; cellulose synthase subunit BcsC 3792332 1171376003697 STU288_18265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cellulose synthase subunit BcsC YP_007904740.1 3788790 R 1171376 CDS YP_007904741.1 482906181 complement(3792314..3793420) 1 NC_021151.1 COG3405 Endoglucanase Y; endo-1,4-D-glucanase 3793420 1171376003698 STU288_18270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endo-1,4-D-glucanase YP_007904741.1 3792314 R 1171376 CDS YP_007904742.1 482906182 complement(3793427..3795727) 1 NC_021151.1 cellulose synthase regulator protein 3795727 1171376003699 STU288_18275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cellulose synthase regulator protein YP_007904742.1 3793427 R 1171376 CDS YP_007904743.1 482906183 complement(3795738..3798362) 1 NC_021151.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; cellulose synthase catalytic subunit 3798362 bcsA 1171376003700 bcsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cellulose synthase catalytic subunit YP_007904743.1 3795738 R 1171376 CDS YP_007904744.1 482906184 complement(3798359..3799111) 1 NC_021151.1 COG1192 ATPases involved in chromosome partitioning; cell division protein 3799111 1171376003701 STU288_18285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell division protein YP_007904744.1 3798359 R 1171376 CDS YP_007904745.1 482906185 complement(3799112..3799315) 1 NC_021151.1 hypothetical protein 3799315 1171376003702 STU288_18290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904745.1 3799112 R 1171376 CDS YP_007904746.1 482906186 3799560..3801131 1 NC_021151.1 cellulose biosynthesis protein BcsE 3801131 1171376003703 STU288_18295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cellulose biosynthesis protein BcsE YP_007904746.1 3799560 D 1171376 CDS YP_007904747.1 482906187 3801128..3801319 1 NC_021151.1 hypothetical protein 3801319 1171376003704 STU288_18300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904747.1 3801128 D 1171376 CDS YP_007904748.1 482906188 3801316..3802995 1 NC_021151.1 putative inner membrane protein 3802995 1171376003705 STU288_18305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904748.1 3801316 D 1171376 CDS YP_007904749.1 482906189 complement(3803077..3803184) 1 NC_021151.1 Small toxic polypeptide ldrD 3803184 1171376003706 STU288_18310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Small toxic polypeptide ldrD YP_007904749.1 3803077 R 1171376 CDS YP_007904750.1 482906190 3803569..3803709 1 NC_021151.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; Cystathionine gamma-lyase Gamma-cystathionase 3803709 1171376003707 STU288_18315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cystathionine gamma-lyase Gamma-cystathionase YP_007904750.1 3803569 D 1171376 CDS YP_007904751.1 482906191 3803827..3805125 1 NC_021151.1 COG0814 Amino acid permeases; Serine transporter 3805125 1171376003708 STU288_18320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Serine transporter YP_007904751.1 3803827 D 1171376 CDS YP_007904754.1 482906194 complement(3807230..3808132) 1 NC_021151.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter 3808132 1171376003710 STU288_18335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptide transporter YP_007904754.1 3807230 R 1171376 CDS YP_007904755.1 482906195 complement(3808142..3809161) 1 NC_021151.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter permease DppB 3809161 1171376003711 STU288_18340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptide transporter permease DppB YP_007904755.1 3808142 R 1171376 CDS YP_007904756.1 482906196 complement(3809318..3810925) 1 NC_021151.1 COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide ABC transporter periplasmic substrate-binding protein DppA 3810925 1171376003712 STU288_18345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dipeptide ABC transporter periplasmic substrate-binding protein DppA YP_007904756.1 3809318 R 1171376 CDS YP_007904757.1 482906197 complement(3811481..3812806) 1 NC_021151.1 COG2233 Xanthine/uracil permeases; xanthine permease 3812806 1171376003713 STU288_18350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xanthine permease YP_007904757.1 3811481 R 1171376 CDS YP_007904758.1 482906198 complement(3812864..3813988) 1 NC_021151.1 hypothetical protein 3813988 1171376003714 STU288_18355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904758.1 3812864 R 1171376 CDS YP_007904759.1 482906199 3814138..3815145 1 NC_021151.1 COG1609 Transcriptional regulators; putative regulatory protein 3815145 1171376003715 STU288_18360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007904759.1 3814138 D 1171376 CDS YP_007904760.1 482906200 complement(3815472..3817163) 1 NC_021151.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; phosphoethanolamine transferase 3817163 1171376003717 STU288_18365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoethanolamine transferase YP_007904760.1 3815472 R 1171376 CDS YP_007904761.1 482906201 complement(3817381..3817908) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; long polar fimbrial protein LpfE 3817908 1171376003718 STU288_18370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long polar fimbrial protein LpfE YP_007904761.1 3817381 R 1171376 CDS YP_007904762.1 482906202 complement(3817914..3818993) 1 NC_021151.1 long polar fimbrial protein LpfD 3818993 1171376003719 STU288_18375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long polar fimbrial protein LpfD YP_007904762.1 3817914 R 1171376 CDS YP_007904763.1 482906203 complement(3819011..3821539) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; long polar fimbrial outer membrane usher protein LpfC 3821539 1171376003720 STU288_18380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long polar fimbrial outer membrane usher protein LpfC YP_007904763.1 3819011 R 1171376 CDS YP_007904764.1 482906204 complement(3821562..3822260) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; long polar fimbrial chaperone LpfB 3822260 1171376003721 STU288_18385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long polar fimbrial chaperone LpfB YP_007904764.1 3821562 R 1171376 CDS YP_007904765.1 482906205 complement(3822345..3822869) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; long polar fimbrial protein LpfA 3822869 1171376003722 STU288_18390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 long polar fimbrial protein LpfA YP_007904765.1 3822345 R 1171376 CDS YP_007904766.1 482906206 complement(3823387..3824091) 1 NC_021151.1 Lipase 3824091 1171376003723 STU288_18395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Lipase YP_007904766.1 3823387 R 1171376 CDS YP_007904767.1 482906207 3824248..3824829 1 NC_021151.1 COG2818 3-methyladenine DNA glycosylase; 3-methyl-adenine DNA glycosylase I 3824829 1171376003724 STU288_18400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-methyl-adenine DNA glycosylase I YP_007904767.1 3824248 D 1171376 CDS YP_007904768.1 482906208 3824807..3825247 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 3825247 1171376003725 STU288_18405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007904768.1 3824807 D 1171376 CDS YP_007904769.1 482906209 complement(3825216..3827549) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase 3827549 bisC 1171376003726 bisC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biotin sulfoxide reductase YP_007904769.1 3825216 R 1171376 CDS YP_007904770.1 482906210 3827702..3828364 1 NC_021151.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 3828364 1171376003727 STU288_18415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein YP_007904770.1 3827702 D 1171376 CDS YP_007904771.1 482906211 3828583..3829557 1 NC_021151.1 COG1052 Lactate dehydrogenase and related dehydrogenases; bifunctional glyoxylate/hydroxypyruvate reductase B 3829557 1171376003728 STU288_18420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional glyoxylate/hydroxypyruvate reductase B YP_007904771.1 3828583 D 1171376 CDS YP_007904772.1 482906212 complement(3829607..3830317) 1 NC_021151.1 hypothetical protein 3830317 1171376003729 STU288_18425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904772.1 3829607 R 1171376 CDS YP_007904773.1 482906213 3830756..3831046 1 NC_021151.1 COG2944 Predicted transcriptional regulator; transcriptional regulator 3831046 1171376003730 STU288_18430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904773.1 3830756 D 1171376 CDS YP_007904774.1 482906214 3831335..3831547 1 NC_021151.1 COG1278 Cold shock proteins; cold shock protein 3831547 1171376003731 STU288_18435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cold shock protein YP_007904774.1 3831335 D 1171376 CDS YP_007904775.1 482906215 3831721..3832260 1 NC_021151.1 Putative periplasmic or exported protein 3832260 1171376003732 STU288_18440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative periplasmic or exported protein YP_007904775.1 3831721 D 1171376 CDS YP_007904776.1 482906216 complement(3832632..3833117) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 3833117 1171376003733 STU288_18445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acetyltransferase YP_007904776.1 3832632 R 1171376 CDS YP_007904777.1 482906217 complement(3833105..3833371) 1 NC_021151.1 COG4453 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3833371 1171376003734 STU288_18450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904777.1 3833105 R 1171376 CDS YP_007904778.1 482906218 complement(3833570..3834037) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 3834037 1171376003735 STU288_18455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007904778.1 3833570 R 1171376 CDS YP_007904779.1 482906219 complement(3834209..3834400) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; transposase 3834400 1171376003736 STU288_18460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase YP_007904779.1 3834209 R 1171376 CDS YP_007904780.1 482906220 complement(3834666..3836735) 1 NC_021151.1 COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA ligase subunit beta 3836735 glyS 1171376003737 glyS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycyl-tRNA ligase subunit beta YP_007904780.1 3834666 R 1171376 CDS YP_007904781.1 482906221 complement(3836745..3837656) 1 NC_021151.1 COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA ligase subunit alpha 3837656 glyQ 1171376003738 glyQ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycyl-tRNA ligase subunit alpha YP_007904781.1 3836745 R 1171376 CDS YP_007904782.1 482906222 complement(3837795..3838097) 1 NC_021151.1 YsaB-like lipoprotein 3838097 1171376003739 STU288_18475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YsaB-like lipoprotein YP_007904782.1 3837795 R 1171376 CDS YP_007904783.1 482906223 3838263..3839258 1 NC_021151.1 COG3274 Uncharacterized protein conserved in bacteria; O-acetyltransferase 3839258 1171376003740 STU288_18480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-acetyltransferase YP_007904783.1 3838263 D 1171376 CDS YP_007904784.1 482906224 complement(3839281..3839634) 1 NC_021151.1 Inner membrane protein yiaA 3839634 1171376003741 STU288_18485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yiaA YP_007904784.1 3839281 R 1171376 CDS YP_007904785.1 482906225 complement(3839809..3841263) 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; xylulokinase 3841263 1171376003742 STU288_18490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xylulokinase YP_007904785.1 3839809 R 1171376 CDS YP_007904786.1 482906226 complement(3841363..3842685) 1 NC_021151.1 COG2115 Xylose isomerase; xylose isomerase 3842685 1171376003743 STU288_18495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xylose isomerase YP_007904786.1 3841363 R 1171376 CDS YP_007904787.1 482906227 3843048..3844226 1 NC_021151.1 COG1609 Transcriptional regulators; xylose operon transcriptional activator 3844226 1171376003744 STU288_18500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xylose operon transcriptional activator YP_007904787.1 3843048 D 1171376 CDS YP_007904788.1 482906228 complement(3844287..3845111) 1 NC_021151.1 COG2992 Uncharacterized FlgJ-related protein; hypothetical protein 3845111 1171376003745 STU288_18505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904788.1 3844287 R 1171376 CDS YP_007904789.1 482906229 3845427..3847454 1 NC_021151.1 COG0366 Glycosidases; alpha-amylase 3847454 malS 1171376003746 malS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-amylase YP_007904789.1 3845427 D 1171376 CDS YP_007904790.1 482906230 3847628..3848878 1 NC_021151.1 COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; valine--pyruvate transaminase 3848878 avtA 1171376003747 avtA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 valine--pyruvate transaminase YP_007904790.1 3847628 D 1171376 CDS YP_007904791.1 482906231 complement(3848915..3849388) 1 NC_021151.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; electron-transport protein 3849388 1171376003748 STU288_18520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 electron-transport protein YP_007904791.1 3848915 R 1171376 CDS YP_007904792.1 482906232 complement(3849505..3850305) 1 NC_021151.1 COG1414 Transcriptional regulator; transcriptional regulator 3850305 1171376003749 STU288_18525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904792.1 3849505 R 1171376 CDS YP_007904793.1 482906233 3850535..3851533 1 NC_021151.1 COG2055 Malate/L-lactate dehydrogenases; 2,3-diketo-L-gulonate reductase 3851533 1171376003750 STU288_18530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,3-diketo-L-gulonate reductase YP_007904793.1 3850535 D 1171376 CDS YP_007904794.1 482906234 3851545..3852009 1 NC_021151.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 3852009 1171376003751 STU288_18535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904794.1 3851545 D 1171376 CDS YP_007904795.1 482906235 3852033..3852965 1 NC_021151.1 hypothetical protein 3852965 1171376003752 STU288_18540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904795.1 3852033 D 1171376 CDS YP_007904796.1 482906236 3853104..3853577 1 NC_021151.1 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3853577 1171376003753 STU288_18545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM YP_007904796.1 3853104 D 1171376 CDS YP_007904797.1 482906237 3853580..3854857 1 NC_021151.1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; L-dehydroascorbate transporter large permease subunit 3854857 1171376003754 STU288_18550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-dehydroascorbate transporter large permease subunit YP_007904797.1 3853580 D 1171376 CDS YP_007904798.1 482906238 3854869..3855855 1 NC_021151.1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein 3855855 1171376003755 STU288_18555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein YP_007904798.1 3854869 D 1171376 CDS YP_007904799.1 482906239 3855859..3857355 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; L-xylulose/3-keto-L-gulonate kinase 3857355 1171376003756 STU288_18560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-xylulose/3-keto-L-gulonate kinase YP_007904799.1 3855859 D 1171376 CDS YP_007904800.1 482906240 3857352..3858014 1 NC_021151.1 COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 3858014 sgbH 1171376003757 sgbH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-keto-L-gulonate-6-phosphate decarboxylase YP_007904800.1 3857352 D 1171376 CDS YP_007904801.1 482906241 3858007..3858867 1 NC_021151.1 COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 3858867 1171376003758 STU288_18570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-xylulose 5-phosphate 3-epimerase YP_007904801.1 3858007 D 1171376 CDS YP_007904802.1 482906242 3858861..3859556 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 3859556 sgbE 1171376003759 sgbE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-ribulose-5-phosphate 4-epimerase YP_007904802.1 3858861 D 1171376 CDS YP_007904803.1 482906243 complement(3859717..3860532) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator 3860532 1171376003760 STU288_18580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007904803.1 3859717 R 1171376 CDS YP_007904804.1 482906244 3860796..3862751 1 NC_021151.1 COG3533 Uncharacterized protein conserved in bacteria; hypothetical protein 3862751 1171376003761 STU288_18585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904804.1 3860796 D 1171376 CDS YP_007904805.1 482906245 complement(3862869..3864407) 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase B 3864407 1171376003762 STU288_18590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldehyde dehydrogenase B YP_007904805.1 3862869 R 1171376 CDS YP_007904806.1 482906246 3864576..3865457 1 NC_021151.1 COG1940 Transcriptional regulator/sugar kinase; sugar kinase 3865457 1171376003763 STU288_18595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar kinase YP_007904806.1 3864576 D 1171376 CDS YP_007904807.1 482906247 complement(3865742..3867592) 1 NC_021151.1 COG3276 Selenocysteine-specific translation elongation factor; selenocysteinyl-tRNA-specific translation factor 3867592 1171376003764 STU288_18600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 selenocysteinyl-tRNA-specific translation factor YP_007904807.1 3865742 R 1171376 CDS YP_007904808.1 482906248 complement(3867589..3868980) 1 NC_021151.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 3868980 1171376003765 STU288_18605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 selenocysteine synthase YP_007904808.1 3867589 R 1171376 CDS YP_007904809.1 482906249 complement(3869079..3869687) 1 NC_021151.1 COG0625 Glutathione S-transferase; glutathione S-transferase 3869687 1171376003766 STU288_18610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione S-transferase YP_007904809.1 3869079 R 1171376 CDS YP_007904810.1 482906250 3870163..3872079 1 NC_021151.1 COG2213 Phosphotransferase system, mannitol-specific IIBC component; PTS system mannitol-specific transporter subunit IICBA 3872079 1171376003767 STU288_18615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannitol-specific transporter subunit IICBA YP_007904810.1 3870163 D 1171376 CDS YP_007904811.1 482906251 3872300..3873448 1 NC_021151.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 3873448 1171376003768 STU288_18620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannitol-1-phosphate 5-dehydrogenase YP_007904811.1 3872300 D 1171376 CDS YP_007904812.1 482906252 3873445..3874035 1 NC_021151.1 COG3722 Transcriptional regulator; mannitol repressor protein 3874035 mtlR 1171376003769 mtlR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mannitol repressor protein YP_007904812.1 3873445 D 1171376 CDS YP_007904813.1 482906253 complement(3874045..3874254) 1 NC_021151.1 hypothetical protein 3874254 1171376003770 STU288_18630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904813.1 3874045 R 1171376 CDS YP_007904814.1 482906254 3874545..3874907 1 NC_021151.1 COG0323 DNA mismatch repair enzyme (predicted ATPase); hypothetical protein 3874907 1171376003771 STU288_18635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904814.1 3874545 D 1171376 CDS YP_007904815.1 482906255 3875397..3876080 1 NC_021151.1 hypothetical protein 3876080 1171376003772 STU288_18640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904815.1 3875397 D 1171376 CDS YP_007904816.1 482906256 3880808..3882463 1 NC_021151.1 COG1620 L-lactate permease; L-lactate permease 3882463 1171376003773 STU288_18655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-lactate permease YP_007904816.1 3880808 D 1171376 CDS YP_007904817.1 482906257 3882460..3883236 1 NC_021151.1 COG2186 Transcriptional regulators; DNA-binding transcriptional repressor LldR 3883236 1171376003774 STU288_18660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor LldR YP_007904817.1 3882460 D 1171376 CDS YP_007904818.1 482906258 3883233..3884423 1 NC_021151.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate dehydrogenase 3884423 lldD 1171376003775 lldD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-lactate dehydrogenase YP_007904818.1 3883233 D 1171376 CDS YP_007904819.1 482906259 3884487..3884960 1 NC_021151.1 COG0219 Predicted rRNA methylase (SpoU class); rRNA methylase 3884960 1171376003776 STU288_18670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rRNA methylase YP_007904819.1 3884487 D 1171376 CDS YP_007904820.1 482906260 complement(3885028..3886083) 1 NC_021151.1 COG1609 Transcriptional regulators; lacI family transcriptional regulator regulator 3886083 1171376003777 STU288_18675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lacI family transcriptional regulator regulator YP_007904820.1 3885028 R 1171376 CDS YP_007904821.1 482906261 3886351..3887547 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; racemase 3887547 1171376003778 STU288_18680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 racemase YP_007904821.1 3886351 D 1171376 CDS YP_007904822.1 482906262 3887621..3888931 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative glucarate transporter D-glucarate permease 3888931 1171376003779 STU288_18685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glucarate transporter D-glucarate permease YP_007904822.1 3887621 D 1171376 CDS YP_007904823.1 482906263 complement(3889014..3889835) 1 NC_021151.1 COG1045 Serine acetyltransferase; serine acetyltransferase 3889835 cysE 1171376003780 cysE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine acetyltransferase YP_007904823.1 3889014 R 1171376 CDS YP_007904824.1 482906264 complement(3889913..3890932) 1 NC_021151.1 COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3890932 gpsA 1171376003781 gpsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_007904824.1 3889913 R 1171376 CDS YP_007904825.1 482906265 complement(3890932..3891399) 1 NC_021151.1 COG1952 Preprotein translocase subunit SecB; preprotein translocase subunit SecB 3891399 1171376003782 STU288_18700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecB YP_007904825.1 3890932 R 1171376 CDS YP_007904826.1 482906266 complement(3891443..3891694) 1 NC_021151.1 COG0695 Glutaredoxin and related proteins; glutaredoxin 3 3891694 1171376003783 STU288_18705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutaredoxin 3 YP_007904826.1 3891443 R 1171376 CDS YP_007904827.1 482906267 complement(3891781..3892212) 1 NC_021151.1 COG0607 Rhodanese-related sulfurtransferase; UPF0176 protein 3892212 1171376003784 STU288_18710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0176 protein YP_007904827.1 3891781 R 1171376 CDS YP_007904828.1 482906268 3892460..3894004 1 NC_021151.1 COG0696 Phosphoglyceromutase; phosphoglyceromutase 3894004 1171376003785 STU288_18715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglyceromutase YP_007904828.1 3892460 D 1171376 CDS YP_007904829.1 482906269 3894014..3895297 1 NC_021151.1 COG4942 Membrane-bound metallopeptidase; AmiB activator 3895297 1171376003786 STU288_18720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AmiB activator YP_007904829.1 3894014 D 1171376 CDS YP_007904830.1 482906270 3895301..3896263 1 NC_021151.1 COG2861 Uncharacterized protein conserved in bacteria; divergent polysaccharide deacetylase 3896263 1171376003787 STU288_18725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 divergent polysaccharide deacetylase YP_007904830.1 3895301 D 1171376 CDS YP_007904831.1 482906271 complement(3896250..3897284) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase 3897284 1171376003788 STU288_18730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycosyl transferase YP_007904831.1 3896250 R 1171376 CDS YP_007904832.1 482906272 complement(3897778..3898803) 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-threonine 3-dehydrogenase 3898803 tdh 1171376003789 tdh Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-threonine 3-dehydrogenase YP_007904832.1 3897778 R 1171376 CDS YP_007904833.1 482906273 complement(3898813..3900009) 1 NC_021151.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 2-amino-3-ketobutyrate coenzyme A ligase 3900009 1171376003790 STU288_18740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-amino-3-ketobutyrate coenzyme A ligase YP_007904833.1 3898813 R 1171376 CDS YP_007904834.1 482906274 3900212..3901144 1 NC_021151.1 COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-mannoheptose-6-epimerase 3901144 rfaD 1171376003791 rfaD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ADP-L-glycero-D-mannoheptose-6-epimerase YP_007904834.1 3900212 D 1171376 CDS YP_007904835.1 482906275 3901147..3902193 1 NC_021151.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyltransferase II 3902193 1171376003792 STU288_18750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ADP-heptose:LPS heptosyltransferase II YP_007904835.1 3901147 D 1171376 CDS YP_007904836.1 482906276 3902193..3903146 1 NC_021151.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyl transferase I 3903146 1171376003793 STU288_18755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ADP-heptose:LPS heptosyl transferase I YP_007904836.1 3902193 D 1171376 CDS YP_007904837.1 482906277 3903186..3904400 1 NC_021151.1 O-antigen ligase RfaL 3904400 1171376003794 STU288_18760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen ligase RfaL YP_007904837.1 3903186 D 1171376 CDS YP_007904838.1 482906278 complement(3904457..3905602) 1 NC_021151.1 COG0438 Glycosyltransferase; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3905602 1171376003795 STU288_18765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_007904838.1 3904457 R 1171376 CDS YP_007904839.1 482906279 complement(3905703..3906512) 1 NC_021151.1 lipopolysaccharide core biosynthesis protein 3906512 1171376003796 STU288_18770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide core biosynthesis protein YP_007904839.1 3905703 R 1171376 CDS YP_007904840.1 482906280 complement(3906662..3907360) 1 NC_021151.1 COG1527 Archaeal/vacuolar-type H+-ATPase subunit C; lipopolysaccharide core heptose(II) kinase RfaY 3907360 1171376003797 STU288_18775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide core heptose(II) kinase RfaY YP_007904840.1 3906662 R 1171376 CDS YP_007904841.1 482906281 complement(3907383..3908393) 1 NC_021151.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,2-glucosyltransferase 3908393 1171376003798 STU288_18780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide 1,2-glucosyltransferase YP_007904841.1 3907383 R 1171376 CDS YP_007904842.1 482906282 complement(3908411..3909424) 1 NC_021151.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,3-galactosyltransferase 3909424 1171376003799 STU288_18785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide 1,3-galactosyltransferase YP_007904842.1 3908411 R 1171376 CDS YP_007904843.1 482906283 complement(3909430..3910509) 1 NC_021151.1 COG0438 Glycosyltransferase; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3910509 1171376003800 STU288_18790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_007904843.1 3909430 R 1171376 CDS YP_007904844.1 482906284 complement(3910579..3910788) 1 NC_021151.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative inner membrane protein 3910788 1171376003801 STU288_18795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904844.1 3910579 R 1171376 CDS YP_007904845.1 482906285 complement(3910844..3911641) 1 NC_021151.1 lipopolysaccharide core heptose(I) kinase RfaP 3911641 1171376003802 STU288_18800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide core heptose(I) kinase RfaP YP_007904845.1 3910844 R 1171376 CDS YP_007904846.1 482906286 complement(3911634..3912758) 1 NC_021151.1 COG0438 Glycosyltransferase; glucosyltransferase I RfaG 3912758 1171376003803 STU288_18805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucosyltransferase I RfaG YP_007904846.1 3911634 R 1171376 CDS YP_007904847.1 482906287 complement(3912755..3913789) 1 NC_021151.1 COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide core heptosyltransferase RfaQ 3913789 1171376003804 STU288_18810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide core heptosyltransferase RfaQ YP_007904847.1 3912755 R 1171376 CDS YP_007904848.1 482906288 3914234..3915511 1 NC_021151.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 3915511 1171376003805 STU288_18815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-deoxy-D-manno-octulosonic-acid transferase YP_007904848.1 3914234 D 1171376 CDS YP_007904849.1 482906289 3915520..3915999 1 NC_021151.1 COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 3915999 coaD 1171376003806 coaD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphopantetheine adenylyltransferase YP_007904849.1 3915520 D 1171376 CDS YP_007904850.1 482906290 complement(3916027..3916836) 1 NC_021151.1 COG0266 Formamidopyrimidine-DNA glycosylase; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 3916836 1171376003807 STU288_18825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase YP_007904850.1 3916027 R 1171376 CDS YP_007904851.1 482906291 complement(3916934..3917101) 1 NC_021151.1 COG0267 Ribosomal protein L33; 50S ribosomal protein L33 3917101 1171376003808 STU288_18830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L33 YP_007904851.1 3916934 R 1171376 CDS YP_007904852.1 482906292 complement(3917122..3917358) 1 NC_021151.1 COG0227 Ribosomal protein L28; 50S ribosomal protein L28 3917358 rpmB 1171376003809 rpmB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L28 YP_007904852.1 3917122 R 1171376 CDS YP_007904853.1 482906293 complement(3917576..3918241) 1 NC_021151.1 COG2003 DNA repair proteins; hypothetical protein 3918241 1171376003810 STU288_18840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904853.1 3917576 R 1171376 CDS YP_007904854.1 482906294 3918417..3919637 1 NC_021151.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3919637 1171376003811 STU288_18845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_007904854.1 3918417 D 1171376 CDS YP_007904855.1 482906295 3919618..3920073 1 NC_021151.1 COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 3920073 dut 1171376003812 dut Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_007904855.1 3919618 D 1171376 CDS YP_007904856.1 482906296 3920181..3920777 1 NC_021151.1 COG1309 Transcriptional regulator; division inhibitor protein 3920777 slmA 1171376003813 slmA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 division inhibitor protein YP_007904856.1 3920181 D 1171376 CDS YP_007904857.1 482906297 complement(3920855..3921496) 1 NC_021151.1 COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 3921496 pyrE 1171376003814 pyrE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 orotate phosphoribosyltransferase YP_007904857.1 3920855 R 1171376 CDS YP_007904858.1 482906298 complement(3921575..3922291) 1 NC_021151.1 COG0689 RNase PH; ribonuclease PH 3922291 rph 1171376003815 rph Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease PH YP_007904858.1 3921575 R 1171376 CDS YP_007904859.1 482906299 3922417..3923280 1 NC_021151.1 COG1561 Uncharacterized stress-induced protein; hypothetical protein 3923280 1171376003816 STU288_18870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904859.1 3922417 D 1171376 CDS YP_007904860.1 482906300 complement(3923330..3924232) 1 NC_021151.1 COG0583 Transcriptional regulator; regulatory protein 3924232 1171376003817 STU288_18875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein YP_007904860.1 3923330 R 1171376 CDS YP_007904861.1 482906301 3924306..3925187 1 NC_021151.1 COG0491 Zn-dependent hydrolases, including glyoxylases; putative Zn-dependent hydrolase 3925187 1171376003818 STU288_18880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative Zn-dependent hydrolase YP_007904861.1 3924306 D 1171376 CDS YP_007904862.1 482906302 3925132..3925314 1 NC_021151.1 hypothetical protein 3925314 1171376003819 STU288_18885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904862.1 3925132 D 1171376 CDS YP_007904863.1 482906303 3925438..3926055 1 NC_021151.1 COG2860 Predicted membrane protein; UPF0126 membrane protein 3926055 1171376003820 STU288_18890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0126 membrane protein YP_007904863.1 3925438 D 1171376 CDS YP_007904864.1 482906304 complement(3926052..3927737) 1 NC_021151.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigB 3927737 ligB 1171376003821 ligB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NAD-dependent DNA ligase LigB YP_007904864.1 3926052 R 1171376 CDS YP_007904865.1 482906305 3927994..3928617 1 NC_021151.1 COG0194 Guanylate kinase; guanylate kinase 3928617 gmk 1171376003822 gmk Salmonella enterica subsp. enterica serovar Typhimurium str. U288 guanylate kinase YP_007904865.1 3927994 D 1171376 CDS YP_007904866.1 482906306 3928672..3928947 1 NC_021151.1 COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 3928947 1171376003823 STU288_18905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-directed RNA polymerase subunit omega YP_007904866.1 3928672 D 1171376 CDS YP_007904867.1 482906307 3928966..3931077 1 NC_021151.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3931077 1171376003824 STU288_18910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_007904867.1 3928966 D 1171376 CDS YP_007904868.1 482906308 3931082..3931771 1 NC_021151.1 COG0566 rRNA methylases; tRNA guanosine-2'-O-methyltransferase 3931771 1171376003825 STU288_18915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA guanosine-2'-O-methyltransferase YP_007904868.1 3931082 D 1171376 CDS YP_007904869.1 482906309 3931777..3933858 1 NC_021151.1 COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 3933858 1171376003826 STU288_18920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent DNA helicase RecG YP_007904869.1 3931777 D 1171376 CDS YP_007904870.1 482906310 complement(3933861..3934712) 1 NC_021151.1 putative cytoplasmic protein 3934712 1171376003827 STU288_18925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904870.1 3933861 R 1171376 CDS YP_007904871.1 482906311 complement(3934715..3935920) 1 NC_021151.1 COG0786 Na+/glutamate symporter; sodium/glutamate symport carrier protein GltS 3935920 1171376003828 STU288_18930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sodium/glutamate symport carrier protein GltS YP_007904871.1 3934715 R 1171376 CDS YP_007904872.1 482906312 3936148..3937539 1 NC_021151.1 COG2233 Xanthine/uracil permeases; xanthine permease XanP 3937539 1171376003829 STU288_18935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xanthine permease XanP YP_007904872.1 3936148 D 1171376 CDS YP_007904873.1 482906313 3937660..3939369 1 NC_021151.1 putative inner membrane protein 3939369 1171376003830 STU288_18940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904873.1 3937660 D 1171376 CDS YP_007904874.1 482906314 complement(3939472..3941790) 1 NC_021151.1 COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase 3941790 1171376003831 STU288_18945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-glucosidase YP_007904874.1 3939472 R 1171376 CDS YP_007904875.1 482906315 complement(3941802..3943184) 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; transporter 3943184 1171376003832 STU288_18950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007904875.1 3941802 R 1171376 CDS YP_007904876.1 482906316 complement(3943883..3944227) 1 NC_021151.1 hypothetical protein 3944227 1171376003834 STU288_18955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904876.1 3943883 R 1171376 CDS YP_007904877.1 482906317 3944905..3946095 1 NC_021151.1 COG3950 Predicted ATP-binding protein involved in virulence; ATP-binding protein 3946095 1171376003835 STU288_18960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-binding protein YP_007904877.1 3944905 D 1171376 CDS YP_007904878.1 482906318 3946095..3946442 1 NC_021151.1 putative cytoplasmic protein 3946442 1171376003836 STU288_18965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007904878.1 3946095 D 1171376 CDS YP_007904879.1 482906319 3946629..3947666 1 NC_021151.1 COG3943 Virulence protein; Virulence protein RhuM family 3947666 1171376003837 STU288_18970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Virulence protein RhuM family YP_007904879.1 3946629 D 1171376 CDS YP_007904880.1 482906320 complement(3947778..3947951) 1 NC_021151.1 COG2963 Transposase and inactivated derivatives; putative transposase ykgN 3947951 1171376003838 STU288_18975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase ykgN YP_007904880.1 3947778 R 1171376 CDS YP_007904881.1 482906321 3948965..3949582 1 NC_021151.1 hypothetical protein 3949582 1171376003839 STU288_18980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904881.1 3948965 D 1171376 CDS YP_007904882.1 482906322 3949657..3952524 1 NC_021151.1 COG3468 Type V secretory pathway, adhesin AidA; autotransport protein MisL 3952524 1171376003840 STU288_18985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autotransport protein MisL YP_007904882.1 3949657 D 1171376 CDS YP_007904883.1 482906323 complement(3952619..3953083) 1 NC_021151.1 hypothetical protein 3953083 1171376003841 STU288_18990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904883.1 3952619 R 1171376 CDS YP_007904884.1 482906324 complement(3953094..3953858) 1 NC_021151.1 COG3710 DNA-binding winged-HTH domains; putative transcriptional regulator 3953858 1171376003842 STU288_18995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007904884.1 3953094 R 1171376 CDS YP_007904885.1 482906325 3954735..3955415 1 NC_021151.1 COG1335 Amidases related to nicotinamidase; Nicotinamidase family protein YcaC 3955415 1171376003843 STU288_19000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Nicotinamidase family protein YcaC YP_007904885.1 3954735 D 1171376 CDS YP_007904886.1 482906326 complement(3955644..3956123) 1 NC_021151.1 hypothetical protein 3956123 1171376003844 STU288_19005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904886.1 3955644 R 1171376 CDS YP_007904887.1 482906327 complement(3956324..3956416) 1 NC_021151.1 hypothetical protein 3956416 1171376003845 STU288_19010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904887.1 3956324 R 1171376 CDS YP_007904888.1 482906328 complement(3956438..3959164) 1 NC_021151.1 COG0474 Cation transport ATPase; magnesium-transporting ATPase 3959164 1171376003846 STU288_19015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 magnesium-transporting ATPase YP_007904888.1 3956438 R 1171376 CDS YP_007904889.1 482906329 complement(3959384..3960079) 1 NC_021151.1 COG1285 Uncharacterized membrane protein; magnesium transport protein MgtC 3960079 1171376003847 STU288_19020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 magnesium transport protein MgtC YP_007904889.1 3959384 R 1171376 CDS YP_007904890.1 482906330 3960588..3961490 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative permease 3961490 1171376003848 STU288_19025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007904890.1 3960588 D 1171376 CDS YP_007904891.1 482906331 complement(3961533..3962474) 1 NC_021151.1 hypothetical protein 3962474 1171376003849 STU288_19030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904891.1 3961533 R 1171376 CDS YP_007904892.1 482906332 complement(3962710..3963453) 1 NC_021151.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein 3963453 1171376003850 STU288_19035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904892.1 3962710 R 1171376 CDS YP_007904893.1 482906333 complement(3963440..3964549) 1 NC_021151.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; L-seryl-tRNA(Sec) selenium transferase-like protein 3964549 1171376003851 STU288_19040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-seryl-tRNA(Sec) selenium transferase-like protein YP_007904893.1 3963440 R 1171376 CDS YP_007904894.1 482906334 complement(3964553..3965410) 1 NC_021151.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; Mannose permease IID component PTS system 3965410 1171376003852 STU288_19045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Mannose permease IID component PTS system YP_007904894.1 3964553 R 1171376 CDS YP_007904895.1 482906335 complement(3965410..3966159) 1 NC_021151.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; N-acetylgalactosamine permease IIC component 1 PTS system N-acetylgalactosamine-specific EIIC component 1 3966159 1171376003853 STU288_19050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylgalactosamine permease IIC component 1 PTS system N-acetylgalactosamine-specific EIIC component 1 YP_007904895.1 3965410 R 1171376 CDS YP_007904896.1 482906336 complement(3966305..3966790) 1 NC_021151.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system transporter protein 3966790 1171376003854 STU288_19055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system transporter protein YP_007904896.1 3966305 R 1171376 CDS YP_007904897.1 482906337 complement(3966801..3967226) 1 NC_021151.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system fructose IIA component 3967226 1171376003855 STU288_19060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose IIA component YP_007904897.1 3966801 R 1171376 CDS YP_007904898.1 482906338 complement(3967445..3970243) 1 NC_021151.1 COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; sigma-54 dependent transcriptional regulator 3970243 1171376003856 STU288_19065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sigma-54 dependent transcriptional regulator YP_007904898.1 3967445 R 1171376 CDS YP_007904899.1 482906339 3970440..3970733 1 NC_021151.1 Putative secreted protein 3970733 1171376003857 STU288_19070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative secreted protein YP_007904899.1 3970440 D 1171376 CDS YP_007904900.1 482906340 3970839..3972221 1 NC_021151.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; Beta-glucosidase 3972221 1171376003858 STU288_19075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Beta-glucosidase YP_007904900.1 3970839 D 1171376 CDS YP_007904901.1 482906341 complement(3972281..3973474) 1 NC_021151.1 COG2814 Arabinose efflux permease; ribonucleoside transporter 3973474 nepI 1171376003859 nepI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonucleoside transporter YP_007904901.1 3972281 R 1171376 CDS YP_007904902.1 482906342 3973690..3974049 1 NC_021151.1 COG4737 Uncharacterized protein conserved in bacteria; hypothetical protein 3974049 1171376003860 STU288_19085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904902.1 3973690 D 1171376 CDS YP_007904903.1 482906343 3974033..3974356 1 NC_021151.1 COG2944 Predicted transcriptional regulator; DNA-binding protein 3974356 1171376003861 STU288_19090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding protein YP_007904903.1 3974033 D 1171376 CDS YP_007904904.1 482906344 complement(3974447..3974716) 1 NC_021151.1 COG1925 Phosphotransferase system, HPr-related proteins; Phosphotransferase system HPr enzyme in cluster with fructose-bisphosphate aldolase 3974716 1171376003862 STU288_19095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phosphotransferase system HPr enzyme in cluster with fructose-bisphosphate aldolase YP_007904904.1 3974447 R 1171376 CDS YP_007904905.1 482906345 complement(3974726..3975586) 1 NC_021151.1 COG0191 Fructose/tagatose bisphosphate aldolase; fructose-1,6-bisphosphate aldolase 3975586 gatY 1171376003863 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-1,6-bisphosphate aldolase YP_007904905.1 3974726 R 1171376 CDS YP_007904906.1 482906346 complement(3975649..3977133) 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; Carbohydrate kinase in cluster with fructose-bisphosphate aldolase 3977133 1171376003864 STU288_19105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Carbohydrate kinase in cluster with fructose-bisphosphate aldolase YP_007904906.1 3975649 R 1171376 CDS YP_007904907.1 482906347 complement(3977126..3978484) 1 NC_021151.1 COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system, galactitol-specific IIC component 3978484 1171376003865 STU288_19110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system, galactitol-specific IIC component YP_007904907.1 3977126 R 1171376 CDS YP_007904908.1 482906348 complement(3978560..3978847) 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system transporter subunit IIB 3978847 1171376003866 STU288_19115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system transporter subunit IIB YP_007904908.1 3978560 R 1171376 CDS YP_007904909.1 482906349 complement(3978844..3979317) 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); phosphoenolpyruvate-dependent sugar phosphotransferase system, eiia 2 3979317 1171376003867 STU288_19120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate-dependent sugar phosphotransferase system, eiia 2 YP_007904909.1 3978844 R 1171376 CDS YP_007904910.1 482906350 complement(3979335..3980078) 1 NC_021151.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 3980078 1171376003868 STU288_19125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007904910.1 3979335 R 1171376 CDS YP_007904911.1 482906351 complement(3980431..3980883) 1 NC_021151.1 putative inner membrane protein 3980883 1171376003869 STU288_19130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007904911.1 3980431 R 1171376 CDS YP_007904912.1 482906352 complement(3981076..3982467) 1 NC_021151.1 COG2271 Sugar phosphate permease; sugar phosphate antiporter 3982467 uhpT 1171376003870 uhpT Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar phosphate antiporter YP_007904912.1 3981076 R 1171376 CDS YP_007904913.1 482906353 complement(3982610..3983938) 1 NC_021151.1 COG2271 Sugar phosphate permease; regulatory protein UhpC 3983938 1171376003871 STU288_19140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory protein UhpC YP_007904913.1 3982610 R 1171376 CDS YP_007904914.1 482906354 complement(3983948..3985450) 1 NC_021151.1 COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; sensory histidine kinase UhpB 3985450 1171376003872 STU288_19145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensory histidine kinase UhpB YP_007904914.1 3983948 R 1171376 CDS YP_007904915.1 482906355 complement(3985450..3986040) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator UhpA 3986040 1171376003873 STU288_19150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator UhpA YP_007904915.1 3985450 R 1171376 CDS YP_007904916.1 482906356 complement(3986115..3987128) 1 NC_021151.1 hypothetical protein 3987128 1171376003874 STU288_19155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904916.1 3986115 R 1171376 CDS YP_007904917.1 482906357 complement(3987140..3988456) 1 NC_021151.1 COG0738 Fucose permease; putative glucose/galactose transporter 3988456 1171376003875 STU288_19160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative glucose/galactose transporter YP_007904917.1 3987140 R 1171376 CDS YP_007904918.1 482906358 complement(3988487..3989407) 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; putative carbohydrate kinase 3989407 1171376003876 STU288_19165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative carbohydrate kinase YP_007904918.1 3988487 R 1171376 CDS YP_007904919.1 482906359 3989732..3990517 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; Deoxyribose operon repressor, DeoR family protein 3990517 1171376003877 STU288_19170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Deoxyribose operon repressor, DeoR family protein YP_007904919.1 3989732 D 1171376 CDS YP_007904920.1 482906360 complement(3990519..3990809) 1 NC_021151.1 COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 1 regulatory subunit 3990809 1171376003878 STU288_19175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase 1 regulatory subunit YP_007904920.1 3990519 R 1171376 CDS YP_007904921.1 482906361 complement(3990813..3992501) 1 NC_021151.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase catalytic subunit 3992501 1171376003879 STU288_19180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase catalytic subunit YP_007904921.1 3990813 R 1171376 CDS YP_007904922.1 482906362 3993340..3993429 1 NC_021151.1 toxic peptide TisB 3993429 1171376003880 STU288_19185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 toxic peptide TisB YP_007904922.1 3993340 D 1171376 CDS YP_007904923.1 482906363 3993549..3994382 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; integral membrane protein 3994382 1171376003881 STU288_19190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integral membrane protein YP_007904923.1 3993549 D 1171376 CDS YP_007904924.1 482906364 3994585..3995769 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein D 3995769 emrD 1171376003882 emrD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug resistance protein D YP_007904924.1 3994585 D 1171376 CDS YP_007904925.1 482906365 complement(3995696..3996781) 1 NC_021151.1 hypothetical protein 3996781 1171376003883 STU288_19200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904925.1 3995696 R 1171376 CDS YP_007904926.1 482906366 complement(3996845..3997768) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator DsdC 3997768 1171376003884 STU288_19205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator DsdC YP_007904926.1 3996845 R 1171376 CDS YP_007904927.1 482906367 3997994..3999331 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; permease DsdX 3999331 1171376003885 STU288_19210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 permease DsdX YP_007904927.1 3997994 D 1171376 CDS YP_007904928.1 482906368 3999349..4000671 1 NC_021151.1 COG3048 D-serine dehydratase; D-serine dehydratase 4000671 1171376003886 STU288_19215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-serine dehydratase YP_007904928.1 3999349 D 1171376 CDS YP_007904929.1 482906369 complement(4000753..4001283) 1 NC_021151.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); hypothetical protein 4001283 1171376003887 STU288_19220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904929.1 4000753 R 1171376 CDS YP_007904930.1 482906370 complement(4001280..4001642) 1 NC_021151.1 Inner membrane protein yidG 4001642 1171376003888 STU288_19225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein yidG YP_007904930.1 4001280 R 1171376 CDS YP_007904931.1 482906371 complement(4001632..4001979) 1 NC_021151.1 COG2149 Predicted membrane protein; inner membrane protein 4001979 1171376003889 STU288_19230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007904931.1 4001632 R 1171376 CDS YP_007904932.1 482906372 4002115..4002261 1 NC_021151.1 hypothetical protein 4002261 1171376003890 STU288_19235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904932.1 4002115 D 1171376 CDS YP_007904933.1 482906373 4002280..4002426 1 NC_021151.1 hypothetical protein 4002426 1171376003891 STU288_19240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904933.1 4002280 D 1171376 CDS YP_007904934.1 482906374 complement(4002423..4004084) 1 NC_021151.1 COG2985 Predicted permease; transporter 4004084 1171376003892 STU288_19245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007904934.1 4002423 R 1171376 CDS YP_007904935.1 482906375 complement(4004274..4004702) 1 NC_021151.1 COG0071 Molecular chaperone (small heat shock protein); heat shock chaperone IbpB 4004702 1171376003893 STU288_19250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock chaperone IbpB YP_007904935.1 4004274 R 1171376 CDS YP_007904936.1 482906376 complement(4004812..4005225) 1 NC_021151.1 COG0071 Molecular chaperone (small heat shock protein); heat shock protein IbpA 4005225 1171376003894 STU288_19255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heat shock protein IbpA YP_007904936.1 4004812 R 1171376 CDS YP_007904937.1 482906377 4005535..4005867 1 NC_021151.1 COG5645 Predicted periplasmic lipoprotein; hypothetical protein 4005867 1171376003895 STU288_19260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904937.1 4005535 D 1171376 CDS YP_007904938.1 482906378 complement(4005869..4007095) 1 NC_021151.1 COG2319 FOG: WD40 repeat; ATP/GTP-binding protein 4007095 1171376003896 STU288_19265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP/GTP-binding protein YP_007904938.1 4005869 R 1171376 CDS YP_007904939.1 482906379 complement(4007217..4008260) 1 NC_021151.1 COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH 4008260 1171376003897 STU288_19270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme lyase subunit CcmH YP_007904939.1 4007217 R 1171376 CDS YP_007904940.1 482906380 complement(4008257..4008814) 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE 4008814 1171376003898 STU288_19275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiol:disulfide interchange protein DsbE YP_007904940.1 4008257 R 1171376 CDS YP_007904941.1 482906381 complement(4008811..4010742) 1 NC_021151.1 COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF 4010742 1171376003899 STU288_19280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme lyase subunit CcmF YP_007904941.1 4008811 R 1171376 CDS YP_007904942.1 482906382 complement(4010739..4011218) 1 NC_021151.1 COG2332 Cytochrome c-type biogenesis protein CcmE; Cytochrome c-type biogenesis protein CcmE, heme chaperone 4011218 1171376003900 STU288_19285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Cytochrome c-type biogenesis protein CcmE, heme chaperone YP_007904942.1 4010739 R 1171376 CDS YP_007904943.1 482906383 complement(4011215..4011427) 1 NC_021151.1 COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD 4011427 1171376003901 STU288_19290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c biogenesis protein CcmD YP_007904943.1 4011215 R 1171376 CDS YP_007904944.1 482906384 complement(4011424..4012161) 1 NC_021151.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmC 4012161 1171376003902 STU288_19295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme ABC transporter membrane protein CcmC YP_007904944.1 4011424 R 1171376 CDS YP_007904945.1 482906385 complement(4012213..4012872) 1 NC_021151.1 COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme ABC transporter membrane protein CcmB 4012872 1171376003903 STU288_19300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 heme ABC transporter membrane protein CcmB YP_007904945.1 4012213 R 1171376 CDS YP_007904946.1 482906386 complement(4012869..4013486) 1 NC_021151.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA 4013486 1171376003904 STU288_19305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c biogenesis protein CcmA YP_007904946.1 4012869 R 1171376 CDS YP_007904947.1 482906387 complement(4013492..4014892) 1 NC_021151.1 COG1858 Cytochrome c peroxidase; cytochrome C peroxidase 4014892 1171376003905 STU288_19310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome C peroxidase YP_007904947.1 4013492 R 1171376 CDS YP_007904948.1 482906388 complement(4015082..4015714) 1 NC_021151.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone protein TorD 4015714 torD 1171376003906 torD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperone protein TorD YP_007904948.1 4015082 R 1171376 CDS YP_007904949.1 482906389 complement(4015707..4018259) 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; trimethylamine N-oxide reductase I catalytic subunit 4018259 1171376003907 STU288_19320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trimethylamine N-oxide reductase I catalytic subunit YP_007904949.1 4015707 R 1171376 CDS YP_007904950.1 482906390 complement(4018249..4019433) 1 NC_021151.1 COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; trimethylamine N-oxide reductase cytochrome c-type subunit 4019433 1171376003908 STU288_19325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trimethylamine N-oxide reductase cytochrome c-type subunit YP_007904950.1 4018249 R 1171376 CDS YP_007904951.1 482906391 4019563..4020255 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator TorR 4020255 1171376003909 STU288_19330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator TorR YP_007904951.1 4019563 D 1171376 CDS YP_007904952.1 482906392 complement(4020228..4021268) 1 NC_021151.1 COG1879 ABC-type sugar transport system, periplasmic component; TMAO reductase system periplasmic protein TorT 4021268 1171376003910 STU288_19335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TMAO reductase system periplasmic protein TorT YP_007904952.1 4020228 R 1171376 CDS YP_007904953.1 482906393 4021348..4024083 1 NC_021151.1 COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase TorS 4024083 1171376003911 STU288_19340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hybrid sensory histidine kinase TorS YP_007904953.1 4021348 D 1171376 CDS YP_007904954.1 482906394 complement(4024109..4025401) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; D-galactonate transporter DgoT 4025401 1171376003912 STU288_19345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-galactonate transporter DgoT YP_007904954.1 4024109 R 1171376 CDS YP_007904955.1 482906395 complement(4025531..4026679) 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; galactonate dehydratase 4026679 1171376003913 STU288_19350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 galactonate dehydratase YP_007904955.1 4025531 R 1171376 CDS YP_007904956.1 482906396 complement(4026676..4027293) 1 NC_021151.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4027293 1171376003914 STU288_19355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_007904956.1 4026676 R 1171376 CDS YP_007904957.1 482906397 complement(4027277..4028155) 1 NC_021151.1 COG3734 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase 4028155 1171376003915 STU288_19360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-oxo-3-deoxygalactonate kinase YP_007904957.1 4027277 R 1171376 CDS YP_007904958.1 482906398 complement(4028152..4028841) 1 NC_021151.1 COG2186 Transcriptional regulators; Transcriptional regulator nanR 4028841 1171376003916 STU288_19365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transcriptional regulator nanR YP_007904958.1 4028152 R 1171376 CDS YP_007904959.1 482906399 complement(4029102..4029947) 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphate phosphatase 4029947 1171376003917 STU288_19370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar phosphate phosphatase YP_007904959.1 4029102 R 1171376 CDS YP_007904960.1 482906400 4030253..4031515 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative permease 4031515 1171376003918 STU288_19375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative permease YP_007904960.1 4030253 D 1171376 CDS YP_007904961.1 482906401 4031529..4032722 1 NC_021151.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; racemase 4032722 1171376003919 STU288_19380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 racemase YP_007904961.1 4031529 D 1171376 CDS YP_007904962.1 482906402 4032837..4033733 1 NC_021151.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 4033733 1171376003920 STU288_19385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LysR family transcriptional regulator YP_007904962.1 4032837 D 1171376 CDS YP_007904963.1 482906403 complement(4033752..4036166) 1 NC_021151.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 4036166 gyrB 1171376003921 gyrB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA gyrase subunit B YP_007904963.1 4033752 R 1171376 CDS YP_007904964.1 482906404 complement(4036195..4037268) 1 NC_021151.1 COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein F 4037268 recF 1171376003922 recF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 recombination protein F YP_007904964.1 4036195 R 1171376 CDS YP_007904965.1 482906405 complement(4037416..4038516) 1 NC_021151.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 4038516 1171376003923 STU288_19400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit beta YP_007904965.1 4037416 R 1171376 CDS YP_007904966.1 482906406 complement(4038521..4039921) 1 NC_021151.1 COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein 4039921 dnaA 1171376003924 dnaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chromosomal replication initiation protein YP_007904966.1 4038521 R 1171376 CDS YP_007904967.1 482906407 4040283..4040441 1 NC_021151.1 hypothetical protein 4040441 1171376003925 STU288_19410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904967.1 4040283 D 1171376 CDS YP_007904968.1 482906408 4040582..4040722 1 NC_021151.1 COG0230 Ribosomal protein L34; ribosomal protein L34 4040722 1171376003926 STU288_19415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal protein L34 YP_007904968.1 4040582 D 1171376 CDS YP_007904969.1 482906409 4040739..4041098 1 NC_021151.1 COG0594 RNase P protein component; ribonuclease P 4041098 rnpA 1171376003927 rnpA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease P YP_007904969.1 4040739 D 1171376 CDS YP_007904970.1 482906410 4041062..4041319 1 NC_021151.1 COG0759 Uncharacterized conserved protein; hypothetical protein 4041319 1171376003928 STU288_19425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904970.1 4041062 D 1171376 CDS YP_007904971.1 482906411 4041322..4042968 1 NC_021151.1 COG0706 Preprotein translocase subunit YidC; membrane protein insertase 4042968 1171376003929 STU288_19430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane protein insertase YP_007904971.1 4041322 D 1171376 CDS YP_007904972.1 482906412 4043110..4044474 1 NC_021151.1 COG0486 Predicted GTPase; tRNA modification GTPase TrmE 4044474 trmE 1171376003930 trmE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA modification GTPase TrmE YP_007904972.1 4043110 D 1171376 CDS YP_007904973.1 482906413 4044730..4045224 1 NC_021151.1 COG0582 Integrase; Integrase 4045224 1171376003931 STU288_19440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Integrase YP_007904973.1 4044730 D 1171376 CDS YP_007904974.1 482906414 4045240..4045950 1 NC_021151.1 COG0582 Integrase; putative recombinase 4045950 1171376003932 STU288_19445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative recombinase YP_007904974.1 4045240 D 1171376 CDS YP_007904975.1 482906415 complement(4045985..4046212) 1 NC_021151.1 hypothetical protein 4046212 1171376003933 STU288_19450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904975.1 4045985 R 1171376 CDS YP_007904976.1 482906416 4046275..4047237 1 NC_021151.1 hypothetical protein 4047237 1171376003934 STU288_19455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904976.1 4046275 D 1171376 CDS YP_007904977.1 482906417 4047237..4048172 1 NC_021151.1 COG3344 Retron-type reverse transcriptase; reverse transcriptase 4048172 1171376003935 STU288_19460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 reverse transcriptase YP_007904977.1 4047237 D 1171376 CDS YP_007904978.1 482906418 4048974..4050161 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtL 4050161 1171376003936 STU288_19465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein MdtL YP_007904978.1 4048974 D 1171376 CDS YP_007904979.1 482906419 4050130..4051089 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator YidZ 4051089 1171376003937 STU288_19470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator YidZ YP_007904979.1 4050130 D 1171376 CDS YP_007904980.1 482906420 4051247..4052002 1 NC_021151.1 COG2091 Phosphopantetheinyl transferase; hypothetical protein 4052002 1171376003938 STU288_19475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904980.1 4051247 D 1171376 CDS YP_007904981.1 482906421 4052020..4052586 1 NC_021151.1 COG0431 Predicted flavoprotein; hypothetical protein 4052586 1171376003939 STU288_19480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007904981.1 4052020 D 1171376 CDS YP_007904982.1 482906422 complement(4052631..4053968) 1 NC_021151.1 COG2252 Permeases; adenine permease PurP 4053968 1171376003940 STU288_19485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenine permease PurP YP_007904982.1 4052631 R 1171376 CDS YP_007904983.1 482906423 4054137..4054802 1 NC_021151.1 COG0637 Predicted phosphatase/phosphohexomutase; 6-phosphogluconate phosphatase 4054802 1171376003941 STU288_19490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phosphogluconate phosphatase YP_007904983.1 4054137 D 1171376 CDS YP_007904984.1 482906424 complement(4054897..4055622) 1 NC_021151.1 COG0704 Phosphate uptake regulator; transcriptional regulator PhoU 4055622 1171376003942 STU288_19495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator PhoU YP_007904984.1 4054897 R 1171376 CDS YP_007904985.1 482906425 complement(4055637..4056410) 1 NC_021151.1 COG1117 ABC-type phosphate transport system, ATPase component; phosphate transporter ATP-binding protein 4056410 pstB 1171376003943 pstB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate transporter ATP-binding protein YP_007904985.1 4055637 R 1171376 CDS YP_007904986.1 482906426 complement(4056497..4057387) 1 NC_021151.1 COG0581 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PtsA 4057387 pstA 1171376003944 pstA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate transporter permease subunit PtsA YP_007904986.1 4056497 R 1171376 CDS YP_007904987.1 482906427 complement(4057387..4058346) 1 NC_021151.1 COG0573 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PstC 4058346 pstC 1171376003945 pstC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate transporter permease subunit PstC YP_007904987.1 4057387 R 1171376 CDS YP_007904988.1 482906428 complement(4058482..4059522) 1 NC_021151.1 COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter periplasmic substrate-binding protein PstS 4059522 1171376003946 STU288_19515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate ABC transporter periplasmic substrate-binding protein PstS YP_007904988.1 4058482 R 1171376 CDS YP_007904989.1 482906429 complement(4059689..4061062) 1 NC_021151.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system, fructose-specific IIBC component 4061062 1171376003947 STU288_19520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system, fructose-specific IIBC component YP_007904989.1 4059689 R 1171376 CDS YP_007904990.1 482906430 complement(4061111..4061929) 1 NC_021151.1 COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 4061929 1171376003948 STU288_19525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 shikimate 5-dehydrogenase YP_007904990.1 4061111 R 1171376 CDS YP_007904991.1 482906431 4062024..4063781 1 NC_021151.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4063781 1171376003949 STU288_19530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_007904991.1 4062024 D 1171376 CDS YP_007904992.1 482906432 complement(4063932..4065761) 1 NC_021151.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 4065761 1171376003950 STU288_19535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucosamine--fructose-6-phosphate aminotransferase YP_007904992.1 4063932 R 1171376 CDS YP_007904993.1 482906433 complement(4065950..4067320) 1 NC_021151.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4067320 glmU 1171376003951 glmU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_007904993.1 4065950 R 1171376 CDS YP_007904994.1 482906434 complement(4067640..4068338) 1 NC_021151.1 COG0670 Integral membrane protein, interacts with FtsH; permease 4068338 1171376003952 STU288_19545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 permease YP_007904994.1 4067640 R 1171376 CDS YP_007904995.1 482906435 complement(4068568..4068987) 1 NC_021151.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon 4068987 atpC 1171376003953 atpC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit epsilon YP_007904995.1 4068568 R 1171376 CDS YP_007904996.1 482906436 complement(4069008..4070390) 1 NC_021151.1 COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta 4070390 1171376003954 STU288_19555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit beta YP_007904996.1 4069008 R 1171376 CDS YP_007904997.1 482906437 complement(4070417..4071280) 1 NC_021151.1 COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma 4071280 1171376003955 STU288_19560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit gamma YP_007904997.1 4070417 R 1171376 CDS YP_007904998.1 482906438 complement(4071331..4072872) 1 NC_021151.1 COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha 4072872 1171376003956 STU288_19565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit alpha YP_007904998.1 4071331 R 1171376 CDS YP_007904999.1 482906439 complement(4072885..4073418) 1 NC_021151.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta 4073418 1171376003957 STU288_19570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit delta YP_007904999.1 4072885 R 1171376 CDS YP_007905000.1 482906440 complement(4073433..4073903) 1 NC_021151.1 COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B 4073903 1171376003958 STU288_19575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit B YP_007905000.1 4073433 R 1171376 CDS YP_007905001.1 482906441 complement(4073963..4074202) 1 NC_021151.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; ATP synthase, F0 subunit c 4074202 1171376003959 STU288_19580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP synthase, F0 subunit c YP_007905001.1 4073963 R 1171376 CDS YP_007905002.1 482906442 complement(4074249..4075064) 1 NC_021151.1 COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A 4075064 1171376003960 STU288_19585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit A YP_007905002.1 4074249 R 1171376 CDS YP_007905003.1 482906443 complement(4075073..4075453) 1 NC_021151.1 COG3312 F0F1-type ATP synthase, subunit I; F0F1 ATP synthase subunit I 4075453 1171376003961 STU288_19590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 F0F1 ATP synthase subunit I YP_007905003.1 4075073 R 1171376 CDS YP_007905004.1 482906444 complement(4076069..4076692) 1 NC_021151.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB 4076692 gidB 1171376003962 gidB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S rRNA methyltransferase GidB YP_007905004.1 4076069 R 1171376 CDS YP_007905005.1 482906445 complement(4076795..4078684) 1 NC_021151.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4078684 1171376003963 STU288_19600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_007905005.1 4076795 R 1171376 CDS YP_007905006.1 482906446 complement(4079063..4079506) 1 NC_021151.1 COG0716 Flavodoxins; FMN-binding protein MioC 4079506 1171376003964 STU288_19605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FMN-binding protein MioC YP_007905006.1 4079063 R 1171376 CDS YP_007905007.1 482906447 complement(4079596..4080054) 1 NC_021151.1 COG1522 Transcriptional regulators; DNA-binding transcriptional regulator AsnC 4080054 1171376003965 STU288_19610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator AsnC YP_007905007.1 4079596 R 1171376 CDS YP_007905008.1 482906448 4080205..4081197 1 NC_021151.1 COG2502 Asparagine synthetase A; asparagine synthetase AsnA 4081197 1171376003966 STU288_19615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 asparagine synthetase AsnA YP_007905008.1 4080205 D 1171376 CDS YP_007905009.1 482906449 complement(4081202..4082653) 1 NC_021151.1 COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein 4082653 1171376003967 STU288_19620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905009.1 4081202 R 1171376 CDS YP_007905010.1 482906450 complement(4082647..4084143) 1 NC_021151.1 COG0714 MoxR-like ATPases; regulatory ATPase RavA 4084143 1171376003968 STU288_19625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 regulatory ATPase RavA YP_007905010.1 4082647 R 1171376 CDS YP_007905011.1 482906451 4084491..4086359 1 NC_021151.1 COG3158 K+ transporter; potassium transport protein Kup 4086359 trkD 1171376003969 trkD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium transport protein Kup YP_007905011.1 4084491 D 1171376 CDS YP_007905012.1 482906452 4086556..4086975 1 NC_021151.1 COG1869 ABC-type ribose transport system, auxiliary component; D-ribose pyranase 4086975 1171376003970 STU288_19635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-ribose pyranase YP_007905012.1 4086556 D 1171376 CDS YP_007905013.1 482906453 4086983..4088488 1 NC_021151.1 COG1129 ABC-type sugar transport system, ATPase component; D-ribose transporter ATP binding protein 4088488 1171376003971 STU288_19640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-ribose transporter ATP binding protein YP_007905013.1 4086983 D 1171376 CDS YP_007905014.1 482906454 4088494..4089459 1 NC_021151.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ribose ABC transporter permease protein 4089459 rbsC 1171376003972 rbsC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribose ABC transporter permease protein YP_007905014.1 4088494 D 1171376 CDS YP_007905015.1 482906455 4089484..4090374 1 NC_021151.1 COG1879 ABC-type sugar transport system, periplasmic component; D-ribose transporter subunit RbsB 4090374 1171376003973 STU288_19650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-ribose transporter subunit RbsB YP_007905015.1 4089484 D 1171376 CDS YP_007905016.1 482906456 4090508..4091437 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; ribokinase 4091437 1171376003974 STU288_19655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribokinase YP_007905016.1 4090508 D 1171376 CDS YP_007905017.1 482906457 4091441..4092439 1 NC_021151.1 COG1609 Transcriptional regulators; transcriptional repressor RbsR 4092439 1171376003975 STU288_19660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor RbsR YP_007905017.1 4091441 D 1171376 CDS YP_007905018.1 482906458 complement(4092405..4093832) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative multidrug resistance protein mdtD 4093832 1171376003976 STU288_19665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative multidrug resistance protein mdtD YP_007905018.1 4092405 R 1171376 CDS YP_007905019.1 482906459 complement(4093844..4094548) 1 NC_021151.1 COG2186 Transcriptional regulators; GntR family transcriptional regulator 4094548 1171376003977 STU288_19670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007905019.1 4093844 R 1171376 CDS YP_007905020.1 482906460 complement(4100442..4101278) 1 NC_021151.1 COG0583 Transcriptional regulator; transcriptional regulator HdfR 4101278 1171376003984 STU288_19675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator HdfR YP_007905020.1 4100442 R 1171376 CDS YP_007905021.1 482906461 4101397..4101735 1 NC_021151.1 COG3085 Uncharacterized protein conserved in bacteria; hypothetical protein 4101735 1171376003985 STU288_19680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905021.1 4101397 D 1171376 CDS YP_007905022.1 482906462 complement(4101760..4103280) 1 NC_021151.1 COG0606 Predicted ATPase with chaperone activity; ATP-dependent protease 4103280 1171376003986 STU288_19685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent protease YP_007905022.1 4101760 R 1171376 CDS YP_007905023.1 482906463 4103445..4103552 1 NC_021151.1 hypothetical protein 4103552 1171376003987 STU288_19690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905023.1 4103445 D 1171376 CDS YP_007905024.1 482906464 4103870..4105516 1 NC_021151.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 2 catalytic subunit 4105516 1171376003988 STU288_19695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase 2 catalytic subunit YP_007905024.1 4103870 D 1171376 CDS YP_007905025.1 482906465 4105513..4105776 1 NC_021151.1 COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit; acetolactate synthase 2 regulatory subunit 4105776 ilvM 1171376003989 ilvM Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetolactate synthase 2 regulatory subunit YP_007905025.1 4105513 D 1171376 CDS YP_007905026.1 482906466 4105794..4106723 1 NC_021151.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 4106723 1171376003990 STU288_19705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 branched-chain amino acid aminotransferase YP_007905026.1 4105794 D 1171376 CDS YP_007905027.1 482906467 4106884..4108734 1 NC_021151.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxy-acid dehydratase 4108734 1171376003991 STU288_19710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroxy-acid dehydratase YP_007905027.1 4106884 D 1171376 CDS YP_007905028.1 482906468 4108737..4110281 1 NC_021151.1 COG1171 Threonine dehydratase; threonine dehydratase 4110281 1171376003992 STU288_19715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine dehydratase YP_007905028.1 4108737 D 1171376 CDS YP_007905029.1 482906469 4110565..4110882 1 NC_021151.1 COG4679 Phage-related protein; hypothetical protein 4110882 1171376003993 STU288_19720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905029.1 4110565 D 1171376 CDS YP_007905030.1 482906470 4110879..4111220 1 NC_021151.1 COG5606 Uncharacterized conserved small protein; XRE family transcriptional regulator 4111220 1171376003994 STU288_19725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 XRE family transcriptional regulator YP_007905030.1 4110879 D 1171376 CDS YP_007905031.1 482906471 complement(4111223..4112110) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator IlvY 4112110 1171376003995 STU288_19730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator IlvY YP_007905031.1 4111223 R 1171376 CDS YP_007905032.1 482906472 4112274..4113749 1 NC_021151.1 COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 4113749 1171376003996 STU288_19735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ketol-acid reductoisomerase YP_007905032.1 4112274 D 1171376 CDS YP_007905033.1 482906473 complement(4113841..4114122) 1 NC_021151.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase C 4114122 1171376003997 STU288_19740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-prolyl cis-trans isomerase C YP_007905033.1 4113841 R 1171376 CDS YP_007905034.1 482906474 4114450..4114560 1 NC_021151.1 putative inner membrane protein 4114560 1171376003998 STU288_19745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905034.1 4114450 D 1171376 CDS YP_007905035.1 482906475 4114660..4116684 1 NC_021151.1 COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase Rep 4116684 1171376003999 STU288_19750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent DNA helicase Rep YP_007905035.1 4114660 D 1171376 CDS YP_007905036.1 482906476 complement(4116724..4118205) 1 NC_021151.1 COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 4118205 1171376004000 STU288_19755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 guanosine pentaphosphate phosphohydrolase YP_007905036.1 4116724 R 1171376 CDS YP_007905037.1 482906477 complement(4118324..4119589) 1 NC_021151.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlB 4119589 1171376004001 STU288_19760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent RNA helicase RhlB YP_007905037.1 4118324 R 1171376 CDS YP_007905038.1 482906478 4119733..4120062 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 4120062 trxA 1171376004002 trxA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thioredoxin YP_007905038.1 4119733 D 1171376 CDS YP_007905039.1 482906479 4120481..4121740 1 NC_021151.1 COG1158 Transcription termination factor; transcription termination factor Rho 4121740 rho 1171376004003 rho Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription termination factor Rho YP_007905039.1 4120481 D 1171376 CDS YP_007905040.1 482906480 4121970..4123073 1 NC_021151.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4123073 1171376004004 STU288_19775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_007905040.1 4121970 D 1171376 CDS YP_007905041.1 482906481 4123085..4124131 1 NC_021151.1 COG3765 Chain length determinant protein; lipopolysaccharide biosynthesis protein WzzE 4124131 1171376004005 STU288_19780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide biosynthesis protein WzzE YP_007905041.1 4123085 D 1171376 CDS YP_007905042.1 482906482 4124187..4125317 1 NC_021151.1 COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl-D-glucosamine 2-epimerase 4125317 1171376004006 STU288_19785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetyl-D-glucosamine 2-epimerase YP_007905042.1 4124187 D 1171376 CDS YP_007905043.1 482906483 4125314..4126576 1 NC_021151.1 COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; UDP-N-acetyl-D-mannosamine dehydrogenase 4126576 wecC 1171376004007 wecC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetyl-D-mannosamine dehydrogenase YP_007905043.1 4125314 D 1171376 CDS YP_007905044.1 482906484 4126576..4127643 1 NC_021151.1 COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4127643 1171376004008 STU288_19795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dTDP-glucose 4,6-dehydratase YP_007905044.1 4126576 D 1171376 CDS YP_007905045.1 482906485 4127676..4127900 1 NC_021151.1 COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 4127900 1171376004009 STU288_19800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-1-phosphate thymidylyltransferase YP_007905045.1 4127676 D 1171376 CDS YP_007905046.1 482906486 4127878..4128555 1 NC_021151.1 TDP-fucosamine acetyltransferase 4128555 1171376004010 STU288_19805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TDP-fucosamine acetyltransferase YP_007905046.1 4127878 D 1171376 CDS YP_007905047.1 482906487 4128560..4129690 1 NC_021151.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4129690 1171376004011 STU288_19810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_007905047.1 4128560 D 1171376 CDS YP_007905048.1 482906488 4129692..4130942 1 NC_021151.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen translocase 4130942 1171376004012 STU288_19815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-antigen translocase YP_007905048.1 4129692 D 1171376 CDS YP_007905049.1 482906489 4130939..4132018 1 NC_021151.1 4-alpha-L-fucosyltransferase 4132018 1171376004013 STU288_19820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-alpha-L-fucosyltransferase YP_007905049.1 4130939 D 1171376 CDS YP_007905050.1 482906490 4132015..4133373 1 NC_021151.1 common antigen polymerase 4133373 1171376004014 STU288_19825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 common antigen polymerase YP_007905050.1 4132015 D 1171376 CDS YP_007905051.1 482906491 4133370..4134110 1 NC_021151.1 COG1922 Teichoic acid biosynthesis proteins; UDP-N-acetyl-D-mannosaminuronic acid transferase 4134110 1171376004015 STU288_19830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_007905051.1 4133370 D 1171376 CDS YP_007905052.1 482906492 4134317..4135702 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; transport protein YifK 4135702 1171376004016 STU288_19835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transport protein YifK YP_007905052.1 4134317 D 1171376 CDS YP_007905053.1 482906493 complement(4136819..4138018) 1 NC_021151.1 COG3071 Uncharacterized enzyme of heme biosynthesis; protoheme IX biogenesis protein 4138018 1171376004021 STU288_19840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protoheme IX biogenesis protein YP_007905053.1 4136819 R 1171376 CDS YP_007905054.1 482906494 complement(4138018..4139187) 1 NC_021151.1 COG2959 Uncharacterized enzyme of heme biosynthesis; uroporphyrinogen III C-methyltransferase 4139187 1171376004022 STU288_19845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uroporphyrinogen III C-methyltransferase YP_007905054.1 4138018 R 1171376 CDS YP_007905055.1 482906495 complement(4139209..4139949) 1 NC_021151.1 COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 4139949 hemD 1171376004023 hemD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uroporphyrinogen-III synthase YP_007905055.1 4139209 R 1171376 CDS YP_007905056.1 482906496 complement(4139946..4140887) 1 NC_021151.1 COG0181 Porphobilinogen deaminase; porphobilinogen deaminase 4140887 hemC 1171376004024 hemC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 porphobilinogen deaminase YP_007905056.1 4139946 R 1171376 CDS YP_007905057.1 482906497 4141264..4143810 1 NC_021151.1 COG3072 Adenylate cyclase; adenylate cyclase 4143810 cyaA 1171376004025 cyaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylate cyclase YP_007905057.1 4141264 D 1171376 CDS YP_007905058.1 482906498 4143918..4144271 1 NC_021151.1 putative inner membrane protein 4144271 1171376004026 STU288_19865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905058.1 4143918 D 1171376 CDS YP_007905059.1 482906499 4144457..4144999 1 NC_021151.1 putative inner membrane protein 4144999 1171376004027 STU288_19870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905059.1 4144457 D 1171376 CDS YP_007905060.1 482906500 complement(4145444..4145764) 1 NC_021151.1 COG1965 Protein implicated in iron transport, frataxin homolog; frataxin-like protein 4145764 cyaY 1171376004028 cyaY Salmonella enterica subsp. enterica serovar Typhimurium str. U288 frataxin-like protein YP_007905060.1 4145444 R 1171376 CDS YP_007905061.1 482906501 complement(4145834..4146223) 1 NC_021151.1 hypothetical protein 4146223 1171376004029 STU288_19880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905061.1 4145834 R 1171376 CDS YP_007905062.1 482906502 complement(4146351..4146443) 1 NC_021151.1 hypothetical protein 4146443 1171376004030 STU288_19885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905062.1 4146351 R 1171376 CDS YP_007905063.1 482906503 4146919..4147122 1 NC_021151.1 COG5567 Predicted small periplasmic lipoprotein; lipoprotein 4147122 1171376004031 STU288_19890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007905063.1 4146919 D 1171376 CDS YP_007905064.1 482906504 4147159..4147983 1 NC_021151.1 COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 4147983 dapF 1171376004032 dapF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diaminopimelate epimerase YP_007905064.1 4147159 D 1171376 CDS YP_007905065.1 482906505 4147980..4148687 1 NC_021151.1 COG3159 Uncharacterized protein conserved in bacteria; hypothetical protein 4148687 1171376004033 STU288_19900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905065.1 4147980 D 1171376 CDS YP_007905066.1 482906506 4148684..4149586 1 NC_021151.1 COG4973 Site-specific recombinase XerC; site-specific tyrosine recombinase XerC 4149586 xerC 1171376004034 xerC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 site-specific tyrosine recombinase XerC YP_007905066.1 4148684 D 1171376 CDS YP_007905067.1 482906507 4149586..4150302 1 NC_021151.1 COG1011 Predicted hydrolase (HAD superfamily); flavin mononucleotide phosphatase 4150302 1171376004035 STU288_19910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 flavin mononucleotide phosphatase YP_007905067.1 4149586 D 1171376 CDS YP_007905068.1 482906508 4150438..4152600 1 NC_021151.1 COG0210 Superfamily I DNA and RNA helicases; DNA-dependent helicase II 4152600 uvrD 1171376004036 uvrD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-dependent helicase II YP_007905068.1 4150438 D 1171376 CDS YP_007905069.1 482906509 4153072..4154022 1 NC_021151.1 COG0598 Mg2+ and Co2+ transporters; magnesium/nickel/cobalt transporter CorA 4154022 1171376004037 STU288_19920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 magnesium/nickel/cobalt transporter CorA YP_007905069.1 4153072 D 1171376 CDS YP_007905070.1 482906510 complement(4154071..4154451) 1 NC_021151.1 hypothetical protein 4154451 1171376004038 STU288_19925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905070.1 4154071 R 1171376 CDS YP_007905071.1 482906511 complement(4154467..4154925) 1 NC_021151.1 hypothetical protein 4154925 1171376004039 STU288_19930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905071.1 4154467 R 1171376 CDS YP_007905072.1 482906512 complement(4154960..4155844) 1 NC_021151.1 COG2962 Predicted permeases; chloramphenical resistance permease RarD 4155844 1171376004040 STU288_19935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chloramphenical resistance permease RarD YP_007905072.1 4154960 R 1171376 CDS YP_007905073.1 482906513 complement(4155888..4156355) 1 NC_021151.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 4156355 1171376004041 STU288_19940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905073.1 4155888 R 1171376 CDS YP_007905074.1 482906514 4156520..4157389 1 NC_021151.1 COG2829 Outer membrane phospholipase A; phospholipase A 4157389 1171376004042 STU288_19945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phospholipase A YP_007905074.1 4156520 D 1171376 CDS YP_007905075.1 482906515 4157473..4159302 1 NC_021151.1 COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ 4159302 1171376004043 STU288_19950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent DNA helicase RecQ YP_007905075.1 4157473 D 1171376 CDS YP_007905076.1 482906516 4159366..4159986 1 NC_021151.1 COG1280 Putative threonine efflux protein; threonine efflux system 4159986 1171376004044 STU288_19955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 threonine efflux system YP_007905076.1 4159366 D 1171376 CDS YP_007905077.1 482906517 complement(4160026..4160646) 1 NC_021151.1 COG1280 Putative threonine efflux protein; homoserine/homoserine lactone efflux protein 4160646 rhtB 1171376004045 rhtB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 homoserine/homoserine lactone efflux protein YP_007905077.1 4160026 R 1171376 CDS YP_007905078.1 482906518 4160757..4161773 1 NC_021151.1 COG2267 Lysophospholipase; lysophospholipase L2 4161773 1171376004046 STU288_19965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysophospholipase L2 YP_007905078.1 4160757 D 1171376 CDS YP_007905079.1 482906519 4161789..4162589 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; hydrolase 4162589 1171376004047 STU288_19970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hydrolase YP_007905079.1 4161789 D 1171376 CDS YP_007905080.1 482906520 4162670..4163569 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative membrane protein yigM 4163569 1171376004048 STU288_19975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative membrane protein yigM YP_007905080.1 4162670 D 1171376 CDS YP_007905081.1 482906521 complement(4163457..4164410) 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator MetR 4164410 1171376004049 STU288_19980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator MetR YP_007905081.1 4163457 R 1171376 CDS YP_007905082.1 482906522 4164659..4166923 1 NC_021151.1 COG0620 Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4166923 1171376004050 STU288_19985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_007905082.1 4164659 D 1171376 CDS YP_007905083.1 482906523 complement(4167076..4167210) 1 NC_021151.1 hypothetical protein 4167210 1171376004051 STU288_19990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905083.1 4167076 R 1171376 CDS YP_007905084.1 482906524 4167267..4168610 1 NC_021151.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative arylsulfatase regulator 4168610 1171376004052 STU288_19995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative arylsulfatase regulator YP_007905084.1 4167267 D 1171376 CDS YP_007905085.1 482906525 complement(4168690..4169502) 1 NC_021151.1 COG0412 Dienelactone hydrolase and related enzymes; dienelactone hydrolase 4169502 1171376004053 STU288_20000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dienelactone hydrolase YP_007905085.1 4168690 R 1171376 CDS YP_007905086.1 482906526 4169761..4170522 1 NC_021151.1 COG2820 Uridine phosphorylase; uridine phosphorylase 4170522 1171376004054 STU288_20005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uridine phosphorylase YP_007905086.1 4169761 D 1171376 CDS YP_007905087.1 482906527 4170662..4172092 1 NC_021151.1 COG1322 Uncharacterized protein conserved in bacteria; DNA recombination protein RmuC 4172092 1171376004055 STU288_20010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA recombination protein RmuC YP_007905087.1 4170662 D 1171376 CDS YP_007905088.1 482906528 4172188..4172943 1 NC_021151.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 4172943 ubiE 1171376004056 ubiE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ubiquinone/menaquinone biosynthesis methyltransferase YP_007905088.1 4172188 D 1171376 CDS YP_007905089.1 482906529 4172953..4173558 1 NC_021151.1 COG3165 Uncharacterized protein conserved in bacteria; Protein YigP 4173558 1171376004057 STU288_20020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein YigP YP_007905089.1 4172953 D 1171376 CDS YP_007905090.1 482906530 4173555..4175195 1 NC_021151.1 COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein UbiB 4175195 ubiB 1171376004058 ubiB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ubiquinone biosynthesis protein UbiB YP_007905090.1 4173555 D 1171376 CDS YP_007905091.1 482906531 4175401..4175655 1 NC_021151.1 COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein A 4175655 tatA 1171376004059 tatA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 twin arginine translocase protein A YP_007905091.1 4175401 D 1171376 CDS YP_007905092.1 482906532 4175659..4176207 1 NC_021151.1 COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 4176207 1171376004060 STU288_20035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sec-independent translocase YP_007905092.1 4175659 D 1171376 CDS YP_007905093.1 482906533 4176210..4176989 1 NC_021151.1 COG0805 Sec-independent protein secretion pathway component TatC; twin-arginine protein translocation system subunit TatC 4176989 1171376004061 STU288_20040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 twin-arginine protein translocation system subunit TatC YP_007905093.1 4176210 D 1171376 CDS YP_007905094.1 482906534 4177031..4177813 1 NC_021151.1 COG0084 Mg-dependent DNase; DNase TatD 4177813 1171376004062 STU288_20045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNase TatD YP_007905094.1 4177031 D 1171376 CDS YP_007905095.1 482906535 complement(4177821..4178309) 1 NC_021151.1 COG0250 Transcription antiterminator; transcriptional activator RfaH 4178309 rfaH 1171376004063 rfaH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator RfaH YP_007905095.1 4177821 R 1171376 CDS YP_007905096.1 482906536 4178504..4179973 1 NC_021151.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4179973 1171376004064 STU288_20055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-octaprenyl-4-hydroxybenzoate decarboxylase YP_007905096.1 4178504 D 1171376 CDS YP_007905097.1 482906537 4180059..4180760 1 NC_021151.1 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; FMN reductase 4180760 fre 1171376004065 fre Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FMN reductase YP_007905097.1 4180059 D 1171376 CDS YP_007905098.1 482906538 complement(4183034..4184197) 1 NC_021151.1 COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase 4184197 fadA 1171376004066 fadA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-ketoacyl-CoA thiolase YP_007905098.1 4183034 R 1171376 CDS YP_007905099.1 482906539 complement(4184207..4186396) 1 NC_021151.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha 4186396 fadB 1171376004067 fadB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multifunctional fatty acid oxidation complex subunit alpha YP_007905099.1 4184207 R 1171376 CDS YP_007905100.1 482906540 4186586..4187917 1 NC_021151.1 COG0006 Xaa-Pro aminopeptidase; proline dipeptidase 4187917 1171376004068 STU288_20085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 proline dipeptidase YP_007905100.1 4186586 D 1171376 CDS YP_007905101.1 482906541 4187917..4188531 1 NC_021151.1 COG1739 Uncharacterized conserved protein; hypothetical protein 4188531 1171376004069 STU288_20090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905101.1 4187917 D 1171376 CDS YP_007905102.1 482906542 4188570..4190021 1 NC_021151.1 COG0168 Trk-type K+ transport systems, membrane components; potassium transporter 4190021 1171376004070 STU288_20095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 potassium transporter YP_007905102.1 4188570 D 1171376 CDS YP_007905103.1 482906543 4190033..4190578 1 NC_021151.1 COG4635 Flavodoxin; protoporphyrinogen oxidase 4190578 hemG 1171376004071 hemG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protoporphyrinogen oxidase YP_007905103.1 4190033 D 1171376 CDS YP_007905104.1 482906544 complement(4196582..4197112) 1 NC_021151.1 COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein B 4197112 1171376004077 STU288_20105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin-guanine dinucleotide biosynthesis protein B YP_007905104.1 4196582 R 1171376 CDS YP_007905105.1 482906545 complement(4197094..4197678) 1 NC_021151.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4197678 mobA 1171376004078 mobA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_007905105.1 4197094 R 1171376 CDS YP_007905106.1 482906546 4197748..4198017 1 NC_021151.1 COG3084 Uncharacterized protein conserved in bacteria; Protein yihD 4198017 1171376004079 STU288_20115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein yihD YP_007905106.1 4197748 D 1171376 CDS YP_007905107.1 482906547 4198094..4199080 1 NC_021151.1 COG2334 Putative homoserine kinase type II (protein kinase fold); serine/threonine protein kinase 4199080 1171376004080 STU288_20120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 serine/threonine protein kinase YP_007905107.1 4198094 D 1171376 CDS YP_007905108.1 482906548 4199097..4199720 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; periplasmic protein disulfide isomerase I 4199720 1171376004081 STU288_20125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic protein disulfide isomerase I YP_007905108.1 4199097 D 1171376 CDS YP_007905109.1 482906549 complement(4199733..4200641) 1 NC_021151.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; acyltransferase 4200641 1171376004082 STU288_20130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acyltransferase YP_007905109.1 4199733 R 1171376 CDS YP_007905110.1 482906550 4201029..4203815 1 NC_021151.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 4203815 1171376004083 STU288_20135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase I YP_007905110.1 4201029 D 1171376 CDS YP_007905111.1 482906551 complement(4204150..4204782) 1 NC_021151.1 COG0218 Predicted GTPase; GTP-binding protein YsxC 4204782 engB 1171376004084 engB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein YsxC YP_007905111.1 4204150 R 1171376 CDS YP_007905112.1 482906552 4205022..4205246 1 NC_021151.1 putative cytoplasmic protein 4205246 1171376004085 STU288_20145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905112.1 4205022 D 1171376 CDS YP_007905113.1 482906553 4205365..4205880 1 NC_021151.1 COG3078 Uncharacterized protein conserved in bacteria; Der GTPase activator 4205880 1171376004086 STU288_20150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Der GTPase activator YP_007905113.1 4205365 D 1171376 CDS YP_007905114.1 482906554 4206069..4207442 1 NC_021151.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 4207442 1171376004087 STU288_20155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 coproporphyrinogen III oxidase YP_007905114.1 4206069 D 1171376 CDS YP_007905115.1 482906555 complement(4207755..4209164) 1 NC_021151.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen regulation protein NR(I) 4209164 glnG 1171376004088 glnG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrogen regulation protein NR(I) YP_007905115.1 4207755 R 1171376 CDS YP_007905116.1 482906556 complement(4209173..4210222) 1 NC_021151.1 COG3852 Signal transduction histidine kinase, nitrogen specific; nitrogen regulation protein NR(II) 4210222 glnL 1171376004089 glnL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nitrogen regulation protein NR(II) YP_007905116.1 4209173 R 1171376 CDS YP_007905117.1 482906557 complement(4210497..4211906) 1 NC_021151.1 COG0174 Glutamine synthetase; glutamine synthetase 4211906 glnA 1171376004090 glnA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamine synthetase YP_007905117.1 4210497 R 1171376 CDS YP_007905118.1 482906558 4212282..4214105 1 NC_021151.1 COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 4214105 1171376004091 STU288_20175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein YP_007905118.1 4212282 D 1171376 CDS YP_007905119.1 482906559 complement(4214160..4214894) 1 NC_021151.1 COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein 4214894 1171376004092 STU288_20180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905119.1 4214160 R 1171376 CDS YP_007905120.1 482906560 complement(4214879..4215757) 1 NC_021151.1 COG0535 Predicted Fe-S oxidoreductases; hypothetical protein 4215757 1171376004093 STU288_20185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905120.1 4214879 R 1171376 CDS YP_007905121.1 482906561 complement(4215754..4216995) 1 NC_021151.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 4216995 1171376004094 STU288_20190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 coproporphyrinogen III oxidase YP_007905121.1 4215754 R 1171376 CDS YP_007905122.1 482906562 complement(4216997..4217872) 1 NC_021151.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative membrane-associated metal-dependent hydrolase 4217872 1171376004095 STU288_20195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative membrane-associated metal-dependent hydrolase YP_007905122.1 4216997 R 1171376 CDS YP_007905123.1 482906563 complement(4217865..4218473) 1 NC_021151.1 hypothetical protein 4218473 1171376004096 STU288_20200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905123.1 4217865 R 1171376 CDS YP_007905124.1 482906564 complement(4218903..4219751) 1 NC_021151.1 putative cytoplasmic protein 4219751 1171376004097 STU288_20205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905124.1 4218903 R 1171376 CDS YP_007905125.1 482906565 complement(4219908..4220600) 1 NC_021151.1 outer membrane porin L 4220600 ompL 1171376004098 ompL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane porin L YP_007905125.1 4219908 R 1171376 CDS YP_007905126.1 482906566 complement(4220668..4222089) 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; Melibiose carrier protein Thiomethylgalactoside permease II 4222089 1171376004099 STU288_20215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Melibiose carrier protein Thiomethylgalactoside permease II YP_007905126.1 4220668 R 1171376 CDS YP_007905127.1 482906567 complement(4222135..4223517) 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; membrane permease 4223517 1171376004100 STU288_20220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane permease YP_007905127.1 4222135 R 1171376 CDS YP_007905128.1 482906568 complement(4223563..4225599) 1 NC_021151.1 COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase 4225599 1171376004101 STU288_20225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-glucosidase YP_007905128.1 4223563 R 1171376 CDS YP_007905129.1 482906569 complement(4225643..4226500) 1 NC_021151.1 COG2017 Galactose mutarotase and related enzymes; aldose-1-epimerase 4226500 1171376004102 STU288_20230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldose-1-epimerase YP_007905129.1 4225643 R 1171376 CDS YP_007905130.1 482906570 complement(4226504..4227745) 1 NC_021151.1 COG2942 N-acyl-D-glucosamine 2-epimerase; isomerase 4227745 1171376004103 STU288_20235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isomerase YP_007905130.1 4226504 R 1171376 CDS YP_007905131.1 482906571 complement(4227761..4228639) 1 NC_021151.1 COG3684 Tagatose-1,6-bisphosphate aldolase; aldolase 4228639 1171376004104 STU288_20240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldolase YP_007905131.1 4227761 R 1171376 CDS YP_007905132.1 482906572 complement(4228662..4229558) 1 NC_021151.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; NADH-dependent gamma-hydroxybutyrate dehydrogenase 4229558 1171376004105 STU288_20245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH-dependent gamma-hydroxybutyrate dehydrogenase YP_007905132.1 4228662 R 1171376 CDS YP_007905133.1 482906573 4229723..4230619 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; Bifunctional protein hldE 4230619 1171376004106 STU288_20250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Bifunctional protein hldE YP_007905133.1 4229723 D 1171376 CDS YP_007905134.1 482906574 4230653..4231456 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; putative HTH-type transcriptional regulator yihW 4231456 1171376004107 STU288_20255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator yihW YP_007905134.1 4230653 D 1171376 CDS YP_007905135.1 482906575 4231647..4232246 1 NC_021151.1 COG1011 Predicted hydrolase (HAD superfamily); alpha-D-glucose-1-phosphatase 4232246 1171376004108 STU288_20260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-D-glucose-1-phosphatase YP_007905135.1 4231647 D 1171376 CDS YP_007905136.1 482906576 4232240..4233112 1 NC_021151.1 COG1295 Predicted membrane protein; hypothetical protein 4233112 1171376004109 STU288_20265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905136.1 4232240 D 1171376 CDS YP_007905137.1 482906577 4233109..4233546 1 NC_021151.1 COG1490 D-Tyr-tRNAtyr deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4233546 1171376004110 STU288_20270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-tyrosyl-tRNA(Tyr) deacylase YP_007905137.1 4233109 D 1171376 CDS YP_007905138.1 482906578 4233543..4234532 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 4234532 1171376004111 STU288_20275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acetyltransferase YP_007905138.1 4233543 D 1171376 CDS YP_007905139.1 482906579 complement(4234547..4234975) 1 NC_021151.1 COG5499 Predicted transcription regulator containing HTH domain; hypothetical protein 4234975 1171376004112 STU288_20280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905139.1 4234547 R 1171376 CDS YP_007905140.1 482906580 complement(4234990..4235301) 1 NC_021151.1 COG4680 Uncharacterized protein conserved in bacteria; hypothetical protein 4235301 1171376004113 STU288_20285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905140.1 4234990 R 1171376 CDS YP_007905141.1 482906581 complement(4235387..4236316) 1 NC_021151.1 COG0657 Esterase/lipase; lipase 4236316 1171376004114 STU288_20290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipase YP_007905141.1 4235387 R 1171376 CDS YP_007905142.1 482906582 4236534..4236845 1 NC_021151.1 COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 4236845 1171376004115 STU288_20295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905142.1 4236534 D 1171376 CDS YP_007905143.1 482906583 4236846..4237136 1 NC_021151.1 COG2944 Predicted transcriptional regulator; XRE family transcriptional regulator 4237136 1171376004116 STU288_20300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 XRE family transcriptional regulator YP_007905143.1 4236846 D 1171376 CDS YP_007905144.1 482906584 complement(4237183..4238112) 1 NC_021151.1 COG3058 Uncharacterized protein involved in formate dehydrogenase formation; formate dehydrogenase accessory protein FdhE 4238112 1171376004117 STU288_20305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase accessory protein FdhE YP_007905144.1 4237183 R 1171376 CDS YP_007905145.1 482906585 complement(4238109..4238744) 1 NC_021151.1 COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-O subunit gamma 4238744 1171376004118 STU288_20310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase-O subunit gamma YP_007905145.1 4238109 R 1171376 CDS YP_007905146.1 482906586 complement(4238741..4239643) 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-O Fe-S subunit 4239643 1171376004119 STU288_20315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase-O Fe-S subunit YP_007905146.1 4238741 R 1171376 CDS YP_007905147.1 482906587 4242901..4243737 1 NC_021151.1 COG1526 Uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase accessory protein 4243737 1171376004120 STU288_20330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate dehydrogenase accessory protein YP_007905147.1 4242901 D 1171376 CDS YP_007905148.1 482906588 complement(4244005..4245036) 1 NC_021151.1 lipoprotein 4245036 1171376004121 STU288_20335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007905148.1 4244005 R 1171376 CDS YP_007905149.1 482906589 4245219..4246319 1 NC_021151.1 lipoprotein 4246319 1171376004122 STU288_20340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoprotein YP_007905149.1 4245219 D 1171376 CDS YP_007905150.1 482906590 complement(4246674..4246997) 1 NC_021151.1 AzlD Branched-chain amino acid transport 4246997 1171376004123 STU288_20345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AzlD Branched-chain amino acid transport YP_007905150.1 4246674 R 1171376 CDS YP_007905151.1 482906591 complement(4246997..4247656) 1 NC_021151.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); AzlC family protein 4247656 1171376004124 STU288_20350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AzlC family protein YP_007905151.1 4246997 R 1171376 CDS YP_007905152.1 482906592 4247757..4248305 1 NC_021151.1 COG1396 Predicted transcriptional regulators; putative HTH-type transcriptional regulator ydcN 4248305 1171376004125 STU288_20355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HTH-type transcriptional regulator ydcN YP_007905152.1 4247757 D 1171376 CDS YP_007905153.1 482906593 complement(4248394..4248708) 1 NC_021151.1 COG3254 Uncharacterized conserved protein; L-rhamnose 1-epimerase 4248708 1171376004126 STU288_20360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-rhamnose 1-epimerase YP_007905153.1 4248394 R 1171376 CDS YP_007905154.1 482906594 complement(4248705..4249853) 1 NC_021151.1 COG1454 Alcohol dehydrogenase, class IV; putative alcohol dehydrogenase 4249853 1171376004127 STU288_20365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative alcohol dehydrogenase YP_007905154.1 4248705 R 1171376 CDS YP_007905155.1 482906595 complement(4249980..4250807) 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase 4250807 1171376004128 STU288_20370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rhamnulose-1-phosphate aldolase YP_007905155.1 4249980 R 1171376 CDS YP_007905156.1 482906596 complement(4250950..4252209) 1 NC_021151.1 COG4806 L-rhamnose isomerase; L-rhamnose isomerase 4252209 1171376004129 STU288_20375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-rhamnose isomerase YP_007905156.1 4250950 R 1171376 CDS YP_007905157.1 482906597 complement(4252206..4253675) 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; rhamnulokinase 4253675 rhaB 1171376004130 rhaB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rhamnulokinase YP_007905157.1 4252206 R 1171376 CDS YP_007905158.1 482906598 4253963..4254799 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaS 4254799 1171376004131 STU288_20385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator RhaS YP_007905158.1 4253963 D 1171376 CDS YP_007905159.1 482906599 4254952..4255800 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaR 4255800 1171376004132 STU288_20390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional activator RhaR YP_007905159.1 4254952 D 1171376 CDS YP_007905160.1 482906600 complement(4255797..4256831) 1 NC_021151.1 rhamnose-proton symporter 4256831 1171376004133 STU288_20395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 rhamnose-proton symporter YP_007905160.1 4255797 R 1171376 CDS YP_007905161.1 482906601 4257300..4257425 1 NC_021151.1 hypothetical protein 4257425 1171376004134 STU288_20400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905161.1 4257300 D 1171376 CDS YP_007905162.1 482906602 4257462..4258133 1 NC_021151.1 hypothetical protein 4258133 1171376004135 STU288_20405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905162.1 4257462 D 1171376 CDS YP_007905163.1 482906603 complement(4258291..4259598) 1 NC_021151.1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; trap dicarboxylate transporter subunit DctM 4259598 1171376004136 STU288_20410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trap dicarboxylate transporter subunit DctM YP_007905163.1 4258291 R 1171376 CDS YP_007905164.1 482906604 complement(4259591..4260106) 1 NC_021151.1 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; putative TRAP transporter small permease protein 4260106 1171376004137 STU288_20415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative TRAP transporter small permease protein YP_007905164.1 4259591 R 1171376 CDS YP_007905165.1 482906605 complement(4260125..4261108) 1 NC_021151.1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; trap dicarboxylate transporter subunit DctP 4261108 1171376004138 STU288_20420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trap dicarboxylate transporter subunit DctP YP_007905165.1 4260125 R 1171376 CDS YP_007905166.1 482906606 4261437..4262057 1 NC_021151.1 COG0605 Superoxide dismutase; superoxide dismutase 4262057 1171376004139 STU288_20425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 superoxide dismutase YP_007905166.1 4261437 D 1171376 CDS YP_007905167.1 482906607 4262127..4262816 1 NC_021151.1 COG2258 Uncharacterized protein conserved in bacteria; 6-N-hydroxylaminopurine resistance protein 4262816 1171376004140 STU288_20430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-N-hydroxylaminopurine resistance protein YP_007905167.1 4262127 D 1171376 CDS YP_007905168.1 482906608 4262828..4263223 1 NC_021151.1 hypothetical protein 4263223 1171376004141 STU288_20435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905168.1 4262828 D 1171376 CDS YP_007905169.1 482906609 complement(4263274..4264647) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; two-component sensor protein 4264647 cpxA 1171376004142 cpxA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two-component sensor protein YP_007905169.1 4263274 R 1171376 CDS YP_007905170.1 482906610 complement(4264644..4265342) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator CpxR 4265342 1171376004143 STU288_20445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator CpxR YP_007905170.1 4264644 R 1171376 CDS YP_007905171.1 482906611 4265493..4265993 1 NC_021151.1 COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic repressor CpxP 4265993 cpxP 1171376004144 cpxP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic repressor CpxP YP_007905171.1 4265493 D 1171376 CDS YP_007905172.1 482906612 4266141..4267043 1 NC_021151.1 COG0053 Predicted Co/Zn/Cd cation transporters; ferrous iron efflux protein F 4267043 fieF 1171376004145 fieF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferrous iron efflux protein F YP_007905172.1 4266141 D 1171376 CDS YP_007905173.1 482906613 4267228..4268190 1 NC_021151.1 COG0205 6-phosphofructokinase; 6-phosphofructokinase 4268190 1171376004146 STU288_20460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 6-phosphofructokinase YP_007905173.1 4267228 D 1171376 CDS YP_007905174.1 482906614 4268394..4269383 1 NC_021151.1 COG1613 ABC-type sulfate transport system, periplasmic component; sulfate transporter subunit 4269383 1171376004147 STU288_20465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfate transporter subunit YP_007905174.1 4268394 D 1171376 CDS YP_007905175.1 482906615 4269484..4270239 1 NC_021151.1 COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 4270239 1171376004148 STU288_20470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 CDP-diacylglycerol pyrophosphatase YP_007905175.1 4269484 D 1171376 CDS YP_007905176.1 482906616 4270502..4271836 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; Na+/melibiose symporter 4271836 1171376004149 STU288_20475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Na+/melibiose symporter YP_007905176.1 4270502 D 1171376 CDS YP_007905177.1 482906617 4271847..4272806 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; aminoimidazole riboside kinase 4272806 1171376004150 STU288_20480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoimidazole riboside kinase YP_007905177.1 4271847 D 1171376 CDS YP_007905178.1 482906618 4272816..4273856 1 NC_021151.1 COG1397 ADP-ribosylglycohydrolase; hypothetical protein 4273856 1171376004151 STU288_20485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905178.1 4272816 D 1171376 CDS YP_007905179.1 482906619 4273919..4274641 1 NC_021151.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 4274641 1171376004152 STU288_20490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GntR family transcriptional regulator YP_007905179.1 4273919 D 1171376 CDS YP_007905180.1 482906620 4274739..4274903 1 NC_021151.1 hypothetical protein 4274903 1171376004153 STU288_20495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905180.1 4274739 D 1171376 CDS YP_007905181.1 482906621 4274919..4275050 1 NC_021151.1 hypothetical protein 4275050 1171376004154 STU288_20500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905181.1 4274919 D 1171376 CDS YP_007905182.1 482906622 complement(4275140..4275490) 1 NC_021151.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; polyketide synthase 4275490 1171376004155 STU288_20505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 polyketide synthase YP_007905182.1 4275140 R 1171376 CDS YP_007905183.1 482906623 complement(4275504..4277096) 1 NC_021151.1 COG1070 Sugar (pentulose and hexulose) kinases; autoinducer-2 (AI-2) kinase 4277096 1171376004156 STU288_20510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer-2 (AI-2) kinase YP_007905183.1 4275504 R 1171376 CDS YP_007905184.1 482906624 complement(4277184..4278143) 1 NC_021151.1 COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; transcriptional regulator LsrR 4278143 1171376004157 STU288_20515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator LsrR YP_007905184.1 4277184 R 1171376 CDS YP_007905185.1 482906625 4278399..4279934 1 NC_021151.1 COG1129 ABC-type sugar transport system, ATPase component; autoinducer 2 ABC transporter ATP-binding protein LsrA 4279934 1171376004158 STU288_20520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer 2 ABC transporter ATP-binding protein LsrA YP_007905185.1 4278399 D 1171376 CDS YP_007905186.1 482906626 4279928..4280971 1 NC_021151.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 ABC transporter permease LsrC 4280971 1171376004159 STU288_20525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer 2 ABC transporter permease LsrC YP_007905186.1 4279928 D 1171376 CDS YP_007905187.1 482906627 4280971..4281969 1 NC_021151.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 import system permease LsrD 4281969 1171376004160 STU288_20530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer 2 import system permease LsrD YP_007905187.1 4280971 D 1171376 CDS YP_007905188.1 482906628 4281998..4283020 1 NC_021151.1 COG1879 ABC-type sugar transport system, periplasmic component; autoinducer 2-binding protein lsrB 4283020 1171376004161 STU288_20535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer 2-binding protein lsrB YP_007905188.1 4281998 D 1171376 CDS YP_007905189.1 482906629 4283049..4283924 1 NC_021151.1 COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; autoinducer 2 aldolase 4283924 1171376004162 STU288_20540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer 2 aldolase YP_007905189.1 4283049 D 1171376 CDS YP_007905190.1 482906630 4284007..4284297 1 NC_021151.1 COG1359 Uncharacterized conserved protein; autoinducer-2 (AI-2) modifying protein LsrG 4284297 1171376004163 STU288_20545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 autoinducer-2 (AI-2) modifying protein LsrG YP_007905190.1 4284007 D 1171376 CDS YP_007905191.1 482906631 4284307..4285071 1 NC_021151.1 COG0036 Pentose-5-phosphate-3-epimerase; epimerase 4285071 1171376004164 STU288_20550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 epimerase YP_007905191.1 4284307 D 1171376 CDS YP_007905192.1 482906632 complement(4285163..4285930) 1 NC_021151.1 COG0149 Triosephosphate isomerase; triosephosphate isomerase 4285930 tpiA 1171376004165 tpiA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 triosephosphate isomerase YP_007905192.1 4285163 R 1171376 CDS YP_007905193.1 482906633 complement(4286043..4286639) 1 NC_021151.1 hypothetical protein 4286639 1171376004166 STU288_20560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905193.1 4286043 R 1171376 CDS YP_007905194.1 482906634 4286740..4287168 1 NC_021151.1 COG3152 Predicted membrane protein; hypothetical protein 4287168 1171376004167 STU288_20565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905194.1 4286740 D 1171376 CDS YP_007905195.1 482906635 complement(4287275..4288021) 1 NC_021151.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; ferredoxin-NADP reductase 4288021 1171376004168 STU288_20570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferredoxin-NADP reductase YP_007905195.1 4287275 R 1171376 CDS YP_007905196.1 482906636 complement(4288118..4289128) 1 NC_021151.1 COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose 1,6-bisphosphatase II 4289128 glpX 1171376004169 glpX Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose 1,6-bisphosphatase II YP_007905196.1 4288118 R 1171376 CDS YP_007905197.1 482906637 complement(4289240..4290748) 1 NC_021151.1 COG0554 Glycerol kinase; glycerol kinase 4290748 glpK 1171376004170 glpK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol kinase YP_007905197.1 4289240 R 1171376 CDS YP_007905198.1 482906638 complement(4290769..4291614) 1 NC_021151.1 COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator GlpF 4291614 1171376004171 STU288_20585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol uptake facilitator GlpF YP_007905198.1 4290769 R 1171376 CDS YP_007905199.1 482906639 4292013..4292252 1 NC_021151.1 COG3074 Uncharacterized protein conserved in bacteria; septal ring assembly protein ZapB 4292252 1171376004172 STU288_20590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 septal ring assembly protein ZapB YP_007905199.1 4292013 D 1171376 CDS YP_007905200.1 482906640 complement(4292474..4292959) 1 NC_021151.1 COG0684 Demethylmenaquinone methyltransferase; ribonuclease activity regulator protein RraA 4292959 1171376004173 STU288_20595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribonuclease activity regulator protein RraA YP_007905200.1 4292474 R 1171376 CDS YP_007905201.1 482906641 complement(4293052..4293981) 1 NC_021151.1 COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4293981 1171376004174 STU288_20600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_007905201.1 4293052 R 1171376 CDS YP_007905202.1 482906642 complement(4294048..4295379) 1 NC_021151.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU 4295379 hslU 1171376004175 hslU Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent protease ATP-binding subunit HslU YP_007905202.1 4294048 R 1171376 CDS YP_007905203.1 482906643 complement(4295389..4295919) 1 NC_021151.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease subunit HslV 4295919 1171376004176 STU288_20610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent protease subunit HslV YP_007905203.1 4295389 R 1171376 CDS YP_007905204.1 482906644 complement(4296011..4296985) 1 NC_021151.1 COG3087 Cell division protein; essential cell division protein FtsN 4296985 1171376004177 STU288_20615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 essential cell division protein FtsN YP_007905204.1 4296011 R 1171376 CDS YP_007905205.1 482906645 complement(4297079..4298104) 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator CytR 4298104 1171376004178 STU288_20620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator CytR YP_007905205.1 4297079 R 1171376 CDS YP_007905206.1 482906646 complement(4298259..4300457) 1 NC_021151.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA 4300457 1171376004179 STU288_20625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 primosome assembly protein PriA YP_007905206.1 4298259 R 1171376 CDS YP_007905207.1 482906647 4300661..4300873 1 NC_021151.1 COG0254 Ribosomal protein L31; hypothetical protein 4300873 1171376004180 STU288_20630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905207.1 4300661 D 1171376 CDS YP_007905208.1 482906648 complement(4300919..4301581) 1 NC_021151.1 hypothetical protein 4301581 1171376004181 STU288_20635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905208.1 4300919 R 1171376 CDS YP_007905209.1 482906649 complement(4301782..4303572) 1 NC_021151.1 putative arylsulfate sulfotransferase 4303572 1171376004182 STU288_20640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative arylsulfate sulfotransferase YP_007905209.1 4301782 R 1171376 CDS YP_007905210.1 482906650 4303457..4303618 1 NC_021151.1 hypothetical protein 4303618 1171376004183 STU288_20645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905210.1 4303457 D 1171376 CDS YP_007905211.1 482906651 complement(4304029..4304346) 1 NC_021151.1 COG3060 Transcriptional regulator of met regulon; transcriptional repressor protein MetJ 4304346 1171376004184 STU288_20650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor protein MetJ YP_007905211.1 4304029 R 1171376 CDS YP_007905212.1 482906652 4304611..4305771 1 NC_021151.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 4305771 1171376004185 STU288_20655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cystathionine gamma-synthase YP_007905212.1 4304611 D 1171376 CDS YP_007905213.1 482906653 4305774..4308206 1 NC_021151.1 COG0527 Aspartokinases; bifunctional aspartate kinase II/homoserine dehydrogenase II 4308206 metL 1171376004186 metL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_007905213.1 4305774 D 1171376 CDS YP_007905214.1 482906654 complement(4308322..4309179) 1 NC_021151.1 COG0668 Small-conductance mechanosensitive channel; putative inner membrane protein 4309179 1171376004187 STU288_20665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905214.1 4308322 R 1171376 CDS YP_007905215.1 482906655 complement(4309182..4310180) 1 NC_021151.1 hypothetical protein 4310180 1171376004188 STU288_20670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905215.1 4309182 R 1171376 CDS YP_007905216.1 482906656 complement(4310415..4311539) 1 NC_021151.1 hypothetical protein 4311539 1171376004189 STU288_20675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905216.1 4310415 R 1171376 CDS YP_007905217.1 482906657 4311675..4313231 1 NC_021151.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; hypothetical protein 4313231 1171376004190 STU288_20680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905217.1 4311675 D 1171376 CDS YP_007905218.1 482906658 4313426..4314316 1 NC_021151.1 COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4314316 metF 1171376004191 metF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 5,10-methylenetetrahydrofolate reductase YP_007905218.1 4313426 D 1171376 CDS YP_007905219.1 482906659 4314481..4316661 1 NC_021151.1 COG0376 Catalase (peroxidase I); catalase/hydroperoxidase HPI(I) 4316661 1171376004192 STU288_20690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 catalase/hydroperoxidase HPI(I) YP_007905219.1 4314481 D 1171376 CDS YP_007905220.1 482906660 complement(4316719..4317342) 1 NC_021151.1 COG3738 Uncharacterized protein conserved in bacteria; NADH:ubiquinone oxidoreductase 4317342 1171376004193 STU288_20695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH:ubiquinone oxidoreductase YP_007905220.1 4316719 R 1171376 CDS YP_007905221.1 482906661 complement(4317601..4318704) 1 NC_021151.1 COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase 4318704 gldA 1171376004194 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol dehydrogenase YP_007905221.1 4317601 R 1171376 CDS YP_007905222.1 482906662 complement(4318716..4319378) 1 NC_021151.1 COG0176 Transaldolase; fructose-6-phosphate aldolase 4319378 1171376004195 STU288_20705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-6-phosphate aldolase YP_007905222.1 4318716 R 1171376 CDS YP_007905223.1 482906663 complement(4319389..4321890) 1 NC_021151.1 COG1925 Phosphotransferase system, HPr-related proteins; mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA 4321890 1171376004196 STU288_20710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA YP_007905223.1 4319389 R 1171376 CDS YP_007905224.1 482906664 4322199..4323278 1 NC_021151.1 COG1299 Phosphotransferase system, fructose-specific IIC component; PTS system fructose-like transporter subunit EIIC 4323278 1171376004197 STU288_20715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose-like transporter subunit EIIC YP_007905224.1 4322199 D 1171376 CDS YP_007905225.1 482906665 4323293..4323613 1 NC_021151.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 4323613 1171376004198 STU288_20720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose-like transporter subunit EIIB YP_007905225.1 4323293 D 1171376 CDS YP_007905226.1 482906666 4323712..4326009 1 NC_021151.1 COG1882 Pyruvate-formate lyase; formate acetyltransferase 2 4326009 pflD 1171376004199 pflD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate acetyltransferase 2 YP_007905226.1 4323712 D 1171376 CDS YP_007905227.1 482906667 4325975..4326853 1 NC_021151.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase II activase 4326853 1171376004200 STU288_20730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate formate lyase II activase YP_007905227.1 4325975 D 1171376 CDS YP_007905228.1 482906668 4326855..4327208 1 NC_021151.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 4327208 1171376004201 STU288_20735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system fructose-like transporter subunit EIIB YP_007905228.1 4326855 D 1171376 CDS YP_007905229.1 482906669 complement(4327195..4328046) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 4328046 1171376004202 STU288_20740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AraC family transcriptional regulator YP_007905229.1 4327195 R 1171376 CDS YP_007905230.1 482906670 complement(4328207..4329940) 1 NC_021151.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 4329940 1171376004203 STU288_20745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905230.1 4328207 R 1171376 CDS YP_007905231.1 482906671 complement(4330151..4332802) 1 NC_021151.1 COG2352 Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 4332802 1171376004204 STU288_20750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoenolpyruvate carboxylase YP_007905231.1 4330151 R 1171376 CDS YP_007905232.1 482906672 complement(4333171..4334322) 1 NC_021151.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; acetylornithine deacetylase 4334322 1171376004205 STU288_20755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetylornithine deacetylase YP_007905232.1 4333171 R 1171376 CDS YP_007905233.1 482906673 4334411..4335415 1 NC_021151.1 COG0002 Acetylglutamate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase 4335415 argC 1171376004206 argC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetyl-gamma-glutamyl-phosphate reductase YP_007905233.1 4334411 D 1171376 CDS YP_007905234.1 482906674 4335426..4336199 1 NC_021151.1 COG0548 Acetylglutamate kinase; acetylglutamate kinase 4336199 1171376004207 STU288_20765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetylglutamate kinase YP_007905234.1 4335426 D 1171376 CDS YP_007905235.1 482906675 4336317..4337693 1 NC_021151.1 COG0165 Argininosuccinate lyase; argininosuccinate lyase 4337693 1171376004208 STU288_20770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 argininosuccinate lyase YP_007905235.1 4336317 D 1171376 CDS YP_007905236.1 482906676 4337978..4338895 1 NC_021151.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator OxyR 4338895 1171376004209 STU288_20775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator OxyR YP_007905236.1 4337978 D 1171376 CDS YP_007905237.1 482906677 complement(4338878..4340278) 1 NC_021151.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; soluble pyridine nucleotide transhydrogenase 4340278 1171376004210 STU288_20780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 soluble pyridine nucleotide transhydrogenase YP_007905237.1 4338878 R 1171376 CDS YP_007905238.1 482906678 4340480..4341112 1 NC_021151.1 COG1309 Transcriptional regulator; DNA-binding transcriptional repressor FabR 4341112 1171376004211 STU288_20785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor FabR YP_007905238.1 4340480 D 1171376 CDS YP_007905239.1 482906679 4341128..4341487 1 NC_021151.1 COG1882 Pyruvate-formate lyase; hypothetical protein 4341487 1171376004212 STU288_20790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905239.1 4341128 D 1171376 CDS YP_007905240.1 482906680 complement(4341534..4342634) 1 NC_021151.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (uracil-5-)-methyltransferase 4342634 1171376004213 STU288_20795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA (uracil-5-)-methyltransferase YP_007905240.1 4341534 R 1171376 CDS YP_007905241.1 482906681 4343008..4344852 1 NC_021151.1 COG4206 Outer membrane cobalamin receptor protein; vitamin B12/cobalamin outer membrane transporter 4344852 btuB 1171376004214 btuB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 vitamin B12/cobalamin outer membrane transporter YP_007905241.1 4343008 D 1171376 CDS YP_007905242.1 482906682 4344797..4345648 1 NC_021151.1 COG0796 Glutamate racemase; glutamate racemase 4345648 1171376004215 STU288_20805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate racemase YP_007905242.1 4344797 D 1171376 CDS YP_007905243.1 482906683 4351549..4352577 1 NC_021151.1 COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 4352577 murB 1171376004221 murB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylenolpyruvoylglucosamine reductase YP_007905243.1 4351549 D 1171376 CDS YP_007905244.1 482906684 4352574..4353536 1 NC_021151.1 COG1654 Biotin operon repressor; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4353536 1171376004222 STU288_20815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_007905244.1 4352574 D 1171376 CDS YP_007905245.1 482906685 complement(4353571..4354521) 1 NC_021151.1 COG1072 Panthothenate kinase; pantothenate kinase 4354521 1171376004223 STU288_20820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pantothenate kinase YP_007905245.1 4353571 R 1171376 CDS YP_007905246.1 482906686 4355480..4356664 1 NC_021151.1 COG0050 GTPases - translation elongation factors; elongation factor Tu 4356664 1171376004228 STU288_20825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor Tu YP_007905246.1 4355480 D 1171376 CDS YP_007905247.1 482906687 4356894..4357277 1 NC_021151.1 COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 4357277 secE 1171376004229 secE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 preprotein translocase subunit SecE YP_007905247.1 4356894 D 1171376 CDS YP_007905248.1 482906688 4357279..4357824 1 NC_021151.1 COG0250 Transcription antiterminator; transcription antitermination protein NusG 4357824 nusG 1171376004230 nusG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcription antitermination protein NusG YP_007905248.1 4357279 D 1171376 CDS YP_007905249.1 482906689 4357982..4358410 1 NC_021151.1 COG0080 Ribosomal protein L11; 50S ribosomal protein L11 4358410 1171376004231 STU288_20840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L11 YP_007905249.1 4357982 D 1171376 CDS YP_007905250.1 482906690 4358414..4359118 1 NC_021151.1 COG0081 Ribosomal protein L1; 50S ribosomal protein L1 4359118 rplA 1171376004232 rplA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L1 YP_007905250.1 4358414 D 1171376 CDS YP_007905251.1 482906691 4359538..4360035 1 NC_021151.1 COG0244 Ribosomal protein L10; 50S ribosomal protein L10 4360035 rplJ 1171376004233 rplJ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L10 YP_007905251.1 4359538 D 1171376 CDS YP_007905252.1 482906692 4360102..4360467 1 NC_021151.1 COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 4360467 rplL 1171376004234 rplL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L7/L12 YP_007905252.1 4360102 D 1171376 CDS YP_007905253.1 482906693 4360785..4364813 1 NC_021151.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta 4364813 rpoB 1171376004235 rpoB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-directed RNA polymerase subunit beta YP_007905253.1 4360785 D 1171376 CDS YP_007905254.1 482906694 4364890..4369113 1 NC_021151.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-directed RNA polymerase subunit beta' 4369113 1171376004236 STU288_20865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-directed RNA polymerase subunit beta' YP_007905254.1 4364890 D 1171376 CDS YP_007905255.1 482906695 4369200..4369478 1 NC_021151.1 inner membrane protein 4369478 1171376004237 STU288_20870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905255.1 4369200 D 1171376 CDS YP_007905256.1 482906696 complement(4369484..4369837) 1 NC_021151.1 COG0526 Thiol-disulfide isomerase and thioredoxins; hypothetical protein 4369837 1171376004238 STU288_20875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905256.1 4369484 R 1171376 CDS YP_007905257.1 482906697 complement(4369782..4369919) 1 NC_021151.1 hypothetical protein 4369919 1171376004239 STU288_20880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905257.1 4369782 R 1171376 CDS YP_007905258.1 482906698 4370209..4371237 1 NC_021151.1 type III secretion system protein 4371237 1171376004240 STU288_20885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III secretion system protein YP_007905258.1 4370209 D 1171376 CDS YP_007905259.1 482906699 4371227..4371436 1 NC_021151.1 COG3104 Dipeptide/tripeptide permease; hypothetical protein 4371436 1171376004241 STU288_20890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905259.1 4371227 D 1171376 CDS YP_007905260.1 482906700 4371560..4371748 1 NC_021151.1 hypothetical protein 4371748 1171376004242 STU288_20895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905260.1 4371560 D 1171376 CDS YP_007905261.1 482906701 complement(4371899..4373032) 1 NC_021151.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; thiamine biosynthesis protein ThiH 4373032 thiH 1171376004243 thiH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine biosynthesis protein ThiH YP_007905261.1 4371899 R 1171376 CDS YP_007905262.1 482906702 complement(4373029..4373799) 1 NC_021151.1 COG2022 Uncharacterized enzyme of thiazole biosynthesis; thiazole synthase 4373799 thiG 1171376004244 thiG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiazole synthase YP_007905262.1 4373029 R 1171376 CDS YP_007905263.1 482906703 complement(4373801..4374001) 1 NC_021151.1 COG2104 Sulfur transfer protein involved in thiamine biosynthesis; sulfur carrier protein ThiS 4374001 1171376004245 STU288_20910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur carrier protein ThiS YP_007905263.1 4373801 R 1171376 CDS YP_007905264.1 482906704 complement(4373982..4374740) 1 NC_021151.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; sulfur carrier protein ThiS adenylyltransferase 4374740 1171376004246 STU288_20915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sulfur carrier protein ThiS adenylyltransferase YP_007905264.1 4373982 R 1171376 CDS YP_007905265.1 482906705 complement(4374733..4375368) 1 NC_021151.1 COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 4375368 1171376004247 STU288_20920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamine-phosphate pyrophosphorylase YP_007905265.1 4374733 R 1171376 CDS YP_007905266.1 482906706 complement(4375368..4377263) 1 NC_021151.1 COG0422 Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase ThiC 4377263 1171376004248 STU288_20925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphomethylpyrimidine synthase ThiC YP_007905266.1 4375368 R 1171376 CDS YP_007905267.1 482906707 complement(4377627..4378115) 1 NC_021151.1 COG3160 Regulator of sigma D; anti-RNA polymerase sigma 70 factor 4378115 1171376004249 STU288_20930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anti-RNA polymerase sigma 70 factor YP_007905267.1 4377627 R 1171376 CDS YP_007905268.1 482906708 4378208..4378981 1 NC_021151.1 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; NADH pyrophosphatase 4378981 nudC 1171376004250 nudC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 NADH pyrophosphatase YP_007905268.1 4378208 D 1171376 CDS YP_007905269.1 482906709 4379022..4380086 1 NC_021151.1 COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 4380086 hemE 1171376004251 hemE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 uroporphyrinogen decarboxylase YP_007905269.1 4379022 D 1171376 CDS YP_007905270.1 482906710 4380096..4380767 1 NC_021151.1 COG1515 Deoxyinosine 3'endonuclease (endonuclease V); endonuclease V 4380767 1171376004252 STU288_20945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease V YP_007905270.1 4380096 D 1171376 CDS YP_007905271.1 482906711 4380809..4381399 1 NC_021151.1 COG3068 Uncharacterized protein conserved in bacteria; hypothetical protein 4381399 1171376004253 STU288_20950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905271.1 4380809 D 1171376 CDS YP_007905272.1 482906712 4381586..4381858 1 NC_021151.1 COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit alpha 4381858 1171376004254 STU288_20955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator HU subunit alpha YP_007905272.1 4381586 D 1171376 CDS YP_007905273.1 482906713 4381870..4382562 1 NC_021151.1 hypothetical protein 4382562 1171376004255 STU288_20960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905273.1 4381870 D 1171376 CDS YP_007905274.1 482906714 complement(4382604..4383059) 1 NC_021151.1 zinc resistance protein 4383059 zraP 1171376004256 zraP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc resistance protein YP_007905274.1 4382604 R 1171376 CDS YP_007905275.1 482906715 4383313..4384710 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensor protein ZraS 4384710 1171376004257 STU288_20970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein ZraS YP_007905275.1 4383313 D 1171376 CDS YP_007905276.1 482906716 4384716..4386041 1 NC_021151.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional regulatory protein ZraR 4386041 1171376004258 STU288_20975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulatory protein ZraR YP_007905276.1 4384716 D 1171376 CDS YP_007905277.1 482906717 complement(4386038..4387327) 1 NC_021151.1 COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 4387327 1171376004259 STU288_20980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoribosylamine--glycine ligase YP_007905277.1 4386038 R 1171376 CDS YP_007905278.1 482906718 complement(4387339..4388928) 1 NC_021151.1 COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4388928 purH 1171376004260 purH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_007905278.1 4387339 R 1171376 CDS YP_007905279.1 482906719 complement(4395123..4395560) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4395560 1171376004265 STU288_20990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007905279.1 4395123 R 1171376 CDS YP_007905280.1 482906720 4395717..4396646 1 NC_021151.1 COG1897 Homoserine trans-succinylase; homoserine O-succinyltransferase 4396646 1171376004266 STU288_20995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 homoserine O-succinyltransferase YP_007905280.1 4395717 D 1171376 CDS YP_007905281.1 482906721 4396915..4398516 1 NC_021151.1 COG2225 Malate synthase; malate synthase 4398516 1171376004267 STU288_21000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 malate synthase YP_007905281.1 4396915 D 1171376 CDS YP_007905282.1 482906722 4398548..4399852 1 NC_021151.1 COG2224 Isocitrate lyase; isocitrate lyase 4399852 1171376004268 STU288_21005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isocitrate lyase YP_007905282.1 4398548 D 1171376 CDS YP_007905283.1 482906723 4399954..4401705 1 NC_021151.1 COG4579 Isocitrate dehydrogenase kinase/phosphatase; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4401705 aceK 1171376004269 aceK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_007905283.1 4399954 D 1171376 CDS YP_007905284.1 482906724 complement(4401669..4402103) 1 NC_021151.1 COG4405 Uncharacterized protein conserved in bacteria; hypothetical protein 4402103 1171376004270 STU288_21015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905284.1 4401669 R 1171376 CDS YP_007905285.1 482906725 complement(4402087..4402911) 1 NC_021151.1 COG1414 Transcriptional regulator; transcriptional repressor IclR 4402911 1171376004271 STU288_21020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor IclR YP_007905285.1 4402087 R 1171376 CDS YP_007905286.1 482906726 4403215..4406898 1 NC_021151.1 COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain; B12-dependent methionine synthase 4406898 metH 1171376004272 metH Salmonella enterica subsp. enterica serovar Typhimurium str. U288 B12-dependent methionine synthase YP_007905286.1 4403215 D 1171376 CDS YP_007905287.1 482906727 4407165..4408796 1 NC_021151.1 COG1283 Na+/phosphate symporter; hypothetical protein 4408796 1171376004273 STU288_21030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905287.1 4407165 D 1171376 CDS YP_007905288.1 482906728 complement(4408872..4409561) 1 NC_021151.1 COG3340 Peptidase E; (alpha)-aspartyl dipeptidase 4409561 1171376004274 STU288_21035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 (alpha)-aspartyl dipeptidase YP_007905288.1 4408872 R 1171376 CDS YP_007905289.1 482906729 4409769..4410308 1 NC_021151.1 COG3122 Uncharacterized protein conserved in bacteria; nucleoprotein/polynucleotide-associated enzyme 4410308 1171376004275 STU288_21040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nucleoprotein/polynucleotide-associated enzyme YP_007905289.1 4409769 D 1171376 CDS YP_007905290.1 482906730 4410355..4411224 1 NC_021151.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase F 4411224 1171376004276 STU288_21045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA pseudouridine synthase F YP_007905290.1 4410355 D 1171376 CDS YP_007905291.1 482906731 complement(4411221..4411493) 1 NC_021151.1 hypothetical protein 4411493 1171376004277 STU288_21050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905291.1 4411221 R 1171376 CDS YP_007905292.1 482906732 complement(4411591..4412532) 1 NC_021151.1 COG0385 Predicted Na+-dependent transporter; hypothetical protein 4412532 1171376004278 STU288_21055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905292.1 4411591 R 1171376 CDS YP_007905293.1 482906733 complement(4412794..4413522) 1 NC_021151.1 hypothetical protein 4413522 1171376004279 STU288_21060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905293.1 4412794 R 1171376 CDS YP_007905294.1 482906734 complement(4413719..4413985) 1 NC_021151.1 putative inner membrane protein 4413985 1171376004280 STU288_21065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905294.1 4413719 R 1171376 CDS YP_007905295.1 482906735 complement(4414258..4414713) 1 NC_021151.1 hypothetical protein 4414713 1171376004281 STU288_21070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905295.1 4414258 R 1171376 CDS YP_007905296.1 482906736 complement(4414710..4415174) 1 NC_021151.1 putative cytoplasmic protein 4415174 1171376004282 STU288_21075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905296.1 4414710 R 1171376 CDS YP_007905297.1 482906737 complement(4415320..4417065) 1 NC_021151.1 COG5301 Phage-related tail fibre protein; bacteriophage protein 4417065 1171376004283 STU288_21080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007905297.1 4415320 R 1171376 CDS YP_007905298.1 482906738 complement(4417068..4417700) 1 NC_021151.1 COG4385 Bacteriophage P2-related tail formation protein; phage tail protein 4417700 1171376004284 STU288_21085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage tail protein YP_007905298.1 4417068 R 1171376 CDS YP_007905299.1 482906739 complement(4417693..4418808) 1 NC_021151.1 COG3948 Phage-related baseplate assembly protein; bacteriophage protein 4418808 1171376004285 STU288_21090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007905299.1 4417693 R 1171376 CDS YP_007905300.1 482906740 complement(4418799..4419158) 1 NC_021151.1 COG3628 Phage baseplate assembly protein W; baseplate 4419158 1171376004286 STU288_21095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 baseplate YP_007905300.1 4418799 R 1171376 CDS YP_007905301.1 482906741 4419219..4419341 1 NC_021151.1 hypothetical protein 4419341 1171376004287 STU288_21100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905301.1 4419219 D 1171376 CDS YP_007905302.1 482906742 complement(4419322..4420869) 1 NC_021151.1 putative inner membrane protein 4420869 1171376004288 STU288_21105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905302.1 4419322 R 1171376 CDS YP_007905303.1 482906743 complement(4420869..4421798) 1 NC_021151.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; phage glycosyl transferase 4421798 1171376004289 STU288_21110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage glycosyl transferase YP_007905303.1 4420869 R 1171376 CDS YP_007905304.1 482906744 complement(4421795..4422157) 1 NC_021151.1 putative phage glucose translocase 4422157 1171376004290 STU288_21115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage glucose translocase YP_007905304.1 4421795 R 1171376 CDS YP_007905305.1 482906745 complement(4422485..4423207) 1 NC_021151.1 COG4540 Phage P2 baseplate assembly protein gpV; Phage lower baseplate protein 4423207 1171376004291 STU288_21120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage lower baseplate protein YP_007905305.1 4422485 R 1171376 CDS YP_007905306.1 482906746 complement(4423217..4424260) 1 NC_021151.1 COG3500 Phage protein D; D protein 4424260 1171376004292 STU288_21125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D protein YP_007905306.1 4423217 R 1171376 CDS YP_007905307.1 482906747 complement(4424248..4424457) 1 NC_021151.1 phage Tail Protein X 4424457 1171376004293 STU288_21130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage Tail Protein X YP_007905307.1 4424248 R 1171376 CDS YP_007905308.1 482906748 complement(4424457..4425410) 1 NC_021151.1 bacteriophage protein 4425410 1171376004294 STU288_21135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage protein YP_007905308.1 4424457 R 1171376 CDS YP_007905309.1 482906749 complement(4425410..4427764) 1 NC_021151.1 COG5280 Phage-related minor tail protein; Tail protein 4427764 1171376004295 STU288_21140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Tail protein YP_007905309.1 4425410 R 1171376 CDS YP_007905310.1 482906750 complement(4427861..4427989) 1 NC_021151.1 phage GpE 4427989 1171376004296 STU288_21145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage GpE YP_007905310.1 4427861 R 1171376 CDS YP_007905311.1 482906751 complement(4427949..4428266) 1 NC_021151.1 prophage protein gp41 4428266 1171376004297 STU288_21150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 prophage protein gp41 YP_007905311.1 4427949 R 1171376 CDS YP_007905312.1 482906752 complement(4428318..4428842) 1 NC_021151.1 COG3498 Phage tail tube protein FII; bacteriophage tail protein 4428842 1171376004298 STU288_21155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bacteriophage tail protein YP_007905312.1 4428318 R 1171376 CDS YP_007905313.1 482906753 complement(4428842..4430269) 1 NC_021151.1 COG3497 Phage tail sheath protein FI; Phage tail sheath monomer 4430269 1171376004299 STU288_21160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Phage tail sheath monomer YP_007905313.1 4428842 R 1171376 CDS YP_007905314.1 482906754 complement(4430259..4430456) 1 NC_021151.1 gp12 4430456 1171376004300 STU288_21165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp12 YP_007905314.1 4430259 R 1171376 CDS YP_007905315.1 482906755 complement(4430453..4430908) 1 NC_021151.1 hypothetical protein 4430908 1171376004301 STU288_21170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905315.1 4430453 R 1171376 CDS YP_007905316.1 482906756 complement(4431068..4431382) 1 NC_021151.1 gp54 4431382 1171376004302 STU288_21175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp54 YP_007905316.1 4431068 R 1171376 CDS YP_007905317.1 482906757 complement(4431395..4432000) 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase 4432000 1171376004303 STU288_21180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative soluble lytic murein transglycosylase YP_007905317.1 4431395 R 1171376 CDS YP_007905318.1 482906758 complement(4432003..4432290) 1 NC_021151.1 gp51 4432290 1171376004304 STU288_21185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gp51 YP_007905318.1 4432003 R 1171376 CDS YP_007905319.1 482906759 4432866..4433213 1 NC_021151.1 COG5566 Uncharacterized conserved protein; DNA-binding protein RdgB 4433213 1171376004305 STU288_21190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding protein RdgB YP_007905319.1 4432866 D 1171376 CDS YP_007905320.1 482906760 complement(4433346..4434695) 1 NC_021151.1 COG0527 Aspartokinases; aspartate kinase III 4434695 1171376004306 STU288_21195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate kinase III YP_007905320.1 4433346 R 1171376 CDS YP_007905321.1 482906761 4435040..4436689 1 NC_021151.1 COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 4436689 pgi 1171376004307 pgi Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glucose-6-phosphate isomerase YP_007905321.1 4435040 D 1171376 CDS YP_007905322.1 482906762 4437130..4437375 1 NC_021151.1 hypothetical protein 4437375 1171376004308 STU288_21205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905322.1 4437130 D 1171376 CDS YP_007905323.1 482906763 4437439..4438077 1 NC_021151.1 putative lipoprotein yjbF Flags: Precursor 4438077 1171376004309 STU288_21210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative lipoprotein yjbF Flags: Precursor YP_007905323.1 4437439 D 1171376 CDS YP_007905324.1 482906764 4438074..4438811 1 NC_021151.1 Capsule biosynthesis 4438811 1171376004310 STU288_21215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Capsule biosynthesis YP_007905324.1 4438074 D 1171376 CDS YP_007905325.1 482906765 4438811..4440907 1 NC_021151.1 hypothetical protein 4440907 1171376004311 STU288_21220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905325.1 4438811 D 1171376 CDS YP_007905326.1 482906766 4441050..4441460 1 NC_021151.1 COG3223 Predicted membrane protein; phosphate-starvation-inducible protein PsiE 4441460 1171376004312 STU288_21225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphate-starvation-inducible protein PsiE YP_007905326.1 4441050 D 1171376 CDS YP_007905327.1 482906767 complement(4441626..4442516) 1 NC_021151.1 COG3833 ABC-type maltose transport systems, permease component; maltose transporter permease 4442516 malG 1171376004313 malG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose transporter permease YP_007905327.1 4441626 R 1171376 CDS YP_007905328.1 482906768 complement(4442531..4444075) 1 NC_021151.1 COG1175 ABC-type sugar transport systems, permease components; maltose transporter membrane protein 4444075 malF 1171376004314 malF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose transporter membrane protein YP_007905328.1 4442531 R 1171376 CDS YP_007905329.1 482906769 complement(4444207..4445397) 1 NC_021151.1 COG2182 Maltose-binding periplasmic proteins/domains; maltose ABC transporter periplasmic protein 4445397 malE 1171376004315 malE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose ABC transporter periplasmic protein YP_007905329.1 4444207 R 1171376 CDS YP_007905330.1 482906770 4445759..4446868 1 NC_021151.1 COG3839 ABC-type sugar transport systems, ATPase components; maltose/maltodextrin transporter ATP-binding protein 4446868 1171376004316 STU288_21245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose/maltodextrin transporter ATP-binding protein YP_007905330.1 4445759 D 1171376 CDS YP_007905331.1 482906771 4446957..4448315 1 NC_021151.1 COG4580 Maltoporin (phage lambda and maltose receptor); maltoporin 4448315 lamB 1171376004317 lamB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltoporin YP_007905331.1 4446957 D 1171376 CDS YP_007905332.1 482906772 4448479..4449396 1 NC_021151.1 maltose regulon periplasmic protein 4449396 1171376004318 STU288_21255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 maltose regulon periplasmic protein YP_007905332.1 4448479 D 1171376 CDS YP_007905333.1 482906773 4449577..4450074 1 NC_021151.1 COG3161 4-hydroxybenzoate synthetase (chorismate lyase); chorismate pyruvate lyase 4450074 ubiC 1171376004319 ubiC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chorismate pyruvate lyase YP_007905333.1 4449577 D 1171376 CDS YP_007905334.1 482906774 4450088..4450960 1 NC_021151.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; 4-hydroxybenzoate octaprenyltransferase 4450960 ubiA 1171376004320 ubiA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4-hydroxybenzoate octaprenyltransferase YP_007905334.1 4450088 D 1171376 CDS YP_007905335.1 482906775 complement(4451059..4453479) 1 NC_021151.1 COG2937 Glycerol-3-phosphate O-acyltransferase; glycerol-3-phosphate acyltransferase 4453479 1171376004321 STU288_21270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glycerol-3-phosphate acyltransferase YP_007905335.1 4451059 R 1171376 CDS YP_007905336.1 482906776 4453650..4454018 1 NC_021151.1 COG0818 Diacylglycerol kinase; diacylglycerol kinase 4454018 1171376004322 STU288_21275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diacylglycerol kinase YP_007905336.1 4453650 D 1171376 CDS YP_007905337.1 482906777 4454127..4454735 1 NC_021151.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 4454735 1171376004323 STU288_21280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 LexA repressor YP_007905337.1 4454127 D 1171376 CDS YP_007905338.1 482906778 4454914..4456239 1 NC_021151.1 COG0534 Na+-driven multidrug efflux pump; DNA-damage-inducible SOS response protein 4456239 1171376004324 STU288_21285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-damage-inducible SOS response protein YP_007905338.1 4454914 D 1171376 CDS YP_007905339.1 482906779 4456221..4456349 1 NC_021151.1 putative cytoplasmic protein 4456349 1171376004325 STU288_21290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905339.1 4456221 D 1171376 CDS YP_007905340.1 482906780 4456371..4456580 1 NC_021151.1 COG3237 Uncharacterized protein conserved in bacteria; hypothetical protein 4456580 1171376004326 STU288_21295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905340.1 4456371 D 1171376 CDS YP_007905341.1 482906781 complement(4456679..4457194) 1 NC_021151.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; zinc uptake transcriptional repressor 4457194 1171376004327 STU288_21300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 zinc uptake transcriptional repressor YP_007905341.1 4456679 R 1171376 CDS YP_007905342.1 482906782 4457441..4458751 1 NC_021151.1 hypothetical protein 4458751 1171376004328 STU288_21305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905342.1 4457441 D 1171376 CDS YP_007905343.1 482906783 4458839..4459837 1 NC_021151.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A 4459837 1171376004329 STU288_21310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA-dihydrouridine synthase A YP_007905343.1 4458839 D 1171376 CDS YP_007905344.1 482906784 4460005..4460247 1 NC_021151.1 phage shock protein G 4460247 pspG 1171376004330 pspG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage shock protein G YP_007905344.1 4460005 D 1171376 CDS YP_007905345.1 482906785 complement(4460422..4461405) 1 NC_021151.1 COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase, NADPH-dependent 4461405 1171376004331 STU288_21320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 quinone oxidoreductase, NADPH-dependent YP_007905345.1 4460422 R 1171376 CDS YP_007905346.1 482906786 4461470..4462885 1 NC_021151.1 COG0305 Replicative DNA helicase; replicative DNA helicase 4462885 1171376004332 STU288_21325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replicative DNA helicase YP_007905346.1 4461470 D 1171376 CDS YP_007905347.1 482906787 4462917..4463996 1 NC_021151.1 COG0787 Alanine racemase; alanine racemase 4463996 alr 1171376004333 alr Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alanine racemase YP_007905347.1 4462917 D 1171376 CDS YP_007905348.1 482906788 4464182..4465375 1 NC_021151.1 COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 4465375 1171376004334 STU288_21335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aromatic amino acid aminotransferase YP_007905348.1 4464182 D 1171376 CDS YP_007905349.1 482906789 4465562..4466275 1 NC_021151.1 COG3700 Acid phosphatase (class B); acid phosphatase/phosphotransferase 4466275 aphA 1171376004335 aphA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acid phosphatase/phosphotransferase YP_007905349.1 4465562 D 1171376 CDS YP_007905350.1 482906790 4466404..4466820 1 NC_021151.1 COG0432 Uncharacterized conserved protein; thiamin phosphate synthase 4466820 1171376004336 STU288_21345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiamin phosphate synthase YP_007905350.1 4466404 D 1171376 CDS YP_007905351.1 482906791 4466823..4467179 1 NC_021151.1 COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 4467179 1171376004337 STU288_21350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905351.1 4466823 D 1171376 CDS YP_007905352.1 482906792 complement(4467180..4467518) 1 NC_021151.1 hypothetical protein 4467518 1171376004338 STU288_21355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905352.1 4467180 R 1171376 CDS YP_007905353.1 482906793 complement(4468092..4470917) 1 NC_021151.1 COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A 4470917 uvrA 1171376004339 uvrA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 excinuclease ABC subunit A YP_007905353.1 4468092 R 1171376 CDS YP_007905354.1 482906794 4471165..4471695 1 NC_021151.1 COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 4471695 1171376004340 STU288_21365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 single-stranded DNA-binding protein YP_007905354.1 4471165 D 1171376 CDS YP_007905355.1 482906795 4472736..4473368 1 NC_021151.1 hypothetical protein 4473368 1171376004341 STU288_21370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905355.1 4472736 D 1171376 CDS YP_007905356.1 482906796 4473365..4474753 1 NC_021151.1 COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 4474753 1171376004342 STU288_21375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905356.1 4473365 D 1171376 CDS YP_007905357.1 482906797 4474743..4476062 1 NC_021151.1 COG1538 Outer membrane protein; putative ABC exporter outer membrane component 4476062 1171376004343 STU288_21380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ABC exporter outer membrane component YP_007905357.1 4474743 D 1171376 CDS YP_007905358.1 482906798 4476059..4477336 1 NC_021151.1 COG0845 Membrane-fusion protein; Leukotoxin secretion protein D 4477336 1171376004344 STU288_21385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Leukotoxin secretion protein D YP_007905358.1 4476059 D 1171376 CDS YP_007905359.1 482906799 4477353..4494032 1 NC_021151.1 COG1404 Subtilisin-like serine proteases; putative inner membrane protein 4494032 1171376004345 STU288_21390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905359.1 4477353 D 1171376 CDS YP_007905360.1 482906800 4494072..4496138 1 NC_021151.1 COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; ABC-type bacteriocin/lantibiotic exporter, containing an N- double-glycine peptidase domain 4496138 1171376004346 STU288_21395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC-type bacteriocin/lantibiotic exporter, containing an N- double-glycine peptidase domain YP_007905360.1 4494072 D 1171376 CDS YP_007905361.1 482906801 complement(4496416..4496697) 1 NC_021151.1 hypothetical protein 4496697 1171376004347 STU288_21400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905361.1 4496416 R 1171376 CDS YP_007905362.1 482906802 4497260..4498861 1 NC_021151.1 COG4943 Predicted signal transduction protein containing sensor and EAL domains; diguanylate cyclase 4498861 1171376004348 STU288_21405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 diguanylate cyclase YP_007905362.1 4497260 D 1171376 CDS YP_007905363.1 482906803 complement(4498849..4499172) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator SoxS 4499172 1171376004349 STU288_21410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator SoxS YP_007905363.1 4498849 R 1171376 CDS YP_007905364.1 482906804 4499259..4499717 1 NC_021151.1 COG0789 Predicted transcriptional regulators; redox-sensitivie transcriptional activator SoxR 4499717 1171376004350 STU288_21415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 redox-sensitivie transcriptional activator SoxR YP_007905364.1 4499259 D 1171376 CDS YP_007905365.1 482906805 4500010..4500678 1 NC_021151.1 COG0625 Glutathione S-transferase; glutathione S-transferase 4500678 1171376004351 STU288_21420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutathione S-transferase YP_007905365.1 4500010 D 1171376 CDS YP_007905366.1 482906806 4501025..4502374 1 NC_021151.1 COG2252 Permeases; inorganic anion transporter, sulfate permease (SulP) family protein 4502374 1171376004352 STU288_21425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inorganic anion transporter, sulfate permease (SulP) family protein YP_007905366.1 4501025 D 1171376 CDS YP_007905367.1 482906807 complement(4502367..4502552) 1 NC_021151.1 hypothetical protein 4502552 1171376004353 STU288_21430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905367.1 4502367 R 1171376 CDS YP_007905368.1 482906808 4502524..4504170 1 NC_021151.1 COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; Putative Na(+)/H(+) exchanger 4504170 1171376004354 STU288_21435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative Na(+)/H(+) exchanger YP_007905368.1 4502524 D 1171376 CDS YP_007905369.1 482906809 complement(4504265..4505152) 1 NC_021151.1 COG0583 Transcriptional regulator; lysR family regulatory protein 4505152 1171376004355 STU288_21440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lysR family regulatory protein YP_007905369.1 4504265 R 1171376 CDS YP_007905370.1 482906810 4505256..4505666 1 NC_021151.1 COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 4505666 1171376004356 STU288_21445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905370.1 4505256 D 1171376 CDS YP_007905371.1 482906811 4505659..4506348 1 NC_021151.1 COG1346 Putative effector of murein hydrolase; hypothetical protein 4506348 1171376004357 STU288_21450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905371.1 4505659 D 1171376 CDS YP_007905372.1 482906812 complement(4506387..4508036) 1 NC_021151.1 COG4147 Predicted symporter; acetate permease 4508036 actP 1171376004358 actP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetate permease YP_007905372.1 4506387 R 1171376 CDS YP_007905373.1 482906813 complement(4508033..4508347) 1 NC_021151.1 COG3162 Predicted membrane protein; putative inner membrane protein 4508347 1171376004359 STU288_21460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905373.1 4508033 R 1171376 CDS YP_007905374.1 482906814 complement(4508593..4510551) 1 NC_021151.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase 4510551 1171376004360 STU288_21465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyl-CoA synthetase YP_007905374.1 4508593 R 1171376 CDS YP_007905375.1 482906815 4510983..4512419 1 NC_021151.1 COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; cytochrome c nitrite reductase subunit c552 4512419 nrfA 1171376004361 nrfA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c nitrite reductase subunit c552 YP_007905375.1 4510983 D 1171376 CDS YP_007905376.1 482906816 4512531..4513097 1 NC_021151.1 cytochrome c nitrite reductase pentaheme subunit 4513097 1171376004362 STU288_21475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome c nitrite reductase pentaheme subunit YP_007905376.1 4512531 D 1171376 CDS YP_007905377.1 482906817 4513094..4513765 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate-dependent nitrite reductase subunit NrfC 4513765 1171376004363 STU288_21480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate-dependent nitrite reductase subunit NrfC YP_007905377.1 4513094 D 1171376 CDS YP_007905378.1 482906818 4513762..4514718 1 NC_021151.1 COG3301 Formate-dependent nitrite reductase, membrane component; formate-dependent nitrite reductase subunit NrfD 4514718 1171376004364 STU288_21485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate-dependent nitrite reductase subunit NrfD YP_007905378.1 4513762 D 1171376 CDS YP_007905379.1 482906819 4514711..4516933 1 NC_021151.1 COG1138 Cytochrome c biogenesis factor; formate-dependent nitrite reductase, assembly protein 4516933 1171376004365 STU288_21490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate-dependent nitrite reductase, assembly protein YP_007905379.1 4514711 D 1171376 CDS YP_007905380.1 482906820 4516930..4517550 1 NC_021151.1 COG4235 Cytochrome c biogenesis factor; formate-dependent nitrite reductase complex subunit NrfG 4517550 1171376004366 STU288_21495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 formate-dependent nitrite reductase complex subunit NrfG YP_007905380.1 4516930 D 1171376 CDS YP_007905381.1 482906821 4517895..4519205 1 NC_021151.1 COG1301 Na+/H+-dicarboxylate symporters; glutamate/aspartate:proton symporter 4519205 gltP 1171376004367 gltP Salmonella enterica subsp. enterica serovar Typhimurium str. U288 glutamate/aspartate:proton symporter YP_007905381.1 4517895 D 1171376 CDS YP_007905382.1 482906822 complement(4519363..4520052) 1 NC_021151.1 COG0790 FOG: TPR repeat, SEL1 subfamily; tetratricopeptide repeat exported protein 4520052 1171376004368 STU288_21505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetratricopeptide repeat exported protein YP_007905382.1 4519363 R 1171376 CDS YP_007905383.1 482906823 complement(4522731..4523639) 1 NC_021151.1 COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases; membrane-bound beta-hydroxylase 4523639 1171376004369 STU288_21520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 membrane-bound beta-hydroxylase YP_007905383.1 4522731 R 1171376 CDS YP_007905384.1 482906824 complement(4523897..4524331) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoalkylphosphonic acid N-acetyltransferase 4524331 1171376004370 STU288_21525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoalkylphosphonic acid N-acetyltransferase YP_007905384.1 4523897 R 1171376 CDS YP_007905385.1 482906825 complement(4524483..4524926) 1 NC_021151.1 COG2764 Uncharacterized protein conserved in bacteria; hypothetical protein 4524926 1171376004371 STU288_21530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905385.1 4524483 R 1171376 CDS YP_007905386.1 482906826 complement(4525046..4525381) 1 NC_021151.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; hypothetical protein 4525381 1171376004372 STU288_21535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905386.1 4525046 R 1171376 CDS YP_007905387.1 482906827 4525849..4527351 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; proline/glycine betaine transporter 4527351 1171376004373 STU288_21540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 proline/glycine betaine transporter YP_007905387.1 4525849 D 1171376 CDS YP_007905388.1 482906828 4527421..4527510 1 NC_021151.1 hypothetical protein 4527510 1171376004374 STU288_21545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905388.1 4527421 D 1171376 CDS YP_007905389.1 482906829 complement(4527518..4528597) 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensor protein BasS/PmrB 4528597 1171376004375 STU288_21550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensor protein BasS/PmrB YP_007905389.1 4527518 R 1171376 CDS YP_007905390.1 482906830 complement(4528598..4529266) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BasR 4529266 1171376004376 STU288_21555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator BasR YP_007905390.1 4528598 R 1171376 CDS YP_007905391.1 482906831 complement(4529263..4530906) 1 NC_021151.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; metal dependent hydrolase 4530906 1171376004377 STU288_21560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metal dependent hydrolase YP_007905391.1 4529263 R 1171376 CDS YP_007905392.1 482906832 complement(4531040..4532377) 1 NC_021151.1 COG0531 Amino acid transporters; arginine:agmatin antiporter 4532377 1171376004378 STU288_21565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine:agmatin antiporter YP_007905392.1 4531040 R 1171376 CDS YP_007905393.1 482906833 complement(4532517..4533278) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator AdiY 4533278 1171376004379 STU288_21570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator AdiY YP_007905393.1 4532517 R 1171376 CDS YP_007905394.1 482906834 complement(4533576..4535846) 1 NC_021151.1 COG1982 Arginine/lysine/ornithine decarboxylases; arginine decarboxylase 4535846 1171376004380 STU288_21575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine decarboxylase YP_007905394.1 4533576 R 1171376 CDS YP_007905395.1 482906835 complement(4536076..4537008) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator MelR 4537008 1171376004381 STU288_21580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator MelR YP_007905395.1 4536076 R 1171376 CDS YP_007905396.1 482906836 4537277..4538632 1 NC_021151.1 COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; alpha-galactosidase 4538632 1171376004382 STU288_21585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-galactosidase YP_007905396.1 4537277 D 1171376 CDS YP_007905397.1 482906837 4538716..4540146 1 NC_021151.1 COG2211 Na+/melibiose symporter and related transporters; melibiose:sodium symporter 4540146 1171376004383 STU288_21590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 melibiose:sodium symporter YP_007905397.1 4538716 D 1171376 CDS YP_007905398.1 482906838 complement(4540244..4541890) 1 NC_021151.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumB 4541890 1171376004384 STU288_21595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate hydratase FumB YP_007905398.1 4540244 R 1171376 CDS YP_007905399.1 482906839 complement(4541986..4543326) 1 NC_021151.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 4543326 1171376004385 STU288_21600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic C4-dicarboxylate transporter YP_007905399.1 4541986 R 1171376 CDS YP_007905400.1 482906840 complement(4544056..4544775) 1 NC_021151.1 COG4565 Response regulator of citrate/malate metabolism; DNA-binding transcriptional activator DcuR 4544775 1171376004386 STU288_21605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator DcuR YP_007905400.1 4544056 R 1171376 CDS YP_007905401.1 482906841 complement(4544772..4546403) 1 NC_021151.1 COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensory histidine kinase DcuS 4546403 1171376004387 STU288_21610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensory histidine kinase DcuS YP_007905401.1 4544772 R 1171376 CDS YP_007905402.1 482906842 4546759..4549188 1 NC_021151.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a 4549188 1171376004388 STU288_21615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic dimethyl sulfoxide reductase chain a YP_007905402.1 4546759 D 1171376 CDS YP_007905403.1 482906843 4549202..4549828 1 NC_021151.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase subunit B 4549828 1171376004389 STU288_21620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic dimethyl sulfoxide reductase subunit B YP_007905403.1 4549202 D 1171376 CDS YP_007905404.1 482906844 4549821..4550594 1 NC_021151.1 COG3302 DMSO reductase anchor subunit; putative dimethyl sulfoxide reductase subunit C 4550594 1171376004390 STU288_21625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative dimethyl sulfoxide reductase subunit C YP_007905404.1 4549821 D 1171376 CDS YP_007905405.1 482906845 4550670..4551263 1 NC_021151.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; putative anaerobic dehydrogenase component 4551263 1171376004391 STU288_21630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative anaerobic dehydrogenase component YP_007905405.1 4550670 D 1171376 CDS YP_007905406.1 482906846 complement(4551347..4552747) 1 NC_021151.1 COG5078 Ubiquitin-protein ligase; hypothetical protein 4552747 1171376004392 STU288_21635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905406.1 4551347 R 1171376 CDS YP_007905407.1 482906847 4553051..4553956 1 NC_021151.1 COG3204 Uncharacterized protein conserved in bacteria; hypothetical protein 4553956 1171376004393 STU288_21640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905407.1 4553051 D 1171376 CDS YP_007905408.1 482906848 4554294..4554752 1 NC_021151.1 COG1943 Transposase and inactivated derivatives; transposase for insertion sequence element IS200 4554752 1171376004394 STU288_21645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transposase for insertion sequence element IS200 YP_007905408.1 4554294 D 1171376 CDS YP_007905409.1 482906849 complement(4554961..4555149) 1 NC_021151.1 hypothetical protein 4555149 1171376004395 STU288_21650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905409.1 4554961 R 1171376 CDS YP_007905410.1 482906850 complement(4555238..4555399) 1 NC_021151.1 putative cytoplasmic protein 4555399 1171376004396 STU288_21655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905410.1 4555238 R 1171376 CDS YP_007905411.1 482906851 complement(4555476..4555748) 1 NC_021151.1 COG2771 DNA-binding HTH domain-containing proteins; Transcriptional regulatory protein fixJ 4555748 1171376004397 STU288_21660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transcriptional regulatory protein fixJ YP_007905411.1 4555476 R 1171376 CDS YP_007905412.1 482906852 complement(4556328..4556636) 1 NC_021151.1 AraC family transcriptional regulator 4556636 1171376004398 STU288_21665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 AraC family transcriptional regulator YP_007905412.1 4556328 R 1171376 CDS YP_007905413.1 482906853 4556774..4556899 1 NC_021151.1 hypothetical protein 4556899 1171376004399 STU288_21670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905413.1 4556774 D 1171376 CDS YP_007905414.1 482906854 4557439..4557732 1 NC_021151.1 COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein 4557732 1171376004400 STU288_21675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905414.1 4557439 D 1171376 CDS YP_007905415.1 482906855 4557729..4558220 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4558220 1171376004401 STU288_21680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007905415.1 4557729 D 1171376 CDS YP_007905416.1 482906856 complement(4558468..4559220) 1 NC_021151.1 COG0671 Membrane-associated phospholipid phosphatase; nonspecific acid phosphatase 4559220 1171376004402 STU288_21685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 nonspecific acid phosphatase YP_007905416.1 4558468 R 1171376 CDS YP_007905417.1 482906857 4559619..4559762 1 NC_021151.1 hypothetical protein 4559762 1171376004403 STU288_21690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905417.1 4559619 D 1171376 CDS YP_007905418.1 482906858 complement(4560429..4560806) 1 NC_021151.1 hypothetical protein 4560806 1171376004404 STU288_21695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905418.1 4560429 R 1171376 CDS YP_007905419.1 482906859 4560878..4561210 1 NC_021151.1 COG0789 Predicted transcriptional regulators; putative regulatory protein 4561210 1171376004405 STU288_21700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative regulatory protein YP_007905419.1 4560878 D 1171376 CDS YP_007905420.1 482906860 complement(4561649..4562224) 1 NC_021151.1 COG1309 Transcriptional regulator; transcriptional regulator 4562224 1171376004407 STU288_21705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007905420.1 4561649 R 1171376 CDS YP_007905421.1 482906861 complement(4562261..4563964) 1 NC_021151.1 COG4232 Thiol:disulfide interchange protein; thiol:disulfide interchange protein precursor 4563964 dipZ 1171376004408 dipZ Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thiol:disulfide interchange protein precursor YP_007905421.1 4562261 R 1171376 CDS YP_007905422.1 482906862 complement(4563940..4564287) 1 NC_021151.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent-cation tolerance protein CutA 4564287 1171376004409 STU288_21715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 divalent-cation tolerance protein CutA YP_007905422.1 4563940 R 1171376 CDS YP_007905423.1 482906863 complement(4564408..4565709) 1 NC_021151.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 4565709 1171376004410 STU288_21720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic C4-dicarboxylate transporter YP_007905423.1 4564408 R 1171376 CDS YP_007905424.1 482906864 complement(4565824..4567260) 1 NC_021151.1 COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 4567260 aspA 1171376004411 aspA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate ammonia-lyase YP_007905424.1 4565824 R 1171376 CDS YP_007905425.1 482906865 4567601..4568077 1 NC_021151.1 COG3030 Protein affecting phage T7 exclusion by the F plasmid; phage T7 F exclusion suppressor FxsA 4568077 fxsA 1171376004412 fxsA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phage T7 F exclusion suppressor FxsA YP_007905425.1 4567601 D 1171376 CDS YP_007905426.1 482906866 complement(4568136..4569377) 1 NC_021151.1 COG0531 Amino acid transporters; transporter 4569377 1171376004413 STU288_21735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transporter YP_007905426.1 4568136 R 1171376 CDS YP_007905427.1 482906867 4569653..4569946 1 NC_021151.1 COG0234 Co-chaperonin GroES (HSP10); 10 kDa chaperonin 4569946 1171376004414 STU288_21740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 10 kDa chaperonin YP_007905427.1 4569653 D 1171376 CDS YP_007905428.1 482906868 4569990..4571636 1 NC_021151.1 COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 4571636 groEL 1171376004415 groEL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chaperonin GroEL YP_007905428.1 4569990 D 1171376 CDS YP_007905429.1 482906869 4571880..4572233 1 NC_021151.1 hypothetical protein 4572233 1171376004416 STU288_21750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905429.1 4571880 D 1171376 CDS YP_007905430.1 482906870 complement(4572281..4573138) 1 NC_021151.1 hypothetical protein 4573138 1171376004417 STU288_21755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905430.1 4572281 R 1171376 CDS YP_007905431.1 482906871 complement(4573420..4574448) 1 NC_021151.1 COG1509 Lysine 2,3-aminomutase; KamA family protein 4574448 1171376004418 STU288_21760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 KamA family protein YP_007905431.1 4573420 R 1171376 CDS YP_007905432.1 482906872 4574489..4575055 1 NC_021151.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 4575055 1171376004419 STU288_21765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 elongation factor P YP_007905432.1 4574489 D 1171376 CDS YP_007905433.1 482906873 4575116..4575250 1 NC_021151.1 entericidin A precursor 4575250 1171376004420 STU288_21770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 entericidin A precursor YP_007905433.1 4575116 D 1171376 CDS YP_007905434.1 482906874 4575358..4575504 1 NC_021151.1 COG5510 Predicted small secreted protein; entericidin B membrane lipoprotein 4575504 1171376004421 STU288_21775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 entericidin B membrane lipoprotein YP_007905434.1 4575358 D 1171376 CDS YP_007905435.1 482906875 complement(4575535..4576122) 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator 4576122 1171376004422 STU288_21780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional regulator YP_007905435.1 4575535 R 1171376 CDS YP_007905436.1 482906876 4576379..4576696 1 NC_021151.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein 4576696 1171376004423 STU288_21785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein YP_007905436.1 4576379 D 1171376 CDS YP_007905437.1 482906877 complement(4576713..4577246) 1 NC_021151.1 COG3040 Bacterial lipocalin; outer membrane lipoprotein Blc 4577246 1171376004424 STU288_21790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane lipoprotein Blc YP_007905437.1 4576713 R 1171376 CDS YP_007905438.1 482906878 complement(4577358..4577717) 1 NC_021151.1 COG3080 Fumarate reductase subunit D; fumarate reductase subunit D 4577717 1171376004425 STU288_21795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate reductase subunit D YP_007905438.1 4577358 R 1171376 CDS YP_007905439.1 482906879 complement(4577728..4578123) 1 NC_021151.1 COG3029 Fumarate reductase subunit C; fumarate reductase subunit C 4578123 1171376004426 STU288_21800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate reductase subunit C YP_007905439.1 4577728 R 1171376 CDS YP_007905440.1 482906880 complement(4578134..4578868) 1 NC_021151.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit 4578868 1171376004427 STU288_21805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate reductase iron-sulfur subunit YP_007905440.1 4578134 R 1171376 CDS YP_007905441.1 482906881 complement(4578861..4580651) 1 NC_021151.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 4580651 1171376004428 STU288_21810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fumarate reductase flavoprotein subunit YP_007905441.1 4578861 R 1171376 CDS YP_007905442.1 482906882 4580974..4581951 1 NC_021151.1 COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II); poxB regulator PoxA 4581951 1171376004429 STU288_21815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 poxB regulator PoxA YP_007905442.1 4580974 D 1171376 CDS YP_007905443.1 482906883 4582177..4583679 1 NC_021151.1 COG0531 Amino acid transporters; inner membrane transporter YjeM 4583679 1171376004430 STU288_21820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane transporter YjeM YP_007905443.1 4582177 D 1171376 CDS YP_007905444.1 482906884 4583731..4584045 1 NC_021151.1 putative inner membrane protein 4584045 1171376004431 STU288_21825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905444.1 4583731 D 1171376 CDS YP_007905445.1 482906885 complement(4584112..4587438) 1 NC_021151.1 COG3264 Small-conductance mechanosensitive channel; mechanosensitive channel protein 4587438 1171376004432 STU288_21830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mechanosensitive channel protein YP_007905445.1 4584112 R 1171376 CDS YP_007905446.1 482906886 complement(4587457..4588425) 1 NC_021151.1 COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 4588425 psd 1171376004433 psd Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphatidylserine decarboxylase YP_007905446.1 4587457 R 1171376 CDS YP_007905447.1 482906887 complement(4588517..4589569) 1 NC_021151.1 COG1162 Predicted GTPases; GTPase RsgA 4589569 1171376004434 STU288_21840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTPase RsgA YP_007905447.1 4588517 R 1171376 CDS YP_007905448.1 482906888 4589676..4590221 1 NC_021151.1 COG1949 Oligoribonuclease (3'->5' exoribonuclease); oligoribonuclease 4590221 1171376004435 STU288_21845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 oligoribonuclease YP_007905448.1 4589676 D 1171376 CDS YP_007905449.1 482906889 complement(4590283..4591023) 1 NC_021151.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine-binding periplasmic protein 4591023 1171376004436 STU288_21850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine-binding periplasmic protein YP_007905449.1 4590283 R 1171376 CDS YP_007905450.1 482906890 complement(4592108..4593247) 1 NC_021151.1 COG1600 Uncharacterized Fe-S protein; 4Fe-4S binding protein 4593247 1171376004440 STU288_21855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4Fe-4S binding protein YP_007905450.1 4592108 R 1171376 CDS YP_007905451.1 482906891 4593246..4594793 1 NC_021151.1 COG0062 Uncharacterized conserved protein; carbohydrate kinase 4594793 1171376004441 STU288_21860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbohydrate kinase YP_007905451.1 4593246 D 1171376 CDS YP_007905452.1 482906892 4594765..4595226 1 NC_021151.1 COG0802 Predicted ATPase or kinase; ADP-binding protein 4595226 1171376004442 STU288_21865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ADP-binding protein YP_007905452.1 4594765 D 1171376 CDS YP_007905453.1 482906893 4595243..4596562 1 NC_021151.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase II 4596562 1171376004443 STU288_21870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 N-acetylmuramoyl-l-alanine amidase II YP_007905453.1 4595243 D 1171376 CDS YP_007905454.1 482906894 4596572..4598428 1 NC_021151.1 COG0323 DNA mismatch repair enzyme (predicted ATPase); DNA mismatch repair protein 4598428 mutL 1171376004444 mutL Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA mismatch repair protein YP_007905454.1 4596572 D 1171376 CDS YP_007905455.1 482906895 4598421..4599371 1 NC_021151.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4599371 miaA 1171376004445 miaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA delta(2)-isopentenylpyrophosphate transferase YP_007905455.1 4598421 D 1171376 CDS YP_007905456.1 482906896 4599454..4599762 1 NC_021151.1 COG1923 Uncharacterized host factor I protein; RNA-binding protein Hfq 4599762 hfq 1171376004446 hfq Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA-binding protein Hfq YP_007905456.1 4599454 D 1171376 CDS YP_007905457.1 482906897 4599834..4601114 1 NC_021151.1 COG2262 GTPases; GTPase HflX 4601114 1171376004447 STU288_21890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTPase HflX YP_007905457.1 4599834 D 1171376 CDS YP_007905458.1 482906898 4601329..4602588 1 NC_021151.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflK 4602588 1171376004448 STU288_21895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FtsH protease regulator HflK YP_007905458.1 4601329 D 1171376 CDS YP_007905459.1 482906899 4602591..4603595 1 NC_021151.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflC 4603595 1171376004449 STU288_21900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 FtsH protease regulator HflC YP_007905459.1 4602591 D 1171376 CDS YP_007905460.1 482906900 4603674..4603871 1 NC_021151.1 COG3242 Uncharacterized protein conserved in bacteria; inner membrane protein 4603871 1171376004450 STU288_21905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905460.1 4603674 D 1171376 CDS YP_007905461.1 482906901 4603974..4605272 1 NC_021151.1 COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 4605272 1171376004451 STU288_21910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenylosuccinate synthetase YP_007905461.1 4603974 D 1171376 CDS YP_007905462.1 482906902 4605479..4605904 1 NC_021151.1 COG1959 Predicted transcriptional regulator; transcriptional repressor NsrR 4605904 1171376004452 STU288_21915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor NsrR YP_007905462.1 4605479 D 1171376 CDS YP_007905463.1 482906903 4605942..4608380 1 NC_021151.1 COG0557 Exoribonuclease R; exoribonuclease R 4608380 1171376004453 STU288_21920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 exoribonuclease R YP_007905463.1 4605942 D 1171376 CDS YP_007905464.1 482906904 4608471..4609202 1 NC_021151.1 COG0566 rRNA methylases; 23S rRNA (guanosine-2'-O-)-methyltransferase 4609202 1171376004454 STU288_21925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 23S rRNA (guanosine-2'-O-)-methyltransferase YP_007905464.1 4608471 D 1171376 CDS YP_007905465.1 482906905 4609333..4609737 1 NC_021151.1 COG3789 Uncharacterized protein conserved in bacteria; cytoplasmic protein 4609737 1171376004455 STU288_21930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoplasmic protein YP_007905465.1 4609333 D 1171376 CDS YP_007905466.1 482906906 4609752..4610450 1 NC_021151.1 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; putative phage shock protein A 4610450 1171376004456 STU288_21935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative phage shock protein A YP_007905466.1 4609752 D 1171376 CDS YP_007905467.1 482906907 4610450..4611520 1 NC_021151.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component; inner-membrane protein 4611520 1171376004457 STU288_21940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner-membrane protein YP_007905467.1 4610450 D 1171376 CDS YP_007905468.1 482906908 4611517..4612176 1 NC_021151.1 putative cytoplasmic protein 4612176 1171376004458 STU288_21945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905468.1 4611517 D 1171376 CDS YP_007905469.1 482906909 4612194..4612592 1 NC_021151.1 COG3766 Predicted membrane protein; inner membrane protein 4612592 1171376004459 STU288_21950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905469.1 4612194 D 1171376 CDS YP_007905470.1 482906910 4612602..4613240 1 NC_021151.1 hypothetical protein 4613240 1171376004460 STU288_21955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905470.1 4612602 D 1171376 CDS YP_007905471.1 482906911 4613243..4614406 1 NC_021151.1 COG0754 Glutathionylspermidine synthase; hypothetical protein 4614406 1171376004461 STU288_21960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905471.1 4613243 D 1171376 CDS YP_007905472.1 482906912 4614491..4616113 1 NC_021151.1 COG1960 Acyl-CoA dehydrogenases; isovaleryl CoA dehydrogenase 4616113 1171376004462 STU288_21965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isovaleryl CoA dehydrogenase YP_007905472.1 4614491 D 1171376 CDS YP_007905473.1 482906913 complement(4616158..4616433) 1 NC_021151.1 putative inner membrane protein 4616433 1171376004463 STU288_21970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905473.1 4616158 R 1171376 CDS YP_007905474.1 482906914 complement(4616564..4616893) 1 NC_021151.1 biofilm stress and motility protein A 4616893 1171376004464 STU288_21975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 biofilm stress and motility protein A YP_007905474.1 4616564 R 1171376 CDS YP_007905475.1 482906915 4617077..4617826 1 NC_021151.1 COG1073 Hydrolases of the alpha/beta superfamily; esterase 4617826 1171376004465 STU288_21980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 esterase YP_007905475.1 4617077 D 1171376 CDS YP_007905476.1 482906916 complement(4617823..4618578) 1 NC_021151.1 COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor UlaR 4618578 1171376004466 STU288_21985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 transcriptional repressor UlaR YP_007905476.1 4617823 R 1171376 CDS YP_007905477.1 482906917 complement(4618683..4619747) 1 NC_021151.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; L-ascorbate 6-phosphate lactonase 4619747 1171376004467 STU288_21990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-ascorbate 6-phosphate lactonase YP_007905477.1 4618683 R 1171376 CDS YP_007905478.1 482906918 4620110..4621507 1 NC_021151.1 COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 4621507 ulaA 1171376004468 ulaA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system ascorbate-specific transporter subunit IIC YP_007905478.1 4620110 D 1171376 CDS YP_007905479.1 482906919 4621523..4621828 1 NC_021151.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system L-ascorbate-specific transporter subunit IIB 4621828 1171376004469 STU288_22000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system L-ascorbate-specific transporter subunit IIB YP_007905479.1 4621523 D 1171376 CDS YP_007905480.1 482906920 4621838..4622302 1 NC_021151.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system L-ascorbate-specific transporter subunit IIA 4622302 1171376004470 STU288_22005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system L-ascorbate-specific transporter subunit IIA YP_007905480.1 4621838 D 1171376 CDS YP_007905481.1 482906921 4622316..4622966 1 NC_021151.1 COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 4622966 ulaD 1171376004471 ulaD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 3-keto-L-gulonate-6-phosphate decarboxylase YP_007905481.1 4622316 D 1171376 CDS YP_007905482.1 482906922 4622976..4623830 1 NC_021151.1 COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 4623830 1171376004472 STU288_22015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-xylulose 5-phosphate 3-epimerase YP_007905482.1 4622976 D 1171376 CDS YP_007905483.1 482906923 4623830..4624516 1 NC_021151.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 4624516 sgaE 1171376004473 sgaE Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-ribulose-5-phosphate 4-epimerase YP_007905483.1 4623830 D 1171376 CDS YP_007905484.1 482906924 complement(4624645..4624920) 1 NC_021151.1 putative outer membrane protein 4624920 1171376004474 STU288_22025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007905484.1 4624645 R 1171376 CDS YP_007905485.1 482906925 4625391..4625786 1 NC_021151.1 COG0360 Ribosomal protein S6; 30S ribosomal protein S6 4625786 rpsF 1171376004475 rpsF Salmonella enterica subsp. enterica serovar Typhimurium str. U288 30S ribosomal protein S6 YP_007905485.1 4625391 D 1171376 CDS YP_007905486.1 482906926 4625793..4626107 1 NC_021151.1 COG2965 Primosomal replication protein N; primosomal replication protein N 4626107 1171376004476 STU288_22035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 primosomal replication protein N YP_007905486.1 4625793 D 1171376 CDS YP_007905487.1 482906927 4626112..4626339 1 NC_021151.1 COG0238 Ribosomal protein S18; SSU ribosomal protein S18P 4626339 1171376004477 STU288_22040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 SSU ribosomal protein S18P YP_007905487.1 4626112 D 1171376 CDS YP_007905488.1 482906928 4626381..4626830 1 NC_021151.1 COG0359 Ribosomal protein L9; 50S ribosomal protein L9 4626830 rplI 1171376004478 rplI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 50S ribosomal protein L9 YP_007905488.1 4626381 D 1171376 CDS YP_007905489.1 482906929 4626978..4627904 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transporter ybhF 4627904 1171376004479 STU288_22050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transporter ybhF YP_007905489.1 4626978 D 1171376 CDS YP_007905490.1 482906930 complement(4627954..4628589) 1 NC_021151.1 COG3061 Cell envelope opacity-associated protein A; cell envelope opacity-associated protein 4628589 1171376004480 STU288_22055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell envelope opacity-associated protein YP_007905490.1 4627954 R 1171376 CDS YP_007905491.1 482906931 4628809..4629429 1 NC_021151.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; peptidyl-prolyl cis-trans isomerase 4629429 1171376004481 STU288_22060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidyl-prolyl cis-trans isomerase YP_007905491.1 4628809 D 1171376 CDS YP_007905492.1 482906932 4629725..4631134 1 NC_021151.1 COG1113 Gamma-aminobutyrate permease and related permeases; D-alanine/D-serine/glycine permease 4631134 1171376004482 STU288_22065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-alanine/D-serine/glycine permease YP_007905492.1 4629725 D 1171376 CDS YP_007905493.1 482906933 complement(4631246..4631908) 1 NC_021151.1 COG2846 Regulator of cell morphogenesis and NO signaling; iron-sulfur cluster repair di-iron protein 4631908 1171376004483 STU288_22070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 iron-sulfur cluster repair di-iron protein YP_007905493.1 4631246 R 1171376 CDS YP_007905494.1 482906934 complement(4632011..4632976) 1 NC_021151.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Inner membrane protein ytfF 4632976 1171376004484 STU288_22075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Inner membrane protein ytfF YP_007905494.1 4632011 R 1171376 CDS YP_007905495.1 482906935 complement(4633057..4633905) 1 NC_021151.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 4633905 1171376004485 STU288_22080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905495.1 4633057 R 1171376 CDS YP_007905496.1 482906936 4633993..4634379 1 NC_021151.1 COG1733 Predicted transcriptional regulators; Redox-sensing transcriptional regulator QorR 4634379 1171376004486 STU288_22085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Redox-sensing transcriptional regulator QorR YP_007905496.1 4633993 D 1171376 CDS YP_007905497.1 482906937 complement(4634437..4636380) 1 NC_021151.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4636380 cpdB 1171376004487 cpdB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_007905497.1 4634437 R 1171376 CDS YP_007905498.1 482906938 4636648..4637388 1 NC_021151.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; adenosine-3'(2'),5'-bisphosphate nucleotidase 4637388 1171376004488 STU288_22095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_007905498.1 4636648 D 1171376 CDS YP_007905499.1 482906939 complement(4637378..4637935) 1 NC_021151.1 COG3054 Predicted transcriptional regulator; hypothetical protein 4637935 1171376004489 STU288_22100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905499.1 4637378 R 1171376 CDS YP_007905500.1 482906940 4638262..4638468 1 NC_021151.1 putative cytoplasmic protein 4638468 1171376004490 STU288_22105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905500.1 4638262 D 1171376 CDS YP_007905501.1 482906941 complement(4638553..4639896) 1 NC_021151.1 COG1253 Hemolysins and related proteins containing CBS domains; UPF0053 protein 4639896 1171376004491 STU288_22110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0053 protein YP_007905501.1 4638553 R 1171376 CDS YP_007905502.1 482906942 complement(4640079..4640717) 1 NC_021151.1 COG0225 Peptide methionine sulfoxide reductase; methionine sulfoxide reductase A 4640717 1171376004492 STU288_22115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methionine sulfoxide reductase A YP_007905502.1 4640079 R 1171376 CDS YP_007905503.1 482906943 4640930..4642663 1 NC_021151.1 COG0729 Outer membrane protein; surface antigen (D15) 4642663 1171376004493 STU288_22120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 surface antigen (D15) YP_007905503.1 4640930 D 1171376 CDS YP_007905504.1 482906944 4642660..4646439 1 NC_021151.1 COG2911 Uncharacterized protein conserved in bacteria; hypothetical protein 4646439 1171376004494 STU288_22125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905504.1 4642660 D 1171376 CDS YP_007905505.1 482906945 4646442..4646786 1 NC_021151.1 COG2105 Uncharacterized conserved protein; UPF0131 protein ytfP 4646786 1171376004495 STU288_22130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UPF0131 protein ytfP YP_007905505.1 4646442 D 1171376 CDS YP_007905506.1 482906946 complement(4646840..4648048) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; Vesicular glutamate transporter 3 VGluT3 4648048 1171376004496 STU288_22135 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Vesicular glutamate transporter 3 VGluT3 YP_007905506.1 4646840 R 1171376 CDS YP_007905507.1 482906947 complement(4648045..4649208) 1 NC_021151.1 COG3964 Predicted amidohydrolase; metallo-dependent hydrolase 4649208 1171376004497 STU288_22140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 metallo-dependent hydrolase YP_007905507.1 4648045 R 1171376 CDS YP_007905508.1 482906948 complement(4649618..4650148) 1 NC_021151.1 COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 4650148 1171376004498 STU288_22145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inorganic pyrophosphatase YP_007905508.1 4649618 R 1171376 CDS YP_007905509.1 482906949 complement(4650375..4651373) 1 NC_021151.1 COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase 4651373 1171376004499 STU288_22150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose-1,6-bisphosphatase YP_007905509.1 4650375 R 1171376 CDS YP_007905510.1 482906950 4651548..4652927 1 NC_021151.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4652927 1171376004500 STU288_22155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_007905510.1 4651548 D 1171376 CDS YP_007905511.1 482906951 4653418..4654251 1 NC_021151.1 COG1737 Transcriptional regulators; Bifunctional protein glk 4654251 1171376004501 STU288_22160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Bifunctional protein glk YP_007905511.1 4653418 D 1171376 CDS YP_007905512.1 482906952 complement(4654302..4655735) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; sugar transporter 4655735 1171376004502 STU288_22165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar transporter YP_007905512.1 4654302 R 1171376 CDS YP_007905513.1 482906953 4656194..4657630 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; sugar transporter 4657630 1171376004503 STU288_22170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar transporter YP_007905513.1 4656194 D 1171376 CDS YP_007905514.1 482906954 complement(4657983..4658792) 1 NC_021151.1 COG3718 Uncharacterized enzyme involved in inositol metabolism; isomerase 4658792 1171376004504 STU288_22175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isomerase YP_007905514.1 4657983 R 1171376 CDS YP_007905515.1 482906955 complement(4658817..4660322) 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; methylmalonate-semialdehyde dehydrogenase 4660322 1171376004505 STU288_22180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylmalonate-semialdehyde dehydrogenase YP_007905515.1 4658817 R 1171376 CDS YP_007905516.1 482906956 4660820..4661587 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding protein 4661587 1171376004506 STU288_22185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA-binding protein YP_007905516.1 4660820 D 1171376 CDS YP_007905517.1 482906957 4661862..4662767 1 NC_021151.1 COG1082 Sugar phosphate isomerases/epimerases; 2-keto-myo-inositol dehydratase 4662767 1171376004507 STU288_22190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2-keto-myo-inositol dehydratase YP_007905517.1 4661862 D 1171376 CDS YP_007905518.1 482906958 4662786..4663796 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; inositol 2-dehydrogenase 4663796 1171376004508 STU288_22195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inositol 2-dehydrogenase YP_007905518.1 4662786 D 1171376 CDS YP_007905519.1 482906959 4663893..4665236 1 NC_021151.1 COG5520 O-Glycosyl hydrolase; O-glycosyl hydrolase 4665236 1171376004509 STU288_22200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 O-glycosyl hydrolase YP_007905519.1 4663893 D 1171376 CDS YP_007905520.1 482906960 4665237..4666070 1 NC_021151.1 COG1082 Sugar phosphate isomerases/epimerases; myo-inositol catabolism protein 4666070 1171376004510 STU288_22205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 myo-inositol catabolism protein YP_007905520.1 4665237 D 1171376 CDS YP_007905521.1 482906961 complement(4666067..4667233) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter 4667233 1171376004511 STU288_22210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major facilitator superfamily transporter YP_007905521.1 4666067 R 1171376 CDS YP_007905522.1 482906962 complement(4667294..4669225) 1 NC_021151.1 COG0524 Sugar kinases, ribokinase family; IolC protein 4669225 1171376004512 STU288_22215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IolC protein YP_007905522.1 4667294 R 1171376 CDS YP_007905523.1 482906963 complement(4669420..4669533) 1 NC_021151.1 hypothetical protein 4669533 1171376004513 STU288_22220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905523.1 4669420 R 1171376 CDS YP_007905524.1 482906964 4669648..4671588 1 NC_021151.1 COG3962 Acetolactate synthase; putative thiamine pyrophosphate-requiringenzyme 4671588 1171376004514 STU288_22225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative thiamine pyrophosphate-requiringenzyme YP_007905524.1 4669648 D 1171376 CDS YP_007905525.1 482906965 4671817..4672791 1 NC_021151.1 COG0673 Predicted dehydrogenases and related proteins; dehydrogenase 4672791 1171376004515 STU288_22230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dehydrogenase YP_007905525.1 4671817 D 1171376 CDS YP_007905526.1 482906966 4672864..4674090 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate permease 4674090 1171376004516 STU288_22235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-ketoglutarate permease YP_007905526.1 4672864 D 1171376 CDS YP_007905527.1 482906967 4674251..4675066 1 NC_021151.1 COG4130 Predicted sugar epimerase; xylose isomerase 4675066 1171376004517 STU288_22240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 xylose isomerase YP_007905527.1 4674251 D 1171376 CDS YP_007905528.1 482906968 4675119..4676003 1 NC_021151.1 COG1082 Sugar phosphate isomerases/epimerases; endonuclease 4676003 1171376004518 STU288_22245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endonuclease YP_007905528.1 4675119 D 1171376 CDS YP_007905529.1 482906969 complement(4676059..4676610) 1 NC_021151.1 COG3028 Uncharacterized protein conserved in bacteria; hypothetical protein 4676610 1171376004519 STU288_22250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905529.1 4676059 R 1171376 CDS YP_007905530.1 482906970 4676718..4678058 1 NC_021151.1 COG0312 Predicted Zn-dependent proteases and their inactivated homologs; peptidase PmbA 4678058 1171376004520 STU288_22255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptidase PmbA YP_007905530.1 4676718 D 1171376 CDS YP_007905531.1 482906971 4678157..4678543 1 NC_021151.1 COG3783 Soluble cytochrome b562; cytochrome b562 4678543 1171376004521 STU288_22260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytochrome b562 YP_007905531.1 4678157 D 1171376 CDS YP_007905532.1 482906972 4678830..4679159 1 NC_021151.1 putative cytoplasmic protein 4679159 1171376004522 STU288_22265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905532.1 4678830 D 1171376 CDS YP_007905533.1 482906973 4679170..4679532 1 NC_021151.1 hypothetical protein 4679532 1171376004523 STU288_22270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905533.1 4679170 D 1171376 CDS YP_007905534.1 482906974 4679535..4679834 1 NC_021151.1 putative cytoplasmic protein 4679834 1171376004524 STU288_22275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905534.1 4679535 D 1171376 CDS YP_007905535.1 482906975 4679857..4680633 1 NC_021151.1 hypothetical protein 4680633 1171376004525 STU288_22280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905535.1 4679857 D 1171376 CDS YP_007905536.1 482906976 4680645..4681289 1 NC_021151.1 hypothetical protein 4681289 1171376004526 STU288_22285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905536.1 4680645 D 1171376 CDS YP_007905537.1 482906977 4681348..4682481 1 NC_021151.1 COG3964 Predicted amidohydrolase; dihydroorotase 4682481 1171376004527 STU288_22290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydroorotase YP_007905537.1 4681348 D 1171376 CDS YP_007905538.1 482906978 4682465..4683583 1 NC_021151.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; hypothetical protein 4683583 1171376004528 STU288_22295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905538.1 4682465 D 1171376 CDS YP_007905539.1 482906979 4683580..4684320 1 NC_021151.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein 4684320 1171376004529 STU288_22300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905539.1 4683580 D 1171376 CDS YP_007905540.1 482906980 4684337..4686250 1 NC_021151.1 COG3711 Transcriptional antiterminator; putative BglB-family transcriptional antiterminator 4686250 1171376004530 STU288_22305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative BglB-family transcriptional antiterminator YP_007905540.1 4684337 D 1171376 CDS YP_007905541.1 482906981 4686328..4686570 1 NC_021151.1 COG3077 DNA-damage-inducible protein J; bifunctional antitoxin/transcriptional repressor RelB 4686570 1171376004531 STU288_22310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional antitoxin/transcriptional repressor RelB YP_007905541.1 4686328 D 1171376 CDS YP_007905542.1 482906982 4686560..4686844 1 NC_021151.1 COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; toxin 4686844 1171376004532 STU288_22315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 toxin YP_007905542.1 4686560 D 1171376 CDS YP_007905543.1 482906983 complement(4686848..4687312) 1 NC_021151.1 COG0602 Organic radical activating enzymes; anaerobic ribonucleotide reductase-activating protein 4687312 nrdG 1171376004533 nrdG Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic ribonucleotide reductase-activating protein YP_007905543.1 4686848 R 1171376 CDS YP_007905544.1 482906984 complement(4687433..4689571) 1 NC_021151.1 COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; anaerobic ribonucleoside triphosphate reductase 4689571 1171376004534 STU288_22325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 anaerobic ribonucleoside triphosphate reductase YP_007905544.1 4687433 R 1171376 CDS YP_007905545.1 482906985 complement(4689980..4691632) 1 NC_021151.1 COG0366 Glycosidases; trehalose-6-phosphate hydrolase 4691632 1171376004535 STU288_22330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalose-6-phosphate hydrolase YP_007905545.1 4689980 R 1171376 CDS YP_007905548.1 482906988 complement(4693237..4694184) 1 NC_021151.1 COG1609 Transcriptional regulators; trehalose repressor 4694184 treR 1171376004537 treR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 trehalose repressor YP_007905548.1 4693237 R 1171376 CDS YP_007905549.1 482906989 4694568..4697276 1 NC_021151.1 COG0474 Cation transport ATPase; magnesium-transporting ATPase MgtA 4697276 1171376004538 STU288_22350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 magnesium-transporting ATPase MgtA YP_007905549.1 4694568 D 1171376 CDS YP_007905550.1 482906990 complement(4697392..4697838) 1 NC_021151.1 COG2801 Transposase and inactivated derivatives; hypothetical protein 4697838 1171376004539 STU288_22355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905550.1 4697392 R 1171376 CDS YP_007905551.1 482906991 complement(4697913..4698299) 1 NC_021151.1 COG0251 Putative translation initiation inhibitor, yjgF family; Protein tdcF 4698299 1171376004540 STU288_22360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Protein tdcF YP_007905551.1 4697913 R 1171376 CDS YP_007905552.1 482906992 complement(4698376..4698837) 1 NC_021151.1 COG1781 Aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit 4698837 1171376004541 STU288_22365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate carbamoyltransferase regulatory subunit YP_007905552.1 4698376 R 1171376 CDS YP_007905553.1 482906993 complement(4698850..4699785) 1 NC_021151.1 COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 4699785 pyrB 1171376004542 pyrB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate carbamoyltransferase catalytic subunit YP_007905553.1 4698850 R 1171376 CDS YP_007905554.1 482906994 complement(4699821..4699922) 1 NC_021151.1 pyrBI operon leader peptide 4699922 1171376004543 STU288_22375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyrBI operon leader peptide YP_007905554.1 4699821 R 1171376 CDS YP_007905555.1 482906995 complement(4700012..4700500) 1 NC_021151.1 COG1438 Arginine repressor; Arginine repressor 4700500 1171376004544 STU288_22380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Arginine repressor YP_007905555.1 4700012 R 1171376 CDS YP_007905556.1 482906996 4700503..4700601 1 NC_021151.1 hypothetical protein 4700601 1171376004545 STU288_22385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905556.1 4700503 D 1171376 CDS YP_007905557.1 482906997 complement(4700687..4702090) 1 NC_021151.1 COG1288 Predicted membrane protein; hypothetical protein 4702090 1171376004546 STU288_22390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905557.1 4700687 R 1171376 CDS YP_007905558.1 482906998 complement(4702146..4703150) 1 NC_021151.1 COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase 4703150 1171376004547 STU288_22395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ornithine carbamoyltransferase YP_007905558.1 4702146 R 1171376 CDS YP_007905559.1 482906999 complement(4703262..4704194) 1 NC_021151.1 COG0549 Carbamate kinase; carbamate kinase 4704194 1171376004548 STU288_22400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbamate kinase YP_007905559.1 4703262 R 1171376 CDS YP_007905560.1 482907000 complement(4704205..4705425) 1 NC_021151.1 COG2235 Arginine deiminase; arginine deiminase 4705425 1171376004549 STU288_22405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 arginine deiminase YP_007905560.1 4704205 R 1171376 CDS YP_007905561.1 482907001 4706101..4706553 1 NC_021151.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 4706553 1171376004550 STU288_22410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905561.1 4706101 D 1171376 CDS YP_007905562.1 482907002 complement(4706627..4707631) 1 NC_021151.1 COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase subunit I 4707631 1171376004551 STU288_22415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ornithine carbamoyltransferase subunit I YP_007905562.1 4706627 R 1171376 CDS YP_007905563.1 482907003 4707797..4708213 1 NC_021151.1 COG3076 Uncharacterized protein conserved in bacteria; RNase E inhibitor protein 4708213 1171376004552 STU288_22420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNase E inhibitor protein YP_007905563.1 4707797 D 1171376 CDS YP_007905564.1 482907004 4708273..4709037 1 NC_021151.1 COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; tRNA hydroxylase 4709037 1171376004553 STU288_22425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tRNA hydroxylase YP_007905564.1 4708273 D 1171376 CDS YP_007905565.1 482907005 complement(4709271..4709759) 1 NC_021151.1 hypothetical protein 4709759 1171376004554 STU288_22430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905565.1 4709271 R 1171376 CDS YP_007905566.1 482907006 complement(4709866..4710369) 1 NC_021151.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4710369 1171376004555 STU288_22435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 acetyltransferase YP_007905566.1 4709866 R 1171376 CDS YP_007905567.1 482907007 4710564..4711751 1 NC_021151.1 COG4269 Predicted membrane protein; inner membrane protein 4711751 1171376004556 STU288_22440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905567.1 4710564 D 1171376 CDS YP_007905568.1 482907008 complement(4711893..4714748) 1 NC_021151.1 COG0525 Valyl-tRNA synthetase; valyl-tRNA ligase 4714748 valS 1171376004557 valS Salmonella enterica subsp. enterica serovar Typhimurium str. U288 valyl-tRNA ligase YP_007905568.1 4711893 R 1171376 CDS YP_007905569.1 482907009 complement(4714748..4715191) 1 NC_021151.1 COG2927 DNA polymerase III, chi subunit; DNA polymerase III subunit chi 4715191 1171376004558 STU288_22450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit chi YP_007905569.1 4714748 R 1171376 CDS YP_007905570.1 482907010 complement(4715328..4716839) 1 NC_021151.1 COG0260 Leucyl aminopeptidase; multifunctional aminopeptidase A 4716839 1171376004559 STU288_22455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multifunctional aminopeptidase A YP_007905570.1 4715328 R 1171376 CDS YP_007905571.1 482907011 4717234..4718334 1 NC_021151.1 COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease LptF 4718334 1171376004560 STU288_22460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide ABC transporter permease LptF YP_007905571.1 4717234 D 1171376 CDS YP_007905572.1 482907012 4718334..4719416 1 NC_021151.1 COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease 4719416 1171376004561 STU288_22465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipopolysaccharide ABC transporter permease YP_007905572.1 4718334 D 1171376 CDS YP_007905573.1 482907013 4719534..4719629 1 NC_021151.1 hypothetical protein 4719629 1171376004562 STU288_22470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905573.1 4719534 D 1171376 CDS YP_007905574.1 482907014 complement(4719611..4720609) 1 NC_021151.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator IdnR 4720609 1171376004563 STU288_22475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional regulator IdnR YP_007905574.1 4719611 R 1171376 CDS YP_007905575.1 482907015 complement(4720673..4721992) 1 NC_021151.1 COG2610 H+/gluconate symporter and related permeases; Gnt-II system L-idonate transporter IdnT 4721992 1171376004564 STU288_22480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Gnt-II system L-idonate transporter IdnT YP_007905575.1 4720673 R 1171376 CDS YP_007905576.1 482907016 complement(4722054..4722818) 1 NC_021151.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); gluconate 5-dehydrogenase 4722818 1171376004565 STU288_22485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 gluconate 5-dehydrogenase YP_007905576.1 4722054 R 1171376 CDS YP_007905577.1 482907017 complement(4722843..4723874) 1 NC_021151.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-idonate 5-dehydrogenase 4723874 1171376004566 STU288_22490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 L-idonate 5-dehydrogenase YP_007905577.1 4722843 R 1171376 CDS YP_007905578.1 482907018 4724091..4724621 1 NC_021151.1 COG3265 Gluconate kinase; D-gluconate kinase 4724621 idnK 1171376004567 idnK Salmonella enterica subsp. enterica serovar Typhimurium str. U288 D-gluconate kinase YP_007905578.1 4724091 D 1171376 CDS YP_007905579.1 482907019 complement(4724649..4725668) 1 NC_021151.1 COG1064 Zn-dependent alcohol dehydrogenases; Alcohol dehydrogenase 4725668 1171376004568 STU288_22500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Alcohol dehydrogenase YP_007905579.1 4724649 R 1171376 CDS YP_007905580.1 482907020 4726194..4726481 1 NC_021151.1 COG0582 Integrase; putative integrase 4726481 1171376004570 STU288_22505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative integrase YP_007905580.1 4726194 D 1171376 CDS YP_007905581.1 482907021 4726843..4730358 1 NC_021151.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; superfamily I DNA helicase 4730358 1171376004571 STU288_22510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 superfamily I DNA helicase YP_007905581.1 4726843 D 1171376 CDS YP_007905582.1 482907022 4730449..4731444 1 NC_021151.1 COG4127 Uncharacterized conserved protein; restriction endonuclease 4731444 1171376004572 STU288_22515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 restriction endonuclease YP_007905582.1 4730449 D 1171376 CDS YP_007905583.1 482907023 complement(4731557..4733641) 1 NC_021151.1 COG4930 Predicted ATP-dependent Lon-type protease; ATP-dependent Lon protease 4733641 1171376004573 STU288_22520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ATP-dependent Lon protease YP_007905583.1 4731557 R 1171376 CDS YP_007905584.1 482907024 complement(4733652..4736249) 1 NC_021151.1 hypothetical protein 4736249 1171376004574 STU288_22525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905584.1 4733652 R 1171376 CDS YP_007905585.1 482907025 complement(4736252..4737064) 1 NC_021151.1 putative cytoplasmic protein 4737064 1171376004575 STU288_22530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905585.1 4736252 R 1171376 CDS YP_007905586.1 482907026 complement(4737051..4738142) 1 NC_021151.1 COG3839 ABC-type sugar transport systems, ATPase components; sugar/spermidine/putrescine ABC transporter ATPase 4738142 1171376004576 STU288_22535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sugar/spermidine/putrescine ABC transporter ATPase YP_007905586.1 4737051 R 1171376 CDS YP_007905587.1 482907027 complement(4738142..4741819) 1 NC_021151.1 COG1002 Type II restriction enzyme, methylase subunits; putative type II restriction enzyme methylase subunit 4741819 1171376004577 STU288_22540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative type II restriction enzyme methylase subunit YP_007905587.1 4738142 R 1171376 CDS YP_007905588.1 482907028 complement(4741865..4745506) 1 NC_021151.1 putative DNA repair ATPase 4745506 1171376004578 STU288_22545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative DNA repair ATPase YP_007905588.1 4741865 R 1171376 CDS YP_007905589.1 482907029 complement(4745518..4746120) 1 NC_021151.1 hypothetical protein 4746120 1171376004579 STU288_22550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905589.1 4745518 R 1171376 CDS YP_007905590.1 482907030 complement(4746117..4746725) 1 NC_021151.1 inner membrane protein 4746725 1171376004580 STU288_22555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905590.1 4746117 R 1171376 CDS YP_007905591.1 482907031 complement(4746912..4747226) 1 NC_021151.1 hypothetical protein 4747226 1171376004581 STU288_22560 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905591.1 4746912 R 1171376 CDS YP_007905592.1 482907032 complement(4747545..4748261) 1 NC_021151.1 COG0217 Uncharacterized conserved protein; hypothetical protein 4748261 1171376004582 STU288_22565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905592.1 4747545 R 1171376 CDS YP_007905593.1 482907033 complement(4748821..4749567) 1 NC_021151.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 4749567 1171376004583 STU288_22570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905593.1 4748821 R 1171376 CDS YP_007905594.1 482907034 complement(4750457..4750714) 1 NC_021151.1 COG3811 Uncharacterized protein conserved in bacteria; hypothetical protein 4750714 1171376004584 STU288_22575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905594.1 4750457 R 1171376 CDS YP_007905595.1 482907035 4751203..4751811 1 NC_021151.1 COG4332 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 4751811 1171376004585 STU288_22580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905595.1 4751203 D 1171376 CDS YP_007905596.1 482907036 4752063..4753058 1 NC_021151.1 COG1637 Predicted nuclease of the RecB family; hypothetical protein 4753058 1171376004586 STU288_22585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905596.1 4752063 D 1171376 CDS YP_007905597.1 482907037 4753334..4754245 1 NC_021151.1 hypothetical protein 4754245 1171376004587 STU288_22590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905597.1 4753334 D 1171376 CDS YP_007905598.1 482907038 4754450..4754911 1 NC_021151.1 COG3439 Uncharacterized conserved protein; hypothetical protein 4754911 1171376004588 STU288_22595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905598.1 4754450 D 1171376 CDS YP_007905599.1 482907039 complement(4754908..4755582) 1 NC_021151.1 COG0412 Dienelactone hydrolase and related enzymes; hypothetical protein 4755582 1171376004589 STU288_22600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905599.1 4754908 R 1171376 CDS YP_007905600.1 482907040 4755932..4756705 1 NC_021151.1 COG2186 Transcriptional regulators; DNA-binding transcriptional repressor UxuR 4756705 1171376004590 STU288_22605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional repressor UxuR YP_007905600.1 4755932 D 1171376 CDS YP_007905601.1 482907041 complement(4756706..4757719) 1 NC_021151.1 COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase II 4757719 1171376004591 STU288_22610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tryptophanyl-tRNA ligase II YP_007905601.1 4756706 R 1171376 CDS YP_007905602.1 482907042 4758521..4758967 1 NC_021151.1 COG3157 Hemolysin-coregulated protein (uncharacterized); hypothetical protein 4758967 1171376004592 STU288_22615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905602.1 4758521 D 1171376 CDS YP_007905603.1 482907043 4759206..4759940 1 NC_021151.1 COG1794 Aspartate racemase; aspartate racemase 4759940 1171376004593 STU288_22620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aspartate racemase YP_007905603.1 4759206 D 1171376 CDS YP_007905604.1 482907044 complement(4759946..4760854) 1 NC_021151.1 COG0583 Transcriptional regulator; cell density-dependent motility repressor 4760854 1171376004594 STU288_22625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cell density-dependent motility repressor YP_007905604.1 4759946 R 1171376 CDS YP_007905605.1 482907045 complement(4760973..4762145) 1 NC_021151.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; isoaspartyl dipeptidase 4762145 1171376004595 STU288_22630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 isoaspartyl dipeptidase YP_007905605.1 4760973 R 1171376 CDS YP_007905606.1 482907046 complement(4762158..4762619) 1 NC_021151.1 COG0700 Uncharacterized membrane protein; hypothetical protein 4762619 1171376004596 STU288_22635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905606.1 4762158 R 1171376 CDS YP_007905607.1 482907047 complement(4762616..4763287) 1 NC_021151.1 COG3314 Uncharacterized protein conserved in bacteria; hypothetical protein 4763287 1171376004597 STU288_22640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905607.1 4762616 R 1171376 CDS YP_007905608.1 482907048 complement(4764160..4765344) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; putative sugar transporter 4765344 1171376004598 STU288_22645 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative sugar transporter YP_007905608.1 4764160 R 1171376 CDS YP_007905609.1 482907049 complement(4765564..4766835) 1 NC_021151.1 COG2733 Predicted membrane protein; hypothetical protein 4766835 1171376004599 STU288_22650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905609.1 4765564 R 1171376 CDS YP_007905610.1 482907050 complement(4766922..4768163) 1 NC_021151.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtM 4768163 1171376004600 STU288_22655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 multidrug efflux system protein MdtM YP_007905610.1 4766922 R 1171376 CDS YP_007905611.1 482907051 4768642..4769157 1 NC_021151.1 inner membrane protein 4769157 1171376004601 STU288_22660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inner membrane protein YP_007905611.1 4768642 D 1171376 CDS YP_007905612.1 482907052 complement(4769154..4769267) 1 NC_021151.1 hypothetical protein 4769267 1171376004602 STU288_22665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905612.1 4769154 R 1171376 CDS YP_007905613.1 482907053 4769338..4770708 1 NC_021151.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase 4770708 1171376004603 STU288_22670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aldehyde dehydrogenase YP_007905613.1 4769338 D 1171376 CDS YP_007905614.1 482907054 4770913..4771077 1 NC_021151.1 putative cytoplasmic protein 4771077 1171376004604 STU288_22675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905614.1 4770913 D 1171376 CDS YP_007905615.1 482907055 complement(4771152..4771853) 1 NC_021151.1 putative inner membrane protein 4771853 1171376004605 STU288_22680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905615.1 4771152 R 1171376 CDS YP_007905616.1 482907056 complement(4771927..4772259) 1 NC_021151.1 endoribonuclease SymE 4772259 1171376004606 STU288_22685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 endoribonuclease SymE YP_007905616.1 4771927 R 1171376 CDS YP_007905617.1 482907057 complement(4772486..4773895) 1 NC_021151.1 COG0732 Restriction endonuclease S subunits; type I restriction enzyme specificity protein 4773895 1171376004607 STU288_22690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type I restriction enzyme specificity protein YP_007905617.1 4772486 R 1171376 CDS YP_007905618.1 482907058 complement(4773892..4775481) 1 NC_021151.1 COG0286 Type I restriction-modification system methyltransferase subunit; DNA methylase M 4775481 1171376004608 STU288_22695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA methylase M YP_007905618.1 4773892 R 1171376 CDS YP_007905619.1 482907059 complement(4775639..4779148) 1 NC_021151.1 COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme EcoKI subunit R 4779148 hsdR 1171376004609 hsdR Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type I restriction enzyme EcoKI subunit R YP_007905619.1 4775639 R 1171376 CDS YP_007905620.1 482907060 4779346..4780260 1 NC_021151.1 COG1715 Restriction endonuclease; restriction endonuclease 4780260 1171376004610 STU288_22705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 restriction endonuclease YP_007905620.1 4779346 D 1171376 CDS YP_007905621.1 482907061 4780529..4780816 1 NC_021151.1 COG2929 Uncharacterized protein conserved in bacteria; hypothetical protein 4780816 1171376004611 STU288_22710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905621.1 4780529 D 1171376 CDS YP_007905622.1 482907062 4780803..4781105 1 NC_021151.1 COG3514 Uncharacterized protein conserved in bacteria; toxin-antitoxin system, antitoxin component 4781105 1171376004612 STU288_22715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 toxin-antitoxin system, antitoxin component YP_007905622.1 4780803 D 1171376 CDS YP_007905623.1 482907063 complement(4781180..4782136) 1 NC_021151.1 COG0523 Putative GTPases (G3E family); GTP-binding protein YjiA 4782136 1171376004613 STU288_22720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 GTP-binding protein YjiA YP_007905623.1 4781180 R 1171376 CDS YP_007905624.1 482907064 complement(4782147..4782350) 1 NC_021151.1 COG2879 Uncharacterized small protein; hypothetical protein 4782350 1171376004614 STU288_22725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905624.1 4782147 R 1171376 CDS YP_007905625.1 482907065 complement(4782445..4784595) 1 NC_021151.1 COG1966 Carbon starvation protein, predicted membrane protein; putative carbon starvation protein 4784595 1171376004615 STU288_22730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative carbon starvation protein YP_007905625.1 4782445 R 1171376 CDS YP_007905628.1 482907068 4786946..4789711 1 NC_021151.1 COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; Transcriptional regulatory protein levR 4789711 1171376004617 STU288_22745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Transcriptional regulatory protein levR YP_007905628.1 4786946 D 1171376 CDS YP_007905629.1 482907069 4789813..4790235 1 NC_021151.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS permease 4790235 1171376004618 STU288_22750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative PTS permease YP_007905629.1 4789813 D 1171376 CDS YP_007905630.1 482907070 4790250..4790711 1 NC_021151.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system transporter subunit IIB 4790711 1171376004619 STU288_22755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system transporter subunit IIB YP_007905630.1 4790250 D 1171376 CDS YP_007905631.1 482907071 4790737..4791516 1 NC_021151.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 4791516 1171376004620 STU288_22760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 PTS system mannose-specific transporter subunit IIC YP_007905631.1 4790737 D 1171376 CDS YP_007905632.1 482907072 4791494..4792342 1 NC_021151.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; fructose permease iid component 4792342 1171376004621 STU288_22765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fructose permease iid component YP_007905632.1 4791494 D 1171376 CDS YP_007905633.1 482907073 4792355..4793416 1 NC_021151.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; Glucosamine-fructose-6-P aminotransferase 4793416 1171376004622 STU288_22770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glucosamine-fructose-6-P aminotransferase YP_007905633.1 4792355 D 1171376 CDS YP_007905634.1 482907074 4793434..4794444 1 NC_021151.1 COG2222 Predicted phosphosugar isomerases; Glucosamine-fructose-6-P aminotransferase 4794444 1171376004623 STU288_22775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Glucosamine-fructose-6-P aminotransferase YP_007905634.1 4793434 D 1171376 CDS YP_007905635.1 482907075 complement(4794578..4796869) 1 NC_021151.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; phosphoglycerol transferase I 4796869 1171376004624 STU288_22780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerol transferase I YP_007905635.1 4794578 R 1171376 CDS YP_007905636.1 482907076 complement(4797152..4797613) 1 NC_021151.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; hypothetical protein 4797613 1171376004625 STU288_22785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905636.1 4797152 R 1171376 CDS YP_007905637.1 482907077 complement(4797671..4798408) 1 NC_021151.1 COG1484 DNA replication protein; DNA replication protein DnaC 4798408 1171376004626 STU288_22790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA replication protein DnaC YP_007905637.1 4797671 R 1171376 CDS YP_007905638.1 482907078 complement(4798411..4798950) 1 NC_021151.1 primosomal protein DnaI 4798950 1171376004627 STU288_22795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 primosomal protein DnaI YP_007905638.1 4798411 R 1171376 CDS YP_007905639.1 482907079 complement(4799043..4799516) 1 NC_021151.1 COG3610 Uncharacterized conserved protein; hypothetical protein 4799516 1171376004628 STU288_22800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905639.1 4799043 R 1171376 CDS YP_007905640.1 482907080 complement(4799507..4800283) 1 NC_021151.1 COG2966 Uncharacterized conserved protein; hypothetical protein 4800283 1171376004629 STU288_22805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905640.1 4799507 R 1171376 CDS YP_007905641.1 482907081 4800996..4801721 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Putative regulator 4801721 1171376004630 STU288_22810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Putative regulator YP_007905641.1 4800996 D 1171376 CDS YP_007905642.1 482907082 4801733..4802356 1 NC_021151.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator BglJ 4802356 1171376004631 STU288_22815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding transcriptional activator BglJ YP_007905642.1 4801733 D 1171376 CDS YP_007905643.1 482907083 complement(4802407..4802865) 1 NC_021151.1 COG2606 Uncharacterized conserved protein; Prolyl-tRNA synthetase Proline-tRNA ligase 4802865 1171376004632 STU288_22820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Prolyl-tRNA synthetase Proline-tRNA ligase YP_007905643.1 4802407 R 1171376 CDS YP_007905644.1 482907084 complement(4803016..4803804) 1 NC_021151.1 COG4114 Uncharacterized Fe-S protein; ferric iron reductase involved in ferric hydroximate transport 4803804 1171376004633 STU288_22825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ferric iron reductase involved in ferric hydroximate transport YP_007905644.1 4803016 R 1171376 CDS YP_007905645.1 482907085 complement(4803925..4804989) 1 NC_021151.1 COG2199 FOG: GGDEF domain; hypothetical protein 4804989 1171376004634 STU288_22830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905645.1 4803925 R 1171376 CDS YP_007905646.1 482907086 4805240..4805476 1 NC_021151.1 putative inner membrane protein 4805476 1171376004635 STU288_22835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905646.1 4805240 D 1171376 CDS YP_007905647.1 482907087 complement(4806018..4807046) 1 NC_021151.1 COG2813 16S RNA G1207 methylase RsmC; 16S ribosomal RNA m2G1207 methyltransferase 4807046 rsmC 1171376004639 rsmC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 16S ribosomal RNA m2G1207 methyltransferase YP_007905647.1 4806018 R 1171376 CDS YP_007905648.1 482907088 4807149..4807586 1 NC_021151.1 COG3050 DNA polymerase III, psi subunit; DNA polymerase III subunit psi 4807586 1171376004640 STU288_22845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase III subunit psi YP_007905648.1 4807149 D 1171376 CDS YP_007905649.1 482907089 4807531..4807977 1 NC_021151.1 COG0456 Acetyltransferases; ribosomal-protein-alanine N-acetyltransferase 4807977 rimI 1171376004641 rimI Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ribosomal-protein-alanine N-acetyltransferase YP_007905649.1 4807531 D 1171376 CDS YP_007905650.1 482907090 4807999..4808676 1 NC_021151.1 COG1011 Predicted hydrolase (HAD superfamily); dUMP phosphatase 4808676 1171376004642 STU288_22855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dUMP phosphatase YP_007905650.1 4807999 D 1171376 CDS YP_007905651.1 482907091 4808768..4810357 1 NC_021151.1 COG4108 Peptide chain release factor RF-3; peptide chain release factor 3 4810357 prfC 1171376004643 prfC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 peptide chain release factor 3 YP_007905651.1 4808768 D 1171376 CDS YP_007905652.1 482907092 4810759..4811376 1 NC_021151.1 COG2823 Predicted periplasmic or secreted lipoprotein; periplasmic protein 4811376 1171376004644 STU288_22865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 periplasmic protein YP_007905652.1 4810759 D 1171376 CDS YP_007905653.1 482907093 4811505..4811666 1 NC_021151.1 hypothetical protein 4811666 1171376004645 STU288_22870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905653.1 4811505 D 1171376 CDS YP_007905654.1 482907094 4811790..4812863 1 NC_021151.1 COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; patatin 4812863 1171376004646 STU288_22875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 patatin YP_007905654.1 4811790 D 1171376 CDS YP_007905655.1 482907095 4812860..4813633 1 NC_021151.1 COG0084 Mg-dependent DNase; deoxyribonuclease YjjV 4813633 1171376004647 STU288_22880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxyribonuclease YjjV YP_007905655.1 4812860 D 1171376 CDS YP_007905656.1 482907096 complement(4813666..4814529) 1 NC_021151.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase activating enzyme 4814529 1171376004648 STU288_22885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 pyruvate formate lyase activating enzyme YP_007905656.1 4813666 R 1171376 CDS YP_007905657.1 482907097 complement(4814501..4816051) 1 NC_021151.1 COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; hypothetical protein 4816051 1171376004649 STU288_22890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905657.1 4814501 R 1171376 CDS YP_007905658.1 482907098 4816311..4817090 1 NC_021151.1 COG0274 Deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 4817090 1171376004650 STU288_22895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 deoxyribose-phosphate aldolase YP_007905658.1 4816311 D 1171376 CDS YP_007905659.1 482907099 4817214..4818536 1 NC_021151.1 COG0213 Thymidine phosphorylase; thymidine phosphorylase 4818536 deoA 1171376004651 deoA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 thymidine phosphorylase YP_007905659.1 4817214 D 1171376 CDS YP_007905660.1 482907100 4818588..4819811 1 NC_021151.1 COG1015 Phosphopentomutase; phosphopentomutase 4819811 1171376004652 STU288_22905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphopentomutase YP_007905660.1 4818588 D 1171376 CDS YP_007905661.1 482907101 4820021..4820740 1 NC_021151.1 COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 4820740 deoD 1171376004653 deoD Salmonella enterica subsp. enterica serovar Typhimurium str. U288 purine nucleoside phosphorylase YP_007905661.1 4820021 D 1171376 CDS YP_007905662.1 482907102 complement(4820778..4821350) 1 NC_021151.1 hypothetical protein 4821350 1171376004654 STU288_22915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905662.1 4820778 R 1171376 CDS YP_007905663.1 482907103 complement(4821347..4823755) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein 4823755 1171376004655 STU288_22920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein YP_007905663.1 4821347 R 1171376 CDS YP_007905664.1 482907104 complement(4823769..4824476) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein 4824476 1171376004656 STU288_22925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein YP_007905664.1 4823769 R 1171376 CDS YP_007905665.1 482907105 complement(4824554..4825243) 1 NC_021151.1 hypothetical protein 4825243 1171376004657 STU288_22930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905665.1 4824554 R 1171376 CDS YP_007905666.1 482907106 complement(4825291..4825980) 1 NC_021151.1 hypothetical protein 4825980 1171376004658 STU288_22935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905666.1 4825291 R 1171376 CDS YP_007905667.1 482907107 complement(4826293..4827309) 1 NC_021151.1 COG0095 Lipoate-protein ligase A; lipoate-protein ligase A 4827309 lplA 1171376004659 lplA Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lipoate-protein ligase A YP_007905667.1 4826293 R 1171376 CDS YP_007905668.1 482907108 complement(4827343..4827987) 1 NC_021151.1 COG3726 Uncharacterized membrane protein affecting hemolysin expression; hypothetical protein 4827987 1171376004660 STU288_22945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905668.1 4827343 R 1171376 CDS YP_007905669.1 482907109 4828104..4829072 1 NC_021151.1 COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 4829072 serB 1171376004661 serB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoserine phosphatase YP_007905669.1 4828104 D 1171376 CDS YP_007905670.1 482907110 4829156..4830538 1 NC_021151.1 COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 4830538 1171376004662 STU288_22955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA repair protein RadA YP_007905670.1 4829156 D 1171376 CDS YP_007905671.1 482907111 4830689..4831921 1 NC_021151.1 COG1396 Predicted transcriptional regulators; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 4831921 1171376004663 STU288_22960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase YP_007905671.1 4830689 D 1171376 CDS YP_007905672.1 482907112 complement(4832039..4833706) 1 NC_021151.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 4833706 1171376004664 STU288_22965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 ABC transporter ATP-binding protein YP_007905672.1 4832039 R 1171376 CDS YP_007905673.1 482907113 4833915..4835852 1 NC_021151.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 4835852 1171376004665 STU288_22970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 lytic murein transglycosylase YP_007905673.1 4833915 D 1171376 CDS YP_007905674.1 482907114 4835910..4836236 1 NC_021151.1 COG2973 Trp operon repressor; Trp operon repressor 4836236 1171376004666 STU288_22975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Trp operon repressor YP_007905674.1 4835910 D 1171376 CDS YP_007905675.1 482907115 complement(4836338..4836853) 1 NC_021151.1 COG1986 Uncharacterized conserved protein; inosine/xanthosine triphosphatase 4836853 1171376004667 STU288_22980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 inosine/xanthosine triphosphatase YP_007905675.1 4836338 R 1171376 CDS YP_007905676.1 482907116 4836902..4837549 1 NC_021151.1 COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 4837549 1171376004668 STU288_22985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 phosphoglycerate mutase YP_007905676.1 4836902 D 1171376 CDS YP_007905677.1 482907117 complement(4837546..4838415) 1 NC_021151.1 COG2207 AraC-type DNA-binding domain-containing proteins; right oriC-binding transcriptional activator 4838415 1171376004669 STU288_22990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 right oriC-binding transcriptional activator YP_007905677.1 4837546 R 1171376 CDS YP_007905678.1 482907118 4838627..4839100 1 NC_021151.1 COG3045 Uncharacterized protein conserved in bacteria; hypothetical protein 4839100 1171376004670 STU288_22995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905678.1 4838627 D 1171376 CDS YP_007905679.1 482907119 4839113..4839802 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding response regulator CreB 4839802 1171376004671 STU288_23000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA-binding response regulator CreB YP_007905679.1 4839113 D 1171376 CDS YP_007905680.1 482907120 4839802..4841226 1 NC_021151.1 COG0642 Signal transduction histidine kinase; sensory histidine kinase CreC 4841226 1171376004672 STU288_23005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 sensory histidine kinase CreC YP_007905680.1 4839802 D 1171376 CDS YP_007905681.1 482907121 4841284..4842633 1 NC_021151.1 COG4452 Inner membrane protein involved in colicin E2 resistance; hypothetical protein 4842633 1171376004673 STU288_23010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905681.1 4841284 D 1171376 CDS YP_007905682.1 482907122 complement(4842691..4843776) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; major fimbrial protein SthE 4843776 1171376004674 STU288_23015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 major fimbrial protein SthE YP_007905682.1 4842691 R 1171376 CDS YP_007905683.1 482907123 complement(4843817..4844374) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein SthD 4844374 1171376004675 STU288_23020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein SthD YP_007905683.1 4843817 R 1171376 CDS YP_007905684.1 482907124 complement(4844392..4846929) 1 NC_021151.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein SthC 4846929 1171376004676 STU288_23025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein SthC YP_007905684.1 4844392 R 1171376 CDS YP_007905685.1 482907125 complement(4846975..4847658) 1 NC_021151.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial assembly chaperone SthB 4847658 1171376004677 STU288_23030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial assembly chaperone SthB YP_007905685.1 4846975 R 1171376 CDS YP_007905686.1 482907126 complement(4847729..4848274) 1 NC_021151.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein SthA 4848274 1171376004678 STU288_23035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein SthA YP_007905686.1 4847729 R 1171376 CDS YP_007905687.1 482907127 complement(4848613..4849284) 1 NC_021151.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; hypothetical protein 4849284 1171376004679 STU288_23040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905687.1 4848613 R 1171376 CDS YP_007905688.1 482907128 complement(4849669..4849983) 1 NC_021151.1 hypothetical protein 4849983 1171376004680 STU288_23045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905688.1 4849669 R 1171376 CDS YP_007905689.1 482907129 complement(4850250..4850966) 1 NC_021151.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 4850966 1171376004681 STU288_23050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 two-component response regulator YP_007905689.1 4850250 R 1171376 CDS YP_007905690.1 482907130 4851602..4852288 1 NC_021151.1 COG0565 rRNA methylase; RNA methyltransferase 4852288 1171376004682 STU288_23055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RNA methyltransferase YP_007905690.1 4851602 D 1171376 CDS YP_007905735.1 482907134 complement(84..1025) 1 NC_021155.1 hypothetical protein 1025 1171376004683 STU288_1p00005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905735.1 84 R 1171376 CDS YP_007905736.1 482907135 complement(1090..1356) 1 NC_021155.1 hypothetical protein 1356 1171376004684 STU288_1p00010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905736.1 1090 R 1171376 CDS YP_007905737.1 482907136 1987..2190 1 NC_021155.1 hypothetical protein 2190 1171376004685 STU288_1p00015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905737.1 1987 D 1171376 CDS YP_007905738.1 482907137 2172..2471 1 NC_021155.1 hypothetical protein 2471 1171376004686 STU288_1p00020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905738.1 2172 D 1171376 CDS YP_007905739.1 482907138 complement(2484..2585) 1 NC_021155.1 hypothetical protein 2585 1171376004687 STU288_1p00025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905739.1 2484 R 1171376 CDS YP_007905740.1 482907139 complement(2611..3111) 1 NC_021155.1 COG4734 Antirestriction protein; hypothetical protein 3111 1171376004688 STU288_1p00030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905740.1 2611 R 1171376 CDS YP_007905741.1 482907140 3242..3412 1 NC_021155.1 hypothetical protein 3412 1171376004689 STU288_1p00035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905741.1 3242 D 1171376 CDS YP_007905742.1 482907141 complement(3574..4170) 1 NC_021155.1 hypothetical protein 4170 1171376004690 STU288_1p00040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905742.1 3574 R 1171376 CDS YP_007905743.1 482907142 complement(4167..4886) 1 NC_021155.1 plasmid SOS inhibition protein A 4886 1171376004691 STU288_1p00045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid SOS inhibition protein A YP_007905743.1 4167 R 1171376 CDS YP_007905744.1 482907143 complement(4883..5317) 1 NC_021155.1 plasmid SOS inhibition protein B 5317 psiB 1171376004692 psiB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid SOS inhibition protein B YP_007905744.1 4883 R 1171376 CDS YP_007905745.1 482907144 complement(5372..7330) 1 NC_021155.1 COG1475 Predicted transcriptional regulators; hypothetical protein 7330 1171376004693 STU288_1p00055 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905745.1 5372 R 1171376 CDS YP_007905746.1 482907145 complement(7389..7622) 1 NC_021155.1 hypothetical protein 7622 1171376004694 STU288_1p00060 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905746.1 7389 R 1171376 CDS YP_007905747.1 482907146 complement(7680..8207) 1 NC_021155.1 COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 8207 1171376004695 STU288_1p00065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 single-stranded DNA-binding protein YP_007905747.1 7680 R 1171376 CDS YP_007905748.1 482907147 complement(8438..8566) 1 NC_021155.1 hypothetical protein 8566 1171376004696 STU288_1p00070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905748.1 8438 R 1171376 CDS YP_007905749.1 482907148 complement(8977..9168) 1 NC_021155.1 hypothetical protein 9168 1171376004697 STU288_1p00075 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905749.1 8977 R 1171376 CDS YP_007905750.1 482907149 complement(9165..9587) 1 NC_021155.1 hypothetical protein 9587 1171376004698 STU288_1p00080 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905750.1 9165 R 1171376 CDS YP_007905751.1 482907150 complement(9634..10059) 1 NC_021155.1 putative antirestriction protein 10059 1171376004699 STU288_1p00085 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative antirestriction protein YP_007905751.1 9634 R 1171376 CDS YP_007905752.1 482907151 10191..10361 1 NC_021155.1 hypothetical protein 10361 1171376004700 STU288_1p00090 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905752.1 10191 D 1171376 CDS YP_007905753.1 482907152 complement(10477..11247) 1 NC_021155.1 hypothetical protein 11247 1171376004701 STU288_1p00095 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905753.1 10477 R 1171376 CDS YP_007905754.1 482907153 complement(11298..11732) 1 NC_021155.1 hypothetical protein 11732 1171376004702 STU288_1p00100 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905754.1 11298 R 1171376 CDS YP_007905755.1 482907154 complement(11744..11965) 1 NC_021155.1 hypothetical protein 11965 1171376004703 STU288_1p00105 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905755.1 11744 R 1171376 CDS YP_007905756.1 482907155 complement(11966..12649) 1 NC_021155.1 COG0863 DNA modification methylase; methylase 12649 1171376004704 STU288_1p00110 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylase YP_007905756.1 11966 R 1171376 CDS YP_007905757.1 482907156 complement(12726..12977) 1 NC_021155.1 hypothetical protein 12977 1171376004705 STU288_1p00115 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905757.1 12726 R 1171376 CDS YP_007905758.1 482907157 complement(13035..13961) 1 NC_021155.1 hypothetical protein 13961 1171376004706 STU288_1p00120 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905758.1 13035 R 1171376 CDS YP_007905759.1 482907158 14355..14603 1 NC_021155.1 hypothetical protein 14603 1171376004707 STU288_1p00125 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905759.1 14355 D 1171376 CDS YP_007905760.1 482907159 14600..15037 1 NC_021155.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Error-prone repair protein UmuD 15037 1171376004708 STU288_1p00130 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 Error-prone repair protein UmuD YP_007905760.1 14600 D 1171376 CDS YP_007905761.1 482907160 15037..16311 1 NC_021155.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 16311 umuC 1171376004709 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase V subunit UmuC YP_007905761.1 15037 D 1171376 CDS YP_007905762.1 482907161 complement(16313..16729) 1 NC_021155.1 plasmid stability protein 16729 1171376004710 STU288_1p00140 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid stability protein YP_007905762.1 16313 R 1171376 CDS YP_007905763.1 482907162 complement(16722..17702) 1 NC_021155.1 COG0443 Molecular chaperone; plasmid segregation protein ParM 17702 1171376004711 STU288_1p00145 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid segregation protein ParM YP_007905763.1 16722 R 1171376 CDS YP_007905764.1 482907163 complement(18116..18424) 1 NC_021155.1 putative 60 kDa chaperonin 18424 1171376004712 STU288_1p00150 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative 60 kDa chaperonin YP_007905764.1 18116 R 1171376 CDS YP_007905765.1 482907164 complement(18511..19155) 1 NC_021155.1 COG1192 ATPases involved in chromosome partitioning; putative plasmid partitioning and stability protein 19155 1171376004713 STU288_1p00155 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative plasmid partitioning and stability protein YP_007905765.1 18511 R 1171376 CDS YP_007905766.1 482907165 complement(19335..20114) 1 NC_021155.1 COG0582 Integrase; resolvase 20114 1171376004714 STU288_1p00160 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resolvase YP_007905766.1 19335 R 1171376 CDS YP_007905767.1 482907166 complement(20116..20568) 1 NC_021155.1 hypothetical protein 20568 1171376004715 STU288_1p00165 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905767.1 20116 R 1171376 CDS YP_007905768.1 482907167 complement(20673..20846) 1 NC_021155.1 hypothetical protein 20846 1171376004716 STU288_1p00170 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905768.1 20673 R 1171376 CDS YP_007905769.1 482907168 21095..21583 1 NC_021155.1 hypothetical protein 21583 1171376004717 STU288_1p00175 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905769.1 21095 D 1171376 CDS YP_007905770.1 482907169 complement(21834..21947) 1 NC_021155.1 hypothetical protein 21947 1171376004718 STU288_1p00180 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905770.1 21834 R 1171376 CDS YP_007905771.1 482907170 22067..22363 1 NC_021155.1 hypothetical protein 22363 1171376004719 STU288_1p00185 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905771.1 22067 D 1171376 CDS YP_007905772.1 482907171 22869..23846 1 NC_021155.1 DNA replication 23846 1171376004720 STU288_1p00190 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA replication YP_007905772.1 22869 D 1171376 CDS YP_007905773.1 482907172 complement(24105..24287) 1 NC_021155.1 COG0582 Integrase; resolvase 24287 1171376004721 STU288_1p00195 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resolvase YP_007905773.1 24105 R 1171376 CDS YP_007905774.1 482907173 complement(24718..24927) 1 NC_021155.1 COG3111 Uncharacterized conserved protein; hypothetical protein 24927 1171376004722 STU288_1p00200 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905774.1 24718 R 1171376 CDS YP_007905775.1 482907174 25818..26120 1 NC_021155.1 fimbriae biosynthesis regulatory protein 26120 1171376004723 STU288_1p00205 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbriae biosynthesis regulatory protein YP_007905775.1 25818 D 1171376 CDS YP_007905776.1 482907175 26395..26913 1 NC_021155.1 fimbrial protein PefA 26913 1171376004724 STU288_1p00210 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial protein PefA YP_007905776.1 26395 D 1171376 CDS YP_007905777.1 482907176 complement(26941..27057) 1 NC_021155.1 hypothetical protein 27057 1171376004725 STU288_1p00215 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905777.1 26941 R 1171376 CDS YP_007905778.1 482907177 27141..29549 1 NC_021155.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein PefC 29549 1171376004726 STU288_1p00220 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial outer membrane usher protein PefC YP_007905778.1 27141 D 1171376 CDS YP_007905779.1 482907178 29542..30234 1 NC_021155.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein PefD 30234 1171376004727 STU288_1p00225 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 fimbrial chaperone protein PefD YP_007905779.1 29542 D 1171376 CDS YP_007905780.1 482907179 30252..30806 1 NC_021155.1 putative outer membrane protein 30806 1171376004728 STU288_1p00230 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007905780.1 30252 D 1171376 CDS YP_007905781.1 482907180 32366..32578 1 NC_021155.1 plasmid-encoded fimbriae 32578 1171376004729 STU288_1p00235 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid-encoded fimbriae YP_007905781.1 32366 D 1171376 CDS YP_007905782.1 482907181 32563..32913 1 NC_021155.1 COG2771 DNA-binding HTH domain-containing proteins; putative luxR family bacterial regulatory protein 32913 1171376004730 STU288_1p00240 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative luxR family bacterial regulatory protein YP_007905782.1 32563 D 1171376 CDS YP_007905783.1 482907182 32892..33035 1 NC_021155.1 hypothetical protein 33035 1171376004731 STU288_1p00245 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905783.1 32892 D 1171376 CDS YP_007905784.1 482907183 complement(33248..34819) 1 NC_021155.1 COG3436 Transposase and inactivated derivatives; issfl4 orf3 34819 1171376004732 STU288_1p00250 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 issfl4 orf3 YP_007905784.1 33248 R 1171376 CDS YP_007905785.1 482907184 complement(34839..35186) 1 NC_021155.1 COG3436 Transposase and inactivated derivatives; putative transposase subunit 35186 1171376004733 STU288_1p00255 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase subunit YP_007905785.1 34839 R 1171376 CDS YP_007905786.1 482907185 complement(35186..35863) 1 NC_021155.1 COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA 35863 1171376004734 STU288_1p00260 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IS66 family transposase orfA YP_007905786.1 35186 R 1171376 CDS YP_007905787.1 482907186 35904..36518 1 NC_021155.1 COG0526 Thiol-disulfide isomerase and thioredoxins; putative thiol-disulfide isomerase or thioredoxin 36518 1171376004735 STU288_1p00265 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative thiol-disulfide isomerase or thioredoxin YP_007905787.1 35904 D 1171376 CDS YP_007905788.1 482907187 36508..36654 1 NC_021155.1 hypothetical protein 36654 1171376004736 STU288_1p00270 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905788.1 36508 D 1171376 CDS YP_007905789.1 482907188 36705..37550 1 NC_021155.1 COG3204 Uncharacterized protein conserved in bacteria; putative outer membrane protein 37550 1171376004737 STU288_1p00275 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative outer membrane protein YP_007905789.1 36705 D 1171376 CDS YP_007905790.1 482907189 37640..38197 1 NC_021155.1 COG3637 Opacity protein and related surface antigens; resistance to complement killing 38197 1171376004738 STU288_1p00280 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resistance to complement killing YP_007905790.1 37640 D 1171376 CDS YP_007905791.1 482907190 38251..38370 1 NC_021155.1 hypothetical protein 38370 1171376004739 STU288_1p00285 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905791.1 38251 D 1171376 CDS YP_007905792.1 482907191 38464..39222 1 NC_021155.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative bacterial regulatory protein (AraC family) 39222 1171376004740 STU288_1p00290 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative bacterial regulatory protein (AraC family) YP_007905792.1 38464 D 1171376 CDS YP_007905793.1 482907192 complement(39319..39459) 1 NC_021155.1 COG3204 Uncharacterized protein conserved in bacteria; outer membrane protein 39459 1171376004741 STU288_1p00295 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 outer membrane protein YP_007905793.1 39319 R 1171376 CDS YP_007905794.1 482907193 39508..39639 1 NC_021155.1 hypothetical protein 39639 1171376004742 STU288_1p00300 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905794.1 39508 D 1171376 CDS YP_007905795.1 482907194 complement(40173..40388) 1 NC_021155.1 hypothetical protein 40388 1171376004743 STU288_1p00305 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905795.1 40173 R 1171376 CDS YP_007905796.1 482907195 complement(40400..41281) 1 NC_021155.1 replication protein 41281 1171376004744 STU288_1p00310 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein YP_007905796.1 40400 R 1171376 CDS YP_007905797.1 482907196 complement(41262..41339) 1 NC_021155.1 RepA leader peptide Tap 41339 1171376004745 STU288_1p00315 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 RepA leader peptide Tap YP_007905797.1 41262 R 1171376 CDS YP_007905798.1 482907197 complement(41589..41834) 1 NC_021155.1 replication protein 41834 1171376004746 STU288_1p00320 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein YP_007905798.1 41589 R 1171376 CDS YP_007905799.1 482907198 complement(42034..42477) 1 NC_021155.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; hypothetical protein 42477 1171376004747 STU288_1p00325 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905799.1 42034 R 1171376 CDS YP_007905800.1 482907199 complement(42643..42795) 1 NC_021155.1 putative cytoplasmic protein 42795 1171376004748 STU288_1p00330 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905800.1 42643 R 1171376 CDS YP_007905801.1 482907200 complement(42811..43095) 1 NC_021155.1 putative cytoplasmic protein 43095 1171376004749 STU288_1p00335 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905801.1 42811 R 1171376 CDS YP_007905802.1 482907201 complement(43210..43773) 1 NC_021155.1 conjugal transfer fertility inhibition protein FinO 43773 1171376004750 STU288_1p00340 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer fertility inhibition protein FinO YP_007905802.1 43210 R 1171376 CDS YP_007905803.1 482907202 complement(43828..44568) 1 NC_021155.1 conjugal transfer pilus acetylation protein TraX 44568 1171376004751 STU288_1p00345 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus acetylation protein TraX YP_007905803.1 43828 R 1171376 CDS YP_007905804.1 482907203 complement(44588..49846) 1 NC_021155.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; conjugal transfer nickase/helicase TraI 49846 1171376004752 STU288_1p00350 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer nickase/helicase TraI YP_007905804.1 44588 R 1171376 CDS YP_007905805.1 482907204 49928..50155 1 NC_021155.1 COG4456 Virulence-associated protein and related proteins; cytoplasmic protein 50155 1171376004753 STU288_1p00355 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 cytoplasmic protein YP_007905805.1 49928 D 1171376 CDS YP_007905806.1 482907205 50155..50553 1 NC_021155.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein 50553 1171376004754 STU288_1p00360 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid maintenance protein YP_007905806.1 50155 D 1171376 CDS YP_007905807.1 482907206 complement(50562..52823) 1 NC_021155.1 COG3505 Type IV secretory pathway, VirD4 components; conjugal transfer protein TraD 52823 1171376004755 STU288_1p00365 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraD YP_007905807.1 50562 R 1171376 CDS YP_007905808.1 482907207 complement(53200..53931) 1 NC_021155.1 conjugal transfer surface exclusion protein TraT 53931 1171376004756 STU288_1p00370 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer surface exclusion protein TraT YP_007905808.1 53200 R 1171376 CDS YP_007905809.1 482907208 complement(53967..54455) 1 NC_021155.1 conjugative transfer surface exclusion protein 54455 1171376004757 STU288_1p00375 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugative transfer surface exclusion protein YP_007905809.1 53967 R 1171376 CDS YP_007905810.1 482907209 complement(54477..57299) 1 NC_021155.1 conjugal transfer mating pair stabilization protein TraG 57299 1171376004758 STU288_1p00380 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer mating pair stabilization protein TraG YP_007905810.1 54477 R 1171376 CDS YP_007905811.1 482907210 complement(57296..58678) 1 NC_021155.1 conjugal transfer pilus assembly protein TraH 58678 1171376004759 STU288_1p00385 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraH YP_007905811.1 57296 R 1171376 CDS YP_007905812.1 482907211 complement(58668..59216) 1 NC_021155.1 conjugal transfer protein TrbB 59216 1171376004760 STU288_1p00390 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TrbB YP_007905812.1 58668 R 1171376 CDS YP_007905813.1 482907212 complement(59203..59496) 1 NC_021155.1 conjugal transfer pilin chaperone TraQ 59496 1171376004761 STU288_1p00395 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilin chaperone TraQ YP_007905813.1 59203 R 1171376 CDS YP_007905814.1 482907213 complement(59710..60459) 1 NC_021155.1 conjugal pilus assembly protein TraF 60459 1171376004762 STU288_1p00400 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal pilus assembly protein TraF YP_007905814.1 59710 R 1171376 CDS YP_007905815.1 482907214 complement(60471..60677) 1 NC_021155.1 conjugal transfer protein TrbE 60677 1171376004763 STU288_1p00405 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TrbE YP_007905815.1 60471 R 1171376 CDS YP_007905816.1 482907215 complement(60697..62523) 1 NC_021155.1 conjugal transfer mating pair stabilization protein TraN 62523 1171376004764 STU288_1p00410 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer mating pair stabilization protein TraN YP_007905816.1 60697 R 1171376 CDS YP_007905817.1 482907216 complement(62520..62939) 1 NC_021155.1 putative HNH endonuclease 62939 1171376004765 STU288_1p00415 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative HNH endonuclease YP_007905817.1 62520 R 1171376 CDS YP_007905818.1 482907217 complement(62976..63614) 1 NC_021155.1 conjugal transfer pilus assembly protein TrbC 63614 1171376004766 STU288_1p00420 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TrbC YP_007905818.1 62976 R 1171376 CDS YP_007905819.1 482907218 complement(63599..63901) 1 NC_021155.1 conjugal transfer protein 63901 1171376004767 STU288_1p00425 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein YP_007905819.1 63599 R 1171376 CDS YP_007905820.1 482907219 complement(63926..64918) 1 NC_021155.1 conjugal transfer pilus assembly protein TraU 64918 1171376004768 STU288_1p00430 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraU YP_007905820.1 63926 R 1171376 CDS YP_007905821.1 482907220 complement(64915..65547) 1 NC_021155.1 conjugal transfer pilus assembly protein TraW 65547 1171376004769 STU288_1p00435 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraW YP_007905821.1 64915 R 1171376 CDS YP_007905822.1 482907221 complement(65544..65930) 1 NC_021155.1 conjugal transfer protein TrbI 65930 1171376004770 STU288_1p00440 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TrbI YP_007905822.1 65544 R 1171376 CDS YP_007905823.1 482907222 complement(65905..68553) 1 NC_021155.1 COG3451 Type IV secretory pathway, VirB4 components; conjugal transfer ATP-binding protein TraC 68553 1171376004771 STU288_1p00445 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer ATP-binding protein TraC YP_007905823.1 65905 R 1171376 CDS YP_007905824.1 482907223 complement(68569..68832) 1 NC_021155.1 putative inner membrane protein 68832 1171376004772 STU288_1p00450 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905824.1 68569 R 1171376 CDS YP_007905825.1 482907224 complement(68833..68952) 1 NC_021155.1 hypothetical protein 68952 1171376004773 STU288_1p00455 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905825.1 68833 R 1171376 CDS YP_007905826.1 482907225 complement(68949..69416) 1 NC_021155.1 conjugative transfer protein 69416 1171376004774 STU288_1p00460 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugative transfer protein YP_007905826.1 68949 R 1171376 CDS YP_007905827.1 482907226 complement(69409..69630) 1 NC_021155.1 COG1734 DnaK suppressor protein; conjugal transfer protein TraR 69630 1171376004775 STU288_1p00465 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraR YP_007905827.1 69409 R 1171376 CDS YP_007905828.1 482907227 complement(69765..70280) 1 NC_021155.1 conjugal transfer protein TraV 70280 1171376004776 STU288_1p00470 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraV YP_007905828.1 69765 R 1171376 CDS YP_007905829.1 482907228 complement(70277..70513) 1 NC_021155.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; conjugal transfer protein TrbD 70513 1171376004777 STU288_1p00475 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TrbD YP_007905829.1 70277 R 1171376 CDS YP_007905830.1 482907229 complement(70500..71096) 1 NC_021155.1 conjugal transfer protein TraP 71096 1171376004778 STU288_1p00480 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraP YP_007905830.1 70500 R 1171376 CDS YP_007905831.1 482907230 complement(71086..72507) 1 NC_021155.1 COG0419 ATPase involved in DNA repair; conjugal transfer pilus assembly protein TraB 72507 1171376004779 STU288_1p00485 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraB YP_007905831.1 71086 R 1171376 CDS YP_007905832.1 482907231 complement(72507..73247) 1 NC_021155.1 conjugal transfer protein TraK 73247 1171376004780 STU288_1p00490 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraK YP_007905832.1 72507 R 1171376 CDS YP_007905833.1 482907232 complement(73234..73800) 1 NC_021155.1 conjugal transfer pilus assembly protein TraE 73800 1171376004781 STU288_1p00495 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraE YP_007905833.1 73234 R 1171376 CDS YP_007905834.1 482907233 complement(73822..74133) 1 NC_021155.1 conjugal transfer pilus assembly protein TraL 74133 1171376004782 STU288_1p00500 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilus assembly protein TraL YP_007905834.1 73822 R 1171376 CDS YP_007905835.1 482907234 complement(74148..74510) 1 NC_021155.1 conjugal transfer pilin subunit TraA 74510 1171376004783 STU288_1p00505 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer pilin subunit TraA YP_007905835.1 74148 R 1171376 CDS YP_007905836.1 482907235 complement(74552..74779) 1 NC_021155.1 conjugal transfer protein TraY 74779 1171376004784 STU288_1p00510 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraY YP_007905836.1 74552 R 1171376 CDS YP_007905837.1 482907236 complement(74873..75559) 1 NC_021155.1 COG0197 Ribosomal protein L16/L10E; conjugative transfer regulatory protein 75559 1171376004785 STU288_1p00515 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugative transfer regulatory protein YP_007905837.1 74873 R 1171376 CDS YP_007905838.1 482907237 complement(75752..76132) 1 NC_021155.1 conjugal transfer protein TraM 76132 1171376004786 STU288_1p00520 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TraM YP_007905838.1 75752 R 1171376 CDS YP_007905839.1 482907238 76547..77017 1 NC_021155.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative transglycosylase 77017 1171376004787 STU288_1p00525 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transglycosylase YP_007905839.1 76547 D 1171376 CDS YP_007905840.1 482907239 complement(77329..77499) 1 NC_021155.1 hypothetical protein 77499 1171376004788 STU288_1p00530 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905840.1 77329 R 1171376 CDS YP_007905841.1 482907240 complement(77541..77831) 1 NC_021155.1 hypothetical protein 77831 1171376004789 STU288_1p00535 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905841.1 77541 R 1171376 CDS YP_007905842.1 482907241 complement(77878..78075) 1 NC_021155.1 hypothetical protein 78075 1171376004790 STU288_1p00540 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905842.1 77878 R 1171376 CDS YP_007905843.1 482907242 complement(78250..78420) 1 NC_021155.1 hypothetical protein 78420 1171376004791 STU288_1p00545 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905843.1 78250 R 1171376 CDS YP_007905844.1 482907243 complement(78494..78622) 1 NC_021155.1 hypothetical protein 78622 1171376004792 STU288_1p00550 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905844.1 78494 R 1171376 CDS YP_007905845.1 482907244 complement(78657..79394) 1 NC_021155.1 plasmid SOS inhibition protein A 79394 1171376004793 STU288_1p00555 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid SOS inhibition protein A YP_007905845.1 78657 R 1171376 CDS YP_007905846.1 482907245 complement(79391..79822) 1 NC_021155.1 plasmid SOS inhibition protein B 79822 psiB 1171376004794 psiB Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid SOS inhibition protein B YP_007905846.1 79391 R 1171376 CDS YP_007905847.1 482907246 complement(79865..81862) 1 NC_021155.1 COG1475 Predicted transcriptional regulators; putative ParB-like nuclease domain protein 81862 1171376004795 STU288_1p00565 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative ParB-like nuclease domain protein YP_007905847.1 79865 R 1171376 CDS YP_007905848.1 482907247 complement(81931..82173) 1 NC_021155.1 putative cytoplasmic protein 82173 1171376004796 STU288_1p00570 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905848.1 81931 R 1171376 CDS YP_007905849.1 482907248 complement(82228..82746) 1 NC_021155.1 COG0629 Single-stranded DNA-binding protein; single-stranded binding protein 82746 1171376004797 STU288_1p00575 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 single-stranded binding protein YP_007905849.1 82228 R 1171376 CDS YP_007905850.1 482907249 83241..83513 1 NC_021155.1 hypothetical protein 83513 1171376004798 STU288_1p00580 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905850.1 83241 D 1171376 CDS YP_007905851.1 482907250 complement(83471..83794) 1 NC_021155.1 putative inner membrane protein 83794 1171376004799 STU288_1p00585 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905851.1 83471 R 1171376 CDS YP_007905852.1 482907251 complement(84030..84464) 1 NC_021155.1 putative cytoplasmic protein 84464 1171376004800 STU288_1p00590 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905852.1 84030 R 1171376 CDS YP_007905853.1 482907252 complement(84531..84965) 1 NC_021155.1 putative cytoplasmic protein 84965 1171376004801 STU288_1p00595 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905853.1 84531 R 1171376 CDS YP_007905854.1 482907253 85037..85480 1 NC_021155.1 hypothetical protein 85480 1171376004802 STU288_1p00600 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905854.1 85037 D 1171376 CDS YP_007905855.1 482907254 complement(85461..86225) 1 NC_021155.1 putative inner membrane protein 86225 1171376004803 STU288_1p00605 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905855.1 85461 R 1171376 CDS YP_007905856.1 482907255 complement(86297..86707) 1 NC_021155.1 hypothetical protein 86707 1171376004804 STU288_1p00610 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905856.1 86297 R 1171376 CDS YP_007905857.1 482907256 complement(86766..86987) 1 NC_021155.1 putative cytoplasmic protein 86987 1171376004805 STU288_1p00615 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905857.1 86766 R 1171376 CDS YP_007905858.1 482907257 complement(86987..87667) 1 NC_021155.1 COG0863 DNA modification methylase; methylase 87667 1171376004806 STU288_1p00620 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 methylase YP_007905858.1 86987 R 1171376 CDS YP_007905859.1 482907258 complement(88049..88405) 1 NC_021155.1 putative cytoplasmic protein 88405 1171376004807 STU288_1p00625 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905859.1 88049 R 1171376 CDS YP_007905860.1 482907259 complement(88398..88868) 1 NC_021155.1 hypothetical protein 88868 1171376004808 STU288_1p00630 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905860.1 88398 R 1171376 CDS YP_007905861.1 482907260 complement(89237..89380) 1 NC_021155.1 hypothetical protein 89380 1171376004809 STU288_1p00635 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905861.1 89237 R 1171376 CDS YP_007905862.1 482907261 89379..89801 1 NC_021155.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 89801 1171376004810 STU288_1p00640 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905862.1 89379 D 1171376 CDS YP_007905863.1 482907262 89801..91075 1 NC_021155.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 91075 umuC 1171376004811 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. U288 DNA polymerase V subunit UmuC YP_007905863.1 89801 D 1171376 CDS YP_007905864.1 482907263 complement(91157..92131) 1 NC_021155.1 COG1475 Predicted transcriptional regulators; plasmid partition protein B 92131 1171376004812 STU288_1p00650 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid partition protein B YP_007905864.1 91157 R 1171376 CDS YP_007905865.1 482907264 complement(92131..93336) 1 NC_021155.1 COG1192 ATPases involved in chromosome partitioning; plasmid partition protein A 93336 1171376004813 STU288_1p00655 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid partition protein A YP_007905865.1 92131 R 1171376 CDS YP_007905866.1 482907265 93751..94692 1 NC_021155.1 COG5464 Uncharacterized conserved protein; putative cytoplasmic protein 94692 1171376004814 STU288_1p00660 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905866.1 93751 D 1171376 CDS YP_007905867.1 482907266 complement(94724..95290) 1 NC_021155.1 hypothetical protein 95290 1171376004815 STU288_1p00665 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905867.1 94724 R 1171376 CDS YP_007905868.1 482907267 complement(95347..95763) 1 NC_021155.1 hypothetical protein 95763 1171376004816 STU288_1p00670 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905868.1 95347 R 1171376 CDS YP_007905869.1 482907268 complement(95735..95854) 1 NC_021155.1 hypothetical protein 95854 1171376004817 STU288_1p00675 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905869.1 95735 R 1171376 CDS YP_007905870.1 482907269 complement(95866..96375) 1 NC_021155.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; hypothetical protein 96375 1171376004818 STU288_1p00680 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905870.1 95866 R 1171376 CDS YP_007905871.1 482907270 complement(96368..97483) 1 NC_021155.1 alpha-helical coiled-coil protein 97483 1171376004819 STU288_1p00685 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 alpha-helical coiled-coil protein YP_007905871.1 96368 R 1171376 CDS YP_007905872.1 482907271 complement(98300..98440) 1 NC_021155.1 hypothetical protein 98440 1171376004820 STU288_1p00690 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905872.1 98300 R 1171376 CDS YP_007905873.1 482907272 98885..99625 1 NC_021155.1 COG0288 Carbonic anhydrase; carbonic anhydrase 99625 1171376004821 STU288_1p00695 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 carbonic anhydrase YP_007905873.1 98885 D 1171376 CDS YP_007905874.1 482907273 99984..100688 1 NC_021155.1 COG3316 Transposase and inactivated derivatives; TnpA IS26-2 100688 1171376004822 STU288_1p00700 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TnpA IS26-2 YP_007905874.1 99984 D 1171376 CDS YP_007905875.1 482907274 100750..100989 1 NC_021155.1 COG0477 Permeases of the major facilitator superfamily; macrolide-efflux determinant 100989 1171376004823 STU288_1p00705 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 macrolide-efflux determinant YP_007905875.1 100750 D 1171376 CDS YP_007905876.1 482907275 101135..101998 1 NC_021155.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 101998 1171376004824 STU288_1p00710 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 short chain dehydrogenase YP_007905876.1 101135 D 1171376 CDS YP_007905877.1 482907276 102036..102281 1 NC_021155.1 COG2320 Uncharacterized conserved protein; hypothetical protein 102281 1171376004825 STU288_1p00715 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905877.1 102036 D 1171376 CDS YP_007905878.1 482907277 102750..103541 1 NC_021155.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 103541 1171376004826 STU288_1p00720 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropteroate synthase YP_007905878.1 102750 D 1171376 CDS YP_007905879.1 482907278 complement(103731..104138) 1 NC_021155.1 hypothetical protein 104138 1171376004827 STU288_1p00725 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905879.1 103731 R 1171376 CDS YP_007905880.1 482907279 104160..104474 1 NC_021155.1 COG3328 Transposase and inactivated derivatives; putative transposase 104474 1171376004828 STU288_1p00730 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase YP_007905880.1 104160 D 1171376 CDS YP_007905881.1 482907280 complement(104721..105053) 1 NC_021155.1 COG2076 Membrane transporters of cations and cationic drugs; QacEdelta1 protein 105053 1171376004829 STU288_1p00735 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 QacEdelta1 protein YP_007905881.1 104721 R 1171376 CDS YP_007905882.1 482907281 complement(105223..106014) 1 NC_021155.1 COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 106014 1171376004830 STU288_1p00740 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoglycoside resistance protein YP_007905882.1 105223 R 1171376 CDS YP_007905883.1 482907282 complement(106107..107366) 1 NC_021155.1 COG0477 Permeases of the major facilitator superfamily; chloramphenicol efflux protein CmlA 107366 1171376004831 STU288_1p00745 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 chloramphenicol efflux protein CmlA YP_007905883.1 106107 R 1171376 CDS YP_007905884.1 482907283 complement(107628..108419) 1 NC_021155.1 COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 108419 1171376004832 STU288_1p00750 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 aminoglycoside resistance protein YP_007905884.1 107628 R 1171376 CDS YP_007905885.1 482907284 complement(108827..109324) 1 NC_021155.1 COG0262 Dihydrofolate reductase; dihydrofolate reductase 109324 1171376004833 STU288_1p00755 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydrofolate reductase YP_007905885.1 108827 R 1171376 CDS YP_007905886.1 482907285 109469..110482 1 NC_021155.1 COG0582 Integrase; integrase/recombinase 110482 1171376004834 STU288_1p00760 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 integrase/recombinase YP_007905886.1 109469 D 1171376 CDS YP_007905887.1 482907286 complement(110441..110620) 1 NC_021155.1 putative transcriptional regulator 110620 1171376004835 STU288_1p00765 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transcriptional regulator YP_007905887.1 110441 R 1171376 CDS YP_007905888.1 482907287 110835..111035 1 NC_021155.1 modulator protein 111035 1171376004836 STU288_1p00770 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 modulator protein YP_007905888.1 110835 D 1171376 CDS YP_007905889.1 482907288 111161..111721 1 NC_021155.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; resolvase protein 111721 1171376004837 STU288_1p00775 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resolvase protein YP_007905889.1 111161 D 1171376 CDS YP_007905890.1 482907289 111724..114690 1 NC_021155.1 COG4644 Transposase and inactivated derivatives, TnpA family; protein TnpA 114690 1171376004838 STU288_1p00780 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 protein TnpA YP_007905890.1 111724 D 1171376 CDS YP_007905891.1 482907290 complement(114659..114901) 1 NC_021155.1 hypothetical protein 114901 1171376004839 STU288_1p00785 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905891.1 114659 R 1171376 CDS YP_007905892.1 482907291 115230..116333 1 NC_021155.1 COG4271 Predicted nucleotide-binding protein containing TIR -like domain; hypothetical protein 116333 1171376004840 STU288_1p00790 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905892.1 115230 D 1171376 CDS YP_007905893.1 482907292 116363..117493 1 NC_021155.1 hypothetical protein 117493 1171376004841 STU288_1p00795 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905893.1 116363 D 1171376 CDS YP_007905894.1 482907293 117493..117783 1 NC_021155.1 KorC1 117783 1171376004842 STU288_1p00800 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 KorC1 YP_007905894.1 117493 D 1171376 CDS YP_007905895.1 482907294 complement(117780..118082) 1 NC_021155.1 hypothetical protein 118082 1171376004843 STU288_1p00805 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905895.1 117780 R 1171376 CDS YP_007905896.1 482907295 118302..119435 1 NC_021155.1 hypothetical protein 119435 1171376004844 STU288_1p00810 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905896.1 118302 D 1171376 CDS YP_007905897.1 482907296 119455..119739 1 NC_021155.1 KorC 119739 1171376004845 STU288_1p00815 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 KorC YP_007905897.1 119455 D 1171376 CDS YP_007905898.1 482907297 complement(119910..120557) 1 NC_021155.1 hypothetical protein 120557 1171376004846 STU288_1p00820 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905898.1 119910 R 1171376 CDS YP_007905899.1 482907298 complement(120545..120880) 1 NC_021155.1 hypothetical protein 120880 1171376004847 STU288_1p00825 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905899.1 120545 R 1171376 CDS YP_007905900.1 482907299 complement(121060..121641) 1 NC_021155.1 hypothetical protein 121641 1171376004848 STU288_1p00830 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905900.1 121060 R 1171376 CDS YP_007905901.1 482907300 122355..122573 1 NC_021155.1 COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid; plasmid maintenance protein CcdA 122573 1171376004849 STU288_1p00835 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid maintenance protein CcdA YP_007905901.1 122355 D 1171376 CDS YP_007905902.1 482907301 122575..122880 1 NC_021155.1 plasmid maintenance protein CcdB 122880 1171376004850 STU288_1p00840 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid maintenance protein CcdB YP_007905902.1 122575 D 1171376 CDS YP_007905903.1 482907302 122882..123172 1 NC_021155.1 putative cytoplasmic protein 123172 1171376004851 STU288_1p00845 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905903.1 122882 D 1171376 CDS YP_007905904.1 482907303 123169..123690 1 NC_021155.1 putative cytoplasmic protein 123690 1171376004852 STU288_1p00850 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative cytoplasmic protein YP_007905904.1 123169 D 1171376 CDS YP_007905905.1 482907304 123725..124507 1 NC_021155.1 COG0582 Integrase; resolvase 124507 1171376004853 STU288_1p00855 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resolvase YP_007905905.1 123725 D 1171376 CDS YP_007905906.1 482907305 124516..125067 1 NC_021155.1 COG2200 FOG: EAL domain; putative diguanylate cyclase/phosphodiesterase 125067 1171376004854 STU288_1p00860 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative diguanylate cyclase/phosphodiesterase YP_007905906.1 124516 D 1171376 CDS YP_007905907.1 482907306 125233..125742 1 NC_021155.1 putative inner membrane protein 125742 1171376004855 STU288_1p00865 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905907.1 125233 D 1171376 CDS YP_007905908.1 482907307 125736..126221 1 NC_021155.1 putative inner membrane protein 126221 1171376004856 STU288_1p00870 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative inner membrane protein YP_007905908.1 125736 D 1171376 CDS YP_007905909.1 482907308 126474..127061 1 NC_021155.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 127061 1171376004857 STU288_1p00875 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905909.1 126474 D 1171376 CDS YP_007905910.1 482907309 127085..127501 1 NC_021155.1 putative adhesin 127501 1171376004858 STU288_1p00880 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative adhesin YP_007905910.1 127085 D 1171376 CDS YP_007905911.1 482907310 complement(127568..127918) 1 NC_021155.1 COG0675 Transposase and inactivated derivatives; putative transposase 127918 1171376004859 STU288_1p00885 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase YP_007905911.1 127568 R 1171376 CDS YP_007905912.1 482907311 128157..128399 1 NC_021155.1 COG1943 Transposase and inactivated derivatives; putative transposase, IS200-like protein 128399 1171376004860 STU288_1p00890 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase, IS200-like protein YP_007905912.1 128157 D 1171376 CDS YP_007905913.1 482907312 complement(128526..129176) 1 NC_021155.1 virulence protein SpvD 129176 1171376004861 STU288_1p00895 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 virulence protein SpvD YP_007905913.1 128526 R 1171376 CDS YP_007905914.1 482907313 complement(129437..130162) 1 NC_021155.1 type III effector phosphothreonine lyase 130162 1171376004862 STU288_1p00900 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 type III effector phosphothreonine lyase YP_007905914.1 129437 R 1171376 CDS YP_007905915.1 482907314 complement(130444..132219) 1 NC_021155.1 COG5585 NAD+--asparagine ADP-ribosyltransferase; virulence protein SpvB 132219 1171376004863 STU288_1p00905 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 virulence protein SpvB YP_007905915.1 130444 R 1171376 CDS YP_007905916.1 482907315 complement(132321..133025) 1 NC_021155.1 COG3316 Transposase and inactivated derivatives; TnpA IS26-2 133025 1171376004864 STU288_1p00910 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TnpA IS26-2 YP_007905916.1 132321 R 1171376 CDS YP_007905917.1 482907316 133084..133245 1 NC_021155.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; resolvase 133245 1171376004865 STU288_1p00915 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 resolvase YP_007905917.1 133084 D 1171376 CDS YP_007905918.1 482907317 133428..134288 1 NC_021155.1 COG2367 Beta-lactamase class A; beta-lactamase TEM 134288 1171376004866 STU288_1p00920 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 beta-lactamase TEM YP_007905918.1 133428 D 1171376 CDS YP_007905919.1 482907318 complement(134692..134856) 1 NC_021155.1 hypothetical protein 134856 1171376004867 STU288_1p00925 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905919.1 134692 R 1171376 CDS YP_007905920.1 482907319 135063..135314 1 NC_021155.1 hypothetical protein 135314 1171376004868 STU288_1p00930 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905920.1 135063 D 1171376 CDS YP_007905921.1 482907320 complement(135386..135538) 1 NC_021155.1 post-segregation killing protein 135538 1171376004869 STU288_1p00935 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 post-segregation killing protein YP_007905921.1 135386 R 1171376 CDS YP_007905922.1 482907321 135830..137038 1 NC_021155.1 IncI1 conjugal transfer protein TrbA 137038 1171376004870 STU288_1p00940 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IncI1 conjugal transfer protein TrbA YP_007905922.1 135830 D 1171376 CDS YP_007905923.1 482907322 137057..138127 1 NC_021155.1 COG1651 Protein-disulfide isomerase; TrbB 138127 1171376004871 STU288_1p00945 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TrbB YP_007905923.1 137057 D 1171376 CDS YP_007905924.1 482907323 138120..140411 1 NC_021155.1 conjugal transfer protein TrbC 140411 1171376004872 STU288_1p00950 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 conjugal transfer protein TrbC YP_007905924.1 138120 D 1171376 CDS YP_007905925.1 482907324 complement(140448..143147) 1 NC_021155.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase); TrbD 143147 1171376004873 STU288_1p00955 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 TrbD YP_007905925.1 140448 R 1171376 CDS YP_007905926.1 482907325 complement(143158..143490) 1 NC_021155.1 relaxosome component 143490 1171376004874 STU288_1p00960 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 relaxosome component YP_007905926.1 143158 R 1171376 CDS YP_007905927.1 482907326 143724..144059 1 NC_021155.1 hypothetical protein 144059 1171376004875 STU288_1p00965 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905927.1 143724 D 1171376 CDS YP_007905928.1 482907327 complement(144146..144994) 1 NC_021155.1 hypothetical protein 144994 1171376004876 STU288_1p00970 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905928.1 144146 R 1171376 CDS YP_007905929.1 482907328 145343..145540 1 NC_021155.1 hypothetical protein 145540 1171376004877 STU288_1p00975 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905929.1 145343 D 1171376 CDS YP_007905930.1 482907329 complement(145640..147211) 1 NC_021155.1 COG3436 Transposase and inactivated derivatives; issfl4 orf3 147211 1171376004878 STU288_1p00980 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 issfl4 orf3 YP_007905930.1 145640 R 1171376 CDS YP_007905931.1 482907330 complement(147231..147578) 1 NC_021155.1 COG3436 Transposase and inactivated derivatives; putative transposase subunit 147578 1171376004879 STU288_1p00985 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative transposase subunit YP_007905931.1 147231 R 1171376 CDS YP_007905932.1 482907331 complement(147578..148255) 1 NC_021155.1 COG4584 Transposase and inactivated derivatives; IS66 family transposase orfA 148255 1171376004880 STU288_1p00990 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 IS66 family transposase orfA YP_007905932.1 147578 R 1171376 CDS YP_007905933.1 482907332 148296..148532 1 NC_021155.1 YgeA 148532 1171376004881 STU288_1p00995 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YgeA YP_007905933.1 148296 D 1171376 CDS YP_007905934.1 482907333 complement(148563..>148711) 3 NC_021155.1 YdgA >148711 1171376004882 STU288_1p01000 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 YdgA YP_007905934.1 148563 R 1171376 CDS YP_007905935.1 482907336 complement(513..797) 1 NC_021156.1 mobilization protein C, MobC 797 1171376004883 STU288_2p00005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mobilization protein C, MobC YP_007905935.1 513 R 1171376 CDS YP_007905936.1 482907337 996..3125 1 NC_021156.1 mobilization protein A, MobA 3125 1171376004884 STU288_2p00010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mobilization protein A, MobA YP_007905936.1 996 D 1171376 CDS YP_007905937.1 482907338 3186..3398 1 NC_021156.1 unknown protein E 3398 1171376004885 STU288_2p00015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 unknown protein E YP_007905937.1 3186 D 1171376 CDS YP_007905938.1 482907339 3400..3606 1 NC_021156.1 repressor protein F 3606 1171376004886 STU288_2p00020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 repressor protein F YP_007905938.1 3400 D 1171376 CDS YP_007905939.1 482907340 3636..4475 1 NC_021156.1 COG3598 RecA-family ATPase; replication protein A, RepA 4475 1171376004887 STU288_2p00025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein A, RepA YP_007905939.1 3636 D 1171376 CDS YP_007905940.1 482907341 4462..5313 1 NC_021156.1 replication protein C 5313 1171376004888 STU288_2p00030 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 replication protein C YP_007905940.1 4462 D 1171376 CDS YP_007905941.1 482907342 5621..6436 1 NC_021156.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 6436 1171376004889 STU288_2p00035 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 dihydropteroate synthase YP_007905941.1 5621 D 1171376 CDS YP_007905942.1 482907343 6497..7300 1 NC_021156.1 COG3231 Aminoglycoside phosphotransferase; StrA 7300 1171376004890 STU288_2p00040 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 StrA YP_007905942.1 6497 D 1171376 CDS YP_007905943.1 482907344 7300..8136 1 NC_021156.1 COG3570 Streptomycin 6-kinase; streptomycin 3''-kinase 8136 1171376004891 STU288_2p00045 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 streptomycin 3''-kinase YP_007905943.1 7300 D 1171376 CDS YP_007905944.1 482907345 8523..8795 1 NC_021156.1 hypothetical protein 8795 1171376004892 STU288_2p00050 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905944.1 8523 D 1171376 CDS YP_007905945.1 482907346 9476..10750 1 NC_021156.1 COG0477 Permeases of the major facilitator superfamily; tetracycline efflux protein 10750 1171376004893 STU288_2p00065 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 tetracycline efflux protein YP_007905945.1 9476 D 1171376 CDS YP_007905946.1 482907347 complement(10681..>11067) 1 NC_021156.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase >11067 1171376004894 STU288_2p00070 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 putative acetyltransferase YP_007905946.1 10681 R 1171376 CDS YP_007905947.1 482907349 991..1314 1 NC_021157.1 mobilization protein MobC 1314 1171376004895 STU288_3p00005 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 mobilization protein MobC YP_007905947.1 991 D 1171376 CDS YP_007905948.1 482907350 1304..2803 1 NC_021157.1 MobA-like protein 2803 1171376004896 STU288_3p00010 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MobA-like protein YP_007905948.1 1304 D 1171376 CDS YP_007905949.1 482907351 1992..2477 1 NC_021157.1 MobB-like protein 2477 1171376004897 STU288_3p00015 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MobB-like protein YP_007905949.1 1992 D 1171376 CDS YP_007905950.1 482907352 2481..2696 1 NC_021157.1 MobD-like protein 2696 1171376004898 STU288_3p00020 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 MobD-like protein YP_007905950.1 2481 D 1171376 CDS YP_007905951.1 482907353 3027..4535 1 NC_021157.1 COG2199 FOG: GGDEF domain; hypothetical protein 4535 1171376004899 STU288_3p00025 Salmonella enterica subsp. enterica serovar Typhimurium str. U288 hypothetical protein YP_007905951.1 3027 D 1171376 CDS