-- dump date 20140620_055510 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 718274000001 SEQ_END SEQ_END NC_016860.1 4954814 4954814 DR NC_016860.1; contig end 4954814..4954814 Salmonella enterica subsp. enterica serovar Typhimurium str. 718274000002 SEQ_END SEQ_END NC_016861.1 106510 106510 DR NC_016861.1; contig end 106510..106510 Salmonella enterica subsp. enterica serovar Typhimurium str. 718274000003 SEQ_END SEQ_END NC_016862.1 8670 8670 DR NC_016862.1; contig end 8670..8670 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245698.1 CDS thrA NC_016860.1 337 2799 D COG0527 Aspartokinases; bifunctional aspartate kinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245699.1 CDS STMDT12_C00020 NC_016860.1 2801 3730 D COG0083 Homoserine kinase; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245700.1 CDS STMDT12_C00030 NC_016860.1 3734 5020 D COG0498 Threonine synthase; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245701.1 CDS STMDT12_C00040 NC_016860.1 5114 5887 R COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245702.1 CDS STMDT12_C00050 NC_016860.1 5966 7396 R COG1115 Na+/alanine symporter; putative alanine/glycine transport protein complement(5966..7396) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245703.1 CDS STMDT12_C00060 NC_016860.1 7665 8618 D COG0176 Transaldolase; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245704.1 CDS mogA NC_016860.1 8729 9319 D COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 8729..9319 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245705.1 CDS STMDT12_C00080 NC_016860.1 9376 9942 R COG1584 Predicted membrane protein; hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245706.1 CDS STMDT12_C00090 NC_016860.1 10092 10805 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245707.1 CDS STMDT12_C00100 NC_016860.1 10841 11245 R hypothetical protein complement(10841..11245) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245708.1 CDS dnaK NC_016860.1 11593 13509 D COG0443 Molecular chaperone; molecular chaperone DnaK 11593..13509 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245709.1 CDS STMDT12_C00130 NC_016860.1 13595 14734 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 13595..14734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245710.1 CDS STMDT12_C00140 NC_016860.1 15014 15961 D COG0583 Transcriptional regulator; putative transcriptional regulator 15014..15961 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245711.1 CDS STMDT12_C00150 NC_016860.1 16088 16432 D hypothetical protein 16088..16432 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245712.1 CDS STMDT12_C00160 NC_016860.1 16493 17026 R COG3926 Putative secretion activating protein; hypothetical protein complement(16493..17026) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245713.1 CDS STMDT12_C00170 NC_016860.1 17043 17486 R COG3710 DNA-binding winged-HTH domains; hypothetical protein complement(17043..17486) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245714.1 CDS STMDT12_C00180 NC_016860.1 17867 19966 D COG3325 Chitinase; exochitinase 17867..19966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245715.1 CDS STMDT12_C00190 NC_016860.1 20058 23054 D putative hydroxymethyltransferase 20058..23054 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245716.1 CDS STMDT12_C00200 NC_016860.1 23335 24039 D hypothetical protein 23335..24039 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245717.1 CDS STMDT12_C00210 NC_016860.1 24469 25011 D COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit 24469..25011 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245718.1 CDS STMDT12_C00220 NC_016860.1 25112 25798 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaparone 25112..25798 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245719.1 CDS STMDT12_C00230 NC_016860.1 25758 28424 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD 25758..28424 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245720.1 CDS STMDT12_C00240 NC_016860.1 28425 29432 D COG3539 P pilus assembly protein, pilin FimA; hypothetical protein 28425..29432 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245721.1 CDS STMDT12_C00250 NC_016860.1 29433 29978 D fimbrial subunit 29433..29978 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245722.1 CDS STMDT12_C00260 NC_016860.1 29994 30512 D COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit 29994..30512 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245723.1 CDS STMDT12_C00270 NC_016860.1 30574 31209 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaparone 30574..31209 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245724.1 CDS STMDT12_C00280 NC_016860.1 31274 32119 D COG1651 Protein-disulfide isomerase; hypothetical protein 31274..32119 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245725.1 CDS STMDT12_C00290 NC_016860.1 32158 32445 D hypothetical protein 32158..32445 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245726.1 CDS STMDT12_C00300 NC_016860.1 32545 32994 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; putative transcriptional regulator complement(32545..32994) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245727.1 CDS STMDT12_C00310 NC_016860.1 33364 34368 D COG0583 Transcriptional regulator; putative transcriptional regulator 33364..34368 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245728.1 CDS STMDT12_C00320 NC_016860.1 34376 34816 R COG3710 DNA-binding winged-HTH domains; putative transcriptional regulator complement(34376..34816) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245729.1 CDS STMDT12_C00330 NC_016860.1 35339 37057 D arylsulfotransferase 35339..37057 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245730.1 CDS STMDT12_C00340 NC_016860.1 37103 38674 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; putative secreted 5'-nucleotidase complement(37103..38674) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245731.1 CDS STMDT12_C00350 NC_016860.1 38773 39534 R putative outer membrane protein complement(38773..39534) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245732.1 CDS STMDT12_C00360 NC_016860.1 40131 41624 D COG3119 Arylsulfatase A and related enzymes; putative secreted sulfatase 40131..41624 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245733.1 CDS STMDT12_C00370 NC_016860.1 41726 42913 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative sulfatase regulator protein 41726..42913 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245734.1 CDS STMDT12_C00380 NC_016860.1 42938 44185 D putative cytoplasmic protein 42938..44185 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245735.1 CDS STMDT12_C00390 NC_016860.1 44312 46027 D putative arylsulfatase 44312..46027 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245736.1 CDS nhaA NC_016860.1 46190 47356 D COG3004 Na+/H+ antiporter; pH-dependent sodium/proton antiporter 46190..47356 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245737.1 CDS nhaR NC_016860.1 47424 48317 D COG0583 Transcriptional regulator; transcriptional activator NhaR 47424..48317 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245738.1 CDS STMDT12_C00420 NC_016860.1 48372 50411 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; putative glycosyl hydrolase complement(48372..50411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245739.1 CDS STMDT12_C00430 NC_016860.1 50451 51824 R COG2211 Na+/melibiose symporter and related transporters; putative sodium galactoside symporter complement(50451..51824) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245740.1 CDS rpsT NC_016860.1 52280 52465 R COG0268 Ribosomal protein S20; 30S ribosomal protein S20 complement(52280..52465) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245741.1 CDS STMDT12_C00450 NC_016860.1 52649 52864 D hypothetical protein 52649..52864 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245742.1 CDS STMDT12_C00460 NC_016860.1 52872 53810 D COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 52872..53810 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245743.1 CDS ileS NC_016860.1 53819 56689 D COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 53819..56689 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245744.1 CDS lspA NC_016860.1 56689 57189 D COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 56689..57189 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245745.1 CDS STMDT12_C00490 NC_016860.1 57344 57793 D COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 57344..57793 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245746.1 CDS ispH NC_016860.1 57796 58746 D COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57796..58746 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245747.1 CDS STMDT12_C00510 NC_016860.1 58946 60148 D putative nitrite reductase 58946..60148 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245748.1 CDS STMDT12_C00520 NC_016860.1 60164 61084 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase RihC 60164..61084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245749.1 CDS STMDT12_C00530 NC_016860.1 61106 61792 R COG4565 Response regulator of citrate/malate metabolism; transcriptional regulator CitB complement(61106..61792) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245750.1 CDS STMDT12_C00540 NC_016860.1 61794 63452 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor kinase DpiB complement(61794..63452) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245751.1 CDS STMDT12_C00550 NC_016860.1 63548 64849 R COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase subunit beta complement(63548..64849) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245752.1 CDS STMDT12_C00560 NC_016860.1 64862 66637 R COG5016 Pyruvate/oxaloacetate carboxyltransferase; oxaloacetate decarboxylase complement(64862..66637) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245753.1 CDS STMDT12_C00570 NC_016860.1 66654 66893 R COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma complement(66654..66893) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245754.1 CDS STMDT12_C00580 NC_016860.1 67052 68392 R COG3493 Na+/citrate symporter; citrate-sodium symporter complement(67052..68392) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245755.1 CDS STMDT12_C00590 NC_016860.1 68649 69680 D COG3053 Citrate lyase synthetase; putative citrate lyase synthetase 68649..69680 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245756.1 CDS STMDT12_C00600 NC_016860.1 69710 70003 D COG3052 Citrate lyase, gamma subunit; citrate lyase gamma chain 69710..70003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245757.1 CDS STMDT12_C00610 NC_016860.1 70000 70869 D COG2301 Citrate lyase beta subunit; citrate lyase subunit beta 70000..70869 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245758.1 CDS STMDT12_C00620 NC_016860.1 70880 72400 D COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 70880..72400 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245759.1 CDS STMDT12_C00630 NC_016860.1 72400 72951 D COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); putative cytoplasmic protein 72400..72951 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245760.1 CDS STMDT12_C00640 NC_016860.1 72929 73837 D COG1767 Triphosphoribosyl-dephospho-CoA synthetase; CitG protein 72929..73837 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245761.1 CDS STMDT12_C00650 NC_016860.1 74017 74838 D COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 74017..74838 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245762.1 CDS STMDT12_C00660 NC_016860.1 74964 75239 R hypothetical protein complement(74964..75239) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245763.1 CDS STMDT12_C00670 NC_016860.1 75880 77028 D COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 75880..77028 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245764.1 CDS carB NC_016860.1 77047 80274 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 77047..80274 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245765.1 CDS STMDT12_C00690 NC_016860.1 80548 80943 D DNA-binding transcriptional activator CaiF 80548..80943 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245766.1 CDS STMDT12_C00700 NC_016860.1 81020 81616 R COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carnitine operon protein CaiE complement(81020..81616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245767.1 CDS STMDT12_C00710 NC_016860.1 81725 82510 R COG1024 Enoyl-CoA hydratase/carnithine racemase; carnitinyl-CoA dehydratase complement(81725..82510) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245768.1 CDS caiC NC_016860.1 82564 84117 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; putative crotonobetaine/carnitine-CoA ligase complement(82564..84117) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245769.1 CDS STMDT12_C00730 NC_016860.1 84180 85397 R COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; crotonobetainyl-CoA:carnitine CoA-transferase complement(84180..85397) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245770.1 CDS STMDT12_C00740 NC_016860.1 85509 86651 R COG1960 Acyl-CoA dehydrogenases; crotonobetainyl-CoA dehydrogenase complement(85509..86651) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245771.1 CDS STMDT12_C00750 NC_016860.1 86686 88203 R COG1292 Choline-glycine betaine transporter; L-carnitine/gamma-butyrobetaine antiporter complement(86686..88203) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245772.1 CDS STMDT12_C00760 NC_016860.1 88431 88616 D hypothetical protein 88431..88616 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245773.1 CDS STMDT12_C00770 NC_016860.1 88684 89454 D COG2086 Electron transfer flavoprotein, beta subunit; putative electron transfer flavoprotein FixA 88684..89454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245774.1 CDS fixB NC_016860.1 89470 90411 D COG2025 Electron transfer flavoprotein, alpha subunit; putative electron transfer flavoprotein FixB 89470..90411 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245775.1 CDS STMDT12_C00790 NC_016860.1 90461 91747 D COG0644 Dehydrogenases (flavoproteins); putative oxidoreductase FixC 90461..91747 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245776.1 CDS STMDT12_C00800 NC_016860.1 91744 92031 D COG2440 Ferredoxin-like protein; putative ferredoxin 91744..92031 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245777.1 CDS STMDT12_C00810 NC_016860.1 92112 93518 D COG0477 Permeases of the major facilitator superfamily; putative metabolite transport protein 92112..93518 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245778.1 CDS STMDT12_C00820 NC_016860.1 93607 93837 D putative outer membrane lipoprotein 93607..93837 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245779.1 CDS STMDT12_C00830 NC_016860.1 94131 94547 D hypothetical protein 94131..94547 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245780.1 CDS STMDT12_C00840 NC_016860.1 94771 95061 R hypothetical protein complement(94771..95061) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245781.1 CDS STMDT12_C00850 NC_016860.1 95959 97848 D COG3119 Arylsulfatase A and related enzymes; putative sulfatase 95959..97848 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245782.1 CDS STMDT12_C00860 NC_016860.1 98255 98785 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefF 98255..98785 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245783.1 CDS STMDT12_C00870 NC_016860.1 98778 100640 D COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefC 98778..100640 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245784.1 CDS folA NC_016860.1 100839 101318 D COG0262 Dihydrofolate reductase; dihydrofolate reductase 100839..101318 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245785.1 CDS apaH NC_016860.1 101424 102272 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; diadenosine tetraphosphatase complement(101424..102272) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245786.1 CDS apaG NC_016860.1 102283 102660 R COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; ApaG protein complement(102283..102660) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245787.1 CDS ksgA NC_016860.1 102663 103484 R COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase complement(102663..103484) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245788.1 CDS pdxA1 NC_016860.1 103481 104470 R COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase complement(103481..104470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245789.1 CDS STMDT12_C00930 NC_016860.1 104470 105756 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase SurA complement(104470..105756) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245790.1 CDS STMDT12_C00940 NC_016860.1 105810 108170 R COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein complement(105810..108170) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245791.1 CDS djlA NC_016860.1 108424 109236 D COG1076 DnaJ-domain-containing proteins 1; Dna-J like membrane chaperone protein 108424..109236 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245792.1 CDS STMDT12_C00960 NC_016860.1 109331 109990 R COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA/tRNA pseudouridine synthase A complement(109331..109990) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245793.1 CDS STMDT12_C00970 NC_016860.1 110002 112908 R COG0553 Superfamily II DNA/RNA helicases, SNF2 family; RNA polymerase associated protein RapA complement(110002..112908) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245794.1 CDS STMDT12_C00980 NC_016860.1 113082 115433 R COG0417 DNA polymerase elongation subunit (family B); DNA polymerase II complement(113082..115433) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245795.1 CDS STMDT12_C00990 NC_016860.1 115477 116097 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(115477..116097) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245796.1 CDS STMDT12_C01000 NC_016860.1 116816 117235 D putative cytoplasmic protein 116816..117235 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245797.1 CDS araD NC_016860.1 117241 117936 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase complement(117241..117936) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245798.1 CDS STMDT12_C01020 NC_016860.1 118077 119579 R COG2160 L-arabinose isomerase; L-arabinose isomerase complement(118077..119579) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245799.1 CDS STMDT12_C01030 NC_016860.1 119590 121299 R COG1069 Ribulose kinase; ribulokinase complement(119590..121299) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245800.1 CDS STMDT12_C01040 NC_016860.1 121640 122485 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator AraC 121640..122485 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245801.1 CDS STMDT12_C01050 NC_016860.1 122604 123371 D COG0586 Uncharacterized membrane-associated protein; inner membrane protein YabI 122604..123371 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245802.1 CDS thiQ NC_016860.1 123410 124117 R COG3840 ABC-type thiamine transport system, ATPase component; thiamine ABC transporter ATP-binding protein complement(123410..124117) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245803.1 CDS thiP NC_016860.1 124101 125711 R COG1178 ABC-type Fe3+ transport system, permease component; thiamine ABC transporter permease protein complement(124101..125711) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245804.1 CDS tbpA NC_016860.1 125687 126670 R COG4143 ABC-type thiamine transport system, periplasmic component; thiamine ABC transporter substrate binding protein complement(125687..126670) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245805.1 CDS STMDT12_C01090 NC_016860.1 126848 128506 R COG4533 ABC-type uncharacterized transport system, periplasmic component; transcriptional regulator SgrR complement(126848..128506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245806.1 CDS STMDT12_C01100 NC_016860.1 128599 128721 D hypothetical protein 128599..128721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245807.1 CDS leuD NC_016860.1 129057 129662 R COG0066 3-isopropylmalate dehydratase small subunit; isopropylmalate isomerase small subunit complement(129057..129662) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245808.1 CDS STMDT12_C01120 NC_016860.1 129673 131073 R COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit complement(129673..131073) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245809.1 CDS STMDT12_C01130 NC_016860.1 131076 132167 R COG0473 Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(131076..132167) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245810.1 CDS STMDT12_C01140 NC_016860.1 132167 133738 R COG0119 Isopropylmalate/homocitrate/citramalate synthases; 2-isopropylmalate synthase complement(132167..133738) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245811.1 CDS leuO NC_016860.1 134569 135513 D COG0583 Transcriptional regulator; HTH-type transcriptional regulator LeuO 134569..135513 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245812.1 CDS STMDT12_C01160 NC_016860.1 135898 137559 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 3 catalytic subunit 135898..137559 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245813.1 CDS ilvH NC_016860.1 137559 138053 D COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 3 regulatory subunit 137559..138053 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245814.1 CDS STMDT12_C01180 NC_016860.1 138337 139341 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator FruR 138337..139341 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245815.1 CDS STMDT12_C01190 NC_016860.1 139947 140405 D COG2001 Uncharacterized protein conserved in bacteria; cell division protein MraZ 139947..140405 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245816.1 CDS mraW NC_016860.1 140407 141348 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 140407..141348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245817.1 CDS STMDT12_C01210 NC_016860.1 141345 141710 D COG3116 Cell division protein; cell division protein FtsL 141345..141710 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245818.1 CDS STMDT12_C01220 NC_016860.1 141726 143492 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan synthetase FtsI 141726..143492 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245819.1 CDS murE NC_016860.1 143479 144966 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143479..144966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245820.1 CDS murF NC_016860.1 144963 146321 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 144963..146321 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245821.1 CDS mraY NC_016860.1 146315 147397 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide transferase 146315..147397 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245822.1 CDS murD NC_016860.1 147400 148716 D COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 147400..148716 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245823.1 CDS STMDT12_C01270 NC_016860.1 148716 149960 D COG0772 Bacterial cell division membrane protein; cell division protein FtsW 148716..149960 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245824.1 CDS murG NC_016860.1 149957 151024 D COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 149957..151024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245825.1 CDS murC NC_016860.1 151143 152618 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 151143..152618 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245826.1 CDS ddlB NC_016860.1 152611 153531 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase 152611..153531 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245827.1 CDS STMDT12_C01310 NC_016860.1 153533 154363 D COG1589 Cell division septal protein; cell division protein FtsQ 153533..154363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245828.1 CDS ftsA NC_016860.1 154360 155622 D COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 154360..155622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245829.1 CDS STMDT12_C01330 NC_016860.1 155683 156834 D COG0206 Cell division GTPase; cell division protein FtsZ 155683..156834 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245830.1 CDS lpxC NC_016860.1 156935 157852 D COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 156935..157852 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245831.1 CDS STMDT12_C01350 NC_016860.1 158130 158627 D SecA regulator SecM 158130..158627 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245832.1 CDS STMDT12_C01360 NC_016860.1 158689 161394 D COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 158689..161394 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245833.1 CDS STMDT12_C01370 NC_016860.1 161546 161941 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphate pyrophosphohydrolase 161546..161941 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245834.1 CDS STMDT12_C01380 NC_016860.1 161975 162109 R COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo/keto reductase complement(161975..162109) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245835.1 CDS STMDT12_C01390 NC_016860.1 162263 162454 R COG3024 Uncharacterized protein conserved in bacteria; zinc-binding protein complement(162263..162454) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245836.1 CDS STMDT12_C01400 NC_016860.1 162464 163207 R COG4582 Uncharacterized protein conserved in bacteria; hypothetical protein complement(162464..163207) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245837.1 CDS coaE NC_016860.1 163207 163827 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(163207..163827) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245838.1 CDS STMDT12_C01420 NC_016860.1 164053 165096 D COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 164053..165096 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245839.1 CDS STMDT12_C01430 NC_016860.1 165127 166329 R COG1459 Type II secretory pathway, component PulF; type IV pilin biogenesis protein complement(165127..166329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245840.1 CDS STMDT12_C01440 NC_016860.1 166319 167704 R COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; hypothetical protein complement(166319..167704) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245841.1 CDS STMDT12_C01450 NC_016860.1 167714 168151 R COG4969 Tfp pilus assembly protein, major pilin PilA; putative major pilin subunit complement(167714..168151) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245842.1 CDS STMDT12_C01460 NC_016860.1 168373 169266 R COG0157 Nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase complement(168373..169266) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245843.1 CDS STMDT12_C01470 NC_016860.1 169354 169917 D COG3023 Negative regulator of beta-lactamase expression; N-acetyl-anhydromuranmyl-L-alanine amidase 169354..169917 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245844.1 CDS STMDT12_C01480 NC_016860.1 169914 170768 D COG3725 Membrane protein required for beta-lactamase induction; regulatory protein AmpE 169914..170768 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245845.1 CDS STMDT12_C01490 NC_016860.1 170860 171810 R COG3940 Predicted beta-xylosidase; putative cytoplasmic protein complement(170860..171810) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245846.1 CDS STMDT12_C01500 NC_016860.1 171810 173216 R COG2211 Na+/melibiose symporter and related transporters; hypothetical protein complement(171810..173216) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245847.1 CDS STMDT12_C01510 NC_016860.1 173380 174750 R COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transporter complement(173380..174750) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245848.1 CDS pdhR NC_016860.1 175316 176080 D COG2186 Transcriptional regulators; transcriptional regulator PdhR 175316..176080 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245849.1 CDS aceE NC_016860.1 176240 178903 D COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; pyruvate dehydrogenase subunit E1 176240..178903 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245850.1 CDS aceF NC_016860.1 178918 180807 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide acetyltransferase 178918..180807 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245851.1 CDS STMDT12_C01550 NC_016860.1 181007 182431 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; dihydrolipoamide dehydrogenase 181007..182431 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245852.1 CDS STMDT12_C01560 NC_016860.1 182720 183004 D hypothetical protein 182720..183004 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245853.1 CDS STMDT12_C01570 NC_016860.1 183042 183833 R hypothetical protein complement(183042..183833) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245854.1 CDS STMDT12_C01580 NC_016860.1 183846 185468 R hypothetical protein complement(183846..185468) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245855.1 CDS STMDT12_C01590 NC_016860.1 185857 188454 D COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185857..188454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245856.1 CDS STMDT12_C01600 NC_016860.1 188515 189357 R COG3183 Predicted restriction endonuclease; putative restriction endonuclease complement(188515..189357) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245857.1 CDS STMDT12_C01610 NC_016860.1 189603 189965 D COG3112 Uncharacterized protein conserved in bacteria; hypothetical protein 189603..189965 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245858.1 CDS STMDT12_C01620 NC_016860.1 190200 191153 D 2-keto-3-deoxygluconate permease 190200..191153 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245859.1 CDS STMDT12_C01630 NC_016860.1 191150 192421 D COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 191150..192421 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245860.1 CDS pdxA2 NC_016860.1 192411 193394 D COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 192411..193394 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245861.1 CDS STMDT12_C01650 NC_016860.1 193404 194171 D COG1349 Transcriptional regulators of sugar metabolism; DeoR-family transcriptional regulator 193404..194171 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245862.1 CDS STMDT12_C01660 NC_016860.1 194201 194995 R COG1586 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase complement(194201..194995) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245863.1 CDS STMDT12_C01670 NC_016860.1 195016 195876 R COG0421 Spermidine synthase; spermidine synthase complement(195016..195876) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245864.1 CDS STMDT12_C01680 NC_016860.1 195983 196330 R hypothetical protein complement(195983..196330) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245865.1 CDS STMDT12_C01690 NC_016860.1 196532 198142 D COG2132 Putative multicopper oxidases; multicopper oxidase 196532..198142 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245866.1 CDS STMDT12_C01700 NC_016860.1 198220 200610 R COG4993 Glucose dehydrogenase; glucose dehydrogenase complement(198220..200610) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245867.1 CDS STMDT12_C01710 NC_016860.1 200816 201352 D COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 200816..201352 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245868.1 CDS STMDT12_C01720 NC_016860.1 201410 202072 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(201410..202072) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245869.1 CDS STMDT12_C01730 NC_016860.1 202181 203107 D COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 202181..203107 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245870.1 CDS STMDT12_C01740 NC_016860.1 203104 203874 D COG0842 ABC-type multidrug transport system, permease component; ABC transporter permease 203104..203874 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245871.1 CDS STMDT12_C01750 NC_016860.1 203991 205070 R putative fimbrial protein precurosr complement(203991..205070) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245872.1 CDS STMDT12_C01760 NC_016860.1 205079 207625 R COG3188 P pilus assembly protein, porin PapC; putativie fimbrial usher protein complement(205079..207625) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245873.1 CDS STMDT12_C01770 NC_016860.1 207652 208335 R COG3121 P pilus assembly protein, chaperone PapD; chaperone protein FimC complement(207652..208335) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245874.1 CDS STMDT12_C01780 NC_016860.1 208383 208922 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial protein complement(208383..208922) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245875.1 CDS STMDT12_C01790 NC_016860.1 209293 209733 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS system IIA protein 209293..209733 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245876.1 CDS STMDT12_C01800 NC_016860.1 209801 211024 D COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 209801..211024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245877.1 CDS STMDT12_C01810 NC_016860.1 211031 211411 R COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase complement(211031..211411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245878.1 CDS panC NC_016860.1 211506 212360 R COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase complement(211506..212360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245879.1 CDS panB NC_016860.1 212486 213277 R COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(212486..213277) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245880.1 CDS STMDT12_C01840 NC_016860.1 213398 213877 R COG0801 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(213398..213877) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245881.1 CDS pcnB NC_016860.1 213874 215187 R COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase I complement(213874..215187) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245882.1 CDS STMDT12_C01860 NC_016860.1 215433 216329 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA(Asp) synthetase complement(215433..216329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245883.1 CDS dksA NC_016860.1 216398 216853 R COG1734 DnaK suppressor protein; RNA polymerase-binding transcription factor complement(216398..216853) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245884.1 CDS STMDT12_C01880 NC_016860.1 217030 217734 R COG1489 DNA-binding protein, stimulates sugar fermentation; sugar fermentation stimulation protein A complement(217030..217734) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245885.1 CDS STMDT12_C01890 NC_016860.1 217751 218281 R COG1514 2'-5' RNA ligase; 2'-5' RNA ligase complement(217751..218281) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245886.1 CDS STMDT12_C01900 NC_016860.1 218309 220783 D COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpB 218309..220783 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245887.1 CDS mrcB NC_016860.1 220924 223446 D COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1b 220924..223446 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245888.1 CDS STMDT12_C01920 NC_016860.1 223739 225928 D COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrichrome outer membrane transporter 223739..225928 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245889.1 CDS STMDT12_C01930 NC_016860.1 225977 226774 D COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-hydroxamate ABC transporter ATP-binding protein 225977..226774 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245890.1 CDS STMDT12_C01940 NC_016860.1 226774 227664 D COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron-hydroxamate ABC transporter substrate binding protein 226774..227664 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245891.1 CDS STMDT12_C01950 NC_016860.1 227679 229718 D COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-hydroxamate ABC transporter permease protein 227679..229718 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245892.1 CDS STMDT12_C01960 NC_016860.1 230658 231218 D COG3539 P pilus assembly protein, pilin FimA; putative fimbrial protein 230658..231218 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245893.1 CDS STMDT12_C01970 NC_016860.1 231304 233961 D COG3188 P pilus assembly protein, porin PapC; putative fimbrial outer membrane usher protein 231304..233961 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245894.1 CDS STMDT12_C01980 NC_016860.1 233979 234731 D COG3121 P pilus assembly protein, chaperone PapD; putative periplasmic fimbrial chaperone 233979..234731 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245895.1 CDS STMDT12_C01990 NC_016860.1 234750 235262 D putative minor fimbrial subunit 234750..235262 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245896.1 CDS STMDT12_C02000 NC_016860.1 235259 235735 D fimbrial subunit 235259..235735 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245897.1 CDS STMDT12_C02010 NC_016860.1 235735 236265 D putative minor fimbrial subunit 235735..236265 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245898.1 CDS STMDT12_C02020 NC_016860.1 236265 237104 D putative outer membrane protein 236265..237104 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245899.1 CDS STMDT12_C02030 NC_016860.1 237212 238492 R COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase complement(237212..238492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245900.1 CDS STMDT12_C02040 NC_016860.1 238662 240083 D COG0038 Chloride channel protein EriC; chloride channel protein 238662..240083 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245901.1 CDS STMDT12_C02050 NC_016860.1 240165 240509 D COG0316 Uncharacterized conserved protein; iron-sulfur cluster insertion protein ErpA 240165..240509 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245902.1 CDS STMDT12_C02060 NC_016860.1 240610 241233 R COG2860 Predicted membrane protein; hypothetical protein complement(240610..241233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245903.1 CDS STMDT12_C02070 NC_016860.1 241270 242070 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; vtamin B12 ABC transporter periplasmic binding protein BtuF complement(241270..242070) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245904.1 CDS STMDT12_C02080 NC_016860.1 242063 242761 R COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(242063..242761) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245905.1 CDS dgt NC_016860.1 242846 244363 D COG0232 dGTP triphosphohydrolase; deoxyguanosinetriphosphate triphosphohydrolase 242846..244363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245906.1 CDS STMDT12_C02100 NC_016860.1 244493 245920 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 244493..245920 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245907.1 CDS STMDT12_C02110 NC_016860.1 246073 247230 D COG3835 Sugar diacid utilization regulator; carbohydrate diacid transcriptional activator CdaR 246073..247230 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245908.1 CDS STMDT12_C02120 NC_016860.1 247319 247705 R hypothetical protein complement(247319..247705) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245909.1 CDS STMDT12_C02130 NC_016860.1 247952 249253 D COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein 247952..249253 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245910.1 CDS dapD NC_016860.1 249290 250114 R COG2171 Tetrahydrodipicolinate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(249290..250114) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245911.1 CDS STMDT12_C02150 NC_016860.1 250144 252816 R COG2844 UTP:GlnB (protein PII) uridylyltransferase; protein PII uridylyl-transferase complement(250144..252816) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245912.1 CDS STMDT12_C02160 NC_016860.1 253053 253847 R COG0024 Methionine aminopeptidase; methionine aminopeptidase complement(253053..253847) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245913.1 CDS rpsB NC_016860.1 254298 255023 D COG0052 Ribosomal protein S2; 30S ribosomal protein S2 254298..255023 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245914.1 CDS tsf NC_016860.1 255281 256132 D COG0264 Translation elongation factor Ts; elongation factor Ts 255281..256132 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245915.1 CDS pyrH NC_016860.1 256277 257002 D COG0528 Uridylate kinase; uridylate kinase 256277..257002 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245916.1 CDS frr NC_016860.1 257149 257706 D COG0233 Ribosome recycling factor; ribosome recycling factor 257149..257706 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245917.1 CDS STMDT12_C02210 NC_016860.1 257847 259043 D COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 257847..259043 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245918.1 CDS STMDT12_C02220 NC_016860.1 259356 260114 D COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 259356..260114 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245919.1 CDS cdsA NC_016860.1 260127 260984 D COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthase 260127..260984 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245920.1 CDS STMDT12_C02240 NC_016860.1 260996 262348 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metallopeptidase RseP 260996..262348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245921.1 CDS STMDT12_C02250 NC_016860.1 262380 264794 D COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly complex YaeT protein 262380..264794 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245922.1 CDS STMDT12_C02260 NC_016860.1 264917 265402 D COG2825 Outer membrane protein; periplasmic chaperone 264917..265402 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245923.1 CDS lpxD NC_016860.1 265406 266431 D COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 265406..266431 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245924.1 CDS fabZ NC_016860.1 266537 266992 D COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 266537..266992 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245925.1 CDS STMDT12_C02290 NC_016860.1 266996 267784 D COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 266996..267784 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245926.1 CDS lpxB NC_016860.1 267784 268932 D COG0763 Lipid A disaccharide synthetase; lipid-A-disaccharide synthase 267784..268932 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245927.1 CDS rnhB NC_016860.1 268929 269525 D COG0164 Ribonuclease HII; ribonuclease HII 268929..269525 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245928.1 CDS dnaE NC_016860.1 269549 273031 D COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 269549..273031 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245929.1 CDS STMDT12_C02330 NC_016860.1 273044 274003 D COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273044..274003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245930.1 CDS STMDT12_C02340 NC_016860.1 274184 275947 D COG3979 Uncharacterized protein contain chitin-binding domain type 3; endochitinase 274184..275947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245931.1 CDS STMDT12_C02350 NC_016860.1 276023 278164 D COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase 2 276023..278164 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245932.1 CDS STMDT12_C02360 NC_016860.1 278220 278609 D COG0346 Lactoylglutathione lyase and related lyases; hypothetical protein 278220..278609 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245933.1 CDS tilS NC_016860.1 278672 279964 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthetase 278672..279964 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245934.1 CDS STMDT12_C02380 NC_016860.1 280048 280308 R COG4568 Transcriptional antiterminator; Rho-binding antiterminator complement(280048..280308) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245935.1 CDS STMDT12_C02390 NC_016860.1 280295 280495 R hypothetical protein complement(280295..280495) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245936.1 CDS STMDT12_C02400 NC_016860.1 280693 281238 D COG4681 Uncharacterized protein conserved in bacteria; hypothetical protein 280693..281238 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245937.1 CDS STMDT12_C02410 NC_016860.1 281235 281657 D COG1186 Protein chain release factor B; peptidyl-tRNA hydrolase domain-containing protein 281235..281657 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245938.1 CDS STMDT12_C02420 NC_016860.1 281689 282219 D putative frameshift mutation; copper homeostasis protein CutF 281689..282219 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245939.1 CDS STMDT12_C02430 NC_016860.1 282137 282394 D putative frameshift mutation; copper homeostasis protein CutF 282137..282394 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245940.1 CDS STMDT12_C02440 NC_016860.1 282468 284186 R COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(282468..284186) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245941.1 CDS STMDT12_C02450 NC_016860.1 284297 285004 R COG1720 Uncharacterized conserved protein; hypothetical protein complement(284297..285004) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245942.1 CDS rcsF NC_016860.1 285001 285405 R outer membrane lipoprotein complement(285001..285405) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245943.1 CDS metQ NC_016860.1 285524 286339 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; DL-methionine ABC transporter substrate binding protein complement(285524..286339) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245944.1 CDS STMDT12_C02480 NC_016860.1 286378 287031 R COG2011 ABC-type metal ion transport system, permease component; DL-methionine ABC transporter permease protein complement(286378..287031) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245945.1 CDS metN NC_016860.1 287024 288055 R COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine ABC transporter ATP-binding protein complement(287024..288055) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245946.1 CDS STMDT12_C02500 NC_016860.1 288245 288811 D COG0241 Histidinol phosphatase and related phosphatases; D,D-heptose 1,7-bisphosphate phosphatase 288245..288811 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245947.1 CDS dkgB NC_016860.1 295070 295873 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase B 295070..295873 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245948.1 CDS STMDT12_C02520 NC_016860.1 295894 296808 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(295894..296808) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245949.1 CDS STMDT12_C02530 NC_016860.1 296913 298088 D COG2814 Arabinose efflux permease; inner membrane transport protein YdhP 296913..298088 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245950.1 CDS STMDT12_C02540 NC_016860.1 298241 299020 D COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein 298241..299020 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245951.1 CDS STMDT12_C02550 NC_016860.1 299098 299868 D COG0500 SAM-dependent methyltransferases; putative methyltransferase 299098..299868 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245952.1 CDS mltD NC_016860.1 299924 301144 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D complement(299924..301144) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245953.1 CDS STMDT12_C02570 NC_016860.1 301363 302118 R COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase complement(301363..302118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245954.1 CDS STMDT12_C02580 NC_016860.1 302153 302875 D COG0500 SAM-dependent methyltransferases; putative methyltransferase 302153..302875 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245955.1 CDS rnhA NC_016860.1 302872 303339 R COG0328 Ribonuclease HI; ribonuclease H complement(302872..303339) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245956.1 CDS STMDT12_C02600 NC_016860.1 303394 304134 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon 303394..304134 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245957.1 CDS STMDT12_C02610 NC_016860.1 304468 304575 D hypothetical protein 304468..304575 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245958.1 CDS STMDT12_C02620 NC_016860.1 304666 305715 R COG3515 Uncharacterized protein conserved in bacteria; ImpA-related N- family protein complement(304666..305715) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245959.1 CDS STMDT12_C02630 NC_016860.1 305732 306727 R COG3520 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(305732..306727) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245960.1 CDS STMDT12_C02640 NC_016860.1 306724 308607 R COG3519 Uncharacterized protein conserved in bacteria; hypothetical protein complement(306724..308607) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245961.1 CDS STMDT12_C02650 NC_016860.1 308623 309117 R COG3518 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(308623..309117) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245962.1 CDS STMDT12_C02660 NC_016860.1 309114 309938 R COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion; putative cytoplasmic protein complement(309114..309938) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245963.1 CDS STMDT12_C02670 NC_016860.1 309925 310827 R putative cytoplasmic protein complement(309925..310827) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245964.1 CDS STMDT12_C02680 NC_016860.1 311195 313834 D COG0542 ATPases with chaperone activity, ATP-binding subunit; putative chaperone ATPase 311195..313834 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245965.1 CDS STMDT12_C02690 NC_016860.1 313934 314476 D COG3516 Uncharacterized protein conserved in bacteria; type VI secretion protein 313934..314476 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245966.1 CDS STMDT12_C02700 NC_016860.1 314500 316008 D COG3517 Uncharacterized protein conserved in bacteria; SciI protein 314500..316008 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245967.1 CDS STMDT12_C02710 NC_016860.1 316894 317379 D COG3157 Hemolysin-coregulated protein (uncharacterized); hemolysin-coregulated protein 316894..317379 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245968.1 CDS STMDT12_C02720 NC_016860.1 317684 318169 D putative cytoplasmic protein 317684..318169 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245969.1 CDS STMDT12_C02730 NC_016860.1 318205 318537 D hypothetical protein 318205..318537 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245970.1 CDS STMDT12_C02740 NC_016860.1 318680 319165 D COG3157 Hemolysin-coregulated protein (uncharacterized); hemolysin-coregulated protein 318680..319165 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245971.1 CDS STMDT12_C02750 NC_016860.1 319232 319768 D COG3521 Uncharacterized protein conserved in bacteria; putative outer membrane lipoprotein 319232..319768 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245972.1 CDS STMDT12_C02760 NC_016860.1 319772 321115 D COG3522 Uncharacterized protein conserved in bacteria; type VI secretion protein 319772..321115 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245973.1 CDS STMDT12_C02770 NC_016860.1 321112 322416 D COG3455 Uncharacterized protein conserved in bacteria; hypothetical protein 321112..322416 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245974.1 CDS STMDT12_C02780 NC_016860.1 322421 323194 D putative inner membrane protein 322421..323194 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245975.1 CDS STMDT12_C02790 NC_016860.1 323472 323828 D putative Shiga-like toxin A subunit 323472..323828 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245976.1 CDS STMDT12_C02800 NC_016860.1 323862 327731 D COG3523 Uncharacterized protein conserved in bacteria; putative inner membrane protein 323862..327731 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245977.1 CDS STMDT12_C02810 NC_016860.1 327731 328519 D COG3913 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 327731..328519 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245978.1 CDS STMDT12_C02820 NC_016860.1 328516 328932 D COG4893 Uncharacterized protein conserved in bacteria; hypothetical protein 328516..328932 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245979.1 CDS STMDT12_C02830 NC_016860.1 328959 329477 D pathogenicity island protein 328959..329477 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245980.1 CDS STMDT12_C02840 NC_016860.1 329874 332063 D COG3501 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 329874..332063 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245981.1 CDS STMDT12_C02850 NC_016860.1 332087 332533 D COG5435 Uncharacterized conserved protein; hypothetical protein 332087..332533 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245982.1 CDS STMDT12_C02860 NC_016860.1 332552 336646 D COG3209 Rhs family protein; putative RHS-like protein 332552..336646 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245983.1 CDS STMDT12_C02870 NC_016860.1 336640 336903 D hypothetical protein 336640..336903 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245984.1 CDS STMDT12_C02880 NC_016860.1 337003 337836 D COG3209 Rhs family protein; Rhs-family protein 337003..337836 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245985.1 CDS STMDT12_C02890 NC_016860.1 337830 338276 D putative cytoplasmic protein 337830..338276 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245986.1 CDS STMDT12_C02900 NC_016860.1 338661 338801 D hypothetical protein 338661..338801 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245987.1 CDS STMDT12_C02910 NC_016860.1 338839 339276 D putative cytoplasmic protein 338839..339276 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245988.1 CDS STMDT12_C02920 NC_016860.1 339329 339556 R hypothetical protein complement(339329..339556) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245989.1 CDS STMDT12_C02930 NC_016860.1 340102 340353 D putative cytoplasmic protein 340102..340353 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245990.1 CDS STMDT12_C02940 NC_016860.1 340390 340482 R hypothetical protein complement(340390..340482) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245991.1 CDS STMDT12_C02950 NC_016860.1 340455 340646 R putative cytoplasmic protein complement(340455..340646) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245992.1 CDS STMDT12_C02960 NC_016860.1 340756 340953 D COG2801 Transposase and inactivated derivatives; putative transposase 340756..340953 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245993.1 CDS STMDT12_C02970 NC_016860.1 341179 341460 D COG2801 Transposase and inactivated derivatives; hypothetical protein 341179..341460 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245994.1 CDS STMDT12_C02980 NC_016860.1 342222 342722 D putative outer membrane protein 342222..342722 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245995.1 CDS STMDT12_C02990 NC_016860.1 342830 343543 D COG3121 P pilus assembly protein, chaperone PapD; putative fimbrial assembly chaperone 342830..343543 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245996.1 CDS STMDT12_C03000 NC_016860.1 343567 346077 D COG3188 P pilus assembly protein, porin PapC; putative fimbrial usher protein 343567..346077 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245997.1 CDS STMDT12_C03010 NC_016860.1 346099 346569 D putative fimbrial structural protein 346099..346569 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245998.1 CDS STMDT12_C03020 NC_016860.1 346975 347796 D COG0726 Predicted xylanase/chitin deacetylase; putative xylanase/chitin deacetylase 346975..347796 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005245999.1 CDS STMDT12_C03030 NC_016860.1 347876 348136 D hypothetical protein 347876..348136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246000.1 CDS STMDT12_C03040 NC_016860.1 348325 348408 D hypothetical protein 348325..348408 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246001.1 CDS STMDT12_C03050 NC_016860.1 348614 349558 D COG0583 Transcriptional regulator; LysR-family transcriptional regulator SinR 348614..349558 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246002.1 CDS STMDT12_C03060 NC_016860.1 349894 350613 R COG3637 Opacity protein and related surface antigens; putative outer membrane adhesin complement(349894..350613) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246003.1 CDS STMDT12_C03070 NC_016860.1 350944 351351 R COG0732 Restriction endonuclease S subunits; hypothetical protein complement(350944..351351) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246004.1 CDS STMDT12_C03080 NC_016860.1 351722 352489 R COG0388 Predicted amidohydrolase; hypothetical protein complement(351722..352489) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246005.1 CDS fadE NC_016860.1 352598 355042 R COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase complement(352598..355042) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246006.1 CDS gmhA NC_016860.1 355282 355860 D COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 355282..355860 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246007.1 CDS STMDT12_C03110 NC_016860.1 356073 356840 D COG0121 Predicted glutamine amidotransferase; glutamine amidotransferase 356073..356840 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246008.1 CDS STMDT12_C03120 NC_016860.1 356811 357551 R COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein complement(356811..357551) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246009.1 CDS STMDT12_C03130 NC_016860.1 357801 358856 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV 357801..358856 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246012.1 CDS prfH NC_016860.1 360204 360818 D COG1186 Protein chain release factor B; peptide chain release factor-like protein 360204..360818 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246013.1 CDS STMDT12_C03170 NC_016860.1 360974 362431 R COG2195 Di- and tripeptidases; aminoacyl-histidine dipeptidase complement(360974..362431) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246014.1 CDS STMDT12_C03180 NC_016860.1 362680 363138 D COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; xanthine-guanine phosphoribosyltransferase 362680..363138 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246015.1 CDS frsA NC_016860.1 363227 364471 D COG1073 Hydrolases of the alpha/beta superfamily; fermentation/respiration switch protein 363227..364471 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246016.1 CDS STMDT12_C03200 NC_016860.1 364529 364930 D DNA-binding transcriptional regulator Crl 364529..364930 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246017.1 CDS STMDT12_C03210 NC_016860.1 364981 366033 R COG3203 Outer membrane protein (porin); outer membrane porin E complement(364981..366033) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246018.1 CDS STMDT12_C03220 NC_016860.1 366316 367419 D COG0263 Glutamate 5-kinase; gamma-glutamyl kinase 366316..367419 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246019.1 CDS proA NC_016860.1 367431 368681 D COG0014 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 367431..368681 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246020.1 CDS STMDT12_C03240 NC_016860.1 368887 370050 R COG0582 Integrase; integrase complement(368887..370050) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246021.1 CDS STMDT12_C03250 NC_016860.1 369927 370277 R excisionase complement(369927..370277) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246022.1 CDS STMDT12_C03260 NC_016860.1 370280 370417 R hypothetical protein complement(370280..370417) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246023.1 CDS STMDT12_C03270 NC_016860.1 370489 370773 R hypothetical protein complement(370489..370773) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246024.1 CDS STMDT12_C03280 NC_016860.1 370766 371050 R hypothetical protein complement(370766..371050) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246025.1 CDS STMDT12_C03290 NC_016860.1 371050 371841 R hypothetical protein complement(371050..371841) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246026.1 CDS STMDT12_C03300 NC_016860.1 371911 372420 R hypothetical protein complement(371911..372420) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246027.1 CDS STMDT12_C03310 NC_016860.1 372417 372587 R hypothetical protein complement(372417..372587) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246028.1 CDS STMDT12_C03320 NC_016860.1 372598 372891 R anti-RecBCD protein 2 complement(372598..372891) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246029.1 CDS STMDT12_C03330 NC_016860.1 372938 373222 R hypothetical protein complement(372938..373222) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246030.1 CDS STMDT12_C03340 NC_016860.1 373222 373929 R COG4712 Uncharacterized protein conserved in bacteria; gp49 complement(373222..373929) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246031.1 CDS STMDT12_C03350 NC_016860.1 373926 374069 R hypothetical protein complement(373926..374069) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246032.1 CDS STMDT12_C03360 NC_016860.1 374059 374247 R bacteriophage ST104 protein Kil complement(374059..374247) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246033.1 CDS STMDT12_C03370 NC_016860.1 374228 374401 R C3-like protein complement(374228..374401) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246034.1 CDS STMDT12_C03380 NC_016860.1 374471 374698 R bacteriophage ST64T protein 17 complement(374471..374698) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246035.1 CDS STMDT12_C03390 NC_016860.1 374936 375061 R hypothetical protein complement(374936..375061) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246036.1 CDS STMDT12_C03400 NC_016860.1 375061 375348 R hypothetical protein complement(375061..375348) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246037.1 CDS STMDT12_C03410 NC_016860.1 375382 375507 R pentapeptide repeat-containing protein complement(375382..375507) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246038.1 CDS STMDT12_C03420 NC_016860.1 375553 375972 D hypothetical protein 375553..375972 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246039.1 CDS STMDT12_C03430 NC_016860.1 376110 376304 R putative antirestriction protein complement(376110..376304) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246040.1 CDS STMDT12_C03440 NC_016860.1 376518 377105 D superinfection exclusion protein B 376518..377105 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246041.1 CDS STMDT12_C03450 NC_016860.1 377118 377420 R hypothetical protein complement(377118..377420) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246042.1 CDS STMDT12_C03460 NC_016860.1 377784 377987 D hypothetical protein 377784..377987 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246043.1 CDS STMDT12_C03470 NC_016860.1 378026 379069 R hypothetical protein complement(378026..379069) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246044.1 CDS STMDT12_C03480 NC_016860.1 379270 379959 R COG2932 Predicted transcriptional regulator; transcriptional activator-regulatory protein complement(379270..379959) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246045.1 CDS STMDT12_C03490 NC_016860.1 380070 380285 D COG4197 Uncharacterized protein conserved in bacteria, prophage-related; phage transcriptional regulator 380070..380285 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246046.1 CDS STMDT12_C03500 NC_016860.1 380396 380677 D transcriptional activator-regulatory protein 380396..380677 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246047.1 CDS STMDT12_C03510 NC_016860.1 380712 380873 D hypothetical protein 380712..380873 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246048.1 CDS STMDT12_C03520 NC_016860.1 380860 381681 D bacteriophage replication protein O 380860..381681 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246049.1 CDS STMDT12_C03530 NC_016860.1 381678 383054 D COG0305 Replicative DNA helicase; replicative DNA helicase 381678..383054 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246050.1 CDS STMDT12_C03540 NC_016860.1 383051 383320 D hypothetical protein 383051..383320 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246051.1 CDS STMDT12_C03550 NC_016860.1 383394 383831 D recombination protein ninB from phage origin 383394..383831 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246052.1 CDS STMDT12_C03560 NC_016860.1 383968 384144 D hypothetical protein 383968..384144 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246053.1 CDS STMDT12_C03570 NC_016860.1 384147 384488 D hypothetical protein 384147..384488 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246054.1 CDS STMDT12_C03580 NC_016860.1 384481 384657 D hypothetical protein 384481..384657 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246055.1 CDS STMDT12_C03590 NC_016860.1 384650 385261 D protein NinG from prophage 384650..385261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246056.1 CDS STMDT12_C03600 NC_016860.1 385258 385482 D hypothetical protein 385258..385482 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246057.1 CDS STMDT12_C03610 NC_016860.1 385479 385682 D hypothetical protein 385479..385682 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246058.1 CDS STMDT12_C03620 NC_016860.1 385663 385842 D hypothetical protein 385663..385842 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246059.1 CDS STMDT12_C03630 NC_016860.1 385839 386612 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; hypothetical protein 385839..386612 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246060.1 CDS STMDT12_C03640 NC_016860.1 387043 387246 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 387043..387246 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246061.1 CDS STMDT12_C03650 NC_016860.1 387251 387721 D COG3772 Phage-related lysozyme (muraminidase); phage lysozyme 387251..387721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246062.1 CDS STMDT12_C03660 NC_016860.1 387718 388185 D gp15 387718..388185 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246063.1 CDS STMDT12_C03670 NC_016860.1 388398 388928 D hypothetical protein 388398..388928 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246064.1 CDS STMDT12_C03680 NC_016860.1 389151 389393 D hypothetical protein 389151..389393 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246065.1 CDS STMDT12_C03690 NC_016860.1 389397 389786 D COG2308 Uncharacterized conserved protein; hypothetical protein 389397..389786 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246066.1 CDS STMDT12_C03700 NC_016860.1 390194 390682 D terminase small subunit 390194..390682 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246067.1 CDS STMDT12_C03710 NC_016860.1 390660 392159 D COG5565 Bacteriophage terminase large (ATPase) subunit and inactivated derivatives; putative terminase large subunit 390660..392159 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246068.1 CDS STMDT12_C03720 NC_016860.1 392159 394336 D portal protein 392159..394336 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246069.1 CDS STMDT12_C03730 NC_016860.1 394350 395261 D putative scaffolding protein 394350..395261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246070.1 CDS STMDT12_C03740 NC_016860.1 395261 396553 D putative coat protein 395261..396553 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246071.1 CDS STMDT12_C03750 NC_016860.1 396594 397154 D hypothetical protein 396594..397154 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246072.1 CDS STMDT12_C03760 NC_016860.1 397138 397638 D gp4 397138..397638 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246073.1 CDS STMDT12_C03770 NC_016860.1 397598 399016 D putative DNA stabilization protein 397598..399016 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246074.1 CDS STMDT12_C03780 NC_016860.1 399020 399721 D gp26 399020..399721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246075.1 CDS STMDT12_C03790 NC_016860.1 399721 400176 D hypothetical protein 399721..400176 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246076.1 CDS STMDT12_C03800 NC_016860.1 400179 400868 D DNA transfer protein 400179..400868 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246077.1 CDS STMDT12_C03810 NC_016860.1 400879 402315 D DNA transfer protein 400879..402315 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246078.1 CDS STMDT12_C03820 NC_016860.1 402315 404291 D COG2183 Transcriptional accessory protein; DNA transfer protein 402315..404291 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246079.1 CDS STMDT12_C03830 NC_016860.1 404744 404992 R regulatory protein complement(404744..404992) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246080.1 CDS STMDT12_C03840 NC_016860.1 405128 407131 D tail spike protein 405128..407131 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246081.1 CDS STMDT12_C03850 NC_016860.1 407190 408647 R GtrC complement(407190..408647) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246082.1 CDS STMDT12_C03860 NC_016860.1 408637 409569 R COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase complement(408637..409569) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246083.1 CDS STMDT12_C03870 NC_016860.1 409566 409928 R bactoprenol-linked glucose translocase complement(409566..409928) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246084.1 CDS STMDT12_C03880 NC_016860.1 410588 411388 R COG2801 Transposase and inactivated derivatives; IS3 transposase complement(410588..411388) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246085.1 CDS STMDT12_C03890 NC_016860.1 411387 411659 D hypothetical protein 411387..411659 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246086.1 CDS STMDT12_C03900 NC_016860.1 411643 412020 D hypothetical protein 411643..412020 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246087.1 CDS STMDT12_C03910 NC_016860.1 412130 412453 D putative cytoplasmic protein 412130..412453 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246088.1 CDS STMDT12_C03920 NC_016860.1 412800 414032 D COG0477 Permeases of the major facilitator superfamily; putative permease 412800..414032 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246089.1 CDS STMDT12_C03930 NC_016860.1 414164 415585 D COG0065 3-isopropylmalate dehydratase large subunit; isopropylmalate isomerase large subunit 414164..415585 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246090.1 CDS STMDT12_C03940 NC_016860.1 415587 416213 D COG0066 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit 415587..416213 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246091.1 CDS STMDT12_C03950 NC_016860.1 416228 417106 D COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 416228..417106 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246092.1 CDS STMDT12_C03960 NC_016860.1 417106 418020 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative hydrolase/acyltransferase 417106..418020 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246093.1 CDS STMDT12_C03970 NC_016860.1 418054 419019 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 418054..419019 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246094.1 CDS STMDT12_C03980 NC_016860.1 419927 420325 D hypothetical protein 419927..420325 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246095.1 CDS STMDT12_C03990 NC_016860.1 420372 421130 R COG3121 P pilus assembly protein, chaperone PapD; putative fimbrial chaperone complement(420372..421130) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246096.1 CDS STMDT12_C04000 NC_016860.1 421096 422421 R putative fimbrial usher protein complement(421096..422421) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246097.1 CDS STMDT12_C04010 NC_016860.1 422426 424987 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein complement(422426..424987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246098.1 CDS STMDT12_C04020 NC_016860.1 424971 425303 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaparone complement(424971..425303) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246099.1 CDS STMDT12_C04030 NC_016860.1 425305 425808 R COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase complement(425305..425808) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246100.1 CDS STMDT12_C04040 NC_016860.1 425727 426002 R COG3677 Transposase and inactivated derivatives; IS1 transposase complement(425727..426002) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246101.1 CDS STMDT12_C04050 NC_016860.1 426099 426728 D COG2200 FOG: EAL domain; putative RNT protein 426099..426728 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246102.1 CDS STMDT12_C04060 NC_016860.1 426828 427571 D COG3710 DNA-binding winged-HTH domains; putative response regulator 426828..427571 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246103.1 CDS STMDT12_C04070 NC_016860.1 427544 428032 D putative inner membrane protein 427544..428032 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246104.1 CDS STMDT12_C04080 NC_016860.1 428433 428957 D COG1629 Outer membrane receptor proteins, mostly Fe transport; attachment/invasion protein 428433..428957 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246105.1 CDS STMDT12_C04090 NC_016860.1 429101 429742 D COG2771 DNA-binding HTH domain-containing proteins; putative response regulator 429101..429742 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246106.1 CDS STMDT12_C04100 NC_016860.1 429753 429977 D hypothetical protein 429753..429977 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246107.1 CDS STMDT12_C04110 NC_016860.1 430035 430394 D cytochrome c-type biogenesis protein CycH 430035..430394 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246108.1 CDS STMDT12_C04120 NC_016860.1 430464 431921 R COG1538 Outer membrane protein; outer membrane protein complement(430464..431921) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246109.1 CDS STMDT12_C04130 NC_016860.1 431938 435105 R COG0841 Cation/multidrug efflux pump; putative cation efflux system protein complement(431938..435105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246110.1 CDS STMDT12_C04140 NC_016860.1 435102 436328 R COG0845 Membrane-fusion protein; putative HlyD family protein complement(435102..436328) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246111.1 CDS STMDT12_C04150 NC_016860.1 436605 438893 D COG2217 Cation transport ATPase; putative cation transport ATPase 436605..438893 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246112.1 CDS STMDT12_C04160 NC_016860.1 438905 439369 D COG0789 Predicted transcriptional regulators; Cu(I)-responsive transcriptional regulator 438905..439369 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246113.1 CDS STMDT12_C04170 NC_016860.1 439447 439641 D COG2608 Copper chaperone; hypothetical protein 439447..439641 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246114.1 CDS STMDT12_C04180 NC_016860.1 439934 441187 D COG0477 Permeases of the major facilitator superfamily; putative inner membrane protein 439934..441187 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246115.1 CDS STMDT12_C04190 NC_016860.1 441376 443334 D COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system StyLTI enzyme Mod 441376..443334 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246116.1 CDS STMDT12_C04200 NC_016860.1 443347 446316 D COG3587 Restriction endonuclease; DNA restriction enzyme 443347..446316 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246117.1 CDS STMDT12_C04210 NC_016860.1 446593 446694 D hypothetical protein 446593..446694 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246118.1 CDS STMDT12_C04220 NC_016860.1 446811 448214 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; putative terminal oxidase subunit I 446811..448214 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246119.1 CDS STMDT12_C04230 NC_016860.1 448211 449221 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II 448211..449221 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246120.1 CDS STMDT12_C04240 NC_016860.1 449221 449352 D hypothetical protein 449221..449352 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246121.1 CDS STMDT12_C04250 NC_016860.1 449558 450562 D COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 449558..450562 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246122.1 CDS STMDT12_C04260 NC_016860.1 450726 452816 D COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrioxamine receptor 450726..452816 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246123.1 CDS STMDT12_C04270 NC_016860.1 452857 453489 R COG1280 Putative threonine efflux protein; RhtC-like transporter complement(452857..453489) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246124.1 CDS STMDT12_C04280 NC_016860.1 453721 453996 D hypothetical protein 453721..453996 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246125.1 CDS STMDT12_C04290 NC_016860.1 454132 455757 R COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; prp operon regulator complement(454132..455757) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246126.1 CDS prpB NC_016860.1 456022 456909 D COG2513 PEP phosphonomutase and related enzymes; 2-methylisocitrate lyase 456022..456909 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246127.1 CDS STMDT12_C04310 NC_016860.1 457032 458201 D COG0372 Citrate synthase; methylcitrate synthase 457032..458201 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246128.1 CDS prpD NC_016860.1 458241 459692 D COG2079 Uncharacterized protein involved in propionate catabolism; 2-methylcitrate dehydratase 458241..459692 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246129.1 CDS prpE NC_016860.1 459733 461619 D COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; propionyl-CoA synthetase 459733..461619 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246130.1 CDS STMDT12_C04340 NC_016860.1 461723 462697 R COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase complement(461723..462697) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246131.1 CDS STMDT12_C04350 NC_016860.1 463210 466146 D COG3468 Type V secretory pathway, adhesin AidA; flagellar protein 463210..466146 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246132.1 CDS STMDT12_C04360 NC_016860.1 466232 466855 D putative DNA-binding transcriptional regulator 466232..466855 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246133.1 CDS STMDT12_C04370 NC_016860.1 466900 468057 R COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactam binding protein AmpH complement(466900..468057) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246134.1 CDS STMDT12_C04380 NC_016860.1 468404 469624 D COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components; ABC transporter permease 468404..469624 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246135.1 CDS STMDT12_C04390 NC_016860.1 469639 470733 D COG1201 Lhr-like helicases; putative outer membrane lipoprotein 469639..470733 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246136.1 CDS STMDT12_C04400 NC_016860.1 470771 471079 R inner membrane protein YaiY complement(470771..471079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246137.1 CDS STMDT12_C04410 NC_016860.1 471347 471562 D hypothetical protein 471347..471562 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246138.1 CDS ddlA NC_016860.1 471588 472682 R COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase complement(471588..472682) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246139.1 CDS STMDT12_C04430 NC_016860.1 472790 473473 D COG3921 Uncharacterized protein conserved in bacteria; hypothetical protein 472790..473473 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246140.1 CDS STMDT12_C04440 NC_016860.1 473642 474853 D COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter 473642..474853 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246141.1 CDS STMDT12_C04450 NC_016860.1 475150 475410 D hypothetical protein 475150..475410 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246142.1 CDS STMDT12_C04460 NC_016860.1 475762 476082 D hypothetical protein 475762..476082 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246143.1 CDS adrA NC_016860.1 476174 477286 D COG2199 FOG: GGDEF domain; diguanylate cyclase AdrA 476174..477286 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246144.1 CDS STMDT12_C04480 NC_016860.1 477301 478110 R COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(477301..478110) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246145.1 CDS STMDT12_C04490 NC_016860.1 478250 478705 D COG1671 Uncharacterized protein conserved in bacteria; hypothetical protein 478250..478705 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246146.1 CDS aroL NC_016860.1 478890 479435 D COG0703 Shikimate kinase; shikimate kinase 478890..479435 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246147.1 CDS STMDT12_C04510 NC_016860.1 479462 479653 D hypothetical protein 479462..479653 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246148.1 CDS STMDT12_C04520 NC_016860.1 479904 480581 D hypothetical protein 479904..480581 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246149.1 CDS STMDT12_C04530 NC_016860.1 480652 480936 D COG3123 Uncharacterized protein conserved in bacteria; hypothetical protein 480652..480936 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246150.1 CDS rdgC NC_016860.1 480974 481885 R COG2974 DNA recombination-dependent growth factor C; recombination associated protein complement(480974..481885) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246151.1 CDS STMDT12_C04550 NC_016860.1 482011 482919 D COG1940 Transcriptional regulator/sugar kinase; fructokinase 482011..482919 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246152.1 CDS STMDT12_C04560 NC_016860.1 482933 483049 D hypothetical protein 482933..483049 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246153.1 CDS STMDT12_C04570 NC_016860.1 482941 484113 R COG2814 Arabinose efflux permease; major facilitator family transporter AraJ complement(482941..484113) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246154.1 CDS STMDT12_C04580 NC_016860.1 484286 487426 R COG0419 ATPase involved in DNA repair; exonuclease subunit SbcC complement(484286..487426) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246155.1 CDS STMDT12_C04590 NC_016860.1 487423 488625 R COG0420 DNA repair exonuclease; exonuclease subunit SbcD complement(487423..488625) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246156.1 CDS STMDT12_C04600 NC_016860.1 488667 488798 R hypothetical protein complement(488667..488798) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246157.1 CDS STMDT12_C04610 NC_016860.1 488840 489529 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator PhoB 488840..489529 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246158.1 CDS phoR NC_016860.1 489599 490894 D COG0642 Signal transduction histidine kinase; phosphate regulon sensor protein 489599..490894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246159.1 CDS STMDT12_C04630 NC_016860.1 491303 492622 D COG1114 Branched-chain amino acid permeases; branched-chain amino acid transport system II carrier protein 491303..492622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246160.1 CDS proY NC_016860.1 492697 494067 D COG1113 Gamma-aminobutyrate permease and related permeases; putative proline-specific permease 492697..494067 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246161.1 CDS STMDT12_C04650 NC_016860.1 494229 496046 D COG0366 Glycosidases; maltodextrin glucosidase 494229..496046 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246162.1 CDS STMDT12_C04660 NC_016860.1 496118 496720 R COG0450 Peroxiredoxin; peroxiredoxin 2 complement(496118..496720) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246163.1 CDS acpH NC_016860.1 496930 497511 R COG3124 Uncharacterized protein conserved in bacteria; [acyl-carrier-protein] phosphodiesterase complement(496930..497511) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246164.1 CDS queA NC_016860.1 497605 498669 D COG0809 S-adenosylmethionine:tRNA- ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase 497605..498669 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246165.1 CDS tgt NC_016860.1 498866 499993 D COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 498866..499993 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246166.1 CDS yajC NC_016860.1 500016 500348 D COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 500016..500348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246167.1 CDS secD NC_016860.1 500409 502223 D COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 500409..502223 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246168.1 CDS secF NC_016860.1 502234 503205 D COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 502234..503205 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246169.1 CDS STMDT12_C04730 NC_016860.1 503353 503718 D COG3324 Predicted enzyme related to lactoylglutathione lyase; hypothetical protein 503353..503718 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246170.1 CDS STMDT12_C04740 NC_016860.1 503744 504436 D COG2378 Predicted transcriptional regulator; DeoR family transcriptional regulator 503744..504436 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246171.1 CDS STMDT12_C04750 NC_016860.1 504606 504953 D COG1403 Restriction endonuclease; hypothetical protein 504606..504953 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246172.1 CDS STMDT12_C04760 NC_016860.1 505391 505498 D hypothetical protein 505391..505498 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246173.1 CDS STMDT12_C04770 NC_016860.1 505582 506445 R COG3248 Nucleoside-binding outer membrane protein; nucleoside channel; receptor of phage T6 and colicin K complement(505582..506445) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246174.1 CDS STMDT12_C04780 NC_016860.1 506745 507284 R hypothetical protein complement(506745..507284) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246175.1 CDS nrdR NC_016860.1 507436 507885 D COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR 507436..507885 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246176.1 CDS ribD NC_016860.1 507889 508992 D COG0117 Pyrimidine deaminase; riboflavin biosynthesis protein RibD 507889..508992 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246177.1 CDS ribH NC_016860.1 509081 509551 D COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase 509081..509551 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246178.1 CDS nusB NC_016860.1 509572 509991 D COG0781 Transcription termination factor; transcription antitermination protein NusB 509572..509991 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246179.1 CDS STMDT12_C04830 NC_016860.1 510070 511047 D COG0611 Thiamine monophosphate kinase; thiamine monophosphate kinase 510070..511047 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246180.1 CDS STMDT12_C04840 NC_016860.1 511025 511540 D COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 511025..511540 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246181.1 CDS STMDT12_C04850 NC_016860.1 511644 512618 R COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative oxidoreductase complement(511644..512618) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246182.1 CDS STMDT12_C04860 NC_016860.1 512675 514537 R COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase complement(512675..514537) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246183.1 CDS STMDT12_C04870 NC_016860.1 514561 515460 R COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase complement(514561..515460) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246184.1 CDS STMDT12_C04880 NC_016860.1 515461 515703 R COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(515461..515703) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246185.1 CDS STMDT12_C04890 NC_016860.1 515913 517361 D COG0301 Thiamine biosynthesis ATP pyrophosphatase; thiamine biosynthesis protein ThiI 515913..517361 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246186.1 CDS STMDT12_C04900 NC_016860.1 517405 518202 R COG1177 ABC-type spermidine/putrescine transport system, permease component II; 2-aminoethylphosphonate ABC transporter permease protein PhnV complement(517405..518202) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246187.1 CDS STMDT12_C04910 NC_016860.1 518205 519065 R COG0555 ABC-type sulfate transport system, permease component; putative 2-aminoethylphosphonate ABC transporter permease protein complement(518205..519065) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246188.1 CDS STMDT12_C04920 NC_016860.1 519068 520177 R COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; 2-aminoethylphosphonate transporter complement(519068..520177) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246189.1 CDS STMDT12_C04930 NC_016860.1 520183 521196 R COG1840 ABC-type Fe3+ transport system, periplasmic component; 2-aminoethylphosphonate transporter complement(520183..521196) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246190.1 CDS STMDT12_C04940 NC_016860.1 521394 522113 R COG2188 Transcriptional regulators; transcriptional regulator protein complement(521394..522113) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246191.1 CDS STMDT12_C04950 NC_016860.1 522253 523356 D COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; 2-aminoethylphosphonate--pyruvate transaminase 522253..523356 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246192.1 CDS STMDT12_C04960 NC_016860.1 523366 524175 D COG0637 Predicted phosphatase/phosphohexomutase; phosphonoacetaldehyde hydrolase 523366..524175 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246193.1 CDS STMDT12_C04970 NC_016860.1 524272 524862 R COG0693 Putative intracellular protease/amidase; hypothetical protein complement(524272..524862) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246194.1 CDS STMDT12_C04980 NC_016860.1 524825 525736 R COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(524825..525736) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246195.1 CDS STMDT12_C04990 NC_016860.1 525862 526353 D COG1666 Uncharacterized protein conserved in bacteria; putative nucleotide-binding protein 525862..526353 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246196.1 CDS STMDT12_C05000 NC_016860.1 526400 527764 R COG0477 Permeases of the major facilitator superfamily; inner membrane transport protein YajR complement(526400..527764) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246197.1 CDS STMDT12_C05010 NC_016860.1 528301 529812 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 528301..529812 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246198.1 CDS STMDT12_C05020 NC_016860.1 529824 531317 D COG0790 FOG: TPR repeat, SEL1 subfamily; tetratricopeptide repeat protein 529824..531317 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246199.1 CDS STMDT12_C05030 NC_016860.1 531399 532289 R COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); protoheme IX farnesyltransferase complement(531399..532289) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246200.1 CDS STMDT12_C05040 NC_016860.1 532301 532630 R COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; cytochrome o ubiquinol oxidase subunit IV complement(532301..532630) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246201.1 CDS STMDT12_C05050 NC_016860.1 532630 533244 R COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome o ubiquinol oxidase subunit III complement(532630..533244) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246202.1 CDS STMDT12_C05060 NC_016860.1 533234 535225 R COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome o ubiquinol oxidase subunit I complement(533234..535225) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246203.1 CDS STMDT12_C05070 NC_016860.1 535236 536192 R COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome o ubiquinol oxidase subunit II complement(535236..536192) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246204.1 CDS ampG NC_016860.1 536645 538126 R COG0477 Permeases of the major facilitator superfamily; muropeptide transporter complement(536645..538126) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246205.1 CDS STMDT12_C05090 NC_016860.1 538164 538742 R COG3056 Uncharacterized lipoprotein; hypothetical protein complement(538164..538742) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246206.1 CDS STMDT12_C05100 NC_016860.1 539046 539363 D COG0271 Stress-induced morphogen (activity unknown); transcriptional regulator BolA 539046..539363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246207.1 CDS tig NC_016860.1 539710 541008 D COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 539710..541008 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246208.1 CDS STMDT12_C05120 NC_016860.1 541255 541878 D COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit ClpP 541255..541878 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246209.1 CDS clpX NC_016860.1 542130 543401 D COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent Clp protease ATP-binding subunit 542130..543401 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246210.1 CDS STMDT12_C05140 NC_016860.1 543587 545941 D COG0466 ATP-dependent Lon protease, bacterial type; DNA-binding ATP-dependent protease La 543587..545941 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246211.1 CDS STMDT12_C05150 NC_016860.1 546150 546422 D COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit beta 546150..546422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246212.1 CDS ppiD NC_016860.1 546713 548584 D COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase D 546713..548584 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246213.1 CDS STMDT12_C05170 NC_016860.1 548734 549108 D COG1555 DNA uptake protein and related DNA-binding proteins; competence protein ComEA 548734..549108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246214.1 CDS STMDT12_C05180 NC_016860.1 549212 549610 D COG0824 Predicted thioesterase; thioesterase superfamily protein 549212..549610 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246215.1 CDS STMDT12_C05190 NC_016860.1 549716 550411 R COG0603 Predicted PP-loop superfamily ATPase; queuosine biosynthesis protein QueC complement(549716..550411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246216.1 CDS STMDT12_C05200 NC_016860.1 550476 552176 R COG4533 ABC-type uncharacterized transport system, periplasmic component; ABC transporter substrate binding protein complement(550476..552176) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246217.1 CDS STMDT12_C05210 NC_016860.1 552277 553095 D COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein 552277..553095 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246218.1 CDS STMDT12_C05220 NC_016860.1 553145 554197 R COG0031 Cysteine synthase; pyridoxal-5'-phosphate-dependent enzyme beta subunit complement(553145..554197) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246219.1 CDS STMDT12_C05230 NC_016860.1 554313 554771 D COG1522 Transcriptional regulators; putative transcriptional regulator 554313..554771 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246220.1 CDS STMDT12_C05240 NC_016860.1 554812 556584 D COG1132 ABC-type multidrug transport system, ATPase and permease components; putative multidrug ABC transporter permease/ATP-binding protein 554812..556584 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246221.1 CDS STMDT12_C05250 NC_016860.1 556577 558358 D COG1132 ABC-type multidrug transport system, ATPase and permease components; putative multidrug ABC transporter permease/ATP-binding protein 556577..558358 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246222.1 CDS STMDT12_C05260 NC_016860.1 558571 558909 D COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 2 558571..558909 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246223.1 CDS STMDT12_C05270 NC_016860.1 558941 560227 D COG0004 Ammonia permease; ammonium transporter 558941..560227 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246224.1 CDS STMDT12_C05280 NC_016860.1 560327 561187 R COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase II complement(560327..561187) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246225.1 CDS STMDT12_C05290 NC_016860.1 561402 561971 D COG3126 Uncharacterized protein conserved in bacteria; putative lipoprotein 561402..561971 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246226.1 CDS STMDT12_C05300 NC_016860.1 562004 562315 R COG3695 Predicted methylated DNA-protein cysteine methyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase complement(562004..562315) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246227.1 CDS STMDT12_C05310 NC_016860.1 562624 564174 R COG4943 Predicted signal transduction protein containing sensor and EAL domains; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein complement(562624..564174) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246228.1 CDS rpmE2 NC_016860.1 564399 564659 D COG0254 Ribosomal protein L31; 50S ribosomal protein L31 564399..564659 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246229.1 CDS rpmJ2 NC_016860.1 564665 564805 D COG0257 Ribosomal protein L36; 50S ribosomal protein L36 564665..564805 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246230.1 CDS STMDT12_C05340 NC_016860.1 564861 565331 R hypothetical protein complement(564861..565331) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246231.1 CDS STMDT12_C05350 NC_016860.1 565448 565999 R COG0110 Acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase complement(565448..565999) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246232.1 CDS STMDT12_C05360 NC_016860.1 566178 566396 R hemolysin expression modulating protein complement(566178..566396) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246233.1 CDS STMDT12_C05370 NC_016860.1 566424 566798 R hypothetical protein complement(566424..566798) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246234.1 CDS STMDT12_C05380 NC_016860.1 567294 570443 R COG0841 Cation/multidrug efflux pump; acriflavine resistance protein B complement(567294..570443) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246235.1 CDS STMDT12_C05390 NC_016860.1 570466 571659 R COG0845 Membrane-fusion protein; acriflavine resistance protein A complement(570466..571659) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246236.1 CDS STMDT12_C05400 NC_016860.1 571801 572454 D COG1309 Transcriptional regulator; DNA-binding transcriptional repressor AcrR 571801..572454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246237.1 CDS STMDT12_C05410 NC_016860.1 572573 575935 D COG3264 Small-conductance mechanosensitive channel; potassium efflux protein KefA 572573..575935 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246238.1 CDS STMDT12_C05420 NC_016860.1 575977 576912 R COG5464 Uncharacterized conserved protein; putative transposase complement(575977..576912) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246239.1 CDS STMDT12_C05430 NC_016860.1 576982 577149 R hypothetical protein complement(576982..577149) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246240.1 CDS STMDT12_C05440 NC_016860.1 577163 577678 R COG3923 Primosomal replication protein N''; primosomal replication protein N'' complement(577163..577678) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246241.1 CDS STMDT12_C05450 NC_016860.1 577759 578136 D COG2832 Uncharacterized protein conserved in bacteria; hypothetical protein 577759..578136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246242.1 CDS STMDT12_C05460 NC_016860.1 578289 578840 D COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 578289..578840 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246243.1 CDS STMDT12_C05470 NC_016860.1 578954 580882 D COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 578954..580882 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246244.1 CDS STMDT12_C05480 NC_016860.1 580928 581257 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 580928..581257 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246245.1 CDS recR NC_016860.1 581257 581862 D COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 581257..581862 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246246.1 CDS STMDT12_C05500 NC_016860.1 581973 583847 D COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 581973..583847 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246247.1 CDS adk NC_016860.1 584088 584732 D COG0563 Adenylate kinase and related kinases; adenylate kinase 584088..584732 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246248.1 CDS hemH NC_016860.1 584961 585923 D COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 584961..585923 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246249.1 CDS STMDT12_C05530 NC_016860.1 585920 586891 R COG0657 Esterase/lipase; acetyl esterase complement(585920..586891) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246250.1 CDS STMDT12_C05540 NC_016860.1 587044 588348 D COG0524 Sugar kinases, ribokinase family; inosine-guanosine kinase 587044..588348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246251.1 CDS STMDT12_C05550 NC_016860.1 588397 590073 R COG4651 Kef-type K+ transport system, predicted NAD-binding component; putative cation:proton antiport protein complement(588397..590073) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246252.1 CDS STMDT12_C05560 NC_016860.1 590151 590276 D hypothetical protein 590151..590276 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246253.1 CDS STMDT12_C05570 NC_016860.1 590288 591508 R COG0477 Permeases of the major facilitator superfamily; fosmidomycin resistance protein complement(590288..591508) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246254.1 CDS ushA NC_016860.1 591681 593333 D COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 591681..593333 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246255.1 CDS STMDT12_C05590 NC_016860.1 593450 593929 R COG2606 Uncharacterized conserved protein; hypothetical protein complement(593450..593929) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246256.1 CDS STMDT12_C05600 NC_016860.1 594131 594925 R COG3735 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(594131..594925) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246257.1 CDS STMDT12_C05610 NC_016860.1 595011 595838 R COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein complement(595011..595838) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246258.1 CDS copA NC_016860.1 595992 598493 R COG2217 Cation transport ATPase; copper-exporting P-type ATPase A complement(595992..598493) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246259.1 CDS STMDT12_C05630 NC_016860.1 598603 599019 D COG0789 Predicted transcriptional regulators; DNA-binding transcriptional regulator CueR 598603..599019 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246260.1 CDS STMDT12_C05640 NC_016860.1 599020 599472 R COG1585 Membrane protein implicated in regulation of membrane protease activity; inner membrane protein YbbJ complement(599020..599472) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246261.1 CDS STMDT12_C05650 NC_016860.1 599469 600386 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein complement(599469..600386) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246262.1 CDS STMDT12_C05660 NC_016860.1 600533 601210 D COG4619 ABC-type uncharacterized transport system, ATPase component; putative ABC transporter ATP-binding protein YbbL 600533..601210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246263.1 CDS STMDT12_C05670 NC_016860.1 601197 601976 D COG0390 ABC-type uncharacterized transport system, permease component; putative metal resistance protein 601197..601976 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246264.1 CDS STMDT12_C05680 NC_016860.1 602062 602916 R COG3118 Thioredoxin domain-containing protein; thioredoxin domain-containing protein complement(602062..602916) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246265.1 CDS STMDT12_C05690 NC_016860.1 602976 603746 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase complement(602976..603746) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246266.1 CDS STMDT12_C05700 NC_016860.1 603901 604515 R COG2755 Lysophospholipase L1 and related esterases; multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(603901..604515) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246267.1 CDS STMDT12_C05710 NC_016860.1 604486 605172 D COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; putative ABC transporter ATP-binding protein YbbA 604486..605172 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246268.1 CDS STMDT12_C05720 NC_016860.1 605169 607583 D COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; hypothetical protein 605169..607583 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246269.1 CDS STMDT12_C05730 NC_016860.1 607580 607684 D hypothetical protein 607580..607684 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246270.1 CDS STMDT12_C05740 NC_016860.1 607769 608902 D COG3203 Outer membrane protein (porin); outer membrane protein 607769..608902 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246271.1 CDS STMDT12_C05750 NC_016860.1 609159 609989 D COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; lipoprotein 609159..609989 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246272.1 CDS STMDT12_C05760 NC_016860.1 610026 611042 D COG1135 ABC-type metal ion transport system, ATPase component; methionine import ABC transporter ATP-binding protein MetN 2 610026..611042 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246273.1 CDS STMDT12_C05770 NC_016860.1 611035 611694 D COG2011 ABC-type metal ion transport system, permease component; ABC transporter permease 611035..611694 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246274.1 CDS STMDT12_C05780 NC_016860.1 611733 612827 R COG2603 Predicted ATPase; tRNA 2-selenouridine synthase complement(611733..612827) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246275.1 CDS STMDT12_C05790 NC_016860.1 612897 613823 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator AllS complement(612897..613823) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246276.1 CDS STMDT12_C05800 NC_016860.1 614050 614532 D COG3194 Ureidoglycolate hydrolase; ureidoglycolate hydrolase 614050..614532 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246277.1 CDS STMDT12_C05810 NC_016860.1 614611 615429 D COG1414 Transcriptional regulator; DNA-binding transcriptional repressor AllR 614611..615429 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246278.1 CDS STMDT12_C05820 NC_016860.1 615514 617295 D COG3960 Glyoxylate carboligase; glyoxylate carboligase 615514..617295 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246279.1 CDS STMDT12_C05830 NC_016860.1 617308 618084 D COG3622 Hydroxypyruvate isomerase; hydroxypyruvate isomerase 617308..618084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246280.1 CDS STMDT12_C05840 NC_016860.1 618185 619063 D COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; 2-hydroxy-3-oxopropionate reductase 618185..619063 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246281.1 CDS STMDT12_C05850 NC_016860.1 619129 620376 D COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter 619129..620376 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246282.1 CDS STMDT12_C05860 NC_016860.1 620472 621926 D COG1953 Cytosine/uracil/thiamine/allantoin permeases; allantoin permease 620472..621926 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246283.1 CDS STMDT12_C05870 NC_016860.1 622005 623366 D COG0044 Dihydroorotase and related cyclic amidohydrolases; allantoinase 622005..623366 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246284.1 CDS STMDT12_C05880 NC_016860.1 623425 624723 D COG2233 Xanthine/uracil permeases; putative purine permease YbbY 623425..624723 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246285.1 CDS STMDT12_C05890 NC_016860.1 624746 625894 D COG1929 Glycerate kinase; glycerate kinase 624746..625894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246286.1 CDS STMDT12_C05900 NC_016860.1 625974 626759 R COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; hypothetical protein complement(625974..626759) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246287.1 CDS STMDT12_C05910 NC_016860.1 626770 628005 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; allantoate amidohydrolase complement(626770..628005) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246288.1 CDS STMDT12_C05920 NC_016860.1 628027 629076 R COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase complement(628027..629076) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246289.1 CDS STMDT12_C05930 NC_016860.1 629407 631071 D COG0074 Succinyl-CoA synthetase, alpha subunit; membrane protein FdrA 629407..631071 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246290.1 CDS STMDT12_C05940 NC_016860.1 631081 632340 D hypothetical protein 631081..632340 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246291.1 CDS STMDT12_C05950 NC_016860.1 632352 633161 D hypothetical protein 632352..633161 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246292.1 CDS STMDT12_C05960 NC_016860.1 633165 634058 D COG0549 Carbamate kinase; carbamate kinase 633165..634058 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246293.1 CDS STMDT12_C05970 NC_016860.1 634099 635166 R COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); phosphoribosylaminoimidazole carboxylase ATPase subunit complement(634099..635166) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246294.1 CDS STMDT12_C05980 NC_016860.1 635163 635672 R COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(635163..635672) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246295.1 CDS STMDT12_C05990 NC_016860.1 635790 636512 R COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase complement(635790..636512) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246296.1 CDS ppiB NC_016860.1 636515 637009 R COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B complement(636515..637009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246297.1 CDS cysS NC_016860.1 637182 638567 D COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 637182..638567 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246298.1 CDS STMDT12_C06020 NC_016860.1 638611 639435 R COG4727 Uncharacterized protein conserved in bacteria; putative outer membrane protein complement(638611..639435) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246299.1 CDS STMDT12_C06030 NC_016860.1 639432 639869 R hypothetical protein complement(639432..639869) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246300.1 CDS STMDT12_C06040 NC_016860.1 639862 640407 R COG1988 Predicted membrane-bound metal-dependent hydrolases; inner membrane protein ybcI complement(639862..640407) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246301.1 CDS STMDT12_C06050 NC_016860.1 640535 640747 R COG2501 Uncharacterized conserved protein; hypothetical protein complement(640535..640747) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246302.1 CDS STMDT12_C06060 NC_016860.1 640749 641615 R COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(640749..641615) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246303.1 CDS STMDT12_C06070 NC_016860.1 642162 642719 D COG3539 P pilus assembly protein, pilin FimA; type-1 fimbrial protein, A chain 642162..642719 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246304.1 CDS STMDT12_C06080 NC_016860.1 642834 643328 D COG3539 P pilus assembly protein, pilin FimA; hypothetical protein 642834..643328 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246305.1 CDS STMDT12_C06090 NC_016860.1 643372 644064 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaparone 643372..644064 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246306.1 CDS STMDT12_C06100 NC_016860.1 644095 646707 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 644095..646707 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246307.1 CDS STMDT12_C06110 NC_016860.1 646722 647729 D minor fimbrial subunit 646722..647729 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246308.1 CDS STMDT12_C06120 NC_016860.1 647739 648257 D COG3539 P pilus assembly protein, pilin FimA; putative fimbrial protein 647739..648257 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246309.1 CDS STMDT12_C06130 NC_016860.1 648303 648935 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator FimZ complement(648303..648935) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246310.1 CDS STMDT12_C06140 NC_016860.1 649539 650261 R COG1270 Cobalamin biosynthesis protein CobD/CbiB; putative regulatory protein complement(649539..650261) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246311.1 CDS STMDT12_C06150 NC_016860.1 650280 650588 R COG2200 FOG: EAL domain; hypothetical protein complement(650280..650588) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246312.1 CDS STMDT12_C06160 NC_016860.1 650753 651349 R putative fimbrial protein complement(650753..651349) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246313.1 CDS STMDT12_C06170 NC_016860.1 652246 652464 R COG2963 Transposase and inactivated derivatives; hypothetical protein complement(652246..652464) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246314.1 CDS STMDT12_C06180 NC_016860.1 652636 652794 D hypothetical protein 652636..652794 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246315.1 CDS STMDT12_C06190 NC_016860.1 652851 654491 R putative inner membrane protein complement(652851..654491) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246316.1 CDS STMDT12_C06200 NC_016860.1 654484 655410 R COG0463 Glycosyltransferases involved in cell wall biogenesis; bactoprenol glucosyl transferase complement(654484..655410) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246317.1 CDS STMDT12_C06210 NC_016860.1 655407 655769 R COG2246 Predicted membrane protein; putative glucose translocase complement(655407..655769) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246318.1 CDS STMDT12_C06220 NC_016860.1 656267 656398 R copE1 complement(656267..656398) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246319.1 CDS STMDT12_C06230 NC_016860.1 656637 656966 R COG0642 Signal transduction histidine kinase; sensor kinase complement(656637..656966) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246320.1 CDS STMDT12_C06240 NC_016860.1 657090 657254 D COG3696 Putative silver efflux pump; hypothetical protein 657090..657254 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246321.1 CDS STMDT12_C06250 NC_016860.1 657305 658159 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(657305..658159) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246322.1 CDS STMDT12_C06260 NC_016860.1 658375 659700 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulfide oxidoreductase 658375..659700 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246323.1 CDS STMDT12_C06270 NC_016860.1 659857 660093 D hypothetical protein 659857..660093 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246324.1 CDS STMDT12_C06280 NC_016860.1 660106 660666 D COG3059 Predicted membrane protein; hypothetical protein 660106..660666 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246325.1 CDS STMDT12_C06290 NC_016860.1 660745 661920 R COG1076 DnaJ-domain-containing proteins 1; putative ATPase complement(660745..661920) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246326.1 CDS STMDT12_C06300 NC_016860.1 662246 663640 D COG1113 Gamma-aminobutyrate permease and related permeases; phenylalanine transporter 662246..663640 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246327.1 CDS STMDT12_C06310 NC_016860.1 663682 664929 R COG0668 Small-conductance mechanosensitive channel; small-conductance mechanosensitive channel complement(663682..664929) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246328.1 CDS STMDT12_C06320 NC_016860.1 665240 667210 D COG3240 Phospholipase/lecithinase/hemolysin; lipase 1 665240..667210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246329.1 CDS STMDT12_C06330 NC_016860.1 667377 670106 D COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; putative inner membrane protein 667377..670106 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246330.1 CDS STMDT12_C06340 NC_016860.1 670234 671220 R COG2222 Predicted phosphosugar isomerases; sugar isomerase complement(670234..671220) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246331.1 CDS STMDT12_C06350 NC_016860.1 671287 672348 R COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; sugar isomerase complement(671287..672348) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246332.1 CDS STMDT12_C06360 NC_016860.1 672363 673217 R COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; mannose-specific PTS system IID protein complement(672363..673217) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246333.1 CDS STMDT12_C06370 NC_016860.1 673220 673963 R COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; sorbose-specific PTS system IIC protein complement(673220..673963) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246334.1 CDS STMDT12_C06380 NC_016860.1 673978 674448 R COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; sorbose subfamily PTS system IIB protein complement(673978..674448) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246335.1 CDS STMDT12_C06390 NC_016860.1 674426 674875 R COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative mannose-specific PTS system IIAB protein complement(674426..674875) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246336.1 CDS STMDT12_C06400 NC_016860.1 675075 675734 R COG0778 Nitroreductase; dihydropteridine reductase complement(675075..675734) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246337.1 CDS STMDT12_C06410 NC_016860.1 675831 676199 R COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein complement(675831..676199) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246338.1 CDS STMDT12_C06420 NC_016860.1 676199 676780 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(676199..676780) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246339.1 CDS STMDT12_C06430 NC_016860.1 677069 677410 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RamA 677069..677410 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246340.1 CDS STMDT12_C06440 NC_016860.1 677416 677640 R hypothetical protein complement(677416..677640) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246341.1 CDS STMDT12_C06450 NC_016860.1 677731 678849 R COG2170 Uncharacterized conserved protein; carboxylate-amine ligase complement(677731..678849) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246342.1 CDS STMDT12_C06460 NC_016860.1 678861 679565 R COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase entD complement(678861..679565) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246343.1 CDS STMDT12_C06470 NC_016860.1 679611 681866 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA complement(679611..681866) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246344.1 CDS STMDT12_C06480 NC_016860.1 682055 683269 D COG2382 Enterochelin esterase and related enzymes; enterobactin/ferric enterobactin esterase 682055..683269 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246345.1 CDS STMDT12_C06490 NC_016860.1 683300 683518 D COG3251 Uncharacterized protein conserved in bacteria; hypothetical protein 683300..683518 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246346.1 CDS entF NC_016860.1 683515 687399 D COG1020 Non-ribosomal peptide synthetase modules and related proteins; enterobactin synthase subunit F 683515..687399 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246347.1 CDS STMDT12_C06510 NC_016860.1 687649 688785 D COG3765 Chain length determinant protein; ferric enterobactin transport protein FepE 687649..688785 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246348.1 CDS STMDT12_C06520 NC_016860.1 688838 689632 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-enterobactin ABC transporter ATP-binding protein complement(688838..689632) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246349.1 CDS STMDT12_C06530 NC_016860.1 689629 690618 R COG4779 ABC-type enterobactin transport system, permease component; iron-enterobactin ABC transporter permease protein complement(689629..690618) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246350.1 CDS STMDT12_C06540 NC_016860.1 690618 691625 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-enterobactin ABC transporter permease protein complement(690618..691625) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246351.1 CDS STMDT12_C06550 NC_016860.1 691736 692980 D COG0477 Permeases of the major facilitator superfamily; enterobactin exporter EntS 691736..692980 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246352.1 CDS STMDT12_C06560 NC_016860.1 693043 693999 R COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component; iron-enterobactin ABC transporter substrate binding protein complement(693043..693999) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246353.1 CDS STMDT12_C06570 NC_016860.1 694308 695483 D COG1169 Isochorismate synthase; isochorismate synthase 694308..695483 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246354.1 CDS entE NC_016860.1 695493 697103 D COG1021 Peptide arylation enzymes; enterobactin synthase subunit E 695493..697103 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246355.1 CDS STMDT12_C06590 NC_016860.1 697117 697974 D COG1535 Isochorismate hydrolase; isochorismatase 697117..697974 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246356.1 CDS STMDT12_C06600 NC_016860.1 697974 698729 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxybenzoate-2,3-dehydrogenase 697974..698729 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246357.1 CDS STMDT12_C06610 NC_016860.1 698732 699145 D COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 698732..699145 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246358.1 CDS STMDT12_C06620 NC_016860.1 699327 701432 D COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein 699327..701432 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246359.1 CDS STMDT12_C06630 NC_016860.1 701496 701693 D COG2879 Uncharacterized small protein; hypothetical protein 701496..701693 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246360.1 CDS STMDT12_C06640 NC_016860.1 701729 702817 R COG0371 Glycerol dehydrogenase and related enzymes; hypothetical protein complement(701729..702817) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246361.1 CDS STMDT12_C06650 NC_016860.1 702944 704104 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; putative aminotransferase 702944..704104 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246362.1 CDS STMDT12_C06660 NC_016860.1 704105 704734 R COG1475 Predicted transcriptional regulators; hypothetical protein complement(704105..704734) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246363.1 CDS STMDT12_C06670 NC_016860.1 704695 705930 R COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; hypothetical protein complement(704695..705930) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246364.1 CDS STMDT12_C06680 NC_016860.1 706096 706998 R COG0583 Transcriptional regulator; putative LysR-family transcriptional regulator complement(706096..706998) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246365.1 CDS dsbG NC_016860.1 707315 708061 R COG1651 Protein-disulfide isomerase; disulfide isomerase/thiol-disulfide oxidase complement(707315..708061) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246366.1 CDS STMDT12_C06700 NC_016860.1 708502 709065 D COG0450 Peroxiredoxin; alkyl hydroperoxide reductase subunit C 708502..709065 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246367.1 CDS STMDT12_C06710 NC_016860.1 709307 710872 D COG3634 Alkyl hydroperoxide reductase, large subunit; alkyl hydroperoxide reductase subunit F 709307..710872 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246368.1 CDS STMDT12_C06720 NC_016860.1 711204 711764 D COG3381 Uncharacterized component of anaerobic dehydrogenases; putative anaerobic dehydrogenase component 711204..711764 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246369.1 CDS STMDT12_C06730 NC_016860.1 711757 714036 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative oxidoreductase 711757..714036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246370.1 CDS STMDT12_C06740 NC_016860.1 714033 714590 D COG0437 Fe-S-cluster-containing hydrogenase components 1; molybdopterin-containing oxidoreductase iron-sulfur subunit 714033..714590 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246371.1 CDS STMDT12_C06750 NC_016860.1 714590 715357 D COG3302 DMSO reductase anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 714590..715357 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246372.1 CDS STMDT12_C06760 NC_016860.1 715425 715853 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UP12 complement(715425..715853) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246373.1 CDS STMDT12_C06770 NC_016860.1 716076 717314 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative dehydrogenase 716076..717314 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246374.1 CDS STMDT12_C06780 NC_016860.1 717397 717807 R COG0782 Transcription elongation factor; nucleoside diphosphate kinase regulator complement(717397..717807) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246375.1 CDS STMDT12_C06790 NC_016860.1 718042 718848 R COG3719 Ribonuclease I; ribonuclease I complement(718042..718848) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246376.1 CDS STMDT12_C06800 NC_016860.1 718958 720421 R COG0471 Di- and tricarboxylate transporters; citrate:succinate transport protein complement(718958..720421) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246377.1 CDS citG NC_016860.1 720459 721355 R COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase complement(720459..721355) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246378.1 CDS citX NC_016860.1 721327 721878 R COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); apo-citrate lyase complement(721327..721878) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246379.1 CDS STMDT12_C06830 NC_016860.1 721882 723411 R COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha complement(721882..723411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246380.1 CDS STMDT12_C06840 NC_016860.1 723421 724329 R COG2301 Citrate lyase beta subunit; citrate lyase subunit beta complement(723421..724329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246381.1 CDS STMDT12_C06850 NC_016860.1 724326 724622 R COG3052 Citrate lyase, gamma subunit; citrate lyase gamma chain complement(724326..724622) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246382.1 CDS citC NC_016860.1 724619 725695 R COG3053 Citrate lyase synthetase; citrate lyase synthetase complement(724619..725695) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246383.1 CDS STMDT12_C06870 NC_016860.1 726080 727741 D COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor kinase 726080..727741 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246384.1 CDS dpiA NC_016860.1 727710 728390 D COG4565 Response regulator of citrate/malate metabolism; two-component response regulator DpiA 727710..728390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246385.1 CDS dcuC NC_016860.1 728444 729829 R COG3069 C4-dicarboxylate transporter; C4-dicarboxylate transporter DcuC complement(728444..729829) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246386.1 CDS pagP NC_016860.1 730220 730780 D palmitoyl transferase 730220..730780 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246387.1 CDS cspE NC_016860.1 730968 731177 D COG1278 Cold shock proteins; cold shock protein CspE 730968..731177 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246388.1 CDS STMDT12_C06920 NC_016860.1 731235 731549 R COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB complement(731235..731549) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246389.1 CDS STMDT12_C06930 NC_016860.1 731709 732497 D COG0388 Predicted amidohydrolase; putative hydrolase 731709..732497 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246390.1 CDS tatE NC_016860.1 732626 732829 D COG1826 Sec-independent protein secretion pathway components; twin-arginine protein translocation system subunit TatE 732626..732829 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246391.1 CDS STMDT12_C06950 NC_016860.1 732915 733880 R COG0320 Lipoate synthase; lipoyl synthase complement(732915..733880) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246392.1 CDS STMDT12_C06960 NC_016860.1 734086 735039 R COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(734086..735039) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246393.1 CDS STMDT12_C06970 NC_016860.1 735341 735982 R COG0321 Lipoate-protein ligase B; lipoate-protein ligase B complement(735341..735982) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246394.1 CDS STMDT12_C06980 NC_016860.1 736082 736345 R COG2921 Uncharacterized conserved protein; hypothetical protein complement(736082..736345) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246395.1 CDS STMDT12_C06990 NC_016860.1 736454 737665 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase complement(736454..737665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246396.1 CDS STMDT12_C07000 NC_016860.1 737805 738950 R COG0797 Lipoproteins; rare lipoprotein A complement(737805..738950) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246397.1 CDS STMDT12_C07010 NC_016860.1 738961 740073 R COG0772 Bacterial cell division membrane protein; cell wall shape-determining protein complement(738961..740073) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246398.1 CDS STMDT12_C07020 NC_016860.1 740076 741977 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 complement(740076..741977) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246399.1 CDS STMDT12_C07030 NC_016860.1 742008 742475 R COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase complement(742008..742475) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246400.1 CDS STMDT12_C07040 NC_016860.1 742479 742796 R COG0799 Uncharacterized homolog of plant Iojap protein; hypothetical protein complement(742479..742796) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246401.1 CDS STMDT12_C07050 NC_016860.1 742985 743125 R hypothetical protein complement(742985..743125) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246402.1 CDS STMDT12_C07060 NC_016860.1 743125 743733 R COG0406 Fructose-2,6-bisphosphatase; alpha ribazole-5'-P phosphatase complement(743125..743733) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246403.1 CDS cobD NC_016860.1 743830 744924 D COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; threonine-phosphate decarboxylase 743830..744924 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246404.1 CDS nadD NC_016860.1 744899 745549 R COG1057 Nicotinic acid mononucleotide adenylyltransferase; nicotinic acid mononucleotide adenylyltransferase complement(744899..745549) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246405.1 CDS holA NC_016860.1 745542 746573 R COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta complement(745542..746573) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246406.1 CDS STMDT12_C07100 NC_016860.1 746573 747163 R COG2980 Rare lipoprotein B; LPS-assembly lipoprotein RlpB complement(746573..747163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246407.1 CDS leuS NC_016860.1 747178 749760 R COG0495 Leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(747178..749760) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246408.1 CDS STMDT12_C07120 NC_016860.1 750048 750338 D COG2721 Altronate dehydratase; putative hydrolase 750048..750338 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246409.1 CDS STMDT12_C07130 NC_016860.1 750361 751527 D COG2721 Altronate dehydratase; hydrolase, UxaA family protein 750361..751527 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246410.1 CDS STMDT12_C07140 NC_016860.1 751577 752530 D 2-keto-3-deoxygluconate permease 751577..752530 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246411.1 CDS STMDT12_C07150 NC_016860.1 752598 754526 D COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; putative sigma-54 dependent transcriptional regulator 752598..754526 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246412.1 CDS STMDT12_C07160 NC_016860.1 754619 755092 D COG0542 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein 754619..755092 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246413.1 CDS STMDT12_C07170 NC_016860.1 755131 756126 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(755131..756126) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246414.1 CDS STMDT12_C07180 NC_016860.1 756251 756958 D putative cytoplasmic protein 756251..756958 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246415.1 CDS STMDT12_C07190 NC_016860.1 756955 758388 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; putative molecular chaperone 756955..758388 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246416.1 CDS STMDT12_C07200 NC_016860.1 758400 759095 D putative cytoplasmic protein 758400..759095 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246417.1 CDS STMDT12_C07210 NC_016860.1 759092 760564 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; putative molecular chaperone 759092..760564 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246418.1 CDS STMDT12_C07220 NC_016860.1 760586 762265 R COG0443 Molecular chaperone; chaperone protein HscC complement(760586..762265) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246419.1 CDS STMDT12_C07230 NC_016860.1 762341 763579 R putative cytoplasmic protein complement(762341..763579) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246420.1 CDS rihA NC_016860.1 763611 764546 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 1 complement(763611..764546) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246421.1 CDS STMDT12_C07250 NC_016860.1 764663 765388 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate ABC transporter ATP-binding protein GltL complement(764663..765388) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246422.1 CDS STMDT12_C07260 NC_016860.1 765388 766062 R COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease protein GltK complement(765388..766062) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246423.1 CDS STMDT12_C07270 NC_016860.1 766062 766802 R COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease protein GltJ complement(766062..766802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246424.1 CDS STMDT12_C07280 NC_016860.1 766962 767870 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamate/aspartate ABC transporter substrate binding protein complement(766962..767870) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246425.1 CDS lnt NC_016860.1 768225 769763 R COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(768225..769763) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246426.1 CDS STMDT12_C07300 NC_016860.1 769783 770661 R COG4535 Putative Mg2+ and Co2+ transporter CorC; magnesium/cobalt efflux protein CorC complement(769783..770661) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246427.1 CDS STMDT12_C07310 NC_016860.1 770819 771292 R COG0319 Predicted metal-dependent hydrolase; putative metalloprotease complement(770819..771292) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246428.1 CDS STMDT12_C07320 NC_016860.1 771289 772335 R COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH-like ATP-binding protein complement(771289..772335) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246429.1 CDS STMDT12_C07330 NC_016860.1 772540 773964 R COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase complement(772540..773964) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246430.1 CDS ubiF NC_016860.1 774108 775283 D COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 774108..775283 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246431.1 CDS STMDT12_C07350 NC_016860.1 775350 775925 R putative inner membrane protein complement(775350..775925) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246432.1 CDS asnB NC_016860.1 776992 778656 R COG0367 Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase B complement(776992..778656) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246433.1 CDS STMDT12_C07370 NC_016860.1 778946 779698 R COG0647 Predicted sugar phosphatases of the HAD superfamily; UMP phosphatase complement(778946..779698) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246434.1 CDS STMDT12_C07380 NC_016860.1 779745 780965 R COG1940 Transcriptional regulator/sugar kinase; N-acetylglucosamine operon transcriptional repressor complement(779745..780965) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246435.1 CDS nagA NC_016860.1 780970 782124 R COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase complement(780970..782124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246436.1 CDS nagB NC_016860.1 782184 782984 R COG0363 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase; glucosamine-6-phosphate deaminase complement(782184..782984) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246437.1 CDS STMDT12_C07410 NC_016860.1 783311 785263 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; N-acetyl glucosamine-specific PTS system IIABC protein 783311..785263 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246438.1 CDS glnS NC_016860.1 785474 787141 D COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutaminyl-tRNA synthetase 785474..787141 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246439.1 CDS STMDT12_C07430 NC_016860.1 787587 788993 D outer membrane porin, OprD family protein 787587..788993 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246440.1 CDS STMDT12_C07440 NC_016860.1 789043 789375 D putative lipoprotein 789043..789375 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246441.1 CDS STMDT12_C07450 NC_016860.1 789424 790728 R COG0477 Permeases of the major facilitator superfamily; citrate-proton symporter complement(789424..790728) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246442.1 CDS STMDT12_C07460 NC_016860.1 790779 791918 R COG0247 Fe-S oxidoreductase; citrate utilization protein B complement(790779..791918) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246443.1 CDS STMDT12_C07470 NC_016860.1 791905 793308 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; tricarballylate dehydrogenase complement(791905..793308) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246444.1 CDS STMDT12_C07480 NC_016860.1 793406 794332 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(793406..794332) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246445.1 CDS fur NC_016860.1 794447 794899 R COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator complement(794447..794899) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246446.1 CDS STMDT12_C07500 NC_016860.1 795181 795711 R COG0716 Flavodoxins; flavodoxin FldA complement(795181..795711) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246447.1 CDS STMDT12_C07510 NC_016860.1 795862 796155 R LexA regulated protein complement(795862..796155) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246448.1 CDS STMDT12_C07520 NC_016860.1 796289 797059 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein complement(796289..797059) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246449.1 CDS STMDT12_C07530 NC_016860.1 797244 797786 D COG3057 Negative regulator of replication initiationR; replication initiation regulator SeqA 797244..797786 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246450.1 CDS STMDT12_C07540 NC_016860.1 797811 799451 D COG0033 Phosphoglucomutase; phosphoglucomutase 797811..799451 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246451.1 CDS STMDT12_C07550 NC_016860.1 799566 800051 R COG3467 Predicted flavin-nucleotide-binding protein; putative cytoplasmic protein complement(799566..800051) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246452.1 CDS potE NC_016860.1 800116 801435 R COG0531 Amino acid transporters; putrescine transporter complement(800116..801435) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246453.1 CDS STMDT12_C07570 NC_016860.1 801432 803630 R COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase complement(801432..803630) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246454.1 CDS STMDT12_C07580 NC_016860.1 804028 804141 D hypothetical protein 804028..804141 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246455.1 CDS STMDT12_C07590 NC_016860.1 804392 805069 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator KdpE complement(804392..805069) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246456.1 CDS STMDT12_C07600 NC_016860.1 805066 807750 R COG2205 Osmosensitive K+ channel histidine kinase; sensor kinase KdpD complement(805066..807750) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246457.1 CDS STMDT12_C07610 NC_016860.1 807747 808334 R COG2156 K+-transporting ATPase, c chain; potassium-transporting ATPase subunit C complement(807747..808334) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246458.1 CDS STMDT12_C07620 NC_016860.1 808340 810388 R COG2216 High-affinity K+ transport system, ATPase chain B; potassium-transporting ATPase subunit B complement(808340..810388) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246459.1 CDS STMDT12_C07630 NC_016860.1 810409 812088 R COG2060 K+-transporting ATPase, A chain; potassium-transporting ATPase subunit A complement(810409..812088) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246460.1 CDS STMDT12_C07640 NC_016860.1 812514 812720 D hypothetical protein 812514..812720 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246461.1 CDS STMDT12_C07650 NC_016860.1 812831 814252 D COG0415 Deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 812831..814252 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246462.1 CDS STMDT12_C07660 NC_016860.1 814291 815772 R COG3104 Dipeptide/tripeptide permease; inner membrane transport protein YbgH complement(814291..815772) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246463.1 CDS STMDT12_C07670 NC_016860.1 816101 816844 D COG0327 Uncharacterized conserved protein; putative hydrolase-oxidase 816101..816844 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246464.1 CDS STMDT12_C07680 NC_016860.1 816860 817516 D COG2049 Allophanate hydrolase subunit 1; hypothetical protein 816860..817516 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246465.1 CDS STMDT12_C07690 NC_016860.1 817510 818442 D COG1984 Allophanate hydrolase subunit 2; putative carboxylase 817510..818442 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246466.1 CDS STMDT12_C07700 NC_016860.1 818432 819166 D COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; LamB/YcsF family protein 818432..819166 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246467.1 CDS STMDT12_C07710 NC_016860.1 819276 819551 D COG3677 Transposase and inactivated derivatives; IS1 transposase 819276..819551 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246468.1 CDS STMDT12_C07720 NC_016860.1 819470 819973 D COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 819470..819973 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246469.1 CDS STMDT12_C07730 NC_016860.1 820062 820163 R hypothetical protein complement(820062..820163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246470.1 CDS STMDT12_C07740 NC_016860.1 820458 821024 D COG0582 Integrase; HbiF 820458..821024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246471.1 CDS STMDT12_C07750 NC_016860.1 821598 821819 D hypothetical protein 821598..821819 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246472.1 CDS STMDT12_C07760 NC_016860.1 821821 822561 D hypothetical protein 821821..822561 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246473.1 CDS STMDT12_C07770 NC_016860.1 822847 823998 D COG0562 UDP-galactopyranose mutase; UDP-galactopyranose mutase 822847..823998 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246474.1 CDS STMDT12_C07780 NC_016860.1 823998 824891 D COG1216 Predicted glycosyltransferases; putative glycosyl transferase 823998..824891 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246475.1 CDS STMDT12_C07790 NC_016860.1 824904 826037 D COG0438 Glycosyltransferase; galactosyltransferase 824904..826037 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246476.1 CDS STMDT12_C07800 NC_016860.1 826166 826936 D COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen ABC transporter permease protein 826166..826936 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246477.1 CDS STMDT12_C07810 NC_016860.1 826940 827650 D COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; putative polysaccharide ABC transporter ATP-binding protein 826940..827650 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246478.1 CDS STMDT12_C07820 NC_016860.1 827744 829522 D COG1216 Predicted glycosyltransferases; putative glycosyl transferase 827744..829522 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246479.1 CDS STMDT12_C07830 NC_016860.1 829715 830548 D COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyl transferase 829715..830548 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246480.1 CDS STMDT12_C07840 NC_016860.1 830552 832501 D COG5610 Predicted hydrolase (HAD superfamily); putative glycosyl transferase 830552..832501 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246481.1 CDS STMDT12_C07850 NC_016860.1 832569 832706 D hypothetical protein 832569..832706 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246482.1 CDS STMDT12_C07860 NC_016860.1 832755 833546 D COG0266 Formamidopyrimidine-DNA glycosylase; endonuclease VIII 832755..833546 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246483.1 CDS STMDT12_C07870 NC_016860.1 833601 834647 R COG3180 Putative ammonia monooxygenase; protein AbrB complement(833601..834647) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246484.1 CDS gltA NC_016860.1 834784 836067 R COG0372 Citrate synthase; type II citrate synthase complement(834784..836067) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246485.1 CDS sdhC NC_016860.1 836807 837211 D COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 836807..837211 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246486.1 CDS sdhD NC_016860.1 837205 837552 D COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase cytochrome b556 small membrane subunit 837205..837552 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246487.1 CDS sdhA NC_016860.1 837552 839318 D COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit 837552..839318 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246488.1 CDS sdhB NC_016860.1 839335 840051 D COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; succinate dehydrogenase iron-sulfur subunit 839335..840051 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246489.1 CDS sucA NC_016860.1 840575 843376 D COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; 2-oxoglutarate dehydrogenase E1 component 840575..843376 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246490.1 CDS STMDT12_C07940 NC_016860.1 843391 844599 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide succinyltransferase 843391..844599 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246491.1 CDS sucC NC_016860.1 844741 845907 D COG0045 Succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta 844741..845907 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246492.1 CDS STMDT12_C07960 NC_016860.1 845907 846776 D COG0074 Succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 845907..846776 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246493.1 CDS STMDT12_C07970 NC_016860.1 848359 849927 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d ubiquinol oxidase subunit I 848359..849927 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246494.1 CDS STMDT12_C07980 NC_016860.1 849943 851082 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II 849943..851082 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246495.1 CDS STMDT12_C07990 NC_016860.1 851097 851210 D COG4890 Predicted outer membrane lipoprotein; cyd operon protein YbgT 851097..851210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246496.1 CDS STMDT12_C08000 NC_016860.1 851210 851350 D hypothetical protein 851210..851350 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246497.1 CDS STMDT12_C08010 NC_016860.1 851347 851628 D COG3790 Predicted membrane protein; hypothetical protein 851347..851628 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246498.1 CDS STMDT12_C08020 NC_016860.1 851857 852261 D COG0824 Predicted thioesterase; acyl-CoA thioester hydrolase YbgC 851857..852261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246499.1 CDS STMDT12_C08030 NC_016860.1 852267 852950 D COG0811 Biopolymer transport proteins; colicin uptake protein TolQ 852267..852950 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246500.1 CDS STMDT12_C08040 NC_016860.1 852954 853382 D COG0848 Biopolymer transport protein; colicin uptake protein TolR 852954..853382 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246501.1 CDS tolA NC_016860.1 853447 854670 D COG3064 Membrane protein involved in colicin uptake; cell envelope integrity inner membrane protein TolA 853447..854670 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246502.1 CDS tolB NC_016860.1 854791 856086 D COG0823 Periplasmic component of the Tol biopolymer transport system; tol-pal system protein TolB 854791..856086 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246503.1 CDS STMDT12_C08070 NC_016860.1 856121 856645 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated outer membrane lipoprotein 856121..856645 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246504.1 CDS STMDT12_C08080 NC_016860.1 856655 857443 D COG1729 Uncharacterized protein conserved in bacteria; tol-pal system protein YbgF 856655..857443 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246505.1 CDS STMDT12_C08090 NC_016860.1 859063 860106 D COG0379 Quinolinate synthase; quinolinate synthetase 859063..860106 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246506.1 CDS STMDT12_C08100 NC_016860.1 860131 860850 D COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter PnuC 860131..860850 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246507.1 CDS STMDT12_C08110 NC_016860.1 860847 861785 R COG1230 Co/Zn/Cd efflux system component; zinc transporter ZitB complement(860847..861785) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246508.1 CDS STMDT12_C08120 NC_016860.1 861896 862282 R hypothetical protein complement(861896..862282) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246509.1 CDS STMDT12_C08130 NC_016860.1 862602 863654 D COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 862602..863654 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246510.1 CDS STMDT12_C08140 NC_016860.1 863748 864293 R COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region complement(863748..864293) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246511.1 CDS STMDT12_C08150 NC_016860.1 864308 865153 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase complement(864308..865153) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246512.1 CDS STMDT12_C08160 NC_016860.1 865283 866173 D COG0583 Transcriptional regulator; transcriptional regulator 865283..866173 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246513.1 CDS STMDT12_C08170 NC_016860.1 866174 867121 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(866174..867121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246514.1 CDS STMDT12_C08180 NC_016860.1 867380 868648 D COG0471 Di- and tricarboxylate transporters; anion transporter 867380..868648 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246515.1 CDS STMDT12_C08190 NC_016860.1 868737 868943 D COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma 868737..868943 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246516.1 CDS STMDT12_C08200 NC_016860.1 868959 870734 D COG5016 Pyruvate/oxaloacetate carboxyltransferase; oxaloacetate decarboxylase 868959..870734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246517.1 CDS STMDT12_C08210 NC_016860.1 870747 872048 D COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase subunit beta 870747..872048 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246518.1 CDS STMDT12_C08220 NC_016860.1 872167 872865 D COG1767 Triphosphoribosyl-dephospho-CoA synthetase; hypothetical protein 872167..872865 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246519.1 CDS STMDT12_C08230 NC_016860.1 873341 874324 D COG0609 ABC-type Fe3+-siderophore transport system, permease component; putative ABC transporter substrate binding protein 873341..874324 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246520.1 CDS STMDT12_C08240 NC_016860.1 874324 875100 D COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; ABC transporter ATP-binding protein 874324..875100 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246521.1 CDS gpmA NC_016860.1 875191 875943 R COG0588 Phosphoglycerate mutase 1; phosphoglycerate mutase complement(875191..875943) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246522.1 CDS galM NC_016860.1 876167 877207 R COG2017 Galactose mutarotase and related enzymes; aldose 1-epimerase complement(876167..877207) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246523.1 CDS STMDT12_C08270 NC_016860.1 877201 878349 R COG0153 Galactokinase; galactokinase complement(877201..878349) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246524.1 CDS STMDT12_C08280 NC_016860.1 878352 879398 R COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase complement(878352..879398) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246525.1 CDS STMDT12_C08290 NC_016860.1 879409 880425 R COG1087 UDP-glucose 4-epimerase; UDP-galactose-4-epimerase complement(879409..880425) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246526.1 CDS STMDT12_C08300 NC_016860.1 880648 881556 R COG4714 Uncharacterized membrane-anchored protein conserved in bacteria; putative inner membrane protein complement(880648..881556) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246527.1 CDS STMDT12_C08310 NC_016860.1 881727 883202 R COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; putative molybdenum ABC transporter ATP-binding protein ModF complement(881727..883202) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246528.1 CDS STMDT12_C08320 NC_016860.1 883270 884058 R COG2005 N-terminal domain of molybdenum-binding protein; DNA-binding transcriptional regulator ModE complement(883270..884058) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246529.1 CDS STMDT12_C08330 NC_016860.1 884187 884336 D hypothetical protein 884187..884336 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246530.1 CDS modA NC_016860.1 884503 885276 D COG0725 ABC-type molybdate transport system, periplasmic component; molybdate ABC transporter substrate binding protein 884503..885276 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246531.1 CDS modB NC_016860.1 885276 885965 D COG4149 ABC-type molybdate transport system, permease component; molybdate ABC transporter permease 885276..885965 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246532.1 CDS modC NC_016860.1 885968 887026 D COG4148 ABC-type molybdate transport system, ATPase component; molybdate ABC transporter ATP-binding protein 885968..887026 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246533.1 CDS STMDT12_C08370 NC_016860.1 887027 887845 R COG0561 Predicted hydrolases of the HAD superfamily; phosphotransferase complement(887027..887845) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246534.1 CDS STMDT12_C08380 NC_016860.1 888009 889004 D COG2706 3-carboxymuconate cyclase; 6-phosphogluconolactonase 888009..889004 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246535.1 CDS STMDT12_C08390 NC_016860.1 889148 890431 R COG4677 Pectin methylesterase; putative pectinesterase complement(889148..890431) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246536.1 CDS STMDT12_C08400 NC_016860.1 890669 891892 D COG1228 Imidazolonepropionase and related amidohydrolases; imidazolonepropionase 890669..891892 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246537.1 CDS STMDT12_C08410 NC_016860.1 891889 892830 D COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; formimidoylglutamase 891889..892830 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246538.1 CDS STMDT12_C08420 NC_016860.1 892875 893600 D COG2188 Transcriptional regulators; histidine utilization repressor 892875..893600 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246539.1 CDS STMDT12_C08430 NC_016860.1 893797 894942 D putative frameshift mutation; urocanate hydratase 893797..894942 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246540.1 CDS STMDT12_C08440 NC_016860.1 894678 895481 D putative frameshift mutation; urocanate hydratase 894678..895481 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246541.1 CDS STMDT12_C08450 NC_016860.1 895483 897003 D COG2986 Histidine ammonia-lyase; histidine ammonia-lyase 895483..897003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246542.1 CDS STMDT12_C08460 NC_016860.1 897088 897564 R COG1881 Phospholipid-binding protein; putative kinase inhibitor protein complement(897088..897564) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246543.1 CDS STMDT12_C08470 NC_016860.1 897622 898911 R COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(897622..898911) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246544.1 CDS STMDT12_C08480 NC_016860.1 898998 900038 D COG0502 Biotin synthase and related enzymes; biotin synthase 898998..900038 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246545.1 CDS STMDT12_C08490 NC_016860.1 900035 901192 D COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 900035..901192 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246546.1 CDS STMDT12_C08500 NC_016860.1 901176 901931 D COG0500 SAM-dependent methyltransferases; biotin biosynthesis protein BioC 901176..901931 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246547.1 CDS bioD NC_016860.1 901924 902610 D COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 901924..902610 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246548.1 CDS uvrB NC_016860.1 903261 905282 D COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B 903261..905282 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246549.1 CDS STMDT12_C08530 NC_016860.1 905772 908069 D COG4886 Leucine-rich repeat (LRR) protein; hypothetical protein 905772..908069 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246550.1 CDS STMDT12_C08540 NC_016860.1 908161 909069 R COG0391 Uncharacterized conserved protein; hypothetical protein complement(908161..909069) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246551.1 CDS moaA NC_016860.1 909466 910455 D COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 909466..910455 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246552.1 CDS STMDT12_C08560 NC_016860.1 910477 910989 D COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein B 910477..910989 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246553.1 CDS moaC NC_016860.1 910992 911477 D COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 910992..911477 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246554.1 CDS moaD NC_016860.1 911470 911715 D COG1977 Molybdopterin converting factor, small subunit; molybdopterin synthase small subunit 911470..911715 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246555.1 CDS moaE NC_016860.1 911717 912169 D COG0314 Molybdopterin converting factor, large subunit; molybdopterin guanine dinucleotide biosynthesis protein MoaE 911717..912169 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246556.1 CDS STMDT12_C08600 NC_016860.1 912217 912921 D COG0670 Integral membrane protein, interacts with FtsH; inner membrane protein YbhL 912217..912921 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246557.1 CDS STMDT12_C08610 NC_016860.1 913068 913775 D COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 913068..913775 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246558.1 CDS STMDT12_C08620 NC_016860.1 913808 914407 D putative inner membrane protein 913808..914407 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246559.1 CDS STMDT12_C08630 NC_016860.1 914415 914969 D putative inner membrane protein 914415..914969 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246560.1 CDS STMDT12_C08640 NC_016860.1 914980 915483 R COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase complement(914980..915483) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246561.1 CDS STMDT12_C08650 NC_016860.1 915402 915677 R COG3677 Transposase and inactivated derivatives; IS1 transposase complement(915402..915677) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246562.1 CDS STMDT12_C08660 NC_016860.1 915754 916716 R COG0392 Predicted integral membrane protein; hypothetical protein complement(915754..916716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246563.1 CDS STMDT12_C08670 NC_016860.1 916716 917957 R COG1502 Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes; cardiolipin synthase 2 complement(916716..917957) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246564.1 CDS STMDT12_C08680 NC_016860.1 917954 918712 R COG3568 Metal-dependent hydrolase; endonuclease/exonuclease/phosphatase family protein complement(917954..918712) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246565.1 CDS STMDT12_C08690 NC_016860.1 918845 919255 D hypothetical protein 918845..919255 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246566.1 CDS STMDT12_C08700 NC_016860.1 919217 920323 R COG0842 ABC-type multidrug transport system, permease component; ABC transporter permease complement(919217..920323) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246567.1 CDS STMDT12_C08710 NC_016860.1 920439 921569 R COG0842 ABC-type multidrug transport system, permease component; putative inner membrane protein complement(920439..921569) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246568.1 CDS STMDT12_C08720 NC_016860.1 921562 923298 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein complement(921562..923298) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246569.1 CDS STMDT12_C08730 NC_016860.1 923291 924286 R COG0845 Membrane-fusion protein; hypothetical protein complement(923291..924286) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246570.1 CDS STMDT12_C08740 NC_016860.1 924286 924960 R COG1309 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(924286..924960) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246571.1 CDS STMDT12_C08750 NC_016860.1 925190 926554 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE 925190..926554 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246572.1 CDS dinG NC_016860.1 926762 928906 D COG1199 Rad3-related DNA helicases; ATP-dependent DNA helicase DinG 926762..928906 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246573.1 CDS STMDT12_C08770 NC_016860.1 928936 929910 D COG0547 Anthranilate phosphoribosyltransferase; glycosyl transferase family protein 928936..929910 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246574.1 CDS STMDT12_C08780 NC_016860.1 930066 930326 R hypothetical protein complement(930066..930326) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246575.1 CDS STMDT12_C08790 NC_016860.1 930611 930877 R COG1734 DnaK suppressor protein; hypothetical protein complement(930611..930877) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246576.1 CDS STMDT12_C08800 NC_016860.1 931082 932008 D COG3129 Predicted SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 931082..932008 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246577.1 CDS STMDT12_C08810 NC_016860.1 932005 934227 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(932005..934227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246578.1 CDS glnQ NC_016860.1 934346 935068 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein complement(934346..935068) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246579.1 CDS glnP NC_016860.1 935065 935724 R COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter permease complement(935065..935724) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246580.1 CDS glnH NC_016860.1 935868 936614 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter substrate binding protein complement(935868..936614) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246581.1 CDS dps NC_016860.1 937091 937594 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); DNA protection during starvation protein complement(937091..937594) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246582.1 CDS rhtA NC_016860.1 937897 938784 R COG5006 Predicted permease, DMT superfamily; threonine/serine transporter RhtA complement(937897..938784) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246583.1 CDS ompX NC_016860.1 939138 939653 D COG3637 Opacity protein and related surface antigens; outer membrane protein X 939138..939653 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246584.1 CDS STMDT12_C08880 NC_016860.1 939716 941296 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein complement(939716..941296) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246585.1 CDS STMDT12_C08890 NC_016860.1 941561 941689 R hypothetical protein complement(941561..941689) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246586.1 CDS STMDT12_C08900 NC_016860.1 941875 942348 D COG1321 Mn-dependent transcriptional regulator; manganese transport regulator MntR 941875..942348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246587.1 CDS STMDT12_C08910 NC_016860.1 942345 943457 D COG0471 Di- and tricarboxylate transporters; putative transport protein 942345..943457 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246588.1 CDS STMDT12_C08920 NC_016860.1 943501 944421 R COG1376 Uncharacterized protein conserved in bacteria; hypothetical protein complement(943501..944421) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246589.1 CDS STMDT12_C08930 NC_016860.1 944664 946232 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 944664..946232 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246590.1 CDS STMDT12_C08940 NC_016860.1 946688 947584 D putative inner membrane protein 946688..947584 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246591.1 CDS STMDT12_C08950 NC_016860.1 947613 948143 R COG0561 Predicted hydrolases of the HAD superfamily; putative hydrolase complement(947613..948143) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246592.1 CDS STMDT12_C08960 NC_016860.1 948537 949802 R hypothetical protein complement(948537..949802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246593.1 CDS STMDT12_C08970 NC_016860.1 950064 950873 D COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase SupH 950064..950873 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246594.1 CDS STMDT12_C08980 NC_016860.1 950951 953383 R COG1882 Pyruvate-formate lyase; putative pyruvate formate lyase complement(950951..953383) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246595.1 CDS STMDT12_C08990 NC_016860.1 953389 954288 R COG1180 Pyruvate-formate lyase-activating enzyme; hypothetical protein complement(953389..954288) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246596.1 CDS STMDT12_C09000 NC_016860.1 954566 955315 R COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; molybdopterin biosynthesis protein MoeB complement(954566..955315) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246597.1 CDS STMDT12_C09010 NC_016860.1 955315 956550 R COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein MoeA complement(955315..956550) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246598.1 CDS STMDT12_C09020 NC_016860.1 956753 957694 D COG1446 Asparaginase; L-asparaginase 956753..957694 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246599.1 CDS STMDT12_C09030 NC_016860.1 957705 959576 D COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; glutathione ABC transporter ATP-binding protein 957705..959576 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246600.1 CDS STMDT12_C09040 NC_016860.1 959609 961147 D COG0747 ABC-type dipeptide transport system, periplasmic component; putative ABC transporter substrate binding protein 959609..961147 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246601.1 CDS STMDT12_C09050 NC_016860.1 961208 962128 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; ABC transporter permease protein YddR 961208..962128 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246602.1 CDS STMDT12_C09060 NC_016860.1 962131 963042 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease protein GsiD 962131..963042 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246603.1 CDS STMDT12_C09070 NC_016860.1 963133 964458 R COG0621 2-methylthioadenine synthetase; hypothetical protein complement(963133..964458) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246604.1 CDS bssR NC_016860.1 964689 965072 D biofilm formation regulatory protein BssR 964689..965072 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246605.1 CDS STMDT12_C09090 NC_016860.1 965785 966300 D COG2301 Citrate lyase beta subunit; putative cytoplasmic protein 965785..966300 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246606.1 CDS STMDT12_C09100 NC_016860.1 966323 967072 D COG2086 Electron transfer flavoprotein, beta subunit; putative electron transfer flavoprotein beta subunit 966323..967072 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246607.1 CDS STMDT12_C09110 NC_016860.1 967083 968030 D COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 967083..968030 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246608.1 CDS STMDT12_C09120 NC_016860.1 968063 968260 D hypothetical protein 968063..968260 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246609.1 CDS STMDT12_C09130 NC_016860.1 968324 969487 D COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 968324..969487 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246610.1 CDS STMDT12_C09140 NC_016860.1 969936 971621 D COG0644 Dehydrogenases (flavoproteins); electron transfer flavoprotein-ubiquinone oxidoreductase 969936..971621 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246611.1 CDS STMDT12_C09150 NC_016860.1 971627 972517 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(971627..972517) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246612.1 CDS STMDT12_C09160 NC_016860.1 972782 973207 R COG2610 H+/gluconate symporter and related permeases; putative inner membrane protein complement(972782..973207) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246613.1 CDS STMDT12_C09170 NC_016860.1 973554 974234 D COG3677 Transposase and inactivated derivatives; putative dehydrogenase 973554..974234 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246614.1 CDS STMDT12_C09180 NC_016860.1 974231 974857 R COG0625 Glutathione S-transferase; putative glutathione S-transferase complement(974231..974857) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246615.1 CDS STMDT12_C09190 NC_016860.1 975101 976303 D COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase 975101..976303 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246616.1 CDS STMDT12_C09200 NC_016860.1 976348 977106 R COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor DeoR complement(976348..977106) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246617.1 CDS STMDT12_C09210 NC_016860.1 977178 977852 R COG0671 Membrane-associated phospholipid phosphatase; undecaprenyl pyrophosphate phosphatase complement(977178..977852) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246618.1 CDS STMDT12_C09220 NC_016860.1 978099 979331 D COG0477 Permeases of the major facilitator superfamily; multidrug translocase 978099..979331 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246619.1 CDS STMDT12_C09230 NC_016860.1 979385 980200 R COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein complement(979385..980200) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246620.1 CDS STMDT12_C09240 NC_016860.1 980197 981408 R COG0477 Permeases of the major facilitator superfamily; putative transport protein/regulator complement(980197..981408) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246621.1 CDS STMDT12_C09250 NC_016860.1 981576 982196 D COG3226 Uncharacterized protein conserved in bacteria; putative regulatory protein 981576..982196 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246622.1 CDS STMDT12_C09260 NC_016860.1 982313 983998 R COG2985 Predicted permease; hypothetical protein complement(982313..983998) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246623.1 CDS STMDT12_C09270 NC_016860.1 984269 984646 D hypothetical protein 984269..984646 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246624.1 CDS grxA NC_016860.1 984678 984941 R COG0695 Glutaredoxin and related proteins; glutaredoxin complement(984678..984941) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246625.1 CDS STMDT12_C09290 NC_016860.1 985111 985401 D hypothetical protein 985111..985401 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246626.1 CDS STMDT12_C09300 NC_016860.1 985385 985810 D COG0778 Nitroreductase; nitroreductase A 985385..985810 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246627.1 CDS STMDT12_C09310 NC_016860.1 985821 986324 R COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase complement(985821..986324) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246628.1 CDS STMDT12_C09320 NC_016860.1 986243 986518 R COG3677 Transposase and inactivated derivatives; IS1 transposase complement(986243..986518) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246629.1 CDS STMDT12_C09330 NC_016860.1 986609 986884 D COG0778 Nitroreductase; nitroreductase A 986609..986884 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246630.1 CDS STMDT12_C09340 NC_016860.1 986942 987844 D COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); ribosomal protein S6 modification protein 986942..987844 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246631.1 CDS STMDT12_C09350 NC_016860.1 987941 988417 D putative cytoplasmic protein 987941..988417 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246632.1 CDS STMDT12_C09360 NC_016860.1 988766 989878 D COG0687 Spermidine/putrescine-binding periplasmic protein; putrescine ABC transporter dubstrate binding protein 988766..989878 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246633.1 CDS potG NC_016860.1 989966 991099 D COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine ABC transporter ATP-binding protein 989966..991099 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246634.1 CDS STMDT12_C09380 NC_016860.1 991109 992062 D COG1176 ABC-type spermidine/putrescine transport system, permease component I; putrescine ABC transporter permease protein 991109..992062 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246635.1 CDS STMDT12_C09390 NC_016860.1 992059 992904 D COG1177 ABC-type spermidine/putrescine transport system, permease component II; putrescine ABC transporter permease protein 992059..992904 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246636.1 CDS STMDT12_C09400 NC_016860.1 992978 993451 D hypothetical protein 992978..993451 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246637.1 CDS rumB NC_016860.1 993494 994624 D COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase 993494..994624 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246638.1 CDS STMDT12_C09420 NC_016860.1 994907 996250 D COG3037 Uncharacterized protein conserved in bacteria; ascorbate-specific PTS system IIC protein 994907..996250 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246639.1 CDS STMDT12_C09430 NC_016860.1 996280 996600 D COG3414 Phosphotransferase system, galactitol-specific IIB component; putative PTS system IIB protein 996280..996600 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246640.1 CDS STMDT12_C09440 NC_016860.1 996610 998097 D COG3119 Arylsulfatase A and related enzymes; putative sulfatase 996610..998097 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246641.1 CDS STMDT12_C09450 NC_016860.1 998316 999047 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter substrate binding protein ArtJ complement(998316..999047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246642.1 CDS artM NC_016860.1 999284 999952 R COG4160 ABC-type arginine/histidine transport system, permease component; arginine ABC transporter permease protein ArtM complement(999284..999952) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246643.1 CDS STMDT12_C09470 NC_016860.1 999952 1000668 R COG4215 ABC-type arginine transport system, permease component; arginine ABC transporter permease protein ArtQ complement(999952..1000668) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246644.1 CDS STMDT12_C09480 NC_016860.1 1000675 1001406 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter substrate binding protein ArtI complement(1000675..1001406) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246645.1 CDS artP NC_016860.1 1001424 1002152 R COG4161 ABC-type arginine transport system, ATPase component; arginine ABC transporter ATP-binding protein complement(1001424..1002152) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246646.1 CDS STMDT12_C09500 NC_016860.1 1002382 1002897 R putative lipoprotein complement(1002382..1002897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246647.1 CDS STMDT12_C09510 NC_016860.1 1003025 1003348 D COG0393 Uncharacterized conserved protein; hypothetical protein 1003025..1003348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246648.1 CDS STMDT12_C09520 NC_016860.1 1003345 1004175 D COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase AmiD 1003345..1004175 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246649.1 CDS STMDT12_C09530 NC_016860.1 1004172 1005185 R COG0451 Nucleoside-diphosphate-sugar epimerases; NAD dependent epimerase/dehydratase family protein complement(1004172..1005185) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246650.1 CDS STMDT12_C09540 NC_016860.1 1005281 1006714 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(1005281..1006714) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246651.1 CDS STMDT12_C09550 NC_016860.1 1006725 1007726 R COG2008 Threonine aldolase; L-threonine aldolase complement(1006725..1007726) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246652.1 CDS STMDT12_C09560 NC_016860.1 1007765 1009483 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate dehydrogenase complement(1007765..1009483) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246653.1 CDS STMDT12_C09570 NC_016860.1 1009641 1010609 R COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; HCP oxidoreductase complement(1009641..1010609) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246654.1 CDS STMDT12_C09580 NC_016860.1 1010621 1012273 R COG1151 6Fe-6S prismane cluster-containing protein; hydroxylamine reductase complement(1010621..1012273) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246655.1 CDS STMDT12_C09590 NC_016860.1 1012417 1013316 R COG2431 Predicted membrane protein; hypothetical protein complement(1012417..1013316) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246656.1 CDS STMDT12_C09600 NC_016860.1 1013518 1015176 D hypothetical protein 1013518..1015176 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246657.1 CDS STMDT12_C09610 NC_016860.1 1015173 1016123 R COG2990 Uncharacterized protein conserved in bacteria; VirK-like protein complement(1015173..1016123) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246658.1 CDS STMDT12_C09620 NC_016860.1 1016269 1017387 D COG0845 Membrane-fusion protein; macrolide transporter subunit MacA 1016269..1017387 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246659.1 CDS STMDT12_C09630 NC_016860.1 1017384 1019330 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; macrolide ABC transporter ATP-binding/permease protein 1017384..1019330 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246660.1 CDS STMDT12_C09640 NC_016860.1 1019460 1019681 R COG1278 Cold shock proteins; cold shock protein CspD complement(1019460..1019681) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246661.1 CDS clpS NC_016860.1 1020005 1020325 D COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adaptor protein ClpS 1020005..1020325 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246662.1 CDS clpA NC_016860.1 1020356 1022632 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 1020356..1022632 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246663.1 CDS STMDT12_C09670 NC_016860.1 1022824 1023282 D COG1943 Transposase and inactivated derivatives; IS200 transposase 1022824..1023282 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246664.1 CDS STMDT12_C09680 NC_016860.1 1023745 1024428 R COG2801 Transposase and inactivated derivatives; hypothetical protein complement(1023745..1024428) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246665.1 CDS STMDT12_C09690 NC_016860.1 1024599 1025000 R ISPsy11 transposase OrfA complement(1024599..1025000) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246666.1 CDS STMDT12_C09700 NC_016860.1 1025337 1026014 R COG1335 Amidases related to nicotinamidase; SlsA complement(1025337..1026014) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246667.1 CDS STMDT12_C09710 NC_016860.1 1026034 1026894 R COG1741 Pirin-related protein; putative cytoplasmic protein complement(1026034..1026894) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246668.1 CDS STMDT12_C09720 NC_016860.1 1027003 1027914 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 1027003..1027914 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246669.1 CDS infA NC_016860.1 1028005 1028223 R COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 complement(1028005..1028223) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246670.1 CDS aat NC_016860.1 1028535 1029239 R COG2360 Leu/Phe-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase complement(1028535..1029239) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246671.1 CDS STMDT12_C09750 NC_016860.1 1029284 1031005 R COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; cysteine/glutathione ABC transporter permease/ATP-binding protein complement(1029284..1031005) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246672.1 CDS STMDT12_C09760 NC_016860.1 1031006 1032772 R COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; cysteine/glutathione ABC transporter permease/ATP-binding protein complement(1031006..1032772) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246673.1 CDS STMDT12_C09770 NC_016860.1 1032886 1033854 R COG0492 Thioredoxin reductase; thioredoxin reductase complement(1032886..1033854) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246674.1 CDS STMDT12_C09780 NC_016860.1 1034400 1034894 D COG1522 Transcriptional regulators; leucine-responsive transcriptional regulator 1034400..1034894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246675.1 CDS STMDT12_C09790 NC_016860.1 1034972 1039084 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase FtsK 1034972..1039084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246676.1 CDS lolA NC_016860.1 1039227 1039838 D COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein 1039227..1039838 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246677.1 CDS STMDT12_C09810 NC_016860.1 1039848 1041191 D COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination protein RarA 1039848..1041191 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246678.1 CDS STMDT12_C09820 NC_016860.1 1041450 1042742 D COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase 1041450..1042742 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246679.1 CDS STMDT12_C09830 NC_016860.1 1042979 1045423 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a 1042979..1045423 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246680.1 CDS STMDT12_C09840 NC_016860.1 1045434 1046051 D COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase subunit B 1045434..1046051 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246681.1 CDS STMDT12_C09850 NC_016860.1 1046053 1046916 D COG3302 DMSO reductase anchor subunit; anaerobic dimethyl sulfoxide reductase chain C 1046053..1046916 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246682.1 CDS STMDT12_C09860 NC_016860.1 1047266 1048414 D COG0477 Permeases of the major facilitator superfamily; putative major facilitator family transporter 1047266..1048414 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246683.1 CDS STMDT12_C09870 NC_016860.1 1048632 1050053 D COG0531 Amino acid transporters; putative transport protein 1048632..1050053 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246684.1 CDS pflA NC_016860.1 1050346 1051143 R COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase-activating enzyme 1 complement(1050346..1051143) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246685.1 CDS STMDT12_C09890 NC_016860.1 1051719 1052678 D hypothetical protein 1051719..1052678 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246686.1 CDS STMDT12_C09900 NC_016860.1 1052754 1055036 R COG1882 Pyruvate-formate lyase; formate acetyltransferase complement(1052754..1055036) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246687.1 CDS STMDT12_C09910 NC_016860.1 1055096 1055953 R COG2116 Formate/nitrite family of transporters; formate transporter complement(1055096..1055953) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246688.1 CDS STMDT12_C09920 NC_016860.1 1056358 1058118 R COG1944 Uncharacterized conserved protein; hypothetical protein complement(1056358..1058118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246689.1 CDS STMDT12_C09930 NC_016860.1 1058255 1058947 D COG2323 Predicted membrane protein; hypothetical protein 1058255..1058947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246690.1 CDS STMDT12_C09940 NC_016860.1 1059133 1060221 D COG1932 Phosphoserine aminotransferase; phosphoserine aminotransferase 1059133..1060221 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246691.1 CDS STMDT12_C09950 NC_016860.1 1060292 1061575 D COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1060292..1061575 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246692.1 CDS STMDT12_C09960 NC_016860.1 1061718 1062479 D COG0501 Zn-dependent protease with chaperone function; putative Zn-dependent protease 1061718..1062479 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246693.1 CDS cmk NC_016860.1 1062652 1063335 D COG0283 Cytidylate kinase; cytidylate kinase 1062652..1063335 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246694.1 CDS rpsA NC_016860.1 1063449 1065122 D COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1063449..1065122 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246695.1 CDS ihfB NC_016860.1 1065278 1065562 D COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit beta 1065278..1065562 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246696.1 CDS STMDT12_C10000 NC_016860.1 1065792 1068056 D COG0658 Predicted membrane metal-binding protein; hypothetical protein 1065792..1068056 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246697.1 CDS STMDT12_C10010 NC_016860.1 1068093 1069841 D COG1132 ABC-type multidrug transport system, ATPase and permease components; lipid ABC transporter ATP-binding/permease protein 1068093..1069841 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246698.1 CDS lpxK NC_016860.1 1069838 1070815 D COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 1069838..1070815 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246699.1 CDS STMDT12_C10030 NC_016860.1 1070859 1072091 D COG3214 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 1070859..1072091 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246700.1 CDS STMDT12_C10040 NC_016860.1 1072143 1072325 D COG2835 Uncharacterized conserved protein; hypothetical protein 1072143..1072325 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246701.1 CDS STMDT12_C10050 NC_016860.1 1072322 1073068 D COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 1072322..1073068 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246702.1 CDS STMDT12_C10060 NC_016860.1 1073279 1074172 D hypothetical protein 1073279..1074172 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246703.1 CDS STMDT12_C10070 NC_016860.1 1074152 1074928 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(1074152..1074928) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246704.1 CDS STMDT12_C10080 NC_016860.1 1075064 1075867 D COG0500 SAM-dependent methyltransferases; putative metallothionein SmtA 1075064..1075867 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246705.1 CDS STMDT12_C10090 NC_016860.1 1075860 1077182 D COG3006 Uncharacterized protein involved in chromosome partitioning; condesin subunit F 1075860..1077182 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246706.1 CDS STMDT12_C10100 NC_016860.1 1077163 1077867 D COG3095 Uncharacterized protein involved in chromosome partitioning; condesin subunit E 1077163..1077867 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246707.1 CDS mukB NC_016860.1 1077867 1082333 D COG3096 Uncharacterized protein involved in chromosome partitioning; cell division protein MukB 1077867..1082333 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246708.1 CDS STMDT12_C10120 NC_016860.1 1082678 1084519 D COG2989 Uncharacterized protein conserved in bacteria; hypothetical protein 1082678..1084519 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246709.1 CDS STMDT12_C10130 NC_016860.1 1084779 1085327 D COG3108 Uncharacterized protein conserved in bacteria; hypothetical protein 1084779..1085327 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246710.1 CDS STMDT12_C10140 NC_016860.1 1085355 1086002 D COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase 1085355..1086002 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246711.1 CDS STMDT12_C10150 NC_016860.1 1086064 1087254 R COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase complement(1086064..1087254) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246712.1 CDS STMDT12_C10160 NC_016860.1 1087439 1088530 R COG3203 Outer membrane protein (porin); outer membrane protein F complement(1087439..1088530) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246713.1 CDS asnC NC_016860.1 1089137 1090537 R COG0017 Aspartyl/asparaginyl-tRNA synthetases; asparaginyl-tRNA synthetase complement(1089137..1090537) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246714.1 CDS STMDT12_C10180 NC_016860.1 1090738 1091199 R COG1522 Transcriptional regulators; AsnC family transcriptional regulator complement(1090738..1091199) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246715.1 CDS STMDT12_C10190 NC_016860.1 1091196 1091429 R hypothetical protein complement(1091196..1091429) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246716.1 CDS STMDT12_C10200 NC_016860.1 1091516 1092730 D COG1171 Threonine dehydratase; diaminopropionate ammonia-lyase 1091516..1092730 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246717.1 CDS STMDT12_C10210 NC_016860.1 1092975 1094411 D COG1115 Na+/alanine symporter; putative transcriptional regulator 1092975..1094411 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246718.1 CDS STMDT12_C10220 NC_016860.1 1094489 1095691 R COG1488 Nicotinic acid phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(1094489..1095691) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246719.1 CDS STMDT12_C10230 NC_016860.1 1095886 1097178 R COG0582 Integrase; integrase complement(1095886..1097178) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246720.1 CDS STMDT12_C10240 NC_016860.1 1097223 1097471 R excisionase complement(1097223..1097471) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246721.1 CDS STMDT12_C10250 NC_016860.1 1097512 1097751 R putative cytoplasmic protein complement(1097512..1097751) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246722.1 CDS STMDT12_C10260 NC_016860.1 1097794 1098903 R Gifsy-1 prophage protein complement(1097794..1098903) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246723.1 CDS STMDT12_C10270 NC_016860.1 1098914 1101841 R Gifsy-1 prophage RecE complement(1098914..1101841) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246724.1 CDS STMDT12_C10280 NC_016860.1 1101968 1102267 R hypothetical protein complement(1101968..1102267) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246725.1 CDS STMDT12_C10290 NC_016860.1 1102289 1102447 R hypothetical protein complement(1102289..1102447) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246726.1 CDS STMDT12_C10300 NC_016860.1 1102440 1102556 R hypothetical protein complement(1102440..1102556) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246727.1 CDS STMDT12_C10310 NC_016860.1 1102750 1103160 R COG1396 Predicted transcriptional regulators; regulatory protein complement(1102750..1103160) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246728.1 CDS STMDT12_C10320 NC_016860.1 1103280 1103519 D hypothetical protein 1103280..1103519 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246729.1 CDS STMDT12_C10330 NC_016860.1 1103710 1103859 D Gifsy-1 prophage cI protein 1103710..1103859 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246730.1 CDS STMDT12_C10340 NC_016860.1 1103944 1104927 D Gifsy-1 prophage PrpO 1103944..1104927 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246731.1 CDS STMDT12_C10350 NC_016860.1 1104930 1105679 D COG1484 DNA replication protein; putative replication protein 1104930..1105679 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246732.1 CDS STMDT12_C10360 NC_016860.1 1105690 1106037 D hypothetical protein 1105690..1106037 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246733.1 CDS STMDT12_C10370 NC_016860.1 1106034 1106345 D hypothetical protein 1106034..1106345 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246734.1 CDS STMDT12_C10380 NC_016860.1 1106444 1106713 D hypothetical protein 1106444..1106713 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246735.1 CDS STMDT12_C10390 NC_016860.1 1107005 1107238 D COG1344 Flagellin and related hook-associated proteins; hypothetical protein 1107005..1107238 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246736.1 CDS STMDT12_C10400 NC_016860.1 1107654 1108256 D hypothetical protein 1107654..1108256 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246737.1 CDS STMDT12_C10410 NC_016860.1 1108256 1108462 D hypothetical protein 1108256..1108462 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246738.1 CDS STMDT12_C10420 NC_016860.1 1108465 1109076 D bacteriophage Lambda NinG protein 1108465..1109076 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246739.1 CDS STMDT12_C10430 NC_016860.1 1109209 1110006 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; antitermination protein Q 1109209..1110006 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246740.1 CDS STMDT12_C10440 NC_016860.1 1110172 1110390 D hypothetical protein 1110172..1110390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246741.1 CDS STMDT12_C10450 NC_016860.1 1110825 1111274 R hypothetical protein complement(1110825..1111274) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246742.1 CDS STMDT12_C10460 NC_016860.1 1111635 1112321 R hypothetical protein complement(1111635..1112321) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246743.1 CDS STMDT12_C10470 NC_016860.1 1112591 1112926 D phage holin, lambda family protein 1112591..1112926 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246744.1 CDS STMDT12_C10480 NC_016860.1 1112913 1113362 D COG3772 Phage-related lysozyme (muraminidase); morphogenesis-like protein 1112913..1113362 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246745.1 CDS STMDT12_C10490 NC_016860.1 1113380 1113859 D putative phage lysozyme 1113380..1113859 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246746.1 CDS STMDT12_C10500 NC_016860.1 1114067 1114600 D Gifsy-2 prophage protein 1114067..1114600 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246747.1 CDS STMDT12_C10510 NC_016860.1 1114662 1116695 D COG5525 Bacteriophage tail assembly protein; phage terminase large subunit 1114662..1116695 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246748.1 CDS STMDT12_C10520 NC_016860.1 1116692 1116898 D hypothetical protein 1116692..1116898 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246749.1 CDS STMDT12_C10530 NC_016860.1 1116895 1118442 D COG5511 Bacteriophage capsid protein; phage portal protein, lambda family 1116895..1118442 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246750.1 CDS STMDT12_C10540 NC_016860.1 1118393 1120447 D COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease 1118393..1120447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246751.1 CDS STMDT12_C10550 NC_016860.1 1120538 1120861 D COG5471 Uncharacterized conserved protein; putative RecA/RadA recombinase 1120538..1120861 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246752.1 CDS STMDT12_C10560 NC_016860.1 1120854 1121153 D putative prophage protein 1120854..1121153 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246753.1 CDS STMDT12_C10570 NC_016860.1 1121134 1121700 D phage minor tail protein Z 1121134..1121700 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246754.1 CDS STMDT12_C10580 NC_016860.1 1121697 1122098 D phage minor tail protein U 1121697..1122098 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246755.1 CDS STMDT12_C10590 NC_016860.1 1122110 1122859 D COG5492 Bacterial surface proteins containing Ig-like domains; putative major tail protein 1122110..1122859 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246756.1 CDS STMDT12_C10600 NC_016860.1 1122905 1123303 D putative minor tail protein 1122905..1123303 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246757.1 CDS STMDT12_C10610 NC_016860.1 1123366 1123629 D Gifsy-2 prophage minor tail protein 1123366..1123629 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246758.1 CDS STMDT12_C10620 NC_016860.1 1123610 1126696 D COG5281 Phage-related minor tail protein; putative minor tail protein 1123610..1126696 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246759.1 CDS STMDT12_C10630 NC_016860.1 1126693 1127025 D COG4718 Phage-related protein; phage minor tail protein 1126693..1127025 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246760.1 CDS STMDT12_C10640 NC_016860.1 1127124 1127621 D COG1629 Outer membrane receptor proteins, mostly Fe transport; attachment/invasion protein 1127124..1127621 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246761.1 CDS STMDT12_C10650 NC_016860.1 1127738 1128271 R COG2032 Cu/Zn superoxide dismutase; copper/zinc superoxide dismutase complement(1127738..1128271) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246762.1 CDS STMDT12_C10660 NC_016860.1 1128361 1129056 D COG4672 Phage-related protein; putative minor tail protein 1128361..1129056 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246763.1 CDS STMDT12_C10670 NC_016860.1 1129066 1129803 D COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; Gifsy-2 prophage tail assembly protein 1129066..1129803 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246764.1 CDS STMDT12_C10680 NC_016860.1 1129863 1130405 D COG4723 Phage-related protein, tail component; tail assembly protein 1129863..1130405 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246765.1 CDS STMDT12_C10690 NC_016860.1 1130477 1132924 D COG4733 Phage-related protein, tail component; putative frameshift mutation; host specificity protein J 1130477..1132924 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246766.1 CDS STMDT12_C10700 NC_016860.1 1132951 1133826 D COG4733 Phage-related protein, tail component; putative frameshift mutation; host specificity protein J 1132951..1133826 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246767.1 CDS STMDT12_C10710 NC_016860.1 1133865 1134107 D hypothetical protein 1133865..1134107 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246768.1 CDS STMDT12_C10720 NC_016860.1 1134161 1136599 D Gifsy-2 prophage tail fiber protein 1134161..1136599 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246769.1 CDS STMDT12_C10730 NC_016860.1 1136599 1137180 D tail fiber assembly-likeprotein 1136599..1137180 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246770.1 CDS STMDT12_C10740 NC_016860.1 1137656 1138624 D secreted effector protein 1137656..1138624 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246771.1 CDS STMDT12_C10750 NC_016860.1 1138892 1139140 D COG3436 Transposase and inactivated derivatives; ISSfl3 orfC,D 1138892..1139140 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246772.1 CDS STMDT12_C10760 NC_016860.1 1139272 1139898 R COG2135 Uncharacterized conserved protein; hypothetical protein complement(1139272..1139898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246773.1 CDS STMDT12_C10770 NC_016860.1 1140251 1140937 R hypothetical protein complement(1140251..1140937) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246774.1 CDS STMDT12_C10780 NC_016860.1 1141208 1141399 R Gifsy-2 prophage MsgA complement(1141208..1141399) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246775.1 CDS pepN NC_016860.1 1141826 1144438 D COG0308 Aminopeptidase N; aminopeptidase N 1141826..1144438 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246776.1 CDS STMDT12_C10800 NC_016860.1 1144646 1145656 D COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 1144646..1145656 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246777.1 CDS STMDT12_C10810 NC_016860.1 1145822 1146364 D hypothetical protein 1145822..1146364 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246778.1 CDS STMDT12_C10820 NC_016860.1 1146361 1147470 R COG3217 Uncharacterized Fe-S protein; MOSC domain-containing protein complement(1146361..1147470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246779.1 CDS rlmL NC_016860.1 1147569 1149677 D COG0116 Predicted N6-adenine-specific DNA methylase; 23S rRNA methyltransferase L 1147569..1149677 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246780.1 CDS STMDT12_C10840 NC_016860.1 1149690 1151597 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 1149690..1151597 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246781.1 CDS STMDT12_C10850 NC_016860.1 1151612 1152865 D COG2995 Uncharacterized paraquat-inducible protein A; paraquat-inducible protein A 1151612..1152865 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246782.1 CDS STMDT12_C10860 NC_016860.1 1152870 1154510 D COG3008 Paraquat-inducible protein B; paraquat-inducible protein B 1152870..1154510 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246783.1 CDS STMDT12_C10870 NC_016860.1 1154507 1155070 D COG3009 Uncharacterized protein conserved in bacteria; putative lipoprotein 1154507..1155070 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246784.1 CDS STMDT12_C10880 NC_016860.1 1155326 1155493 D COG3130 Ribosome modulation factor; ribosome modulation factor 1155326..1155493 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246785.1 CDS fabA NC_016860.1 1155593 1156111 R COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; 3-hydroxydecanoyl-ACP dehydratase complement(1155593..1156111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246786.1 CDS STMDT12_C10900 NC_016860.1 1156180 1157940 R COG1067 Predicted ATP-dependent protease; putative ATP-dependent protease complement(1156180..1157940) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246787.1 CDS STMDT12_C10910 NC_016860.1 1158126 1158578 D COG3120 Uncharacterized protein conserved in bacteria; hypothetical protein 1158126..1158578 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246788.1 CDS STMDT12_C10920 NC_016860.1 1158650 1159759 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane protein A complement(1158650..1159759) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246789.1 CDS STMDT12_C10930 NC_016860.1 1160059 1160568 R COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation; SOS cell division inhibitor complement(1160059..1160568) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246790.1 CDS STMDT12_C10940 NC_016860.1 1160785 1161390 D COG3070 Regulator of competence-specific genes; TfoX family protein 1160785..1161390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246791.1 CDS STMDT12_C10950 NC_016860.1 1161377 1163530 R COG1289 Predicted membrane protein; membrane protein complement(1161377..1163530) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246792.1 CDS STMDT12_C10960 NC_016860.1 1163549 1163995 R COG3304 Predicted membrane protein; hypothetical protein complement(1163549..1163995) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246793.1 CDS helD NC_016860.1 1164119 1166173 D COG0210 Superfamily I DNA and RNA helicases; DNA helicase IV 1164119..1166173 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246794.1 CDS mgsA NC_016860.1 1166209 1166667 R COG1803 Methylglyoxal synthase; methylglyoxal synthase complement(1166209..1166667) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246795.1 CDS STMDT12_C10990 NC_016860.1 1166762 1167424 R COG3110 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1166762..1167424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246796.1 CDS STMDT12_C11000 NC_016860.1 1167598 1168011 D COG1832 Predicted CoA-binding protein; hypothetical protein 1167598..1168011 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246797.1 CDS STMDT12_C11010 NC_016860.1 1168056 1168373 R COG3785 Uncharacterized conserved protein; heat shock protein HspQ complement(1168056..1168373) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246798.1 CDS STMDT12_C11020 NC_016860.1 1168431 1169642 R COG1092 Predicted SAM-dependent methyltransferases; 23S rRNA methyltransferase I complement(1168431..1169642) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246799.1 CDS STMDT12_C11030 NC_016860.1 1169756 1169860 D hypothetical protein 1169756..1169860 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246800.1 CDS STMDT12_C11040 NC_016860.1 1169857 1170405 D COG1881 Phospholipid-binding protein; putative outer membrane protein 1169857..1170405 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246801.1 CDS STMDT12_C11050 NC_016860.1 1170431 1171210 D COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 1170431..1171210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246802.1 CDS STMDT12_C11060 NC_016860.1 1171259 1171540 D COG1254 Acylphosphatases; acylphosphatase 1171259..1171540 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246803.1 CDS STMDT12_C11070 NC_016860.1 1171537 1171866 R COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit; sulfur transfer complex subunit TusE complement(1171537..1171866) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246804.1 CDS STMDT12_C11080 NC_016860.1 1171953 1172612 R COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein complement(1171953..1172612) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246805.1 CDS STMDT12_C11090 NC_016860.1 1173233 1173736 R pathogenicity island-encoded protein A complement(1173233..1173736) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246806.1 CDS STMDT12_C11100 NC_016860.1 1174135 1175010 R COG1357 Uncharacterized low-complexity proteins; secreted effector protein complement(1174135..1175010) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246807.1 CDS STMDT12_C11110 NC_016860.1 1175558 1175899 R cell invasion protein complement(1175558..1175899) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246808.1 CDS STMDT12_C11120 NC_016860.1 1175916 1177601 R cell invasion protein complement(1175916..1177601) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246809.1 CDS STMDT12_C11130 NC_016860.1 1178323 1179792 R COG4690 Dipeptidase; peptidase C69 family protein complement(1178323..1179792) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246810.1 CDS STMDT12_C11140 NC_016860.1 1179965 1181329 R COG0642 Signal transduction histidine kinase; copper resistance protein complement(1179965..1181329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246811.1 CDS STMDT12_C11150 NC_016860.1 1181322 1182002 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator YedW complement(1181322..1182002) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246812.1 CDS STMDT12_C11160 NC_016860.1 1182138 1182548 D COG2351 Transthyretin-like protein; hydroxyisourate hydrolase 1182138..1182548 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246813.1 CDS STMDT12_C11170 NC_016860.1 1182881 1183393 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; 4-hydroxyphenylacetate 3-monooxygenase, reductase component complement(1182881..1183393) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246814.1 CDS STMDT12_C11180 NC_016860.1 1183411 1184973 R COG2368 Aromatic ring hydroxylase; 4-hydroxyphenylacetate 3-monooxygenase complement(1183411..1184973) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246815.1 CDS STMDT12_C11190 NC_016860.1 1185191 1185631 R COG1846 Transcriptional regulators; homoprotocatechuate degradation operon regulator HpaR complement(1185191..1185631) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246816.1 CDS STMDT12_C11200 NC_016860.1 1185906 1187195 D COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 4-hydroxyphenylacetate catabolism protein 1185906..1187195 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246817.1 CDS STMDT12_C11210 NC_016860.1 1187192 1188658 D COG1012 NAD-dependent aldehyde dehydrogenases; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1187192..1188658 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246818.1 CDS STMDT12_C11220 NC_016860.1 1188660 1189511 D COG3384 Uncharacterized conserved protein; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1188660..1189511 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246819.1 CDS STMDT12_C11230 NC_016860.1 1189521 1189901 D COG3232 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1189521..1189901 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246820.1 CDS STMDT12_C11240 NC_016860.1 1190044 1190847 D COG3971 2-keto-4-pentenoate hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1190044..1190847 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246821.1 CDS STMDT12_C11250 NC_016860.1 1190858 1191649 D COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1190858..1191649 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246822.1 CDS STMDT12_C11260 NC_016860.1 1191721 1193097 D COG0477 Permeases of the major facilitator superfamily; putative 4-hydroxyphenylacetate permease 1191721..1193097 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246823.1 CDS STMDT12_C11270 NC_016860.1 1193107 1194003 D COG2207 AraC-type DNA-binding domain-containing proteins; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1193107..1194003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246824.1 CDS STMDT12_C11280 NC_016860.1 1194017 1194955 D COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; hypothetical protein 1194017..1194955 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246825.1 CDS STMDT12_C11290 NC_016860.1 1195363 1195725 R hypothetical protein complement(1195363..1195725) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246826.1 CDS STMDT12_C11300 NC_016860.1 1196173 1196328 D hypothetical protein 1196173..1196328 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246827.1 CDS STMDT12_C11310 NC_016860.1 1196379 1196684 R chaperone-modulator protein CbpM complement(1196379..1196684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246828.1 CDS STMDT12_C11320 NC_016860.1 1196684 1197604 R COG2214 DnaJ-class molecular chaperone; curved DNA-binding protein CbpA complement(1196684..1197604) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246829.1 CDS STMDT12_C11330 NC_016860.1 1197896 1198201 D copper-sensitivity suppressor A protein 1197896..1198201 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246830.1 CDS STMDT12_C11340 NC_016860.1 1198250 1200136 D COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis; suppression of copper sensitivity protein 1198250..1200136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246831.1 CDS STMDT12_C11350 NC_016860.1 1200133 1200756 D COG1651 Protein-disulfide isomerase; suppression of copper sensitivity protein 1200133..1200756 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246832.1 CDS STMDT12_C11360 NC_016860.1 1200746 1201252 D COG0526 Thiol-disulfide isomerase and thioredoxins; suppression of copper sensitivity protein D 1200746..1201252 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246833.1 CDS STMDT12_C11370 NC_016860.1 1201385 1202626 D glucose-1-phosphatase/inositol phosphatase 1201385..1202626 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246834.1 CDS STMDT12_C11380 NC_016860.1 1202660 1202887 R hypothetical protein complement(1202660..1202887) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246835.1 CDS STMDT12_C11390 NC_016860.1 1202908 1203504 R COG0655 Multimeric flavodoxin WrbA; TrpR binding protein WrbA complement(1202908..1203504) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246836.1 CDS STMDT12_C11400 NC_016860.1 1204193 1204831 D COG1309 Transcriptional regulator; putative TetR-family transcriptional regulator 1204193..1204831 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246837.1 CDS STMDT12_C11410 NC_016860.1 1204828 1205223 R COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1204828..1205223) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246838.1 CDS putA NC_016860.1 1205282 1209244 R COG0506 Proline dehydrogenase; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1205282..1209244) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246839.1 CDS STMDT12_C11430 NC_016860.1 1209666 1211174 D COG0591 Na+/proline symporter; sodium/proline symporter 1209666..1211174 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246840.1 CDS STMDT12_C11440 NC_016860.1 1211792 1212088 D hypothetical protein 1211792..1212088 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246841.1 CDS STMDT12_C11450 NC_016860.1 1212067 1212855 D COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; hypothetical protein 1212067..1212855 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246842.1 CDS STMDT12_C11460 NC_016860.1 1212961 1213842 R COG1737 Transcriptional regulators; putative transcriptional regulator complement(1212961..1213842) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246843.1 CDS STMDT12_C11470 NC_016860.1 1214127 1215623 R COG0591 Na+/proline symporter; putative sodium/glucose cotransporter complement(1214127..1215623) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246844.1 CDS STMDT12_C11480 NC_016860.1 1215960 1216640 R COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase complement(1215960..1216640) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246845.1 CDS STMDT12_C11490 NC_016860.1 1217146 1218306 D COG3055 Uncharacterized protein conserved in bacteria; N-acetylneuraminic acid mutarotase 1217146..1218306 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246846.1 CDS STMDT12_C11500 NC_016860.1 1218352 1219044 D hypothetical protein 1218352..1219044 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246847.1 CDS STMDT12_C11510 NC_016860.1 1219327 1220607 D COG0477 Permeases of the major facilitator superfamily; putative sialic acid transporter 1219327..1220607 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246848.1 CDS STMDT12_C11520 NC_016860.1 1220618 1221724 D COG0673 Predicted dehydrogenases and related proteins; putative dehydrogenase 1220618..1221724 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246849.1 CDS STMDT12_C11530 NC_016860.1 1222752 1223690 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; putative 2-hydroxyacid dehydrogenase 1222752..1223690 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246850.1 CDS STMDT12_C11540 NC_016860.1 1223774 1224511 D COG1387 Histidinol phosphatase and related hydrolases of the PHP family; putative hydrolase 1223774..1224511 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246851.1 CDS STMDT12_C11550 NC_016860.1 1224535 1225089 D COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone, TorD family protein 1224535..1225089 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246852.1 CDS STMDT12_C11560 NC_016860.1 1225178 1225672 D inner membrane protein YcdZ 1225178..1225672 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246853.1 CDS STMDT12_C11570 NC_016860.1 1225711 1226544 R COG1462 Uncharacterized protein involved in formation of curli polymers; curli assembly/transport protein CsgG complement(1225711..1226544) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246854.1 CDS STMDT12_C11580 NC_016860.1 1226571 1226987 R curli assembly protein CsgF complement(1226571..1226987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246855.1 CDS STMDT12_C11590 NC_016860.1 1227014 1227409 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; curli assembly protein CsgE complement(1227014..1227409) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246856.1 CDS STMDT12_C11600 NC_016860.1 1227414 1228064 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional regulator CsgD complement(1227414..1228064) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246857.1 CDS csgB NC_016860.1 1228792 1229274 D minor curlin protein CsgB 1228792..1229274 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246858.1 CDS csgA NC_016860.1 1229316 1229771 D COG1012 NAD-dependent aldehyde dehydrogenases; major curlin protein CsgA 1229316..1229771 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246859.1 CDS csgC NC_016860.1 1229734 1230159 D putative autoagglutination protein 1229734..1230159 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246860.1 CDS STMDT12_C11640 NC_016860.1 1230290 1230610 D hypothetical protein 1230290..1230610 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246861.1 CDS STMDT12_C11650 NC_016860.1 1230699 1231238 D COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; hypothetical protein 1230699..1231238 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246862.1 CDS STMDT12_C11660 NC_016860.1 1231174 1232661 D COG1502 Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes; hypothetical protein 1231174..1232661 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246863.1 CDS mdoC NC_016860.1 1232678 1233832 R glucans biosynthesis protein complement(1232678..1233832) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246864.1 CDS mdoG NC_016860.1 1234086 1235639 D COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein G 1234086..1235639 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246865.1 CDS STMDT12_C11690 NC_016860.1 1235632 1238175 D COG2943 Membrane glycosyltransferase; glucosyltransferase MdoH 1235632..1238175 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246866.1 CDS STMDT12_C11700 NC_016860.1 1238273 1238476 D COG5645 Predicted periplasmic lipoprotein; hypothetical protein 1238273..1238476 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246867.1 CDS STMDT12_C11710 NC_016860.1 1238477 1238851 R hypothetical protein complement(1238477..1238851) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246868.1 CDS STMDT12_C11720 NC_016860.1 1238933 1240147 R COG0477 Permeases of the major facilitator superfamily; drug efflux system protein MdtG complement(1238933..1240147) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246869.1 CDS STMDT12_C11730 NC_016860.1 1240302 1241222 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase complement(1240302..1241222) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246870.1 CDS STMDT12_C11740 NC_016860.1 1241442 1242494 D COG1054 Predicted sulfurtransferase; hypothetical protein 1241442..1242494 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246871.1 CDS STMDT12_C11750 NC_016860.1 1242546 1243121 R COG2353 Uncharacterized conserved protein; hypothetical protein complement(1242546..1243121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246872.1 CDS STMDT12_C11760 NC_016860.1 1243118 1243690 R COG3038 Cytochrome B561; hypothetical protein complement(1243118..1243690) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246873.1 CDS STMDT12_C11770 NC_016860.1 1243953 1244066 R hypothetical protein complement(1243953..1244066) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246874.1 CDS solA NC_016860.1 1244107 1245225 R COG0665 Glycine/D-amino acid oxidases (deaminating); N-methyltryptophan oxidase complement(1244107..1245225) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246875.1 CDS bssS NC_016860.1 1245338 1245592 R biofilm formation regulatory protein BssS complement(1245338..1245592) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246876.1 CDS STMDT12_C11800 NC_016860.1 1245882 1246127 R DNA damage-inducible protein I complement(1245882..1246127) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246877.1 CDS STMDT12_C11810 NC_016860.1 1246201 1247247 R COG0418 Dihydroorotase; dihydroorotase complement(1246201..1247247) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246878.1 CDS STMDT12_C11820 NC_016860.1 1247352 1247912 R hypothetical protein complement(1247352..1247912) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246879.1 CDS STMDT12_C11830 NC_016860.1 1248037 1248684 R COG2999 Glutaredoxin 2; glutaredoxin complement(1248037..1248684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246880.1 CDS STMDT12_C11840 NC_016860.1 1248748 1249956 R COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein MdtH complement(1248748..1249956) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246881.1 CDS STMDT12_C11850 NC_016860.1 1250193 1250777 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-alanine N-acetyltransferase 1250193..1250777 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246882.1 CDS STMDT12_C11860 NC_016860.1 1250813 1251460 D COG3132 Uncharacterized protein conserved in bacteria; hypothetical protein 1250813..1251460 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246883.1 CDS STMDT12_C11870 NC_016860.1 1251462 1252385 D COG0673 Predicted dehydrogenases and related proteins; putative virulence protein 1251462..1252385 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246884.1 CDS STMDT12_C11880 NC_016860.1 1252650 1254224 D COG0728 Uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 1252650..1254224 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246885.1 CDS STMDT12_C11890 NC_016860.1 1254306 1254698 R flagellar synthesis protein FlgN complement(1254306..1254698) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246886.1 CDS flgM NC_016860.1 1254733 1255026 R COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); anti-sigma-28 factor FlgM complement(1254733..1255026) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246887.1 CDS flgA NC_016860.1 1255118 1255777 R COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA complement(1255118..1255777) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246888.1 CDS flgB NC_016860.1 1255934 1256350 D COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 1255934..1256350 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246889.1 CDS flgC NC_016860.1 1256354 1256758 D COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 1256354..1256758 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246890.1 CDS flgD NC_016860.1 1256770 1257468 D COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 1256770..1257468 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246891.1 CDS flgE NC_016860.1 1257495 1258706 D COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 1257495..1258706 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246892.1 CDS flgF NC_016860.1 1258727 1259482 D COG4787 Flagellar basal body rod protein; flagellar basal body rod protein FlgF 1258727..1259482 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246893.1 CDS flgG NC_016860.1 1259496 1260278 D COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1259496..1260278 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246894.1 CDS flgH NC_016860.1 1260333 1261031 D COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 1260333..1261031 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246895.1 CDS flgI NC_016860.1 1261043 1262140 D COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein 1261043..1262140 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246896.1 CDS flgJ NC_016860.1 1262140 1263090 D COG3951 Rod binding protein; flagellar rod assembly protein/muramidase FlgJ 1262140..1263090 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246897.1 CDS flgK NC_016860.1 1263155 1264816 D COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 1263155..1264816 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246898.1 CDS flgL NC_016860.1 1264831 1265784 D COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 1264831..1265784 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246899.1 CDS rne NC_016860.1 1266041 1269244 R COG1530 Ribonucleases G and E; ribonuclease E complement(1266041..1269244) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246900.1 CDS STMDT12_C12040 NC_016860.1 1269380 1269628 D hypothetical protein 1269380..1269628 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246901.1 CDS STMDT12_C12050 NC_016860.1 1269818 1270777 D COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase C 1269818..1270777 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246902.1 CDS STMDT12_C12060 NC_016860.1 1270915 1271676 D putative inner membrane lipoprotein 1270915..1271676 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246903.1 CDS STMDT12_C12070 NC_016860.1 1271882 1272106 D hypothetical protein 1271882..1272106 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246904.1 CDS STMDT12_C12080 NC_016860.1 1272178 1272762 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(1272178..1272762) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246905.1 CDS STMDT12_C12090 NC_016860.1 1272960 1273481 D COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 1272960..1273481 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246906.1 CDS rpmF NC_016860.1 1273533 1273706 D COG0333 Ribosomal protein L32; 50S ribosomal protein L32 1273533..1273706 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246907.1 CDS STMDT12_C12110 NC_016860.1 1273870 1274919 D COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 1273870..1274919 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246908.1 CDS fabH NC_016860.1 1274999 1275952 D COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-ACP synthase 1274999..1275952 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246909.1 CDS fabD NC_016860.1 1275968 1276897 D COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-[acyl-carrier-protein] transacylase 1275968..1276897 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246910.1 CDS fabG NC_016860.1 1276910 1277644 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-[acyl-carrier-protein] reductase 1276910..1277644 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246911.1 CDS STMDT12_C12150 NC_016860.1 1277800 1278036 D COG0236 Acyl carrier protein; hypothetical protein 1277800..1278036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246912.1 CDS fabF NC_016860.1 1278122 1279363 D COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-ACP synthase 1278122..1279363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246913.1 CDS STMDT12_C12170 NC_016860.1 1279487 1280296 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 1279487..1280296 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246914.1 CDS STMDT12_C12180 NC_016860.1 1280299 1281321 D COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 1280299..1281321 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246915.1 CDS tmk NC_016860.1 1281311 1281952 D COG0125 Thymidylate kinase; thymidylate kinase 1281311..1281952 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246916.1 CDS STMDT12_C12200 NC_016860.1 1281949 1282953 D COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1281949..1282953 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246917.1 CDS STMDT12_C12210 NC_016860.1 1282964 1283761 D COG0084 Mg-dependent DNase; putative metallo-dependent hydrolase 1282964..1283761 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246918.1 CDS STMDT12_C12220 NC_016860.1 1284056 1285489 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; glucose-specific PTS system IIBC protein 1284056..1285489 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246919.1 CDS STMDT12_C12230 NC_016860.1 1285574 1287748 R COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; ferric-rhodotorulic acid outer membrane transporter complement(1285574..1287748) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246920.1 CDS STMDT12_C12240 NC_016860.1 1288072 1288449 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; purine nucleoside phosphoramidase 1288072..1288449 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246921.1 CDS STMDT12_C12250 NC_016860.1 1288452 1288826 D COG5633 Predicted periplasmic lipoprotein; putative outer membrane lipoprotein 1288452..1288826 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246922.1 CDS STMDT12_C12260 NC_016860.1 1288840 1289478 D COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family); putative lipoprotein 1288840..1289478 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246923.1 CDS thiK NC_016860.1 1289459 1290283 D COG0510 Predicted choline kinase involved in LPS biosynthesis; thiamine kinase 1289459..1290283 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246924.1 CDS STMDT12_C12280 NC_016860.1 1290306 1291319 D COG1472 Beta-glucosidase-related glycosidases; beta-hexosaminidase 1290306..1291319 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246925.1 CDS STMDT12_C12290 NC_016860.1 1291470 1291886 D COG3150 Predicted esterase; hypothetical protein 1291470..1291886 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246926.1 CDS STMDT12_C12300 NC_016860.1 1292141 1293445 D COG1252 NADH dehydrogenase, FAD-containing subunit; respiratory NADH dehydrogenase 2 1292141..1293445 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246927.1 CDS STMDT12_C12310 NC_016860.1 1293624 1294163 D COG3134 Predicted outer membrane lipoprotein; hypothetical protein 1293624..1294163 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246928.1 CDS STMDT12_C12320 NC_016860.1 1294238 1294873 R COG1309 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(1294238..1294873) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246929.1 CDS STMDT12_C12330 NC_016860.1 1295115 1295372 D hypothetical protein 1295115..1295372 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246930.1 CDS STMDT12_C12340 NC_016860.1 1295469 1296434 R COG1376 Uncharacterized protein conserved in bacteria; LysM domain/ErfK/YbiS/YcfS/YnhG family protein complement(1295469..1296434) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246931.1 CDS STMDT12_C12350 NC_016860.1 1296582 1300028 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcriptional repressor UlaR complement(1296582..1300028) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246932.1 CDS STMDT12_C12360 NC_016860.1 1300366 1301565 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolC 1300366..1301565 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246933.1 CDS lolD NC_016860.1 1301558 1302259 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein ABC transporter ATP-binding protein 1301558..1302259 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246934.1 CDS STMDT12_C12380 NC_016860.1 1302259 1303503 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolE 1302259..1303503 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246935.1 CDS STMDT12_C12390 NC_016860.1 1303532 1304443 D COG1940 Transcriptional regulator/sugar kinase; N-acetyl-D-glucosamine kinase 1303532..1304443 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246936.1 CDS STMDT12_C12400 NC_016860.1 1304462 1305283 D COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1304462..1305283 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246937.1 CDS potD NC_016860.1 1305365 1306411 R COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine ABC transporter substrate binding protein complement(1305365..1306411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246938.1 CDS potC NC_016860.1 1306436 1307215 R COG1177 ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter permease complement(1306436..1307215) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246939.1 CDS sifA NC_016860.1 1307531 1308541 R secreted effector protein complement(1307531..1308541) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246940.1 CDS potB NC_016860.1 1308870 1309733 R COG1176 ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter permease complement(1308870..1309733) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246941.1 CDS potA NC_016860.1 1309717 1310853 R COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine/spermidine ABC transporter ATP-binding protein complement(1309717..1310853) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246942.1 CDS STMDT12_C12460 NC_016860.1 1311104 1312333 D COG2195 Di- and tripeptidases; peptidase T 1311104..1312333 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246943.1 CDS STMDT12_C12470 NC_016860.1 1312337 1313671 D COG0457 FOG: TPR repeat; hypothetical protein 1312337..1313671 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246944.1 CDS STMDT12_C12480 NC_016860.1 1313711 1314832 R COG2850 Uncharacterized conserved protein; putative cytoplasmic protein complement(1313711..1314832) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246945.1 CDS STMDT12_C12490 NC_016860.1 1314913 1316376 R COG0642 Signal transduction histidine kinase; sensor kinase PhoQ complement(1314913..1316376) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246946.1 CDS STMDT12_C12500 NC_016860.1 1316376 1317050 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator PhoP complement(1316376..1317050) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246947.1 CDS STMDT12_C12510 NC_016860.1 1317174 1318544 R COG0015 Adenylosuccinate lyase; adenylosuccinate lyase complement(1317174..1318544) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246948.1 CDS STMDT12_C12520 NC_016860.1 1318548 1319189 R COG2915 Uncharacterized protein involved in purine metabolism; hypothetical protein complement(1318548..1319189) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246949.1 CDS mnmA NC_016860.1 1319276 1320382 R COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA complement(1319276..1320382) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246950.1 CDS STMDT12_C12540 NC_016860.1 1320436 1320897 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; putative MutT-like protein complement(1320436..1320897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246951.1 CDS STMDT12_C12550 NC_016860.1 1320909 1321238 R COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein; hypothetical protein complement(1320909..1321238) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246952.1 CDS STMDT12_C12560 NC_016860.1 1321235 1321900 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase E complement(1321235..1321900) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246953.1 CDS STMDT12_C12570 NC_016860.1 1322072 1323322 D COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 1322072..1323322 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246954.1 CDS STMDT12_C12580 NC_016860.1 1323770 1324894 D putative cytoplasmic protein 1323770..1324894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246955.1 CDS STMDT12_C12590 NC_016860.1 1325351 1325554 R hypothetical protein complement(1325351..1325554) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246956.1 CDS STMDT12_C12600 NC_016860.1 1325876 1326664 R putative envelope lipoprotein complement(1325876..1326664) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246957.1 CDS STMDT12_C12610 NC_016860.1 1327153 1327392 R putative virulence protein complement(1327153..1327392) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246958.1 CDS STMDT12_C12620 NC_016860.1 1327583 1328104 R putative envelope protein complement(1327583..1328104) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246959.1 CDS cspH NC_016860.1 1328519 1328731 R COG1278 Cold shock proteins; cold shock protein complement(1328519..1328731) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246960.1 CDS STMDT12_C12640 NC_016860.1 1329938 1330495 D COG3637 Opacity protein and related surface antigens; outer membrane invasion protein 1329938..1330495 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246961.1 CDS STMDT12_C12650 NC_016860.1 1331732 1332076 R lysozyme inhibitor complement(1331732..1332076) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246962.1 CDS STMDT12_C12660 NC_016860.1 1332454 1332579 D putative lipoprotein 1332454..1332579 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246963.1 CDS STMDT12_C12670 NC_016860.1 1332779 1333051 D putative cytoplasmic protein 1332779..1333051 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246964.1 CDS STMDT12_C12680 NC_016860.1 1333203 1333670 D COG0071 Molecular chaperone (small heat shock protein); heat shock protein 1333203..1333670 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246965.1 CDS STMDT12_C12690 NC_016860.1 1334009 1335052 D COG4692 Predicted neuraminidase (sialidase); putative cytoplasmic protein 1334009..1335052 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246966.1 CDS STMDT12_C12700 NC_016860.1 1335135 1335542 R COG3038 Cytochrome B561; putative inner membrane protein complement(1335135..1335542) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246967.1 CDS STMDT12_C12710 NC_016860.1 1335813 1336127 R hypothetical protein complement(1335813..1336127) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246968.1 CDS STMDT12_C12720 NC_016860.1 1336809 1338443 D COG0747 ABC-type dipeptide transport system, periplasmic component; nickel ABC transporter substrate binding protein 1336809..1338443 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246969.1 CDS STMDT12_C12730 NC_016860.1 1338443 1339417 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; putative inner membrane transport protein 1338443..1339417 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246970.1 CDS STMDT12_C12740 NC_016860.1 1339407 1340219 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; putative inner membrane transport protein 1339407..1340219 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246971.1 CDS STMDT12_C12750 NC_016860.1 1340213 1341010 D COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; hypothetical protein 1340213..1341010 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246972.1 CDS STMDT12_C12760 NC_016860.1 1341004 1341594 D COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; putative ABC transporter ATP-binding protein 1341004..1341594 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246973.1 CDS STMDT12_C12770 NC_016860.1 1341676 1342809 R COG0668 Small-conductance mechanosensitive channel; small-conductance mechanosensitive channel complement(1341676..1342809) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246974.1 CDS STMDT12_C12780 NC_016860.1 1343003 1343329 D COG1145 Ferredoxin; hypothetical protein 1343003..1343329 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246975.1 CDS STMDT12_C12790 NC_016860.1 1343526 1344173 D COG3443 Predicted periplasmic or secreted protein; hypothetical protein 1343526..1344173 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246976.1 CDS STMDT12_C12800 NC_016860.1 1344201 1345070 D COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 1344201..1345070 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246977.1 CDS STMDT12_C12810 NC_016860.1 1345161 1345808 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative regulatory protein 1345161..1345808 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246978.1 CDS STMDT12_C12820 NC_016860.1 1345877 1346725 D COG0789 Predicted transcriptional regulators; putative transcriptional regulator 1345877..1346725 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246979.1 CDS STMDT12_C12830 NC_016860.1 1346980 1347168 R putative cytoplasmic protein complement(1346980..1347168) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246980.1 CDS STMDT12_C12840 NC_016860.1 1347307 1347456 R putative cytoplasmic protein complement(1347307..1347456) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246981.1 CDS STMDT12_C12850 NC_016860.1 1347539 1348084 D COG1605 Chorismate mutase; chorismate mutase 1347539..1348084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246982.1 CDS STMDT12_C12860 NC_016860.1 1348281 1348919 D COG1280 Putative threonine efflux protein; leucine export protein LeuE 1348281..1348919 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246983.1 CDS STMDT12_C12870 NC_016860.1 1349092 1349454 D COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; putative cytoplasmic protein 1349092..1349454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246984.1 CDS STMDT12_C12880 NC_016860.1 1349457 1349639 D hypothetical protein 1349457..1349639 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246985.1 CDS STMDT12_C12890 NC_016860.1 1349869 1350510 D putative nitric oxide reductase 1349869..1350510 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246986.1 CDS STMDT12_C12900 NC_016860.1 1350825 1351073 D COG2261 Predicted membrane protein; hypothetical protein 1350825..1351073 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246987.1 CDS STMDT12_C12910 NC_016860.1 1351506 1351757 D COG3042 Putative hemolysin; putative hemolysin 1351506..1351757 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246988.1 CDS STMDT12_C12920 NC_016860.1 1351826 1352137 D hypothetical protein 1351826..1352137 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246989.1 CDS STMDT12_C12930 NC_016860.1 1352123 1352470 R COG3189 Uncharacterized conserved protein; putative bacteriophage protein complement(1352123..1352470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246990.1 CDS STMDT12_C12940 NC_016860.1 1352589 1353773 R COG2807 Cyanate permease; inner membrane transport protein YeaN complement(1352589..1353773) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246991.1 CDS STMDT12_C12950 NC_016860.1 1353874 1354668 D COG2207 AraC-type DNA-binding domain-containing proteins; putative transcriptional regulator 1353874..1354668 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246992.1 CDS STMDT12_C12960 NC_016860.1 1354648 1355094 R COG2707 Predicted membrane protein; hypothetical protein complement(1354648..1355094) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246993.1 CDS STMDT12_C12970 NC_016860.1 1355300 1355407 D hypothetical protein 1355300..1355407 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246994.1 CDS STMDT12_C12980 NC_016860.1 1355404 1355931 R COG2606 Uncharacterized conserved protein; YbaK/prolyl-tRNA synthetase domain-containing protein complement(1355404..1355931) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246995.1 CDS STMDT12_C12990 NC_016860.1 1355972 1357465 R COG2199 FOG: GGDEF domain; putative methyl-accepting chemotaxis protein complement(1355972..1357465) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246996.1 CDS STMDT12_C13000 NC_016860.1 1358106 1359392 R COG2718 Uncharacterized conserved protein; hypothetical protein complement(1358106..1359392) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246997.1 CDS STMDT12_C13010 NC_016860.1 1359515 1361449 R COG2766 Putative Ser protein kinase; putative serine protein kinase PrkA complement(1359515..1361449) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246998.1 CDS STMDT12_C13020 NC_016860.1 1361876 1362622 D COG3713 Outer membrane protein V; putative outer membrane protein 1361876..1362622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005246999.1 CDS STMDT12_C13030 NC_016860.1 1362912 1364108 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase regulator 1362912..1364108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247000.1 CDS STMDT12_C13040 NC_016860.1 1364214 1365062 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; putative oxidoreductase 1364214..1365062 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247001.1 CDS STMDT12_C13050 NC_016860.1 1365161 1366045 R COG0676 Uncharacterized enzymes related to aldose 1-epimerase; aldose 1-epimerase complement(1365161..1366045) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247002.1 CDS STMDT12_C13060 NC_016860.1 1366045 1366221 R hypothetical protein complement(1366045..1366221) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247003.1 CDS STMDT12_C13070 NC_016860.1 1366380 1367375 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(1366380..1367375) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247004.1 CDS STMDT12_C13080 NC_016860.1 1367717 1368130 D COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; methionine sulfoxide reductase B 1367717..1368130 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247005.1 CDS STMDT12_C13090 NC_016860.1 1368172 1368450 D COG3139 Uncharacterized protein conserved in bacteria; general negative regulator of transcription subunit 1 1368172..1368450 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247006.1 CDS STMDT12_C13100 NC_016860.1 1368802 1369458 R COG1335 Amidases related to nicotinamidase; nicotinamidase/pyrazinamidase complement(1368802..1369458) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247007.1 CDS ansA NC_016860.1 1369485 1370501 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; asparaginase complement(1369485..1370501) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247008.1 CDS STMDT12_C13120 NC_016860.1 1370597 1372453 R COG0616 Periplasmic serine proteases (ClpP class); protease 4 complement(1370597..1372453) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247009.1 CDS STMDT12_C13130 NC_016860.1 1372627 1373178 D COG0778 Nitroreductase; hypothetical protein 1372627..1373178 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247010.1 CDS STMDT12_C13140 NC_016860.1 1373296 1374339 D COG0709 Selenophosphate synthase; selenophosphate synthetase 1373296..1374339 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247011.1 CDS STMDT12_C13150 NC_016860.1 1374344 1376293 D COG0550 Topoisomerase IA; DNA topoisomerase III 1374344..1376293 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247012.1 CDS STMDT12_C13160 NC_016860.1 1376323 1377666 R COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase complement(1376323..1377666) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247013.1 CDS STMDT12_C13170 NC_016860.1 1377905 1378180 D hypothetical protein 1377905..1378180 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247014.1 CDS STMDT12_C13180 NC_016860.1 1378140 1378556 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; CTP pyrophosphohydrolase complement(1378140..1378556) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247015.1 CDS STMDT12_C13190 NC_016860.1 1378629 1379435 R COG0708 Exonuclease III; exonuclease III complement(1378629..1379435) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247016.1 CDS STMDT12_C13200 NC_016860.1 1379881 1381107 D COG4992 Ornithine/acetylornithine aminotransferase; bifunctional succinylornithine transaminase/acetylornithine transaminase 1379881..1381107 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247017.1 CDS STMDT12_C13210 NC_016860.1 1381098 1382132 D COG3138 Arginine/ornithine N-succinyltransferase beta subunit; arginine succinyltransferase 1381098..1382132 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247018.1 CDS astD NC_016860.1 1382129 1383607 D COG1012 NAD-dependent aldehyde dehydrogenases; succinylglutamic semialdehyde dehydrogenase 1382129..1383607 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247019.1 CDS STMDT12_C13230 NC_016860.1 1383604 1384947 D COG3724 Succinylarginine dihydrolase; succinylarginine dihydrolase 1383604..1384947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247020.1 CDS STMDT12_C13240 NC_016860.1 1384940 1385908 D COG2988 Succinylglutamate desuccinylase; succinylglutamate desuccinylase 1384940..1385908 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247021.1 CDS STMDT12_C13250 NC_016860.1 1386244 1386729 D COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; hypothetical protein 1386244..1386729 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247022.1 CDS STMDT12_C13260 NC_016860.1 1386804 1387685 R COG0322 Nuclease subunit of the excinuclease complex; nucleotide excision repair endonuclease complement(1386804..1387685) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247023.1 CDS nadE NC_016860.1 1387806 1388633 R COG0171 NAD synthase; NAD synthetase complement(1387806..1388633) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247024.1 CDS STMDT12_C13280 NC_016860.1 1388852 1389193 D DNA-binding transcriptional activator OsmE 1388852..1389193 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247025.1 CDS STMDT12_C13290 NC_016860.1 1389494 1389814 D COG1440 Phosphotransferase system cellobiose-specific component IIB; N,N'-diacetylchitobiose-specific PTS system IIB protein 1389494..1389814 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247026.1 CDS STMDT12_C13300 NC_016860.1 1389897 1391255 D COG1455 Phosphotransferase system cellobiose-specific component IIC; N,N'-diacetylchitobiose-specific PTS system IIC protein 1389897..1391255 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247027.1 CDS STMDT12_C13310 NC_016860.1 1391306 1391653 D COG1447 Phosphotransferase system cellobiose-specific component IIA; N,N'-diacetylchitobiose-specific PTS system IIA protein 1391306..1391653 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247028.1 CDS STMDT12_C13320 NC_016860.1 1391667 1392506 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator ChbR 1391667..1392506 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247029.1 CDS STMDT12_C13330 NC_016860.1 1392631 1393986 D COG1486 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases; 6-phospho-beta-glucosidase 1392631..1393986 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247030.1 CDS STMDT12_C13340 NC_016860.1 1393999 1394757 D COG3394 Uncharacterized protein conserved in bacteria; hypothetical protein 1393999..1394757 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247031.1 CDS katE NC_016860.1 1394801 1397053 R COG0753 Catalase; hydroperoxidase II complement(1394801..1397053) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247032.1 CDS STMDT12_C13360 NC_016860.1 1397421 1397660 D cell division modulator 1397421..1397660 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247033.1 CDS STMDT12_C13370 NC_016860.1 1397762 1399153 R COG1823 Predicted Na+/dicarboxylate symporter; putative sodium:dicarboxylate symporter complement(1397762..1399153) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247034.1 CDS STMDT12_C13380 NC_016860.1 1399290 1399877 R COG1988 Predicted membrane-bound metal-dependent hydrolases; hypothetical protein complement(1399290..1399877) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247035.1 CDS STMDT12_C13390 NC_016860.1 1400027 1400695 R COG0637 Predicted phosphatase/phosphohexomutase; 2-deoxyglucose-6-phosphatase complement(1400027..1400695) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247036.1 CDS STMDT12_C13400 NC_016860.1 1400844 1401380 D hypothetical protein 1400844..1401380 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247037.1 CDS STMDT12_C13410 NC_016860.1 1401423 1402283 R COG3001 Fructosamine-3-kinase; fructosamine kinase complement(1401423..1402283) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247038.1 CDS STMDT12_C13420 NC_016860.1 1402390 1402680 R putative cytoplasmic protein complement(1402390..1402680) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247039.1 CDS STMDT12_C13430 NC_016860.1 1402777 1403709 R COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 6-phosphofructokinase complement(1402777..1403709) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247040.1 CDS STMDT12_C13440 NC_016860.1 1404031 1404756 D COG3137 Putative salt-induced outer membrane protein; putative outer membrane protein 1404031..1404756 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247041.1 CDS STMDT12_C13450 NC_016860.1 1404805 1405764 R COG3528 Uncharacterized protein conserved in bacteria; putative outer membrane protein complement(1404805..1405764) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247042.1 CDS STMDT12_C13460 NC_016860.1 1405907 1406221 D putative inner membrane protein 1405907..1406221 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247043.1 CDS STMDT12_C13470 NC_016860.1 1406218 1407072 D COG1864 DNA/RNA endonuclease G, NUC1; putative DNA/RNA non-specific endonuclease 1406218..1407072 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247044.1 CDS STMDT12_C13480 NC_016860.1 1407774 1408997 R O-antigen polymerase complement(1407774..1408997) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247045.1 CDS STMDT12_C13490 NC_016860.1 1409889 1411817 D COG0441 Threonyl-tRNA synthetase; threonyl-tRNA synthetase 1409889..1411817 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247046.1 CDS infC NC_016860.1 1411929 1412363 D COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 1411929..1412363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247047.1 CDS rpmI NC_016860.1 1412459 1412656 D COG0291 Ribosomal protein L35; 50S ribosomal protein L35 1412459..1412656 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247048.1 CDS rplT NC_016860.1 1412707 1413063 D COG0292 Ribosomal protein L20; 50S ribosomal protein L20 1412707..1413063 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247049.1 CDS pheS NC_016860.1 1413365 1414348 D COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1413365..1414348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247050.1 CDS pheT NC_016860.1 1414364 1416751 D COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta 1414364..1416751 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247051.1 CDS ihfA NC_016860.1 1416756 1417055 D COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit alpha 1416756..1417055 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247052.1 CDS STMDT12_C13560 NC_016860.1 1417258 1418238 D COG4139 ABC-type cobalamin transport system, permease component; vtamin B12 ABC transporter permease protein 1417258..1418238 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247053.1 CDS btuE NC_016860.1 1418330 1418881 D COG0386 Glutathione peroxidase; putative glutathione peroxidase 1418330..1418881 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247054.1 CDS STMDT12_C13580 NC_016860.1 1418881 1419630 D COG4138 ABC-type cobalamin transport system, ATPase component; vitamin B12 ABC transporter ATP-binding protein 1418881..1419630 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247055.1 CDS nlpC NC_016860.1 1419707 1420171 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative lipoprotein NlpC 1419707..1420171 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247056.1 CDS STMDT12_C13600 NC_016860.1 1420485 1421198 D COG2200 FOG: EAL domain; hypothetical protein 1420485..1421198 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247057.1 CDS STMDT12_C13610 NC_016860.1 1421260 1422702 D COG0397 Uncharacterized conserved protein; hypothetical protein 1421260..1422702 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247058.1 CDS STMDT12_C13620 NC_016860.1 1422737 1422919 R COG4256 Hemin uptake protein; hypothetical protein complement(1422737..1422919) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247059.1 CDS STMDT12_C13630 NC_016860.1 1423085 1424131 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1423085..1424131) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247060.1 CDS STMDT12_C13640 NC_016860.1 1424287 1425120 R COG1806 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1424287..1425120) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247061.1 CDS STMDT12_C13650 NC_016860.1 1425297 1425410 R hypothetical protein complement(1425297..1425410) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247062.1 CDS STMDT12_C13660 NC_016860.1 1425457 1427835 D COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 1425457..1427835 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247063.1 CDS STMDT12_C13670 NC_016860.1 1427877 1429517 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; short chain acyl-CoA synthetase complement(1427877..1429517) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247064.1 CDS STMDT12_C13680 NC_016860.1 1429607 1429900 R COG2440 Ferredoxin-like protein; ferredoxin-like protein ydiT complement(1429607..1429900) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247065.1 CDS STMDT12_C13690 NC_016860.1 1429897 1431183 R COG0644 Dehydrogenases (flavoproteins); hypothetical protein complement(1429897..1431183) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247066.1 CDS STMDT12_C13700 NC_016860.1 1431240 1432175 R COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit YdiR complement(1431240..1432175) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247067.1 CDS STMDT12_C13710 NC_016860.1 1432197 1432961 R COG2086 Electron transfer flavoprotein, beta subunit; putative electron transfer flavoprotein YdiQ complement(1432197..1432961) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247068.1 CDS STMDT12_C13720 NC_016860.1 1433424 1434314 D COG2207 AraC-type DNA-binding domain-containing proteins; putative transcriptional regulator 1433424..1434314 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247069.1 CDS STMDT12_C13730 NC_016860.1 1434390 1435541 R COG1960 Acyl-CoA dehydrogenases; putative acyl-CoA dehydrogenase complement(1434390..1435541) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247070.1 CDS STMDT12_C13740 NC_016860.1 1435555 1437150 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; putative acetyl CoA transferase complement(1435555..1437150) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247071.1 CDS aroD NC_016860.1 1437304 1438062 R COG0710 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase complement(1437304..1438062) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247072.1 CDS STMDT12_C13760 NC_016860.1 1438107 1438973 R COG0169 Shikimate 5-dehydrogenase; quinate/shikimate dehydrogenase complement(1438107..1438973) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247073.1 CDS STMDT12_C13770 NC_016860.1 1439040 1440275 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(1439040..1440275) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247074.1 CDS STMDT12_C13780 NC_016860.1 1440639 1441850 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(1440639..1441850) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247075.1 CDS STMDT12_C13790 NC_016860.1 1441991 1442350 R putative cytoplasmic protein complement(1441991..1442350) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247076.1 CDS STMDT12_C13800 NC_016860.1 1442808 1443926 R COG0628 Predicted permease; putative inner membrane protein complement(1442808..1443926) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247077.1 CDS STMDT12_C13810 NC_016860.1 1444191 1447247 D COG0277 FAD/FMN-containing dehydrogenases; putative oxidase 1444191..1447247 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247078.1 CDS STMDT12_C13820 NC_016860.1 1447244 1447654 D COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 1447244..1447654 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247079.1 CDS STMDT12_C13830 NC_016860.1 1447753 1447941 D hypothetical protein 1447753..1447941 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247080.1 CDS STMDT12_C13840 NC_016860.1 1448229 1449575 R COG1823 Predicted Na+/dicarboxylate symporter; putative Na+-dicarboxylate symporter complement(1448229..1449575) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247081.1 CDS sufA NC_016860.1 1450002 1450370 D COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly scaffold protein 1450002..1450370 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247082.1 CDS STMDT12_C13860 NC_016860.1 1450379 1451866 D COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufB 1450379..1451866 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247083.1 CDS sufC NC_016860.1 1451883 1452629 D COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; cysteine desulfurase 1451883..1452629 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247084.1 CDS STMDT12_C13880 NC_016860.1 1452604 1453875 D COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufD 1452604..1453875 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247085.1 CDS STMDT12_C13890 NC_016860.1 1453872 1455092 D COG0520 Selenocysteine lyase; bifunctional cysteine desulfurase/selenocysteine lyase 1453872..1455092 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247086.1 CDS STMDT12_C13900 NC_016860.1 1455105 1455521 D COG2166 SufE protein probably involved in Fe-S center assembly; cysteine desufuration protein SufE 1455105..1455521 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247087.1 CDS STMDT12_C13910 NC_016860.1 1455676 1456677 D COG1376 Uncharacterized protein conserved in bacteria; hypothetical protein 1455676..1456677 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247088.1 CDS STMDT12_C13920 NC_016860.1 1456744 1456983 R COG4238 Murein lipoprotein; hypothetical protein complement(1456744..1456983) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247089.1 CDS STMDT12_C13930 NC_016860.1 1457066 1457302 R COG4238 Murein lipoprotein; major outer membrane lipoprotein complement(1457066..1457302) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247090.1 CDS STMDT12_C13940 NC_016860.1 1457613 1459025 R COG0469 Pyruvate kinase; pyruvate kinase complement(1457613..1459025) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247091.1 CDS STMDT12_C13950 NC_016860.1 1459427 1460770 R COG0531 Amino acid transporters; amino acid transporter complement(1459427..1460770) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247092.1 CDS STMDT12_C13960 NC_016860.1 1460792 1461685 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative proline iminopeptidase complement(1460792..1461685) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247093.1 CDS STMDT12_C13970 NC_016860.1 1461744 1462481 R COG5426 Uncharacterized membrane protein; hypothetical protein complement(1461744..1462481) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247094.1 CDS STMDT12_C13980 NC_016860.1 1462493 1463719 R COG1349 Transcriptional regulators of sugar metabolism; putative regulatory protein complement(1462493..1463719) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247095.1 CDS STMDT12_C13990 NC_016860.1 1464042 1467104 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; tetrathionate reductase complex subunit A complement(1464042..1467104) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247096.1 CDS STMDT12_C14000 NC_016860.1 1467097 1468119 R tetrathionate reductase complex subunit C complement(1467097..1468119) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247097.1 CDS STMDT12_C14010 NC_016860.1 1468120 1468854 R COG0437 Fe-S-cluster-containing hydrogenase components 1; tetrathionate reductase complex subunit B complement(1468120..1468854) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247098.1 CDS STMDT12_C14020 NC_016860.1 1469066 1470814 D COG0642 Signal transduction histidine kinase; sensor kinase 1469066..1470814 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247099.1 CDS STMDT12_C14030 NC_016860.1 1470789 1471409 D COG4566 Response regulator; response regulator 1470789..1471409 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247100.1 CDS STMDT12_C14040 NC_016860.1 1471507 1471719 D hypothetical protein 1471507..1471719 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247101.1 CDS STMDT12_C14050 NC_016860.1 1471815 1472774 R COG1683 Uncharacterized conserved protein; putative pathogenicity island protein complement(1471815..1472774) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247102.1 CDS STMDT12_C14060 NC_016860.1 1472947 1473675 R COG0789 Predicted transcriptional regulators; putative regulatory protein complement(1472947..1473675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247103.1 CDS STMDT12_C14070 NC_016860.1 1473854 1474492 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative two-component response regulator complement(1473854..1474492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247104.1 CDS STMDT12_C14080 NC_016860.1 1474523 1477285 R COG0642 Signal transduction histidine kinase; sensor kinase complement(1474523..1477285) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247105.1 CDS STMDT12_C14090 NC_016860.1 1477704 1478087 D secreted effector protein 1477704..1478087 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247106.1 CDS STMDT12_C14100 NC_016860.1 1478089 1479582 D COG1450 Type II secretory pathway, component PulD; type III secretion outer membrane pore, YscC/HrcC family 1478089..1479582 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247107.1 CDS STMDT12_C14110 NC_016860.1 1479563 1480774 D virulence protein 1479563..1480774 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247108.1 CDS STMDT12_C14120 NC_016860.1 1480782 1481024 D putative secretion system protein 1480782..1481024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247109.1 CDS STMDT12_C14130 NC_016860.1 1481288 1481614 D COG0078 Ornithine carbamoyltransferase; secretion system chaperone 1481288..1481614 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247110.1 CDS STMDT12_C14140 NC_016860.1 1481621 1482211 D putative pathogenicity island effector protein 1481621..1482211 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247111.1 CDS STMDT12_C14150 NC_016860.1 1482208 1482681 D COG0457 FOG: TPR repeat; secretion system chaperone 1482208..1482681 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247112.1 CDS STMDT12_C14160 NC_016860.1 1482684 1484138 D COG5613 Uncharacterized conserved protein; translocation machinery component 1482684..1484138 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247113.1 CDS STMDT12_C14170 NC_016860.1 1484238 1484741 D putative pathogenicity island effector protein 1484238..1484741 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247114.1 CDS STMDT12_C14180 NC_016860.1 1484744 1485160 D COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); putative pathogenicity island effector protein 1484744..1485160 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247115.1 CDS STMDT12_C14190 NC_016860.1 1485212 1485646 D COG0457 FOG: TPR repeat; type III secretion low calcium response chaperone LcrH/SycD 1485212..1485646 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247116.1 CDS STMDT12_C14200 NC_016860.1 1485662 1486444 D secreted effector protein 1485662..1486444 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247117.1 CDS STMDT12_C14210 NC_016860.1 1486441 1487130 D secreted effector protein 1486441..1487130 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247118.1 CDS STMDT12_C14220 NC_016860.1 1487224 1487439 D secretion system apparatus protein SsaG 1487224..1487439 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247119.1 CDS STMDT12_C14230 NC_016860.1 1487417 1487707 D type III secretion system protein, SsaH family 1487417..1487707 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247120.1 CDS STMDT12_C14240 NC_016860.1 1487704 1487967 D type III secretion system apparatus protein 1487704..1487967 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247121.1 CDS STMDT12_C14250 NC_016860.1 1487964 1488713 D COG4669 Type III secretory pathway, lipoprotein EscJ; needle complex inner membrane lipoprotein 1487964..1488713 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247122.1 CDS STMDT12_C14260 NC_016860.1 1488731 1489279 D putative pathogenicity island protein 1488731..1489279 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247123.1 CDS STMDT12_C14270 NC_016860.1 1489276 1489950 D type III secretion system apparatus protein 1489276..1489950 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247124.1 CDS STMDT12_C14280 NC_016860.1 1489940 1490932 D type III secretion system apparatus protein 1489940..1490932 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247125.1 CDS STMDT12_C14290 NC_016860.1 1490990 1491358 D putative pathogenicity island protein 1490990..1491358 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247126.1 CDS STMDT12_C14300 NC_016860.1 1491343 1493388 D COG4789 Type III secretory pathway, component EscV; secretion system apparatus protein SsaV 1491343..1493388 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247127.1 CDS STMDT12_C14310 NC_016860.1 1493378 1494679 D COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; type III secretion system ATPase 1493378..1494679 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247128.1 CDS STMDT12_C14320 NC_016860.1 1494682 1495059 D secretion system apparatus protein SsaO 1494682..1495059 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247129.1 CDS STMDT12_C14330 NC_016860.1 1495040 1495414 D putative type III secretion protein 1495040..1495414 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247130.1 CDS STMDT12_C14340 NC_016860.1 1495395 1496363 D COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein 1495395..1496363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247131.1 CDS STMDT12_C14350 NC_016860.1 1496431 1497078 D COG4790 Type III secretory pathway, component EscR; type III secretion system protein 1496431..1497078 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247132.1 CDS STMDT12_C14360 NC_016860.1 1497075 1497341 D COG4794 Type III secretory pathway, component EscS; putative type III secretion protein 1497075..1497341 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247133.1 CDS STMDT12_C14370 NC_016860.1 1497342 1498121 D COG4791 Type III secretory pathway, component EscT; putative type III secretion protein 1497342..1498121 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247134.1 CDS STMDT12_C14380 NC_016860.1 1498118 1499176 D COG4792 Type III secretory pathway, component EscU; secretion system apparatus protein SsaU 1498118..1499176 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247135.1 CDS STMDT12_C14390 NC_016860.1 1499649 1501022 R COG0534 Na+-driven multidrug efflux pump; multidrug efflux system protein complement(1499649..1501022) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247136.1 CDS STMDT12_C14400 NC_016860.1 1501239 1501880 D COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 1501239..1501880 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247137.1 CDS STMDT12_C14410 NC_016860.1 1501922 1503070 R COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane-fatty-acyl-phospholipid synthase complement(1501922..1503070) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247138.1 CDS STMDT12_C14420 NC_016860.1 1503360 1504565 R COG0477 Permeases of the major facilitator superfamily; inner membrane transport protein YdhC complement(1503360..1504565) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247139.1 CDS STMDT12_C14430 NC_016860.1 1504678 1505610 D COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator 1504678..1505610 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247140.1 CDS STMDT12_C14440 NC_016860.1 1505607 1506632 R COG1609 Transcriptional regulators; DNA-binding transcriptional repressor PurR complement(1505607..1506632) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247141.1 CDS STMDT12_C14450 NC_016860.1 1507100 1507681 R COG0605 Superoxide dismutase; superoxide dismutase complement(1507100..1507681) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247142.1 CDS STMDT12_C14460 NC_016860.1 1507808 1508629 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative cell wall-associated hydrolase complement(1507808..1508629) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247143.1 CDS STMDT12_C14470 NC_016860.1 1508964 1509311 D COG0278 Glutaredoxin-related protein; hypothetical protein 1508964..1509311 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247144.1 CDS STMDT12_C14480 NC_016860.1 1509389 1510036 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; ribonuclease T complement(1509389..1510036) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247145.1 CDS STMDT12_C14490 NC_016860.1 1510137 1510544 R COG0346 Lactoylglutathione lyase and related lyases; glyoxalase I complement(1510137..1510544) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247146.1 CDS STMDT12_C14500 NC_016860.1 1510613 1511710 R COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; N-ethylmaleimide reductase complement(1510613..1511710) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247147.1 CDS STMDT12_C14510 NC_016860.1 1511769 1512368 R COG1309 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(1511769..1512368) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247148.1 CDS STMDT12_C14520 NC_016860.1 1512471 1512710 D COG3313 Predicted Fe-S protein; putative oxidoreductase 1512471..1512710 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247149.1 CDS STMDT12_C14530 NC_016860.1 1512761 1513657 D COG4989 Predicted oxidoreductase; putative aldo/keto reductase 1512761..1513657 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247150.1 CDS STMDT12_C14540 NC_016860.1 1513737 1514258 D COG2032 Cu/Zn superoxide dismutase; superoxide dismutase 1513737..1514258 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247151.1 CDS STMDT12_C14550 NC_016860.1 1514234 1516273 R COG1289 Predicted membrane protein; putative inner membrane protein complement(1514234..1516273) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247152.1 CDS STMDT12_C14560 NC_016860.1 1516273 1517133 R COG1566 Multidrug resistance efflux pump; putative HlyD family protein complement(1516273..1517133) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247153.1 CDS STMDT12_C14570 NC_016860.1 1517136 1517372 R hypothetical protein complement(1517136..1517372) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247154.1 CDS STMDT12_C14580 NC_016860.1 1517573 1518007 D COG1846 Transcriptional regulators; transcriptional regulator SlyA 1517573..1518007 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247155.1 CDS STMDT12_C14590 NC_016860.1 1518055 1518522 R COG3133 Outer membrane lipoprotein; outer membrane lipoprotein Pcp complement(1518055..1518522) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247156.1 CDS anmK NC_016860.1 1518794 1519915 D COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases; anhydro-N-acetylmuramic acid kinase 1518794..1519915 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247157.1 CDS STMDT12_C14610 NC_016860.1 1520003 1520332 D COG3895 Predicted periplasmic protein; lysozyme inhibitor 1520003..1520332 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247158.1 CDS STMDT12_C14620 NC_016860.1 1520391 1521047 D COG0259 Pyridoxamine-phosphate oxidase; pyridoxamine 5'-phosphate oxidase 1520391..1521047 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247159.1 CDS STMDT12_C14630 NC_016860.1 1521174 1522448 D COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 1521174..1522448 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247160.1 CDS STMDT12_C14640 NC_016860.1 1522508 1523368 D COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal kinase 1522508..1523368 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247161.1 CDS gst NC_016860.1 1523427 1524032 R COG0625 Glutathione S-transferase; glutathionine S-transferase complement(1523427..1524032) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247162.1 CDS tppB NC_016860.1 1524137 1525642 R COG3104 Dipeptide/tripeptide permease; putative tripeptide transporter permease complement(1524137..1525642) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247163.1 CDS STMDT12_C14670 NC_016860.1 1526244 1526879 R COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(1526244..1526879) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247164.1 CDS STMDT12_C14680 NC_016860.1 1526879 1527571 R COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; electron transport complex protein RnfE complement(1526879..1527571) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247165.1 CDS rnfG NC_016860.1 1527574 1528194 R COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; electron transport complex protein RnfG complement(1527574..1528194) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247166.1 CDS rnfD NC_016860.1 1528198 1529256 R COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; electron transport complex protein RnfD complement(1528198..1529256) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247167.1 CDS rnfC NC_016860.1 1529257 1531464 R COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; electron transport complex protein RnfC complement(1529257..1531464) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247168.1 CDS rnfB NC_016860.1 1531457 1532035 R COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; electron transport complex protein RnfB complement(1531457..1532035) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247169.1 CDS rnfA NC_016860.1 1532035 1532616 R COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; electron transport complex protein RnfA complement(1532035..1532616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247170.1 CDS STMDT12_C14740 NC_016860.1 1532693 1533166 R hypothetical protein complement(1532693..1533166) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247171.1 CDS STMDT12_C14750 NC_016860.1 1533222 1533437 R oriC-binding nucleoid-associated protein complement(1533222..1533437) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247172.1 CDS STMDT12_C14760 NC_016860.1 1534068 1535108 D COG0673 Predicted dehydrogenases and related proteins; putative oxidoreductase 1534068..1535108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247173.1 CDS STMDT12_C14770 NC_016860.1 1535183 1536184 R COG1816 Adenosine deaminase; adenosine deaminase complement(1535183..1536184) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247174.1 CDS STMDT12_C14780 NC_016860.1 1536550 1536699 R COG1264 Phosphotransferase system IIB components; bifunctional maltose/glucose-specific PTS system IICB protein complement(1536550..1536699) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247175.1 CDS STMDT12_C14790 NC_016860.1 1536888 1538396 R COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1536888..1538396) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247176.1 CDS STMDT12_C14800 NC_016860.1 1538499 1539674 R COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase complement(1538499..1539674) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247177.1 CDS STMDT12_C14810 NC_016860.1 1539874 1541520 D COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase class I, anaerobic 1539874..1541520 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247178.1 CDS fumC NC_016860.1 1541688 1543091 D COG0114 Fumarase; fumarate hydratase 1541688..1543091 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247179.1 CDS STMDT12_C14830 NC_016860.1 1543088 1544017 R DNA replication terminus site-binding protein complement(1543088..1544017) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247180.1 CDS STMDT12_C14840 NC_016860.1 1544093 1545394 R COG0642 Signal transduction histidine kinase; sensor kinase RstB complement(1544093..1545394) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247181.1 CDS STMDT12_C14850 NC_016860.1 1545505 1547205 R COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold; hypothetical protein complement(1545505..1547205) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247182.1 CDS STMDT12_C14860 NC_016860.1 1547364 1548497 R COG3203 Outer membrane protein (porin); outer membrane protein complement(1547364..1548497) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247183.1 CDS STMDT12_C14870 NC_016860.1 1548614 1548799 D hypothetical protein 1548614..1548799 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247184.1 CDS STMDT12_C14880 NC_016860.1 1548977 1549708 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator RstA complement(1548977..1549708) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247185.1 CDS STMDT12_C14890 NC_016860.1 1549835 1550170 D COG3136 Uncharacterized membrane protein required for alginate biosynthesis; GlpM family protein 1549835..1550170 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247186.1 CDS STMDT12_C14900 NC_016860.1 1550232 1551614 R COG0531 Amino acid transporters; arginine/ornithine antiporter complement(1550232..1551614) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247187.1 CDS STMDT12_C14910 NC_016860.1 1551913 1552857 R protein YdgH complement(1551913..1552857) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247188.1 CDS pntA NC_016860.1 1553384 1554913 D COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha 1553384..1554913 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247189.1 CDS pntB NC_016860.1 1554924 1556312 D COG1282 NAD/NADP transhydrogenase beta subunit; pyridine nucleotide transhydrogenase 1554924..1556312 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247190.1 CDS tqsA NC_016860.1 1556487 1557521 R COG0628 Predicted permease; putative transport protein complement(1556487..1557521) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247191.1 CDS STMDT12_C14950 NC_016860.1 1557939 1558301 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtJ 1557939..1558301 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247192.1 CDS STMDT12_C14960 NC_016860.1 1558288 1558617 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtI 1558288..1558617 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247193.1 CDS STMDT12_C14970 NC_016860.1 1558657 1559478 R COG3591 V8-like Glu-specific endopeptidase; hypothetical protein complement(1558657..1559478) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247194.1 CDS STMDT12_C14980 NC_016860.1 1559747 1559995 R hypothetical protein complement(1559747..1559995) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247195.1 CDS STMDT12_C14990 NC_016860.1 1560231 1560323 D hypothetical protein 1560231..1560323 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247196.1 CDS STMDT12_C15000 NC_016860.1 1560390 1561643 R COG0477 Permeases of the major facilitator superfamily; putative membrane transport protein complement(1560390..1561643) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247197.1 CDS STMDT12_C15010 NC_016860.1 1561763 1562662 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 1561763..1562662 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247198.1 CDS STMDT12_C15020 NC_016860.1 1562790 1564010 D COG1940 Transcriptional regulator/sugar kinase; pts operon transcriptional repressor 1562790..1564010 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247199.1 CDS STMDT12_C15030 NC_016860.1 1564136 1564831 D COG0132 Dethiobiotin synthetase; putative dithiobiotin synthetase 1564136..1564831 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247200.1 CDS STMDT12_C15040 NC_016860.1 1564787 1566076 R COG0038 Chloride channel protein EriC; putative voltage-gated ClC-type chloride channel ClcB complement(1564787..1566076) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247201.1 CDS STMDT12_C15050 NC_016860.1 1566212 1567360 R COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; proline/glycine betaine transporter complement(1566212..1567360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247202.1 CDS STMDT12_C15060 NC_016860.1 1567360 1568007 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; ABC transporter permease complement(1567360..1568007) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247203.1 CDS STMDT12_C15070 NC_016860.1 1568017 1568919 R COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); putative ABC transporter substrate binding protein complement(1568017..1568919) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247204.1 CDS STMDT12_C15080 NC_016860.1 1568948 1569658 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; ABC transporter permease complement(1568948..1569658) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247205.1 CDS STMDT12_C15090 NC_016860.1 1569963 1570577 R COG3381 Uncharacterized component of anaerobic dehydrogenases; twin-argninine leader-binding protein DmsD complement(1569963..1570577) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247206.1 CDS STMDT12_C15100 NC_016860.1 1570620 1571477 R COG3302 DMSO reductase anchor subunit; putative dimethylsulfoxide reductase C subunit complement(1570620..1571477) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247207.1 CDS STMDT12_C15110 NC_016860.1 1571479 1572096 R COG0437 Fe-S-cluster-containing hydrogenase components 1; putative dimethylsulfoxide reductase B subunit complement(1571479..1572096) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247208.1 CDS STMDT12_C15120 NC_016860.1 1572107 1574542 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative dimethylsulfoxide reductase A subunit complement(1572107..1574542) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247209.1 CDS STMDT12_C15130 NC_016860.1 1574641 1577079 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a complement(1574641..1577079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247210.1 CDS STMDT12_C15140 NC_016860.1 1577236 1577541 R hypothetical protein complement(1577236..1577541) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247211.1 CDS STMDT12_C15150 NC_016860.1 1577648 1578358 D hypothetical protein 1577648..1578358 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247212.1 CDS STMDT12_C15160 NC_016860.1 1578399 1578959 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; spermidine N1-acetyltransferase complement(1578399..1578959) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247213.1 CDS STMDT12_C15170 NC_016860.1 1578995 1579336 R hypothetical protein complement(1578995..1579336) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247214.1 CDS STMDT12_C15180 NC_016860.1 1579489 1579815 D COG1742 Uncharacterized conserved protein; hypothetical protein 1579489..1579815 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247215.1 CDS STMDT12_C15190 NC_016860.1 1579937 1581151 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative dehydratase 1579937..1581151 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247216.1 CDS STMDT12_C15200 NC_016860.1 1581162 1582181 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative dehydrogenase 1581162..1582181 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247217.1 CDS STMDT12_C15210 NC_016860.1 1582274 1583212 D COG0477 Permeases of the major facilitator superfamily; putative frameshift mutation; inner membrane metabolite transport protein YdfJ 1582274..1583212 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247218.1 CDS STMDT12_C15220 NC_016860.1 1583216 1583614 D COG0477 Permeases of the major facilitator superfamily; putative frameshift mutation; inner membrane metabolite transport protein YdfJ 1583216..1583614 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247219.1 CDS STMDT12_C15230 NC_016860.1 1583758 1585224 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative mannitol dehydrogenase 1583758..1585224 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247220.1 CDS STMDT12_C15240 NC_016860.1 1585291 1585494 R hypothetical protein complement(1585291..1585494) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247221.1 CDS STMDT12_C15250 NC_016860.1 1585675 1586361 R COG1802 Transcriptional regulators; GntR family transcriptional regulator complement(1585675..1586361) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247222.1 CDS STMDT12_C15260 NC_016860.1 1586491 1587237 R COG4221 Short-chain alcohol dehydrogenase of unknown specificity; 3-hydroxy acid dehydrogenase complement(1586491..1587237) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247223.1 CDS STMDT12_C15270 NC_016860.1 1587376 1589418 D COG0339 Zn-dependent oligopeptidases; dipeptidyl carboxypeptidase II 1587376..1589418 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247224.1 CDS STMDT12_C15280 NC_016860.1 1589763 1589945 D COG3729 General stress protein; putative cytoplasmic protein 1589763..1589945 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247225.1 CDS STMDT12_C15290 NC_016860.1 1590065 1590592 R COG1546 Uncharacterized protein (competence- and mitomycin-induced); competence damage-inducible protein A complement(1590065..1590592) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247226.1 CDS STMDT12_C15300 NC_016860.1 1591019 1591411 D COG3111 Uncharacterized conserved protein; hypothetical protein 1591019..1591411 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247227.1 CDS STMDT12_C15310 NC_016860.1 1591761 1591856 R hypothetical protein complement(1591761..1591856) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247228.1 CDS STMDT12_C15320 NC_016860.1 1592104 1593291 R COG0477 Permeases of the major facilitator superfamily; putative major facilitator family transporter YdeE complement(1592104..1593291) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247229.1 CDS STMDT12_C15330 NC_016860.1 1593522 1594421 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; O-acetylserine/cysteine export protein 1593522..1594421 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247230.1 CDS STMDT12_C15340 NC_016860.1 1594540 1594755 R hypothetical protein complement(1594540..1594755) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247231.1 CDS STMDT12_C15350 NC_016860.1 1594784 1595167 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator MarA complement(1594784..1595167) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247232.1 CDS STMDT12_C15360 NC_016860.1 1595187 1595621 R COG1846 Transcriptional regulators; DNA-binding transcriptional repressor MarR complement(1595187..1595621) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247233.1 CDS STMDT12_C15370 NC_016860.1 1595880 1596545 D COG2095 Multiple antibiotic transporter; multiple drug resistance protein MarC 1595880..1596545 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247234.1 CDS STMDT12_C15380 NC_016860.1 1596592 1597782 R COG2814 Arabinose efflux permease; sugar efflux transporter complement(1596592..1597782) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247235.1 CDS STMDT12_C15390 NC_016860.1 1597898 1598770 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1597898..1598770) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247236.1 CDS STMDT12_C15400 NC_016860.1 1598873 1600261 D COG1012 NAD-dependent aldehyde dehydrogenases; putative succinate-semialdehyde dehydrogenase 1598873..1600261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247237.1 CDS STMDT12_C15410 NC_016860.1 1600346 1601260 D COG2066 Glutaminase; glutaminase 1600346..1601260 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247238.1 CDS STMDT12_C15420 NC_016860.1 1601260 1601619 D putative cytoplasmic protein 1601260..1601619 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247239.1 CDS STMDT12_C15430 NC_016860.1 1601843 1602790 D COG3781 Predicted membrane protein; putative inner membrane protein 1601843..1602790 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247240.1 CDS STMDT12_C15440 NC_016860.1 1602846 1603373 R hypothetical protein complement(1602846..1603373) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247241.1 CDS STMDT12_C15450 NC_016860.1 1604105 1605223 D COG3203 Outer membrane protein (porin); putative outer membrane protein 1604105..1605223 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247242.1 CDS STMDT12_C15460 NC_016860.1 1605364 1605705 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HypA complement(1605364..1605705) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247243.1 CDS STMDT12_C15470 NC_016860.1 1605718 1606605 R COG0374 Ni,Fe-hydrogenase I large subunit; hypothetical protein complement(1605718..1606605) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247244.1 CDS STMDT12_C15480 NC_016860.1 1606593 1607654 R COG1773 Rubredoxin; hydrogenase 1 operon protein HyaF2 complement(1606593..1607654) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247245.1 CDS STMDT12_C15490 NC_016860.1 1607660 1608082 R COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase 1 operon protein HyaE2 complement(1607660..1608082) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247246.1 CDS STMDT12_C15500 NC_016860.1 1608079 1608378 R hydrogenase assembly chaperone HypC/HupF complement(1608079..1608378) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247247.1 CDS STMDT12_C15510 NC_016860.1 1608378 1608986 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease complement(1608378..1608986) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247248.1 CDS STMDT12_C15520 NC_016860.1 1608992 1609735 R COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase B-type cytochrome subunit complement(1608992..1609735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247249.1 CDS STMDT12_C15530 NC_016860.1 1609686 1611488 R COG0374 Ni,Fe-hydrogenase I large subunit; Ni/Fe-hydrogenase large subunit complement(1609686..1611488) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247250.1 CDS STMDT12_C15540 NC_016860.1 1611491 1612594 R COG1740 Ni,Fe-hydrogenase I small subunit; uptake hydrogenase small subunit complement(1611491..1612594) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247251.1 CDS STMDT12_C15550 NC_016860.1 1612722 1612874 R hypothetical protein complement(1612722..1612874) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247252.1 CDS STMDT12_C15560 NC_016860.1 1613023 1614114 D COG3049 Penicillin V acylase and related amidases; putative hydrolase 1613023..1614114 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247253.1 CDS STMDT12_C15570 NC_016860.1 1614280 1614951 D COG2186 Transcriptional regulators; putative regulatory protein 1614280..1614951 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247254.1 CDS STMDT12_C15580 NC_016860.1 1615010 1616035 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative alcohol dehydrogenase complement(1615010..1616035) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247255.1 CDS STMDT12_C15590 NC_016860.1 1616010 1617296 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(1616010..1617296) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247256.1 CDS STMDT12_C15600 NC_016860.1 1617473 1619029 R COG4287 PhoPQ-activated pathogenicity-related protein; PhoPQ-regulated protein complement(1617473..1619029) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247257.1 CDS STMDT12_C15610 NC_016860.1 1619099 1620340 R COG0477 Permeases of the major facilitator superfamily; putative multidrug efflux protein complement(1619099..1620340) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247258.1 CDS STMDT12_C15620 NC_016860.1 1620330 1621838 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; hypothetical protein complement(1620330..1621838) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247259.1 CDS STMDT12_C15630 NC_016860.1 1621883 1622371 D COG1846 Transcriptional regulators; putative transcriptional regulator 1621883..1622371 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247260.1 CDS STMDT12_C15640 NC_016860.1 1622564 1623643 D COG0809 S-adenosylmethionine:tRNA- ribosyltransferase-isomerase (queuine synthetase); putative S-adenosylmethionine:tRNA- ribosyltransferase-isomerase 1622564..1623643 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247261.1 CDS STMDT12_C15650 NC_016860.1 1623695 1624084 R COG0251 Putative translation initiation inhibitor, yjgF family; endoribonuclease L-PSP family protein complement(1623695..1624084) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247262.1 CDS STMDT12_C15660 NC_016860.1 1624255 1624539 R COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; putative stability protein StbE complement(1624255..1624539) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247263.1 CDS STMDT12_C15670 NC_016860.1 1624529 1624777 R COG2161 Antitoxin of toxin-antitoxin stability system; putative stability protein StbD complement(1624529..1624777) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247264.1 CDS STMDT12_C15680 NC_016860.1 1625134 1625466 D hypothetical protein 1625134..1625466 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247265.1 CDS STMDT12_C15690 NC_016860.1 1625588 1626517 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); putative cytoplasmic protein 1625588..1626517 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247266.1 CDS STMDT12_C15700 NC_016860.1 1626925 1627278 R COG2801 Transposase and inactivated derivatives; putative transposase complement(1626925..1627278) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247267.1 CDS STMDT12_C15710 NC_016860.1 1627606 1627716 R hypothetical protein complement(1627606..1627716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247268.1 CDS STMDT12_C15720 NC_016860.1 1627616 1627825 R hypothetical protein complement(1627616..1627825) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247269.1 CDS STMDT12_C15730 NC_016860.1 1628095 1629558 R putative coiled-coil protein complement(1628095..1629558) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247270.1 CDS STMDT12_C15740 NC_016860.1 1629820 1630827 D COG1609 Transcriptional regulators; HTH-type transcriptional regulator GalR 1629820..1630827 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247271.1 CDS STMDT12_C15750 NC_016860.1 1630971 1632422 D COG1757 Na+/H+ antiporter; Na+/H+ antiporter NhaC 1630971..1632422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247272.1 CDS STMDT12_C15760 NC_016860.1 1632435 1633637 D COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; putative aminotransferase 1632435..1633637 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247273.1 CDS STMDT12_C15770 NC_016860.1 1633750 1635825 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; putative glycosyl hydrolase complement(1633750..1635825) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247274.1 CDS STMDT12_C15780 NC_016860.1 1635882 1638410 R COG3280 Maltooligosyl trehalose synthase; putative glycosyl hydrolase complement(1635882..1638410) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247275.1 CDS STMDT12_C15790 NC_016860.1 1638407 1640191 R COG0296 1,4-alpha-glucan branching enzyme; putative alpha amylase complement(1638407..1640191) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247276.1 CDS STMDT12_C15800 NC_016860.1 1640320 1641105 R hypothetical protein complement(1640320..1641105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247277.1 CDS hdeB NC_016860.1 1641248 1641577 R acid-resistance protein complement(1641248..1641577) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247278.1 CDS STMDT12_C15820 NC_016860.1 1641927 1642358 R COG1764 Predicted redox protein, regulator of disulfide bond formation; osmotically inducible, stress-inducible membrane protein complement(1641927..1642358) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247279.1 CDS STMDT12_C15830 NC_016860.1 1642871 1643086 D biofilm-dependent modulation protein 1642871..1643086 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247280.1 CDS rpsV NC_016860.1 1643181 1643324 D 30S ribosomal protein S22 1643181..1643324 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247281.1 CDS STMDT12_C15850 NC_016860.1 1643501 1645198 D COG0281 Malic enzyme; malate dehydrogenase 1643501..1645198 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247282.1 CDS STMDT12_C15860 NC_016860.1 1645484 1646494 D COG1064 Zn-dependent alcohol dehydrogenases; alcohol dehydrogenase 1645484..1646494 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247283.1 CDS STMDT12_C15870 NC_016860.1 1646585 1647241 R COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-N gamma subunit complement(1646585..1647241) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247284.1 CDS STMDT12_C15880 NC_016860.1 1647234 1648118 R COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-N beta subunit complement(1647234..1648118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247285.1 CDS STMDT12_C15890 NC_016860.1 1648132 1651179 R formate dehydrogenase-N alpha subunit complement(1648132..1651179) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247286.1 CDS STMDT12_C15900 NC_016860.1 1651514 1652338 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 1651514..1652338 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247287.1 CDS STMDT12_C15910 NC_016860.1 1652863 1653951 D COG3203 Outer membrane protein (porin); outer membrane porin LC 1652863..1653951 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247288.1 CDS STMDT12_C15920 NC_016860.1 1654035 1654475 D COG3791 Uncharacterized conserved protein; glutathione-dependent formaldehyde-activating protein 1654035..1654475 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247289.1 CDS STMDT12_C15930 NC_016860.1 1654500 1655987 R COG0477 Permeases of the major facilitator superfamily; methyl viologen resistance protein SmvA complement(1654500..1655987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247290.1 CDS STMDT12_C15940 NC_016860.1 1656105 1656683 D COG1309 Transcriptional regulator; putative transcriptional regulator 1656105..1656683 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247291.1 CDS STMDT12_C15950 NC_016860.1 1656898 1658286 D COG2223 Nitrate/nitrite transporter; nitrite extrusion protein 2 1656898..1658286 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247292.1 CDS STMDT12_C15960 NC_016860.1 1658378 1662118 D COG5013 Nitrate reductase alpha subunit; nitrate reductase 2 alpha subunit 1658378..1662118 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247293.1 CDS STMDT12_C15970 NC_016860.1 1662115 1663659 D COG1140 Nitrate reductase beta subunit; hypothetical protein 1662115..1663659 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247294.1 CDS STMDT12_C15980 NC_016860.1 1663659 1664354 D COG2180 Nitrate reductase delta subunit; nitrate reductase 2 delta subunit 1663659..1664354 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247295.1 CDS STMDT12_C15990 NC_016860.1 1664351 1665031 D COG2181 Nitrate reductase gamma subunit; nitrate reductase 2 gamma subunit 1664351..1665031 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247296.1 CDS STMDT12_C16000 NC_016860.1 1665137 1666030 D COG0384 Predicted epimerase, PhzC/PhzF homolog; hypothetical protein 1665137..1666030 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247297.1 CDS STMDT12_C16010 NC_016860.1 1666066 1666911 R COG2162 Arylamine N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase complement(1666066..1666911) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247298.1 CDS STMDT12_C16020 NC_016860.1 1667195 1667827 R putative cytoplasmic protein complement(1667195..1667827) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247299.1 CDS STMDT12_C16030 NC_016860.1 1668340 1669833 D COG1113 Gamma-aminobutyrate permease and related permeases; L-asparagine permease 1668340..1669833 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247300.1 CDS STMDT12_C16040 NC_016860.1 1669910 1670131 R hypothetical protein complement(1669910..1670131) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247301.1 CDS STMDT12_C16050 NC_016860.1 1670276 1671337 R COG3391 Uncharacterized conserved protein; putative ATP-binding protein complement(1670276..1671337) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247302.1 CDS STMDT12_C16060 NC_016860.1 1671556 1673721 D COG1629 Outer membrane receptor proteins, mostly Fe transport; hypothetical protein 1671556..1673721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247303.1 CDS STMDT12_C16070 NC_016860.1 1673788 1674453 R COG1802 Transcriptional regulators; putative DNA-binding transcriptional regulator complement(1673788..1674453) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247304.1 CDS STMDT12_C16080 NC_016860.1 1674787 1675824 R COG2130 Putative NADP-dependent oxidoreductases; putative NADP-dependent oxidoreductase complement(1674787..1675824) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247305.1 CDS STMDT12_C16090 NC_016860.1 1676036 1676551 D COG1247 Sortase and related acyltransferases; putative acetyltransferase 1676036..1676551 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247306.1 CDS STMDT12_C16100 NC_016860.1 1676551 1677000 D COG3238 Uncharacterized protein conserved in bacteria; inner membrane protein YdcZ 1676551..1677000 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247307.1 CDS STMDT12_C16110 NC_016860.1 1677005 1677238 R putative cytoplasmic protein complement(1677005..1677238) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247308.1 CDS STMDT12_C16120 NC_016860.1 1677462 1678781 D putative virulence protein 1677462..1678781 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247309.1 CDS STMDT12_C16130 NC_016860.1 1678786 1681767 D COG4457 Uncharacterized protein conserved in bacteria, putative virulence factor; putative virulence protein 1678786..1681767 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247310.1 CDS STMDT12_C16140 NC_016860.1 1681764 1683908 D COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor; putative virulence protein 1681764..1683908 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247311.1 CDS STMDT12_C16150 NC_016860.1 1683953 1684126 R putative inner membrane protein complement(1683953..1684126) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247312.1 CDS STMDT12_C16160 NC_016860.1 1684325 1684420 D hypothetical protein 1684325..1684420 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247313.1 CDS STMDT12_C16170 NC_016860.1 1684525 1685970 R COG1012 NAD-dependent aldehyde dehydrogenases; gamma-aminobutyraldehyde dehydrogenase complement(1684525..1685970) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247314.1 CDS STMDT12_C16180 NC_016860.1 1686085 1687509 R COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; aminotransferase, classes I and II superfamily protein complement(1686085..1687509) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247315.1 CDS STMDT12_C16190 NC_016860.1 1687645 1688415 R COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase complement(1687645..1688415) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247316.1 CDS STMDT12_C16200 NC_016860.1 1688937 1689335 R hypothetical protein complement(1688937..1689335) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247317.1 CDS sifB NC_016860.1 1689872 1690822 D secreted effector protein 1689872..1690822 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247318.1 CDS STMDT12_C16220 NC_016860.1 1691096 1691326 D hypothetical protein 1691096..1691326 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247319.1 CDS STMDT12_C16230 NC_016860.1 1691327 1693291 R COG0826 Collagenase and related proteases; peptidase U32 family protein complement(1691327..1693291) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247320.1 CDS STMDT12_C16240 NC_016860.1 1693370 1693906 R COG1396 Predicted transcriptional regulators; putative repressor protein complement(1693370..1693906) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247321.1 CDS STMDT12_C16250 NC_016860.1 1693997 1695175 D COG3135 Uncharacterized protein involved in benzoate metabolism; benzoate transporter 1693997..1695175 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247322.1 CDS STMDT12_C16260 NC_016860.1 1695229 1695897 R putative lipoprotein complement(1695229..1695897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247323.1 CDS STMDT12_C16270 NC_016860.1 1696053 1696649 R COG0500 SAM-dependent methyltransferases; tellurite resistance protein TehB complement(1696053..1696649) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247324.1 CDS STMDT12_C16280 NC_016860.1 1696636 1697649 R COG1275 Tellurite resistance protein and related permeases; potassium-tellurite ethidium and proflavin transporter complement(1696636..1697649) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247325.1 CDS STMDT12_C16290 NC_016860.1 1697756 1698736 D putative nucleoside-diphosphate-sugar pyrophosphorylase 1697756..1698736 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247326.1 CDS STMDT12_C16300 NC_016860.1 1698733 1699272 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-L7/L12-serine acetyltransferase complement(1698733..1699272) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247327.1 CDS STMDT12_C16310 NC_016860.1 1699489 1700607 D COG1363 Cellulase M and related proteins; putative cellulase protein 1699489..1700607 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247328.1 CDS STMDT12_C16320 NC_016860.1 1700604 1700885 D COG3414 Phosphotransferase system, galactitol-specific IIB component; lactose/cellobiose-specific PTS system IIB protein 1700604..1700885 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247329.1 CDS STMDT12_C16330 NC_016860.1 1700896 1702209 D COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system IIC protein 1700896..1702209 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247330.1 CDS STMDT12_C16340 NC_016860.1 1702223 1703029 D COG0434 Predicted TIM-barrel enzyme; hypothetical protein 1702223..1703029 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247331.1 CDS STMDT12_C16350 NC_016860.1 1703161 1703598 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system EIIA protein 1703161..1703598 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247332.1 CDS STMDT12_C16360 NC_016860.1 1703610 1704242 D COG0036 Pentose-5-phosphate-3-epimerase; epimerase 1703610..1704242 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247333.1 CDS STMDT12_C16370 NC_016860.1 1704252 1705049 D COG1349 Transcriptional regulators of sugar metabolism; putative regulatory protein 1704252..1705049 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247334.1 CDS STMDT12_C16380 NC_016860.1 1705049 1705486 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoglycoside 6'-N-acetyltransferase 1705049..1705486 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247335.1 CDS STMDT12_C16390 NC_016860.1 1705533 1706735 R COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; putative oxidase complement(1705533..1706735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247336.1 CDS STMDT12_C16400 NC_016860.1 1706747 1707313 R COG2353 Uncharacterized conserved protein; hypothetical protein complement(1706747..1707313) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247337.1 CDS mdoD NC_016860.1 1707518 1709137 R COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein D complement(1707518..1709137) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247338.1 CDS STMDT12_C16420 NC_016860.1 1709393 1710901 R COG2272 Carboxylesterase type B; carboxylesterase type B complement(1709393..1710901) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247339.1 CDS STMDT12_C16430 NC_016860.1 1710950 1712293 R COG5383 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(1710950..1712293) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247340.1 CDS STMDT12_C16440 NC_016860.1 1712586 1713509 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 1712586..1713509 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247341.1 CDS STMDT12_C16450 NC_016860.1 1713570 1715195 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein III complement(1713570..1715195) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247342.1 CDS STMDT12_C16460 NC_016860.1 1715364 1716482 R COG1062 Zn-dependent alcohol dehydrogenases, class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(1715364..1716482) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247343.1 CDS STMDT12_C16470 NC_016860.1 1716514 1716789 R COG1937 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(1716514..1716789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247344.1 CDS STMDT12_C16480 NC_016860.1 1717552 1717677 R hypothetical protein complement(1717552..1717677) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247345.1 CDS STMDT12_C16490 NC_016860.1 1717842 1718558 R putative inner membrane protein complement(1717842..1718558) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247346.1 CDS STMDT12_C16500 NC_016860.1 1718984 1720210 D COG3240 Phospholipase/lecithinase/hemolysin; secreted effector protein 1718984..1720210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247347.1 CDS STMDT12_C16510 NC_016860.1 1720331 1720675 R COG3326 Predicted membrane protein; hypothetical protein complement(1720331..1720675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247348.1 CDS STMDT12_C16520 NC_016860.1 1721582 1722343 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; putative periplasmic amino acid-binding protein 1721582..1722343 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247349.1 CDS STMDT12_C16530 NC_016860.1 1722350 1722997 D COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 1722350..1722997 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247350.1 CDS STMDT12_C16540 NC_016860.1 1723022 1723753 D COG1126 ABC-type polar amino acid transport system, ATPase component; phosphate ABC transporter ATP-binding protein 1723022..1723753 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247351.1 CDS STMDT12_C16550 NC_016860.1 1723750 1724430 D COG0765 ABC-type amino acid transport system, permease component; ABC transporter permease 1723750..1724430 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247352.1 CDS STMDT12_C16560 NC_016860.1 1724567 1726117 D COG5305 Predicted membrane protein; putative inner membrane protein 1724567..1726117 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247353.1 CDS STMDT12_C16570 NC_016860.1 1726118 1726213 R hypothetical protein complement(1726118..1726213) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247354.1 CDS STMDT12_C16580 NC_016860.1 1726581 1727243 D COG0500 SAM-dependent methyltransferases; methyltransferase 1726581..1727243 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247355.1 CDS STMDT12_C16590 NC_016860.1 1727514 1728044 R COG3038 Cytochrome B561; cytochrome b561 complement(1727514..1728044) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247356.1 CDS STMDT12_C16600 NC_016860.1 1728161 1728961 R COG1434 Uncharacterized conserved protein; protein YdcF complement(1728161..1728961) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247357.1 CDS STMDT12_C16610 NC_016860.1 1729025 1732927 R COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpA complement(1729025..1732927) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247358.1 CDS STMDT12_C16620 NC_016860.1 1733128 1733733 D COG1182 Acyl carrier protein phosphodiesterase; azoreductase 1733128..1733733 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247359.1 CDS STMDT12_C16630 NC_016860.1 1733730 1734179 R COG3791 Uncharacterized conserved protein; putative inner membrane protein complement(1733730..1734179) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247360.1 CDS STMDT12_C16640 NC_016860.1 1734322 1734645 R COG3784 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1734322..1734645) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247361.1 CDS STMDT12_C16650 NC_016860.1 1734653 1734844 R hypothetical protein complement(1734653..1734844) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247362.1 CDS STMDT12_C16660 NC_016860.1 1734844 1737480 R hypothetical protein complement(1734844..1737480) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247363.1 CDS STMDT12_C16670 NC_016860.1 1737720 1738709 D COG1052 Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 1737720..1738709 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247364.1 CDS STMDT12_C16680 NC_016860.1 1738820 1739230 D COG3187 Heat shock protein; heat-inducible protein 1738820..1739230 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247365.1 CDS STMDT12_C16690 NC_016860.1 1739274 1739540 R COG3042 Putative hemolysin; putative cytoplasmic protein complement(1739274..1739540) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247366.1 CDS STMDT12_C16700 NC_016860.1 1739816 1743340 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; putative pyruvate-flavodoxin oxidoreductase 1739816..1743340 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247367.1 CDS STMDT12_C16710 NC_016860.1 1743399 1743608 R hypothetical protein complement(1743399..1743608) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247368.1 CDS STMDT12_C16720 NC_016860.1 1743822 1744256 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspF 1743822..1744256 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247369.1 CDS STMDT12_C16730 NC_016860.1 1744306 1744644 R COG2076 Membrane transporters of cations and cationic drugs; putative multidrug transporter complement(1744306..1744644) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247370.1 CDS STMDT12_C16740 NC_016860.1 1744637 1744789 R hypothetical protein complement(1744637..1744789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247371.1 CDS STMDT12_C16750 NC_016860.1 1744808 1744948 D COG0582 Integrase; putative integrase 1744808..1744948 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247372.1 CDS STMDT12_C16760 NC_016860.1 1745000 1745935 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; C32 tRNA thiolase 1745000..1745935 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247373.1 CDS STMDT12_C16770 NC_016860.1 1745979 1747352 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DbpA complement(1745979..1747352) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247374.1 CDS zntB NC_016860.1 1747839 1748822 R COG0598 Mg2+ and Co2+ transporters; zinc transporter ZntB complement(1747839..1748822) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247375.1 CDS STMDT12_C16790 NC_016860.1 1748968 1750080 R COG0840 Methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis protein complement(1748968..1750080) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247376.1 CDS STMDT12_C16800 NC_016860.1 1750533 1751096 R COG2840 Uncharacterized protein conserved in bacteria; SMR domain protein complement(1750533..1751096) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247377.1 CDS STMDT12_C16810 NC_016860.1 1751354 1751869 D COG0350 Methylated DNA-protein cysteine methyltransferase; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1751354..1751869 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247378.1 CDS STMDT12_C16820 NC_016860.1 1752065 1752817 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; fumarate/nitrate reduction transcriptional regulator 1752065..1752817 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247379.1 CDS STMDT12_C16830 NC_016860.1 1752968 1753915 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspE 1752968..1753915 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247380.1 CDS STMDT12_C16840 NC_016860.1 1753970 1754224 R hypothetical protein complement(1753970..1754224) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247381.1 CDS STMDT12_C16850 NC_016860.1 1754463 1755494 D COG0668 Small-conductance mechanosensitive channel; MscS family inner membrane protein ynaI 1754463..1755494 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247382.1 CDS STMDT12_C16860 NC_016860.1 1755580 1756182 R COG1396 Predicted transcriptional regulators; putative transcriptional regulator complement(1755580..1756182) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247383.1 CDS STMDT12_C16870 NC_016860.1 1756226 1756912 D COG3382 Uncharacterized conserved protein; putative cytoplasmic protein 1756226..1756912 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247384.1 CDS STMDT12_C16880 NC_016860.1 1757054 1757278 D hypothetical protein 1757054..1757278 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247385.1 CDS STMDT12_C16890 NC_016860.1 1757384 1757902 R COG2077 Peroxiredoxin; putative thiol peroxidase complement(1757384..1757902) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247386.1 CDS STMDT12_C16900 NC_016860.1 1758040 1758864 R hypothetical protein complement(1758040..1758864) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247387.1 CDS STMDT12_C16910 NC_016860.1 1758891 1760873 R invasin-like protein complement(1758891..1760873) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247388.1 CDS STMDT12_C16920 NC_016860.1 1760948 1761793 R putative lipoprotein complement(1760948..1761793) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247389.1 CDS STMDT12_C16930 NC_016860.1 1762093 1762944 D COG2207 AraC-type DNA-binding domain-containing proteins; putative regulatory protein 1762093..1762944 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247390.1 CDS STMDT12_C16940 NC_016860.1 1763335 1764444 D putative cytoplasmic protein 1763335..1764444 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247391.1 CDS STMDT12_C16950 NC_016860.1 1764658 1764894 R putative outer membrane lipoprotein complement(1764658..1764894) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247392.1 CDS STMDT12_C16960 NC_016860.1 1765023 1765613 R COG1309 Transcriptional regulator; putative transcriptional regulator complement(1765023..1765613) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247393.1 CDS STMDT12_C16970 NC_016860.1 1765691 1766404 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 1765691..1766404 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247394.1 CDS STMDT12_C16980 NC_016860.1 1766495 1767364 R COG0656 Aldo/keto reductases, related to diketogulonate reductase; putative aldo/keto reductase complement(1766495..1767364) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247395.1 CDS STMDT12_C16990 NC_016860.1 1767638 1768543 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(1767638..1768543) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247396.1 CDS STMDT12_C17000 NC_016860.1 1768662 1769591 D putative 2'-hydroxyisoflavone reductase 1768662..1769591 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247397.1 CDS STMDT12_C17010 NC_016860.1 1769688 1771301 R COG4166 ABC-type oligopeptide transport system, periplasmic component; periplasmic murein tripeptide transport protein complement(1769688..1771301) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247398.1 CDS STMDT12_C17020 NC_016860.1 1771491 1772219 D COG3608 Predicted deacylase; murein peptide amidase A 1771491..1772219 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247399.1 CDS STMDT12_C17030 NC_016860.1 1772194 1773159 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative chloromuconate cycloisomerase complement(1772194..1773159) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247400.1 CDS tpx NC_016860.1 1773275 1773781 D COG2077 Peroxiredoxin; thiol peroxidase 1773275..1773781 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247401.1 CDS STMDT12_C17050 NC_016860.1 1773871 1775412 R COG3283 Transcriptional regulator of aromatic amino acids metabolism; DNA-binding transcriptional regulator TyrR complement(1773871..1775412) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247402.1 CDS STMDT12_C17060 NC_016860.1 1775560 1776621 R COG3768 Predicted membrane protein; hypothetical protein complement(1775560..1776621) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247403.1 CDS STMDT12_C17070 NC_016860.1 1776618 1778015 R COG3106 Predicted ATPase; putative ATPase complement(1776618..1778015) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247404.1 CDS STMDT12_C17080 NC_016860.1 1778164 1778478 R COG0607 Rhodanese-related sulfurtransferase; thiosulfate:cyanide sulfurtransferase complement(1778164..1778478) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247405.1 CDS STMDT12_C17090 NC_016860.1 1778554 1778772 R phage shock protein D complement(1778554..1778772) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247406.1 CDS STMDT12_C17100 NC_016860.1 1778795 1779154 R COG1983 Putative stress-responsive transcriptional regulator; DNA-binding transcriptional activator PspC complement(1778795..1779154) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247407.1 CDS pspB NC_016860.1 1779154 1779378 R phage shock protein B complement(1779154..1779378) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247408.1 CDS STMDT12_C17120 NC_016860.1 1779438 1780106 R COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein PspA complement(1779438..1780106) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247409.1 CDS pspF NC_016860.1 1780277 1781257 D COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; phage shock protein operon transcriptional activator 1780277..1781257 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247410.1 CDS STMDT12_C17140 NC_016860.1 1781369 1783018 D COG4166 ABC-type oligopeptide transport system, periplasmic component; peptide ABC transporter substrate binding protein SapA 1781369..1783018 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247411.1 CDS STMDT12_C17150 NC_016860.1 1783015 1783980 D COG4168 ABC-type antimicrobial peptide transport system, permease component; peptide ABC transporter permease protein SapB 1783015..1783980 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247412.1 CDS STMDT12_C17160 NC_016860.1 1783967 1784857 D COG4171 ABC-type antimicrobial peptide transport system, permease component; hypothetical protein 1783967..1784857 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247413.1 CDS STMDT12_C17170 NC_016860.1 1784857 1785849 D COG4170 ABC-type antimicrobial peptide transport system, ATPase component; peptide ABC transporter ATP-binding protein 1784857..1785849 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247414.1 CDS STMDT12_C17180 NC_016860.1 1785851 1786657 D COG4167 ABC-type antimicrobial peptide transport system, ATPase component; peptide ABC transporter ATP-binding protein SapF 1785851..1786657 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247415.1 CDS STMDT12_C17190 NC_016860.1 1786786 1787382 R COG2200 FOG: EAL domain; hypothetical protein complement(1786786..1787382) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247416.1 CDS STMDT12_C17200 NC_016860.1 1787848 1789221 R putative inner membrane protein complement(1787848..1789221) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247417.1 CDS fabI NC_016860.1 1789827 1790615 D COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl carrier protein) reductase 1789827..1790615 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247418.1 CDS STMDT12_C17220 NC_016860.1 1790815 1791795 D COG4950 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 1790815..1791795 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247419.1 CDS STMDT12_C17230 NC_016860.1 1792037 1793971 D COG4776 Exoribonuclease II; exoribonuclease II 1792037..1793971 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247420.1 CDS STMDT12_C17240 NC_016860.1 1794233 1796215 D COG2199 FOG: GGDEF domain; RNase II stability modulator 1794233..1796215 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247421.1 CDS STMDT12_C17250 NC_016860.1 1796337 1796516 D hypothetical protein 1796337..1796516 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247422.1 CDS STMDT12_C17260 NC_016860.1 1796603 1797355 D COG1349 Transcriptional regulators of sugar metabolism; DeoR-family transcriptional regulator 1796603..1797355 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247423.1 CDS STMDT12_C17270 NC_016860.1 1797614 1797832 D lipoprotein 1797614..1797832 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247424.1 CDS STMDT12_C17280 NC_016860.1 1797952 1798278 R COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins; translation initiation factor Sui1 complement(1797952..1798278) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247425.1 CDS STMDT12_C17290 NC_016860.1 1798278 1799015 R COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1798278..1799015) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247426.1 CDS STMDT12_C17300 NC_016860.1 1799206 1800375 R COG2956 Predicted N-acetylglucosaminyl transferase; tetratricopeptide repeat protein complement(1799206..1800375) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247427.1 CDS STMDT12_C17310 NC_016860.1 1800382 1800690 R COG3771 Predicted membrane protein; hypothetical protein complement(1800382..1800690) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247428.1 CDS STMDT12_C17320 NC_016860.1 1800840 1801604 R COG0671 Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B complement(1800840..1801604) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247429.1 CDS ribA NC_016860.1 1801800 1802390 D COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 1801800..1802390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247430.1 CDS STMDT12_C17340 NC_016860.1 1802446 1805121 R COG1048 Aconitase A; aconitate hydratase complement(1802446..1805121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247431.1 CDS STMDT12_C17350 NC_016860.1 1805506 1805676 R hypothetical protein complement(1805506..1805676) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247432.1 CDS STMDT12_C17360 NC_016860.1 1805677 1805805 R hypothetical protein complement(1805677..1805805) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247433.1 CDS cysB NC_016860.1 1806098 1807072 R COG0583 Transcriptional regulator; transcriptional regulator CysB complement(1806098..1807072) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247434.1 CDS STMDT12_C17380 NC_016860.1 1807483 1810080 R COG0550 Topoisomerase IA; DNA topoisomerase I complement(1807483..1810080) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247435.1 CDS STMDT12_C17390 NC_016860.1 1810483 1810734 D hypothetical protein 1810483..1810734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247436.1 CDS STMDT12_C17400 NC_016860.1 1810776 1811822 R COG0616 Periplasmic serine proteases (ClpP class); putative periplasmic protease complement(1810776..1811822) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247437.1 CDS STMDT12_C17410 NC_016860.1 1812060 1812821 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 1812060..1812821 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247438.1 CDS STMDT12_C17420 NC_016860.1 1812818 1813408 D COG2109 ATP:corrinoid adenosyltransferase; cob(I)yrinic acid a,c-diamide adenosyltransferase 1812818..1813408 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247439.1 CDS STMDT12_C17430 NC_016860.1 1813495 1814370 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase B complement(1813495..1814370) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247440.1 CDS STMDT12_C17440 NC_016860.1 1814471 1815091 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(1814471..1815091) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247441.1 CDS STMDT12_C17450 NC_016860.1 1815099 1815947 R COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein complement(1815099..1815947) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247442.1 CDS STMDT12_C17460 NC_016860.1 1816241 1817803 D COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 1816241..1817803 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247443.1 CDS STMDT12_C17470 NC_016860.1 1817803 1819398 D COG0512 Anthranilate/para-aminobenzoate synthases component II; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1817803..1819398 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247444.1 CDS STMDT12_C17480 NC_016860.1 1819402 1820760 D COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1819402..1820760 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247445.1 CDS STMDT12_C17490 NC_016860.1 1820770 1821963 D COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 1820770..1821963 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247446.1 CDS trpA NC_016860.1 1821963 1822769 D COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1821963..1822769 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247447.1 CDS STMDT12_C17510 NC_016860.1 1823521 1824024 D COG3685 Uncharacterized protein conserved in bacteria; protein YciF 1823521..1824024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247448.1 CDS STMDT12_C17520 NC_016860.1 1824098 1824604 D COG3685 Uncharacterized protein conserved in bacteria; protein YciE 1824098..1824604 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247449.1 CDS STMDT12_C17530 NC_016860.1 1824624 1825502 D COG3546 Mn-containing catalase; hypothetical protein 1824624..1825502 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247450.1 CDS STMDT12_C17540 NC_016860.1 1825584 1826222 R COG3047 Outer membrane protein W; outer membrane protein W complement(1825584..1826222) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247451.1 CDS STMDT12_C17550 NC_016860.1 1826560 1826964 D COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 1826560..1826964 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247452.1 CDS STMDT12_C17560 NC_016860.1 1826990 1827733 D hypothetical protein 1826990..1827733 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247453.1 CDS STMDT12_C17570 NC_016860.1 1827790 1828329 D COG2917 Intracellular septation protein A; intracellular septation protein A 1827790..1828329 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247454.1 CDS STMDT12_C17580 NC_016860.1 1828499 1828891 D COG1607 Acyl-CoA hydrolase; acyl-CoA thioester hydrolase 1828499..1828891 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247455.1 CDS STMDT12_C17590 NC_016860.1 1828951 1829610 R COG0810 Periplasmic protein TonB, links inner and outer membranes; TonB protein complement(1828951..1829610) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247456.1 CDS STMDT12_C17600 NC_016860.1 1829903 1830199 D COG2350 Uncharacterized protein conserved in bacteria; YciI-like protein 1829903..1830199 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247457.1 CDS STMDT12_C17610 NC_016860.1 1830243 1830380 R hypothetical protein complement(1830243..1830380) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247458.1 CDS cls NC_016860.1 1830559 1832019 D COG1502 Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes; cardiolipin synthase 1830559..1832019 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247459.1 CDS STMDT12_C17630 NC_016860.1 1832053 1832382 D COG3099 Uncharacterized protein conserved in bacteria; dsDNA-mimic protein 1832053..1832382 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247460.1 CDS STMDT12_C17640 NC_016860.1 1832430 1833266 R COG1226 Kef-type K+ transport systems, predicted NAD-binding component; ion transport protein complement(1832430..1833266) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247461.1 CDS STMDT12_C17650 NC_016860.1 1833314 1834318 R COG4608 ABC-type oligopeptide transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppF complement(1833314..1834318) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247462.1 CDS oppD NC_016860.1 1834315 1835322 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppD complement(1834315..1835322) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247463.1 CDS STMDT12_C17670 NC_016860.1 1835334 1836242 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease protein OppC complement(1835334..1836242) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247464.1 CDS oppB NC_016860.1 1836257 1837177 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease protein OppB complement(1836257..1837177) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247465.1 CDS STMDT12_C17690 NC_016860.1 1837299 1838930 R COG4166 ABC-type oligopeptide transport system, periplasmic component; periplasmic oligopeptide-binding protein complement(1837299..1838930) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247466.1 CDS STMDT12_C17700 NC_016860.1 1839695 1840342 R COG2095 Multiple antibiotic transporter; hypothetical protein complement(1839695..1840342) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247467.1 CDS STMDT12_C17710 NC_016860.1 1840819 1843497 D COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1840819..1843497 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247468.1 CDS STMDT12_C17720 NC_016860.1 1843694 1844311 R COG1435 Thymidine kinase; thymidine kinase complement(1843694..1844311) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247469.1 CDS STMDT12_C17730 NC_016860.1 1844974 1845387 D COG2916 DNA-binding protein H-NS; global DNA-binding transcriptional dual regulator H-NS 1844974..1845387 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247470.1 CDS STMDT12_C17740 NC_016860.1 1845519 1846427 R COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1845519..1846427) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247471.1 CDS STMDT12_C17750 NC_016860.1 1846630 1847643 R COG0784 FOG: CheY-like receiver; response regulator of RpoS complement(1846630..1847643) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247472.1 CDS STMDT12_C17760 NC_016860.1 1847734 1848639 R COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein complement(1847734..1848639) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247473.1 CDS STMDT12_C17770 NC_016860.1 1848849 1849208 D COG3012 Uncharacterized protein conserved in bacteria; hypothetical protein 1848849..1849208 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247474.1 CDS purU NC_016860.1 1849259 1850101 D COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate deformylase 1849259..1850101 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247475.1 CDS STMDT12_C17790 NC_016860.1 1851068 1852597 R COG0790 FOG: TPR repeat, SEL1 subfamily; tetratricopeptide repeat protein complement(1851068..1852597) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247476.1 CDS STMDT12_C17800 NC_016860.1 1852633 1852797 D hypothetical protein 1852633..1852797 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247477.1 CDS STMDT12_C17810 NC_016860.1 1852839 1853516 R COG2181 Nitrate reductase gamma subunit; respiratory nitrate reductase 1 subunit gamma complement(1852839..1853516) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247478.1 CDS STMDT12_C17820 NC_016860.1 1853516 1854226 R COG2180 Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone 1 complement(1853516..1854226) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247479.1 CDS STMDT12_C17830 NC_016860.1 1854223 1855758 R COG1140 Nitrate reductase beta subunit; nitrate reductase 1 subunit beta complement(1854223..1855758) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247480.1 CDS STMDT12_C17840 NC_016860.1 1855755 1859498 R COG5013 Nitrate reductase alpha subunit; nitrate reductase 1 subunit alpha complement(1855755..1859498) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247481.1 CDS STMDT12_C17850 NC_016860.1 1859886 1861283 R COG2223 Nitrate/nitrite transporter; nitrite extrusion protein 1 complement(1859886..1861283) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247482.1 CDS STMDT12_C17860 NC_016860.1 1861624 1863420 D COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarX 1861624..1863420 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247483.1 CDS STMDT12_C17870 NC_016860.1 1863413 1864063 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarL 1863413..1864063 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247484.1 CDS STMDT12_C17880 NC_016860.1 1864064 1865488 R hypothetical protein complement(1864064..1865488) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247485.1 CDS STMDT12_C17890 NC_016860.1 1865665 1866018 D COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; protein YchN 1865665..1866018 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247486.1 CDS chaB NC_016860.1 1866098 1866328 R COG4572 Putative cation transport regulator; cation transport regulator complement(1866098..1866328) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247487.1 CDS STMDT12_C17910 NC_016860.1 1866595 1867695 D COG0387 Ca2+/H+ antiporter; calcium/sodium:proton antiporter 1866595..1867695 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247488.1 CDS STMDT12_C17920 NC_016860.1 1867749 1868603 R COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1867749..1868603) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247489.1 CDS STMDT12_C17930 NC_016860.1 1868641 1869450 R COG2912 Uncharacterized conserved protein; putative transcriptional regulator complement(1868641..1869450) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247490.1 CDS STMDT12_C17940 NC_016860.1 1869454 1869843 R COG3094 Uncharacterized protein conserved in bacteria; putative transcriptional regulator complement(1869454..1869843) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247491.1 CDS STMDT12_C17950 NC_016860.1 1869840 1870673 R COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1869840..1870673) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247492.1 CDS prfA NC_016860.1 1870673 1871755 R COG0216 Protein chain release factor A; peptide chain release factor 1 complement(1870673..1871755) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247493.1 CDS hemA NC_016860.1 1871796 1873052 R COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(1871796..1873052) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247494.1 CDS STMDT12_C17980 NC_016860.1 1873220 1873348 R hypothetical protein complement(1873220..1873348) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247495.1 CDS lolB NC_016860.1 1873366 1873989 D COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis; outer membrane lipoprotein LolB 1873366..1873989 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247496.1 CDS ipk NC_016860.1 1873986 1874837 D COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1873986..1874837 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247497.1 CDS STMDT12_C18010 NC_016860.1 1875085 1876050 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 1875085..1876050 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247498.1 CDS STMDT12_C18020 NC_016860.1 1876175 1877860 D COG0659 Sulfate permease and related transporters (MFS superfamily); putative sulfate transporter YchM 1876175..1877860 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247499.1 CDS STMDT12_C18030 NC_016860.1 1877905 1878183 R hypothetical protein complement(1877905..1878183) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247500.1 CDS STMDT12_C18040 NC_016860.1 1878459 1879043 D COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1878459..1879043 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247501.1 CDS STMDT12_C18050 NC_016860.1 1879160 1880251 D COG0012 Predicted GTPase, probable translation factor; GTP-dependent nucleic acid-binding protein EngD 1879160..1880251 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247502.1 CDS STMDT12_C18060 NC_016860.1 1880410 1881675 R putative cytoplasmic protein complement(1880410..1881675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247503.1 CDS STMDT12_C18070 NC_016860.1 1882170 1883288 D COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 1 small subunit 1882170..1883288 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247504.1 CDS STMDT12_C18080 NC_016860.1 1883285 1885078 D COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 1 large subunit 1883285..1885078 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247505.1 CDS STMDT12_C18090 NC_016860.1 1885097 1885828 D COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; hydrogenase 1 b-type cytochrome subunit 1885097..1885828 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247506.1 CDS STMDT12_C18100 NC_016860.1 1885825 1886421 D COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 1885825..1886421 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247507.1 CDS STMDT12_C18110 NC_016860.1 1886411 1886815 D COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase 1 operon protein HyaE 1886411..1886815 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247508.1 CDS STMDT12_C18120 NC_016860.1 1886812 1887660 D hydrogenase 1 operon protein HyaF 1886812..1887660 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247509.1 CDS STMDT12_C18130 NC_016860.1 1887735 1889279 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome bd-II oxidase subunit I 1887735..1889279 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247510.1 CDS STMDT12_C18140 NC_016860.1 1889291 1890427 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome bd-II oxidase subunit II 1889291..1890427 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247511.1 CDS STMDT12_C18150 NC_016860.1 1890440 1890529 D membrane protein 1890440..1890529 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247512.1 CDS STMDT12_C18160 NC_016860.1 1890924 1892198 D COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1890924..1892198 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247513.1 CDS treA NC_016860.1 1892412 1894124 D COG1626 Neutral trehalase; trehalase 1892412..1894124 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247514.1 CDS STMDT12_C18180 NC_016860.1 1894187 1894441 R COG2261 Predicted membrane protein; transglycosylase associated protein complement(1894187..1894441) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247515.1 CDS STMDT12_C18190 NC_016860.1 1894610 1895344 D COG5581 Predicted glycosyltransferase; YcgR family protein 1894610..1895344 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247516.1 CDS STMDT12_C18200 NC_016860.1 1895358 1895969 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase E complement(1895358..1895969) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247517.1 CDS ldcA NC_016860.1 1896140 1897054 D COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; L,D-carboxypeptidase A 1896140..1897054 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247518.1 CDS STMDT12_C18220 NC_016860.1 1897151 1898884 D COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; potassium/proton antiporter 1897151..1898884 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247519.1 CDS dadX NC_016860.1 1898947 1900017 R COG0787 Alanine racemase; alanine racemase complement(1898947..1900017) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247520.1 CDS STMDT12_C18240 NC_016860.1 1900031 1901329 R COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase small subunit complement(1900031..1901329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247521.1 CDS STMDT12_C18250 NC_016860.1 1901652 1903184 D COG2719 Uncharacterized conserved protein; SpoVR family protein 1901652..1903184 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247522.1 CDS STMDT12_C18260 NC_016860.1 1903231 1903950 R COG2186 Transcriptional regulators; fatty acid metabolism regulator complement(1903231..1903950) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247523.1 CDS nhaB NC_016860.1 1904170 1905714 D COG3067 Na+/H+ antiporter; sodium/proton antiporter 1904170..1905714 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247524.1 CDS STMDT12_C18280 NC_016860.1 1905856 1906386 D COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein B 1905856..1906386 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247525.1 CDS STMDT12_C18290 NC_016860.1 1906495 1906836 D COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; tellurite resistance protein TehB 1906495..1906836 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247526.1 CDS STMDT12_C18300 NC_016860.1 1906908 1907081 R hypothetical protein complement(1906908..1907081) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247527.1 CDS STMDT12_C18310 NC_016860.1 1907454 1907552 R hypothetical protein complement(1907454..1907552) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247528.1 CDS STMDT12_C18320 NC_016860.1 1907762 1908223 R COG2983 Uncharacterized conserved protein; hypothetical protein complement(1907762..1908223) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247529.1 CDS STMDT12_C18330 NC_016860.1 1908301 1908960 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); hypothetical protein complement(1908301..1908960) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247530.1 CDS STMDT12_C18340 NC_016860.1 1909010 1909303 R COG3100 Uncharacterized protein conserved in bacteria; protein YcgL complement(1909010..1909303) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247531.1 CDS minC NC_016860.1 1909429 1910136 D COG0850 Septum formation inhibitor; septum formation inhibitor 1909429..1910136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247532.1 CDS STMDT12_C18360 NC_016860.1 1910160 1910972 D COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor MinD 1910160..1910972 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247533.1 CDS minE NC_016860.1 1910976 1911242 D COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 1910976..1911242 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247534.1 CDS STMDT12_C18380 NC_016860.1 1911364 1912479 R COG0349 Ribonuclease D; ribonuclease D complement(1911364..1912479) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247535.1 CDS STMDT12_C18390 NC_016860.1 1912564 1914249 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; long-chain-fatty-acid--CoA ligase complement(1912564..1914249) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247536.1 CDS STMDT12_C18400 NC_016860.1 1914454 1915035 R COG3065 Starvation-inducible outer membrane lipoprotein; putative outer membrane protein complement(1914454..1915035) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247537.1 CDS STMDT12_C18410 NC_016860.1 1915107 1915802 R COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein complement(1915107..1915802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247538.1 CDS STMDT12_C18420 NC_016860.1 1915860 1917770 R COG1199 Rad3-related DNA helicases; putative ATP-dependent DNA helicase complement(1915860..1917770) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247539.1 CDS STMDT12_C18430 NC_016860.1 1917901 1918245 D COG0251 Putative translation initiation inhibitor, yjgF family; endoribonuclease L-PSP family protein 1917901..1918245 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247540.1 CDS STMDT12_C18440 NC_016860.1 1918251 1918430 R COG3140 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1918251..1918430) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247541.1 CDS STMDT12_C18450 NC_016860.1 1918514 1919875 D COG0147 Anthranilate/para-aminobenzoate synthases component I; para-aminobenzoate synthase component I 1918514..1919875 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247542.1 CDS STMDT12_C18460 NC_016860.1 1919879 1920457 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hypothetical protein 1919879..1920457 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247543.1 CDS STMDT12_C18470 NC_016860.1 1920721 1922085 D COG1760 L-serine deaminase; L-serine deaminase I 1920721..1922085 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247544.1 CDS STMDT12_C18480 NC_016860.1 1922223 1923824 D COG2200 FOG: EAL domain; diguanylate cyclase 1922223..1923824 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247545.1 CDS STMDT12_C18490 NC_016860.1 1923846 1925405 R COG0861 Membrane protein TerC, possibly involved in tellurium resistance; membrane protein complement(1923846..1925405) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247546.1 CDS STMDT12_C18500 NC_016860.1 1925878 1926846 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; mannose-specific PTS system IIAB protein 1925878..1926846 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247547.1 CDS STMDT12_C18510 NC_016860.1 1926899 1927699 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system IIC protein 1926899..1927699 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247548.1 CDS STMDT12_C18520 NC_016860.1 1927712 1928563 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; mannose-specific PTS system IID protein 1927712..1928563 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247549.1 CDS STMDT12_C18530 NC_016860.1 1928621 1929091 D COG4811 Predicted membrane protein; hypothetical protein 1928621..1929091 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247550.1 CDS STMDT12_C18540 NC_016860.1 1929435 1930055 D COG1971 Predicted membrane protein; hypothetical protein 1929435..1930055 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247551.1 CDS rrmA NC_016860.1 1930052 1930861 R COG0500 SAM-dependent methyltransferases; 23S rRNA methyltransferase A complement(1930052..1930861) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247552.1 CDS STMDT12_C18560 NC_016860.1 1930927 1932672 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein complement(1930927..1932672) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247553.1 CDS STMDT12_C18570 NC_016860.1 1932892 1933101 R COG1278 Cold shock proteins; cold shock protein CspC complement(1932892..1933101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247554.1 CDS STMDT12_C18580 NC_016860.1 1933114 1933257 R hypothetical protein complement(1933114..1933257) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247555.1 CDS STMDT12_C18590 NC_016860.1 1933906 1934193 R hypothetical protein complement(1933906..1934193) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247556.1 CDS STMDT12_C18600 NC_016860.1 1934264 1934407 R hypothetical protein complement(1934264..1934407) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247557.1 CDS STMDT12_C18610 NC_016860.1 1934565 1934804 D hypothetical protein 1934565..1934804 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247558.1 CDS STMDT12_C18620 NC_016860.1 1934900 1935001 R hypothetical protein complement(1934900..1935001) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247559.1 CDS STMDT12_C18630 NC_016860.1 1935016 1935807 R COG1414 Transcriptional regulator; transcriptional regulator KdgR complement(1935016..1935807) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247560.1 CDS STMDT12_C18640 NC_016860.1 1935983 1937356 D COG0477 Permeases of the major facilitator superfamily; putative transport protein 1935983..1937356 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247561.1 CDS STMDT12_C18650 NC_016860.1 1937404 1938282 R COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX complement(1937404..1938282) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247562.1 CDS STMDT12_C18660 NC_016860.1 1938479 1940527 R COG0793 Periplasmic protease; carboxy-terminal protease complement(1938479..1940527) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247563.1 CDS STMDT12_C18670 NC_016860.1 1940547 1941233 R COG3109 Activator of osmoprotectant transporter ProP; putative solute/DNA competence effector complement(1940547..1941233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247564.1 CDS STMDT12_C18680 NC_016860.1 1941331 1941828 R COG1956 GAF domain-containing protein; hypothetical protein complement(1941331..1941828) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247565.1 CDS STMDT12_C18690 NC_016860.1 1941957 1943240 D COG2995 Uncharacterized paraquat-inducible protein A; hypothetical protein 1941957..1943240 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247566.1 CDS STMDT12_C18700 NC_016860.1 1943203 1945842 D COG3008 Paraquat-inducible protein B; Mce family protein 1943203..1945842 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247567.1 CDS rsmF NC_016860.1 1945818 1947359 D COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase F 1945818..1947359 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247568.1 CDS STMDT12_C18720 NC_016860.1 1947474 1947713 D hypothetical protein 1947474..1947713 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247569.1 CDS STMDT12_C18730 NC_016860.1 1947824 1948015 D putative inner membrane lipoprotein 1947824..1948015 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247570.1 CDS pphA NC_016860.1 1948034 1948684 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 1 complement(1948034..1948684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247571.1 CDS STMDT12_C18750 NC_016860.1 1948671 1948787 R hypothetical protein complement(1948671..1948787) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247572.1 CDS STMDT12_C18760 NC_016860.1 1948908 1949072 R hypothetical protein complement(1948908..1949072) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247573.1 CDS sopE NC_016860.1 1949357 1950079 R COG0481 Membrane GTPase LepA; guanine nucleotide exchange factor SopE complement(1949357..1950079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247574.1 CDS STMDT12_C18780 NC_016860.1 1950778 1951158 D COG5562 Phage envelope protein; hypothetical protein 1950778..1951158 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247575.1 CDS STMDT12_C18790 NC_016860.1 1951488 1951964 D hypothetical protein 1951488..1951964 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247576.1 CDS STMDT12_C18800 NC_016860.1 1952352 1952771 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(1952352..1952771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247577.1 CDS STMDT12_C18810 NC_016860.1 1953317 1953463 D hypothetical protein 1953317..1953463 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247578.1 CDS STMDT12_C18820 NC_016860.1 1953862 1953939 R putative frameshift mutation; transposase complement(1953862..1953939) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247579.1 CDS STMDT12_C18830 NC_016860.1 1954053 1954199 R COG3328 Transposase and inactivated derivatives; putative frameshift mutation; transposase complement(1954053..1954199) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247580.1 CDS STMDT12_C18840 NC_016860.1 1954199 1955056 R COG3328 Transposase and inactivated derivatives; putative frameshift mutation; transposase complement(1954199..1955056) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247581.1 CDS STMDT12_C18850 NC_016860.1 1955180 1955548 D COG0582 Integrase; putative cytoplasmic protein 1955180..1955548 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247582.1 CDS STMDT12_C18860 NC_016860.1 1956034 1956234 R hypothetical protein complement(1956034..1956234) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247583.1 CDS STMDT12_C18870 NC_016860.1 1956852 1957766 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; protein PagO 1956852..1957766 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247584.1 CDS STMDT12_C18880 NC_016860.1 1957899 1958057 D putative inner membrane protein 1957899..1958057 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247585.1 CDS STMDT12_C18890 NC_016860.1 1958067 1958681 D COG1495 Disulfide bond formation protein DsbB; putative inner membrane protein 1958067..1958681 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247586.1 CDS STMDT12_C18900 NC_016860.1 1959130 1959306 R hypothetical protein complement(1959130..1959306) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247587.1 CDS STMDT12_C18910 NC_016860.1 1959997 1960272 D COG3677 Transposase and inactivated derivatives; IS1 transposase 1959997..1960272 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247588.1 CDS STMDT12_C18920 NC_016860.1 1960191 1960694 D COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 1960191..1960694 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247589.1 CDS STMDT12_C18930 NC_016860.1 1961048 1961581 R phage tail assembly-like protein complement(1961048..1961581) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247590.1 CDS STMDT12_C18940 NC_016860.1 1961635 1961865 R COG3179 Predicted chitinase; lytic enzyme complement(1961635..1961865) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247591.1 CDS STMDT12_C18950 NC_016860.1 1961896 1962549 D exonuclease VIII 1961896..1962549 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247592.1 CDS STMDT12_C18960 NC_016860.1 1962609 1963463 D COG0582 Integrase; integrase 1962609..1963463 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247593.1 CDS STMDT12_C18970 NC_016860.1 1963837 1964190 R hypothetical protein complement(1963837..1964190) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247594.1 CDS STMDT12_C18980 NC_016860.1 1964207 1965082 R COG1276 Putative copper export protein; putative cation transporter complement(1964207..1965082) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247595.1 CDS STMDT12_C18990 NC_016860.1 1965083 1965457 R COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; hypothetical protein complement(1965083..1965457) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247596.1 CDS STMDT12_C19000 NC_016860.1 1965595 1965825 D DNA polymerase III subunit theta 1965595..1965825 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247597.1 CDS STMDT12_C19010 NC_016860.1 1965933 1966589 D COG0388 Predicted amidohydrolase; putative amidohydrolase 1965933..1966589 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247598.1 CDS STMDT12_C19020 NC_016860.1 1966613 1967311 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; exodeoxyribonuclease X 1966613..1967311 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247599.1 CDS STMDT12_C19030 NC_016860.1 1967346 1969397 R COG1770 Protease II; protease 2 complement(1967346..1969397) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247600.1 CDS STMDT12_C19040 NC_016860.1 1969610 1970269 R COG2979 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1969610..1970269) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247601.1 CDS STMDT12_C19050 NC_016860.1 1970363 1970716 R hypothetical protein complement(1970363..1970716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247602.1 CDS STMDT12_C19060 NC_016860.1 1970784 1971074 R COG3141 Uncharacterized protein conserved in bacteria; DNA damage-inducible protein YebG complement(1970784..1971074) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247603.1 CDS purT NC_016860.1 1971205 1972383 D COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); phosphoribosylglycinamide formyltransferase 2 1971205..1972383 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247604.1 CDS STMDT12_C19080 NC_016860.1 1972383 1972478 D hypothetical protein 1972383..1972478 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247605.1 CDS STMDT12_C19090 NC_016860.1 1972483 1973124 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1972483..1973124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247606.1 CDS STMDT12_C19100 NC_016860.1 1973162 1974973 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase complement(1973162..1974973) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247607.1 CDS STMDT12_C19110 NC_016860.1 1975208 1976683 R COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1975208..1976683) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247608.1 CDS STMDT12_C19120 NC_016860.1 1977025 1977894 D COG1737 Transcriptional regulators; DNA-binding transcriptional regulator HexR 1977025..1977894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247609.1 CDS STMDT12_C19130 NC_016860.1 1978018 1979460 D COG0469 Pyruvate kinase; pyruvate kinase 1978018..1979460 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247610.1 CDS msbB NC_016860.1 1979533 1980504 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A acyltransferase complement(1979533..1980504) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247611.1 CDS STMDT12_C19150 NC_016860.1 1980621 1981940 R COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein complement(1980621..1981940) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247612.1 CDS znuA NC_016860.1 1981956 1982900 R COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; high-affinity zinc ABC transporter substrate binding protein complement(1981956..1982900) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247613.1 CDS znuC NC_016860.1 1982979 1983734 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; high-affinity zinc ABC transporter ATP-binding protein 1982979..1983734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247614.1 CDS znuB NC_016860.1 1983731 1984516 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; high-affinity zinc ABC transporter permease protein 1983731..1984516 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247615.1 CDS ruvB NC_016860.1 1984595 1985605 R COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB complement(1984595..1985605) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247616.1 CDS ruvA NC_016860.1 1985614 1986225 R COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA complement(1985614..1986225) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247617.1 CDS STMDT12_C19210 NC_016860.1 1986558 1987541 D putative cytoplasmic protein 1986558..1987541 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247618.1 CDS STMDT12_C19220 NC_016860.1 1988168 1988767 D hypothetical protein 1988168..1988767 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247619.1 CDS ruvC NC_016860.1 1988769 1989290 R COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase complement(1988769..1989290) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247620.1 CDS STMDT12_C19240 NC_016860.1 1989327 1990067 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(1989327..1990067) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247621.1 CDS ntpA NC_016860.1 1990097 1990549 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dATP pyrophosphohydrolase complement(1990097..1990549) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247622.1 CDS aspS NC_016860.1 1990652 1992424 R COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1990652..1992424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247623.1 CDS STMDT12_C19270 NC_016860.1 1992749 1993315 D COG1335 Amidases related to nicotinamidase; hypothetical protein 1992749..1993315 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247624.1 CDS STMDT12_C19280 NC_016860.1 1993312 1994130 D COG1801 Uncharacterized conserved protein; hypothetical protein 1993312..1994130 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247625.1 CDS STMDT12_C19290 NC_016860.1 1994183 1994578 D COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily; putative inner membrane protein 1994183..1994578 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247626.1 CDS STMDT12_C19300 NC_016860.1 1994619 1995362 D COG0500 SAM-dependent methyltransferases; putative methyltransferase 1994619..1995362 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247627.1 CDS STMDT12_C19310 NC_016860.1 1995359 1996330 D COG0500 SAM-dependent methyltransferases; putative methyltransferase 1995359..1996330 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247628.1 CDS STMDT12_C19320 NC_016860.1 1996566 1997312 R COG3142 Uncharacterized protein involved in copper resistance; copper homeostasis protein CutC complement(1996566..1997312) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247629.1 CDS STMDT12_C19330 NC_016860.1 1997332 1997901 R COG3102 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1997332..1997901) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247630.1 CDS argS NC_016860.1 1998138 1999871 D COG0018 Arginyl-tRNA synthetase; arginyl-tRNA synthetase 1998138..1999871 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247631.1 CDS STMDT12_C19350 NC_016860.1 2000060 2001931 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 2000060..2001931 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247632.1 CDS STMDT12_C19360 NC_016860.1 2001985 2003124 R COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins; glycosyl hydrolase family protein complement(2001985..2003124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247633.1 CDS STMDT12_C19370 NC_016860.1 2003361 2003753 R flagellar protein FlhE complement(2003361..2003753) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247634.1 CDS flhA NC_016860.1 2003753 2005831 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(2003753..2005831) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247635.1 CDS flhB NC_016860.1 2005824 2006975 R COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB complement(2005824..2006975) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247636.1 CDS STMDT12_C19400 NC_016860.1 2007169 2007813 R COG3143 Chemotaxis protein; chemotaxis regulatory protein CheZ complement(2007169..2007813) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247637.1 CDS STMDT12_C19410 NC_016860.1 2007824 2008213 R COG0784 FOG: CheY-like receiver; chemotaxis regulatory protein CheY complement(2007824..2008213) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247638.1 CDS STMDT12_C19420 NC_016860.1 2008231 2009280 R COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; chemotaxis-specific methylesterase complement(2008231..2009280) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247639.1 CDS STMDT12_C19430 NC_016860.1 2009277 2010098 R COG1352 Methylase of chemotaxis methyl-accepting proteins; chemotaxis methyltransferase CheR complement(2009277..2010098) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247640.1 CDS STMDT12_C19440 NC_016860.1 2010297 2011958 R COG0840 Methyl-accepting chemotaxis protein; methyl accepting chemotaxis protein II complement(2010297..2011958) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247641.1 CDS STMDT12_C19450 NC_016860.1 2012195 2012698 R COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein complement(2012195..2012698) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247642.1 CDS STMDT12_C19460 NC_016860.1 2012719 2014728 R COG0643 Chemotaxis protein histidine kinase and related kinases; chemotaxis protein CheA complement(2012719..2014728) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247643.1 CDS motB NC_016860.1 2014739 2015668 R COG1360 Flagellar motor protein; flagellar motor protein MotB complement(2014739..2015668) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247644.1 CDS STMDT12_C19480 NC_016860.1 2015665 2016552 R COG1291 Flagellar motor component; flagellar motor protein MotA complement(2015665..2016552) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247645.1 CDS STMDT12_C19490 NC_016860.1 2016677 2017255 R transcriptional activator FlhC complement(2016677..2017255) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247646.1 CDS STMDT12_C19500 NC_016860.1 2017258 2017599 R transcriptional activator FlhD complement(2017258..2017599) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247647.1 CDS STMDT12_C19510 NC_016860.1 2018395 2018823 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspC 2018395..2018823 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247648.1 CDS STMDT12_C19520 NC_016860.1 2018841 2020262 R COG0380 Trehalose-6-phosphate synthase; trehalose-6-phosphate synthase complement(2018841..2020262) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247649.1 CDS STMDT12_C19530 NC_016860.1 2020237 2021040 R COG1877 Trehalose-6-phosphatase; trehalose-6-phosphate phosphatase complement(2020237..2021040) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247650.1 CDS STMDT12_C19540 NC_016860.1 2021673 2022230 R COG0693 Putative intracellular protease/amidase; ThiJ/PfpI domain-containing protein complement(2021673..2022230) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247651.1 CDS STMDT12_C19550 NC_016860.1 2022485 2022580 R hypothetical protein complement(2022485..2022580) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247652.1 CDS STMDT12_C19560 NC_016860.1 2022781 2023284 D COG1528 Ferritin-like protein; ferritin-like protein 2022781..2023284 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247653.1 CDS STMDT12_C19570 NC_016860.1 2023463 2024101 R COG0698 Ribose 5-phosphate isomerase RpiB; hypothetical protein complement(2023463..2024101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247654.1 CDS STMDT12_C19580 NC_016860.1 2024357 2024692 D putative outer membrane lipoprotein 2024357..2024692 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247655.1 CDS STMDT12_C19590 NC_016860.1 2024932 2025429 D COG1528 Ferritin-like protein; ferritin 2024932..2025429 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247656.1 CDS STMDT12_C19600 NC_016860.1 2025475 2025714 R hypothetical protein complement(2025475..2025714) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247657.1 CDS STMDT12_C19610 NC_016860.1 2025884 2027152 D COG0814 Amino acid permeases; tyrosine-specific transporter 2025884..2027152 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247658.1 CDS STMDT12_C19620 NC_016860.1 2027227 2027892 R COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; hypothetical protein complement(2027227..2027892) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247659.1 CDS STMDT12_C19630 NC_016860.1 2028130 2028456 R putative glucose-6-phosphate dehydrogenase complement(2028130..2028456) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247660.1 CDS STMDT12_C19640 NC_016860.1 2028669 2030102 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative cell wall-associated hydrolase complement(2028669..2030102) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247661.1 CDS STMDT12_C19650 NC_016860.1 2030321 2030653 R putative inner membrane protein complement(2030321..2030653) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247662.1 CDS STMDT12_C19660 NC_016860.1 2031354 2031902 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthetase complement(2031354..2031902) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247663.1 CDS uvrC NC_016860.1 2031959 2033791 R COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C complement(2031959..2033791) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247664.1 CDS STMDT12_C19680 NC_016860.1 2033788 2034444 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator complement(2033788..2034444) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247665.1 CDS STMDT12_C19690 NC_016860.1 2034756 2034911 D putative inner membrane protein 2034756..2034911 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247666.1 CDS STMDT12_C19700 NC_016860.1 2034908 2035132 D hypothetical protein 2034908..2035132 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247667.1 CDS STMDT12_C19710 NC_016860.1 2035199 2035921 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional activator SdiA complement(2035199..2035921) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247668.1 CDS STMDT12_C19720 NC_016860.1 2036153 2036905 R COG1126 ABC-type polar amino acid transport system, ATPase component; putative amino-acid ABC transporter ATP-binding protein YecC complement(2036153..2036905) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247669.1 CDS STMDT12_C19730 NC_016860.1 2036902 2037570 R COG0765 ABC-type amino acid transport system, permease component; amine ABC transporter permease protein complement(2036902..2037570) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247670.1 CDS STMDT12_C19740 NC_016860.1 2037591 2038577 R COG2515 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase complement(2037591..2038577) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247671.1 CDS STMDT12_C19750 NC_016860.1 2038731 2039531 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; cystine transporter subunit complement(2038731..2039531) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247672.1 CDS STMDT12_C19760 NC_016860.1 2039678 2040229 R flagellar biosynthesis protein FliZ complement(2039678..2040229) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247673.1 CDS fliA NC_016860.1 2040288 2040977 R COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor complement(2040288..2040977) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247674.1 CDS STMDT12_C19780 NC_016860.1 2041276 2041734 R COG1943 Transposase and inactivated derivatives; IS200 transposase complement(2041276..2041734) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247675.1 CDS STMDT12_C19790 NC_016860.1 2041915 2043120 R lysine-N-methylase complement(2041915..2043120) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247676.1 CDS STMDT12_C19800 NC_016860.1 2043199 2044686 R COG1344 Flagellin and related hook-associated proteins; flagellin complement(2043199..2044686) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247677.1 CDS fliD NC_016860.1 2044943 2046346 D COG1345 Flagellar capping protein; flagellar capping protein 2044943..2046346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247678.1 CDS fliS NC_016860.1 2046361 2046768 D COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 2046361..2046768 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247679.1 CDS STMDT12_C19830 NC_016860.1 2046768 2047136 D flagellar biosynthesis protein FliT 2046768..2047136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247680.1 CDS STMDT12_C19840 NC_016860.1 2047208 2048692 D COG0366 Glycosidases; alpha-amylase 2047208..2048692 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247681.1 CDS STMDT12_C19850 NC_016860.1 2048732 2049157 R hypothetical protein complement(2048732..2049157) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247682.1 CDS STMDT12_C19860 NC_016860.1 2049343 2050548 D COG2391 Predicted transporter component; putative inner membrane protein 2049343..2050548 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247683.1 CDS STMDT12_C19870 NC_016860.1 2050545 2050778 D COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 2050545..2050778 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247684.1 CDS STMDT12_C19880 NC_016860.1 2051076 2051429 D hypothetical protein 2051076..2051429 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247685.1 CDS fliE NC_016860.1 2051549 2051863 R COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE complement(2051549..2051863) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247686.1 CDS fliF NC_016860.1 2052080 2053762 D COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 2052080..2053762 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247687.1 CDS fliG NC_016860.1 2053755 2054750 D COG1536 Flagellar motor switch protein; flagellar motor switch protein G 2053755..2054750 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247688.1 CDS fliH NC_016860.1 2054743 2055450 D COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 2054743..2055450 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247689.1 CDS fliI NC_016860.1 2055450 2056820 D COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 2055450..2056820 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247690.1 CDS fliJ NC_016860.1 2056842 2057285 D COG2882 Flagellar biosynthesis chaperone; flagellar biosynthesis chaperone 2056842..2057285 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247691.1 CDS STMDT12_C19950 NC_016860.1 2057282 2058499 D COG3144 Flagellar hook-length control protein; flagellar hook-length control protein 2057282..2058499 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247692.1 CDS fliL NC_016860.1 2058604 2059071 D COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2058604..2059071 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247693.1 CDS fliM NC_016860.1 2059076 2060080 D COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 2059076..2060080 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247694.1 CDS fliN NC_016860.1 2060077 2060490 D COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 2060077..2060490 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247695.1 CDS STMDT12_C19990 NC_016860.1 2060490 2060867 D COG3190 Flagellar biogenesis protein; flagellar biosynthesis protein FliO 2060490..2060867 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247696.1 CDS fliP NC_016860.1 2060867 2061604 D COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 2060867..2061604 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247697.1 CDS fliQ NC_016860.1 2061614 2061883 D COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 2061614..2061883 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247698.1 CDS fliR NC_016860.1 2061892 2062686 D COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 2061892..2062686 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247699.1 CDS STMDT12_C20030 NC_016860.1 2062968 2063591 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; colanic acid capsullar biosynthesis activation protein A 2062968..2063591 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247700.1 CDS STMDT12_C20040 NC_016860.1 2063630 2063824 R hypothetical protein complement(2063630..2063824) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247701.1 CDS STMDT12_C20050 NC_016860.1 2063953 2064180 D hypothetical protein 2063953..2064180 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247702.1 CDS STMDT12_C20060 NC_016860.1 2064490 2065305 D COG3769 Predicted hydrolase (HAD superfamily); mannosyl-3-phosphoglycerate phosphatase 2064490..2065305 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247703.1 CDS STMDT12_C20070 NC_016860.1 2065284 2066996 R COG2199 FOG: GGDEF domain; putative inner membrane protein complement(2065284..2066996) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247704.1 CDS STMDT12_C20080 NC_016860.1 2067161 2067346 R COG5475 Uncharacterized small protein; hypothetical protein complement(2067161..2067346) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247705.1 CDS STMDT12_C20090 NC_016860.1 2067423 2068334 R COG2354 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2067423..2068334) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247706.1 CDS STMDT12_C20100 NC_016860.1 2068510 2069430 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 2068510..2069430 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247707.1 CDS STMDT12_C20110 NC_016860.1 2069419 2069889 R COG3727 DNA G:T-mismatch repair endonuclease; very short patch repair protein complement(2069419..2069889) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247708.1 CDS STMDT12_C20120 NC_016860.1 2069870 2071300 R COG0270 Site-specific DNA methylase; DNA cytosine methylase complement(2069870..2071300) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247709.1 CDS STMDT12_C20130 NC_016860.1 2071374 2072069 R COG1418 Predicted HD superfamily hydrolase; hypothetical protein complement(2071374..2072069) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247710.1 CDS STMDT12_C20140 NC_016860.1 2072161 2072427 R outer membrane protein N complement(2072161..2072427) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247711.1 CDS STMDT12_C20150 NC_016860.1 2072536 2072667 D hypothetical protein 2072536..2072667 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247712.1 CDS STMDT12_C20160 NC_016860.1 2073110 2074306 D COG3203 Outer membrane protein (porin); outer membrane protein S1 2073110..2074306 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247713.1 CDS STMDT12_C20170 NC_016860.1 2074766 2074978 R COG1278 Cold shock proteins; cold shock protein complement(2074766..2074978) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247714.1 CDS umuC NC_016860.1 2075433 2076701 R COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC complement(2075433..2076701) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247715.1 CDS STMDT12_C20190 NC_016860.1 2076704 2077123 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD complement(2076704..2077123) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247716.1 CDS STMDT12_C20200 NC_016860.1 2077250 2077411 R hypothetical protein complement(2077250..2077411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247717.1 CDS STMDT12_C20210 NC_016860.1 2077892 2078689 D COG3228 Uncharacterized protein conserved in bacteria; protein MtfA 2077892..2078689 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247718.1 CDS STMDT12_C20220 NC_016860.1 2078979 2079149 D COG0582 Integrase; hypothetical protein 2078979..2079149 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247719.1 CDS STMDT12_C20230 NC_016860.1 2079061 2079351 D COG0582 Integrase; hypothetical protein 2079061..2079351 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247720.1 CDS STMDT12_C20240 NC_016860.1 2079358 2079462 R hypothetical protein complement(2079358..2079462) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247721.1 CDS STMDT12_C20250 NC_016860.1 2079999 2080472 D putative endoprotease 2079999..2080472 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247722.1 CDS STMDT12_C20260 NC_016860.1 2080947 2081645 D COG0582 Integrase; putative DNA-binding protein 2080947..2081645 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247723.1 CDS STMDT12_C20270 NC_016860.1 2081530 2081778 D COG3335 Transposase and inactivated derivatives; hypothetical protein 2081530..2081778 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247724.1 CDS STMDT12_C20280 NC_016860.1 2081988 2084156 D COG2849 Uncharacterized protein conserved in bacteria; tetratricopeptide repeat protein 2081988..2084156 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247725.1 CDS STMDT12_C20290 NC_016860.1 2084213 2085943 D hypothetical protein 2084213..2085943 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247726.1 CDS STMDT12_C20300 NC_016860.1 2085974 2086108 D hypothetical protein 2085974..2086108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247727.1 CDS STMDT12_C20310 NC_016860.1 2086153 2086326 D hypothetical protein 2086153..2086326 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247728.1 CDS STMDT12_C20320 NC_016860.1 2086418 2086567 D hypothetical protein 2086418..2086567 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247729.1 CDS STMDT12_C20330 NC_016860.1 2086646 2086768 D hypothetical protein 2086646..2086768 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247730.1 CDS STMDT12_C20340 NC_016860.1 2086848 2088302 R COG0775 Nucleoside phosphorylase; AMP nucleosidase complement(2086848..2088302) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247731.1 CDS STMDT12_C20350 NC_016860.1 2088498 2088824 R putative cytoplasmic protein complement(2088498..2088824) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247732.1 CDS STMDT12_C20360 NC_016860.1 2089918 2091375 R COG0534 Na+-driven multidrug efflux pump; hypothetical protein complement(2089918..2091375) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247733.1 CDS STMDT12_C20370 NC_016860.1 2091837 2092766 R COG1376 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2091837..2092766) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247734.1 CDS cobT NC_016860.1 2092844 2093914 R COG2038 NaMN:DMB phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2092844..2093914) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247735.1 CDS cobS NC_016860.1 2093941 2094684 R COG0368 Cobalamin-5-phosphate synthase; cobalamin synthase complement(2093941..2094684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247736.1 CDS cobU NC_016860.1 2094681 2095226 R COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2094681..2095226) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247737.1 CDS STMDT12_C20410 NC_016860.1 2095223 2096743 R COG1492 Cobyric acid synthase; cobyric acid synthase complement(2095223..2096743) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247738.1 CDS cbiO NC_016860.1 2096740 2097555 R COG1122 ABC-type cobalt transport system, ATPase component; cobalt transporter ATP-binding subunit complement(2096740..2097555) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247739.1 CDS STMDT12_C20430 NC_016860.1 2097564 2098241 R COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; vitamin B12 biosynthesis protein complement(2097564..2098241) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247740.1 CDS STMDT12_C20440 NC_016860.1 2098228 2098509 R COG1930 ABC-type cobalt transport system, periplasmic component; cobalt transport protein CbiN complement(2098228..2098509) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247741.1 CDS STMDT12_C20450 NC_016860.1 2098511 2099248 R COG0310 ABC-type Co2+ transport system, permease component; cobalamin biosynthesis protein CbiM complement(2098511..2099248) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247742.1 CDS STMDT12_C20460 NC_016860.1 2099245 2099958 R COG2243 Precorrin-2 methylase; precorrin-2 C(20)-methyltransferase complement(2099245..2099958) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247743.1 CDS STMDT12_C20470 NC_016860.1 2099955 2100749 R COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase; sirohydrochlorin cobaltochelatase complement(2099955..2100749) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247744.1 CDS STMDT12_C20480 NC_016860.1 2100752 2101543 R COG2099 Precorrin-6x reductase; cobalt-precorrin-6x reductase complement(2100752..2101543) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247745.1 CDS STMDT12_C20490 NC_016860.1 2101540 2102265 R COG1010 Precorrin-3B methylase; precorrin-3B C(17)-methyltransferase complement(2101540..2102265) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247746.1 CDS STMDT12_C20500 NC_016860.1 2102265 2103320 R COG2073 Cobalamin biosynthesis protein CbiG; cobalamin biosynthesis protein CbiG complement(2102265..2103320) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247747.1 CDS STMDT12_C20510 NC_016860.1 2103301 2104074 R COG2875 Precorrin-4 methylase; precorrin-4 C(11)-methyltransferase complement(2103301..2104074) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247748.1 CDS STMDT12_C20520 NC_016860.1 2104058 2104636 R COG2242 Precorrin-6B methylase 2; cobalt-precorrin-6Y C15-methyltransferase complement(2104058..2104636) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247749.1 CDS STMDT12_C20530 NC_016860.1 2104626 2105231 R COG2241 Precorrin-6B methylase 1; cobalt-precorrin-6Y C5-methyltransferase complement(2104626..2105231) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247750.1 CDS cbiD NC_016860.1 2105225 2106364 R COG1903 Cobalamin biosynthesis protein CbiD; cobalt-precorrin-6A synthase complement(2105225..2106364) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247751.1 CDS cbiC NC_016860.1 2106364 2106996 R COG2082 Precorrin isomerase; cobalt-precorrin-8X methylmutase complement(2106364..2106996) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247752.1 CDS cobD NC_016860.1 2107007 2107966 R COG1270 Cobalamin biosynthesis protein CobD/CbiB; cobalamin biosynthesis protein complement(2107007..2107966) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247753.1 CDS STMDT12_C20570 NC_016860.1 2107963 2109342 R COG1797 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2107963..2109342) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247754.1 CDS STMDT12_C20580 NC_016860.1 2109940 2110851 R COG4936 Predicted sensor domain; regulatory protein PocR complement(2109940..2110851) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247755.1 CDS STMDT12_C20590 NC_016860.1 2111068 2111862 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); propanediol utilization propanediol diffusion facilitator complement(2111068..2111862) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247756.1 CDS STMDT12_C20600 NC_016860.1 2112408 2112671 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; propanediol utilization protein PduA 2112408..2112671 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247757.1 CDS STMDT12_C20610 NC_016860.1 2112668 2113480 D COG4816 Ethanolamine utilization protein; propanediol utilization protein PduB 2112668..2113480 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247758.1 CDS STMDT12_C20620 NC_016860.1 2113499 2115163 D COG4909 Propanediol dehydratase, large subunit; glycerol dehydratase large subunit 2113499..2115163 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247759.1 CDS STMDT12_C20630 NC_016860.1 2115174 2115848 D COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; propanediol dehydratase medium subunit 2115174..2115848 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247760.1 CDS STMDT12_C20640 NC_016860.1 2115863 2116384 D COG4910 Propanediol dehydratase, small subunit; propanediol dehydratase small subunit 2115863..2116384 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247761.1 CDS STMDT12_C20650 NC_016860.1 2116394 2118226 D propanediol dehydratase reactivation protein 2116394..2118226 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247762.1 CDS STMDT12_C20660 NC_016860.1 2118216 2118566 D PduH protein 2118216..2118566 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247763.1 CDS STMDT12_C20670 NC_016860.1 2118585 2118860 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; hypothetical protein 2118585..2118860 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247764.1 CDS STMDT12_C20680 NC_016860.1 2118885 2119346 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; polyhedral body protein 2118885..2119346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247765.1 CDS STMDT12_C20690 NC_016860.1 2119346 2119978 D COG4869 Propanediol utilization protein; propanediol utilization protein 2119346..2119978 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247766.1 CDS STMDT12_C20700 NC_016860.1 2119975 2120466 D propanediol utilization protein 2119975..2120466 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247767.1 CDS STMDT12_C20710 NC_016860.1 2120470 2120745 D COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; polyhedral body protein 2120470..2120745 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247768.1 CDS STMDT12_C20720 NC_016860.1 2120755 2121765 D COG2096 Uncharacterized conserved protein; PduO protein 2120755..2121765 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247769.1 CDS STMDT12_C20730 NC_016860.1 2121762 2123156 D COG1012 NAD-dependent aldehyde dehydrogenases; ethanolamine utilization protein EutE 2121762..2123156 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247770.1 CDS STMDT12_C20740 NC_016860.1 2123168 2124280 D COG1454 Alcohol dehydrogenase, class IV; propanol dehydrogenase 2123168..2124280 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247771.1 CDS STMDT12_C20750 NC_016860.1 2124277 2125632 D COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; polyhedral body protein 2124277..2125632 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247772.1 CDS STMDT12_C20760 NC_016860.1 2125635 2126189 D COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; putative propanediol utilization protein PduT 2125635..2126189 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247773.1 CDS STMDT12_C20770 NC_016860.1 2126189 2126539 D COG4810 Ethanolamine utilization protein; propanediol utilization protein PduU 2126189..2126539 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247774.1 CDS STMDT12_C20780 NC_016860.1 2126544 2126996 D COG4917 Ethanolamine utilization protein; propanediol utilization protein pduV 2126544..2126996 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247775.1 CDS STMDT12_C20790 NC_016860.1 2126981 2128195 D COG0282 Acetate kinase; propionate kinase 2126981..2128195 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247776.1 CDS STMDT12_C20800 NC_016860.1 2128253 2129155 D COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase; propanediol utilization protein 2128253..2129155 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247777.1 CDS STMDT12_C20810 NC_016860.1 2129189 2129524 R COG2926 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2129189..2129524) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247778.1 CDS STMDT12_C20820 NC_016860.1 2129769 2130827 R COG1289 Predicted membrane protein; inner membrane protein YeeA complement(2129769..2130827) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247779.1 CDS STMDT12_C20830 NC_016860.1 2130946 2131413 R COG3449 DNA gyrase inhibitor; DNA gyrase inhibitor complement(2130946..2131413) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247780.1 CDS dacD NC_016860.1 2131566 2132738 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase complement(2131566..2132738) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247781.1 CDS STMDT12_C20850 NC_016860.1 2132862 2133626 R COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); thiosulfate reductase cytochrome B subunit complement(2132862..2133626) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247782.1 CDS STMDT12_C20860 NC_016860.1 2133623 2134201 R COG0437 Fe-S-cluster-containing hydrogenase components 1; 4Fe-4S binding protein complement(2133623..2134201) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247783.1 CDS STMDT12_C20870 NC_016860.1 2134216 2136492 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; thiosulfate reductase complement(2134216..2136492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247784.1 CDS STMDT12_C20880 NC_016860.1 2137111 2139459 D COG1357 Uncharacterized low-complexity proteins; secreted effector protein 2137111..2139459 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247785.1 CDS sbcB NC_016860.1 2139802 2141232 D COG2925 Exonuclease I; exonuclease I 2139802..2141232 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247786.1 CDS STMDT12_C20900 NC_016860.1 2141368 2142726 R COG0531 Amino acid transporters; amino acid permease complement(2141368..2142726) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247787.1 CDS STMDT12_C20910 NC_016860.1 2143012 2143926 R COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(2143012..2143926) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247788.1 CDS STMDT12_C20920 NC_016860.1 2143972 2144796 R COG0451 Nucleoside-diphosphate-sugar epimerases; protein YeeZ complement(2143972..2144796) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247789.1 CDS hisG NC_016860.1 2145156 2146055 D COG0040 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 2145156..2146055 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247790.1 CDS hisD NC_016860.1 2146158 2147462 D COG0141 Histidinol dehydrogenase; histidinol dehydrogenase 2146158..2147462 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247791.1 CDS STMDT12_C20950 NC_016860.1 2147459 2148538 D COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; histidinol-phosphate aminotransferase 2147459..2148538 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247792.1 CDS STMDT12_C20960 NC_016860.1 2148535 2149602 D COG0241 Histidinol phosphatase and related phosphatases; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2148535..2149602 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247793.1 CDS hisH NC_016860.1 2149602 2150192 D COG0118 Glutamine amidotransferase; imidazole glycerol phosphate synthase subunit HisH 2149602..2150192 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247794.1 CDS STMDT12_C20980 NC_016860.1 2150192 2150929 D COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2150192..2150929 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247795.1 CDS STMDT12_C20990 NC_016860.1 2150911 2151687 D COG0107 Imidazoleglycerol-phosphate synthase; imidazole glycerol phosphate synthase subunit HisF 2150911..2151687 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247796.1 CDS STMDT12_C21000 NC_016860.1 2151681 2152292 D COG0139 Phosphoribosyl-AMP cyclohydrolase; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2151681..2152292 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247797.1 CDS STMDT12_C21010 NC_016860.1 2152373 2153356 R COG3765 Chain length determinant protein; chain length determinant protein complement(2152373..2153356) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247798.1 CDS STMDT12_C21020 NC_016860.1 2153499 2154665 R COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(2153499..2154665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247799.1 CDS STMDT12_C21030 NC_016860.1 2154902 2156308 R COG0362 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase complement(2154902..2156308) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247800.1 CDS STMDT12_C21040 NC_016860.1 2156472 2157902 R COG2148 Sugar transferases involved in lipopolysaccharide synthesis; undecaprenyl-phosphate galactose phosphotransferase complement(2156472..2157902) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247801.1 CDS STMDT12_C21050 NC_016860.1 2157974 2159407 R COG1109 Phosphomannomutase; phosphomannomutase complement(2157974..2159407) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247802.1 CDS STMDT12_C21060 NC_016860.1 2159394 2160833 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(2159394..2160833) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247803.1 CDS STMDT12_C21070 NC_016860.1 2160834 2161778 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative rhamnosyltransferase complement(2160834..2161778) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247804.1 CDS STMDT12_C21080 NC_016860.1 2161779 2162840 R COG0438 Glycosyltransferase; putative glycosyl transferase complement(2161779..2162840) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247805.1 CDS STMDT12_C21090 NC_016860.1 2163160 2164161 R COG0463 Glycosyltransferases involved in cell wall biogenesis; O antigen biosynthesis abequosyltransferase RfbV complement(2163160..2164161) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247806.1 CDS STMDT12_C21100 NC_016860.1 2164166 2165071 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; putative O-antigen transporter complement(2164166..2165071) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247807.1 CDS STMDT12_C21110 NC_016860.1 2165540 2166439 R COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-abequose synthase complement(2165540..2166439) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247808.1 CDS STMDT12_C21120 NC_016860.1 2166467 2167780 R COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; lipopolysaccharide biosynthesis protein RfbH complement(2166467..2167780) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247809.1 CDS STMDT12_C21130 NC_016860.1 2167807 2168886 R COG0451 Nucleoside-diphosphate-sugar epimerases; CDP-glucose 4,6-dehydratase complement(2167807..2168886) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247810.1 CDS STMDT12_C21140 NC_016860.1 2168891 2169664 R glucose-1-phosphate cytidylyltransferase complement(2168891..2169664) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247811.1 CDS STMDT12_C21150 NC_016860.1 2169661 2170653 R COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2169661..2170653) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247812.1 CDS STMDT12_C21160 NC_016860.1 2170659 2171207 R COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2170659..2171207) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247813.1 CDS STMDT12_C21170 NC_016860.1 2171211 2172089 R COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase complement(2171211..2172089) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247814.1 CDS STMDT12_C21180 NC_016860.1 2172137 2173036 R COG1091 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(2172137..2173036) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247815.1 CDS STMDT12_C21190 NC_016860.1 2173057 2174121 R COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(2173057..2174121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247816.1 CDS STMDT12_C21200 NC_016860.1 2174498 2175391 R COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalF complement(2174498..2175391) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247817.1 CDS wcaM NC_016860.1 2175569 2176972 R putative colanic acid biosynthesis protein complement(2175569..2176972) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247818.1 CDS STMDT12_C21220 NC_016860.1 2176983 2178203 R COG0438 Glycosyltransferase; putative glycosyl transferase complement(2176983..2178203) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247819.1 CDS STMDT12_C21230 NC_016860.1 2178200 2179480 R COG2327 Uncharacterized conserved protein; putative pyruvyl transferase complement(2178200..2179480) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247820.1 CDS STMDT12_C21240 NC_016860.1 2179502 2180980 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; colanic acid exporter complement(2179502..2180980) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247821.1 CDS STMDT12_C21250 NC_016860.1 2181113 2182507 R COG2148 Sugar transferases involved in lipopolysaccharide synthesis; putative UDP-glucose lipid carrier transferase complement(2181113..2182507) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247822.1 CDS STMDT12_C21260 NC_016860.1 2182561 2183931 R COG1109 Phosphomannomutase; phosphomannomutase complement(2182561..2183931) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247823.1 CDS STMDT12_C21270 NC_016860.1 2184042 2185484 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase complement(2184042..2185484) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247824.1 CDS STMDT12_C21280 NC_016860.1 2185481 2186704 R COG0438 Glycosyltransferase; putative glycosyl transferase complement(2185481..2186704) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247825.1 CDS STMDT12_C21290 NC_016860.1 2186701 2187174 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hypothetical protein complement(2186701..2187174) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247826.1 CDS STMDT12_C21300 NC_016860.1 2187177 2188142 R COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-L-fucose synthetase complement(2187177..2188142) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247827.1 CDS STMDT12_C21310 NC_016860.1 2188145 2189266 R COG1089 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase complement(2188145..2189266) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247828.1 CDS STMDT12_C21320 NC_016860.1 2189290 2189844 R COG0110 Acetyltransferase (isoleucine patch superfamily); putative colanic acid biosynthesis acetyltransferase WcaF complement(2189290..2189844) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247829.1 CDS STMDT12_C21330 NC_016860.1 2189860 2190606 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyl transferase complement(2189860..2190606) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247830.1 CDS wcaD NC_016860.1 2190619 2191833 R putative colanic acid biosynthesis protein complement(2190619..2191833) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247831.1 CDS STMDT12_C21350 NC_016860.1 2191808 2193025 R COG0438 Glycosyltransferase; putative glycosyl transferase complement(2191808..2193025) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247832.1 CDS STMDT12_C21360 NC_016860.1 2193022 2193510 R COG1045 Serine acetyltransferase; putative colanic acid biosynthesis acetyltransferase WcaB complement(2193022..2193510) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247833.1 CDS STMDT12_C21370 NC_016860.1 2193513 2194355 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyl transferase complement(2193513..2194355) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247834.1 CDS STMDT12_C21380 NC_016860.1 2194442 2196601 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; tyrosine kinase complement(2194442..2196601) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247835.1 CDS STMDT12_C21390 NC_016860.1 2196598 2197047 R COG0394 Protein-tyrosine-phosphatase; tyrosine phosphatase complement(2196598..2197047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247836.1 CDS STMDT12_C21400 NC_016860.1 2197053 2198099 R COG1596 Periplasmic protein involved in polysaccharide export; hypothetical protein complement(2197053..2198099) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247837.1 CDS STMDT12_C21410 NC_016860.1 2198867 2200447 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 2198867..2200447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247838.1 CDS STMDT12_C21420 NC_016860.1 2200533 2202389 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; putative assembly protein complement(2200533..2202389) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247839.1 CDS dcd NC_016860.1 2202428 2203009 R COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase complement(2202428..2203009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247840.1 CDS STMDT12_C21440 NC_016860.1 2203100 2203741 R COG0572 Uridine kinase; uridine kinase complement(2203100..2203741) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247841.1 CDS STMDT12_C21450 NC_016860.1 2203817 2203987 R hypothetical protein complement(2203817..2203987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247842.1 CDS STMDT12_C21460 NC_016860.1 2204072 2207062 D COG2202 FOG: PAS/PAC domain; diguanylate cyclase 2204072..2207062 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247843.1 CDS STMDT12_C21470 NC_016860.1 2207030 2207899 R COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; 3-methyladenine DNA glycosylase complement(2207030..2207899) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247844.1 CDS STMDT12_C21480 NC_016860.1 2208033 2209385 D COG0443 Molecular chaperone; putative chaperone 2208033..2209385 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247845.1 CDS STMDT12_C21490 NC_016860.1 2209826 2211067 D COG0845 Membrane-fusion protein; multidrug efflux system subunit MdtA 2209826..2211067 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247846.1 CDS STMDT12_C21500 NC_016860.1 2211067 2214189 D COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtB 2211067..2214189 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247847.1 CDS STMDT12_C21510 NC_016860.1 2214190 2217270 D COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtC 2214190..2217270 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247848.1 CDS STMDT12_C21520 NC_016860.1 2217267 2218679 D COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtE 2217267..2218679 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247849.1 CDS STMDT12_C21530 NC_016860.1 2218679 2220082 D COG0642 Signal transduction histidine kinase; two-component sensor kinase BaeS 2218679..2220082 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247850.1 CDS STMDT12_C21540 NC_016860.1 2220079 2220801 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BaeR 2220079..2220801 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247851.1 CDS STMDT12_C21550 NC_016860.1 2221070 2222272 D COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; hypothetical protein 2221070..2222272 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247852.1 CDS STMDT12_C21560 NC_016860.1 2222272 2222988 D putative inner membrane protein 2222272..2222988 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247853.1 CDS STMDT12_C21570 NC_016860.1 2222999 2225110 D putative inner membrane protein 2222999..2225110 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247854.1 CDS STMDT12_C21580 NC_016860.1 2225226 2226587 D COG0826 Collagenase and related proteases; peptidase U32 family protein 2225226..2226587 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247855.1 CDS STMDT12_C21590 NC_016860.1 2227194 2228084 D putative cytoplasmic protein 2227194..2228084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247856.1 CDS STMDT12_C21600 NC_016860.1 2228120 2228536 R putative cytoplasmic protein complement(2228120..2228536) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247857.1 CDS STMDT12_C21610 NC_016860.1 2229555 2230454 D COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; lipid kinase 2229555..2230454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247858.1 CDS STMDT12_C21620 NC_016860.1 2230507 2231559 R COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; fructose-bisphosphate aldolase complement(2230507..2231559) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247859.1 CDS STMDT12_C21630 NC_016860.1 2231813 2233084 D COG0477 Permeases of the major facilitator superfamily; putative nucleoside permease 2231813..2233084 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247860.1 CDS STMDT12_C21640 NC_016860.1 2233081 2234085 D COG1397 ADP-ribosylglycohydrolase; putative glycohydrolase 2233081..2234085 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247861.1 CDS STMDT12_C21650 NC_016860.1 2234082 2235047 D COG0524 Sugar kinases, ribokinase family; PfkB family protein 2234082..2235047 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247862.1 CDS STMDT12_C21660 NC_016860.1 2235021 2235767 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(2235021..2235767) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247863.1 CDS STMDT12_C21670 NC_016860.1 2235803 2236603 R COG0351 Hydroxymethylpyrimidine/ phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(2235803..2236603) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247864.1 CDS STMDT12_C21680 NC_016860.1 2236590 2237387 R COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase complement(2236590..2237387) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247865.1 CDS STMDT12_C21690 NC_016860.1 2237797 2238111 D COG5455 Predicted integral membrane protein; hypothetical protein 2237797..2238111 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247866.1 CDS STMDT12_C21700 NC_016860.1 2238374 2239381 R putative outer membrane lipoprotein complement(2238374..2239381) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247867.1 CDS STMDT12_C21710 NC_016860.1 2239397 2241886 R COG3188 P pilus assembly protein, porin PapC; putative outer membrane protein complement(2239397..2241886) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247868.1 CDS STMDT12_C21720 NC_016860.1 2241900 2242583 R COG3121 P pilus assembly protein, chaperone PapD; putative periplasmic chaperone protein complement(2241900..2242583) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247869.1 CDS STMDT12_C21730 NC_016860.1 2242639 2243169 R putative fimbrial protein complement(2242639..2243169) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247870.1 CDS STMDT12_C21740 NC_016860.1 2243448 2243729 R hypothetical protein complement(2243448..2243729) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247871.1 CDS STMDT12_C21750 NC_016860.1 2244007 2245116 R COG0489 ATPases involved in chromosome partitioning; putative ATPase complement(2244007..2245116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247872.1 CDS metG NC_016860.1 2245281 2247314 D COG0143 Methionyl-tRNA synthetase; methionyl-tRNA synthetase 2245281..2247314 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247873.1 CDS STMDT12_C21770 NC_016860.1 2247555 2248013 D COG4808 Uncharacterized protein conserved in bacteria; putative lipoprotein 2247555..2248013 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247874.1 CDS STMDT12_C21780 NC_016860.1 2248185 2248715 D COG4808 Uncharacterized protein conserved in bacteria; hypothetical protein 2248185..2248715 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247875.1 CDS STMDT12_C21790 NC_016860.1 2248772 2249296 R COG4807 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2248772..2249296) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247876.1 CDS STMDT12_C21800 NC_016860.1 2249286 2250005 R COG3279 Response regulator of the LytR/AlgR family; putative two-component response regulator YehT complement(2249286..2250005) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247877.1 CDS STMDT12_C21810 NC_016860.1 2250002 2251687 R COG3275 Putative regulator of cell autolysis; putative two-component sensor kinase complement(2250002..2251687) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247878.1 CDS STMDT12_C21820 NC_016860.1 2251910 2252641 D COG0789 Predicted transcriptional regulators; HTH-type transcriptional regulator MlrA 2251910..2252641 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247879.1 CDS STMDT12_C21830 NC_016860.1 2252701 2252808 D hypothetical protein 2252701..2252808 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247880.1 CDS STMDT12_C21840 NC_016860.1 2252789 2253520 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; putative proline/glycine betaine ABC transporter permease protein complement(2252789..2253520) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247881.1 CDS STMDT12_C21850 NC_016860.1 2253504 2254451 R COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; glycine betaine/carnitine/choline ABC transporter ATP-binding protein opuCA complement(2253504..2254451) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247882.1 CDS STMDT12_C21860 NC_016860.1 2254444 2255613 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; hypothetical protein complement(2254444..2255613) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247883.1 CDS STMDT12_C21870 NC_016860.1 2255617 2256534 R COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); amine ABC transporter substrate binding protein complement(2255617..2256534) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247884.1 CDS STMDT12_C21880 NC_016860.1 2256715 2259012 R COG1472 Beta-glucosidase-related glycosidases; periplasmic beta-D-glucoside glucohydrolase complement(2256715..2259012) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247885.1 CDS STMDT12_C21890 NC_016860.1 2259279 2261009 D COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 2259279..2261009 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247886.1 CDS pbpG NC_016860.1 2261067 2262014 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine endopeptidase complement(2261067..2262014) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247887.1 CDS STMDT12_C21910 NC_016860.1 2262180 2262767 R inner membrane protein YohC complement(2262180..2262767) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247888.1 CDS STMDT12_C21920 NC_016860.1 2262926 2263495 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 2262926..2263495 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247889.1 CDS STMDT12_C21930 NC_016860.1 2263544 2264305 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); acetoin dehydrogenase complement(2263544..2264305) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247890.1 CDS STMDT12_C21940 NC_016860.1 2264371 2265807 R COG1538 Outer membrane protein; multidrug resistance outer membrane protein MdtQ complement(2264371..2265807) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247891.1 CDS STMDT12_C21950 NC_016860.1 2266266 2267204 R COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase C complement(2266266..2267204) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247892.1 CDS STMDT12_C21960 NC_016860.1 2267313 2268506 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; salicylate hydroxylase complement(2267313..2268506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247893.1 CDS STMDT12_C21970 NC_016860.1 2268521 2269165 R COG0625 Glutathione S-transferase; maleylacetoacetate isomerase complement(2268521..2269165) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247894.1 CDS STMDT12_C21980 NC_016860.1 2269174 2269875 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); FAA-hydrolase-family protein complement(2269174..2269875) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247895.1 CDS STMDT12_C21990 NC_016860.1 2269891 2270928 R COG3435 Gentisate 1,2-dioxygenase; gentisate 1,2-dioxygenase complement(2269891..2270928) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247896.1 CDS STMDT12_C22000 NC_016860.1 2270940 2272298 R COG0477 Permeases of the major facilitator superfamily; 4-hydroxybenzoate transporter complement(2270940..2272298) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247897.1 CDS STMDT12_C22010 NC_016860.1 2272424 2273332 D COG0583 Transcriptional regulator; putative transcriptional regulator 2272424..2273332 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247898.1 CDS STMDT12_C22020 NC_016860.1 2273464 2273862 D COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 2273464..2273862 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247899.1 CDS STMDT12_C22030 NC_016860.1 2273859 2274554 D COG1346 Putative effector of murein hydrolase; hypothetical protein 2273859..2274554 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247900.1 CDS STMDT12_C22040 NC_016860.1 2274708 2275592 D COG0295 Cytidine deaminase; cytidine deaminase 2274708..2275592 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247901.1 CDS STMDT12_C22050 NC_016860.1 2275769 2276488 D COG2949 Uncharacterized membrane protein; hypothetical protein 2275769..2276488 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247902.1 CDS STMDT12_C22060 NC_016860.1 2276485 2276730 D hypothetical protein 2276485..2276730 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247903.1 CDS STMDT12_C22070 NC_016860.1 2276935 2278176 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; putative oxidoreductase 2276935..2278176 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247904.1 CDS STMDT12_C22080 NC_016860.1 2278170 2279405 D COG0167 Dihydroorotate dehydrogenase; dihydropyrimidine dehydrogenase 2278170..2279405 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247905.1 CDS mglC NC_016860.1 2279480 2280490 R COG4211 ABC-type glucose/galactose transport system, permease component; beta-methylgalactoside ABC transporter permease protein complement(2279480..2280490) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247906.1 CDS STMDT12_C22100 NC_016860.1 2280506 2282026 R COG1129 ABC-type sugar transport system, ATPase component; galactose/methyl galaxtoside ABC transporter ATP-binding protein complement(2280506..2282026) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247907.1 CDS STMDT12_C22110 NC_016860.1 2282160 2283158 R COG1879 ABC-type sugar transport system, periplasmic component; D-galactose ABC transporter substrate binding protein complement(2282160..2283158) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247908.1 CDS STMDT12_C22120 NC_016860.1 2283657 2284679 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalS complement(2283657..2284679) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247909.1 CDS STMDT12_C22130 NC_016860.1 2284829 2285971 R COG2311 Predicted membrane protein; hypothetical protein complement(2284829..2285971) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247910.1 CDS folE NC_016860.1 2285986 2286654 R COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I complement(2285986..2286654) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247911.1 CDS STMDT12_C22150 NC_016860.1 2286984 2287841 D COG0627 Predicted esterase; S-formylglutathione hydrolase 2286984..2287841 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247912.1 CDS STMDT12_C22160 NC_016860.1 2287830 2288219 R COG1396 Predicted transcriptional regulators; putative transcriptional regulator complement(2287830..2288219) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247913.1 CDS STMDT12_C22170 NC_016860.1 2288224 2289591 R COG1760 L-serine deaminase; L-serine ammonia-lyase complement(2288224..2289591) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247914.1 CDS STMDT12_C22180 NC_016860.1 2289808 2290695 D COG0560 Phosphoserine phosphatase; putative phosphoserine phosphatase 2289808..2290695 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247915.1 CDS STMDT12_C22190 NC_016860.1 2290728 2292050 D COG2271 Sugar phosphate permease; putative regulatory protein 2290728..2292050 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247916.1 CDS STMDT12_C22200 NC_016860.1 2292094 2294046 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; colicin I receptor complement(2292094..2294046) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247917.1 CDS STMDT12_C22210 NC_016860.1 2294431 2295900 R COG0833 Amino acid transporters; lysine transporter complement(2294431..2295900) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247918.1 CDS STMDT12_C22220 NC_016860.1 2296090 2296953 R COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(2296090..2296953) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247919.1 CDS STMDT12_C22230 NC_016860.1 2297074 2298123 D COG2855 Predicted membrane protein; putative inner membrane protein 2297074..2298123 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247920.1 CDS STMDT12_C22240 NC_016860.1 2298202 2299059 D COG0648 Endonuclease IV; endonuclease IV 2298202..2299059 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247921.1 CDS STMDT12_C22250 NC_016860.1 2299124 2300812 R COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB; fructose-specific PTS system IIBC protein complement(2299124..2300812) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247922.1 CDS fruK NC_016860.1 2300829 2301767 R COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase complement(2300829..2301767) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247923.1 CDS STMDT12_C22270 NC_016860.1 2301767 2302897 R COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; bifunctional fructose-specific PTS system IIA/HPr protein complement(2301767..2302897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247924.1 CDS STMDT12_C22280 NC_016860.1 2303266 2304447 D COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter B 2303266..2304447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247925.1 CDS STMDT12_C22290 NC_016860.1 2304512 2305177 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; putative inner membrane protein complement(2304512..2305177) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247926.1 CDS STMDT12_C22300 NC_016860.1 2305689 2305967 R COG0727 Predicted Fe-S-cluster oxidoreductase; protein YeiW complement(2305689..2305967) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247927.1 CDS STMDT12_C22310 NC_016860.1 2306267 2306839 D elongation factor P 2306267..2306839 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247928.1 CDS STMDT12_C22320 NC_016860.1 2307052 2308038 D COG0523 Putative GTPases (G3E family); cobalamin synthesis protein 2307052..2308038 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247929.1 CDS STMDT12_C22330 NC_016860.1 2308074 2308787 D COG0671 Membrane-associated phospholipid phosphatase; putative permease 2308074..2308787 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247930.1 CDS spr NC_016860.1 2309201 2309773 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative outer membrane lipoprotein 2309201..2309773 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247931.1 CDS STMDT12_C22350 NC_016860.1 2310099 2311655 D COG2200 FOG: EAL domain; hypothetical protein 2310099..2311655 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247932.1 CDS STMDT12_C22360 NC_016860.1 2311762 2313567 D COG4166 ABC-type oligopeptide transport system, periplasmic component; putative ABC transporter substrate binding protein 2311762..2313567 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247933.1 CDS STMDT12_C22370 NC_016860.1 2313577 2314671 D COG4174 ABC-type uncharacterized transport system, permease component; ABC transporter permease protein YejB 2313577..2314671 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247934.1 CDS STMDT12_C22380 NC_016860.1 2314671 2315696 D COG4239 ABC-type uncharacterized transport system, permease component; putative dipeptide/oligopeptide/nickel ABC transporter permease protein 2314671..2315696 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247935.1 CDS STMDT12_C22390 NC_016860.1 2315698 2317287 D COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; putative ABC transporter ATP-binding protein 2315698..2317287 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247936.1 CDS STMDT12_C22400 NC_016860.1 2317291 2317635 R hypothetical protein complement(2317291..2317635) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247937.1 CDS STMDT12_C22410 NC_016860.1 2317931 2318029 R hypothetical protein complement(2317931..2318029) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247938.1 CDS STMDT12_C22420 NC_016860.1 2318026 2319216 R COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein complement(2318026..2319216) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247939.1 CDS STMDT12_C22430 NC_016860.1 2319244 2319939 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 16S rRNA pseudouridylate synthase A complement(2319244..2319939) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247940.1 CDS STMDT12_C22440 NC_016860.1 2320091 2321851 D COG1061 DNA or RNA helicases of superfamily II; putative helicase 2320091..2321851 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247941.1 CDS rplY NC_016860.1 2321976 2322260 D COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25 2321976..2322260 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247942.1 CDS STMDT12_C22460 NC_016860.1 2322369 2322989 R putative inner membrane protein complement(2322369..2322989) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247943.1 CDS STMDT12_C22470 NC_016860.1 2323017 2324024 R COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA complement(2323017..2324024) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247944.1 CDS STMDT12_C22480 NC_016860.1 2324204 2324431 D COG3082 Uncharacterized protein conserved in bacteria; hypothetical protein 2324204..2324431 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247945.1 CDS STMDT12_C22490 NC_016860.1 2324463 2326223 D COG3083 Predicted hydrolase of alkaline phosphatase superfamily; inner membrane protein YejM 2324463..2326223 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247946.1 CDS STMDT12_C22500 NC_016860.1 2326504 2327175 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD complement(2326504..2327175) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247947.1 CDS STMDT12_C22510 NC_016860.1 2327035 2327325 D virulence protein 2327035..2327325 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247948.1 CDS STMDT12_C22520 NC_016860.1 2327280 2327405 R hypothetical protein complement(2327280..2327405) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247949.1 CDS STMDT12_C22530 NC_016860.1 2327673 2329502 D COG1835 Predicted acyltransferases; hypothetical protein 2327673..2329502 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247950.1 CDS STMDT12_C22540 NC_016860.1 2329556 2329999 R hypothetical protein complement(2329556..2329999) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247951.1 CDS STMDT12_C22550 NC_016860.1 2330377 2330904 R hypothetical protein complement(2330377..2330904) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247952.1 CDS STMDT12_C22560 NC_016860.1 2330907 2332148 R hypothetical protein complement(2330907..2332148) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247953.1 CDS STMDT12_C22570 NC_016860.1 2332209 2332727 R COG3740 Phage head maturation protease; phage prohead protease, HK97 family protein complement(2332209..2332727) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247954.1 CDS STMDT12_C22580 NC_016860.1 2332741 2333070 R phage holin, lambda family protein complement(2332741..2333070) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247955.1 CDS STMDT12_C22590 NC_016860.1 2333367 2334698 D COG4928 Predicted P-loop ATPase; hypothetical protein 2333367..2334698 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247956.1 CDS STMDT12_C22600 NC_016860.1 2334727 2335092 R putative phage antiterminator complement(2334727..2335092) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247957.1 CDS STMDT12_C22610 NC_016860.1 2335110 2336105 R putative cytoplasmic protein complement(2335110..2336105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247958.1 CDS STMDT12_C22620 NC_016860.1 2336107 2336337 R hypothetical protein complement(2336107..2336337) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247959.1 CDS STMDT12_C22630 NC_016860.1 2336428 2338794 R COG4886 Leucine-rich repeat (LRR) protein; leucine-rich repeat protein complement(2336428..2338794) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247960.1 CDS STMDT12_C22640 NC_016860.1 2339112 2339231 R hypothetical protein complement(2339112..2339231) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247961.1 CDS STMDT12_C22650 NC_016860.1 2339463 2340254 R side tail fiber protein complement(2339463..2340254) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247962.1 CDS STMDT12_C22660 NC_016860.1 2340383 2340760 D hypothetical protein 2340383..2340760 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247963.1 CDS STMDT12_C22670 NC_016860.1 2340952 2341509 R hypothetical protein complement(2340952..2341509) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247964.1 CDS STMDT12_C22680 NC_016860.1 2342245 2342892 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarP 2342245..2342892 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247965.1 CDS STMDT12_C22690 NC_016860.1 2342936 2343979 R COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; hypothetical protein complement(2342936..2343979) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247966.1 CDS STMDT12_C22700 NC_016860.1 2343976 2344533 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE complement(2343976..2344533) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247967.1 CDS STMDT12_C22710 NC_016860.1 2344530 2346461 R COG1138 Cytochrome c biogenesis factor; cytochrome c-type biogenesis protein CcmF complement(2344530..2346461) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247968.1 CDS STMDT12_C22720 NC_016860.1 2346458 2346937 R COG2332 Cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE complement(2346458..2346937) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247969.1 CDS STMDT12_C22730 NC_016860.1 2346934 2347146 R COG3114 Heme exporter protein D; heme exporter protein D complement(2346934..2347146) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247970.1 CDS STMDT12_C22740 NC_016860.1 2347143 2347880 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein complement(2347143..2347880) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247971.1 CDS STMDT12_C22750 NC_016860.1 2347932 2348588 R COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein B1 complement(2347932..2348588) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247972.1 CDS STMDT12_C22760 NC_016860.1 2348588 2349205 R COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA complement(2348588..2349205) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247973.1 CDS STMDT12_C22770 NC_016860.1 2349226 2349828 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein NapC complement(2349226..2349828) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247974.1 CDS napB NC_016860.1 2349838 2350287 R COG3043 Nitrate reductase cytochrome c-type subunit; citrate reductase cytochrome c-type subunit complement(2349838..2350287) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247975.1 CDS napH NC_016860.1 2350403 2351272 R COG0348 Polyferredoxin; quinol dehydrogenase membrane component complement(2350403..2351272) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247976.1 CDS napG NC_016860.1 2351259 2351954 R COG1145 Ferredoxin; quinol dehydrogenase periplasmic component complement(2351259..2351954) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247977.1 CDS STMDT12_C22810 NC_016860.1 2351961 2354447 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; nitrate reductase catalytic subunit complement(2351961..2354447) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247978.1 CDS STMDT12_C22820 NC_016860.1 2354444 2354707 R COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase; periplasmic nitrate reductase complement(2354444..2354707) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247979.1 CDS STMDT12_C22830 NC_016860.1 2354697 2355188 R COG1145 Ferredoxin; ferredoxin-type protein complement(2354697..2355188) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247980.1 CDS STMDT12_C22840 NC_016860.1 2355602 2356096 D COG4574 Serine protease inhibitor ecotin; ecotin 2355602..2356096 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247981.1 CDS STMDT12_C22850 NC_016860.1 2356305 2357948 R COG4615 ABC-type siderophore export system, fused ATPase and permease components; multidrug ABC transporter permease/ATP-binding protein complement(2356305..2357948) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247982.1 CDS alkB NC_016860.1 2358024 2358674 R COG3145 Alkylated DNA repair protein; alpha-ketoglutarate-dependent dioxygenase AlkB complement(2358024..2358674) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247983.1 CDS STMDT12_C22870 NC_016860.1 2358677 2359735 R COG2169 Adenosine deaminase; O6-methylguanine-DNA methyltransferase/transcription activator/repressor complement(2358677..2359735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247984.1 CDS STMDT12_C22880 NC_016860.1 2359819 2360871 R COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; thiamine biosynthesis lipoprotein ApbE complement(2359819..2360871) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247985.1 CDS STMDT12_C22890 NC_016860.1 2360986 2362122 R COG3203 Outer membrane protein (porin); outer membrane porin C complement(2360986..2362122) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247986.1 CDS STMDT12_C22900 NC_016860.1 2362923 2365520 D COG0642 Signal transduction histidine kinase; two-component phosphotransfer intermediate protein 2362923..2365520 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247987.1 CDS STMDT12_C22910 NC_016860.1 2365537 2366187 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator RcsB 2365537..2366187 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247988.1 CDS STMDT12_C22920 NC_016860.1 2366290 2369136 R COG0642 Signal transduction histidine kinase; hybrid two-component sensor kinase complement(2366290..2369136) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247989.1 CDS STMDT12_C22930 NC_016860.1 2369254 2371890 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A complement(2369254..2371890) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247990.1 CDS STMDT12_C22940 NC_016860.1 2372300 2373502 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative dehydratase complement(2372300..2373502) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247991.1 CDS STMDT12_C22950 NC_016860.1 2373517 2374842 R COG0477 Permeases of the major facilitator superfamily; putative permease complement(2373517..2374842) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247992.1 CDS STMDT12_C22960 NC_016860.1 2375081 2375776 D COG1802 Transcriptional regulators; GntR family transcriptional regulator 2375081..2375776 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247993.1 CDS STMDT12_C22970 NC_016860.1 2375859 2376587 D COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase; 3-demethylubiquinone-9 3-methyltransferase 2375859..2376587 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247994.1 CDS STMDT12_C22980 NC_016860.1 2376943 2379228 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 2376943..2379228 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247995.1 CDS nrdB NC_016860.1 2379341 2380471 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 2379341..2380471 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247996.1 CDS STMDT12_C23000 NC_016860.1 2380471 2380725 D COG0633 Ferredoxin; 2Fe-2S ferredoxin 2380471..2380725 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247997.1 CDS STMDT12_C23010 NC_016860.1 2380727 2381917 R COG0477 Permeases of the major facilitator superfamily; putative permease complement(2380727..2381917) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247998.1 CDS STMDT12_C23020 NC_016860.1 2382079 2382957 D COG0583 Transcriptional regulator; putative transcriptional regulator 2382079..2382957 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005247999.1 CDS glpQ NC_016860.1 2383073 2384143 R COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(2383073..2384143) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248000.1 CDS glpT NC_016860.1 2384148 2385506 R COG2271 Sugar phosphate permease; sn-glycerol-3-phosphate transporter complement(2384148..2385506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248001.1 CDS glpA NC_016860.1 2385779 2387407 D COG0578 Glycerol-3-phosphate dehydrogenase; sn-glycerol-3-phosphate dehydrogenase subunit A 2385779..2387407 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248002.1 CDS STMDT12_C23060 NC_016860.1 2387397 2388656 D COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2387397..2388656 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248003.1 CDS glpC NC_016860.1 2388653 2389843 D COG0247 Fe-S oxidoreductase; sn-glycerol-3-phosphate dehydrogenase subunit C 2388653..2389843 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248004.1 CDS STMDT12_C23080 NC_016860.1 2390269 2391291 D deubiquitinase 2390269..2391291 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248005.1 CDS STMDT12_C23090 NC_016860.1 2391401 2391577 R hypothetical protein complement(2391401..2391577) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248006.1 CDS STMDT12_C23100 NC_016860.1 2391583 2392386 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; putative aldolase complement(2391583..2392386) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248007.1 CDS STMDT12_C23110 NC_016860.1 2392412 2393701 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(2392412..2393701) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248008.1 CDS STMDT12_C23120 NC_016860.1 2393757 2394962 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative galactonate dehydratase complement(2393757..2394962) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248009.1 CDS STMDT12_C23130 NC_016860.1 2394976 2395758 R COG1414 Transcriptional regulator; putative transcriptional regulator complement(2394976..2395758) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248010.1 CDS STMDT12_C23140 NC_016860.1 2396008 2397204 R COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; competence damage-inducible protein A complement(2396008..2397204) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248011.1 CDS STMDT12_C23150 NC_016860.1 2397319 2397993 R putative inner membrane protein complement(2397319..2397993) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248012.1 CDS STMDT12_C23160 NC_016860.1 2398140 2398565 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hydrolase, nudix family protein 2398140..2398565 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248013.1 CDS STMDT12_C23170 NC_016860.1 2398610 2399215 R Ais protein complement(2398610..2399215) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248014.1 CDS STMDT12_C23180 NC_016860.1 2399514 2400653 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2399514..2400653 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248015.1 CDS STMDT12_C23190 NC_016860.1 2400656 2401639 D COG0463 Glycosyltransferases involved in cell wall biogenesis; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2400656..2401639 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248016.1 CDS STMDT12_C23200 NC_016860.1 2401636 2403618 D COG0223 Methionyl-tRNA formyltransferase; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2401636..2403618 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248017.1 CDS STMDT12_C23210 NC_016860.1 2403615 2404514 D COG0726 Predicted xylanase/chitin deacetylase; putative cytoplasmic protein 2403615..2404514 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248018.1 CDS arnT NC_016860.1 2404511 2406157 D COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; 4-amino-4-deoxy-L-arabinose transferase 2404511..2406157 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248019.1 CDS STMDT12_C23230 NC_016860.1 2406154 2406489 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; inner membrane protein YfbW 2406154..2406489 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248020.1 CDS STMDT12_C23240 NC_016860.1 2406489 2406866 D hypothetical protein 2406489..2406866 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248021.1 CDS STMDT12_C23250 NC_016860.1 2406861 2407118 R polymyxin resistance protein B complement(2406861..2407118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248022.1 CDS STMDT12_C23260 NC_016860.1 2407216 2408583 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; O-succinylbenzoic acid--CoA ligase complement(2407216..2408583) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248023.1 CDS STMDT12_C23270 NC_016860.1 2408580 2409542 R COG1441 O-succinylbenzoate synthase; O-succinylbenzoate synthase complement(2408580..2409542) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248024.1 CDS STMDT12_C23280 NC_016860.1 2409542 2410399 R COG0447 Dihydroxynaphthoic acid synthase; naphthoate synthase complement(2409542..2410399) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248025.1 CDS STMDT12_C23290 NC_016860.1 2410414 2411172 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); acyl-CoA thioester hydrolase YfbB complement(2410414..2411172) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248026.1 CDS STMDT12_C23300 NC_016860.1 2411169 2412839 R COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2411169..2412839) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248027.1 CDS STMDT12_C23310 NC_016860.1 2412925 2414220 R COG1169 Isochorismate synthase; menaquinone-specific isochorismate synthase complement(2412925..2414220) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248028.1 CDS STMDT12_C23320 NC_016860.1 2414321 2414626 R COG4575 Uncharacterized conserved protein; hypothetical protein complement(2414321..2414626) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248029.1 CDS STMDT12_C23330 NC_016860.1 2414681 2415142 R COG2153 Predicted acyltransferase; hypothetical protein complement(2414681..2415142) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248030.1 CDS STMDT12_C23340 NC_016860.1 2415203 2416120 D COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease Z 2415203..2416120 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248031.1 CDS STMDT12_C23350 NC_016860.1 2416186 2417187 D COG0835 Chemotaxis signal transduction protein; chemotaxis signal transduction protein 2416186..2417187 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248032.1 CDS STMDT12_C23360 NC_016860.1 2417228 2419009 R COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein complement(2417228..2419009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248033.1 CDS STMDT12_C23370 NC_016860.1 2419120 2419239 R hypothetical protein complement(2419120..2419239) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248034.1 CDS STMDT12_C23380 NC_016860.1 2419897 2421354 R COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH dehydrogenase subunit N complement(2419897..2421354) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248035.1 CDS STMDT12_C23390 NC_016860.1 2421361 2422890 R COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M complement(2421361..2422890) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248036.1 CDS STMDT12_C23400 NC_016860.1 2423204 2425045 R COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH dehydrogenase subunit L complement(2423204..2425045) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248037.1 CDS STMDT12_C23410 NC_016860.1 2425042 2425344 R COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH dehydrogenase subunit K complement(2425042..2425344) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248038.1 CDS STMDT12_C23420 NC_016860.1 2425341 2425895 R COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH dehydrogenase subunit J complement(2425341..2425895) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248039.1 CDS STMDT12_C23430 NC_016860.1 2425906 2426448 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I complement(2425906..2426448) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248040.1 CDS STMDT12_C23440 NC_016860.1 2426463 2427440 R COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH dehydrogenase subunit H complement(2426463..2427440) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248041.1 CDS STMDT12_C23450 NC_016860.1 2427437 2430163 R COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G complement(2427437..2430163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248042.1 CDS STMDT12_C23460 NC_016860.1 2430194 2431531 R COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase subunit F complement(2430194..2431531) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248043.1 CDS STMDT12_C23470 NC_016860.1 2431528 2432028 R COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; NADH dehydrogenase subunit E complement(2431528..2432028) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248044.1 CDS STMDT12_C23480 NC_016860.1 2432031 2433833 R COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2432031..2433833) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248045.1 CDS STMDT12_C23490 NC_016860.1 2433920 2434582 R COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B complement(2433920..2434582) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248046.1 CDS STMDT12_C23500 NC_016860.1 2434598 2435041 R COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH dehydrogenase subunit A complement(2434598..2435041) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248047.1 CDS STMDT12_C23510 NC_016860.1 2435668 2436606 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2435668..2436606) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248048.1 CDS STMDT12_C23520 NC_016860.1 2437538 2438752 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase AlaT 2437538..2438752 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248049.1 CDS STMDT12_C23530 NC_016860.1 2438846 2439445 D COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 2438846..2439445 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248050.1 CDS STMDT12_C23540 NC_016860.1 2439537 2441363 R COG0471 Di- and tricarboxylate transporters; citrate transporter complement(2439537..2441363) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248051.1 CDS STMDT12_C23550 NC_016860.1 2441440 2442099 R COG0637 Predicted phosphatase/phosphohexomutase; putative phosphatase complement(2441440..2442099) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248052.1 CDS STMDT12_C23560 NC_016860.1 2442110 2442604 R COG3013 Uncharacterized conserved protein; hypothetical protein complement(2442110..2442604) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248053.1 CDS STMDT12_C23570 NC_016860.1 2442687 2443142 R COG3092 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2442687..2443142) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248054.1 CDS STMDT12_C23580 NC_016860.1 2443482 2444684 D COG0282 Acetate kinase; acetate kinase 2443482..2444684 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248055.1 CDS STMDT12_C23590 NC_016860.1 2444761 2446905 D COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 2444761..2446905 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248056.1 CDS STMDT12_C23600 NC_016860.1 2447165 2448643 D COG1288 Predicted membrane protein; hypothetical protein 2447165..2448643 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248057.1 CDS STMDT12_C23610 NC_016860.1 2448692 2449645 R COG3958 Transketolase, C-terminal subunit; putative transketolase complement(2448692..2449645) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248058.1 CDS STMDT12_C23620 NC_016860.1 2449638 2450468 R COG3959 Transketolase, N-terminal subunit; transketolase domain-containing protein complement(2449638..2450468) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248059.1 CDS ulaA1 NC_016860.1 2450465 2451856 R COG3037 Uncharacterized protein conserved in bacteria; ascorbate-specific PTS system IIC protein complement(2450465..2451856) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248060.1 CDS STMDT12_C23640 NC_016860.1 2451877 2452149 R COG3414 Phosphotransferase system, galactitol-specific IIB component; lactose/cellobiose-specific PTS system IIB protein complement(2451877..2452149) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248061.1 CDS STMDT12_C23650 NC_016860.1 2452230 2452673 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); hypothetical protein complement(2452230..2452673) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248062.1 CDS STMDT12_C23660 NC_016860.1 2452672 2452845 D hypothetical protein 2452672..2452845 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248063.1 CDS STMDT12_C23670 NC_016860.1 2452926 2453945 D COG1609 Transcriptional regulators; regulatory protein LacI 2452926..2453945 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248064.1 CDS STMDT12_C23680 NC_016860.1 2453951 2454505 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nudix hydrolase 3 complement(2453951..2454505) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248065.1 CDS STMDT12_C23690 NC_016860.1 2454562 2455113 R COG0622 Predicted phosphoesterase; phosphodiesterase complement(2454562..2455113) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248066.1 CDS STMDT12_C23700 NC_016860.1 2455169 2455813 R COG0625 Glutathione S-transferase; putative glutathione S-transferase complement(2455169..2455813) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248067.1 CDS STMDT12_C23710 NC_016860.1 2455956 2456603 D COG0625 Glutathione S-transferase; putative glutathione S-transferase 2455956..2456603 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248068.1 CDS STMDT12_C23720 NC_016860.1 2456729 2457622 D COG1090 Predicted nucleoside-diphosphate sugar epimerase; hypothetical protein 2456729..2457622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248069.1 CDS STMDT12_C23730 NC_016860.1 2457674 2458447 R COG4598 ABC-type histidine transport system, ATPase component; histidine/lysine/arginine/ornithine ABC transporter substrate binding protein complement(2457674..2458447) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248070.1 CDS STMDT12_C23740 NC_016860.1 2458461 2459168 R COG4160 ABC-type arginine/histidine transport system, permease component; histidine ABC transporter permease protein HisM complement(2458461..2459168) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248071.1 CDS STMDT12_C23750 NC_016860.1 2459165 2459851 R COG4215 ABC-type arginine transport system, permease component; histidine ABC transporter permease protein complement(2459165..2459851) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248072.1 CDS STMDT12_C23760 NC_016860.1 2460034 2460816 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; histidine ABC transporter ATP-binding protein complement(2460034..2460816) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248073.1 CDS STMDT12_C23770 NC_016860.1 2461054 2461836 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; lysine/arginine/ornithine ABC transporter substrate binding protein complement(2461054..2461836) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248074.1 CDS STMDT12_C23780 NC_016860.1 2462125 2462694 R COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2462125..2462694) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248075.1 CDS STMDT12_C23790 NC_016860.1 2462721 2464127 R COG0833 Amino acid transporters; putative amino acid transporter complement(2462721..2464127) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248076.1 CDS STMDT12_C23800 NC_016860.1 2464191 2465294 R COG3457 Predicted amino acid racemase; hypothetical protein complement(2464191..2465294) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248077.1 CDS STMDT12_C23810 NC_016860.1 2465296 2466717 R COG0531 Amino acid transporters; putative amino acid transporter complement(2465296..2466717) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248078.1 CDS STMDT12_C23820 NC_016860.1 2466808 2468205 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(2466808..2468205) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248079.1 CDS STMDT12_C23830 NC_016860.1 2468416 2469843 D COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; putative transcriptional regulator 2468416..2469843 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248080.1 CDS STMDT12_C23840 NC_016860.1 2469879 2471396 R COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; amidophosphoribosyltransferase complement(2469879..2471396) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248081.1 CDS STMDT12_C23850 NC_016860.1 2471434 2471922 R COG1286 Uncharacterized membrane protein, required for colicin V production; colicin V production protein complement(2471434..2471922) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248082.1 CDS STMDT12_C23860 NC_016860.1 2472233 2472907 R COG3147 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2472233..2472907) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248083.1 CDS STMDT12_C23870 NC_016860.1 2472897 2474165 R COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2472897..2474165) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248084.1 CDS STMDT12_C23880 NC_016860.1 2474233 2475147 R COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta complement(2474233..2475147) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248085.1 CDS STMDT12_C23890 NC_016860.1 2475297 2475956 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(2475297..2475956) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248086.1 CDS truA NC_016860.1 2476005 2476817 R COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A complement(2476005..2476817) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248087.1 CDS STMDT12_C23910 NC_016860.1 2476817 2477830 R COG0136 Aspartate-semialdehyde dehydrogenase; putative semialdehyde dehydrogenase complement(2476817..2477830) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248088.1 CDS STMDT12_C23920 NC_016860.1 2477898 2479034 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; erythronate-4-phosphate dehydrogenase complement(2477898..2479034) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248089.1 CDS flk NC_016860.1 2479138 2480139 D flagellar biosynthesis regulator 2479138..2480139 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248090.1 CDS STMDT12_C23940 NC_016860.1 2480136 2481314 R COG0477 Permeases of the major facilitator superfamily; hypothetical protein complement(2480136..2481314) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248091.1 CDS STMDT12_C23950 NC_016860.1 2481494 2481868 R putative bacteriophage protein complement(2481494..2481868) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248092.1 CDS STMDT12_C23960 NC_016860.1 2482041 2482289 D COG3423 Predicted transcriptional regulator; putative regulatory protein 2482041..2482289 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248093.1 CDS STMDT12_C23970 NC_016860.1 2482458 2482826 D putative cytoplasmic protein 2482458..2482826 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248094.1 CDS STMDT12_C23980 NC_016860.1 2482826 2483344 D putative lipoprotein 2482826..2483344 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248095.1 CDS STMDT12_C23990 NC_016860.1 2483411 2484067 R COG1266 Predicted metal-dependent membrane protease; putative inner membrane protein complement(2483411..2484067) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248096.1 CDS fabB NC_016860.1 2484165 2485379 R COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-ACP synthase complement(2484165..2485379) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248097.1 CDS mnmC NC_016860.1 2485539 2487539 D COG4121 Uncharacterized conserved protein; 5-methylaminomethyl-2-thiouridine methyltransferase 2485539..2487539 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248098.1 CDS STMDT12_C24020 NC_016860.1 2487591 2487866 R hypothetical protein complement(2487591..2487866) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248099.1 CDS STMDT12_C24030 NC_016860.1 2487899 2488447 R COG3101 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2487899..2488447) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248100.1 CDS STMDT12_C24040 NC_016860.1 2488447 2489256 R COG0730 Predicted permeases; hypothetical protein complement(2488447..2489256) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248101.1 CDS mepA NC_016860.1 2489256 2490080 R COG3770 Murein endopeptidase; penicillin-insensitive murein endopeptidase complement(2489256..2490080) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248102.1 CDS STMDT12_C24060 NC_016860.1 2490084 2491169 R COG0082 Chorismate synthase; chorismate synthase complement(2490084..2491169) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248103.1 CDS STMDT12_C24070 NC_016860.1 2491205 2492137 R COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2491205..2492137) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248104.1 CDS STMDT12_C24080 NC_016860.1 2492303 2492854 D COG2840 Uncharacterized protein conserved in bacteria; hypothetical protein 2492303..2492854 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248105.1 CDS STMDT12_C24090 NC_016860.1 2492954 2493439 R COG2062 Phosphohistidine phosphatase SixA; phosphohistidine phosphatase complement(2492954..2493439) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248106.1 CDS fadJ NC_016860.1 2493648 2495795 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(2493648..2495795) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248107.1 CDS fadI NC_016860.1 2495795 2497105 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(2495795..2497105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248108.1 CDS STMDT12_C24120 NC_016860.1 2497283 2497567 R COG3691 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2497283..2497567) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248109.1 CDS STMDT12_C24130 NC_016860.1 2497938 2499245 D COG2067 Long-chain fatty acid transport protein; long-chain fatty acid outer membrane transporter 2497938..2499245 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248110.1 CDS vacJ NC_016860.1 2499306 2500061 R COG2853 Surface lipoprotein; lipoprotein VacJ complement(2499306..2500061) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248111.1 CDS STMDT12_C24150 NC_016860.1 2500350 2501291 D COG2116 Formate/nitrite family of transporters; hypothetical protein 2500350..2501291 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248112.1 CDS STMDT12_C24160 NC_016860.1 2501598 2502536 R COG4571 Outer membrane protease; outer membrane protease complement(2501598..2502536) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248113.1 CDS STMDT12_C24170 NC_016860.1 2502804 2504051 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; phosphoglycerate transport system transcriptional regulator pgtA complement(2502804..2504051) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248114.1 CDS STMDT12_C24180 NC_016860.1 2504041 2506047 R COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system; phosphoglycerate transport system sensor protein PgtB complement(2504041..2506047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248115.1 CDS STMDT12_C24190 NC_016860.1 2506044 2507237 R COG1840 ABC-type Fe3+ transport system, periplasmic component; phosphoglycerate transport regulatory protein PgtC precursor complement(2506044..2507237) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248116.1 CDS STMDT12_C24200 NC_016860.1 2507125 2507337 D hypothetical protein 2507125..2507337 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248117.1 CDS STMDT12_C24210 NC_016860.1 2507673 2509064 D COG2271 Sugar phosphate permease; phosphoglycerate transporter 2507673..2509064 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248118.1 CDS STMDT12_C24220 NC_016860.1 2509340 2509582 R hypothetical protein complement(2509340..2509582) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248119.1 CDS STMDT12_C24230 NC_016860.1 2509743 2509856 R hypothetical protein complement(2509743..2509856) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248120.1 CDS STMDT12_C24240 NC_016860.1 2510104 2511024 D COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis palmitoleoyl acyltransferase 2510104..2511024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248121.1 CDS STMDT12_C24250 NC_016860.1 2511548 2512786 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase complement(2511548..2512786) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248122.1 CDS glk NC_016860.1 2513507 2514472 R COG0837 Glucokinase; glucokinase complement(2513507..2514472) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248123.1 CDS STMDT12_C24270 NC_016860.1 2514676 2515911 D hypothetical protein 2514676..2515911 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248124.1 CDS STMDT12_C24280 NC_016860.1 2515931 2517583 R COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes; indolepyruvate decarboxylase complement(2515931..2517583) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248125.1 CDS STMDT12_C24290 NC_016860.1 2517763 2518761 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative ion-channel protein 2517763..2518761 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248126.1 CDS STMDT12_C24300 NC_016860.1 2518875 2519201 D hypothetical protein 2518875..2519201 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248127.1 CDS STMDT12_C24310 NC_016860.1 2519262 2520440 R COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein MntH complement(2519262..2520440) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248128.1 CDS STMDT12_C24320 NC_016860.1 2520846 2522048 D COG1972 Nucleoside permease; nucleoside transporter NupC 2520846..2522048 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248129.1 CDS STMDT12_C24330 NC_016860.1 2522101 2524290 R COG2199 FOG: GGDEF domain; hypothetical protein complement(2522101..2524290) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248130.1 CDS STMDT12_C24340 NC_016860.1 2524778 2525140 D hypothetical protein 2524778..2525140 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248131.1 CDS STMDT12_C24350 NC_016860.1 2525142 2525534 D putative nucleic acid-binding transcriptional regulator 2525142..2525534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248132.1 CDS gltX NC_016860.1 2525588 2527003 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase complement(2525588..2527003) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248133.1 CDS STMDT12_C24370 NC_016860.1 2527819 2528703 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator XapR complement(2527819..2528703) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248134.1 CDS STMDT12_C24380 NC_016860.1 2528755 2528913 R putative XapX domain protein complement(2528755..2528913) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248135.1 CDS STMDT12_C24390 NC_016860.1 2528972 2530228 R COG0477 Permeases of the major facilitator superfamily; xanthosine permease complement(2528972..2530228) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248136.1 CDS STMDT12_C24400 NC_016860.1 2530283 2531116 R COG0005 Purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(2530283..2531116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248137.1 CDS STMDT12_C24410 NC_016860.1 2531372 2532133 D hypothetical protein 2531372..2532133 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248138.1 CDS STMDT12_C24420 NC_016860.1 2532195 2533121 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2532195..2533121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248139.1 CDS STMDT12_C24430 NC_016860.1 2533211 2534209 D COG0385 Predicted Na+-dependent transporter; hypothetical protein 2533211..2534209 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248140.1 CDS STMDT12_C24440 NC_016860.1 2534206 2534424 R COG3530 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2534206..2534424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248141.1 CDS ligA NC_016860.1 2534426 2536441 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA complement(2534426..2536441) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248142.1 CDS STMDT12_C24460 NC_016860.1 2536513 2537499 R COG3115 Cell division protein; cell division protein ZipA complement(2536513..2537499) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248143.1 CDS STMDT12_C24470 NC_016860.1 2537731 2538492 D COG2981 Uncharacterized protein involved in cysteine biosynthesis; putative sulfate transporter CysZ 2537731..2538492 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248144.1 CDS STMDT12_C24480 NC_016860.1 2538656 2539627 D COG0031 Cysteine synthase; cysteine synthase A 2538656..2539627 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248145.1 CDS STMDT12_C24490 NC_016860.1 2539746 2539871 R hypothetical protein complement(2539746..2539871) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248146.1 CDS ptsH NC_016860.1 2540011 2540268 D COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein PtsH 2540011..2540268 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248147.1 CDS STMDT12_C24510 NC_016860.1 2540317 2542044 D COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); PTS system EI protein 2540317..2542044 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248148.1 CDS STMDT12_C24520 NC_016860.1 2542085 2542594 D COG2190 Phosphotransferase system IIA components; glucose-specific PTS system protein 2542085..2542594 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248149.1 CDS STMDT12_C24530 NC_016860.1 2542743 2542982 R hypothetical protein complement(2542743..2542982) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248150.1 CDS pdxK NC_016860.1 2542979 2543845 R COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal kinase complement(2542979..2543845) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248151.1 CDS STMDT12_C24550 NC_016860.1 2543928 2545220 D COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; GntR family transcriptional regulator 2543928..2545220 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248152.1 CDS STMDT12_C24560 NC_016860.1 2545235 2545954 D COG0518 GMP synthase - Glutamine amidotransferase domain; glutamine amidotransferase 2545235..2545954 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248153.1 CDS STMDT12_C24570 NC_016860.1 2546013 2546393 D hypothetical protein 2546013..2546393 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248154.1 CDS STMDT12_C24580 NC_016860.1 2546406 2546945 D COG0744 Membrane carboxypeptidase (penicillin-binding protein); putative membrane carboxypeptidase 2546406..2546945 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248155.1 CDS cysM NC_016860.1 2547076 2547987 R COG0031 Cysteine synthase; cysteine synthase B complement(2547076..2547987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248156.1 CDS STMDT12_C24600 NC_016860.1 2548055 2549152 R COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; sulfate/thiosulfate ABC transporter ATP-binding protein complement(2548055..2549152) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248157.1 CDS cysW NC_016860.1 2549142 2550017 R COG4208 ABC-type sulfate transport system, permease component; sulfate/thiosulfate ABC transporter permease protein complement(2549142..2550017) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248158.1 CDS STMDT12_C24620 NC_016860.1 2550017 2550850 R COG0555 ABC-type sulfate transport system, permease component; sulfate/thiosulfate ABC transporter permease protein complement(2550017..2550850) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248159.1 CDS STMDT12_C24630 NC_016860.1 2550850 2551866 R COG4150 ABC-type sulfate transport system, periplasmic component; thiosulfate ABC transporter substrate binding protein complement(2550850..2551866) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248160.1 CDS STMDT12_C24640 NC_016860.1 2552024 2552815 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase complement(2552024..2552815) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248161.1 CDS STMDT12_C24650 NC_016860.1 2553053 2553952 R COG2837 Predicted iron-dependent peroxidase; dyp-type peroxidase family protein complement(2553053..2553952) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248162.1 CDS STMDT12_C24660 NC_016860.1 2554047 2554622 R hypothetical protein complement(2554047..2554622) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248163.1 CDS STMDT12_C24670 NC_016860.1 2554684 2555133 R putative inner membrane protein complement(2554684..2555133) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248164.1 CDS STMDT12_C24680 NC_016860.1 2555120 2555545 R COG0456 Acetyltransferases; putative acetyltransferase complement(2555120..2555545) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248165.1 CDS STMDT12_C24690 NC_016860.1 2555758 2556627 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase I 2555758..2556627 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248166.1 CDS STMDT12_C24700 NC_016860.1 2556630 2557529 D COG0408 Coproporphyrinogen III oxidase; coproporphyrinogen III oxidase 2556630..2557529 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248167.1 CDS STMDT12_C24710 NC_016860.1 2557550 2557879 D putative inner membrane protein 2557550..2557879 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248168.1 CDS STMDT12_C24720 NC_016860.1 2558092 2559285 D putative cytoplasmic protein 2558092..2559285 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248169.1 CDS STMDT12_C24730 NC_016860.1 2559485 2560537 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator EutR complement(2559485..2560537) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248170.1 CDS STMDT12_C24740 NC_016860.1 2560585 2561079 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; putative ethanolamine utilization protein EutK complement(2560585..2561079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248171.1 CDS STMDT12_C24750 NC_016860.1 2561092 2561751 R COG4816 Ethanolamine utilization protein; ethanolamine utilization protein EutL complement(2561092..2561751) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248172.1 CDS STMDT12_C24760 NC_016860.1 2561761 2562657 R COG4302 Ethanolamine ammonia-lyase, small subunit; ethanolamine ammonia-lyase small subunit complement(2561761..2562657) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248173.1 CDS STMDT12_C24770 NC_016860.1 2562676 2564037 R COG4303 Ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia-lyase large subunit complement(2562676..2564037) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248174.1 CDS eutA NC_016860.1 2564049 2565452 R COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; ethanolamine ammonia lyase reactivating factor complement(2564049..2565452) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248175.1 CDS STMDT12_C24790 NC_016860.1 2565449 2566675 R COG3192 Ethanolamine utilization protein; ethanolamine utilization protein EutH complement(2565449..2566675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248176.1 CDS STMDT12_C24800 NC_016860.1 2566795 2567982 R COG1454 Alcohol dehydrogenase, class IV; putative transport protein complement(2566795..2567982) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248177.1 CDS STMDT12_C24810 NC_016860.1 2567972 2568811 R COG4820 Ethanolamine utilization protein, possible chaperonin; ethanolamine utilization protein EutJ complement(2567972..2568811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248178.1 CDS STMDT12_C24820 NC_016860.1 2568822 2570225 R COG1012 NAD-dependent aldehyde dehydrogenases; putative aldehyde dehydrogenase complement(2568822..2570225) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248179.1 CDS STMDT12_C24830 NC_016860.1 2570237 2570524 R COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; putative ethanolamine utilization protein EutN complement(2570237..2570524) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248180.1 CDS STMDT12_C24840 NC_016860.1 2570637 2570927 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; ethanolamine utilization protein EutM complement(2570637..2570927) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248181.1 CDS eutD NC_016860.1 2570968 2571984 R COG0280 Phosphotransacetylase; phosphotransacetylase complement(2570968..2571984) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248182.1 CDS STMDT12_C24860 NC_016860.1 2571981 2572784 R COG4812 Ethanolamine utilization cobalamin adenosyltransferase; ethanolamine utilization cobalamin adenosyltransferase complement(2571981..2572784) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248183.1 CDS STMDT12_C24870 NC_016860.1 2572781 2573470 R COG4766 Ethanolamine utilization protein; ethanolamine utilization protein EutQ complement(2572781..2573470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248184.1 CDS STMDT12_C24880 NC_016860.1 2573448 2573927 R COG4917 Ethanolamine utilization protein; ethanolamine utilization protein EutP complement(2573448..2573927) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248185.1 CDS STMDT12_C24890 NC_016860.1 2573940 2574275 R COG4810 Ethanolamine utilization protein; ethanolamine utilization protein EutS complement(2573940..2574275) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248186.1 CDS STMDT12_C24900 NC_016860.1 2574756 2575214 R COG1943 Transposase and inactivated derivatives; IS200 transposase complement(2574756..2575214) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248187.1 CDS STMDT12_C24910 NC_016860.1 2575404 2577683 R COG0281 Malic enzyme; malic enzyme complement(2575404..2577683) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248188.1 CDS STMDT12_C24920 NC_016860.1 2577955 2578905 D COG0176 Transaldolase; transaldolase A 2577955..2578905 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248189.1 CDS STMDT12_C24930 NC_016860.1 2578925 2580925 D COG0021 Transketolase; transketolase 2578925..2580925 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248190.1 CDS STMDT12_C24940 NC_016860.1 2580988 2581218 R hypothetical protein complement(2580988..2581218) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248191.1 CDS STMDT12_C24950 NC_016860.1 2581346 2582389 R hypothetical protein complement(2581346..2582389) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248192.1 CDS STMDT12_C24960 NC_016860.1 2582514 2583089 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; putative hydrolase YffH complement(2582514..2583089) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248193.1 CDS STMDT12_C24970 NC_016860.1 2583293 2584591 D COG1680 Beta-lactamase class C and other penicillin binding proteins; hypothetical protein 2583293..2584591 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248194.1 CDS STMDT12_C24980 NC_016860.1 2585040 2587001 R COG1142 Fe-S-cluster-containing hydrogenase components 2; putative oxidoreductase Fe-S binding subunit complement(2585040..2587001) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248195.1 CDS STMDT12_C24990 NC_016860.1 2587187 2588887 D COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarQ 2587187..2588887 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248196.1 CDS STMDT12_C25000 NC_016860.1 2589072 2592185 D COG0841 Cation/multidrug efflux pump; aminoglycoside/multidrug efflux system 2589072..2592185 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248197.1 CDS STMDT12_C25010 NC_016860.1 2592759 2593115 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; hypothetical protein 2592759..2593115 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248198.1 CDS STMDT12_C25020 NC_016860.1 2593119 2594246 D COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 2593119..2594246 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248199.1 CDS STMDT12_C25030 NC_016860.1 2594274 2594474 D hypothetical protein 2594274..2594474 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248200.1 CDS STMDT12_C25040 NC_016860.1 2594501 2596519 R COG1444 Predicted P-loop ATPase fused to an acetyltransferase; putative acetyltransferase complement(2594501..2596519) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248201.1 CDS STMDT12_C25050 NC_016860.1 2596535 2597398 R COG2321 Predicted metalloprotease; hypothetical protein complement(2596535..2597398) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248202.1 CDS STMDT12_C25060 NC_016860.1 2597529 2598242 R COG0152 Phosphoribosylaminoimidazolesuccinocarboxam ide (SAICAR) synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2597529..2598242) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248203.1 CDS STMDT12_C25070 NC_016860.1 2598417 2599451 R COG3317 Uncharacterized lipoprotein; lipoprotein complement(2598417..2599451) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248204.1 CDS STMDT12_C25080 NC_016860.1 2599468 2600346 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(2599468..2600346) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248205.1 CDS gcvR NC_016860.1 2600492 2601064 D COG2716 Glycine cleavage system regulatory protein; glycine cleavage system transcriptional repressor 2600492..2601064 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248206.1 CDS bcp NC_016860.1 2601064 2601534 D COG1225 Peroxiredoxin; thioredoxin-dependent thiol peroxidase 2601064..2601534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248207.1 CDS STMDT12_C25110 NC_016860.1 2601581 2601934 R COG1929 Glycerate kinase; glycerate kinase complement(2601581..2601934) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248208.1 CDS STMDT12_C25120 NC_016860.1 2602121 2603188 R COG0628 Predicted permease; permease PerM complement(2602121..2603188) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248209.1 CDS STMDT12_C25130 NC_016860.1 2603395 2604858 D COG4783 Putative Zn-dependent protease, contains TPR repeats; hypothetical protein 2603395..2604858 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248210.1 CDS STMDT12_C25140 NC_016860.1 2604898 2605257 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; putative oxidoreductase 2604898..2605257 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248211.1 CDS STMDT12_C25150 NC_016860.1 2605284 2606009 R COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor complement(2605284..2606009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248212.1 CDS STMDT12_C25160 NC_016860.1 2606080 2607369 R COG2233 Xanthine/uracil permeases; uracil transporter complement(2606080..2607369) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248213.1 CDS upp NC_016860.1 2607457 2608083 R COG0035 Uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(2607457..2608083) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248214.1 CDS STMDT12_C25180 NC_016860.1 2608497 2609534 D COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; phosphoribosylaminoimidazole synthetase 2608497..2609534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248215.1 CDS purN NC_016860.1 2609534 2610172 D COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 2609534..2610172 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248216.1 CDS STMDT12_C25200 NC_016860.1 2610361 2612427 D COG0855 Polyphosphate kinase; polyphosphate kinase 2610361..2612427 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248217.1 CDS STMDT12_C25210 NC_016860.1 2612432 2613973 D COG0248 Exopolyphosphatase; exopolyphosphatase 2612432..2613973 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248218.1 CDS STMDT12_C25220 NC_016860.1 2614009 2616222 R COG2199 FOG: GGDEF domain; inner membrane protein YfgF complement(2614009..2616222) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248219.1 CDS STMDT12_C25230 NC_016860.1 2616635 2616826 D putative inner membrane protein 2616635..2616826 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248220.1 CDS STMDT12_C25240 NC_016860.1 2617191 2617382 D putative cytoplasmic protein 2617191..2617382 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248221.1 CDS STMDT12_C25250 NC_016860.1 2617382 2617696 D putative cytoplasmic protein 2617382..2617696 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248222.1 CDS STMDT12_C25260 NC_016860.1 2617716 2618072 R COG2801 Transposase and inactivated derivatives; putative transposase complement(2617716..2618072) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248223.1 CDS guaA NC_016860.1 2618229 2619806 R COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase complement(2618229..2619806) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248224.1 CDS STMDT12_C25280 NC_016860.1 2619876 2621342 R COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase complement(2619876..2621342) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248225.1 CDS xseA NC_016860.1 2621503 2622852 D COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 2621503..2622852 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248226.1 CDS STMDT12_C25300 NC_016860.1 2623014 2629124 R COG1404 Subtilisin-like serine proteases; AIDA autotransporter-like protein complement(2623014..2629124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248227.1 CDS STMDT12_C25310 NC_016860.1 2629726 2629839 R hypothetical protein complement(2629726..2629839) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248228.1 CDS STMDT12_C25320 NC_016860.1 2629827 2637134 R putative outer membrane protein complement(2629827..2637134) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248229.1 CDS STMDT12_C25330 NC_016860.1 2637300 2642879 R putative outer membrane protein complement(2637300..2642879) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248230.1 CDS STMDT12_C25340 NC_016860.1 2643017 2643976 R putative outer membrane protein complement(2643017..2643976) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248231.1 CDS STMDT12_C25350 NC_016860.1 2644034 2646226 R Aec1 complement(2644034..2646226) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248232.1 CDS STMDT12_C25360 NC_016860.1 2646572 2646793 R hypothetical protein complement(2646572..2646793) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248233.1 CDS engA NC_016860.1 2646882 2648354 R COG1160 Predicted GTPases; GTP-binding protein EngA complement(2646882..2648354) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248234.1 CDS STMDT12_C25380 NC_016860.1 2648473 2649651 R COG1520 FOG: WD40-like repeat; outer membrane protein assembly complex subunit YfgL complement(2648473..2649651) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248235.1 CDS STMDT12_C25390 NC_016860.1 2649662 2650282 R COG2976 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2649662..2650282) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248236.1 CDS hisS NC_016860.1 2650296 2651570 R COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(2650296..2651570) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248237.1 CDS ispG NC_016860.1 2651681 2652799 R COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2651681..2652799) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248238.1 CDS STMDT12_C25420 NC_016860.1 2652826 2653830 R COG1426 Uncharacterized protein conserved in bacteria; cytoskeletal protein RodZ complement(2652826..2653830) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248239.1 CDS STMDT12_C25430 NC_016860.1 2654122 2655288 R COG0820 Predicted Fe-S-cluster redox enzyme; 23S rRNA methyltransferase N complement(2654122..2655288) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248240.1 CDS ndk NC_016860.1 2655495 2655926 R COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase complement(2655495..2655926) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248241.1 CDS STMDT12_C25450 NC_016860.1 2656047 2656910 R COG1145 Ferredoxin; putative polyferredoxin complement(2656047..2656910) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248242.1 CDS STMDT12_C25460 NC_016860.1 2656910 2657719 R COG3302 DMSO reductase anchor subunit; putative anaerobic reductase component complement(2656910..2657719) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248243.1 CDS STMDT12_C25470 NC_016860.1 2657712 2658341 R COG0437 Fe-S-cluster-containing hydrogenase components 1; putative anaerobic dimethylsulfoxide reductase complement(2657712..2658341) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248244.1 CDS STMDT12_C25480 NC_016860.1 2658338 2660716 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative anaerobic dimethylsulfoxide reductase complement(2658338..2660716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248245.1 CDS STMDT12_C25490 NC_016860.1 2660872 2663187 R COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C complement(2660872..2663187) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248246.1 CDS STMDT12_C25500 NC_016860.1 2663188 2668122 R COG2373 Large extracellular alpha-helical protein; putative inner membrane lipoprotein complement(2663188..2668122) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248247.1 CDS sseA NC_016860.1 2668331 2669173 D COG2897 Rhodanese-related sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 2668331..2669173 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248248.1 CDS STMDT12_C25520 NC_016860.1 2669310 2669432 R hypothetical protein complement(2669310..2669432) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248249.1 CDS STMDT12_C25530 NC_016860.1 2669420 2670088 D putative cytoplasmic protein 2669420..2670088 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248250.1 CDS STMDT12_C25540 NC_016860.1 2670143 2670271 R hypothetical protein complement(2670143..2670271) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248251.1 CDS STMDT12_C25550 NC_016860.1 2670657 2671433 R enhanced serine sensitivity protein SseB complement(2670657..2671433) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248252.1 CDS STMDT12_C25560 NC_016860.1 2671543 2672826 R COG0260 Leucyl aminopeptidase; aminopeptidase B complement(2671543..2672826) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248253.1 CDS STMDT12_C25570 NC_016860.1 2673073 2673273 R COG2975 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2673073..2673273) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248254.1 CDS STMDT12_C25580 NC_016860.1 2673285 2673620 R COG0633 Ferredoxin; 2Fe-2S ferredoxin complement(2673285..2673620) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248255.1 CDS hscA NC_016860.1 2673622 2675472 R COG0443 Molecular chaperone; chaperone protein HscA complement(2673622..2675472) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248256.1 CDS hscB NC_016860.1 2675485 2676000 R COG1076 DnaJ-domain-containing proteins 1; co-chaperone HscB complement(2675485..2676000) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248257.1 CDS iscA NC_016860.1 2676196 2676519 R COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly protein complement(2676196..2676519) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248258.1 CDS STMDT12_C25620 NC_016860.1 2676548 2676934 R COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein complement(2676548..2676934) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248259.1 CDS STMDT12_C25630 NC_016860.1 2676962 2678176 R COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase complement(2676962..2678176) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248260.1 CDS STMDT12_C25640 NC_016860.1 2678357 2678851 R COG1959 Predicted transcriptional regulator; DNA-binding transcriptional regulator IscR complement(2678357..2678851) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248261.1 CDS STMDT12_C25650 NC_016860.1 2679011 2679742 R COG0565 rRNA methylase; RNA methyltransferase complement(2679011..2679742) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248262.1 CDS STMDT12_C25660 NC_016860.1 2679861 2680664 D COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 2679861..2680664 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248263.1 CDS STMDT12_C25670 NC_016860.1 2680809 2681687 D COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 2680809..2681687 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248264.1 CDS STMDT12_C25680 NC_016860.1 2681869 2682912 D COG1145 Ferredoxin; anaerobic sulfite reductase subunit A 2681869..2682912 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248265.1 CDS STMDT12_C25690 NC_016860.1 2682916 2683734 D COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; anaerobic sulfite reductase subunit B 2682916..2683734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248266.1 CDS STMDT12_C25700 NC_016860.1 2683745 2684758 D COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits; anaerobic sulfite reductase subunit C 2683745..2684758 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248267.1 CDS STMDT12_C25710 NC_016860.1 2684759 2685745 R COG2215 ABC-type uncharacterized transport system, permease component; high-affinity nickel-transporter complement(2684759..2685745) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248268.1 CDS STMDT12_C25720 NC_016860.1 2685736 2686404 R COG3683 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein complement(2685736..2686404) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248269.1 CDS STMDT12_C25730 NC_016860.1 2686500 2687777 D COG3711 Transcriptional antiterminator; stationary phase inducible protein CsiE 2686500..2687777 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248270.1 CDS STMDT12_C25740 NC_016860.1 2687772 2688911 R COG0477 Permeases of the major facilitator superfamily; putative 3-phenylpropionic acid transporter complement(2687772..2688911) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248271.1 CDS glyA NC_016860.1 2689107 2690360 R COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase complement(2689107..2690360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248272.1 CDS STMDT12_C25760 NC_016860.1 2690685 2691875 D COG1017 Hemoglobin-like flavoprotein; nitric oxide dioxygenase 2690685..2691875 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248273.1 CDS STMDT12_C25770 NC_016860.1 2692057 2693601 D COG3710 DNA-binding winged-HTH domains; DNA-binding transcriptional activator CadC 2692057..2693601 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248274.1 CDS cadB NC_016860.1 2693962 2695293 D COG0531 Amino acid transporters; lysine/cadaverine antiporter 2693962..2695293 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248275.1 CDS STMDT12_C25790 NC_016860.1 2695376 2697520 D COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase 1 2695376..2697520 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248276.1 CDS STMDT12_C25800 NC_016860.1 2697576 2699036 D COG3104 Dipeptide/tripeptide permease; inner membrane transport protein YbgH 2697576..2699036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248277.1 CDS STMDT12_C25810 NC_016860.1 2699085 2699423 R COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 1 complement(2699085..2699423) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248278.1 CDS STMDT12_C25820 NC_016860.1 2699500 2700837 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; putative transcriptional regulator complement(2699500..2700837) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248279.1 CDS STMDT12_C25830 NC_016860.1 2700834 2701520 R hypothetical protein complement(2700834..2701520) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248280.1 CDS STMDT12_C25840 NC_016860.1 2701600 2702985 R COG0642 Signal transduction histidine kinase; putative sensor kinase complement(2701600..2702985) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248281.1 CDS STMDT12_C25850 NC_016860.1 2703680 2707567 R COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase complement(2703680..2707567) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248282.1 CDS STMDT12_C25860 NC_016860.1 2707589 2707822 D COG0060 Isoleucyl-tRNA synthetase; hypothetical protein 2707589..2707822 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248283.1 CDS STMDT12_C25870 NC_016860.1 2707823 2709367 D COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; putative transglycosylase 2707823..2709367 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248284.1 CDS STMDT12_C25880 NC_016860.1 2709418 2709936 R COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase complement(2709418..2709936) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248285.1 CDS STMDT12_C25890 NC_016860.1 2709994 2710629 R COG0560 Phosphoserine phosphatase; hypothetical protein complement(2709994..2710629) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248286.1 CDS STMDT12_C25900 NC_016860.1 2710633 2711994 R COG1264 Phosphotransferase system IIB components; putative PTS system IIB protein complement(2710633..2711994) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248287.1 CDS murQ NC_016860.1 2712005 2712898 R COG2103 Predicted sugar phosphate isomerase; N-acetylmuramic acid 6-phosphate etherase complement(2712005..2712898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248288.1 CDS STMDT12_C25920 NC_016860.1 2713014 2713862 D COG1737 Transcriptional regulators; putative DNA-binding transcriptional regulator 2713014..2713862 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248289.1 CDS STMDT12_C25930 NC_016860.1 2713901 2714818 R COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(2713901..2714818) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248290.1 CDS STMDT12_C25940 NC_016860.1 2714840 2716036 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(2714840..2716036) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248291.1 CDS STMDT12_C25950 NC_016860.1 2716152 2717078 D COG0583 Transcriptional regulator; putative transcriptional regulator 2716152..2717078 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248292.1 CDS STMDT12_C25960 NC_016860.1 2717116 2717376 D COG1145 Ferredoxin; putative ferredoxin 2717116..2717376 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248293.1 CDS acpS NC_016860.1 2717488 2717868 R COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase AcpS complement(2717488..2717868) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248294.1 CDS STMDT12_C25980 NC_016860.1 2717868 2718599 R COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase complement(2717868..2718599) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248295.1 CDS recO NC_016860.1 2718611 2719339 R COG1381 Recombinational DNA repair protein (RecF pathway); DNA repair protein RecO complement(2718611..2719339) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248296.1 CDS era NC_016860.1 2719351 2720256 R COG1159 GTPase; GTP-binding protein Era complement(2719351..2720256) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248297.1 CDS rnc NC_016860.1 2720253 2720990 R COG0571 dsRNA-specific ribonuclease; ribonuclease III complement(2720253..2720990) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248298.1 CDS STMDT12_C26020 NC_016860.1 2721207 2722181 R COG0681 Signal peptidase I; signal peptidase I complement(2721207..2722181) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248299.1 CDS STMDT12_C26030 NC_016860.1 2722198 2723997 R COG0481 Membrane GTPase LepA; GTP-binding protein LepA complement(2722198..2723997) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248300.1 CDS STMDT12_C26040 NC_016860.1 2724426 2725895 D hypothetical protein 2724426..2725895 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248302.1 CDS STMDT12_C26060 NC_016860.1 2726099 2726227 R hypothetical protein complement(2726099..2726227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248303.1 CDS STMDT12_C26070 NC_016860.1 2726268 2726375 D hypothetical protein 2726268..2726375 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248304.1 CDS STMDT12_C26080 NC_016860.1 2727230 2727349 R integrase, catalytic region complement(2727230..2727349) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248305.1 CDS STMDT12_C26090 NC_016860.1 2728745 2729323 R phage tail assembly protein complement(2728745..2729323) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248306.1 CDS STMDT12_C26100 NC_016860.1 2729313 2730137 R COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Appr-1-p processing enzyme family protein complement(2729313..2730137) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248307.1 CDS STMDT12_C26110 NC_016860.1 2730134 2732506 R side tail fiber protein complement(2730134..2732506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248308.1 CDS STMDT12_C26120 NC_016860.1 2732560 2732802 R hypothetical protein complement(2732560..2732802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248309.1 CDS STMDT12_C26130 NC_016860.1 2732841 2736203 R COG4733 Phage-related protein, tail component; host specificity protein complement(2732841..2736203) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248310.1 CDS STMDT12_C26140 NC_016860.1 2736265 2736873 R COG4723 Phage-related protein, tail component; tail assembly protein complement(2736265..2736873) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248311.1 CDS STMDT12_C26150 NC_016860.1 2736810 2737547 R COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily; putative phage tail fiber protein K complement(2736810..2737547) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248312.1 CDS STMDT12_C26160 NC_016860.1 2737554 2738252 R COG4672 Phage-related protein; phage minor tail protein L complement(2737554..2738252) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248313.1 CDS STMDT12_C26170 NC_016860.1 2738262 2738591 R COG4718 Phage-related protein; phage minor tail protein complement(2738262..2738591) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248314.1 CDS STMDT12_C26180 NC_016860.1 2738594 2741689 R COG5281 Phage-related minor tail protein; Gifsy-1 prophage VmtH complement(2738594..2741689) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248315.1 CDS STMDT12_C26190 NC_016860.1 2741661 2741975 R minor tail-like protein complement(2741661..2741975) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248316.1 CDS STMDT12_C26200 NC_016860.1 2741996 2742391 R phage minor tail protein G complement(2741996..2742391) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248317.1 CDS STMDT12_C26210 NC_016860.1 2742442 2743185 R COG5492 Bacterial surface proteins containing Ig-like domains; major tail-like protein complement(2742442..2743185) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248318.1 CDS STMDT12_C26220 NC_016860.1 2743196 2743597 R phage minor tail protein U complement(2743196..2743597) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248319.1 CDS STMDT12_C26230 NC_016860.1 2743706 2744836 D COG0675 Transposase and inactivated derivatives; peyer'S patch-specific virulence factor GipA 2743706..2744836 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248320.1 CDS STMDT12_C26240 NC_016860.1 2744885 2745463 R phage minor tail protein Z complement(2744885..2745463) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248321.1 CDS STMDT12_C26250 NC_016860.1 2745491 2745874 R phage Head-Tail Attachment complement(2745491..2745874) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248322.1 CDS STMDT12_C26260 NC_016860.1 2745885 2746244 R Gifsy-1 prophage DNA packaging protein complement(2745885..2746244) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248323.1 CDS STMDT12_C26270 NC_016860.1 2746302 2747330 R phage major capsid protein E complement(2746302..2747330) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248324.1 CDS STMDT12_C26280 NC_016860.1 2747385 2747732 R bacteriophage lambda head decoration protein D complement(2747385..2747732) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248325.1 CDS STMDT12_C26290 NC_016860.1 2747745 2749241 R COG0616 Periplasmic serine proteases (ClpP class); Gifsy-1 prophage head-tail preconnector gp5 complement(2747745..2749241) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248326.1 CDS STMDT12_C26300 NC_016860.1 2749231 2750811 R COG5511 Bacteriophage capsid protein; phage portal protein, lambda family complement(2749231..2750811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248327.1 CDS STMDT12_C26310 NC_016860.1 2750808 2751011 R gpW complement(2750808..2751011) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248328.1 CDS STMDT12_C26320 NC_016860.1 2750995 2752926 R COG5525 Bacteriophage tail assembly protein; phage terminase large subunit complement(2750995..2752926) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248329.1 CDS STMDT12_C26330 NC_016860.1 2752898 2753443 R COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; Gifsy-1 prophage DNA packaging protein complement(2752898..2753443) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248330.1 CDS STMDT12_C26340 NC_016860.1 2753730 2754131 D pre-peptidase C-domain protein 2753730..2754131 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248331.1 CDS STMDT12_C26350 NC_016860.1 2754367 2754840 R endopeptidase-like protein complement(2754367..2754840) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248332.1 CDS STMDT12_C26360 NC_016860.1 2754837 2755286 R COG3772 Phage-related lysozyme (muraminidase); morphogenesis-like protein complement(2754837..2755286) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248333.1 CDS STMDT12_C26370 NC_016860.1 2755273 2755608 R phage holin, lambda family protein complement(2755273..2755608) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248334.1 CDS STMDT12_C26380 NC_016860.1 2755878 2756564 D GogA 2755878..2756564 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248335.1 CDS STMDT12_C26390 NC_016860.1 2756779 2756967 R hypothetical protein complement(2756779..2756967) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248336.1 CDS STMDT12_C26400 NC_016860.1 2757474 2758037 R antirepressor-like protein complement(2757474..2758037) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248337.1 CDS STMDT12_C26410 NC_016860.1 2758310 2758987 R Gifsy-1 prophage RegQ complement(2758310..2758987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248338.1 CDS STMDT12_C26420 NC_016860.1 2758984 2759124 R hypothetical protein complement(2758984..2759124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248339.1 CDS STMDT12_C26430 NC_016860.1 2759121 2759732 R bacteriophage Lambda NinG protein complement(2759121..2759732) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248340.1 CDS STMDT12_C26440 NC_016860.1 2759735 2759941 R hypothetical protein complement(2759735..2759941) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248341.1 CDS STMDT12_C26450 NC_016860.1 2759941 2760543 R hypothetical protein complement(2759941..2760543) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248342.1 CDS STMDT12_C26460 NC_016860.1 2760959 2761192 R COG1344 Flagellin and related hook-associated proteins; hypothetical protein complement(2760959..2761192) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248343.1 CDS STMDT12_C26470 NC_016860.1 2761484 2761753 R hypothetical protein complement(2761484..2761753) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248344.1 CDS STMDT12_C26480 NC_016860.1 2761852 2762163 R hypothetical protein complement(2761852..2762163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248345.1 CDS STMDT12_C26490 NC_016860.1 2762160 2762507 R hypothetical protein complement(2762160..2762507) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248346.1 CDS STMDT12_C26500 NC_016860.1 2762518 2763267 R COG1484 DNA replication protein; putative replication protein complement(2762518..2763267) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248347.1 CDS STMDT12_C26510 NC_016860.1 2763270 2764253 R Gifsy-1 prophage PrpO complement(2763270..2764253) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248348.1 CDS STMDT12_C26520 NC_016860.1 2764338 2764487 R Gifsy-1 prophage cI protein complement(2764338..2764487) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248349.1 CDS STMDT12_C26530 NC_016860.1 2764678 2764917 R hypothetical protein complement(2764678..2764917) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248350.1 CDS STMDT12_C26540 NC_016860.1 2765037 2765447 D COG1396 Predicted transcriptional regulators; regulatory protein 2765037..2765447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248351.1 CDS STMDT12_C26550 NC_016860.1 2765641 2765757 D hypothetical protein 2765641..2765757 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248352.1 CDS STMDT12_C26560 NC_016860.1 2765750 2765908 D hypothetical protein 2765750..2765908 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248353.1 CDS STMDT12_C26570 NC_016860.1 2765930 2766229 D hypothetical protein 2765930..2766229 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248354.1 CDS STMDT12_C26580 NC_016860.1 2766356 2769283 D Gifsy-1 prophage RecE 2766356..2769283 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248355.1 CDS STMDT12_C26590 NC_016860.1 2769294 2770403 D Gifsy-1 prophage protein 2769294..2770403 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248356.1 CDS STMDT12_C26600 NC_016860.1 2770446 2770685 D putative cytoplasmic protein 2770446..2770685 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248357.1 CDS STMDT12_C26610 NC_016860.1 2770988 2772217 R COG0582 Integrase; integrase-like protein complement(2770988..2772217) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248358.1 CDS STMDT12_C26620 NC_016860.1 2772715 2773194 R COG3086 Positive regulator of sigma E activity; SoxR reducing system protein RseC complement(2772715..2773194) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248359.1 CDS rseB NC_016860.1 2773191 2774147 R COG3026 Negative regulator of sigma E activity; periplasmic negative regulator of sigmaE complement(2773191..2774147) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248360.1 CDS STMDT12_C26640 NC_016860.1 2774147 2774797 R COG3073 Negative regulator of sigma E activity; anti-RNA polymerase sigma factor SigE complement(2774147..2774797) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248361.1 CDS STMDT12_C26650 NC_016860.1 2774829 2775404 R COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor RpoE complement(2774829..2775404) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248362.1 CDS STMDT12_C26660 NC_016860.1 2775832 2777451 D COG0029 Aspartate oxidase; L-aspartate oxidase 2775832..2777451 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248363.1 CDS STMDT12_C26670 NC_016860.1 2777436 2778173 R COG4123 Predicted O-methyltransferase; putative transferase complement(2777436..2778173) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248364.1 CDS STMDT12_C26680 NC_016860.1 2778304 2779638 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase SrmB 2778304..2779638 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248365.1 CDS STMDT12_C26690 NC_016860.1 2779656 2780600 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2779656..2780600) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248366.1 CDS STMDT12_C26700 NC_016860.1 2780658 2781245 D COG1280 Putative threonine efflux protein; neutral amino-acid efflux protein 2780658..2781245 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248367.1 CDS STMDT12_C26710 NC_016860.1 2781307 2781690 R COG3445 Acid-induced glycyl radical enzyme; autonomous glycyl radical cofactor GrcA complement(2781307..2781690) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248368.1 CDS STMDT12_C26720 NC_016860.1 2782009 2782698 D COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 2782009..2782698 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248369.1 CDS STMDT12_C26730 NC_016860.1 2782814 2783851 R COG0566 rRNA methylases; putative methyltransferase complement(2782814..2783851) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248370.1 CDS STMDT12_C26740 NC_016860.1 2784055 2784474 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2 2784055..2784474 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248371.1 CDS STMDT12_C26750 NC_016860.1 2784547 2785227 D COG3148 Uncharacterized conserved protein; putative cytoplasmic protein 2784547..2785227 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248372.1 CDS STMDT12_C26760 NC_016860.1 2785281 2787941 D COG1042 Acyl-CoA synthetase (NDP forming); CoA binding domain/acetyltransferase domain-containing protein 2785281..2787941 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248373.1 CDS pssA NC_016860.1 2788056 2789411 D COG1502 Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes; phosphatidylserine synthase 2788056..2789411 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248374.1 CDS STMDT12_C26780 NC_016860.1 2789456 2789779 D COG5544 Predicted periplasmic lipoprotein; hypothetical protein 2789456..2789779 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248375.1 CDS STMDT12_C26790 NC_016860.1 2789776 2791077 R COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate transporter complement(2789776..2791077) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248376.1 CDS STMDT12_C26800 NC_016860.1 2791181 2791636 R hypothetical protein complement(2791181..2791636) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248377.1 CDS STMDT12_C26810 NC_016860.1 2797517 2800090 R COG0542 ATPases with chaperone activity, ATP-binding subunit; protein disaggregation chaperone complement(2797517..2800090) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248378.1 CDS STMDT12_C26820 NC_016860.1 2800220 2800951 R COG1496 Uncharacterized conserved protein; hypothetical protein complement(2800220..2800951) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248379.1 CDS rluD NC_016860.1 2800948 2801928 R COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase D complement(2800948..2801928) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248380.1 CDS STMDT12_C26840 NC_016860.1 2802060 2802797 D COG4105 DNA uptake lipoprotein; outer membrane protein assembly complex subunit YfiO 2802060..2802797 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248381.1 CDS STMDT12_C26850 NC_016860.1 2803069 2803407 D COG1544 Ribosome-associated protein Y (PSrp-1); ribosome-associated inhibitor A 2803069..2803407 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248382.1 CDS STMDT12_C26860 NC_016860.1 2803565 2803951 D hypothetical protein 2803565..2803951 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248383.1 CDS STMDT12_C26870 NC_016860.1 2804985 2806688 R COG3501 Uncharacterized protein conserved in bacteria; phage protein complement(2804985..2806688) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248384.1 CDS STMDT12_C26880 NC_016860.1 2806688 2807233 R phage protein complement(2806688..2807233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248385.1 CDS STMDT12_C26890 NC_016860.1 2807205 2807930 R hypothetical protein complement(2807205..2807930) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248386.1 CDS STMDT12_C26900 NC_016860.1 2807920 2808474 R gp20 complement(2807920..2808474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248387.1 CDS STMDT12_C26910 NC_016860.1 2808487 2808708 R putative frameshift mutation; gp19 complement(2808487..2808708) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248388.1 CDS STMDT12_C26920 NC_016860.1 2808705 2810732 R putative frameshift mutation; gp19 complement(2808705..2810732) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248389.1 CDS STMDT12_C26930 NC_016860.1 2810742 2811329 R phage protein complement(2810742..2811329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248390.1 CDS STMDT12_C26940 NC_016860.1 2811322 2812506 R COG3299 Uncharacterized homolog of phage Mu protein gp47; phage protein complement(2811322..2812506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248391.1 CDS STMDT12_C26950 NC_016860.1 2812503 2812832 R phage protein complement(2812503..2812832) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248392.1 CDS STMDT12_C26960 NC_016860.1 2812829 2814796 R phage tail tape measure protein, TP901 family complement(2812829..2814796) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248393.1 CDS STMDT12_C26970 NC_016860.1 2814793 2814897 R hypothetical protein complement(2814793..2814897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248394.1 CDS STMDT12_C26980 NC_016860.1 2814984 2815241 R phage protein complement(2814984..2815241) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248395.1 CDS STMDT12_C26990 NC_016860.1 2815228 2815461 R hypothetical protein complement(2815228..2815461) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248396.1 CDS STMDT12_C27000 NC_016860.1 2815388 2815720 R hypothetical phage-related protein complement(2815388..2815720) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248397.1 CDS STMDT12_C27010 NC_016860.1 2815720 2816061 R hypothetical phage-related protein complement(2815720..2816061) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248398.1 CDS STMDT12_C27020 NC_016860.1 2816058 2816354 R phage holin family 2 complement(2816058..2816354) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248399.1 CDS STMDT12_C27030 NC_016860.1 2816367 2816822 R phage protein complement(2816367..2816822) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248400.1 CDS STMDT12_C27040 NC_016860.1 2816819 2817946 R tail sheath protein complement(2816819..2817946) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248401.1 CDS STMDT12_C27050 NC_016860.1 2817943 2818647 R phage protein complement(2817943..2818647) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248402.1 CDS STMDT12_C27060 NC_016860.1 2818644 2819126 R hypothetical protein complement(2818644..2819126) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248403.1 CDS STMDT12_C27070 NC_016860.1 2819123 2819575 R phage head completion protein complement(2819123..2819575) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248404.1 CDS STMDT12_C27080 NC_016860.1 2819669 2819860 R hypothetical protein complement(2819669..2819860) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248405.1 CDS STMDT12_C27090 NC_016860.1 2819879 2820580 R phage terminase small subunit complement(2819879..2820580) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248406.1 CDS STMDT12_C27100 NC_016860.1 2820589 2821617 R phage major capsid protein, P2 family complement(2820589..2821617) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248407.1 CDS STMDT12_C27110 NC_016860.1 2821652 2822644 R scaffold protein complement(2821652..2822644) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248408.1 CDS STMDT12_C27120 NC_016860.1 2822702 2824486 D hypothetical protein 2822702..2824486 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248409.1 CDS STMDT12_C27130 NC_016860.1 2824483 2825502 D COG5518 Bacteriophage capsid portal protein; phage portal protein, pbsx family 2824483..2825502 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248410.1 CDS STMDT12_C27140 NC_016860.1 2825556 2825825 D zinc-finger protein 2825556..2825825 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248411.1 CDS STMDT12_C27150 NC_016860.1 2825853 2828510 R COG0358 DNA primase (bacterial type); putative phage-like protein complement(2825853..2828510) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248412.1 CDS STMDT12_C27160 NC_016860.1 2828770 2829339 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; endodeoxyribonuclease complement(2828770..2829339) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248413.1 CDS STMDT12_C27170 NC_016860.1 2829349 2829681 R hypothetical protein complement(2829349..2829681) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248414.1 CDS STMDT12_C27180 NC_016860.1 2829707 2830045 R bacteriophage regulatory protein complement(2829707..2830045) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248415.1 CDS STMDT12_C27190 NC_016860.1 2830154 2830453 D COG1396 Predicted transcriptional regulators; putative repressor protein C 2830154..2830453 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248416.1 CDS STMDT12_C27200 NC_016860.1 2830502 2831512 D COG0582 Integrase; integrase 2830502..2831512 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248417.1 CDS pheA NC_016860.1 2831823 2832983 D COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydratase 2831823..2832983 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248418.1 CDS STMDT12_C27220 NC_016860.1 2832944 2833852 R COG3386 Gluconolactonase; SMP-30/Gluconolaconase/LRE domain-containing protein complement(2832944..2833852) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248419.1 CDS tyrA NC_016860.1 2833910 2835031 R COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydrogenase complement(2833910..2835031) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248420.1 CDS STMDT12_C27240 NC_016860.1 2835041 2836111 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2835041..2836111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248421.1 CDS STMDT12_C27250 NC_016860.1 2836551 2837069 D hypothetical protein 2836551..2837069 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248422.1 CDS STMDT12_C27260 NC_016860.1 2837062 2838282 D COG2199 FOG: GGDEF domain; hypothetical protein 2837062..2838282 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248423.1 CDS rplS NC_016860.1 2838439 2838786 R COG0335 Ribosomal protein L19; 50S ribosomal protein L19 complement(2838439..2838786) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248424.1 CDS trmD NC_016860.1 2838827 2839594 R COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N1) methyltransferase complement(2838827..2839594) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248425.1 CDS rimM NC_016860.1 2839639 2840187 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(2839639..2840187) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248426.1 CDS rpsP NC_016860.1 2840206 2840454 R COG0228 Ribosomal protein S16; 30S ribosomal protein S16 complement(2840206..2840454) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248427.1 CDS STMDT12_C27310 NC_016860.1 2840768 2842129 R COG0541 Signal recognition particle GTPase; signal recognition particle protein complement(2840768..2842129) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248428.1 CDS STMDT12_C27320 NC_016860.1 2842295 2843086 D COG4137 ABC-type uncharacterized transport system, permease component; hypothetical protein 2842295..2843086 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248429.1 CDS STMDT12_C27330 NC_016860.1 2843196 2844392 D COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 2843196..2844392 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248430.1 CDS STMDT12_C27340 NC_016860.1 2844513 2845118 D putative cytoplasmic protein 2844513..2845118 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248431.1 CDS STMDT12_C27350 NC_016860.1 2845153 2845743 R COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE complement(2845153..2845743) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248432.1 CDS ppnK NC_016860.1 2845866 2846744 D COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 2845866..2846744 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248433.1 CDS STMDT12_C27370 NC_016860.1 2846830 2848491 D COG0497 ATPase involved in DNA repair; recombination and repair protein 2846830..2848491 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248434.1 CDS STMDT12_C27380 NC_016860.1 2848640 2848978 D COG2913 Small protein A (tmRNA-binding); hypothetical protein 2848640..2848978 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248435.1 CDS STMDT12_C27390 NC_016860.1 2849144 2849434 R COG2914 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2849144..2849434) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248436.1 CDS STMDT12_C27400 NC_016860.1 2849424 2849861 R COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein complement(2849424..2849861) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248437.1 CDS smpB NC_016860.1 2850005 2850532 D COG0691 tmRNA-binding protein; SsrA-binding protein 2850005..2850532 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248438.1 CDS STMDT12_C27420 NC_016860.1 2851146 2862620 D hypothetical protein 2851146..2862620 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248439.1 CDS STMDT12_C27430 NC_016860.1 2862685 2864094 D COG1538 Outer membrane protein; TolC family type I secretion outer membrane protein 2862685..2864094 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248440.1 CDS STMDT12_C27440 NC_016860.1 2864091 2866271 D COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; putative ABC transporter permease/ATP-binding protein 2864091..2866271 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248441.1 CDS STMDT12_C27450 NC_016860.1 2866252 2867442 D COG0845 Membrane-fusion protein; HlyD family type I secretion membrane fusion protein 2866252..2867442 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248442.1 CDS STMDT12_C27460 NC_016860.1 2867994 2868212 R late control-like protein complement(2867994..2868212) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248443.1 CDS STMDT12_C27470 NC_016860.1 2868281 2869381 R COG3500 Phage protein D; late control-like protein complement(2868281..2869381) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248444.1 CDS STMDT12_C27480 NC_016860.1 2869378 2869863 R COG3499 Phage protein U; putative phage tail protein complement(2869378..2869863) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248445.1 CDS STMDT12_C27490 NC_016860.1 2869860 2872667 R COG5283 Phage-related tail protein; phage tail-like protein complement(2869860..2872667) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248446.1 CDS STMDT12_C27500 NC_016860.1 2872660 2872779 R gpE-like protein complement(2872660..2872779) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248447.1 CDS STMDT12_C27510 NC_016860.1 2872794 2873096 R phage tail protein E complement(2872794..2873096) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248448.1 CDS STMDT12_C27520 NC_016860.1 2873151 2873666 R COG3498 Phage tail tube protein FII; phage tail fiber-like protein complement(2873151..2873666) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248449.1 CDS STMDT12_C27530 NC_016860.1 2873676 2874848 R COG3497 Phage tail sheath protein FI; major tail sheath protein complement(2873676..2874848) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248450.1 CDS STMDT12_C27540 NC_016860.1 2874951 2875508 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA invertase-like protein complement(2874951..2875508) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248451.1 CDS STMDT12_C27550 NC_016860.1 2875538 2876557 D hypothetical protein 2875538..2876557 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248452.1 CDS STMDT12_C27560 NC_016860.1 2876564 2876971 D tail fiber assembly-likeprotein 2876564..2876971 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248453.1 CDS STMDT12_C27570 NC_016860.1 2876975 2877562 R hypothetical protein complement(2876975..2877562) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248454.1 CDS STMDT12_C27580 NC_016860.1 2877562 2879136 R COG5301 Phage-related tail fibre protein; phage tail-like protein complement(2877562..2879136) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248455.1 CDS STMDT12_C27590 NC_016860.1 2879133 2879738 R COG4385 Bacteriophage P2-related tail formation protein; putative phage tail protein complement(2879133..2879738) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248456.1 CDS STMDT12_C27600 NC_016860.1 2879731 2880639 R COG3948 Phage-related baseplate assembly protein; phage tail-like protein complement(2879731..2880639) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248457.1 CDS STMDT12_C27610 NC_016860.1 2880626 2880985 R COG3628 Phage baseplate assembly protein W; base plate tail-like protein complement(2880626..2880985) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248458.1 CDS STMDT12_C27620 NC_016860.1 2880982 2881560 R COG4540 Phage P2 baseplate assembly protein gpV; phage baseplate assembly-like protein complement(2880982..2881560) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248459.1 CDS STMDT12_C27630 NC_016860.1 2881629 2882075 R phage tail-like protein complement(2881629..2882075) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248460.1 CDS STMDT12_C27640 NC_016860.1 2882068 2882499 R putative phage tail protein complement(2882068..2882499) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248461.1 CDS STMDT12_C27650 NC_016860.1 2882595 2883023 R lysis-like protein complement(2882595..2883023) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248462.1 CDS STMDT12_C27660 NC_016860.1 2883020 2883394 R hypothetical protein complement(2883020..2883394) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248463.1 CDS STMDT12_C27670 NC_016860.1 2883399 2883908 R COG3772 Phage-related lysozyme (muraminidase); phage lysozyme complement(2883399..2883908) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248464.1 CDS STMDT12_C27680 NC_016860.1 2883889 2884104 R holin family protein complement(2883889..2884104) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248465.1 CDS STMDT12_C27690 NC_016860.1 2884108 2884311 R COG5004 P2-like prophage tail protein X; phage tail-like protein complement(2884108..2884311) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248466.1 CDS STMDT12_C27700 NC_016860.1 2884311 2884775 R head completion-like protein complement(2884311..2884775) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248467.1 CDS STMDT12_C27710 NC_016860.1 2884869 2885522 R terminase-like protein complement(2884869..2885522) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248468.1 CDS STMDT12_C27720 NC_016860.1 2885526 2886608 R major capsid-like protein complement(2885526..2886608) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248469.1 CDS STMDT12_C27730 NC_016860.1 2886625 2887458 R capsid scaffold-like protein complement(2886625..2887458) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248470.1 CDS STMDT12_C27740 NC_016860.1 2887601 2889367 D COG5484 Uncharacterized conserved protein; terminase-like protein 2887601..2889367 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248471.1 CDS STMDT12_C27750 NC_016860.1 2889367 2890407 D COG5518 Bacteriophage capsid portal protein; portal vertex-like protein 2889367..2890407 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248472.1 CDS STMDT12_C27760 NC_016860.1 2890493 2892190 R hypothetical protein complement(2890493..2892190) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248473.1 CDS STMDT12_C27770 NC_016860.1 2892458 2893135 R hypothetical protein complement(2892458..2893135) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248474.1 CDS STMDT12_C27780 NC_016860.1 2893249 2893482 R COG1158 Transcription termination factor; prophage protein complement(2893249..2893482) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248475.1 CDS STMDT12_C27790 NC_016860.1 2893493 2893681 R hypothetical protein complement(2893493..2893681) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248476.1 CDS STMDT12_C27800 NC_016860.1 2893834 2896263 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; hypothetical protein complement(2893834..2896263) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248477.1 CDS STMDT12_C27810 NC_016860.1 2896254 2897111 R COG0338 Site-specific DNA methylase; DNA adenine methylase-like protein complement(2896254..2897111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248478.1 CDS STMDT12_C27820 NC_016860.1 2897108 2897335 R COG1734 DnaK suppressor protein; C4-type zinc finger protein, DksA/TraR family complement(2897108..2897335) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248479.1 CDS STMDT12_C27830 NC_016860.1 2897335 2897568 R hypothetical protein complement(2897335..2897568) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248480.1 CDS STMDT12_C27840 NC_016860.1 2897636 2897977 R hypothetical protein complement(2897636..2897977) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248481.1 CDS STMDT12_C27850 NC_016860.1 2898197 2898655 D hypothetical protein 2898197..2898655 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248482.1 CDS STMDT12_C27860 NC_016860.1 2898603 2898836 R hypothetical protein complement(2898603..2898836) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248483.1 CDS STMDT12_C27870 NC_016860.1 2898844 2899353 R phage regulatory protein complement(2898844..2899353) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248484.1 CDS STMDT12_C27880 NC_016860.1 2899389 2899628 R phage regulatory protein complement(2899389..2899628) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248485.1 CDS STMDT12_C27890 NC_016860.1 2899745 2900377 D COG2932 Predicted transcriptional regulator; phage repressor protein cI 2899745..2900377 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248486.1 CDS STMDT12_C27900 NC_016860.1 2900381 2901406 D COG0582 Integrase; phage integrase 2900381..2901406 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248489.1 CDS STMDT12_C27930 NC_016860.1 2902982 2903620 D hypothetical protein 2902982..2903620 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248490.1 CDS STMDT12_C27940 NC_016860.1 2904064 2905203 D putative cytoplasmic protein 2904064..2905203 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248491.1 CDS STMDT12_C27950 NC_016860.1 2905538 2906350 R COG2445 Uncharacterized conserved protein; putative cytoplasmic protein complement(2905538..2906350) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248492.1 CDS STMDT12_C27960 NC_016860.1 2906816 2907031 D COG3311 Predicted transcriptional regulator; putative cytoplasmic protein 2906816..2907031 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248493.1 CDS STMDT12_C27970 NC_016860.1 2907067 2909136 D COG5519 Superfamily II helicase and inactivated derivatives; putative inner membrane protein 2907067..2909136 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248494.1 CDS STMDT12_C27980 NC_016860.1 2909753 2910922 D COG0178 Excinuclease ATPase subunit; putative ATPase 2909753..2910922 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248495.1 CDS STMDT12_C27990 NC_016860.1 2910919 2911785 D putative cytoplasmic protein 2910919..2911785 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248496.1 CDS STMDT12_C28000 NC_016860.1 2911939 2912253 R COG1396 Predicted transcriptional regulators; putative transcriptional regulator complement(2911939..2912253) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248497.1 CDS STMDT12_C28010 NC_016860.1 2912390 2912674 D COG3423 Predicted transcriptional regulator; maltose metabolism regulator 2912390..2912674 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248498.1 CDS STMDT12_C28020 NC_016860.1 2912787 2913308 D COG3730 Phosphotransferase system sorbitol-specific component IIC; glucitol/sorbitol-specific PTS system IIC protein 2912787..2913308 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248499.1 CDS STMDT12_C28030 NC_016860.1 2913305 2913679 D COG3731 Phosphotransferase system sorbitol-specific component IIA; putative glucitol-specific PTS system III protein 2913305..2913679 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248500.1 CDS STMDT12_C28040 NC_016860.1 2913676 2914656 D COG3732 Phosphotransferase system sorbitol-specific component IIBC; glucitol/sorbitol-specific PTS system IIB protein 2913676..2914656 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248501.1 CDS STMDT12_C28050 NC_016860.1 2914667 2915680 D COG0673 Predicted dehydrogenases and related proteins; putative dehydrogenase 2914667..2915680 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248502.1 CDS STMDT12_C28060 NC_016860.1 2915975 2917177 D COG1401 GTPase subunit of restriction endonuclease; putative hexulose 6 phosphate synthase 2915975..2917177 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248503.1 CDS STMDT12_C28070 NC_016860.1 2917251 2917886 R COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-hexulose-6-phosphate synthase complement(2917251..2917886) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248504.1 CDS STMDT12_C28080 NC_016860.1 2917910 2918473 R COG0794 Predicted sugar phosphate isomerase involved in capsule formation; putative sugar phosphate aminotransferase complement(2917910..2918473) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248505.1 CDS STMDT12_C28090 NC_016860.1 2918473 2919315 R COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes; putative cytoplasmic protein complement(2918473..2919315) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248506.1 CDS STMDT12_C28100 NC_016860.1 2919445 2920986 R COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; putative PTS system IIC protein complement(2919445..2920986) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248507.1 CDS STMDT12_C28110 NC_016860.1 2921209 2922888 D COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC transporter substrate binding protein 2921209..2922888 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248508.1 CDS STMDT12_C28120 NC_016860.1 2924005 2924880 D COG4974 Site-specific recombinase XerD; DNA-binding prophage protein 2924005..2924880 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248509.1 CDS STMDT12_C28130 NC_016860.1 2925046 2926920 D putative inner membrane protein 2925046..2926920 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248510.1 CDS STMDT12_C28140 NC_016860.1 2927180 2928502 R putative inner membrane protein complement(2927180..2928502) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248511.1 CDS STMDT12_C28150 NC_016860.1 2929041 2929637 D COG0582 Integrase; phage integrase family protein 2929041..2929637 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248512.1 CDS STMDT12_C28160 NC_016860.1 2930018 2930410 R COG2801 Transposase and inactivated derivatives; putative transposase complement(2930018..2930410) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248513.1 CDS STMDT12_C28170 NC_016860.1 2930632 2930898 R COG2801 Transposase and inactivated derivatives; putative transposase complement(2930632..2930898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248514.1 CDS STMDT12_C28180 NC_016860.1 2931351 2931989 R putative cytoplasmic protein complement(2931351..2931989) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248515.1 CDS STMDT12_C28190 NC_016860.1 2931986 2933968 R COG3972 Superfamily I DNA and RNA helicases; putative DNA/RNA helicase complement(2931986..2933968) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248516.1 CDS STMDT12_C28200 NC_016860.1 2934247 2934546 D COG2963 Transposase and inactivated derivatives; IS3 transposase OrfA 2934247..2934546 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248517.1 CDS STMDT12_C28210 NC_016860.1 2934543 2935409 D COG2801 Transposase and inactivated derivatives; IS3 transposase InsF 2934543..2935409 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248518.1 CDS STMDT12_C28220 NC_016860.1 2935935 2936111 R hypothetical protein complement(2935935..2936111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248519.1 CDS STMDT12_C28230 NC_016860.1 2936189 2936719 R phase-1 flagellin repressor complement(2936189..2936719) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248520.1 CDS STMDT12_C28240 NC_016860.1 2936796 2937914 R COG1344 Flagellin and related hook-associated proteins; putative frameshift mutation; flagellin complement(2936796..2937914) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248521.1 CDS STMDT12_C28250 NC_016860.1 2937978 2938316 R COG1344 Flagellin and related hook-associated proteins; putative frameshift mutation; flagellin complement(2937978..2938316) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248522.1 CDS STMDT12_C28260 NC_016860.1 2938408 2938980 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA-invertase Hin 2938408..2938980 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248523.1 CDS STMDT12_C28270 NC_016860.1 2939943 2941058 D COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase; putative glycosyl transferase 2939943..2941058 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248524.1 CDS STMDT12_C28280 NC_016860.1 2941139 2944792 D COG1132 ABC-type multidrug transport system, ATPase and permease components; putative ABC transporter permease/ATP-binding protein 2941139..2944792 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248525.1 CDS STMDT12_C28290 NC_016860.1 2944902 2946146 D COG2382 Enterochelin esterase and related enzymes; putative enterochelin esterase 2944902..2946146 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248526.1 CDS STMDT12_C28300 NC_016860.1 2946178 2947113 D COG2819 Predicted hydrolase of the alpha/beta superfamily; IroE 2946178..2947113 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248527.1 CDS STMDT12_C28310 NC_016860.1 2947155 2949329 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA complement(2947155..2949329) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248528.1 CDS STMDT12_C28320 NC_016860.1 2950368 2951420 R COG1357 Uncharacterized low-complexity proteins; secreted effector protein complement(2950368..2951420) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248529.1 CDS STMDT12_C28330 NC_016860.1 2951939 2952868 D COG2990 Uncharacterized protein conserved in bacteria; virulence protein 2951939..2952868 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248530.1 CDS STMDT12_C28340 NC_016860.1 2953161 2954057 D putative transcriptional activator 2953161..2954057 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248531.1 CDS STMDT12_C28350 NC_016860.1 2954573 2954686 D putative inner membrane protein 2954573..2954686 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248532.1 CDS STMDT12_C28360 NC_016860.1 2954779 2955792 R COG3376 High-affinity nickel permease; putative nickel transporter complement(2954779..2955792) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248533.1 CDS STMDT12_C28370 NC_016860.1 2955925 2957340 R COG0642 Signal transduction histidine kinase; tricarboxylic transport: regulatory protein complement(2955925..2957340) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248534.1 CDS STMDT12_C28380 NC_016860.1 2957327 2958001 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator complement(2957327..2958001) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248535.1 CDS STMDT12_C28390 NC_016860.1 2958156 2959133 D COG3181 Uncharacterized protein conserved in bacteria; tricarboxylic transport protein 2958156..2959133 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248536.1 CDS STMDT12_C28400 NC_016860.1 2959148 2959579 D tricarboxylic transport protein 2959148..2959579 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248537.1 CDS STMDT12_C28410 NC_016860.1 2959590 2961104 D COG3333 Uncharacterized protein conserved in bacteria; hypothetical protein 2959590..2961104 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248538.1 CDS STMDT12_C28420 NC_016860.1 2961407 2962384 D hypothetical protein 2961407..2962384 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248539.1 CDS STMDT12_C28430 NC_016860.1 2962410 2963678 D COG0579 Predicted dehydrogenase; hydroxyglutarate oxidase 2962410..2963678 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248540.1 CDS gabD NC_016860.1 2963700 2965148 D COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase I 2963700..2965148 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248541.1 CDS STMDT12_C28450 NC_016860.1 2965163 2966446 D COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate aminotransferase 2965163..2966446 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248542.1 CDS STMDT12_C28460 NC_016860.1 2966576 2967976 D COG1113 Gamma-aminobutyrate permease and related permeases; gamma-aminobutyrate transporter 2966576..2967976 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248543.1 CDS STMDT12_C28470 NC_016860.1 2968018 2968695 D COG1802 Transcriptional regulators; DNA-binding transcriptional regulator CsiR 2968018..2968695 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248544.1 CDS STMDT12_C28480 NC_016860.1 2968717 2969166 R COG1652 Uncharacterized protein containing LysM domain; LysM domain/BON superfamily protein complement(2968717..2969166) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248545.1 CDS STMDT12_C28490 NC_016860.1 2969266 2969424 R COG0401 Uncharacterized homolog of Blt101; hypothetical protein complement(2969266..2969424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248546.1 CDS STMDT12_C28500 NC_016860.1 2969607 2969906 D COG0640 Predicted transcriptional regulators; putative ArsR-family transcriptional regulator 2969607..2969906 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248547.1 CDS STMDT12_C28510 NC_016860.1 2969916 2970443 D COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 2969916..2970443 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248548.1 CDS STMDT12_C28520 NC_016860.1 2970522 2970701 D hypothetical protein 2970522..2970701 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248549.1 CDS STMDT12_C28530 NC_016860.1 2970791 2971192 R COG2916 DNA-binding protein H-NS; DNA-binding protein StpA complement(2970791..2971192) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248550.1 CDS STMDT12_C28540 NC_016860.1 2971891 2972340 D membrane protein 2971891..2972340 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248551.1 CDS STMDT12_C28550 NC_016860.1 2972375 2972725 R hypothetical protein complement(2972375..2972725) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248552.1 CDS STMDT12_C28560 NC_016860.1 2972887 2973213 D COG4575 Uncharacterized conserved protein; hypothetical protein 2972887..2973213 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248553.1 CDS STMDT12_C28570 NC_016860.1 2973297 2974631 R COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; putative regulatory protein complement(2973297..2974631) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248554.1 CDS STMDT12_C28580 NC_016860.1 2974720 2975151 D COG2128 Uncharacterized conserved protein; putative cytoplasmic protein 2974720..2975151 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248555.1 CDS STMDT12_C28590 NC_016860.1 2975423 2975668 D COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein 2975423..2975668 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248556.1 CDS nrdI NC_016860.1 2975665 2976075 D COG1780 Protein involved in ribonucleotide reduction; ribonucleotide reductase stimulatory protein 2975665..2976075 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248557.1 CDS STMDT12_C28610 NC_016860.1 2976075 2978192 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 2976075..2978192 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248558.1 CDS nrdF NC_016860.1 2978203 2979162 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 2978203..2979162 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248559.1 CDS STMDT12_C28630 NC_016860.1 2979517 2980719 D COG4175 ABC-type proline/glycine betaine transport system, ATPase component; glycine betaine ABC transporter ATP-binding protein 2979517..2980719 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248560.1 CDS STMDT12_C28640 NC_016860.1 2980712 2981776 D COG4176 ABC-type proline/glycine betaine transport system, permease component; glycine betaine ABC transporter permease 2980712..2981776 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248561.1 CDS proX NC_016860.1 2981846 2982841 D COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; glycine betaine ABC transporter substrate binding protein 2981846..2982841 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248562.1 CDS STMDT12_C28660 NC_016860.1 2983006 2984190 D COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter 2983006..2984190 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248563.1 CDS STMDT12_C28670 NC_016860.1 2984687 2985217 D COG1846 Transcriptional regulators; transcriptional repressor MprA 2984687..2985217 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248564.1 CDS STMDT12_C28680 NC_016860.1 2985344 2986516 D COG1566 Multidrug resistance efflux pump; multidrug resistance secretion protein 2985344..2986516 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248565.1 CDS STMDT12_C28690 NC_016860.1 2986533 2988071 D COG0477 Permeases of the major facilitator superfamily; putative multidrug transporter 2986533..2988071 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248566.1 CDS STMDT12_C28700 NC_016860.1 2988120 2989490 R putative glycoporin complement(2988120..2989490) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248567.1 CDS STMDT12_C28710 NC_016860.1 2989836 2990351 R COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase complement(2989836..2990351) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248568.1 CDS STMDT12_C28720 NC_016860.1 2990501 2992057 R COG2918 Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase complement(2990501..2992057) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248569.1 CDS STMDT12_C28730 NC_016860.1 2992134 2992559 R COG1238 Predicted membrane protein; hypothetical protein complement(2992134..2992559) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248570.1 CDS STMDT12_C28740 NC_016860.1 2992556 2993122 R COG0637 Predicted phosphatase/phosphohexomutase; fructose-1-phosphatase complement(2992556..2993122) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248571.1 CDS STMDT12_C28750 NC_016860.1 2994378 2994563 R COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator complement(2994378..2994563) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248572.1 CDS alaS NC_016860.1 2994798 2997428 R COG0013 Alanyl-tRNA synthetase; alanyl-tRNA synthetase complement(2994798..2997428) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248573.1 CDS recX NC_016860.1 2997664 2998164 R COG2137 Uncharacterized protein conserved in bacteria; recombination regulator RecX complement(2997664..2998164) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248574.1 CDS recA NC_016860.1 2998281 2999342 R COG0468 RecA/RadA recombinase; recombinase A complement(2998281..2999342) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248575.1 CDS STMDT12_C28790 NC_016860.1 2999427 2999927 R COG1546 Uncharacterized protein (competence- and mitomycin-induced); competence damage-inducible protein A complement(2999427..2999927) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248576.1 CDS STMDT12_C28800 NC_016860.1 3000402 3001481 R COG2951 Membrane-bound lytic murein transglycosylase B; murein hydrolase B complement(3000402..3001481) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248577.1 CDS STMDT12_C28810 NC_016860.1 3001735 3002298 D COG3730 Phosphotransferase system sorbitol-specific component IIC; glucitol/sorbitol-specific PTS system IIBC protein 3001735..3002298 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248578.1 CDS STMDT12_C28820 NC_016860.1 3002295 3003266 D COG3732 Phosphotransferase system sorbitol-specific component IIBC; glucitol/sorbitol-specific PTS system IIB protein 3002295..3003266 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248579.1 CDS STMDT12_C28830 NC_016860.1 3003278 3003640 D COG3731 Phosphotransferase system sorbitol-specific component IIA; glucitol/sorbitol-specific PTS system IIA protein 3003278..3003640 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248580.1 CDS STMDT12_C28840 NC_016860.1 3003652 3004431 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate dehydrogenase 3003652..3004431 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248581.1 CDS STMDT12_C28850 NC_016860.1 3004507 3004866 D COG4578 Glucitol operon activator; DNA-binding transcriptional activator GutM 3004507..3004866 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248582.1 CDS srlR NC_016860.1 3005064 3005837 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor SrlR 3005064..3005837 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248583.1 CDS gutQ NC_016860.1 3005830 3006795 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3005830..3006795 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248584.1 CDS STMDT12_C28880 NC_016860.1 3006792 3008312 R COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; anaerobic nitric oxide reductase transcriptional regulator complement(3006792..3008312) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248585.1 CDS STMDT12_C28890 NC_016860.1 3008498 3009937 D COG0426 Uncharacterized flavoproteins; anaerobic nitric oxide reductase flavorubredoxin 3008498..3009937 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248586.1 CDS STMDT12_C28900 NC_016860.1 3009934 3011067 D COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; nitric oxide reductase 3009934..3011067 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248587.1 CDS STMDT12_C28910 NC_016860.1 3011164 3013404 R COG0068 Hydrogenase maturation factor; hydrogenase maturation protein complement(3011164..3013404) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248588.1 CDS STMDT12_C28920 NC_016860.1 3013550 3014095 R COG1142 Fe-S-cluster-containing hydrogenase components 2; electron transport protein HydN complement(3013550..3014095) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248589.1 CDS STMDT12_C28930 NC_016860.1 3014296 3015105 R hypothetical protein complement(3014296..3015105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248590.1 CDS hycI NC_016860.1 3015132 3015602 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 3 maturation protease complement(3015132..3015602) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248591.1 CDS STMDT12_C28950 NC_016860.1 3015595 3016005 R hydrogenase 3 large subunit processing protein complement(3015595..3016005) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248592.1 CDS STMDT12_C28960 NC_016860.1 3016002 3016769 R COG3260 Ni,Fe-hydrogenase III small subunit; formate hydrogenlyase subunit G complement(3016002..3016769) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248593.1 CDS STMDT12_C28970 NC_016860.1 3016769 3017311 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); formate hydrogenlyase iron-sulfur subunit complement(3016769..3017311) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248594.1 CDS STMDT12_C28980 NC_016860.1 3017321 3019030 R COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; formate hydrogenlyase subunit E complement(3017321..3019030) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248595.1 CDS STMDT12_C28990 NC_016860.1 3019048 3019971 R COG0650 Formate hydrogenlyase subunit 4; hydrogenase 3 membrane subunit complement(3019048..3019971) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248596.1 CDS STMDT12_C29000 NC_016860.1 3019974 3021800 R COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; formate hydrogenlyase subunit 3 complement(3019974..3021800) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248597.1 CDS STMDT12_C29010 NC_016860.1 3021800 3022408 R COG1142 Fe-S-cluster-containing hydrogenase components 2; formate hydrogenlyase subunit 2 complement(3021800..3022408) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248598.1 CDS STMDT12_C29020 NC_016860.1 3022554 3023015 R formate hydrogenlyase regulatory protein HycA complement(3022554..3023015) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248599.1 CDS hypA NC_016860.1 3023225 3023581 D COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 3023225..3023581 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248600.1 CDS STMDT12_C29040 NC_016860.1 3023650 3024522 D COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase nickel incorporation protein HypB 3023650..3024522 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248601.1 CDS STMDT12_C29050 NC_016860.1 3024513 3024785 D COG0298 Hydrogenase maturation factor; hydrogenase assembly chaperone 3024513..3024785 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248602.1 CDS STMDT12_C29060 NC_016860.1 3024785 3025906 D COG0409 Hydrogenase maturation factor; hydrogenase expression/formation protein HypD 3024785..3025906 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248603.1 CDS STMDT12_C29070 NC_016860.1 3025903 3026913 D COG0309 Hydrogenase maturation factor; hydrogenase expression/formation protein HypE 3025903..3026913 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248604.1 CDS STMDT12_C29080 NC_016860.1 3027147 3029210 D COG1132 ABC-type multidrug transport system, ATPase and permease components; formate hydrogen-lyase transcriptional activator 3027147..3029210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248605.1 CDS STMDT12_C29090 NC_016860.1 3029272 3029616 R hypothetical protein complement(3029272..3029616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248606.1 CDS STMDT12_C29100 NC_016860.1 3029798 3030715 D COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; periplasmic chelated iron-binding protein YfeA 3029798..3030715 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248607.1 CDS STMDT12_C29110 NC_016860.1 3030712 3031533 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; iron transport protein, ATP-binding component 3030712..3031533 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248608.1 CDS STMDT12_C29120 NC_016860.1 3031530 3032390 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; iron transport protein, inner membrane component 3031530..3032390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248609.1 CDS STMDT12_C29130 NC_016860.1 3032381 3033229 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; chelated iron ABC transporter permease protein YfeD 3032381..3033229 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248610.1 CDS STMDT12_C29140 NC_016860.1 3033328 3034194 R secreted effector protein complement(3033328..3034194) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248611.1 CDS STMDT12_C29150 NC_016860.1 3034397 3035152 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative AraC family transcriptional regulator complement(3034397..3035152) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248612.1 CDS STMDT12_C29160 NC_016860.1 3035537 3036424 R COG2207 AraC-type DNA-binding domain-containing proteins; hypothetical protein complement(3035537..3036424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248613.1 CDS STMDT12_C29170 NC_016860.1 3036769 3037131 R putative cytoplasmic protein complement(3036769..3037131) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248614.1 CDS STMDT12_C29180 NC_016860.1 3037218 3037898 R oxygen-regulated invasion protein complement(3037218..3037898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248615.1 CDS STMDT12_C29190 NC_016860.1 3037855 3038433 R cell invasion protein complement(3037855..3038433) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248616.1 CDS STMDT12_C29200 NC_016860.1 3038426 3039184 R COG4669 Type III secretory pathway, lipoprotein EscJ; pathogenicity 1 island effector protein complement(3038426..3039184) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248617.1 CDS STMDT12_C29210 NC_016860.1 3039181 3039486 R pathogenicity 1 island effector protein complement(3039181..3039486) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248618.1 CDS STMDT12_C29220 NC_016860.1 3039505 3039747 R COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; pathogenicity 1 island effector protein complement(3039505..3039747) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248619.1 CDS STMDT12_C29230 NC_016860.1 3039772 3040836 R cell invasion protein complement(3039772..3040836) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248620.1 CDS STMDT12_C29240 NC_016860.1 3041266 3042195 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator HilD 3041266..3042195 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248621.1 CDS STMDT12_C29250 NC_016860.1 3043286 3044947 D COG3710 DNA-binding winged-HTH domains; invasion protein regulator 3043286..3044947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248622.1 CDS STMDT12_C29260 NC_016860.1 3044965 3045447 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); cell invasion protein 3044965..3045447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248623.1 CDS STMDT12_C29270 NC_016860.1 3045501 3047132 R COG2453 Predicted protein-tyrosine phosphatase; protein tyrosine phosphatase/GTPase activating protein complement(3045501..3047132) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248624.1 CDS STMDT12_C29280 NC_016860.1 3047119 3047511 R secretion system chaperone complement(3047119..3047511) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248625.1 CDS STMDT12_C29290 NC_016860.1 3047538 3047798 R hypothetical protein complement(3047538..3047798) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248626.1 CDS STMDT12_C29300 NC_016860.1 3047842 3048090 R COG0236 Acyl carrier protein; acyl carrier protein complement(3047842..3048090) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248627.1 CDS STMDT12_C29310 NC_016860.1 3048109 3050166 R secreted effector protein complement(3048109..3050166) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248628.1 CDS STMDT12_C29320 NC_016860.1 3050185 3051216 R translocation machinery component complement(3050185..3051216) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248629.1 CDS STMDT12_C29330 NC_016860.1 3051287 3052516 R pathogenicity 1 island effector protein complement(3051287..3052516) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248630.1 CDS STMDT12_C29340 NC_016860.1 3052544 3054325 R cell invasion protein complement(3052544..3054325) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248631.1 CDS STMDT12_C29350 NC_016860.1 3054328 3054825 R COG0457 FOG: TPR repeat; type III secretion low calcium response chaperone LcrH/SycD complement(3054328..3054825) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248632.1 CDS STMDT12_C29360 NC_016860.1 3054963 3056033 R COG1377 Flagellar biosynthesis pathway, component FlhB; surface presentation of antigens protein SpaS complement(3054963..3056033) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248633.1 CDS STMDT12_C29370 NC_016860.1 3056020 3056811 R COG4791 Type III secretory pathway, component EscT; type III secretion system apparatus protein SpaR/YscT/HrcT complement(3056020..3056811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248634.1 CDS STMDT12_C29380 NC_016860.1 3056815 3057075 R COG4794 Type III secretory pathway, component EscS; protein EpaQ complement(3056815..3057075) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248635.1 CDS spaP NC_016860.1 3057101 3057775 R COG4790 Type III secretory pathway, component EscR; surface presentation of antigens protein SpaP complement(3057101..3057775) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248636.1 CDS STMDT12_C29400 NC_016860.1 3057765 3058676 R COG1886 Flagellar motor switch/type III secretory pathway protein; surface presentation of antigens protein SpaO complement(3057765..3058676) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248637.1 CDS STMDT12_C29410 NC_016860.1 3058676 3059686 R needle length control protein complement(3058676..3059686) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248638.1 CDS spaM NC_016860.1 3059686 3060129 R surface presentation of antigens protein SpaM complement(3059686..3060129) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248639.1 CDS STMDT12_C29430 NC_016860.1 3060107 3061402 R COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase SpaL complement(3060107..3061402) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248640.1 CDS STMDT12_C29440 NC_016860.1 3061399 3061806 R surface presentation of antigens protein SpaK complement(3061399..3061806) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248641.1 CDS STMDT12_C29450 NC_016860.1 3061830 3063887 R COG4789 Type III secretory pathway, component EscV; invasion protein InvA complement(3061830..3063887) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248642.1 CDS STMDT12_C29460 NC_016860.1 3063912 3065030 R invasion protein InvE complement(3063912..3065030) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248643.1 CDS STMDT12_C29470 NC_016860.1 3065027 3066715 R COG1450 Type II secretory pathway, component PulD; type III secretion outer membrane pore, YscC/HrcC family complement(3065027..3066715) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248644.1 CDS STMDT12_C29480 NC_016860.1 3066712 3067461 R COG2207 AraC-type DNA-binding domain-containing proteins; invasion protein complement(3066712..3067461) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248645.1 CDS STMDT12_C29490 NC_016860.1 3067819 3068262 D cell adherance/invasion protein 3067819..3068262 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248646.1 CDS STMDT12_C29500 NC_016860.1 3068693 3069142 D putative cytoplasmic protein 3068693..3069142 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248647.1 CDS STMDT12_C29510 NC_016860.1 3069127 3069474 D hypothetical protein 3069127..3069474 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248648.1 CDS STMDT12_C29520 NC_016860.1 3069747 3070073 R putative cytoplasmic protein complement(3069747..3070073) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248649.1 CDS STMDT12_C29530 NC_016860.1 3070771 3071052 D COG4453 Uncharacterized protein conserved in bacteria; ABC transporter permease 3070771..3071052 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248650.1 CDS STMDT12_C29540 NC_016860.1 3071049 3071576 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; pathogenicity island protein 3071049..3071576 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248651.1 CDS STMDT12_C29550 NC_016860.1 3071649 3071789 R putative cytoplasmic protein complement(3071649..3071789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248652.1 CDS STMDT12_C29560 NC_016860.1 3072201 3072857 D COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 2 3072201..3072857 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248653.1 CDS STMDT12_C29570 NC_016860.1 3073029 3073214 R putative cytoplasmic protein complement(3073029..3073214) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248654.1 CDS mutS NC_016860.1 3073709 3076276 D COG0249 Mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS 3073709..3076276 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248655.1 CDS STMDT12_C29590 NC_016860.1 3076332 3076712 R COG4460 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3076332..3076712) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248656.1 CDS STMDT12_C29600 NC_016860.1 3076709 3077917 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(3076709..3077917) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248657.1 CDS STMDT12_C29610 NC_016860.1 3078026 3078937 D COG0583 Transcriptional regulator; putative transcriptional regulator 3078026..3078937 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248658.1 CDS STMDT12_C29620 NC_016860.1 3078979 3080475 R COG2610 H+/gluconate symporter and related permeases; putative permease complement(3078979..3080475) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248659.1 CDS STMDT12_C29630 NC_016860.1 3080472 3081422 R COG0451 Nucleoside-diphosphate-sugar epimerases; putative nucleoside-diphosphate-sugar epimerase complement(3080472..3081422) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248660.1 CDS STMDT12_C29640 NC_016860.1 3081462 3082238 R COG3622 Hydroxypyruvate isomerase; hypothetical protein complement(3081462..3082238) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248661.1 CDS STMDT12_C29650 NC_016860.1 3082243 3082881 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; putative aldolase complement(3082243..3082881) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248662.1 CDS STMDT12_C29660 NC_016860.1 3082878 3084140 R COG3395 Uncharacterized protein conserved in bacteria; putative tRNA synthase complement(3082878..3084140) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248663.1 CDS STMDT12_C29670 NC_016860.1 3084134 3085057 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; hypothetical protein complement(3084134..3085057) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248664.1 CDS STMDT12_C29680 NC_016860.1 3085254 3086018 D COG1349 Transcriptional regulators of sugar metabolism; DeoR-family transcriptional regulator 3085254..3086018 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248665.1 CDS STMDT12_C29690 NC_016860.1 3086037 3086441 R COG1846 Transcriptional regulators; transcriptional regulator hosA complement(3086037..3086441) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248666.1 CDS STMDT12_C29700 NC_016860.1 3086612 3087205 D COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 4-hydroxybenzoate decarboxylase subunit B 3086612..3087205 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248667.1 CDS STMDT12_C29710 NC_016860.1 3087205 3088632 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 3087205..3088632 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248668.1 CDS STMDT12_C29720 NC_016860.1 3088643 3088879 D 4-hydroxybenzoate decarboxylase subunit D 3088643..3088879 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248669.1 CDS STMDT12_C29730 NC_016860.1 3088924 3089916 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoS complement(3088924..3089916) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248670.1 CDS nlpD NC_016860.1 3089979 3091112 R COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein NlpD complement(3089979..3091112) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248671.1 CDS pcm NC_016860.1 3091288 3091914 R COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase complement(3091288..3091914) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248672.1 CDS surE NC_016860.1 3091908 3092675 R COG0496 Predicted acid phosphatase; stationary phase survival protein SurE complement(3091908..3092675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248673.1 CDS truD NC_016860.1 3092650 3093699 R COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D complement(3092650..3093699) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248674.1 CDS ispF NC_016860.1 3093696 3094175 R COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(3093696..3094175) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248675.1 CDS ispD NC_016860.1 3094175 3094885 R COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3094175..3094885) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248676.1 CDS ftsB NC_016860.1 3094904 3095215 R COG2919 Septum formation initiator; cell division protein FtsB complement(3094904..3095215) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248677.1 CDS STMDT12_C29810 NC_016860.1 3095406 3095684 R hypothetical protein complement(3095406..3095684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248678.1 CDS STMDT12_C29820 NC_016860.1 3095780 3096385 R COG0529 Adenylylsulfate kinase and related kinases; adenylylsulfate kinase complement(3095780..3096385) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248679.1 CDS cysN NC_016860.1 3096372 3097811 R COG2895 GTPases - Sulfate adenylate transferase subunit 1; sulfate adenylyltransferase subunit 1 complement(3096372..3097811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248680.1 CDS STMDT12_C29840 NC_016860.1 3097821 3098729 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; sulfate adenylyltransferase subunit 2 complement(3097821..3098729) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248681.1 CDS STMDT12_C29850 NC_016860.1 3098980 3100026 D COG2234 Predicted aminopeptidases; alkaline phosphatase isozyme conversion aminopeptidase 3098980..3100026 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248682.1 CDS STMDT12_C29860 NC_016860.1 3101109 3101417 D hypothetical protein 3101109..3101417 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248683.1 CDS STMDT12_C29870 NC_016860.1 3101490 3101783 R hypothetical protein complement(3101490..3101783) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248684.1 CDS STMDT12_C29880 NC_016860.1 3101783 3102703 R COG1518 Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated Cas1 family protein complement(3101783..3102703) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248685.1 CDS STMDT12_C29890 NC_016860.1 3102700 3103350 R CRISPR-associated Cas3 family protein complement(3102700..3103350) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248686.1 CDS STMDT12_C29900 NC_016860.1 3103332 3104078 R putative cytoplasmic protein complement(3103332..3104078) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248687.1 CDS STMDT12_C29910 NC_016860.1 3104089 3105147 R putative cytoplasmic protein complement(3104089..3105147) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248688.1 CDS STMDT12_C29920 NC_016860.1 3105161 3105721 R CRISPR-associated Cas2 family protein complement(3105161..3105721) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248689.1 CDS STMDT12_C29930 NC_016860.1 3105718 3107274 R putative cytoplasmic protein complement(3105718..3107274) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248690.1 CDS STMDT12_C29940 NC_016860.1 3107286 3109949 R COG1203 Predicted helicases; putative helicase complement(3107286..3109949) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248691.1 CDS STMDT12_C29950 NC_016860.1 3110265 3111347 D secreted protein Sop family 3110265..3111347 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248692.1 CDS STMDT12_C29960 NC_016860.1 3111435 3112169 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase complement(3111435..3112169) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248693.1 CDS STMDT12_C29970 NC_016860.1 3112245 3113957 R COG0155 Sulfite reductase, beta subunit (hemoprotein); sulfite reductase subunit beta complement(3112245..3113957) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248694.1 CDS cysJ NC_016860.1 3113957 3115756 R COG0369 Sulfite reductase, alpha subunit (flavoprotein); sulfite reductase subunit alpha complement(3113957..3115756) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248695.1 CDS STMDT12_C29990 NC_016860.1 3116180 3116542 D COG0720 6-pyruvoyl-tetrahydropterin synthase; queuosine biosynthesis protein QueD 3116180..3116542 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248696.1 CDS STMDT12_C30000 NC_016860.1 3116630 3117427 R COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II; putative metal-dependent hydrolase complement(3116630..3117427) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248697.1 CDS STMDT12_C30010 NC_016860.1 3118721 3118852 D hypothetical protein 3118721..3118852 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248698.1 CDS STMDT12_C30020 NC_016860.1 3118836 3119024 D hypothetical protein 3118836..3119024 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248699.1 CDS STMDT12_C30030 NC_016860.1 3119803 3120474 R COG0602 Organic radical activating enzymes; hypothetical protein complement(3119803..3120474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248700.1 CDS eno NC_016860.1 3120610 3121908 R COG0148 Enolase; phosphopyruvate hydratase complement(3120610..3121908) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248701.1 CDS pyrG NC_016860.1 3121991 3123628 R COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase complement(3121991..3123628) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248702.1 CDS mazG NC_016860.1 3123856 3124656 R COG1694 Predicted pyrophosphatase; nucleoside triphosphate pyrophosphohydrolase complement(3123856..3124656) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248703.1 CDS STMDT12_C30070 NC_016860.1 3125424 3125720 R COG3668 Plasmid stabilization system protein; plasmid stabilization system protein, RelE/ParE family complement(3125424..3125720) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248704.1 CDS STMDT12_C30080 NC_016860.1 3125686 3125973 R COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein complement(3125686..3125973) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248705.1 CDS relA NC_016860.1 3126126 3128360 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; GDP/GTP pyrophosphokinase complement(3126126..3128360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248706.1 CDS rumA NC_016860.1 3128412 3129707 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase complement(3128412..3129707) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248707.1 CDS STMDT12_C30110 NC_016860.1 3129765 3132521 D COG0642 Signal transduction histidine kinase; hybrid two-component sensor kinase BarA 3129765..3132521 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248708.1 CDS STMDT12_C30120 NC_016860.1 3132565 3133707 R COG1929 Glycerate kinase; glycerate kinase complement(3132565..3133707) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248709.1 CDS STMDT12_C30130 NC_016860.1 3133785 3135125 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase complement(3133785..3135125) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248710.1 CDS STMDT12_C30140 NC_016860.1 3135146 3136486 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative D-glucarate dehydratase complement(3135146..3136486) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248711.1 CDS STMDT12_C30150 NC_016860.1 3136483 3137841 R COG0477 Permeases of the major facilitator superfamily; glucarate permease complement(3136483..3137841) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248712.1 CDS STMDT12_C30160 NC_016860.1 3138322 3138771 R COG0716 Flavodoxins; flavodoxin complement(3138322..3138771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248713.1 CDS truC NC_016860.1 3138790 3139572 R COG0564 Pseudouridylate synthases, 23S RNA-specific; tRNA pseudouridine synthase C complement(3138790..3139572) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248714.1 CDS STMDT12_C30180 NC_016860.1 3139572 3139901 R COG3098 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3139572..3139901) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248715.1 CDS STMDT12_C30190 NC_016860.1 3140513 3141058 R SecY interacting protein Syd complement(3140513..3141058) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248716.1 CDS queF NC_016860.1 3141127 3141975 D COG2904 Uncharacterized protein conserved in bacteria; 7-cyano-7-deazaguanine reductase 3141127..3141975 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248717.1 CDS STMDT12_C30210 NC_016860.1 3142088 3143452 D COG1611 Predicted Rossmann fold nucleotide-binding protein; lysine decarboxylase family protein 3142088..3143452 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248718.1 CDS STMDT12_C30220 NC_016860.1 3144017 3145306 D COG0814 Amino acid permeases; serine transporter 3144017..3145306 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248719.1 CDS STMDT12_C30230 NC_016860.1 3145365 3146732 D COG1760 L-serine deaminase; L-serine deaminase II 3145365..3146732 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248720.1 CDS xni NC_016860.1 3146903 3147658 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); exonuclease IX 3146903..3147658 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248721.1 CDS STMDT12_C30250 NC_016860.1 3147750 3148898 R COG1454 Alcohol dehydrogenase, class IV; L-1,2-propanediol oxidoreductase complement(3147750..3148898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248722.1 CDS STMDT12_C30260 NC_016860.1 3148915 3149562 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase complement(3148915..3149562) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248723.1 CDS STMDT12_C30270 NC_016860.1 3150117 3151433 D COG0738 Fucose permease; L-fucose transporter 3150117..3151433 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248724.1 CDS fucI NC_016860.1 3151465 3153240 D COG2407 L-fucose isomerase and related proteins; L-fucose isomerase 3151465..3153240 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248725.1 CDS STMDT12_C30290 NC_016860.1 3153341 3154759 D COG1070 Sugar (pentulose and hexulose) kinases; L-fuculokinase 3153341..3154759 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248726.1 CDS STMDT12_C30300 NC_016860.1 3154761 3155183 D COG4154 Fucose dissimilation pathway protein FucU; L-fucose mutarotase 3154761..3155183 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248727.1 CDS STMDT12_C30310 NC_016860.1 3155241 3155951 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional activator FucR 3155241..3155951 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248728.1 CDS STMDT12_C30320 NC_016860.1 3156010 3157110 R COG2933 Predicted SAM-dependent methyltransferase; putative RNA 2'-O-ribose methyltransferase complement(3156010..3157110) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248729.1 CDS STMDT12_C30330 NC_016860.1 3157103 3157498 R COG2363 Uncharacterized small membrane protein; hypothetical protein complement(3157103..3157498) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248730.1 CDS STMDT12_C30340 NC_016860.1 3157517 3158434 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator GcvA complement(3157517..3158434) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248731.1 CDS STMDT12_C30350 NC_016860.1 3158781 3159008 R hypothetical protein complement(3158781..3159008) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248732.1 CDS STMDT12_C30360 NC_016860.1 3159201 3160406 D COG0520 Selenocysteine lyase; cysteine sulfinate desulfinase 3159201..3160406 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248733.1 CDS STMDT12_C30370 NC_016860.1 3160406 3160849 D COG2166 SufE protein probably involved in Fe-S center assembly; hypothetical protein 3160406..3160849 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248734.1 CDS STMDT12_C30380 NC_016860.1 3161122 3162036 D COG2962 Predicted permeases; hypothetical protein 3161122..3162036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248735.1 CDS STMDT12_C30390 NC_016860.1 3162088 3162888 R COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; hypothetical protein complement(3162088..3162888) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248736.1 CDS mltA NC_016860.1 3163004 3164101 R COG2821 Membrane-bound lytic murein transglycosylase; murein transglycosylase A complement(3163004..3164101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248737.1 CDS STMDT12_C30410 NC_016860.1 3164601 3165854 R COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3164601..3165854) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248738.1 CDS STMDT12_C30420 NC_016860.1 3166087 3167418 D COG0548 Acetylglutamate kinase; N-acetylglutamate synthase 3166087..3167418 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248739.1 CDS recD NC_016860.1 3167521 3169356 R COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exonuclease V subunit alpha complement(3167521..3169356) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248740.1 CDS recB NC_016860.1 3169353 3172898 R COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); exonuclease V subunit beta complement(3169353..3172898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248741.1 CDS STMDT12_C30450 NC_016860.1 3172891 3175779 R COG0612 Predicted Zn-dependent peptidases; protease 3 complement(3172891..3175779) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248742.1 CDS recC NC_016860.1 3175957 3179328 R COG1330 Exonuclease V gamma subunit; exonuclease V subunit gamma complement(3175957..3179328) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248743.1 CDS STMDT12_C30470 NC_016860.1 3179344 3179664 R hypothetical protein complement(3179344..3179664) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248744.1 CDS STMDT12_C30480 NC_016860.1 3179649 3180056 R hypothetical protein complement(3179649..3180056) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248745.1 CDS STMDT12_C30490 NC_016860.1 3180053 3180616 R hypothetical protein complement(3180053..3180616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248746.1 CDS STMDT12_C30500 NC_016860.1 3180607 3181077 R hypothetical protein complement(3180607..3181077) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248747.1 CDS thyA NC_016860.1 3181262 3182056 R COG0207 Thymidylate synthase; thymidylate synthase complement(3181262..3182056) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248748.1 CDS STMDT12_C30520 NC_016860.1 3182063 3182938 R COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(3182063..3182938) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248749.1 CDS ptsP NC_016860.1 3183154 3185400 R COG3605 Signal transduction protein containing GAF and PtsI domains; PTS system EI protein complement(3183154..3185400) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248750.1 CDS STMDT12_C30540 NC_016860.1 3185413 3185943 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dinucleoside polyphosphate hydrolase complement(3185413..3185943) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248751.1 CDS mutH NC_016860.1 3186626 3187321 D COG3066 DNA mismatch repair protein; DNA mismatch repair protein MutH 3186626..3187321 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248752.1 CDS STMDT12_C30560 NC_016860.1 3187503 3188216 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; protein YegH 3187503..3188216 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248753.1 CDS STMDT12_C30570 NC_016860.1 3188386 3188604 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; hypothetical protein 3188386..3188604 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248754.1 CDS tas NC_016860.1 3188795 3189835 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative aldo-keto reductase 3188795..3189835 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248755.1 CDS STMDT12_C30590 NC_016860.1 3189922 3191124 R COG0477 Permeases of the major facilitator superfamily; lysophospholipid transporter LplT complement(3189922..3191124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248756.1 CDS STMDT12_C30600 NC_016860.1 3191117 3193276 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; bifunctional acyl-[acyl-carrier -protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3191117..3193276) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248757.1 CDS STMDT12_C30610 NC_016860.1 3193869 3194897 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalR 3193869..3194897 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248758.1 CDS STMDT12_C30620 NC_016860.1 3194911 3195930 D COG1609 Transcriptional regulators; putative transcriptional regulator 3194911..3195930 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248759.1 CDS STMDT12_C30630 NC_016860.1 3195940 3197202 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(3195940..3197202) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248760.1 CDS STMDT12_C30640 NC_016860.1 3197320 3198255 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator LysR 3197320..3198255 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248761.1 CDS STMDT12_C30650 NC_016860.1 3198227 3198934 R COG1794 Aspartate racemase; putative racemase complement(3198227..3198934) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248762.1 CDS STMDT12_C30660 NC_016860.1 3199047 3200465 R COG0477 Permeases of the major facilitator superfamily; L-arabinose/proton symport protein complement(3199047..3200465) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248763.1 CDS STMDT12_C30670 NC_016860.1 3200819 3201580 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase complement(3200819..3201580) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248764.1 CDS STMDT12_C30680 NC_016860.1 3201637 3202473 R COG3717 5-keto 4-deoxyuronate isomerase; 5-keto-4-deoxyuronate isomerase complement(3201637..3202473) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248765.1 CDS STMDT12_C30690 NC_016860.1 3202903 3204081 R COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(3202903..3204081) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248766.1 CDS STMDT12_C30700 NC_016860.1 3204204 3205067 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(3204204..3205067) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248767.1 CDS STMDT12_C30710 NC_016860.1 3205171 3205626 D COG4125 Predicted membrane protein; hypothetical protein 3205171..3205626 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248768.1 CDS STMDT12_C30720 NC_016860.1 3205768 3206997 D COG0814 Amino acid permeases; amino acid transport protein 3205768..3206997 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248769.1 CDS STMDT12_C30730 NC_016860.1 3207028 3207300 R COG1937 Uncharacterized protein conserved in bacteria; YohL complement(3207028..3207300) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248770.1 CDS STMDT12_C30740 NC_016860.1 3207422 3208306 D COG2215 ABC-type uncharacterized transport system, permease component; nickel/cobalt efflux protein RcnA 3207422..3208306 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248771.1 CDS STMDT12_C30750 NC_016860.1 3208516 3209274 R putative cytoplasmic protein complement(3208516..3209274) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248772.1 CDS STMDT12_C30760 NC_016860.1 3209261 3209773 R hypothetical protein complement(3209261..3209773) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248773.1 CDS STMDT12_C30770 NC_016860.1 3209917 3210993 R putative outer membrane protein complement(3209917..3210993) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248774.1 CDS STMDT12_C30780 NC_016860.1 3210990 3211733 R COG3121 P pilus assembly protein, chaperone PapD; putative fimbrial chaperone protein complement(3210990..3211733) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248775.1 CDS STMDT12_C30790 NC_016860.1 3211774 3214263 R COG3188 P pilus assembly protein, porin PapC; putative outer membrane usher protein complement(3211774..3214263) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248776.1 CDS STMDT12_C30800 NC_016860.1 3214383 3214967 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like protein complement(3214383..3214967) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248777.1 CDS STMDT12_C30810 NC_016860.1 3215686 3216318 R hypothetical protein complement(3215686..3216318) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248778.1 CDS STMDT12_C30820 NC_016860.1 3216365 3216901 R Ail/OmpX-like protein complement(3216365..3216901) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248779.1 CDS STMDT12_C30830 NC_016860.1 3217581 3218039 R COG1943 Transposase and inactivated derivatives; IS200 transposase complement(3217581..3218039) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248780.1 CDS STMDT12_C30840 NC_016860.1 3218419 3218817 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein complement(3218419..3218817) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248781.1 CDS STMDT12_C30850 NC_016860.1 3218817 3219044 R COG4456 Virulence-associated protein and related proteins; putative cytoplasmic protein complement(3218817..3219044) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248782.1 CDS STMDT12_C30860 NC_016860.1 3219221 3219472 D hypothetical protein 3219221..3219472 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248783.1 CDS STMDT12_C30870 NC_016860.1 3219469 3219564 D hypothetical protein 3219469..3219564 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248784.1 CDS STMDT12_C30880 NC_016860.1 3219618 3219734 D hypothetical protein 3219618..3219734 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248785.1 CDS STMDT12_C30890 NC_016860.1 3219753 3220553 D putative inner membrane protein 3219753..3220553 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248786.1 CDS STMDT12_C30900 NC_016860.1 3220838 3221596 R COG0739 Membrane proteins related to metalloendopeptidases; putative metalloendopeptidase complement(3220838..3221596) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248787.1 CDS STMDT12_C30910 NC_016860.1 3221861 3222406 D COG1443 Isopentenyldiphosphate isomerase; isopentenyl-diphosphate delta-isomerase 3221861..3222406 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248788.1 CDS lysS NC_016860.1 3222482 3223999 R COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase complement(3222482..3223999) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248789.1 CDS prfB NC_016860.1 3224009 3224890 R COG1186 Protein chain release factor B; peptide chain release factor 2 complement(3224009..3224890) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248790.1 CDS STMDT12_C30940 NC_016860.1 3225212 3226945 R COG0608 Single-stranded DNA-specific exonuclease; ssDNA exonuclease RecJ complement(3225212..3226945) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248791.1 CDS STMDT12_C30950 NC_016860.1 3226951 3227664 R COG1651 Protein-disulfide isomerase; thiol:disulfide interchange protein DsbC complement(3226951..3227664) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248792.1 CDS xerD NC_016860.1 3227688 3228584 R COG4974 Site-specific recombinase XerD; site-specific tyrosine recombinase XerD complement(3227688..3228584) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248793.1 CDS STMDT12_C30970 NC_016860.1 3228697 3229218 D COG0716 Flavodoxins; flavodoxin FldB 3228697..3229218 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248794.1 CDS STMDT12_C30980 NC_016860.1 3229271 3229684 R putative inner membrane protein complement(3229271..3229684) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248795.1 CDS STMDT12_C30990 NC_016860.1 3229665 3229931 R COG2938 Uncharacterized conserved protein; hypothetical protein complement(3229665..3229931) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248796.1 CDS STMDT12_C31000 NC_016860.1 3229930 3230166 D COG0456 Acetyltransferases; hypothetical protein 3229930..3230166 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248797.1 CDS STMDT12_C31010 NC_016860.1 3230181 3231161 D COG0354 Predicted aminomethyltransferase related to GcvT; putative global regulator 3230181..3231161 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248798.1 CDS STMDT12_C31020 NC_016860.1 3231277 3231936 R COG1272 Predicted membrane protein, hemolysin III homolog; hemolysin-3 complement(3231277..3231936) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248799.1 CDS STMDT12_C31030 NC_016860.1 3232100 3232411 R COG3097 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3232100..3232411) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248800.1 CDS STMDT12_C31040 NC_016860.1 3232570 3234003 D COG2723 Beta-glucosidase/6-phospho-beta- glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase 3232570..3234003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248801.1 CDS STMDT12_C31050 NC_016860.1 3234051 3234944 R putative outer membrane protein complement(3234051..3234944) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248802.1 CDS STMDT12_C31060 NC_016860.1 3235400 3238273 R COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase complement(3235400..3238273) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248803.1 CDS STMDT12_C31070 NC_016860.1 3238436 3238825 R COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system protein H complement(3238436..3238825) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248804.1 CDS gcvT NC_016860.1 3238851 3239945 R COG0404 Glycine cleavage system T protein (aminomethyltransferase); glycine cleavage system aminomethyltransferase T complement(3238851..3239945) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248805.1 CDS STMDT12_C31090 NC_016860.1 3240400 3241566 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; hypothetical protein complement(3240400..3241566) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248806.1 CDS STMDT12_C31100 NC_016860.1 3241728 3242906 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3241728..3242906) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248807.1 CDS STMDT12_C31110 NC_016860.1 3242903 3244219 R COG0006 Xaa-Pro aminopeptidase; proline aminopeptidase P II complement(3242903..3244219) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248808.1 CDS STMDT12_C31120 NC_016860.1 3244245 3244829 R COG3079 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3244245..3244829) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248809.1 CDS STMDT12_C31130 NC_016860.1 3244990 3245319 D COG3027 Uncharacterized protein conserved in bacteria; Z-ring-associated protein 3244990..3245319 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248810.1 CDS STMDT12_C31140 NC_016860.1 3245613 3246161 D COG0212 5-formyltetrahydrofolate cyclo-ligase; putative ligase 3245613..3246161 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248811.1 CDS STMDT12_C31150 NC_016860.1 3246542 3247774 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase complement(3246542..3247774) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248812.1 CDS STMDT12_C31160 NC_016860.1 3248040 3248699 R COG0120 Ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A complement(3248040..3248699) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248813.1 CDS STMDT12_C31170 NC_016860.1 3248853 3249746 D COG0583 Transcriptional regulator; chromosome replication initiation inhibitor protein 3248853..3249746 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248814.1 CDS STMDT12_C31180 NC_016860.1 3250012 3250758 R COG2968 Uncharacterized conserved protein; hypothetical protein complement(3250012..3250758) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248815.1 CDS STMDT12_C31190 NC_016860.1 3250852 3251487 R COG1279 Lysine efflux permease; arginine exporter protein complement(3250852..3251487) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248816.1 CDS STMDT12_C31200 NC_016860.1 3251687 3252547 R COG0668 Small-conductance mechanosensitive channel; small-conductance mechanosensitive channel complement(3251687..3252547) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248817.1 CDS STMDT12_C31210 NC_016860.1 3252774 3253853 R COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase complement(3252774..3253853) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248818.1 CDS pgk NC_016860.1 3253955 3255118 R COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase complement(3253955..3255118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248819.1 CDS STMDT12_C31230 NC_016860.1 3255140 3256186 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase complement(3255140..3256186) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248820.1 CDS STMDT12_C31240 NC_016860.1 3256560 3256985 D COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif; putative DNA-binding protein 3256560..3256985 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248821.1 CDS STMDT12_C31250 NC_016860.1 3257011 3257589 D two-component sensor kinase LytS 3257011..3257589 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248822.1 CDS STMDT12_C31260 NC_016860.1 3257590 3258297 D COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; hypothetical protein 3257590..3258297 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248823.1 CDS STMDT12_C31270 NC_016860.1 3258279 3258962 D COG1122 ABC-type cobalt transport system, ATPase component; hypothetical protein 3258279..3258962 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248824.1 CDS STMDT12_C31280 NC_016860.1 3258956 3259612 D COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; putative cobalt ABC transporter ATP-binding protein 3258956..3259612 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248825.1 CDS STMDT12_C31290 NC_016860.1 3259656 3261647 R COG0021 Transketolase; transketolase complement(3259656..3261647) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248826.1 CDS STMDT12_C31300 NC_016860.1 3261923 3262681 D COG0501 Zn-dependent protease with chaperone function; peptidase M48 family protein 3261923..3262681 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248827.1 CDS STMDT12_C31310 NC_016860.1 3262782 3263702 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; agmatinase complement(3262782..3263702) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248828.1 CDS STMDT12_C31320 NC_016860.1 3263907 3264797 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative hydrolase/acyltransferase complement(3263907..3264797) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248829.1 CDS STMDT12_C31330 NC_016860.1 3265077 3265550 R COG2731 Beta-galactosidase, beta subunit; putative mannitol dehydrogenase complement(3265077..3265550) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248830.1 CDS STMDT12_C31340 NC_016860.1 3265589 3266596 R COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase complement(3265589..3266596) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248831.1 CDS STMDT12_C31350 NC_016860.1 3266610 3267626 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; hypothetical protein complement(3266610..3267626) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248832.1 CDS STMDT12_C31360 NC_016860.1 3267629 3269101 R COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative mannitol dehydrogenase complement(3267629..3269101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248833.1 CDS STMDT12_C31370 NC_016860.1 3269942 3270046 D hypothetical protein 3269942..3270046 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248834.1 CDS STMDT12_C31380 NC_016860.1 3270361 3271116 R COG2186 Transcriptional regulators; GntR family transcriptional regulator complement(3270361..3271116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248835.1 CDS STMDT12_C31390 NC_016860.1 3271315 3272046 R putative outer membrane lipoprotein complement(3271315..3272046) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248836.1 CDS STMDT12_C31400 NC_016860.1 3272190 3274088 R COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase complement(3272190..3274088) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248837.1 CDS STMDT12_C31410 NC_016860.1 3274175 3274306 R hypothetical protein complement(3274175..3274306) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248838.1 CDS STMDT12_C31420 NC_016860.1 3274601 3274900 R putative inner membrane protein complement(3274601..3274900) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248839.1 CDS STMDT12_C31430 NC_016860.1 3274956 3276110 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3274956..3276110 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248840.1 CDS STMDT12_C31440 NC_016860.1 3276603 3277997 D COG0477 Permeases of the major facilitator superfamily; galactose-proton symporter 3276603..3277997 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248841.1 CDS STMDT12_C31450 NC_016860.1 3278076 3278573 D COG3091 Uncharacterized protein conserved in bacteria; hypothetical protein 3278076..3278573 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248842.1 CDS STMDT12_C31460 NC_016860.1 3278668 3279375 D COG2356 Endonuclease I; endonuclease I 3278668..3279375 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248843.1 CDS rsmE NC_016860.1 3279404 3280183 D COG1385 Uncharacterized protein conserved in bacteria; 16S rRNA methyltransferase RsmE 3279404..3280183 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248844.1 CDS STMDT12_C31480 NC_016860.1 3280203 3281150 D COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); glutathione synthetase 3280203..3281150 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248845.1 CDS STMDT12_C31490 NC_016860.1 3281366 3281929 D COG1678 Putative transcriptional regulator; hypothetical protein 3281366..3281929 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248846.1 CDS STMDT12_C31500 NC_016860.1 3281929 3282345 D COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 3281929..3282345 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248847.1 CDS STMDT12_C31510 NC_016860.1 3282392 3283078 R COG1414 Transcriptional regulator; putative transcriptional regulator complement(3282392..3283078) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248848.1 CDS STMDT12_C31520 NC_016860.1 3283210 3284190 R COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; twitching motility protein complement(3283210..3284190) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248849.1 CDS STMDT12_C31530 NC_016860.1 3284208 3284912 D COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 3284208..3284912 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248850.1 CDS STMDT12_C31540 NC_016860.1 3284931 3285497 D COG0762 Predicted integral membrane protein; YggT family protein 3284931..3285497 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248851.1 CDS STMDT12_C31550 NC_016860.1 3285494 3285784 D COG1872 Uncharacterized conserved protein; hypothetical protein 3285494..3285784 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248852.1 CDS STMDT12_C31560 NC_016860.1 3285792 3286385 D COG0127 Xanthosine triphosphate pyrophosphatase; putative deoxyribonucleotide triphosphate pyrophosphatase 3285792..3286385 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248853.1 CDS STMDT12_C31570 NC_016860.1 3286378 3287514 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 3286378..3287514 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248854.1 CDS STMDT12_C31580 NC_016860.1 3287605 3288612 R hypothetical protein complement(3287605..3288612) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248855.1 CDS ansB NC_016860.1 3288745 3289791 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II complement(3288745..3289791) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248856.1 CDS STMDT12_C31600 NC_016860.1 3289980 3290696 R hypothetical protein complement(3289980..3290696) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248857.1 CDS STMDT12_C31610 NC_016860.1 3290749 3291075 R COG3171 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3290749..3291075) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248858.1 CDS trmB NC_016860.1 3291075 3291794 R COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N7) methyltransferase complement(3291075..3291794) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248859.1 CDS STMDT12_C31630 NC_016860.1 3291949 3293001 D COG1194 A/G-specific DNA glycosylase; adenine DNA glycosylase 3291949..3293001 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248860.1 CDS STMDT12_C31640 NC_016860.1 3293029 3293304 D COG2924 Fe-S cluster protector protein; hypothetical protein 3293029..3293304 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248861.1 CDS mltC NC_016860.1 3293420 3294502 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); murein transglycosylase C 3293420..3294502 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248862.1 CDS nupG NC_016860.1 3294719 3295975 D COG0477 Permeases of the major facilitator superfamily; nucleoside permease NupG 3294719..3295975 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248863.1 CDS STMDT12_C31670 NC_016860.1 3296037 3298172 R COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase complement(3296037..3298172) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248864.1 CDS STMDT12_C31680 NC_016860.1 3298445 3298558 D hypothetical protein 3298445..3298558 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248865.1 CDS STMDT12_C31690 NC_016860.1 3298597 3299304 D COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; protein YqgA 3298597..3299304 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248866.1 CDS STMDT12_C31700 NC_016860.1 3299644 3300024 R COG0346 Lactoylglutathione lyase and related lyases; putative lactoylglutathione lyase complement(3299644..3300024) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248867.1 CDS STMDT12_C31710 NC_016860.1 3300089 3301414 R COG0427 Acetyl-CoA hydrolase; putative hydrolase complement(3300089..3301414) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248868.1 CDS STMDT12_C31720 NC_016860.1 3301439 3301966 R COG2030 Acyl dehydratase; putative monoamine oxidase complement(3301439..3301966) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248869.1 CDS STMDT12_C31730 NC_016860.1 3301990 3302832 R COG2301 Citrate lyase beta subunit; HpcH/HpaI aldolase/citrate lyase family protein complement(3301990..3302832) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248870.1 CDS STMDT12_C31740 NC_016860.1 3302924 3303802 D COG0583 Transcriptional regulator; putative LysR-family transcriptional regulator 3302924..3303802 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248871.1 CDS STMDT12_C31750 NC_016860.1 3303850 3305589 R COG3119 Arylsulfatase A and related enzymes; arylsulfatase complement(3303850..3305589) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248872.1 CDS STMDT12_C31760 NC_016860.1 3305658 3306842 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase-activating protein AtsB complement(3305658..3306842) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248873.1 CDS STMDT12_C31770 NC_016860.1 3307354 3308037 D COG2771 DNA-binding HTH domain-containing proteins; LysR family transcriptional regulator 3307354..3308037 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248874.1 CDS STMDT12_C31780 NC_016860.1 3308141 3308665 R putative cytoplasmic protein complement(3308141..3308665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248875.1 CDS STMDT12_C31790 NC_016860.1 3308676 3310175 R COG0531 Amino acid transporters; amino acid transporter complement(3308676..3310175) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248876.1 CDS STMDT12_C31800 NC_016860.1 3310168 3310311 R COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein complement(3310168..3310311) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248877.1 CDS STMDT12_C31810 NC_016860.1 3310384 3310758 R COG3450 Predicted enzyme of the cupin superfamily; putative cytoplasmic protein complement(3310384..3310758) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248878.1 CDS STMDT12_C31820 NC_016860.1 3310773 3312074 R COG0665 Glycine/D-amino acid oxidases (deaminating); putative oxidoreductase complement(3310773..3312074) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248879.1 CDS STMDT12_C31830 NC_016860.1 3312236 3313720 D COG1012 NAD-dependent aldehyde dehydrogenases; phenylacetaldehyde dehydrogenase 3312236..3313720 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248880.1 CDS iraD NC_016860.1 3313856 3314236 R COG3518 Uncharacterized protein conserved in bacteria; DNA replication/recombination/repair protein complement(3313856..3314236) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248881.1 CDS STMDT12_C31850 NC_016860.1 3314236 3314721 R COG3157 Hemolysin-coregulated protein (uncharacterized); putative cytoplasmic protein complement(3314236..3314721) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248882.1 CDS STMDT12_C31860 NC_016860.1 3314720 3314875 D hypothetical protein 3314720..3314875 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248883.1 CDS STMDT12_C31870 NC_016860.1 3315447 3316370 R COG0726 Predicted xylanase/chitin deacetylase; putative xylanase/chitin deacetylase complement(3315447..3316370) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248884.1 CDS STMDT12_C31880 NC_016860.1 3316409 3317287 R COG0388 Predicted amidohydrolase; putative amidohydrolase complement(3316409..3317287) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248885.1 CDS STMDT12_C31890 NC_016860.1 3317683 3318987 R COG0477 Permeases of the major facilitator superfamily; hexuronate transporter complement(3317683..3318987) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248886.1 CDS STMDT12_C31900 NC_016860.1 3319392 3320576 D COG1312 D-mannonate dehydratase; mannonate dehydratase 3319392..3320576 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248887.1 CDS STMDT12_C31910 NC_016860.1 3320687 3322159 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 3320687..3322159 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248888.1 CDS STMDT12_C31920 NC_016860.1 3322171 3323583 D COG1904 Glucuronate isomerase; glucuronate isomerase 3322171..3323583 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248889.1 CDS STMDT12_C31930 NC_016860.1 3323883 3324941 R COG0840 Methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis protein complement(3323883..3324941) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248890.1 CDS STMDT12_C31940 NC_016860.1 3325611 3327467 R COG0754 Glutathionylspermidine synthase; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3325611..3327467) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248891.1 CDS STMDT12_C31950 NC_016860.1 3327694 3328560 D COG0625 Glutathione S-transferase; putative glutathione S-transferase 3327694..3328560 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248892.1 CDS STMDT12_C31960 NC_016860.1 3328628 3329338 R COG0725 ABC-type molybdate transport system, periplasmic component; molybdate ABC transporter substrate binding protein complement(3328628..3329338) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248893.1 CDS STMDT12_C31970 NC_016860.1 3329338 3330390 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; periplasmic binding protein complement(3329338..3330390) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248894.1 CDS STMDT12_C31980 NC_016860.1 3330466 3330714 R COG0298 Hydrogenase maturation factor; hydrogenase 2 accessory protein HypG complement(3330466..3330714) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248895.1 CDS STMDT12_C31990 NC_016860.1 3330742 3331083 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HybF complement(3330742..3331083) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248896.1 CDS STMDT12_C32000 NC_016860.1 3331076 3331564 R hydrogenase 2-specific chaperone complement(3331076..3331564) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248897.1 CDS hybD NC_016860.1 3331557 3332051 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 2 maturation endopeptidase complement(3331557..3332051) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248898.1 CDS STMDT12_C32020 NC_016860.1 3332051 3333754 R COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 2 large subunit complement(3332051..3333754) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248899.1 CDS STMDT12_C32030 NC_016860.1 3333751 3334929 R COG5557 Polysulphide reductase; putative hydrogenase 2 b cytochrome subunit complement(3333751..3334929) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248900.1 CDS STMDT12_C32040 NC_016860.1 3334919 3335905 R COG0437 Fe-S-cluster-containing hydrogenase components 1; hydrogenase 2 protein HybA complement(3334919..3335905) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248901.1 CDS STMDT12_C32050 NC_016860.1 3335908 3337026 R COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 2 small subunit complement(3335908..3337026) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248902.1 CDS STMDT12_C32060 NC_016860.1 3337216 3337503 R hypothetical protein complement(3337216..3337503) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248903.1 CDS STMDT12_C32070 NC_016860.1 3337588 3339231 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3337588..3339231) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248904.1 CDS STMDT12_C32080 NC_016860.1 3339538 3340032 R COG2862 Predicted membrane protein; hypothetical protein complement(3339538..3340032) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248905.1 CDS STMDT12_C32090 NC_016860.1 3340312 3340815 R hypothetical protein complement(3340312..3340815) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248906.1 CDS STMDT12_C32100 NC_016860.1 3340919 3341329 D hypothetical protein 3340919..3341329 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248907.1 CDS STMDT12_C32110 NC_016860.1 3341316 3341720 D putative cytoplasmic protein 3341316..3341720 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248908.1 CDS STMDT12_C32120 NC_016860.1 3341844 3342728 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 3341844..3342728 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248909.1 CDS STMDT12_C32130 NC_016860.1 3342841 3343266 R COG0848 Biopolymer transport protein; biopolymer transport protein ExbD complement(3342841..3343266) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248910.1 CDS STMDT12_C32140 NC_016860.1 3343273 3344007 R COG0811 Biopolymer transport proteins; biopolymer transport protein ExbB complement(3343273..3344007) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248911.1 CDS STMDT12_C32150 NC_016860.1 3344000 3344137 R hypothetical protein complement(3344000..3344137) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248912.1 CDS STMDT12_C32160 NC_016860.1 3344259 3345446 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase 3344259..3345446 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248913.1 CDS STMDT12_C32170 NC_016860.1 3345586 3346245 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 3345586..3346245 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248914.1 CDS STMDT12_C32180 NC_016860.1 3346309 3347226 R COG2207 AraC-type DNA-binding domain-containing proteins; putative transcriptional regulator complement(3346309..3347226) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248915.1 CDS STMDT12_C32190 NC_016860.1 3347401 3348564 D COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; putative alcohol dehydrogenase 3347401..3348564 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248916.1 CDS dkgA NC_016860.1 3348670 3349497 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase A 3348670..3349497 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248917.1 CDS STMDT12_C32210 NC_016860.1 3349663 3351147 D COG0471 Di- and tricarboxylate transporters; putative cation transporter 3349663..3351147 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248918.1 CDS STMDT12_C32220 NC_016860.1 3351192 3351647 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; hypothetical protein 3351192..3351647 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248919.1 CDS STMDT12_C32230 NC_016860.1 3351805 3351999 R hypothetical protein complement(3351805..3351999) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248920.1 CDS STMDT12_C32240 NC_016860.1 3352202 3354373 R COG1032 Fe-S oxidoreductase; hypothetical protein complement(3352202..3354373) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248921.1 CDS STMDT12_C32250 NC_016860.1 3354861 3355844 D COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; trap dicarboxylate transporter, DctP subunit 3354861..3355844 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248922.1 CDS STMDT12_C32260 NC_016860.1 3355886 3356368 D COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; trap dicarboxylate transporter, DctQ subunit 3355886..3356368 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248923.1 CDS STMDT12_C32270 NC_016860.1 3356379 3357686 D COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; putative transport protein 3356379..3357686 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248924.1 CDS STMDT12_C32280 NC_016860.1 3357731 3359143 R COG2132 Putative multicopper oxidases; repressor protein for FtsI complement(3357731..3359143) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248925.1 CDS STMDT12_C32290 NC_016860.1 3359217 3359954 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3359217..3359954) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248926.1 CDS STMDT12_C32300 NC_016860.1 3360211 3362469 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA topoisomerase IV subunit A complement(3360211..3362469) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248927.1 CDS STMDT12_C32310 NC_016860.1 3362580 3363446 R COG2207 AraC-type DNA-binding domain-containing proteins; putative regulatory protein complement(3362580..3363446) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248928.1 CDS STMDT12_C32320 NC_016860.1 3363518 3363910 R COG3111 Uncharacterized conserved protein; hypothetical protein complement(3363518..3363910) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248929.1 CDS STMDT12_C32330 NC_016860.1 3364062 3364721 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator QseB 3364062..3364721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248930.1 CDS STMDT12_C32340 NC_016860.1 3364718 3366067 D COG0642 Signal transduction histidine kinase; sensor kinase QseC 3364718..3366067 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248931.1 CDS STMDT12_C32350 NC_016860.1 3366174 3366755 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NADPH-specific quinone oxidoreductase 3366174..3366755 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248932.1 CDS STMDT12_C32360 NC_016860.1 3366787 3367101 D COG1359 Uncharacterized conserved protein; protein YgiN 3366787..3367101 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248933.1 CDS STMDT12_C32370 NC_016860.1 3367226 3369118 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA topoisomerase IV subunit B complement(3367226..3369118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248934.1 CDS STMDT12_C32380 NC_016860.1 3369146 3369727 R COG3150 Predicted esterase; esterase YqiA complement(3369146..3369727) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248935.1 CDS STMDT12_C32390 NC_016860.1 3369727 3370554 R COG1409 Predicted phosphohydrolases; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3369727..3370554) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248936.1 CDS STMDT12_C32400 NC_016860.1 3370579 3371001 R COG3151 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3370579..3371001) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248937.1 CDS nudF NC_016860.1 3370998 3371630 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase NudF complement(3370998..3371630) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248938.1 CDS tolC NC_016860.1 3371837 3373306 D COG1538 Outer membrane protein; type I secretion outer membrane protein 3371837..3373306 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248939.1 CDS STMDT12_C32430 NC_016860.1 3373519 3374190 D COG5463 Predicted integral membrane protein; hypothetical protein 3373519..3374190 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248940.1 CDS STMDT12_C32440 NC_016860.1 3374196 3375359 D COG0754 Glutathionylspermidine synthase; glutathionylspermidine synthase 3374196..3375359 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248941.1 CDS STMDT12_C32450 NC_016860.1 3375421 3376209 R COG3384 Uncharacterized conserved protein; hypothetical protein complement(3375421..3376209) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248942.1 CDS STMDT12_C32460 NC_016860.1 3376350 3377123 D COG0428 Predicted divalent heavy-metal cations transporter; zinc transporter ZupT 3376350..3377123 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248943.1 CDS STMDT12_C32470 NC_016860.1 3377190 3377366 R hypothetical protein complement(3377190..3377366) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248944.1 CDS STMDT12_C32480 NC_016860.1 3377766 3378731 D putative frameshift mutation; putative arylsulfate sulfotransferase 3377766..3378731 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248945.1 CDS STMDT12_C32490 NC_016860.1 3378767 3379561 D putative frameshift mutation; putative arylsulfate sulfotransferase 3378767..3379561 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248946.1 CDS STMDT12_C32500 NC_016860.1 3379581 3380252 D COG0526 Thiol-disulfide isomerase and thioredoxins; disulfide isomerase 3379581..3380252 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248947.1 CDS STMDT12_C32510 NC_016860.1 3380267 3380944 D COG1495 Disulfide bond formation protein DsbB; putative disulfide oxidoreductase 3380267..3380944 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248948.1 CDS STMDT12_C32520 NC_016860.1 3381047 3381148 D hypothetical protein 3381047..3381148 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248949.1 CDS ribB NC_016860.1 3381115 3381768 R COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3381115..3381768) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248950.1 CDS STMDT12_C32540 NC_016860.1 3382205 3382504 D COG2960 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3382205..3382504 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248951.1 CDS STMDT12_C32550 NC_016860.1 3382578 3382787 R glycogen synthase GlgS complement(3382578..3382787) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248952.1 CDS STMDT12_C32560 NC_016860.1 3383045 3383665 D inner membrane protein YqiJ 3383045..3383665 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248953.1 CDS STMDT12_C32570 NC_016860.1 3383684 3385363 D COG2268 Uncharacterized protein conserved in bacteria; inner membrane protein YqiK 3383684..3385363 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248954.1 CDS STMDT12_C32580 NC_016860.1 3385823 3387256 R COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3385823..3387256) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248955.1 CDS STMDT12_C32590 NC_016860.1 3387304 3390147 R COG1391 Glutamine synthetase adenylyltransferase; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3387304..3390147) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248956.1 CDS STMDT12_C32600 NC_016860.1 3390265 3391566 R COG3025 Uncharacterized conserved protein; adenylate cyclase complement(3390265..3391566) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248957.1 CDS STMDT12_C32610 NC_016860.1 3391808 3392422 D COG3103 SH3 domain protein; putative signal transduction protein 3391808..3392422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248958.1 CDS cca NC_016860.1 3392485 3393726 D COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3392485..3393726 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248959.1 CDS STMDT12_C32630 NC_016860.1 3393831 3394652 R COG1968 Uncharacterized bacitracin resistance protein; undecaprenyl pyrophosphate phosphatase complement(3393831..3394652) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248960.1 CDS folB NC_016860.1 3394750 3395109 R COG1539 Dihydroneopterin aldolase; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3394750..3395109) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248961.1 CDS STMDT12_C32650 NC_016860.1 3395216 3395827 D COG0344 Predicted membrane protein; putative glycerol-3-phosphate acyltransferase PlsY 3395216..3395827 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248962.1 CDS STMDT12_C32660 NC_016860.1 3395902 3396174 D hypothetical protein 3395902..3396174 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248963.1 CDS STMDT12_C32670 NC_016860.1 3396078 3397091 R COG0533 Metal-dependent proteases with possible chaperone activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3396078..3397091) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248964.1 CDS rpsU NC_016860.1 3397319 3397534 D COG0828 Ribosomal protein S21; 30S ribosomal protein S21 3397319..3397534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248965.1 CDS dnaG NC_016860.1 3397770 3399515 D COG0358 DNA primase (bacterial type); DNA primase 3397770..3399515 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248966.1 CDS STMDT12_C32700 NC_016860.1 3399665 3401512 D COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD 3399665..3401512 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248967.1 CDS STMDT12_C32710 NC_016860.1 3401636 3402142 R COG3663 G:T/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase complement(3401636..3402142) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248968.1 CDS STMDT12_C32720 NC_016860.1 3402423 3403190 R COG2375 Siderophore-interacting protein; siderophore-interacting protein complement(3402423..3403190) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248969.1 CDS STMDT12_C32730 NC_016860.1 3403425 3404069 D COG1695 Predicted transcriptional regulators; putative transcriptional regulator 3403425..3404069 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248970.1 CDS STMDT12_C32740 NC_016860.1 3404066 3405631 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein II complement(3404066..3405631) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248971.1 CDS STMDT12_C32750 NC_016860.1 3406019 3407539 R COG2202 FOG: PAS/PAC domain; aerotaxis receptor complement(3406019..3407539) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248972.1 CDS STMDT12_C32760 NC_016860.1 3408059 3409348 D COG4992 Ornithine/acetylornithine aminotransferase; putrescine--2-oxoglutarate aminotransferase 3408059..3409348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248973.1 CDS STMDT12_C32770 NC_016860.1 3409519 3411537 D COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; 2,4-dienoyl-CoA reductase 3409519..3411537 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248974.1 CDS STMDT12_C32780 NC_016860.1 3411618 3412754 R COG2813 16S RNA G1207 methylase RsmC; hypothetical protein complement(3411618..3412754) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248975.1 CDS STMDT12_C32790 NC_016860.1 3412840 3413337 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 3412840..3413337 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248976.1 CDS STMDT12_C32800 NC_016860.1 3413489 3414181 D COG2949 Uncharacterized membrane protein; hypothetical protein 3413489..3414181 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248977.1 CDS STMDT12_C32810 NC_016860.1 3414270 3415268 D COG0673 Predicted dehydrogenases and related proteins; putative oxidoresuctase 3414270..3415268 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248978.1 CDS STMDT12_C32820 NC_016860.1 3415541 3416509 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative drug efflux protein 3415541..3416509 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248979.1 CDS sstT NC_016860.1 3416764 3418008 D COG3633 Na+/serine symporter; serine/threonine transporter SstT 3416764..3418008 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248980.1 CDS STMDT12_C32840 NC_016860.1 3418458 3419120 D COG0586 Uncharacterized membrane-associated protein; inner membrane protein YqjA 3418458..3419120 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248981.1 CDS STMDT12_C32850 NC_016860.1 3419124 3419507 D hypothetical protein 3419124..3419507 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248982.1 CDS STMDT12_C32860 NC_016860.1 3419652 3420020 D hypothetical protein 3419652..3420020 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248983.1 CDS STMDT12_C32870 NC_016860.1 3420062 3420367 D hypothetical protein 3420062..3420367 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248984.1 CDS STMDT12_C32880 NC_016860.1 3420370 3420768 D hypothetical protein 3420370..3420768 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248985.1 CDS STMDT12_C32890 NC_016860.1 3420765 3421064 D hypothetical protein 3420765..3421064 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248986.1 CDS STMDT12_C32900 NC_016860.1 3421209 3421694 D COG2259 Predicted membrane protein; putative inner membrane protein YqjF 3421209..3421694 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248987.1 CDS STMDT12_C32910 NC_016860.1 3421762 3422748 D COG0435 Predicted glutathione S-transferase; putative glutathione S-transferase 3421762..3422748 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248988.1 CDS STMDT12_C32920 NC_016860.1 3422872 3423237 D COG3152 Predicted membrane protein; inner membrane protein YhaH 3422872..3423237 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248989.1 CDS STMDT12_C32930 NC_016860.1 3423276 3424172 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(3423276..3424172) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248990.1 CDS STMDT12_C32940 NC_016860.1 3424277 3424978 D COG1741 Pirin-related protein; putative pirin-related protein 3424277..3424978 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248991.1 CDS STMDT12_C32950 NC_016860.1 3425002 3425166 D hypothetical protein 3425002..3425166 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248992.1 CDS STMDT12_C32960 NC_016860.1 3425279 3426589 R COG3681 Uncharacterized conserved protein; putative inner membrane protein complement(3425279..3426589) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248993.1 CDS STMDT12_C32970 NC_016860.1 3426615 3427946 R COG0814 Amino acid permeases; inner membrane transport protein YhaO complement(3426615..3427946) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248994.1 CDS STMDT12_C32980 NC_016860.1 3428262 3429626 R COG1760 L-serine deaminase; L-serine dehydratase III complement(3428262..3429626) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248995.1 CDS STMDT12_C32990 NC_016860.1 3429696 3431990 R COG1882 Pyruvate-formate lyase; formate acetyltransferase complement(3429696..3431990) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248996.1 CDS STMDT12_C33000 NC_016860.1 3432024 3433232 R COG0282 Acetate kinase; propionate/acetate kinase complement(3432024..3433232) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248997.1 CDS tdcC NC_016860.1 3433298 3434629 R COG0814 Amino acid permeases; threonine/serine transporter TdcC complement(3433298..3434629) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248998.1 CDS tdcB NC_016860.1 3434650 3435639 R COG1171 Threonine dehydratase; threonine dehydratase complement(3434650..3435639) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005248999.1 CDS STMDT12_C33030 NC_016860.1 3435737 3436675 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator TdcA complement(3435737..3436675) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249000.1 CDS STMDT12_C33040 NC_016860.1 3438474 3439619 R COG1929 Glycerate kinase; glycerate kinase complement(3438474..3439619) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249001.1 CDS garR NC_016860.1 3439717 3440607 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase complement(3439717..3440607) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249002.1 CDS STMDT12_C33060 NC_016860.1 3440633 3441403 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3440633..3441403) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249003.1 CDS STMDT12_C33070 NC_016860.1 3441933 3443504 D COG2721 Altronate dehydratase; D-galactarate dehydratase 3441933..3443504 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249004.1 CDS STMDT12_C33080 NC_016860.1 3443744 3444691 R COG0524 Sugar kinases, ribokinase family; putative carbohydrate kinase complement(3443744..3444691) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249005.1 CDS STMDT12_C33090 NC_016860.1 3444702 3445535 R COG1349 Transcriptional regulators of sugar metabolism; hypothetical protein complement(3444702..3445535) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249006.1 CDS gatY NC_016860.1 3445869 3446723 D COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 3445869..3446723 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249007.1 CDS STMDT12_C33110 NC_016860.1 3446734 3447648 D COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); hypothetical protein 3446734..3447648 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249008.1 CDS STMDT12_C33120 NC_016860.1 3447675 3449102 D COG1445 Phosphotransferase system fructose-specific component IIB; hypothetical protein 3447675..3449102 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249009.1 CDS STMDT12_C33130 NC_016860.1 3449089 3449895 D COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; mannitol/fructose-specific PTS system IIA protein 3449089..3449895 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249010.1 CDS STMDT12_C33140 NC_016860.1 3450093 3451364 D COG4573 Predicted tagatose 6-phosphate kinase; hypothetical protein 3450093..3451364 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249011.1 CDS STMDT12_C33150 NC_016860.1 3451379 3451843 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); galactitol-specific PTS system IIA protein 3451379..3451843 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249012.1 CDS STMDT12_C33160 NC_016860.1 3451874 3452158 D COG3414 Phosphotransferase system, galactitol-specific IIB component; galactitol-specific PTS system IIA protein 3451874..3452158 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249013.1 CDS STMDT12_C33170 NC_016860.1 3452162 3453535 D COG3775 Phosphotransferase system, galactitol-specific IIC component; galactitol-specific PTS system IIC protein 3452162..3453535 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249014.1 CDS STMDT12_C33180 NC_016860.1 3453579 3454622 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; galactitol-1-phosphate dehydrogenase 3453579..3454622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249015.1 CDS STMDT12_C33190 NC_016860.1 3454733 3455506 D COG1349 Transcriptional regulators of sugar metabolism; galactitol utilization operon repressor 3454733..3455506 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249016.1 CDS STMDT12_C33200 NC_016860.1 3455664 3456527 R COG0313 Predicted methyltransferases; hypothetical protein complement(3455664..3456527) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249017.1 CDS STMDT12_C33210 NC_016860.1 3456591 3458633 D COG3107 Putative lipoprotein; putative transglycosylase 3456591..3458633 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249018.1 CDS STMDT12_C33220 NC_016860.1 3458591 3458986 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 3458591..3458986 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249019.1 CDS STMDT12_C33230 NC_016860.1 3459008 3459598 D COG0279 Phosphoheptose isomerase; DnaA initiator-associating protein DiaA 3459008..3459598 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249020.1 CDS STMDT12_C33240 NC_016860.1 3459608 3460183 D COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein 3459608..3460183 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249021.1 CDS STMDT12_C33250 NC_016860.1 3460250 3460885 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; putative nucleoside-diphosphate-sugar epimerase complement(3460250..3460885) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249022.1 CDS STMDT12_C33260 NC_016860.1 3461016 3461534 D COG0693 Putative intracellular protease/amidase; intracellular protease 1 3461016..3461534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249023.1 CDS STMDT12_C33270 NC_016860.1 3461514 3461957 R COG3787 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3461514..3461957) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249024.1 CDS STMDT12_C33280 NC_016860.1 3461995 3462312 D COG2827 Predicted endonuclease containing a URI domain; GIY-YIG nuclease superfamily protein 3461995..3462312 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249025.1 CDS STMDT12_C33290 NC_016860.1 3462299 3462802 R COG3153 Predicted acetyltransferase; putative acetyltransferase complement(3462299..3462802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249026.1 CDS STMDT12_C33300 NC_016860.1 3462796 3463320 R COG3154 Putative lipid carrier protein; sterol-binding protein complement(3462796..3463320) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249027.1 CDS STMDT12_C33310 NC_016860.1 3463537 3464532 D COG0826 Collagenase and related proteases; putative protease 3463537..3464532 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249028.1 CDS STMDT12_C33320 NC_016860.1 3464541 3465419 D COG0826 Collagenase and related proteases; peptidase U32 family protein 3464541..3465419 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249029.1 CDS STMDT12_C33330 NC_016860.1 3465597 3466604 D COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; hypothetical protein 3465597..3466604 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249030.1 CDS STMDT12_C33340 NC_016860.1 3466582 3467301 R COG3034 Uncharacterized protein conserved in bacteria; putative inner membrane protein complement(3466582..3467301) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249031.1 CDS STMDT12_C33350 NC_016860.1 3467460 3467990 D putative cytoplasmic protein 3467460..3467990 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249032.1 CDS STMDT12_C33360 NC_016860.1 3468051 3469295 R COG0814 Amino acid permeases; tryptophan permease complement(3468051..3469295) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249033.1 CDS STMDT12_C33370 NC_016860.1 3469449 3471338 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DeaD complement(3469449..3471338) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249034.1 CDS STMDT12_C33380 NC_016860.1 3471517 3472401 R COG4785 Lipoprotein NlpI, contains TPR repeats; lipoprotein NlpI complement(3471517..3472401) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249035.1 CDS STMDT12_C33390 NC_016860.1 3472511 3474676 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(3472511..3474676) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249036.1 CDS rpsO NC_016860.1 3474888 3475157 R COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 complement(3474888..3475157) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249037.1 CDS truB NC_016860.1 3475308 3476252 R COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B complement(3475308..3476252) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249038.1 CDS rbfA NC_016860.1 3476252 3476653 R COG0858 Ribosome-binding factor A; ribosome-binding factor A complement(3476252..3476653) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249039.1 CDS infB NC_016860.1 3476874 3479552 R COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 complement(3476874..3479552) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249040.1 CDS nusA NC_016860.1 3479577 3481079 R COG0195 Transcription elongation factor; transcription elongation factor NusA complement(3479577..3481079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249041.1 CDS STMDT12_C33450 NC_016860.1 3481107 3481529 R COG0779 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3481107..3481529) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249042.1 CDS STMDT12_C33460 NC_016860.1 3482187 3483530 D COG0137 Argininosuccinate synthase; argininosuccinate synthase 3482187..3483530 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249043.1 CDS STMDT12_C33470 NC_016860.1 3483616 3484680 R COG3878 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3483616..3484680) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249044.1 CDS secG NC_016860.1 3485116 3485448 R COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3485116..3485448) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249045.1 CDS glmM NC_016860.1 3485671 3487008 R COG1109 Phosphomannomutase; phosphoglucosamine mutase complement(3485671..3487008) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249046.1 CDS folP NC_016860.1 3487001 3487849 R COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase complement(3487001..3487849) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249047.1 CDS hflB NC_016860.1 3487954 3489888 R COG0465 ATP-dependent Zn proteases; ATP-dependent metalloprotease complement(3487954..3489888) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249048.1 CDS rrmJ NC_016860.1 3489992 3490618 R COG0293 23S rRNA methylase; 23S rRNA methyltransferase J complement(3489992..3490618) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249049.1 CDS STMDT12_C33530 NC_016860.1 3490706 3491038 D COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; RNA-binding protein YhbY 3490706..3491038 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249050.1 CDS greA NC_016860.1 3491194 3491670 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(3491194..3491670) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249051.1 CDS STMDT12_C33550 NC_016860.1 3491724 3491852 R hypothetical protein complement(3491724..3491852) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249052.1 CDS STMDT12_C33560 NC_016860.1 3491918 3493351 D COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase 3491918..3493351 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249053.1 CDS STMDT12_C33570 NC_016860.1 3493361 3493486 D hypothetical protein 3493361..3493486 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249054.1 CDS obgE NC_016860.1 3493483 3494655 R COG0536 Predicted GTPase; GTPase ObgE complement(3493483..3494655) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249057.1 CDS rpmA NC_016860.1 3495765 3496022 R COG0211 Ribosomal protein L27; 50S ribosomal protein L27 complement(3495765..3496022) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249058.1 CDS rplU NC_016860.1 3496042 3496353 R COG0261 Ribosomal protein L21; 50S ribosomal protein L21 complement(3496042..3496353) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249059.1 CDS STMDT12_C33630 NC_016860.1 3496470 3497582 D COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl diphosphate synthase 3496470..3497582 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249060.1 CDS STMDT12_C33640 NC_016860.1 3497814 3498101 D COG3423 Predicted transcriptional regulator; DNA-binding transcriptional regulator Nlp 3497814..3498101 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249061.1 CDS STMDT12_C33650 NC_016860.1 3498159 3499418 R COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3498159..3499418) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249062.1 CDS STMDT12_C33660 NC_016860.1 3499472 3499765 R COG5007 Predicted transcriptional regulator, BolA superfamily; hypothetical protein complement(3499472..3499765) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249063.1 CDS STMDT12_C33670 NC_016860.1 3499914 3500210 R COG3113 Predicted NTP binding protein (contains STAS domain); putative anti-sigma factor antagonist complement(3499914..3500210) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249064.1 CDS STMDT12_C33680 NC_016860.1 3500210 3500845 R COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; toluene tolerance protein Ttg2D complement(3500210..3500845) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249065.1 CDS STMDT12_C33690 NC_016860.1 3500864 3501415 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; Mce family protein complement(3500864..3501415) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249066.1 CDS STMDT12_C33700 NC_016860.1 3501420 3502202 R COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; toluene ABC transporter permease protein complement(3501420..3502202) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249067.1 CDS STMDT12_C33710 NC_016860.1 3502210 3503022 R COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; putative ABC transporter ATP-binding protein YrbF complement(3502210..3503022) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249068.1 CDS STMDT12_C33720 NC_016860.1 3503235 3504212 D COG0530 Ca2+/Na+ antiporter; putative calcium/sodium:proton antiporter 3503235..3504212 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249069.1 CDS STMDT12_C33730 NC_016860.1 3504226 3505212 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3504226..3505212 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249070.1 CDS STMDT12_C33740 NC_016860.1 3505233 3505799 D COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3505233..3505799 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249071.1 CDS STMDT12_C33750 NC_016860.1 3505796 3506371 D COG3117 Uncharacterized protein conserved in bacteria; hypothetical protein 3505796..3506371 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249072.1 CDS STMDT12_C33760 NC_016860.1 3506340 3506894 D COG1934 Uncharacterized protein conserved in bacteria; lipopolysaccharide ABC transporter substrate binding protein LptA 3506340..3506894 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249073.1 CDS STMDT12_C33770 NC_016860.1 3506901 3507626 D COG1137 ABC-type (unclassified) transport system, ATPase component; putative ABC transporter ATP-binding protein YhbG 3506901..3507626 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249074.1 CDS STMDT12_C33780 NC_016860.1 3507674 3509107 D COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 3507674..3509107 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249075.1 CDS STMDT12_C33790 NC_016860.1 3509130 3509417 D COG1544 Ribosome-associated protein Y (PSrp-1); putative sigma-54 modulation protein 3509130..3509417 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249076.1 CDS STMDT12_C33800 NC_016860.1 3509535 3510026 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 3509535..3510026 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249077.1 CDS STMDT12_C33810 NC_016860.1 3510072 3510926 D COG1660 Predicted P-loop-containing kinase; hypothetical protein 3510072..3510926 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249078.1 CDS ptsO NC_016860.1 3510923 3511195 D COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein NPr 3510923..3511195 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249079.1 CDS STMDT12_C33830 NC_016860.1 3511444 3512076 D hypothetical protein 3511444..3512076 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249080.1 CDS mtgA NC_016860.1 3512151 3512879 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); monofunctional biosynthetic peptidoglycan transglycosylase complement(3512151..3512879) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249081.1 CDS STMDT12_C33850 NC_016860.1 3512876 3513529 R COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; enhancing lycopene biosynthesis protein 2 complement(3512876..3513529) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249082.1 CDS STMDT12_C33860 NC_016860.1 3513756 3516092 R COG0642 Signal transduction histidine kinase; aerobic respiration control sensor protein ArcB complement(3513756..3516092) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249083.1 CDS STMDT12_C33870 NC_016860.1 3516186 3517115 R COG1242 Predicted Fe-S oxidoreductase; putative Fe-S oxidoreductase complement(3516186..3517115) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249084.1 CDS gltB NC_016860.1 3517787 3522247 D COG0067 Glutamate synthase domain 1; glutamate synthase subunit alpha 3517787..3522247 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249085.1 CDS gltD NC_016860.1 3522257 3523675 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; glutamate synthase subunit beta 3522257..3523675 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249086.1 CDS STMDT12_C33900 NC_016860.1 3523882 3524985 D COG4804 Uncharacterized conserved protein; putative cytoplasmic protein 3523882..3524985 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249087.1 CDS codB NC_016860.1 3525102 3526355 D COG1457 Purine-cytosine permease and related proteins; cytosine permease 3525102..3526355 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249088.1 CDS STMDT12_C33920 NC_016860.1 3526342 3527622 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; cytosine deaminase 3526342..3527622 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249089.1 CDS STMDT12_C33930 NC_016860.1 3527705 3528172 R COG2731 Beta-galactosidase, beta subunit; hypothetical protein complement(3527705..3528172) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249090.1 CDS STMDT12_C33940 NC_016860.1 3528169 3529044 R COG1940 Transcriptional regulator/sugar kinase; N-acetylmannosamine kinase complement(3528169..3529044) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249091.1 CDS STMDT12_C33950 NC_016860.1 3529041 3529730 R COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase complement(3529041..3529730) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249092.1 CDS STMDT12_C33960 NC_016860.1 3529777 3531267 R COG0477 Permeases of the major facilitator superfamily; putative sialic acid transporter complement(3529777..3531267) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249093.1 CDS STMDT12_C33970 NC_016860.1 3531383 3532276 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; N-acetylneuraminate lyase complement(3531383..3532276) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249094.1 CDS STMDT12_C33980 NC_016860.1 3532411 3533193 R COG2186 Transcriptional regulators; transcriptional regulator NanR complement(3532411..3533193) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249095.1 CDS STMDT12_C33990 NC_016860.1 3533311 3533811 R COG2969 Stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(3533311..3533811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249096.1 CDS sspA NC_016860.1 3533817 3534455 R COG0625 Glutathione S-transferase; stringent starvation protein A complement(3533817..3534455) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249097.1 CDS STMDT12_C34010 NC_016860.1 3534718 3535512 R putative cytoplasmic protein complement(3534718..3535512) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249098.1 CDS rpsI NC_016860.1 3535670 3536062 R COG0103 Ribosomal protein S9; 30S ribosomal protein S9 complement(3535670..3536062) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249099.1 CDS rplM NC_016860.1 3536078 3536506 R COG0102 Ribosomal protein L13; 50S ribosomal protein L13 complement(3536078..3536506) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249100.1 CDS STMDT12_C34040 NC_016860.1 3536809 3537933 R COG1485 Predicted ATPase; putative ATPase complement(3536809..3537933) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249101.1 CDS STMDT12_C34050 NC_016860.1 3538126 3538524 D COG3105 Uncharacterized protein conserved in bacteria; cytochrome d ubiquinol oxidase subunit III 3538126..3538524 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249102.1 CDS STMDT12_C34060 NC_016860.1 3538681 3540048 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3538681..3540048 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249103.1 CDS STMDT12_C34070 NC_016860.1 3540141 3541211 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 3540141..3541211 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249104.1 CDS STMDT12_C34080 NC_016860.1 3541245 3541976 R COG1767 Triphosphoribosyl-dephospho-CoA synthetase; putative inner membrane protein complement(3541245..3541976) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249105.1 CDS STMDT12_C34090 NC_016860.1 3541996 3543297 R COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; oxaloacetate decarboxylase subunit beta complement(3541996..3543297) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249106.1 CDS STMDT12_C34100 NC_016860.1 3543310 3545085 R COG5016 Pyruvate/oxaloacetate carboxyltransferase; oxaloacetate decarboxylase complement(3543310..3545085) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249107.1 CDS STMDT12_C34110 NC_016860.1 3545101 3545355 R COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; oxaloacetate decarboxylase subunit gamma complement(3545101..3545355) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249108.1 CDS STMDT12_C34120 NC_016860.1 3545511 3546128 R COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; L(+)-tartrate dehydratase subunit beta complement(3545511..3546128) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249109.1 CDS STMDT12_C34130 NC_016860.1 3546128 3547027 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; L(+)-tartrate dehydratase subunit alpha complement(3546128..3547027) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249110.1 CDS STMDT12_C34140 NC_016860.1 3547060 3548328 R COG0471 Di- and tricarboxylate transporters; putative cation transporter complement(3547060..3548328) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249111.1 CDS STMDT12_C34150 NC_016860.1 3548539 3549204 R COG1802 Transcriptional regulators; putative regulatory protein complement(3548539..3549204) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249112.1 CDS STMDT12_C34160 NC_016860.1 3549191 3549820 R COG1802 Transcriptional regulators; GntR family transcriptional regulator complement(3549191..3549820) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249113.1 CDS STMDT12_C34170 NC_016860.1 3549940 3550878 R COG0039 Malate/lactate dehydrogenases; malate dehydrogenase complement(3549940..3550878) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249114.1 CDS argR NC_016860.1 3551292 3551762 D COG1438 Arginine repressor; arginine repressor 3551292..3551762 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249115.1 CDS STMDT12_C34190 NC_016860.1 3551875 3551970 D hypothetical protein 3551875..3551970 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249116.1 CDS STMDT12_C34200 NC_016860.1 3552127 3552390 D hypothetical protein 3552127..3552390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249117.1 CDS STMDT12_C34210 NC_016860.1 3552494 3552760 D hypothetical protein 3552494..3552760 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249118.1 CDS STMDT12_C34220 NC_016860.1 3552820 3553092 R putative barnase inhibitor complement(3552820..3553092) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249119.1 CDS STMDT12_C34230 NC_016860.1 3553264 3555231 R COG1289 Predicted membrane protein; p-hydroxybenzoic acid efflux subunit AaeB complement(3553264..3555231) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249120.1 CDS STMDT12_C34240 NC_016860.1 3555237 3556169 R COG1566 Multidrug resistance efflux pump; p-hydroxybenzoic acid efflux subunit AaeA complement(3555237..3556169) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249121.1 CDS STMDT12_C34250 NC_016860.1 3556177 3556380 R hypothetical protein complement(3556177..3556380) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249122.1 CDS STMDT12_C34260 NC_016860.1 3556580 3557491 D COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator 3556580..3557491 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249123.1 CDS tldD NC_016860.1 3557614 3559059 R COG0312 Predicted Zn-dependent proteases and their inactivated homologs; protease TldD complement(3557614..3559059) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249124.1 CDS STMDT12_C34280 NC_016860.1 3559204 3562995 R COG3164 Predicted membrane protein; hypothetical protein complement(3559204..3562995) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249125.1 CDS STMDT12_C34290 NC_016860.1 3563111 3564580 R COG1530 Ribonucleases G and E; ribonuclease G complement(3563111..3564580) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249126.1 CDS STMDT12_C34300 NC_016860.1 3564570 3565163 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(3564570..3565163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249127.1 CDS STMDT12_C34310 NC_016860.1 3565172 3565663 R COG2891 Cell shape-determining protein; rod shape-determining protein MreD complement(3565172..3565663) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249128.1 CDS STMDT12_C34320 NC_016860.1 3565663 3566715 R COG1792 Cell shape-determining protein; rod shape-determining protein MreC complement(3565663..3566715) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249129.1 CDS STMDT12_C34330 NC_016860.1 3566780 3567823 R COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB complement(3566780..3567823) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249130.1 CDS STMDT12_C34340 NC_016860.1 3568131 3570071 R COG2199 FOG: GGDEF domain; regulatory protein CsrD complement(3568131..3570071) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249131.1 CDS STMDT12_C34350 NC_016860.1 3570275 3571249 D COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; hypothetical protein 3570275..3571249 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249132.1 CDS STMDT12_C34360 NC_016860.1 3571362 3572366 D COG2041 Sulfite oxidase and related enzymes; putative sulfite oxidase subunit YedY 3571362..3572366 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249133.1 CDS STMDT12_C34370 NC_016860.1 3572367 3572966 D COG2717 Predicted membrane protein; putative sulfite oxidase subunit YedZ 3572367..3572966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249134.1 CDS STMDT12_C34380 NC_016860.1 3573359 3573829 D COG0511 Biotin carboxyl carrier protein; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3573359..3573829 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249135.1 CDS STMDT12_C34390 NC_016860.1 3573840 3575189 D COG0439 Biotin carboxylase; acetyl-CoA carboxylase biotin carboxylase subunit 3573840..3575189 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249136.1 CDS STMDT12_C34400 NC_016860.1 3575298 3575540 D COG3924 Predicted membrane protein; hypothetical protein 3575298..3575540 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249137.1 CDS panF NC_016860.1 3575530 3576981 D COG4145 Na+/panthothenate symporter; sodium/panthothenate symporter 3575530..3576981 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249138.1 CDS prmA NC_016860.1 3576993 3577874 D COG2264 Ribosomal protein L11 methylase; 50S ribosomal protein L11 methyltransferase 3576993..3577874 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249139.1 CDS STMDT12_C34430 NC_016860.1 3578655 3579500 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase B 3578655..3579500 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249140.1 CDS fis NC_016860.1 3579526 3579822 D COG2901 Factor for inversion stimulation Fis, transcriptional activator; DNA-binding protein Fis 3579526..3579822 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249141.1 CDS STMDT12_C34450 NC_016860.1 3579908 3580792 D COG0863 DNA modification methylase; putative methyltransferase 3579908..3580792 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249142.1 CDS STMDT12_C34460 NC_016860.1 3580875 3581039 D hypothetical protein 3580875..3581039 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249143.1 CDS STMDT12_C34470 NC_016860.1 3581190 3583289 D COG3300 MHYT domain (predicted integral membrane sensor domain); putative signal transduction protein 3581190..3583289 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249144.1 CDS STMDT12_C34480 NC_016860.1 3583292 3583954 R COG1309 Transcriptional regulator; DNA-binding transcriptional regulator EnvR complement(3583292..3583954) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249145.1 CDS STMDT12_C34490 NC_016860.1 3584368 3585525 D COG0845 Membrane-fusion protein; acriflavine resistance protein E 3584368..3585525 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249146.1 CDS STMDT12_C34500 NC_016860.1 3585537 3588650 D COG0841 Cation/multidrug efflux pump; multidrug transport protein 3585537..3588650 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249147.1 CDS STMDT12_C34510 NC_016860.1 3588886 3589107 D putative lipoprotein 3588886..3589107 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249148.1 CDS STMDT12_C34520 NC_016860.1 3595480 3595632 R hypothetical protein complement(3595480..3595632) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249149.1 CDS STMDT12_C34530 NC_016860.1 3595746 3596300 D COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; hypothetical protein 3595746..3596300 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249150.1 CDS STMDT12_C34540 NC_016860.1 3596276 3596533 R hypothetical protein complement(3596276..3596533) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249151.1 CDS aroE NC_016860.1 3596530 3597348 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(3596530..3597348) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249152.1 CDS STMDT12_C34560 NC_016860.1 3597353 3597925 R COG0009 Putative translation factor (SUA5); putative ribosome maturation factor complement(3597353..3597925) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249153.1 CDS STMDT12_C34570 NC_016860.1 3597930 3598472 R COG0551 Zn-finger domain associated with topoisomerase type I; hypothetical protein complement(3597930..3598472) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249154.1 CDS STMDT12_C34580 NC_016860.1 3598499 3598972 R COG2922 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3598499..3598972) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249155.1 CDS STMDT12_C34590 NC_016860.1 3598944 3600068 R COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA protecting protein DprA complement(3598944..3600068) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249156.1 CDS def NC_016860.1 3600200 3600709 D COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 3600200..3600709 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249157.1 CDS fmt NC_016860.1 3600725 3601672 D COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3600725..3601672 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249158.1 CDS rsmB NC_016860.1 3601724 3603013 D COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase B 3601724..3603013 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249159.1 CDS trkA NC_016860.1 3603035 3604411 D COG0569 K+ transport systems, NAD-binding component; potassium transporter peripheral membrane protein 3603035..3604411 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249160.1 CDS mscL NC_016860.1 3604553 3604966 D COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 3604553..3604966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249161.1 CDS STMDT12_C34650 NC_016860.1 3604902 3605171 R COG3036 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(3604902..3605171) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249162.1 CDS zntR NC_016860.1 3605229 3605654 R COG0789 Predicted transcriptional regulators; zinc-responsive transcriptional regulator complement(3605229..3605654) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249163.1 CDS STMDT12_C34670 NC_016860.1 3605665 3606033 R hypothetical protein complement(3605665..3606033) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249164.1 CDS rplQ NC_016860.1 3606141 3606524 R COG0203 Ribosomal protein L17; 50S ribosomal protein L17 complement(3606141..3606524) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249165.1 CDS STMDT12_C34690 NC_016860.1 3606565 3607554 R COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha complement(3606565..3607554) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249166.1 CDS rpsD NC_016860.1 3607580 3608200 R COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 complement(3607580..3608200) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249167.1 CDS rpsK NC_016860.1 3608234 3608623 R COG0100 Ribosomal protein S11; 30S ribosomal protein S11 complement(3608234..3608623) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249168.1 CDS rpsM NC_016860.1 3608640 3608996 R COG0099 Ribosomal protein S13; 30S ribosomal protein S13 complement(3608640..3608996) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249169.1 CDS rpmJ1 NC_016860.1 3609143 3609259 R COG0257 Ribosomal protein L36; 50S ribosomal protein L36 complement(3609143..3609259) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249170.1 CDS secY NC_016860.1 3609291 3610622 R COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(3609291..3610622) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249171.1 CDS rplO NC_016860.1 3610630 3611064 R COG0200 Ribosomal protein L15; 50S ribosomal protein L15 complement(3610630..3611064) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249172.1 CDS rpmD NC_016860.1 3611068 3611247 R COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 complement(3611068..3611247) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249173.1 CDS rpsE NC_016860.1 3611251 3611754 R COG0098 Ribosomal protein S5; 30S ribosomal protein S5 complement(3611251..3611754) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249174.1 CDS rplR NC_016860.1 3611769 3612122 R COG0256 Ribosomal protein L18; 50S ribosomal protein L18 complement(3611769..3612122) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249175.1 CDS rplF NC_016860.1 3612132 3612665 R COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 complement(3612132..3612665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249176.1 CDS rpsH NC_016860.1 3612678 3613070 R COG0096 Ribosomal protein S8; 30S ribosomal protein S8 complement(3612678..3613070) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249177.1 CDS rpsN NC_016860.1 3613104 3613409 R COG0199 Ribosomal protein S14; 30S ribosomal protein S14 complement(3613104..3613409) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249178.1 CDS rplE NC_016860.1 3613424 3613963 R COG0094 Ribosomal protein L5; 50S ribosomal protein L5 complement(3613424..3613963) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249179.1 CDS rplX NC_016860.1 3613978 3614292 R COG0198 Ribosomal protein L24; 50S ribosomal protein L24 complement(3613978..3614292) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249180.1 CDS rplN NC_016860.1 3614303 3614674 R COG0093 Ribosomal protein L14; 50S ribosomal protein L14 complement(3614303..3614674) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249181.1 CDS rpsQ NC_016860.1 3614838 3615092 R COG0186 Ribosomal protein S17; 30S ribosomal protein S17 complement(3614838..3615092) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249182.1 CDS rpmC NC_016860.1 3615092 3615283 R COG0255 Ribosomal protein L29; 50S ribosomal protein L29 complement(3615092..3615283) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249183.1 CDS rplP NC_016860.1 3615283 3615693 R COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 complement(3615283..3615693) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249184.1 CDS rpsC NC_016860.1 3615706 3616407 R COG0092 Ribosomal protein S3; 30S ribosomal protein S3 complement(3615706..3616407) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249185.1 CDS rplV NC_016860.1 3616425 3616757 R COG0091 Ribosomal protein L22; 50S ribosomal protein L22 complement(3616425..3616757) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249186.1 CDS rpsS NC_016860.1 3616772 3617050 R COG0185 Ribosomal protein S19; 30S ribosomal protein S19 complement(3616772..3617050) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249187.1 CDS rplB NC_016860.1 3617067 3617888 R COG0090 Ribosomal protein L2; 50S ribosomal protein L2 complement(3617067..3617888) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249188.1 CDS rplW NC_016860.1 3617906 3618208 R COG0089 Ribosomal protein L23; 50S ribosomal protein L23 complement(3617906..3618208) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249189.1 CDS rplD NC_016860.1 3618205 3618810 R COG0088 Ribosomal protein L4; 50S ribosomal protein L4 complement(3618205..3618810) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249190.1 CDS rplC NC_016860.1 3618821 3619450 R COG0087 Ribosomal protein L3; 50S ribosomal protein L3 complement(3618821..3619450) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249191.1 CDS rpsJ NC_016860.1 3619483 3619794 R COG0051 Ribosomal protein S10; 30S ribosomal protein S10 complement(3619483..3619794) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249192.1 CDS STMDT12_C34960 NC_016860.1 3620174 3620641 D COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; type III leader peptidase 3620174..3620641 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249193.1 CDS STMDT12_C34970 NC_016860.1 3620638 3621114 R COG2193 Bacterioferritin (cytochrome b1); bacterioferritin complement(3620638..3621114) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249194.1 CDS STMDT12_C34980 NC_016860.1 3621187 3621381 R COG2906 Bacterioferritin-associated ferredoxin; bacterioferritin-associated ferredoxin complement(3621187..3621381) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249195.1 CDS STMDT12_C34990 NC_016860.1 3621566 3622750 R COG0050 GTPases - translation elongation factors; elongation factor Tu complement(3621566..3622750) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249196.1 CDS STMDT12_C35000 NC_016860.1 3622822 3624936 R COG0480 Translation elongation factors (GTPases); elongation factor G complement(3622822..3624936) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249197.1 CDS rpsG NC_016860.1 3625033 3625503 R COG0049 Ribosomal protein S7; 30S ribosomal protein S7 complement(3625033..3625503) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249198.1 CDS rpsL NC_016860.1 3625599 3625973 R COG0048 Ribosomal protein S12; 30S ribosomal protein S12 complement(3625599..3625973) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249199.1 CDS STMDT12_C35030 NC_016860.1 3626099 3626386 R COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur; sulfur transfer complex subunit TusB complement(3626099..3626386) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249200.1 CDS STMDT12_C35040 NC_016860.1 3626394 3626750 R COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; sulfur relay protein TusC complement(3626394..3626750) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249201.1 CDS STMDT12_C35050 NC_016860.1 3626750 3627136 R COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; sulfur transfer complex subunit TusD complement(3626750..3627136) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249202.1 CDS STMDT12_C35060 NC_016860.1 3627136 3627858 R COG2964 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3627136..3627858) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249203.1 CDS STMDT12_C35070 NC_016860.1 3628135 3628953 R COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3628135..3628953) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249204.1 CDS STMDT12_C35080 NC_016860.1 3629173 3629391 D COG2900 Uncharacterized protein conserved in bacteria; hypothetical protein 3629173..3629391 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249205.1 CDS STMDT12_C35090 NC_016860.1 3629579 3630169 R COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3629579..3630169) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249206.1 CDS STMDT12_C35100 NC_016860.1 3630264 3630464 R COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; hypothetical protein complement(3630264..3630464) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249207.1 CDS STMDT12_C35110 NC_016860.1 3630475 3632280 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefB complement(3630475..3632280) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249208.1 CDS STMDT12_C35120 NC_016860.1 3632280 3632831 R COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefG complement(3632280..3632831) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249209.1 CDS STMDT12_C35130 NC_016860.1 3633097 3635004 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; putative ABC transporter ATP-binding protein 3633097..3635004 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249210.1 CDS STMDT12_C35140 NC_016860.1 3635167 3635388 D hypothetical protein 3635167..3635388 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249211.1 CDS STMDT12_C35150 NC_016860.1 3635390 3635701 R hypothetical protein complement(3635390..3635701) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249212.1 CDS STMDT12_C35160 NC_016860.1 3635944 3636966 D COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; putative hydrolase 3635944..3636966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249213.1 CDS STMDT12_C35170 NC_016860.1 3636963 3637181 D COG3089 Uncharacterized protein conserved in bacteria; hypothetical protein 3636963..3637181 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249214.1 CDS STMDT12_C35180 NC_016860.1 3637233 3638102 D COG3954 Phosphoribulokinase; phosphoribulokinase 3637233..3638102 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249215.1 CDS STMDT12_C35190 NC_016860.1 3638198 3638602 R COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(3638198..3638602) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249216.1 CDS STMDT12_C35200 NC_016860.1 3638568 3638750 D hypothetical protein 3638568..3638750 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249217.1 CDS STMDT12_C35210 NC_016860.1 3638910 3639542 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; cAMP-regulatory protein 3638910..3639542 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249218.1 CDS STMDT12_C35220 NC_016860.1 3639591 3641678 D COG1289 Predicted membrane protein; YccS/YhfK family integral membrane protein 3639591..3641678 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249219.1 CDS argD NC_016860.1 3641721 3642938 R COG4992 Ornithine/acetylornithine aminotransferase; bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein complement(3641721..3642938) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249220.1 CDS STMDT12_C35240 NC_016860.1 3643024 3643587 R COG0512 Anthranilate/para-aminobenzoate synthases component II; para-aminobenzoate synthase component II complement(3643024..3643587) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249221.1 CDS STMDT12_C35250 NC_016860.1 3643619 3644221 R COG2184 Protein involved in cell division; cell filamentation protein Fic complement(3643619..3644221) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249222.1 CDS STMDT12_C35260 NC_016860.1 3644211 3644378 R hypothetical protein complement(3644211..3644378) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249223.1 CDS ppiA NC_016860.1 3644487 3645059 R COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase A complement(3644487..3645059) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249224.1 CDS STMDT12_C35280 NC_016860.1 3645336 3646517 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 3645336..3646517 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249225.1 CDS STMDT12_C35290 NC_016860.1 3646780 3649323 D COG1251 NAD(P)H-nitrite reductase; nitrite reductase [NAD(P)H], large subunit 3646780..3649323 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249226.1 CDS nirD NC_016860.1 3649320 3649646 D COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; nitrite reductase small subunit 3649320..3649646 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249227.1 CDS STMDT12_C35310 NC_016860.1 3649912 3650721 D COG2116 Formate/nitrite family of transporters; nitrite transporter NirC 3649912..3650721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249228.1 CDS cysG NC_016860.1 3650733 3652106 D COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); siroheme synthase 3650733..3652106 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249229.1 CDS STMDT12_C35330 NC_016860.1 3652441 3658293 D putative surface-exposed virulence protein 3652441..3658293 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249230.1 CDS STMDT12_C35340 NC_016860.1 3658425 3658883 R COG1943 Transposase and inactivated derivatives; IS200 transposase complement(3658425..3658883) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249231.1 CDS STMDT12_C35350 NC_016860.1 3659197 3659367 D putative outer membrane lipoprotein 3659197..3659367 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249232.1 CDS STMDT12_C35360 NC_016860.1 3659512 3660516 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase complement(3659512..3660516) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249233.1 CDS STMDT12_C35370 NC_016860.1 3660509 3661267 R COG0546 Predicted phosphatases; phosphoglycolate phosphatase complement(3660509..3661267) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249234.1 CDS STMDT12_C35380 NC_016860.1 3661260 3661937 R COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(3661260..3661937) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249235.1 CDS STMDT12_C35390 NC_016860.1 3661955 3662791 R COG0338 Site-specific DNA methylase; DNA adenine methylase complement(3661955..3662791) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249236.1 CDS STMDT12_C35400 NC_016860.1 3662972 3664249 R COG3266 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3662972..3664249) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249237.1 CDS aroB NC_016860.1 3664347 3665435 R COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase complement(3664347..3665435) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249238.1 CDS aroK NC_016860.1 3665492 3666013 R COG0703 Shikimate kinase; shikimate kinase I complement(3665492..3666013) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249239.1 CDS hofQ NC_016860.1 3666478 3667716 R COG4796 Type II secretory pathway, component HofQ; outer membrane porin HofQ complement(3666478..3667716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249240.1 CDS STMDT12_C35440 NC_016860.1 3667631 3668032 R putative inner membrane protein complement(3667631..3668032) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249241.1 CDS STMDT12_C35450 NC_016860.1 3668022 3668495 R putative inner membrane protein complement(3668022..3668495) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249242.1 CDS STMDT12_C35460 NC_016860.1 3668479 3669018 R COG3166 Tfp pilus assembly protein PilN; PilN family protein complement(3668479..3669018) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249243.1 CDS STMDT12_C35470 NC_016860.1 3669018 3669797 R putative pilus assembly protein complement(3669018..3669797) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249244.1 CDS mrcA NC_016860.1 3669918 3672470 D COG5009 Membrane carboxypeptidase/penicillin-binding protein; peptidoglycan synthetase 3669918..3672470 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249245.1 CDS nudE NC_016860.1 3672566 3673129 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose diphosphatase NudE complement(3672566..3673129) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249246.1 CDS STMDT12_C35500 NC_016860.1 3673452 3675584 D COG3538 Uncharacterized conserved protein; intracellular growth attenuator protein IgaA 3673452..3675584 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249247.1 CDS STMDT12_C35510 NC_016860.1 3675649 3676317 D COG1011 Predicted hydrolase (HAD superfamily); putative hydrolase 3675649..3676317 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249248.1 CDS STMDT12_C35520 NC_016860.1 3676328 3676729 D COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 3676328..3676729 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249249.1 CDS hslO NC_016860.1 3676754 3677632 D COG1281 Disulfide bond chaperones of the HSP33 family; Hsp33-like chaperonin 3676754..3677632 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249250.1 CDS STMDT12_C35540 NC_016860.1 3677742 3679451 R putative inner membrane protein complement(3677742..3679451) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249251.1 CDS STMDT12_C35550 NC_016860.1 3679831 3681450 D COG1866 Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 3679831..3681450 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249252.1 CDS envZ NC_016860.1 3681525 3682868 R COG0642 Signal transduction histidine kinase; osmolarity sensor protein complement(3681525..3682868) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249253.1 CDS ompR NC_016860.1 3682874 3683593 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; osmolarity response regulator complement(3682874..3683593) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249254.1 CDS greB NC_016860.1 3683819 3684292 D COG0782 Transcription elongation factor; transcription elongation factor GreB 3683819..3684292 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249255.1 CDS STMDT12_C35590 NC_016860.1 3684391 3686721 D COG2183 Transcriptional accessory protein; putative transcriptional accessory protein 3684391..3686721 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249256.1 CDS feoA NC_016860.1 3687158 3687385 D COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 3687158..3687385 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249257.1 CDS feoB NC_016860.1 3687404 3689722 D COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 3687404..3689722 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249258.1 CDS STMDT12_C35620 NC_016860.1 3689735 3689971 D hypothetical protein 3689735..3689971 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249259.1 CDS STMDT12_C35630 NC_016860.1 3690206 3691120 D hypothetical protein 3690206..3691120 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249260.1 CDS STMDT12_C35640 NC_016860.1 3691156 3691926 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); carboxylesterase BioH complement(3691156..3691926) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249261.1 CDS STMDT12_C35650 NC_016860.1 3691964 3692647 D COG1040 Predicted amidophosphoribosyltransferases; gluconate periplasmic binding protein 3691964..3692647 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249262.1 CDS STMDT12_C35660 NC_016860.1 3692706 3693281 D COG0316 Uncharacterized conserved protein; putative DNA uptake protein 3692706..3693281 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249263.1 CDS STMDT12_C35670 NC_016860.1 3693658 3694974 D COG2610 H+/gluconate symporter and related permeases; high-affinity gluconate transporter 3693658..3694974 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249264.1 CDS malQ NC_016860.1 3695093 3697171 R COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(3695093..3697171) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249265.1 CDS STMDT12_C35690 NC_016860.1 3697181 3699574 R COG0058 Glucan phosphorylase; maltodextrin phosphorylase complement(3697181..3699574) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249266.1 CDS STMDT12_C35700 NC_016860.1 3700168 3702873 D COG2909 ATP-dependent transcriptional regulator; transcriptional regulator MalT 3700168..3702873 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249267.1 CDS STMDT12_C35710 NC_016860.1 3702961 3703236 R COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3702961..3703236) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249268.1 CDS STMDT12_C35720 NC_016860.1 3703239 3703499 R COG3077 DNA-damage-inducible protein J; hypothetical protein complement(3703239..3703499) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249269.1 CDS STMDT12_C35730 NC_016860.1 3703608 3704627 R COG0430 RNA 3'-terminal phosphate cyclase; RNA 3'-terminal-phosphate cyclase complement(3703608..3704627) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249270.1 CDS STMDT12_C35740 NC_016860.1 3704631 3705848 R COG1690 Uncharacterized conserved protein; putative cytoplasmic protein complement(3704631..3705848) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249271.1 CDS STMDT12_C35750 NC_016860.1 3706193 3706360 R putative frameshift mutation; 60-kDa SS-A/Ro ribonucleoprotein complement(3706193..3706360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249272.1 CDS STMDT12_C35760 NC_016860.1 3706393 3707946 R putative frameshift mutation; 60-kDa SS-A/Ro ribonucleoprotein complement(3706393..3707946) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249273.1 CDS rtcR NC_016860.1 3708136 3709719 D COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; sigma-54 dependent transcriptional regulator RtcR 3708136..3709719 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249274.1 CDS STMDT12_C35780 NC_016860.1 3709716 3710474 R COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor GlpR complement(3709716..3710474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249275.1 CDS STMDT12_C35790 NC_016860.1 3710568 3711392 R COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); intramembrane serine protease GlpG complement(3710568..3711392) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249276.1 CDS glpE NC_016860.1 3711474 3711800 R COG0607 Rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase complement(3711474..3711800) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249277.1 CDS glpD NC_016860.1 3711999 3713507 D COG0578 Glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 3711999..3713507 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249278.1 CDS STMDT12_C35820 NC_016860.1 3713554 3714099 R hypothetical protein complement(3713554..3714099) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249279.1 CDS STMDT12_C35830 NC_016860.1 3714109 3715605 R COG0226 ABC-type phosphate transport system, periplasmic component; putative periplasmic phosphate-binding protein complement(3714109..3715605) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249280.1 CDS gldA NC_016860.1 3715762 3716871 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(3715762..3716871) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249281.1 CDS STMDT12_C35850 NC_016860.1 3717209 3718543 D COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter 3717209..3718543 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249282.1 CDS STMDT12_C35860 NC_016860.1 3718540 3720255 D COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; putative dihydroxyacid dehydratase 3718540..3720255 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249283.1 CDS STMDT12_C35870 NC_016860.1 3720299 3721204 D COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 3720299..3721204 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249284.1 CDS STMDT12_C35880 NC_016860.1 3721248 3722003 R COG1414 Transcriptional regulator; putative transcriptional regulator complement(3721248..3722003) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249285.1 CDS STMDT12_C35890 NC_016860.1 3722181 3724628 R COG0058 Glucan phosphorylase; glycogen phosphorylase complement(3722181..3724628) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249286.1 CDS glgA NC_016860.1 3724648 3726081 R COG0297 Glycogen synthase; glycogen synthase complement(3724648..3726081) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249287.1 CDS glgC NC_016860.1 3726081 3727376 R COG0448 ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase complement(3726081..3727376) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249288.1 CDS STMDT12_C35920 NC_016860.1 3727391 3729367 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen debranching protein complement(3727391..3729367) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249289.1 CDS STMDT12_C35930 NC_016860.1 3729364 3731550 R COG0296 1,4-alpha-glucan branching enzyme; glycogen branching protein complement(3729364..3731550) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249290.1 CDS STMDT12_C35940 NC_016860.1 3731897 3733003 R COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(3731897..3733003) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249291.1 CDS STMDT12_C35950 NC_016860.1 3733427 3734767 R COG2610 H+/gluconate symporter and related permeases; low affinity gluconate transporter complement(3733427..3734767) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249292.1 CDS gntK NC_016860.1 3734764 3735297 R COG3265 Gluconate kinase; gluconate kinase complement(3734764..3735297) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249293.1 CDS STMDT12_C35970 NC_016860.1 3735436 3736431 R COG1609 Transcriptional regulators; gluconate utilization operon repressor complement(3735436..3736431) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249294.1 CDS STMDT12_C35980 NC_016860.1 3736561 3737256 R COG1741 Pirin-related protein; protein YhhW complement(3736561..3737256) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249295.1 CDS STMDT12_C35990 NC_016860.1 3737380 3738417 R COG0673 Predicted dehydrogenases and related proteins; putative dehydrogenase complement(3737380..3738417) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249296.1 CDS STMDT12_C36000 NC_016860.1 3738886 3739374 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase YhhY 3738886..3739374 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249297.1 CDS STMDT12_C36010 NC_016860.1 3739455 3739571 R hypothetical protein complement(3739455..3739571) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249298.1 CDS STMDT12_C36020 NC_016860.1 3739639 3740853 D COG1349 Transcriptional regulators of sugar metabolism; ribokinase 3739639..3740853 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249299.1 CDS STMDT12_C36030 NC_016860.1 3740869 3741630 D COG5426 Uncharacterized membrane protein; hypothetical protein 3740869..3741630 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249300.1 CDS STMDT12_C36040 NC_016860.1 3741684 3742655 D COG3238 Uncharacterized protein conserved in bacteria; putative inner membrane protein 3741684..3742655 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249301.1 CDS STMDT12_C36050 NC_016860.1 3742652 3743686 D COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold; putative phosphotriesterase 3742652..3743686 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249302.1 CDS ggt NC_016860.1 3743731 3745473 R COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase complement(3743731..3745473) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249303.1 CDS STMDT12_C36070 NC_016860.1 3745599 3746015 D hypothetical protein 3745599..3746015 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249304.1 CDS ugpQ NC_016860.1 3746028 3746768 R COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(3746028..3746768) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249305.1 CDS ugpC NC_016860.1 3746765 3747835 R COG3839 ABC-type sugar transport systems, ATPase components; glycerol-3-phosphate ABC transporter ATP-binding protein complement(3746765..3747835) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249306.1 CDS STMDT12_C36100 NC_016860.1 3747837 3748682 R COG0395 ABC-type sugar transport system, permease component; glycerol-3-phosphate ABC transporter permease complement(3747837..3748682) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249307.1 CDS STMDT12_C36110 NC_016860.1 3748679 3749566 R COG1175 ABC-type sugar transport systems, permease components; glycerol-3-phosphate ABC transporter permease complement(3748679..3749566) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249308.1 CDS STMDT12_C36120 NC_016860.1 3749630 3750946 R COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate ABC transporter substrate binding protein complement(3749630..3750946) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249309.1 CDS STMDT12_C36130 NC_016860.1 3751205 3751573 R COG3654 Prophage maintenance system killer protein; death on curing protein complement(3751205..3751573) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249310.1 CDS STMDT12_C36140 NC_016860.1 3751570 3751791 R COG2161 Antitoxin of toxin-antitoxin stability system; addiction module antitoxin, Axe family protein complement(3751570..3751791) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249311.1 CDS livF NC_016860.1 3751923 3752636 R COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine ABC transporter ATP-binding protein complement(3751923..3752636) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249312.1 CDS livG NC_016860.1 3752638 3753405 R COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine ABC transporter ATP-binding protein complement(3752638..3753405) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249313.1 CDS livM NC_016860.1 3753402 3754679 R COG4177 ABC-type branched-chain amino acid transport system, permease component; leucine/isoleucine/valine ABC transporter permease protein complement(3753402..3754679) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249314.1 CDS STMDT12_C36180 NC_016860.1 3754676 3755602 R COG0559 Branched-chain amino acid ABC-type transport system, permease components; branched-chain amino acid ABC transporter permease protein LivH complement(3754676..3755602) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249315.1 CDS STMDT12_C36190 NC_016860.1 3755662 3756771 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine-specific binding protein complement(3755662..3756771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249316.1 CDS STMDT12_C36200 NC_016860.1 3757193 3757576 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 3757193..3757576 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249317.1 CDS STMDT12_C36210 NC_016860.1 3757771 3758874 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine-specific binding protein complement(3757771..3758874) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249318.1 CDS STMDT12_C36220 NC_016860.1 3759196 3760050 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase factor sigma-32 complement(3759196..3760050) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249319.1 CDS ftsX NC_016860.1 3760296 3761351 R COG2177 Cell division protein; cell division protein FtsX complement(3760296..3761351) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249320.1 CDS STMDT12_C36240 NC_016860.1 3761344 3762012 R COG2884 Predicted ATPase involved in cell division; cell division protein FtsE complement(3761344..3762012) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249321.1 CDS STMDT12_C36250 NC_016860.1 3762015 3763490 R COG0552 Signal recognition particle GTPase; cell division protein FtsY complement(3762015..3763490) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249322.1 CDS rsmD NC_016860.1 3763616 3764212 D COG0742 N6-adenine-specific methylase; 16S rRNA methyltransferase RsmD 3763616..3764212 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249323.1 CDS STMDT12_C36270 NC_016860.1 3764202 3764471 D COG3776 Predicted membrane protein; hypothetical protein 3764202..3764471 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249324.1 CDS STMDT12_C36280 NC_016860.1 3764493 3764864 R putative inner membrane protein complement(3764493..3764864) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249325.1 CDS STMDT12_C36290 NC_016860.1 3765006 3765632 D COG3714 Predicted membrane protein; hypothetical protein 3765006..3765632 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249326.1 CDS zntA NC_016860.1 3765713 3767911 D COG2217 Cation transport ATPase; zinc/cadmium/mercury/lead-transporting ATPase 3765713..3767911 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249327.1 CDS STMDT12_C36310 NC_016860.1 3768111 3769754 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting transmembrane citrate/phenol chemoreceptor 3768111..3769754 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249328.1 CDS STMDT12_C36320 NC_016860.1 3769778 3770113 R COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(3769778..3770113) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249329.1 CDS STMDT12_C36330 NC_016860.1 3770193 3770858 D COG1738 Uncharacterized conserved protein; hypothetical protein 3770193..3770858 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249330.1 CDS STMDT12_C36340 NC_016860.1 3770931 3771488 D hypothetical protein 3770931..3771488 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249331.1 CDS STMDT12_C36350 NC_016860.1 3771492 3772709 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(3771492..3772709) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249332.1 CDS STMDT12_C36360 NC_016860.1 3772841 3773890 D COG0628 Predicted permease; inner membrane protein YhhT 3772841..3773890 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249333.1 CDS acpT NC_016860.1 3773942 3774520 D COG2091 Phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase AcpT 3773942..3774520 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249334.1 CDS STMDT12_C36380 NC_016860.1 3774576 3775013 D COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 3774576..3775013 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249335.1 CDS STMDT12_C36390 NC_016860.1 3775103 3776227 R COG0842 ABC-type multidrug transport system, permease component; hypothetical protein complement(3775103..3776227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249336.1 CDS STMDT12_C36400 NC_016860.1 3776227 3778968 R COG1131 ABC-type multidrug transport system, ATPase component; putative multidrug ABC transporter ATP-binding protein complement(3776227..3778968) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249337.1 CDS STMDT12_C36410 NC_016860.1 3778965 3780032 R COG0845 Membrane-fusion protein; secretion protein HlyD family complement(3778965..3780032) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249338.1 CDS STMDT12_C36420 NC_016860.1 3780338 3781534 R COG2081 Predicted flavoproteins; hypothetical protein complement(3780338..3781534) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249339.1 CDS STMDT12_C36430 NC_016860.1 3781765 3783261 D COG0306 Phosphate/sulphate permeases; putative low-affinity inorganic phosphate transporter 3781765..3783261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249340.1 CDS STMDT12_C36440 NC_016860.1 3783401 3783736 R universal stress protein UspB complement(3783401..3783736) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249341.1 CDS STMDT12_C36450 NC_016860.1 3784124 3784558 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspA 3784124..3784558 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249342.1 CDS STMDT12_C36460 NC_016860.1 3784883 3786352 D COG3104 Dipeptide/tripeptide permease; inner membrane transport protein YhiP 3784883..3786352 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249343.1 CDS STMDT12_C36470 NC_016860.1 3786444 3787202 R COG0500 SAM-dependent methyltransferases; putative methyltransferase complement(3786444..3787202) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249344.1 CDS STMDT12_C36480 NC_016860.1 3787209 3789251 R COG0339 Zn-dependent oligopeptidases; oligopeptidase A complement(3787209..3789251) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249345.1 CDS STMDT12_C36490 NC_016860.1 3789433 3790704 R COG0671 Membrane-associated phospholipid phosphatase; putative phosphatase complement(3789433..3790704) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249346.1 CDS yhiR NC_016860.1 3790915 3791757 D COG2961 Protein involved in catabolism of external DNA; putative DNA processing protein 3790915..3791757 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249347.1 CDS STMDT12_C36510 NC_016860.1 3791862 3793214 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; glutathione reductase 3791862..3793214 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249348.1 CDS STMDT12_C36520 NC_016860.1 3793261 3794304 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase complement(3793261..3794304) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249349.1 CDS STMDT12_C36530 NC_016860.1 3794363 3795682 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(3794363..3795682) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249350.1 CDS STMDT12_C36540 NC_016860.1 3795890 3796165 D COG3677 Transposase and inactivated derivatives; IS1 transposase 3795890..3796165 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249351.1 CDS STMDT12_C36550 NC_016860.1 3796084 3796587 D COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 3796084..3796587 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249352.1 CDS STMDT12_C36560 NC_016860.1 3796581 3797246 R COG2222 Predicted phosphosugar isomerases; putative phosphosugar isomerase complement(3796581..3797246) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249353.1 CDS STMDT12_C36570 NC_016860.1 3797425 3798144 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(3797425..3798144) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249354.1 CDS treF NC_016860.1 3798470 3800119 D COG1626 Neutral trehalase; trehalase 3798470..3800119 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249355.1 CDS STMDT12_C36590 NC_016860.1 3800132 3801721 R putative inner membrane protein complement(3800132..3801721) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249356.1 CDS STMDT12_C36600 NC_016860.1 3802002 3802358 D COG3772 Phage-related lysozyme (muraminidase); phage-like lysozyme 3802002..3802358 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249357.1 CDS STMDT12_C36610 NC_016860.1 3802364 3802966 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; putative transcriptional regulator complement(3802364..3802966) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249358.1 CDS STMDT12_C36620 NC_016860.1 3803597 3804496 D COG0583 Transcriptional regulator; putative transcriptional regulator 3803597..3804496 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249359.1 CDS STMDT12_C36630 NC_016860.1 3804569 3805597 D COG1295 Predicted membrane protein; hypothetical protein 3804569..3805597 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249360.1 CDS STMDT12_C36640 NC_016860.1 3805948 3807270 D COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter 3805948..3807270 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249361.1 CDS STMDT12_C36650 NC_016860.1 3807310 3809370 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; putative inner membrane protein complement(3807310..3809370) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249362.1 CDS STMDT12_C36660 NC_016860.1 3809480 3810247 R COG2200 FOG: EAL domain; EAL domain-containing protein complement(3809480..3810247) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249363.1 CDS STMDT12_C36670 NC_016860.1 3810476 3811405 D COG0524 Sugar kinases, ribokinase family; ketodeoxygluconokinase 3810476..3811405 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249364.1 CDS STMDT12_C36680 NC_016860.1 3811459 3812946 R COG0612 Predicted Zn-dependent peptidases; protein YhjJ complement(3811459..3812946) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249365.1 CDS STMDT12_C36690 NC_016860.1 3813166 3814452 R COG1301 Na+/H+-dicarboxylate symporters; C4-dicarboxylate transporter DctA complement(3813166..3814452) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249366.1 CDS STMDT12_C36700 NC_016860.1 3814610 3816616 R COG2199 FOG: GGDEF domain; putative phosphodiesterase complement(3814610..3816616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249367.1 CDS STMDT12_C36710 NC_016860.1 3816790 3820332 R COG0457 FOG: TPR repeat; cellulose synthase subunit BcsC complement(3816790..3820332) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249368.1 CDS STMDT12_C36720 NC_016860.1 3820314 3821423 R COG3405 Endoglucanase Y; endo-1,4-D-glucanase complement(3820314..3821423) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249369.1 CDS STMDT12_C36730 NC_016860.1 3821427 3823706 R cellulose synthase regulatory subunit complement(3821427..3823706) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249370.1 CDS bcsA NC_016860.1 3823738 3826362 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; cellulose synthase catalytic subunit complement(3823738..3826362) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249371.1 CDS STMDT12_C36750 NC_016860.1 3826359 3827111 R COG1192 ATPases involved in chromosome partitioning; cellulose synthase operon protein complement(3826359..3827111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249372.1 CDS STMDT12_C36760 NC_016860.1 3827112 3827315 R hypothetical protein complement(3827112..3827315) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249373.1 CDS STMDT12_C36770 NC_016860.1 3827572 3829131 D cellulose biosynthesis protein BcsE 3827572..3829131 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249374.1 CDS STMDT12_C36780 NC_016860.1 3829128 3829319 D cellulose biosynthesis operon protein BcsF/YhjT 3829128..3829319 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249375.1 CDS STMDT12_C36790 NC_016860.1 3829316 3830995 D putative endoglucanase 3829316..3830995 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249376.1 CDS STMDT12_C36800 NC_016860.1 3831077 3831184 R small toxic polypeptide complement(3831077..3831184) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249377.1 CDS STMDT12_C36810 NC_016860.1 3831569 3831709 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; hypothetical protein 3831569..3831709 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249378.1 CDS STMDT12_C36820 NC_016860.1 3831827 3833125 D COG0814 Amino acid permeases; inner membrane transport protein YhaO 3831827..3833125 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249379.1 CDS dppF NC_016860.1 3833226 3834239 R COG4608 ABC-type oligopeptide transport system, ATPase component; dipeptide ABC transporter ATP-binding protein complement(3833226..3834239) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249380.1 CDS dppD NC_016860.1 3834236 3835219 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; dipeptide ABC transporter ATP-binding protein complement(3834236..3835219) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249381.1 CDS STMDT12_C36850 NC_016860.1 3835230 3836132 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide ABC transporter permease protein complement(3835230..3836132) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249382.1 CDS STMDT12_C36860 NC_016860.1 3836142 3837161 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide ABC transporter permease protein complement(3836142..3837161) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249383.1 CDS STMDT12_C36870 NC_016860.1 3837318 3838898 R COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide ABC transporter substrate binding protein complement(3837318..3838898) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249384.1 CDS STMDT12_C36880 NC_016860.1 3839481 3840806 R COG2233 Xanthine/uracil permeases; putative xanthine permease complement(3839481..3840806) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249385.1 CDS STMDT12_C36890 NC_016860.1 3840864 3841988 R hypothetical protein complement(3840864..3841988) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249386.1 CDS STMDT12_C36900 NC_016860.1 3841976 3842188 R hypothetical protein complement(3841976..3842188) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249387.1 CDS STMDT12_C36910 NC_016860.1 3842138 3843145 D COG1609 Transcriptional regulators; putative regulatory protein 3842138..3843145 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249388.1 CDS STMDT12_C36920 NC_016860.1 3843472 3845163 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; phosphoethanolamine transferase complement(3843472..3845163) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249389.1 CDS lpfE NC_016860.1 3845381 3845908 R COG3539 P pilus assembly protein, pilin FimA; long polar fimbrial minor protein complement(3845381..3845908) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249390.1 CDS STMDT12_C36940 NC_016860.1 3845914 3846993 R long polar fimbrial protein complement(3845914..3846993) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249391.1 CDS STMDT12_C36950 NC_016860.1 3847011 3849539 R COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD complement(3847011..3849539) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249392.1 CDS lpfB NC_016860.1 3849562 3850260 R COG3121 P pilus assembly protein, chaperone PapD; chaperone protein LpfB complement(3849562..3850260) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249393.1 CDS STMDT12_C36970 NC_016860.1 3850345 3850869 R COG3539 P pilus assembly protein, pilin FimA; long polar fimbria complement(3850345..3850869) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249394.1 CDS STMDT12_C36980 NC_016860.1 3851387 3852091 R putative lipoprotein complement(3851387..3852091) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249395.1 CDS STMDT12_C36990 NC_016860.1 3852248 3852829 D COG2818 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 3852248..3852829 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249396.1 CDS STMDT12_C37000 NC_016860.1 3852807 3853247 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 3852807..3853247 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249397.1 CDS STMDT12_C37010 NC_016860.1 3853216 3855549 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase complement(3853216..3855549) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249398.1 CDS STMDT12_C37020 NC_016860.1 3855702 3856364 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; putative outer membrane lipoprotein 3855702..3856364 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249399.1 CDS STMDT12_C37030 NC_016860.1 3856583 3857557 D COG1052 Lactate dehydrogenase and related dehydrogenases; 2-ketogluconate reductase 3856583..3857557 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249400.1 CDS STMDT12_C37040 NC_016860.1 3857607 3858317 R hypothetical protein complement(3857607..3858317) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249401.1 CDS STMDT12_C37050 NC_016860.1 3858756 3859046 D COG2944 Predicted transcriptional regulator; putative transcriptional regulator 3858756..3859046 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249402.1 CDS STMDT12_C37060 NC_016860.1 3859335 3859547 D COG1278 Cold shock proteins; major cold shock protein 3859335..3859547 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249403.1 CDS STMDT12_C37070 NC_016860.1 3859721 3860260 D hypothetical protein 3859721..3860260 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249404.1 CDS STMDT12_C37080 NC_016860.1 3860632 3861117 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(3860632..3861117) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249405.1 CDS STMDT12_C37090 NC_016860.1 3861105 3861371 R COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3861105..3861371) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249406.1 CDS STMDT12_C37100 NC_016860.1 3861570 3862037 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(3861570..3862037) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249407.1 CDS STMDT12_C37110 NC_016860.1 3862209 3862400 R COG2801 Transposase and inactivated derivatives; putative transposase complement(3862209..3862400) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249408.1 CDS glyS NC_016860.1 3862666 3864735 R COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(3862666..3864735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249409.1 CDS glyQ NC_016860.1 3864745 3865656 R COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha complement(3864745..3865656) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249410.1 CDS STMDT12_C37140 NC_016860.1 3865795 3866001 R putative lipoprotein complement(3865795..3866001) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249411.1 CDS STMDT12_C37150 NC_016860.1 3866263 3867258 D COG3274 Uncharacterized protein conserved in bacteria; acyltransferase 3 3866263..3867258 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249412.1 CDS STMDT12_C37160 NC_016860.1 3867281 3867634 R putative inner membrane protein complement(3867281..3867634) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249413.1 CDS STMDT12_C37170 NC_016860.1 3867809 3869263 R COG1070 Sugar (pentulose and hexulose) kinases; xylulokinase complement(3867809..3869263) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249414.1 CDS STMDT12_C37180 NC_016860.1 3869363 3870685 R COG2115 Xylose isomerase; xylose isomerase complement(3869363..3870685) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249415.1 CDS STMDT12_C37190 NC_016860.1 3871048 3872226 D COG1609 Transcriptional regulators; xylose operon regulatory protein 3871048..3872226 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249416.1 CDS STMDT12_C37200 NC_016860.1 3872287 3872859 R COG2992 Uncharacterized FlgJ-related protein; hypothetical protein complement(3872287..3872859) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249417.1 CDS malS NC_016860.1 3873427 3875454 D COG0366 Glycosidases; periplasmic alpha-amylase 3873427..3875454 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249418.1 CDS avtA NC_016860.1 3875628 3876878 D COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; valine--pyruvate transaminase 3875628..3876878 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249419.1 CDS STMDT12_C37230 NC_016860.1 3876915 3877388 R COG1142 Fe-S-cluster-containing hydrogenase components 2; putative oxidoreductase complement(3876915..3877388) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249420.1 CDS STMDT12_C37240 NC_016860.1 3877505 3878305 R COG1414 Transcriptional regulator; transcriptional repressor complement(3877505..3878305) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249421.1 CDS STMDT12_C37250 NC_016860.1 3878535 3879533 D COG2055 Malate/L-lactate dehydrogenases; 2,3-diketo-L-gulonate reductase 3878535..3879533 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249422.1 CDS STMDT12_C37260 NC_016860.1 3879545 3880009 D COG2731 Beta-galactosidase, beta subunit; putative cytoplasmic protein 3879545..3880009 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249423.1 CDS STMDT12_C37270 NC_016860.1 3880033 3880965 D putative chemotaxis protein 3880033..3880965 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249424.1 CDS STMDT12_C37280 NC_016860.1 3881104 3881577 D COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; 2,3-diketo-L-gulonate TRAP transporter small permease 3881104..3881577 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249425.1 CDS STMDT12_C37290 NC_016860.1 3881580 3882857 D COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; hypothetical protein 3881580..3882857 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249426.1 CDS STMDT12_C37300 NC_016860.1 3882869 3883855 D COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; putative periplasmic dicarboxylate-binding protein 3882869..3883855 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249427.1 CDS STMDT12_C37310 NC_016860.1 3883859 3885355 D COG1070 Sugar (pentulose and hexulose) kinases; L-xylulose kinase 3883859..3885355 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249428.1 CDS sgbH NC_016860.1 3885352 3886014 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 3885352..3886014 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249429.1 CDS STMDT12_C37330 NC_016860.1 3886007 3886867 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; putative L-xylulose 5-phosphate 3-epimerase 3886007..3886867 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249430.1 CDS sgbE NC_016860.1 3886861 3887556 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 3886861..3887556 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249431.1 CDS STMDT12_C37350 NC_016860.1 3887717 3888532 R COG2207 AraC-type DNA-binding domain-containing proteins; putative regulatory protein complement(3887717..3888532) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249432.1 CDS STMDT12_C37360 NC_016860.1 3888796 3890751 D COG3533 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 3888796..3890751 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249433.1 CDS STMDT12_C37370 NC_016860.1 3890869 3892407 R COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase B complement(3890869..3892407) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249434.1 CDS STMDT12_C37380 NC_016860.1 3892576 3893457 D COG1940 Transcriptional regulator/sugar kinase; putative transcriptional regulator 3892576..3893457 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249435.1 CDS selB NC_016860.1 3893742 3895592 R COG3276 Selenocysteine-specific translation elongation factor; selenocysteinyl-tRNA-specific translation factor complement(3893742..3895592) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249436.1 CDS selA NC_016860.1 3895589 3896980 R COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase complement(3895589..3896980) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249437.1 CDS STMDT12_C37410 NC_016860.1 3897079 3897687 R COG0625 Glutathione S-transferase; putative glutathione S-transferase complement(3897079..3897687) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249438.1 CDS STMDT12_C37420 NC_016860.1 3898163 3900079 D COG2213 Phosphotransferase system, mannitol-specific IIBC component; mannitol-specific PTS system EIICBA protein 3898163..3900079 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249439.1 CDS STMDT12_C37430 NC_016860.1 3900300 3901448 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 3900300..3901448 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249440.1 CDS mtlR NC_016860.1 3901445 3902035 D COG3722 Transcriptional regulator; mannitol repressor protein 3901445..3902035 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249441.1 CDS STMDT12_C37450 NC_016860.1 3902045 3902254 R hypothetical protein complement(3902045..3902254) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249442.1 CDS STMDT12_C37460 NC_016860.1 3902545 3902907 D COG0323 DNA mismatch repair enzyme (predicted ATPase); hypothetical protein 3902545..3902907 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249443.1 CDS STMDT12_C37470 NC_016860.1 3903397 3904080 D putative lipoprotein 3903397..3904080 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249444.1 CDS STMDT12_C37480 NC_016860.1 3904124 3908509 D COG5295 Autotransporter adhesin; putative inner membrane protein 3904124..3908509 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249445.1 CDS STMDT12_C37490 NC_016860.1 3908808 3910463 D COG1620 L-lactate permease; L-lactate permease 3908808..3910463 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249446.1 CDS STMDT12_C37500 NC_016860.1 3910460 3911236 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor LldR 3910460..3911236 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249447.1 CDS lldD NC_016860.1 3911233 3912423 D COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate dehydrogenase 3911233..3912423 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249448.1 CDS STMDT12_C37520 NC_016860.1 3912487 3912960 D COG0219 Predicted rRNA methylase (SpoU class); putative tRNA/rRNA methyltransferase YibK 3912487..3912960 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249449.1 CDS STMDT12_C37530 NC_016860.1 3913028 3914032 R COG1609 Transcriptional regulators; putative transcriptional regulator complement(3913028..3914032) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249450.1 CDS STMDT12_C37540 NC_016860.1 3914351 3915547 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; mandelate racemase/muconate lactonizing protein 3914351..3915547 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249451.1 CDS STMDT12_C37550 NC_016860.1 3915621 3916931 D COG0477 Permeases of the major facilitator superfamily; putative glucarate transporter 3915621..3916931 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249452.1 CDS cysE NC_016860.1 3917014 3917835 R COG1045 Serine acetyltransferase; serine acetyltransferase complement(3917014..3917835) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249453.1 CDS gpsA NC_016860.1 3917913 3918932 R COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3917913..3918932) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249454.1 CDS STMDT12_C37580 NC_016860.1 3918932 3919399 R COG1952 Preprotein translocase subunit SecB; preprotein translocase subunit SecB complement(3918932..3919399) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249455.1 CDS STMDT12_C37590 NC_016860.1 3919443 3919694 R COG0695 Glutaredoxin and related proteins; glutaredoxin 3 complement(3919443..3919694) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249456.1 CDS STMDT12_C37600 NC_016860.1 3919781 3920212 R COG0607 Rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(3919781..3920212) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249457.1 CDS STMDT12_C37610 NC_016860.1 3920460 3922004 D COG0696 Phosphoglyceromutase; phosphoglycerate mutase 3920460..3922004 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249458.1 CDS STMDT12_C37620 NC_016860.1 3922014 3923297 D COG4942 Membrane-bound metallopeptidase; hypothetical protein 3922014..3923297 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249459.1 CDS STMDT12_C37630 NC_016860.1 3923301 3924263 D COG2861 Uncharacterized protein conserved in bacteria; divergent polysaccharide deacetylase 3923301..3924263 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249460.1 CDS STMDT12_C37640 NC_016860.1 3924250 3925284 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyl transferase complement(3924250..3925284) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249461.1 CDS tdh NC_016860.1 3925778 3926803 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-threonine 3-dehydrogenase complement(3925778..3926803) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249462.1 CDS STMDT12_C37660 NC_016860.1 3926813 3928009 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 2-amino-3-ketobutyrate coenzyme A ligase complement(3926813..3928009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249463.1 CDS rfaD NC_016860.1 3928212 3929144 D COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-manno-heptose-6-epimerase 3928212..3929144 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249464.1 CDS STMDT12_C37680 NC_016860.1 3929147 3930193 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase 3929147..3930193 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249465.1 CDS STMDT12_C37690 NC_016860.1 3930193 3931146 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase 3930193..3931146 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249466.1 CDS STMDT12_C37700 NC_016860.1 3931186 3932400 D O-antigen ligase 3931186..3932400 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249467.1 CDS STMDT12_C37710 NC_016860.1 3932457 3933602 R COG0438 Glycosyltransferase; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3932457..3933602) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249468.1 CDS STMDT12_C37720 NC_016860.1 3933703 3934512 R lipopolysaccharide core biosynthesis protein complement(3933703..3934512) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249469.1 CDS STMDT12_C37730 NC_016860.1 3934662 3935360 R COG1527 Archaeal/vacuolar-type H+-ATPase subunit C; lipopolysaccharide core biosynthesis protein complement(3934662..3935360) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249470.1 CDS STMDT12_C37740 NC_016860.1 3935383 3936393 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,2-glucosyltransferase complement(3935383..3936393) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249471.1 CDS STMDT12_C37750 NC_016860.1 3936411 3937424 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,3-galactosyltransferase complement(3936411..3937424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249472.1 CDS rfaB NC_016860.1 3937430 3938509 R COG0438 Glycosyltransferase; lipopolysaccharide 1,6-galactosyltransferase complement(3937430..3938509) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249473.1 CDS STMDT12_C37770 NC_016860.1 3938579 3938788 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative inner membrane protein complement(3938579..3938788) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249474.1 CDS STMDT12_C37780 NC_016860.1 3938844 3939641 R lipopolysaccharide core biosynthesis protein RfaP complement(3938844..3939641) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249475.1 CDS STMDT12_C37790 NC_016860.1 3939634 3940758 R COG0438 Glycosyltransferase; lipopolysaccharide core biosynthesis protein complement(3939634..3940758) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249476.1 CDS STMDT12_C37800 NC_016860.1 3940755 3941789 R COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide core biosynthesis protein complement(3940755..3941789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249477.1 CDS STMDT12_C37810 NC_016860.1 3942234 3943511 D COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 3942234..3943511 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249478.1 CDS coaD NC_016860.1 3943520 3943999 D COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 3943520..3943999 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249479.1 CDS STMDT12_C37830 NC_016860.1 3944027 3944836 R COG0266 Formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycosylase complement(3944027..3944836) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249480.1 CDS rpmG NC_016860.1 3944934 3945101 R COG0267 Ribosomal protein L33; 50S ribosomal protein L33 complement(3944934..3945101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249481.1 CDS rpmB NC_016860.1 3945122 3945358 R COG0227 Ribosomal protein L28; 50S ribosomal protein L28 complement(3945122..3945358) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249482.1 CDS radC NC_016860.1 3945576 3946241 R COG2003 DNA repair proteins; DNA repair protein RadC complement(3945576..3946241) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249483.1 CDS STMDT12_C37870 NC_016860.1 3946417 3947637 D COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3946417..3947637 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249484.1 CDS dut NC_016860.1 3947618 3948073 D COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 3947618..3948073 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249485.1 CDS slmA NC_016860.1 3948181 3948777 D COG1309 Transcriptional regulator; nucleoid occlusion protein 3948181..3948777 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249486.1 CDS pyrE NC_016860.1 3948855 3949496 R COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase complement(3948855..3949496) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249487.1 CDS rph NC_016860.1 3949575 3950291 R COG0689 RNase PH; ribonuclease PH complement(3949575..3950291) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249488.1 CDS STMDT12_C37920 NC_016860.1 3950417 3951280 D COG1561 Uncharacterized stress-induced protein; hypothetical protein 3950417..3951280 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249489.1 CDS STMDT12_C37930 NC_016860.1 3951330 3952232 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(3951330..3952232) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249490.1 CDS STMDT12_C37940 NC_016860.1 3952306 3953187 D COG0491 Zn-dependent hydrolases, including glyoxylases; putative Zn-dependent hydrolase 3952306..3953187 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249491.1 CDS STMDT12_C37950 NC_016860.1 3953438 3954055 D COG2860 Predicted membrane protein; inner membrane protein YicG 3953438..3954055 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249492.1 CDS ligB NC_016860.1 3954052 3955737 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigB complement(3954052..3955737) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249493.1 CDS gmk NC_016860.1 3955994 3956617 D COG0194 Guanylate kinase; guanylate kinase 3955994..3956617 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249494.1 CDS rpoZ NC_016860.1 3956672 3956947 D COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 3956672..3956947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249495.1 CDS spoT NC_016860.1 3956966 3959077 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 3956966..3959077 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249496.1 CDS STMDT12_C38000 NC_016860.1 3959082 3959771 D COG0566 rRNA methylases; tRNA guanosine-2'-O-methyltransferase 3959082..3959771 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249497.1 CDS STMDT12_C38010 NC_016860.1 3959777 3961858 D COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 3959777..3961858 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249498.1 CDS STMDT12_C38020 NC_016860.1 3961861 3962712 R putative cytoplasmic protein complement(3961861..3962712) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249499.1 CDS STMDT12_C38030 NC_016860.1 3962715 3963920 R COG0786 Na+/glutamate symporter; sodium/glutamate symporter complement(3962715..3963920) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249500.1 CDS STMDT12_C38040 NC_016860.1 3964148 3965539 D COG2233 Xanthine/uracil permeases; uracil-xanthine permease 3964148..3965539 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249501.1 CDS STMDT12_C38050 NC_016860.1 3965660 3967369 D putative inner membrane protein 3965660..3967369 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249502.1 CDS STMDT12_C38060 NC_016860.1 3967472 3969790 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-xylosidase complement(3967472..3969790) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249503.1 CDS STMDT12_C38070 NC_016860.1 3969802 3971184 R COG2211 Na+/melibiose symporter and related transporters; putative transport protein complement(3969802..3971184) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249504.1 CDS STMDT12_C38080 NC_016860.1 3971883 3972227 R hypothetical protein complement(3971883..3972227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249505.1 CDS STMDT12_C38090 NC_016860.1 3972905 3974095 D COG3950 Predicted ATP-binding protein involved in virulence; putative frameshift mutation; ATP-binding protein 3972905..3974095 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249506.1 CDS STMDT12_C38100 NC_016860.1 3974095 3974442 D putative frameshift mutation; ATP-binding protein 3974095..3974442 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249507.1 CDS STMDT12_C38110 NC_016860.1 3974674 3975666 D COG3943 Virulence protein; virulence protein 3974674..3975666 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249508.1 CDS STMDT12_C38120 NC_016860.1 3975778 3975951 R COG2963 Transposase and inactivated derivatives; ISxac3 transposase complement(3975778..3975951) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249509.1 CDS STMDT12_C38130 NC_016860.1 3976965 3977582 D RmbA 3976965..3977582 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249510.1 CDS STMDT12_C38140 NC_016860.1 3977717 3980524 D COG3468 Type V secretory pathway, adhesin AidA; putative autotransported protein 3977717..3980524 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249511.1 CDS STMDT12_C38150 NC_016860.1 3980619 3981101 R putative inner membrane protein complement(3980619..3981101) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249512.1 CDS STMDT12_C38160 NC_016860.1 3981094 3981858 R COG3710 DNA-binding winged-HTH domains; transcriptional regulator C complement(3981094..3981858) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249513.1 CDS STMDT12_C38170 NC_016860.1 3982735 3983415 D COG1335 Amidases related to nicotinamidase; SlsA 3982735..3983415 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249514.1 CDS STMDT12_C38180 NC_016860.1 3983644 3984123 R putative inner membrane protein complement(3983644..3984123) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249515.1 CDS STMDT12_C38190 NC_016860.1 3984324 3984416 R hypothetical protein complement(3984324..3984416) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249516.1 CDS STMDT12_C38200 NC_016860.1 3984438 3987164 R COG0474 Cation transport ATPase; Mg2+ transport protein complement(3984438..3987164) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249517.1 CDS STMDT12_C38210 NC_016860.1 3987384 3988079 R COG1285 Uncharacterized membrane protein; Mg2+ transport protein complement(3987384..3988079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249518.1 CDS STMDT12_C38220 NC_016860.1 3988543 3989490 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; carboxylate/amino acid/amine transporter 3988543..3989490 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249519.1 CDS STMDT12_C38230 NC_016860.1 3989533 3990474 R hypothetical protein complement(3989533..3990474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249520.1 CDS STMDT12_C38240 NC_016860.1 3990710 3991453 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein complement(3990710..3991453) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249521.1 CDS STMDT12_C38250 NC_016860.1 3991440 3992549 R COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; putative pyridoxal phosphate-dependent enzyme complement(3991440..3992549) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249522.1 CDS STMDT12_C38260 NC_016860.1 3992553 3993410 R COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; mannose/fructose/sorbose family PTS system IID protein complement(3992553..3993410) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249523.1 CDS STMDT12_C38270 NC_016860.1 3993410 3994159 R COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; sorbose-specific PTS system IIC protein complement(3993410..3994159) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249524.1 CDS STMDT12_C38280 NC_016860.1 3994305 3994790 R COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; putative PTS system IIB protein complement(3994305..3994790) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249525.1 CDS STMDT12_C38290 NC_016860.1 3994801 3995226 R COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; fructose-specific PTS system IIA protein complement(3994801..3995226) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249526.1 CDS STMDT12_C38300 NC_016860.1 3995445 3998243 R COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; sigma-54 dependent transcriptional regulator complement(3995445..3998243) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249527.1 CDS STMDT12_C38310 NC_016860.1 3998440 3998733 D hypothetical protein 3998440..3998733 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249528.1 CDS STMDT12_C38320 NC_016860.1 3998839 4000221 D COG2723 Beta-glucosidase/6-phospho-beta- glucosidase/beta- galactosidase; beta-glucosidase 3998839..4000221 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249529.1 CDS nepI NC_016860.1 4000281 4001474 R COG2814 Arabinose efflux permease; ribonucleoside transporter complement(4000281..4001474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249530.1 CDS STMDT12_C38340 NC_016860.1 4001690 4002049 D COG4737 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 4001690..4002049 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249531.1 CDS STMDT12_C38350 NC_016860.1 4002033 4002356 D COG2944 Predicted transcriptional regulator; DNA-binding protein 4002033..4002356 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249532.1 CDS STMDT12_C38360 NC_016860.1 4002447 4002716 R COG1925 Phosphotransferase system, HPr-related proteins; putative PTS system phosphocarrier protein complement(4002447..4002716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249533.1 CDS STMDT12_C38370 NC_016860.1 4002726 4003586 R COG0191 Fructose/tagatose bisphosphate aldolase; putative fructose-1,6-bisphosphate aldolase complement(4002726..4003586) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249534.1 CDS STMDT12_C38380 NC_016860.1 4003649 4005133 R COG1070 Sugar (pentulose and hexulose) kinases; putative sugar kinase complement(4003649..4005133) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249535.1 CDS STMDT12_C38390 NC_016860.1 4005126 4006484 R COG3775 Phosphotransferase system, galactitol-specific IIC component; galactitol-specific PTS system IIC protein complement(4005126..4006484) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249536.1 CDS STMDT12_C38400 NC_016860.1 4006560 4006847 R COG3414 Phosphotransferase system, galactitol-specific IIB component; putative PTS system IIB protein complement(4006560..4006847) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249537.1 CDS STMDT12_C38410 NC_016860.1 4006844 4007317 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); putative PTS system EIIA protein complement(4006844..4007317) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249538.1 CDS STMDT12_C38420 NC_016860.1 4007335 4007817 R COG2188 Transcriptional regulators; genomic island insertion; GntR family transcriptional regulator complement(4007335..4007817) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249539.1 CDS STMDT12_C38430 NC_016860.1 4007904 4008179 D COG3677 Transposase and inactivated derivatives; insertion element IS1 protein InsA 4007904..4008179 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249540.1 CDS STMDT12_C38440 NC_016860.1 4008098 4008601 D COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 4008098..4008601 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249541.1 CDS STMDT12_C38450 NC_016860.1 4008595 4009548 R hypothetical protein complement(4008595..4009548) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249542.1 CDS STMDT12_C38460 NC_016860.1 4009929 4010159 D COG4456 Virulence-associated protein and related proteins; VagC 4009929..4010159 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249543.1 CDS STMDT12_C38470 NC_016860.1 4010156 4010572 D COG1487 Predicted nucleic acid-binding protein, contains PIN domain; VagD 4010156..4010572 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249544.1 CDS STMDT12_C38480 NC_016860.1 4010647 4012212 D COG3593 Predicted ATP-dependent endonuclease of the OLD family; putative OLD family ATP-dependent endonuclease 4010647..4012212 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249545.1 CDS STMDT12_C38490 NC_016860.1 4012197 4013219 D COG0210 Superfamily I DNA and RNA helicases; hypothetical protein 4012197..4013219 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249546.1 CDS STMDT12_C38500 NC_016860.1 4013275 4013439 R hypothetical protein complement(4013275..4013439) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249547.1 CDS STMDT12_C38510 NC_016860.1 4013473 4013976 R COG1662 Transposase and inactivated derivatives, IS1 family; insertion element IS1 protein insB complement(4013473..4013976) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249548.1 CDS STMDT12_C38520 NC_016860.1 4013895 4014170 R COG3677 Transposase and inactivated derivatives; insertion element IS1 protein complement(4013895..4014170) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249549.1 CDS STMDT12_C38530 NC_016860.1 4014550 4016748 R COG1629 Outer membrane receptor proteins, mostly Fe transport; Aerobactin siderophore ferric receptor protein IutA complement(4014550..4016748) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249550.1 CDS STMDT12_C38540 NC_016860.1 4016833 4018110 R COG3486 Lysine/ornithine N-monooxygenase; L-lysine 6-monooxygenase complement(4016833..4018110) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249551.1 CDS STMDT12_C38550 NC_016860.1 4018107 4019849 R COG4264 Siderophore synthetase component; IucC complement(4018107..4019849) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249552.1 CDS STMDT12_C38560 NC_016860.1 4019849 4020796 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Aerobactin siderophore biosynthesis protein IucB complement(4019849..4020796) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249553.1 CDS STMDT12_C38570 NC_016860.1 4020797 4022521 R COG4264 Siderophore synthetase component; Aerobactin siderophore biosynthesis protein IucA complement(4020797..4022521) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249554.1 CDS STMDT12_C38580 NC_016860.1 4022657 4023850 D COG0477 Permeases of the major facilitator superfamily; transposon function, ShiF, putative 4022657..4023850 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249555.1 CDS STMDT12_C38590 NC_016860.1 4024230 4024610 R COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB complement(4024230..4024610) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249556.1 CDS STMDT12_C38600 NC_016860.1 4024951 4025385 R COG0148 Enolase; enolase complement(4024951..4025385) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249557.1 CDS STMDT12_C38610 NC_016860.1 4025853 4026710 R COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; SitD complement(4025853..4026710) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249558.1 CDS STMDT12_C38620 NC_016860.1 4026707 4027564 R COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; SitC complement(4026707..4027564) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249559.1 CDS STMDT12_C38630 NC_016860.1 4027561 4028388 R COG1121 ABC-type Mn/Zn transport systems, ATPase component; SitB complement(4027561..4028388) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249560.1 CDS STMDT12_C38640 NC_016860.1 4028388 4029302 R COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; SitA complement(4028388..4029302) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249561.1 CDS STMDT12_C38650 NC_016860.1 4029658 4029933 D COG3677 Transposase and inactivated derivatives; insertion element IS1 protein 4029658..4029933 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249562.1 CDS STMDT12_C38660 NC_016860.1 4029852 4030355 D COG1662 Transposase and inactivated derivatives, IS1 family; insertion element IS1 protein insB 4029852..4030355 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249563.1 CDS STMDT12_C38670 NC_016860.1 4030535 4030786 R hypothetical protein complement(4030535..4030786) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249564.1 CDS STMDT12_C38680 NC_016860.1 4031182 4031538 R COG4584 Transposase and inactivated derivatives; hypothetical protein complement(4031182..4031538) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249565.1 CDS STMDT12_C38690 NC_016860.1 4032284 4033261 D replication protein A 4032284..4033261 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249566.1 CDS STMDT12_C38700 NC_016860.1 4033546 4034286 R COG0582 Integrase; integrase complement(4033546..4034286) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249567.1 CDS STMDT12_C38710 NC_016860.1 4034656 4034742 R hypothetical protein complement(4034656..4034742) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249568.1 CDS STMDT12_C38720 NC_016860.1 4034805 4035062 D hypothetical protein 4034805..4035062 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249569.1 CDS STMDT12_C38730 NC_016860.1 4035018 4035200 R COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein complement(4035018..4035200) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249570.1 CDS STMDT12_C38740 NC_016860.1 4035449 4035571 D hypothetical protein 4035449..4035571 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249571.1 CDS STMDT12_C38750 NC_016860.1 4035732 4036901 D hypothetical protein 4035732..4036901 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249572.1 CDS STMDT12_C38760 NC_016860.1 4037496 4037771 R COG3668 Plasmid stabilization system protein; hypothetical protein complement(4037496..4037771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249573.1 CDS STMDT12_C38770 NC_016860.1 4037771 4038055 R hypothetical protein complement(4037771..4038055) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249574.1 CDS STMDT12_C38780 NC_016860.1 4038660 4039412 D COG1414 Transcriptional regulator; putative HTH-type transcriptional regulator yfaX 4038660..4039412 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249575.1 CDS STMDT12_C38790 NC_016860.1 4039458 4040423 R 2-keto-3-deoxygluconate permease complement(4039458..4040423) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249576.1 CDS STMDT12_C38800 NC_016860.1 4040456 4040836 R COG0251 Putative translation initiation inhibitor, yjgF family; translation initiation inhibitor complement(4040456..4040836) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249577.1 CDS STMDT12_C38810 NC_016860.1 4040861 4041751 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(4040861..4041751) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249578.1 CDS STMDT12_C38820 NC_016860.1 4041984 4042178 R hypothetical protein complement(4041984..4042178) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249579.1 CDS STMDT12_C38830 NC_016860.1 4042203 4042334 D COG1064 Zn-dependent alcohol dehydrogenases; oxidoreductase 4042203..4042334 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249580.1 CDS STMDT12_C38840 NC_016860.1 4042365 4042592 D COG1064 Zn-dependent alcohol dehydrogenases; oxidoreductase 4042365..4042592 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249581.1 CDS STMDT12_C38850 NC_016860.1 4042735 4043601 D COG1175 ABC-type sugar transport systems, permease components; SN-glycerol-3-phosphate transport system permease protein ugpA 4042735..4043601 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249582.1 CDS STMDT12_C38860 NC_016860.1 4043591 4044478 D COG0395 ABC-type sugar transport system, permease component; L-arabinose transport system permease protein araQ 4043591..4044478 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249583.1 CDS STMDT12_C38870 NC_016860.1 4044489 4045313 D COG1409 Predicted phosphohydrolases; protein icc 4044489..4045313 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249584.1 CDS STMDT12_C38880 NC_016860.1 4045319 4046392 D COG3839 ABC-type sugar transport systems, ATPase components; sn-glycerol-3-phosphate ABC transporter ATP-binding protein 4045319..4046392 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249585.1 CDS STMDT12_C38890 NC_016860.1 4046385 4047695 D COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate-binding periplasmic protein 4046385..4047695 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249586.1 CDS STMDT12_C38900 NC_016860.1 4047754 4048047 R ISEc13 transposase complement(4047754..4048047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249587.1 CDS STMDT12_C38910 NC_016860.1 4048139 4048312 R COG4644 Transposase and inactivated derivatives, TnpA family; hypothetical protein complement(4048139..4048312) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249590.1 CDS STMDT12_C38940 NC_016860.1 4049282 4049590 R COG2963 Transposase and inactivated derivatives; putative transposase OrfA protein of insertion sequence IS629 complement(4049282..4049590) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249591.1 CDS STMDT12_C38950 NC_016860.1 4049615 4050319 D COG3316 Transposase and inactivated derivatives; transposase InsB4 for insertion sequence IS26 4049615..4050319 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249592.1 CDS STMDT12_C38960 NC_016860.1 4050353 4050907 R glucose-1-phosphatase precursor complement(4050353..4050907) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249593.1 CDS STMDT12_C38970 NC_016860.1 4051029 4051514 R hypothetical protein complement(4051029..4051514) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249594.1 CDS STMDT12_C38980 NC_016860.1 4051539 4052024 R COG0526 Thiol-disulfide isomerase and thioredoxins; hypothetical protein complement(4051539..4052024) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249595.1 CDS STMDT12_C38990 NC_016860.1 4052011 4052706 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; putative ABC transporter system ATP-binding component complement(4052011..4052706) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249596.1 CDS STMDT12_C39000 NC_016860.1 4052711 4053841 R COG0577 ABC-type antimicrobial peptide transport system, permease component; hypothetical protein complement(4052711..4053841) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249597.1 CDS STMDT12_C39010 NC_016860.1 4053831 4055114 R COG0577 ABC-type antimicrobial peptide transport system, permease component; high affinity Fe+2 binding protein permease component complement(4053831..4055114) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249598.1 CDS STMDT12_C39020 NC_016860.1 4055117 4056496 R COG4393 Predicted membrane protein; high affinity Fe+2 binding protein membrane component complement(4055117..4056496) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249599.1 CDS STMDT12_C39030 NC_016860.1 4056600 4057127 R COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport; hypothetical protein complement(4056600..4057127) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249600.1 CDS STMDT12_C39040 NC_016860.1 4057168 4059054 R COG0672 High-affinity Fe2+/Pb2+ permease; high-affinity Fe2+/Pb2+ permease complement(4057168..4059054) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249601.1 CDS STMDT12_C39050 NC_016860.1 4059401 4060162 R COG2869 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC; Na(+)-translocating NADH-quinone reductase subunit C complement(4059401..4060162) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249602.1 CDS STMDT12_C39060 NC_016860.1 4060399 4060905 R COG0526 Thiol-disulfide isomerase and thioredoxins; secreted copper-sensitivity suppressor D complement(4060399..4060905) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249603.1 CDS STMDT12_C39070 NC_016860.1 4060895 4061053 R COG1651 Protein-disulfide isomerase; hypothetical protein complement(4060895..4061053) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249604.1 CDS STMDT12_C39080 NC_016860.1 4061516 4061791 D COG3677 Transposase and inactivated derivatives; putative IS1 repressor protein InsA 4061516..4061791 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249605.1 CDS STMDT12_C39090 NC_016860.1 4061710 4062213 D COG1662 Transposase and inactivated derivatives, IS1 family; transposase 4061710..4062213 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249606.1 CDS STMDT12_C39100 NC_016860.1 4062380 4062973 D COG1309 Transcriptional regulator; hypothetical protein 4062380..4062973 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249607.1 CDS STMDT12_C39110 NC_016860.1 4063086 4064291 R COG0477 Permeases of the major facilitator superfamily; tetracycline resistance protein complement(4063086..4064291) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249608.1 CDS STMDT12_C39120 NC_016860.1 4064373 4064996 D COG1309 Transcriptional regulator; tetracycline repressor protein TetR 4064373..4064996 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249609.1 CDS STMDT12_C39130 NC_016860.1 4064974 4065660 R COG0640 Predicted transcriptional regulators; hypothetical protein complement(4064974..4065660) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249610.1 CDS STMDT12_C39140 NC_016860.1 4065668 4066165 R hypothetical protein complement(4065668..4066165) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249611.1 CDS STMDT12_C39150 NC_016860.1 4066307 4066810 R COG1662 Transposase and inactivated derivatives, IS1 family; insertion element is1 2/3 protein insb complement(4066307..4066810) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249612.1 CDS STMDT12_C39160 NC_016860.1 4066729 4067004 R COG3677 Transposase and inactivated derivatives; putative IS1 repressor protein InsA complement(4066729..4067004) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249613.1 CDS STMDT12_C39170 NC_016860.1 4067283 4067942 D COG4845 Chloramphenicol O-acetyltransferase; chloramphenicol acetyltransferase 4067283..4067942 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249614.1 CDS STMDT12_C39180 NC_016860.1 4068143 4068520 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein complement(4068143..4068520) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249615.1 CDS STMDT12_C39190 NC_016860.1 4068587 4071553 R COG4644 Transposase and inactivated derivatives, TnpA family; Tn3 family transposase complement(4068587..4071553) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249616.1 CDS STMDT12_C39200 NC_016860.1 4071556 4072116 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; transposon Tn21 resolvase TnpR complement(4071556..4072116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249617.1 CDS STMDT12_C39210 NC_016860.1 4072242 4072826 R transposition modulator TnpM complement(4072242..4072826) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249618.1 CDS STMDT12_C39220 NC_016860.1 4072795 4073808 R COG0582 Integrase; IntI1 complement(4072795..4073808) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249619.1 CDS STMDT12_C39230 NC_016860.1 4073973 4074848 D COG2602 Beta-lactamase class D; beta-lactamase OXA-1 4073973..4074848 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249620.1 CDS STMDT12_C39240 NC_016860.1 4074961 4075752 D COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein 4074961..4075752 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249621.1 CDS STMDT12_C39250 NC_016860.1 4075916 4076263 D COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein 4075916..4076263 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249622.1 CDS STMDT12_C39260 NC_016860.1 4076257 4077096 D COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 4076257..4077096 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249623.1 CDS STMDT12_C39270 NC_016860.1 4077026 4077187 R hypothetical protein complement(4077026..4077187) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249624.1 CDS STMDT12_C39280 NC_016860.1 4077224 4077724 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 4077224..4077724 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249625.1 CDS STMDT12_C39290 NC_016860.1 4077900 4078682 R COG1484 DNA replication protein; IstB complement(4077900..4078682) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249626.1 CDS STMDT12_C39300 NC_016860.1 4078672 4080195 R COG4584 Transposase and inactivated derivatives; transposase for insertion sequences is1326 complement(4078672..4080195) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249627.1 CDS STMDT12_C39310 NC_016860.1 4080318 4081862 D COG2801 Transposase and inactivated derivatives; InsG 4080318..4081862 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249628.1 CDS STMDT12_C39320 NC_016860.1 4081913 4082773 R COG1219 ATP-dependent protease Clp, ATPase subunit; TniB protein complement(4081913..4082773) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249629.1 CDS STMDT12_C39330 NC_016860.1 4082776 4084455 R COG2801 Transposase and inactivated derivatives; putative transposase TniA complement(4082776..4084455) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249630.1 CDS STMDT12_C39340 NC_016860.1 4084530 4085237 R COG2200 FOG: EAL domain; hypothetical protein complement(4084530..4085237) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249631.1 CDS STMDT12_C39350 NC_016860.1 4085234 4085470 R putative mercury resistance protein complement(4085234..4085470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249632.1 CDS STMDT12_C39360 NC_016860.1 4085467 4085829 R COG0789 Predicted transcriptional regulators; transcriptional regulator MerD complement(4085467..4085829) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249633.1 CDS STMDT12_C39370 NC_016860.1 4085847 4087541 R COG2608 Copper chaperone; putative mercuric reductase complement(4085847..4087541) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249634.1 CDS STMDT12_C39380 NC_016860.1 4087593 4088015 R putative mercury transport protein MerC complement(4087593..4088015) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249635.1 CDS STMDT12_C39390 NC_016860.1 4088051 4088326 R COG2608 Copper chaperone; mercury resistance operon protein MerP complement(4088051..4088326) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249636.1 CDS STMDT12_C39400 NC_016860.1 4088340 4088690 R putative mercuric transport protein complement(4088340..4088690) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249637.1 CDS STMDT12_C39410 NC_016860.1 4088762 4089196 D COG0789 Predicted transcriptional regulators; putative transcriptional regulator MerR 4088762..4089196 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249638.1 CDS STMDT12_C39420 NC_016860.1 4089303 4089806 R COG1662 Transposase and inactivated derivatives, IS1 family; insertion element IS1 protein insB complement(4089303..4089806) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249639.1 CDS STMDT12_C39430 NC_016860.1 4089725 4090000 R COG3677 Transposase and inactivated derivatives; insertion element IS1 protein complement(4089725..4090000) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249640.1 CDS STMDT12_C39440 NC_016860.1 4090051 4090293 R COG2188 Transcriptional regulators; genomic island insertion; GntR family transcriptional regulator complement(4090051..4090293) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249641.1 CDS STMDT12_C39450 NC_016860.1 4090646 4091098 R hypothetical protein complement(4090646..4091098) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249642.1 CDS uhpT NC_016860.1 4091291 4092682 R COG2271 Sugar phosphate permease; sugar phosphate antiporter complement(4091291..4092682) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249643.1 CDS STMDT12_C39470 NC_016860.1 4092825 4094153 R COG2271 Sugar phosphate permease; regulatory protein UhpC complement(4092825..4094153) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249644.1 CDS STMDT12_C39480 NC_016860.1 4094163 4095665 R COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; sensor kinase UhpB complement(4094163..4095665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249645.1 CDS STMDT12_C39490 NC_016860.1 4095665 4096255 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator UhpA complement(4095665..4096255) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249646.1 CDS STMDT12_C39500 NC_016860.1 4096330 4097343 R DeoX complement(4096330..4097343) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249647.1 CDS STMDT12_C39510 NC_016860.1 4097355 4098671 R COG0738 Fucose permease; L-fucose:H+ symporter permease complement(4097355..4098671) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249648.1 CDS STMDT12_C39520 NC_016860.1 4098702 4099622 R COG0524 Sugar kinases, ribokinase family; ribokinase complement(4098702..4099622) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249649.1 CDS STMDT12_C39530 NC_016860.1 4099947 4100732 D COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 4099947..4100732 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249650.1 CDS STMDT12_C39540 NC_016860.1 4100734 4101024 R COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 1 regulatory subunit complement(4100734..4101024) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249651.1 CDS STMDT12_C39550 NC_016860.1 4101028 4102716 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 1 catalytic subunit complement(4101028..4102716) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249652.1 CDS STMDT12_C39560 NC_016860.1 4103764 4104597 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; integral membrane protein 4103764..4104597 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249653.1 CDS emrD NC_016860.1 4104833 4105984 D COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein D 4104833..4105984 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249654.1 CDS STMDT12_C39580 NC_016860.1 4105911 4106996 R hypothetical protein complement(4105911..4106996) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249655.1 CDS STMDT12_C39590 NC_016860.1 4107060 4107998 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator DsdC complement(4107060..4107998) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249656.1 CDS STMDT12_C39600 NC_016860.1 4108209 4109546 D COG2610 H+/gluconate symporter and related permeases; permease DsdX 4108209..4109546 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249657.1 CDS STMDT12_C39610 NC_016860.1 4109564 4110886 D COG3048 D-serine dehydratase; D-serine dehydratase 4109564..4110886 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249658.1 CDS STMDT12_C39620 NC_016860.1 4110968 4111498 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); hypothetical protein complement(4110968..4111498) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249659.1 CDS STMDT12_C39630 NC_016860.1 4111495 4111857 R inner membrane protein YidG complement(4111495..4111857) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249660.1 CDS STMDT12_C39640 NC_016860.1 4111847 4112194 R COG2149 Predicted membrane protein; inner membrane protein YidH complement(4111847..4112194) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249661.1 CDS STMDT12_C39650 NC_016860.1 4112330 4112476 D hypothetical protein 4112330..4112476 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249662.1 CDS STMDT12_C39660 NC_016860.1 4112495 4112641 D hypothetical protein 4112495..4112641 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249663.1 CDS STMDT12_C39670 NC_016860.1 4112638 4114299 R COG2985 Predicted permease; hypothetical protein complement(4112638..4114299) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249664.1 CDS STMDT12_C39680 NC_016860.1 4114489 4114917 R COG0071 Molecular chaperone (small heat shock protein); heat shock chaperone IbpB complement(4114489..4114917) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249665.1 CDS STMDT12_C39690 NC_016860.1 4115027 4115440 R COG0071 Molecular chaperone (small heat shock protein); heat shock protein IbpA complement(4115027..4115440) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249666.1 CDS STMDT12_C39700 NC_016860.1 4115792 4116082 D COG5645 Predicted periplasmic lipoprotein; hypothetical protein 4115792..4116082 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249667.1 CDS STMDT12_C39710 NC_016860.1 4116084 4117310 R COG2319 FOG: WD40 repeat; putative cytoplasmic protein complement(4116084..4117310) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249668.1 CDS STMDT12_C39720 NC_016860.1 4117432 4118475 R COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; hypothetical protein complement(4117432..4118475) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249669.1 CDS STMDT12_C39730 NC_016860.1 4118472 4119029 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE complement(4118472..4119029) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249670.1 CDS STMDT12_C39740 NC_016860.1 4119026 4120957 R COG1138 Cytochrome c biogenesis factor; cytochrome c-type biogenesis protein CcmF complement(4119026..4120957) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249671.1 CDS STMDT12_C39750 NC_016860.1 4120954 4121433 R COG2332 Cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE complement(4120954..4121433) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249672.1 CDS STMDT12_C39760 NC_016860.1 4121430 4121642 R COG3114 Heme exporter protein D; heme exporter protein D complement(4121430..4121642) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249673.1 CDS STMDT12_C39770 NC_016860.1 4121639 4122376 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein complement(4121639..4122376) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249674.1 CDS STMDT12_C39780 NC_016860.1 4122428 4123084 R COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein B1 complement(4122428..4123084) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249675.1 CDS STMDT12_C39790 NC_016860.1 4123084 4123710 R COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA complement(4123084..4123710) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249676.1 CDS STMDT12_C39800 NC_016860.1 4123707 4125107 R COG1858 Cytochrome c peroxidase; cytochrome c peroxidase complement(4123707..4125107) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249677.1 CDS torD NC_016860.1 4125297 4125929 R COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone protein TorD complement(4125297..4125929) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249678.1 CDS STMDT12_C39820 NC_016860.1 4125922 4128474 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; trimethylamine N-oxide reductase subunit complement(4125922..4128474) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249679.1 CDS STMDT12_C39830 NC_016860.1 4128464 4129648 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein complement(4128464..4129648) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249680.1 CDS STMDT12_C39840 NC_016860.1 4129742 4130470 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator TorR 4129742..4130470 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249681.1 CDS STMDT12_C39850 NC_016860.1 4130443 4131483 R COG1879 ABC-type sugar transport system, periplasmic component; TMAO reductase system periplasmic protein TorT complement(4130443..4131483) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249682.1 CDS STMDT12_C39860 NC_016860.1 4131563 4134298 D COG0642 Signal transduction histidine kinase; hybrid two-component sensor kinase TorS 4131563..4134298 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249683.1 CDS STMDT12_C39870 NC_016860.1 4134324 4135616 R COG0477 Permeases of the major facilitator superfamily; D-galactonate transporter complement(4134324..4135616) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249684.1 CDS STMDT12_C39880 NC_016860.1 4135746 4136894 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; galactonate dehydratase complement(4135746..4136894) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249685.1 CDS STMDT12_C39890 NC_016860.1 4136891 4137508 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4136891..4137508) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249686.1 CDS STMDT12_C39900 NC_016860.1 4137492 4138370 R COG3734 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase complement(4137492..4138370) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249687.1 CDS STMDT12_C39910 NC_016860.1 4138367 4139056 R COG2186 Transcriptional regulators; galactonate operon transcriptional repressor complement(4138367..4139056) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249688.1 CDS STMDT12_C39920 NC_016860.1 4139317 4140162 R COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase complement(4139317..4140162) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249689.1 CDS STMDT12_C39930 NC_016860.1 4140468 4141730 D COG0477 Permeases of the major facilitator superfamily; putative membrane transport protein 4140468..4141730 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249690.1 CDS STMDT12_C39940 NC_016860.1 4141747 4142937 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; putative mandelate racemase 4141747..4142937 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249691.1 CDS STMDT12_C39950 NC_016860.1 4143052 4143948 D COG0583 Transcriptional regulator; putative LysR-family transcriptional regulator 4143052..4143948 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249692.1 CDS gyrB NC_016860.1 4143967 4146381 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B complement(4143967..4146381) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249693.1 CDS recF NC_016860.1 4146410 4147483 R COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein F complement(4146410..4147483) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249694.1 CDS STMDT12_C39980 NC_016860.1 4147631 4148731 R COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta complement(4147631..4148731) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249695.1 CDS dnaA NC_016860.1 4148736 4150136 R COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein complement(4148736..4150136) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249696.1 CDS rnpA NC_016860.1 4150954 4151313 D COG0594 RNase P protein component; ribonuclease P 4150954..4151313 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249697.1 CDS STMDT12_C40010 NC_016860.1 4151277 4151534 D COG0759 Uncharacterized conserved protein; hypothetical protein 4151277..4151534 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249698.1 CDS STMDT12_C40020 NC_016860.1 4151537 4153183 D COG0706 Preprotein translocase subunit YidC; putative inner membrane protein translocase component YidC 4151537..4153183 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249699.1 CDS trmE NC_016860.1 4153325 4154689 D COG0486 Predicted GTPase; tRNA modification GTPase TrmE 4153325..4154689 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249700.1 CDS STMDT12_C40040 NC_016860.1 4154945 4155439 D putative frameshift mutation; putative recombinase 4154945..4155439 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249701.1 CDS STMDT12_C40050 NC_016860.1 4155455 4156165 D putative frameshift mutation; putative recombinase 4155455..4156165 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249702.1 CDS STMDT12_C40060 NC_016860.1 4156200 4156427 R hypothetical protein complement(4156200..4156427) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249703.1 CDS STMDT12_C40070 NC_016860.1 4156490 4157452 D putative inner membrane protein 4156490..4157452 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249704.1 CDS STMDT12_C40080 NC_016860.1 4157452 4158387 D COG3344 Retron-type reverse transcriptase; putative reverse transcriptase 4157452..4158387 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249705.1 CDS STMDT12_C40090 NC_016860.1 4159189 4160376 D COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtL 4159189..4160376 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249706.1 CDS STMDT12_C40100 NC_016860.1 4160345 4161304 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator YidZ 4160345..4161304 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249707.1 CDS STMDT12_C40110 NC_016860.1 4161462 4162217 D COG2091 Phosphopantetheinyl transferase; putative phosphopantetheinyl transferase 4161462..4162217 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249708.1 CDS STMDT12_C40120 NC_016860.1 4162235 4162801 D COG0431 Predicted flavoprotein; protein YieF 4162235..4162801 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249709.1 CDS STMDT12_C40130 NC_016860.1 4162846 4164183 R COG2252 Permeases; inner membrane protein YicO complement(4162846..4164183) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249710.1 CDS STMDT12_C40140 NC_016860.1 4164352 4165017 D COG0637 Predicted phosphatase/phosphohexomutase; 6-phosphogluconate phosphatase 4164352..4165017 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249711.1 CDS STMDT12_C40150 NC_016860.1 4165112 4165837 R COG0704 Phosphate uptake regulator; transcriptional regulator PhoU complement(4165112..4165837) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249712.1 CDS pstB NC_016860.1 4165852 4166661 R COG1117 ABC-type phosphate transport system, ATPase component; phosphate ABC transporter ATP-binding protein complement(4165852..4166661) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249713.1 CDS pstA NC_016860.1 4166712 4167602 R COG0581 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PtsA complement(4166712..4167602) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249714.1 CDS pstC NC_016860.1 4167602 4168561 R COG0573 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease complement(4167602..4168561) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249715.1 CDS STMDT12_C40190 NC_016860.1 4168697 4169737 R COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter substrate-binding protein complement(4168697..4169737) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249716.1 CDS STMDT12_C40200 NC_016860.1 4169904 4171277 R COG1445 Phosphotransferase system fructose-specific component IIB; hypothetical protein complement(4169904..4171277) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249717.1 CDS STMDT12_C40210 NC_016860.1 4171326 4172144 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(4171326..4172144) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249718.1 CDS STMDT12_C40220 NC_016860.1 4172239 4173996 D COG4533 ABC-type uncharacterized transport system, periplasmic component; putative dipeptide/oligopeptide/nickel ABC transporter substrate binding protein 4172239..4173996 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249719.1 CDS STMDT12_C40230 NC_016860.1 4174147 4175976 R COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase complement(4174147..4175976) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249720.1 CDS glmU NC_016860.1 4176165 4177535 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4176165..4177535) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249721.1 CDS STMDT12_C40250 NC_016860.1 4177855 4178553 R COG0670 Integral membrane protein, interacts with FtsH; putative permease complement(4177855..4178553) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249722.1 CDS atpC NC_016860.1 4178783 4179196 R COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon complement(4178783..4179196) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249723.1 CDS STMDT12_C40270 NC_016860.1 4179223 4180605 R COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta complement(4179223..4180605) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249724.1 CDS STMDT12_C40280 NC_016860.1 4180632 4181495 R COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma complement(4180632..4181495) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249725.1 CDS STMDT12_C40290 NC_016860.1 4181546 4183087 R COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha complement(4181546..4183087) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249726.1 CDS STMDT12_C40300 NC_016860.1 4183100 4183633 R COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta complement(4183100..4183633) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249727.1 CDS STMDT12_C40310 NC_016860.1 4183648 4184118 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B complement(4183648..4184118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249728.1 CDS STMDT12_C40320 NC_016860.1 4184178 4184417 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C complement(4184178..4184417) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249729.1 CDS STMDT12_C40330 NC_016860.1 4184464 4185279 R COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A complement(4184464..4185279) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249730.1 CDS STMDT12_C40340 NC_016860.1 4185288 4185668 R COG3312 F0F1-type ATP synthase, subunit I; F0F1 ATP synthase subunit I complement(4185288..4185668) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249731.1 CDS gidB NC_016860.1 4186284 4186907 R COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB complement(4186284..4186907) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249732.1 CDS STMDT12_C40360 NC_016860.1 4187010 4188899 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4187010..4188899) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249733.1 CDS STMDT12_C40370 NC_016860.1 4189278 4189721 R COG0716 Flavodoxins; flavodoxin complement(4189278..4189721) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249734.1 CDS STMDT12_C40380 NC_016860.1 4189811 4190269 R COG1522 Transcriptional regulators; DNA-binding transcriptional regulator AsnC complement(4189811..4190269) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249735.1 CDS asnA NC_016860.1 4190420 4191412 D COG2502 Asparagine synthetase A; asparagine synthetase A 4190420..4191412 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249736.1 CDS yieM NC_016860.1 4191417 4192868 R COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein complement(4191417..4192868) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249737.1 CDS STMDT12_C40410 NC_016860.1 4192862 4194358 R COG0714 MoxR-like ATPases; regulatory ATPase RavA complement(4192862..4194358) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249738.1 CDS trkD NC_016860.1 4194706 4196574 D COG3158 K+ transporter; potassium transport protein Kup 4194706..4196574 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249739.1 CDS STMDT12_C40430 NC_016860.1 4196771 4197190 D COG1869 ABC-type ribose transport system, auxiliary component; D-ribose pyranase 4196771..4197190 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249740.1 CDS STMDT12_C40440 NC_016860.1 4197153 4198703 D COG1129 ABC-type sugar transport system, ATPase component; D-ribose ABC transporter ATP-binding protein 4197153..4198703 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249741.1 CDS rbsC NC_016860.1 4198709 4199674 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ribose ABC transporter permease 4198709..4199674 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249742.1 CDS STMDT12_C40460 NC_016860.1 4199699 4200589 D COG1879 ABC-type sugar transport system, periplasmic component; D-ribose ABC transporter substrate binding protein RbsB 4199699..4200589 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249743.1 CDS STMDT12_C40470 NC_016860.1 4200723 4201652 D COG0524 Sugar kinases, ribokinase family; ribokinase 4200723..4201652 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249744.1 CDS STMDT12_C40480 NC_016860.1 4201665 4202654 D COG1609 Transcriptional regulators; transcriptional repressor RbsR 4201665..4202654 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249745.1 CDS STMDT12_C40490 NC_016860.1 4202620 4204047 R COG0477 Permeases of the major facilitator superfamily; putative transmembrane efflux protein complement(4202620..4204047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249746.1 CDS STMDT12_C40500 NC_016860.1 4204059 4204763 R COG2186 Transcriptional regulators; putative transcriptional regulator complement(4204059..4204763) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249747.1 CDS STMDT12_C40510 NC_016860.1 4210657 4211493 R COG0583 Transcriptional regulator; transcriptional regulator HdfR complement(4210657..4211493) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249748.1 CDS STMDT12_C40520 NC_016860.1 4211612 4211950 D COG3085 Uncharacterized protein conserved in bacteria; hypothetical protein 4211612..4211950 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249749.1 CDS STMDT12_C40530 NC_016860.1 4211975 4213495 R COG0606 Predicted ATPase with chaperone activity; putative ATP-dependent protease complement(4211975..4213495) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249750.1 CDS STMDT12_C40540 NC_016860.1 4213582 4213767 D hypothetical protein 4213582..4213767 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249751.1 CDS STMDT12_C40550 NC_016860.1 4214085 4215731 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 2 catalytic subunit 4214085..4215731 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249752.1 CDS ilvM NC_016860.1 4215728 4215991 D COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit; acetolactate synthase 2 regulatory subunit 4215728..4215991 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249753.1 CDS STMDT12_C40570 NC_016860.1 4216009 4216938 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 4216009..4216938 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249754.1 CDS STMDT12_C40580 NC_016860.1 4217099 4218949 D COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxy-acid dehydratase 4217099..4218949 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249755.1 CDS ilvA NC_016860.1 4218949 4220496 D COG1171 Threonine dehydratase; threonine dehydratase 4218949..4220496 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249756.1 CDS STMDT12_C40600 NC_016860.1 4220780 4221097 D COG4679 Phage-related protein; hypothetical protein 4220780..4221097 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249757.1 CDS STMDT12_C40610 NC_016860.1 4221094 4221435 D COG5606 Uncharacterized conserved small protein; hypothetical protein 4221094..4221435 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249758.1 CDS STMDT12_C40620 NC_016860.1 4221438 4222325 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator IlvY complement(4221438..4222325) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249759.1 CDS STMDT12_C40630 NC_016860.1 4222489 4223964 D COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 4222489..4223964 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249760.1 CDS ppiC NC_016860.1 4224056 4224337 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase C complement(4224056..4224337) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249761.1 CDS STMDT12_C40650 NC_016860.1 4224441 4224689 D hypothetical protein 4224441..4224689 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249762.1 CDS STMDT12_C40660 NC_016860.1 4224665 4224775 D putative inner membrane protein 4224665..4224775 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249763.1 CDS STMDT12_C40670 NC_016860.1 4224875 4226899 D COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase Rep 4224875..4226899 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249764.1 CDS STMDT12_C40680 NC_016860.1 4226939 4228420 R COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase complement(4226939..4228420) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249765.1 CDS STMDT12_C40690 NC_016860.1 4228539 4229804 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlB complement(4228539..4229804) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249766.1 CDS trxA NC_016860.1 4229948 4230277 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 4229948..4230277 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249767.1 CDS rho NC_016860.1 4230696 4231955 D COG1158 Transcription termination factor; transcription termination factor Rho 4230696..4231955 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249768.1 CDS STMDT12_C40720 NC_016860.1 4232185 4233288 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 4232185..4233288 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249769.1 CDS STMDT12_C40730 NC_016860.1 4233300 4234346 D COG3765 Chain length determinant protein; lipopolysaccharide biosynthesis protein WzzE 4233300..4234346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249770.1 CDS STMDT12_C40740 NC_016860.1 4234447 4235532 D COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4234447..4235532 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249771.1 CDS wecC NC_016860.1 4235529 4236791 D COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; UDP-N-acetyl-D-mannosamine dehydrogenase 4235529..4236791 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249772.1 CDS STMDT12_C40760 NC_016860.1 4236791 4237858 D COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4236791..4237858 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249773.1 CDS STMDT12_C40770 NC_016860.1 4237891 4238115 D COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 4237891..4238115 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249774.1 CDS STMDT12_C40780 NC_016860.1 4238093 4238770 D TDP-fucosamine acetyltransferase 4238093..4238770 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249775.1 CDS STMDT12_C40790 NC_016860.1 4238775 4239905 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4238775..4239905 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249776.1 CDS STMDT12_C40800 NC_016860.1 4239907 4241157 D COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; polysaccharide biosynthesis protein 4239907..4241157 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249777.1 CDS STMDT12_C40810 NC_016860.1 4241154 4242233 D 4-alpha-L-fucosyltransferase 4241154..4242233 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249778.1 CDS STMDT12_C40820 NC_016860.1 4242230 4243588 D putative common antigen polymerase 4242230..4243588 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249779.1 CDS STMDT12_C40830 NC_016860.1 4243585 4244325 D COG1922 Teichoic acid biosynthesis proteins; putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4243585..4244325 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249780.1 CDS STMDT12_C40840 NC_016860.1 4244532 4245917 D COG1113 Gamma-aminobutyrate permease and related permeases; putative transport protein YifK 4244532..4245917 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249781.1 CDS STMDT12_C40850 NC_016860.1 4247034 4248233 R COG3071 Uncharacterized enzyme of heme biosynthesis; putative protoheme IX biogenesis protein complement(4247034..4248233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249782.1 CDS STMDT12_C40860 NC_016860.1 4248233 4249402 R COG2959 Uncharacterized enzyme of heme biosynthesis; putative uroporphyrinogen III C-methyltransferase complement(4248233..4249402) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249783.1 CDS hemD NC_016860.1 4249424 4250164 R COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(4249424..4250164) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249784.1 CDS hemC NC_016860.1 4250161 4251102 R COG0181 Porphobilinogen deaminase; porphobilinogen deaminase complement(4250161..4251102) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249785.1 CDS cyaA NC_016860.1 4251479 4254025 D COG3072 Adenylate cyclase; adenylate cyclase 4251479..4254025 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249786.1 CDS STMDT12_C40900 NC_016860.1 4254133 4254486 D hypothetical protein 4254133..4254486 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249787.1 CDS STMDT12_C40910 NC_016860.1 4254672 4255214 D putative inner membrane protein 4254672..4255214 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249788.1 CDS cyaY NC_016860.1 4255659 4255979 R COG1965 Protein implicated in iron transport, frataxin homolog; frataxin-like protein complement(4255659..4255979) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249789.1 CDS STMDT12_C40930 NC_016860.1 4256049 4256429 R putative inner membrane protein complement(4256049..4256429) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249790.1 CDS STMDT12_C40940 NC_016860.1 4256566 4256658 R hypothetical protein complement(4256566..4256658) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249791.1 CDS STMDT12_C40950 NC_016860.1 4257134 4257337 D COG5567 Predicted small periplasmic lipoprotein; putative lipoprotein 4257134..4257337 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249792.1 CDS dapF NC_016860.1 4257374 4258198 D COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 4257374..4258198 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249793.1 CDS STMDT12_C40970 NC_016860.1 4258195 4258902 D COG3159 Uncharacterized protein conserved in bacteria; hypothetical protein 4258195..4258902 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249794.1 CDS xerC NC_016860.1 4258899 4259801 D COG4973 Site-specific recombinase XerC; site-specific tyrosine recombinase XerC 4258899..4259801 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249795.1 CDS STMDT12_C40990 NC_016860.1 4259801 4260517 D COG1011 Predicted hydrolase (HAD superfamily); flavin mononucleotide phosphatase 4259801..4260517 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249796.1 CDS uvrD NC_016860.1 4260653 4262815 D COG0210 Superfamily I DNA and RNA helicases; DNA-dependent helicase II 4260653..4262815 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249797.1 CDS STMDT12_C41010 NC_016860.1 4263287 4264237 D COG0598 Mg2+ and Co2+ transporters; magnesium/nickel/cobalt transporter CorA 4263287..4264237 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249798.1 CDS STMDT12_C41020 NC_016860.1 4264286 4264666 R hypothetical protein complement(4264286..4264666) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249799.1 CDS STMDT12_C41030 NC_016860.1 4264682 4265140 R hypothetical protein complement(4264682..4265140) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249800.1 CDS STMDT12_C41040 NC_016860.1 4265175 4266059 R COG2962 Predicted permeases; chloramphenicol resistance protein complement(4265175..4266059) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249801.1 CDS STMDT12_C41050 NC_016860.1 4266103 4266570 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein complement(4266103..4266570) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249802.1 CDS STMDT12_C41060 NC_016860.1 4266735 4267604 D COG2829 Outer membrane phospholipase A; phospholipase A 4266735..4267604 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249803.1 CDS STMDT12_C41070 NC_016860.1 4267670 4269517 D COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ 4267670..4269517 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249804.1 CDS rhtC NC_016860.1 4269581 4270201 D COG1280 Putative threonine efflux protein; threonine efflux protein 4269581..4270201 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249805.1 CDS rhtB NC_016860.1 4270241 4270861 R COG1280 Putative threonine efflux protein; homoserine/homoserine lactone efflux protein complement(4270241..4270861) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249806.1 CDS STMDT12_C41100 NC_016860.1 4270972 4271988 D COG2267 Lysophospholipase; lysophospholipase L2 4270972..4271988 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249807.1 CDS STMDT12_C41110 NC_016860.1 4272004 4272804 D COG0561 Predicted hydrolases of the HAD superfamily; putative sugar phosphatase 4272004..4272804 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249808.1 CDS STMDT12_C41120 NC_016860.1 4272885 4273784 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 4272885..4273784 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249809.1 CDS STMDT12_C41130 NC_016860.1 4273672 4274625 R COG0583 Transcriptional regulator; transcriptional regulator MetR complement(4273672..4274625) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249810.1 CDS STMDT12_C41140 NC_016860.1 4274874 4277138 D COG0620 Methionine synthase II (cobalamin-independent); 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4274874..4277138 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249811.1 CDS STMDT12_C41150 NC_016860.1 4277291 4277425 R hypothetical protein complement(4277291..4277425) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249812.1 CDS STMDT12_C41160 NC_016860.1 4277530 4278825 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative arylsulfatase regulator 4277530..4278825 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249813.1 CDS STMDT12_C41170 NC_016860.1 4278905 4279717 R COG0412 Dienelactone hydrolase and related enzymes; dienelactone hydrolase complement(4278905..4279717) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249814.1 CDS STMDT12_C41180 NC_016860.1 4279976 4280737 D COG2820 Uridine phosphorylase; uridine phosphorylase 4279976..4280737 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249815.1 CDS STMDT12_C41190 NC_016860.1 4280877 4282307 D COG1322 Uncharacterized protein conserved in bacteria; DNA recombination protein RmuC 4280877..4282307 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249816.1 CDS ubiE NC_016860.1 4282403 4283158 D COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 4282403..4283158 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249817.1 CDS STMDT12_C41210 NC_016860.1 4283168 4283773 D COG3165 Uncharacterized protein conserved in bacteria; sterol-binding domain protein 4283168..4283773 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249818.1 CDS ubiB NC_016860.1 4283770 4285410 D COG0661 Predicted unusual protein kinase; putative ubiquinone biosynthesis protein UbiB 4283770..4285410 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249819.1 CDS tatA NC_016860.1 4285616 4285870 D COG1826 Sec-independent protein secretion pathway components; twin-arginine protein translocation system subunit TatA 4285616..4285870 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249820.1 CDS STMDT12_C41240 NC_016860.1 4285874 4286422 D COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 4285874..4286422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249821.1 CDS STMDT12_C41250 NC_016860.1 4286425 4287204 D COG0805 Sec-independent protein secretion pathway component TatC; twin-arginine protein translocation system subunit TatC 4286425..4287204 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249822.1 CDS STMDT12_C41260 NC_016860.1 4287246 4288028 D COG0084 Mg-dependent DNase; DNase TatD 4287246..4288028 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249823.1 CDS rfaH NC_016860.1 4288036 4288524 R COG0250 Transcription antiterminator; transcriptional activator RfaH complement(4288036..4288524) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249824.1 CDS STMDT12_C41280 NC_016860.1 4288710 4290188 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4288710..4290188 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249825.1 CDS fre NC_016860.1 4290274 4290975 D COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; FMN reductase 4290274..4290975 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249826.1 CDS STMDT12_C41300 NC_016860.1 4291229 4291942 D putative frameshift mutation; arylsulfotransferase 4291229..4291942 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249827.1 CDS STMDT12_C41310 NC_016860.1 4291994 4293052 D putative frameshift mutation; arylsulfotransferase 4291994..4293052 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249828.1 CDS fadA NC_016860.1 4293249 4294412 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(4293249..4294412) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249829.1 CDS fadB NC_016860.1 4294422 4296611 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(4294422..4296611) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249830.1 CDS STMDT12_C41340 NC_016860.1 4296801 4298132 D COG0006 Xaa-Pro aminopeptidase; proline dipeptidase 4296801..4298132 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249831.1 CDS STMDT12_C41350 NC_016860.1 4298132 4298746 D COG1739 Uncharacterized conserved protein; hypothetical protein 4298132..4298746 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249832.1 CDS STMDT12_C41360 NC_016860.1 4298785 4300236 D COG0168 Trk-type K+ transport systems, membrane components; potassium transporter 4298785..4300236 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249833.1 CDS hemG NC_016860.1 4300248 4300793 D COG4635 Flavodoxin; protoporphyrinogen oxidase 4300248..4300793 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249834.1 CDS STMDT12_C41380 NC_016860.1 4306794 4307324 R COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(4306794..4307324) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249835.1 CDS mobA NC_016860.1 4307306 4307890 R COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4307306..4307890) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249836.1 CDS STMDT12_C41400 NC_016860.1 4307960 4308229 D COG3084 Uncharacterized protein conserved in bacteria; hypothetical protein 4307960..4308229 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249837.1 CDS rdoA NC_016860.1 4308306 4309292 D COG2334 Putative homoserine kinase type II (protein kinase fold); serine/threonine protein kinase 4308306..4309292 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249838.1 CDS STMDT12_C41420 NC_016860.1 4309309 4309932 D COG0526 Thiol-disulfide isomerase and thioredoxins; protein disulfide isomerase I 4309309..4309932 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249839.1 CDS STMDT12_C41430 NC_016860.1 4309945 4310853 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; putative acyltransferase complement(4309945..4310853) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249840.1 CDS STMDT12_C41440 NC_016860.1 4311241 4314027 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 4311241..4314027 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249841.1 CDS engB NC_016860.1 4314362 4314994 R COG0218 Predicted GTPase; ribosome biogenesis GTP-binding protein YsxC complement(4314362..4314994) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249842.1 CDS STMDT12_C41460 NC_016860.1 4315234 4315458 D hypothetical protein 4315234..4315458 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249843.1 CDS STMDT12_C41470 NC_016860.1 4315577 4316092 D COG3078 Uncharacterized protein conserved in bacteria; hypothetical protein 4315577..4316092 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249844.1 CDS STMDT12_C41480 NC_016860.1 4316281 4317654 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 4316281..4317654 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249845.1 CDS glnG NC_016860.1 4317967 4319376 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen regulation protein NR(I) complement(4317967..4319376) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249846.1 CDS glnL NC_016860.1 4319385 4320434 R COG3852 Signal transduction histidine kinase, nitrogen specific; nitrogen regulation protein NR(II) complement(4319385..4320434) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249847.1 CDS glnA NC_016860.1 4320709 4322118 R COG0174 Glutamine synthetase; glutamine synthetase complement(4320709..4322118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249848.1 CDS STMDT12_C41520 NC_016860.1 4322494 4324317 D COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 4322494..4324317 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249849.1 CDS STMDT12_C41530 NC_016860.1 4324372 4325106 R COG0561 Predicted hydrolases of the HAD superfamily; putative hydrolase complement(4324372..4325106) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249850.1 CDS STMDT12_C41540 NC_016860.1 4325091 4325969 R COG0535 Predicted Fe-S oxidoreductases; putative inner membrane protein complement(4325091..4325969) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249851.1 CDS STMDT12_C41550 NC_016860.1 4325966 4327207 R COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase complement(4325966..4327207) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249852.1 CDS STMDT12_C41560 NC_016860.1 4327209 4328084 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative membrane-associated metal-dependent hydrolase complement(4327209..4328084) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249853.1 CDS STMDT12_C41570 NC_016860.1 4328077 4329063 R hypothetical protein complement(4328077..4329063) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249854.1 CDS STMDT12_C41580 NC_016860.1 4329115 4329963 R putative cytoplasmic protein complement(4329115..4329963) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249855.1 CDS ompL NC_016860.1 4330120 4330812 R outer membrane porin L complement(4330120..4330812) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249856.1 CDS STMDT12_C41600 NC_016860.1 4330880 4332301 R COG2211 Na+/melibiose symporter and related transporters; putative membrane permease complement(4330880..4332301) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249857.1 CDS STMDT12_C41610 NC_016860.1 4332347 4333708 R COG2211 Na+/melibiose symporter and related transporters; putative membrane permease complement(4332347..4333708) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249858.1 CDS STMDT12_C41620 NC_016860.1 4333754 4335790 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase complement(4333754..4335790) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249859.1 CDS STMDT12_C41630 NC_016860.1 4335834 4336676 R COG2017 Galactose mutarotase and related enzymes; putative aldose-1-epimerase complement(4335834..4336676) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249860.1 CDS STMDT12_C41640 NC_016860.1 4336695 4337936 R COG2942 N-acyl-D-glucosamine 2-epimerase; putative isomerase complement(4336695..4337936) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249861.1 CDS STMDT12_C41650 NC_016860.1 4337952 4338830 R COG3684 Tagatose-1,6-bisphosphate aldolase; putative aldolase complement(4337952..4338830) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249862.1 CDS STMDT12_C41660 NC_016860.1 4338853 4339749 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; putative oxidoreductase complement(4338853..4339749) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249863.1 CDS STMDT12_C41670 NC_016860.1 4339914 4340810 D COG0524 Sugar kinases, ribokinase family; putative sugar kinase 4339914..4340810 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249864.1 CDS STMDT12_C41680 NC_016860.1 4340844 4341647 D COG1349 Transcriptional regulators of sugar metabolism; glycerol-3-phosphate regulon repressor 4340844..4341647 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249865.1 CDS STMDT12_C41690 NC_016860.1 4341838 4342437 D COG1011 Predicted hydrolase (HAD superfamily); phosphatase 4341838..4342437 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249866.1 CDS rbn NC_016860.1 4342431 4343303 D COG1295 Predicted membrane protein; ribonuclease BN 4342431..4343303 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249867.1 CDS STMDT12_C41710 NC_016860.1 4343300 4343737 D COG1490 D-Tyr-tRNAtyr deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4343300..4343737 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249868.1 CDS STMDT12_C41720 NC_016860.1 4343782 4344723 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 4343782..4344723 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249869.1 CDS STMDT12_C41730 NC_016860.1 4344738 4345184 R COG5499 Predicted transcription regulator containing HTH domain; hypothetical protein complement(4344738..4345184) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249870.1 CDS STMDT12_C41740 NC_016860.1 4345181 4345492 R COG4680 Uncharacterized protein conserved in bacteria; Sea40 complement(4345181..4345492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249871.1 CDS STMDT12_C41750 NC_016860.1 4345578 4346507 R COG0657 Esterase/lipase; putative lipase complement(4345578..4346507) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249872.1 CDS STMDT12_C41760 NC_016860.1 4346701 4346820 R hypothetical protein complement(4346701..4346820) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249873.1 CDS STMDT12_C41770 NC_016860.1 4346725 4347036 D COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 4346725..4347036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249874.1 CDS STMDT12_C41780 NC_016860.1 4347037 4347327 D COG2944 Predicted transcriptional regulator; putative regulatory protein 4347037..4347327 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249875.1 CDS STMDT12_C41790 NC_016860.1 4347374 4348303 R COG3058 Uncharacterized protein involved in formate dehydrogenase formation; formate dehydrogenase accessory protein FdhE complement(4347374..4348303) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249876.1 CDS STMDT12_C41800 NC_016860.1 4348300 4348935 R COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-O gamma subunit complement(4348300..4348935) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249877.1 CDS STMDT12_C41810 NC_016860.1 4348932 4349834 R COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-O iron-sulfur subunit complement(4348932..4349834) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249878.1 CDS STMDT12_C41820 NC_016860.1 4349847 4352897 R formate dehydrogenase major subunit complement(4349847..4352897) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249879.1 CDS STMDT12_C41830 NC_016860.1 4353092 4353928 D COG1526 Uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase accessory protein 4353092..4353928 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249880.1 CDS STMDT12_C41840 NC_016860.1 4354196 4355227 R putative inner membrane lipoprotein complement(4354196..4355227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249881.1 CDS STMDT12_C41850 NC_016860.1 4355410 4356510 D hypothetical protein 4355410..4356510 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249882.1 CDS STMDT12_C41860 NC_016860.1 4356865 4357188 R branched-chain amino acid transporter complement(4356865..4357188) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249883.1 CDS STMDT12_C41870 NC_016860.1 4357188 4357847 R COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); azaleucine resistance protein AzlC complement(4357188..4357847) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249884.1 CDS STMDT12_C41880 NC_016860.1 4357948 4358496 D COG1396 Predicted transcriptional regulators; hypothetical protein 4357948..4358496 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249885.1 CDS STMDT12_C41890 NC_016860.1 4358585 4358899 R COG3254 Uncharacterized conserved protein; L-rhamnose mutarotase complement(4358585..4358899) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249886.1 CDS STMDT12_C41900 NC_016860.1 4358896 4360044 R COG1454 Alcohol dehydrogenase, class IV; alcohol dehydrogenase complement(4358896..4360044) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249887.1 CDS STMDT12_C41910 NC_016860.1 4360171 4360998 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase complement(4360171..4360998) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249888.1 CDS STMDT12_C41920 NC_016860.1 4361141 4362400 R COG4806 L-rhamnose isomerase; L-rhamnose isomerase complement(4361141..4362400) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249889.1 CDS rhaB NC_016860.1 4362397 4363866 R COG1070 Sugar (pentulose and hexulose) kinases; rhamnulokinase complement(4362397..4363866) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249890.1 CDS STMDT12_C41940 NC_016860.1 4364154 4364990 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaS 4364154..4364990 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249891.1 CDS STMDT12_C41950 NC_016860.1 4365143 4365991 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaR 4365143..4365991 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249892.1 CDS STMDT12_C41960 NC_016860.1 4365988 4367022 R rhamnose/proton symporter complement(4365988..4367022) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249893.1 CDS STMDT12_C41970 NC_016860.1 4367491 4367616 D hypothetical protein 4367491..4367616 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249894.1 CDS STMDT12_C41980 NC_016860.1 4367653 4368324 D hypothetical protein 4367653..4368324 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249895.1 CDS STMDT12_C41990 NC_016860.1 4368482 4369789 R COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; trap dicarboxylate transporter, DctM subunit complement(4368482..4369789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249896.1 CDS STMDT12_C42000 NC_016860.1 4369782 4370297 R COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; trap dicarboxylate transporter, DctQ subunit complement(4369782..4370297) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249897.1 CDS STMDT12_C42010 NC_016860.1 4370316 4371299 R COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; putative periplasmic dicarboxylate-binding protein complement(4370316..4371299) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249898.1 CDS STMDT12_C42020 NC_016860.1 4371628 4372248 D COG0605 Superoxide dismutase; superoxide dismutase 4371628..4372248 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249899.1 CDS STMDT12_C42030 NC_016860.1 4372318 4373007 D COG2258 Uncharacterized protein conserved in bacteria; hypothetical protein 4372318..4373007 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249900.1 CDS STMDT12_C42040 NC_016860.1 4373019 4373414 D putative inner membrane protein 4373019..4373414 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249901.1 CDS cpxA NC_016860.1 4373465 4374838 R COG0642 Signal transduction histidine kinase; two-component sensor kinase complement(4373465..4374838) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249902.1 CDS STMDT12_C42060 NC_016860.1 4374835 4375533 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator CpxR complement(4374835..4375533) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249903.1 CDS cpxP NC_016860.1 4375684 4376184 D COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; repressor CpxP 4375684..4376184 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249904.1 CDS fieF NC_016860.1 4376332 4377234 D COG0053 Predicted Co/Zn/Cd cation transporters; ferrous iron efflux protein F 4376332..4377234 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249905.1 CDS STMDT12_C42090 NC_016860.1 4377419 4378381 D COG0205 6-phosphofructokinase; 6-phosphofructokinase 4377419..4378381 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249906.1 CDS STMDT12_C42100 NC_016860.1 4378585 4379574 D COG1613 ABC-type sulfate transport system, periplasmic component; sulfate/thiosulfate ABC transporter substrate binding protein 4378585..4379574 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249907.1 CDS STMDT12_C42110 NC_016860.1 4379675 4380430 D COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 4379675..4380430 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249908.1 CDS STMDT12_C42120 NC_016860.1 4380693 4382027 D COG2211 Na+/melibiose symporter and related transporters; sugar (glycoside-pentoside-hexuronide) transporter 4380693..4382027 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249909.1 CDS STMDT12_C42130 NC_016860.1 4382038 4382997 D COG0524 Sugar kinases, ribokinase family; aminoimidazole riboside kinase 4382038..4382997 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249910.1 CDS STMDT12_C42140 NC_016860.1 4383007 4384047 D COG1397 ADP-ribosylglycohydrolase; putative ADP-ribosylglycohydrolase 4383007..4384047 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249911.1 CDS STMDT12_C42150 NC_016860.1 4384101 4384832 D COG2188 Transcriptional regulators; hypothetical protein 4384101..4384832 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249912.1 CDS STMDT12_C42160 NC_016860.1 4384930 4385094 D putative frameshift mutation; hypothetical protein 4384930..4385094 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249913.1 CDS STMDT12_C42170 NC_016860.1 4385110 4385241 D putative frameshift mutation; hypothetical protein 4385110..4385241 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249914.1 CDS STMDT12_C42180 NC_016860.1 4385331 4385681 R COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein complement(4385331..4385681) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249915.1 CDS lsrK NC_016860.1 4385695 4387245 R COG1070 Sugar (pentulose and hexulose) kinases; autoinducer 2 kinase LsrK complement(4385695..4387245) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249916.1 CDS STMDT12_C42200 NC_016860.1 4387375 4388334 R COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; putative sugar-binding domain protein complement(4387375..4388334) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249917.1 CDS STMDT12_C42210 NC_016860.1 4388590 4390125 D COG1129 ABC-type sugar transport system, ATPase component; putative ABC transporter ATP-binding protein ego 4388590..4390125 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249918.1 CDS STMDT12_C42220 NC_016860.1 4390119 4391162 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ABC transporter permease 4390119..4391162 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249919.1 CDS STMDT12_C42230 NC_016860.1 4391162 4392160 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; putative sugar transport protein 4391162..4392160 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249920.1 CDS STMDT12_C42240 NC_016860.1 4392189 4393211 D COG1879 ABC-type sugar transport system, periplasmic component; hypothetical protein 4392189..4393211 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249921.1 CDS STMDT12_C42250 NC_016860.1 4393240 4394115 D COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; aldolase 4393240..4394115 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249922.1 CDS lsrG NC_016860.1 4394198 4394488 D COG1359 Uncharacterized conserved protein; autoinducer 2-degrading protein LsrG 4394198..4394488 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249923.1 CDS STMDT12_C42270 NC_016860.1 4394498 4395262 D COG0036 Pentose-5-phosphate-3-epimerase; epimerase 4394498..4395262 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249924.1 CDS tpiA NC_016860.1 4395354 4396121 R COG0149 Triosephosphate isomerase; triosephosphate isomerase complement(4395354..4396121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249925.1 CDS STMDT12_C42290 NC_016860.1 4396234 4396830 R hypothetical protein complement(4396234..4396830) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249926.1 CDS STMDT12_C42300 NC_016860.1 4396931 4397359 D COG3152 Predicted membrane protein; hypothetical protein 4396931..4397359 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249927.1 CDS STMDT12_C42310 NC_016860.1 4397466 4398212 R COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; ferredoxin-NADP reductase complement(4397466..4398212) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249928.1 CDS glpX NC_016860.1 4398309 4399319 R COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose 1,6-bisphosphatase II complement(4398309..4399319) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249929.1 CDS glpK NC_016860.1 4399431 4400939 R COG0554 Glycerol kinase; glycerol kinase complement(4399431..4400939) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249930.1 CDS STMDT12_C42340 NC_016860.1 4400960 4401805 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein complement(4400960..4401805) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249931.1 CDS STMDT12_C42350 NC_016860.1 4402204 4402443 D COG3074 Uncharacterized protein conserved in bacteria; cell division protein zapB 4402204..4402443 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249932.1 CDS STMDT12_C42360 NC_016860.1 4402665 4403150 R COG0684 Demethylmenaquinone methyltransferase; ribonuclease activity regulator protein RraA complement(4402665..4403150) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249933.1 CDS STMDT12_C42370 NC_016860.1 4403243 4404172 R COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4403243..4404172) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249934.1 CDS hslU NC_016860.1 4404239 4405570 R COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU complement(4404239..4405570) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249935.1 CDS STMDT12_C42390 NC_016860.1 4405580 4406110 R COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease peptidase subunit complement(4405580..4406110) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249936.1 CDS STMDT12_C42400 NC_016860.1 4406202 4407083 R COG3087 Cell division protein; cell division protein FtsN complement(4406202..4407083) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249937.1 CDS STMDT12_C42410 NC_016860.1 4407270 4408295 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator CytR complement(4407270..4408295) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249938.1 CDS STMDT12_C42420 NC_016860.1 4408450 4410648 R COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA complement(4408450..4410648) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249939.1 CDS STMDT12_C42430 NC_016860.1 4410852 4411064 D COG0254 Ribosomal protein L31; hypothetical protein 4410852..4411064 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249940.1 CDS STMDT12_C42440 NC_016860.1 4411110 4411772 R hypothetical protein complement(4411110..4411772) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249941.1 CDS STMDT12_C42450 NC_016860.1 4411973 4413763 R putative arylsulfate sulfotransferase complement(4411973..4413763) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249942.1 CDS STMDT12_C42460 NC_016860.1 4413648 4413809 D hypothetical protein 4413648..4413809 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249943.1 CDS STMDT12_C42470 NC_016860.1 4414220 4414537 R COG3060 Transcriptional regulator of met regulon; transcriptional repressor MetJ complement(4414220..4414537) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249944.1 CDS STMDT12_C42480 NC_016860.1 4414802 4415962 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 4414802..4415962 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249945.1 CDS metL NC_016860.1 4415965 4418397 D COG0527 Aspartokinases; bifunctional aspartate kinase II/homoserine dehydrogenase II 4415965..4418397 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249946.1 CDS STMDT12_C42500 NC_016860.1 4418513 4419370 R COG0668 Small-conductance mechanosensitive channel; putative inner membrane protein complement(4418513..4419370) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249947.1 CDS STMDT12_C42510 NC_016860.1 4419373 4420371 R hypothetical protein complement(4419373..4420371) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249948.1 CDS STMDT12_C42520 NC_016860.1 4420606 4421730 R putative cytoplasmic protein complement(4420606..4421730) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249949.1 CDS STMDT12_C42530 NC_016860.1 4421866 4423422 D COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase 4421866..4423422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249950.1 CDS metF NC_016860.1 4423617 4424507 D COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4423617..4424507 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249951.1 CDS STMDT12_C42550 NC_016860.1 4424672 4426852 D COG0376 Catalase (peroxidase I); catalase/peroxidase HPI 4424672..4426852 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249952.1 CDS STMDT12_C42560 NC_016860.1 4426910 4427533 R COG3738 Uncharacterized protein conserved in bacteria; NADH:ubiquinone oxidoreductase, na complement(4426910..4427533) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249953.1 CDS gldA2 NC_016860.1 4427792 4428895 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(4427792..4428895) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249954.1 CDS STMDT12_C42580 NC_016860.1 4428907 4429569 R COG0176 Transaldolase; fructose-6-phosphate aldolase complement(4428907..4429569) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249955.1 CDS STMDT12_C42590 NC_016860.1 4429580 4432081 R COG1925 Phosphotransferase system, HPr-related proteins; PEP-protein phosphotransferase complement(4429580..4432081) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249956.1 CDS STMDT12_C42600 NC_016860.1 4432390 4433469 D COG1299 Phosphotransferase system, fructose-specific IIC component; putative fructose-like PTS system EIIC protein 2 4432390..4433469 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249957.1 CDS STMDT12_C42610 NC_016860.1 4433484 4433804 D COG1445 Phosphotransferase system fructose-specific component IIB; putative fructose-like PTS system EIIB protein 2 4433484..4433804 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249958.1 CDS pflD NC_016860.1 4433903 4436200 D COG1882 Pyruvate-formate lyase; putative formate acetyltransferase 2 4433903..4436200 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249959.1 CDS STMDT12_C42630 NC_016860.1 4436166 4437044 D COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase 2-activating enzyme 4436166..4437044 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249960.1 CDS STMDT12_C42640 NC_016860.1 4437046 4437399 D COG1445 Phosphotransferase system fructose-specific component IIB; putative fructose-like PTS system EIIB protein 3 4437046..4437399 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249961.1 CDS STMDT12_C42650 NC_016860.1 4437386 4438237 R COG2207 AraC-type DNA-binding domain-containing proteins; putative AraC family transcriptional regulator complement(4437386..4438237) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249962.1 CDS STMDT12_C42660 NC_016860.1 4438398 4440131 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein complement(4438398..4440131) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249963.1 CDS STMDT12_C42670 NC_016860.1 4440342 4442993 R COG2352 Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(4440342..4442993) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249964.1 CDS STMDT12_C42680 NC_016860.1 4443362 4444513 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; acetylornithine deacetylase complement(4443362..4444513) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249965.1 CDS argC NC_016860.1 4444602 4445606 D COG0002 Acetylglutamate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase 4444602..4445606 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249966.1 CDS STMDT12_C42700 NC_016860.1 4445617 4446390 D COG0548 Acetylglutamate kinase; acetylglutamate kinase 4445617..4446390 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249967.1 CDS STMDT12_C42710 NC_016860.1 4446508 4447884 D COG0165 Argininosuccinate lyase; argininosuccinate lyase 4446508..4447884 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249968.1 CDS STMDT12_C42720 NC_016860.1 4448169 4449086 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator OxyR 4448169..4449086 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249969.1 CDS STMDT12_C42730 NC_016860.1 4449069 4450469 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; soluble pyridine nucleotide transhydrogenase complement(4449069..4450469) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249970.1 CDS STMDT12_C42740 NC_016860.1 4450671 4451303 D COG1309 Transcriptional regulator; DNA-binding transcriptional repressor FabR 4450671..4451303 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249971.1 CDS STMDT12_C42750 NC_016860.1 4451319 4451678 D COG1882 Pyruvate-formate lyase; hypothetical protein 4451319..4451678 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249972.1 CDS STMDT12_C42760 NC_016860.1 4451725 4452825 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (uracil-5-)-methyltransferase complement(4451725..4452825) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249973.1 CDS btuB NC_016860.1 4453199 4455043 D COG4206 Outer membrane cobalamin receptor protein; vitamin B12/cobalamin outer membrane transporter 4453199..4455043 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249974.1 CDS STMDT12_C42780 NC_016860.1 4455057 4455839 D COG0796 Glutamate racemase; glutamate racemase 4455057..4455839 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249975.1 CDS murB NC_016860.1 4461759 4462787 D COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 4461759..4462787 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249976.1 CDS STMDT12_C42800 NC_016860.1 4462784 4463746 D COG1654 Biotin operon repressor; biotin--protein ligase 4462784..4463746 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249977.1 CDS STMDT12_C42810 NC_016860.1 4463781 4464707 R COG1072 Panthothenate kinase; pantothenate kinase complement(4463781..4464707) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249978.1 CDS STMDT12_C42820 NC_016860.1 4465690 4466874 D COG0050 GTPases - translation elongation factors; elongation factor Tu 4465690..4466874 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249979.1 CDS secE NC_016860.1 4467104 4467487 D COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 4467104..4467487 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249980.1 CDS nusG NC_016860.1 4467489 4468034 D COG0250 Transcription antiterminator; transcription antitermination protein NusG 4467489..4468034 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249981.1 CDS rplK NC_016860.1 4468192 4468620 D COG0080 Ribosomal protein L11; 50S ribosomal protein L11 4468192..4468620 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249982.1 CDS rplA NC_016860.1 4468624 4469328 D COG0081 Ribosomal protein L1; 50S ribosomal protein L1 4468624..4469328 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249983.1 CDS rplJ NC_016860.1 4469748 4470245 D COG0244 Ribosomal protein L10; 50S ribosomal protein L10 4469748..4470245 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249984.1 CDS rplL NC_016860.1 4470312 4470677 D COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 4470312..4470677 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249985.1 CDS rpoB NC_016860.1 4470995 4475023 D COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta 4470995..4475023 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249986.1 CDS STMDT12_C42900 NC_016860.1 4475100 4479323 D COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-directed RNA polymerase subunit beta' 4475100..4479323 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249987.1 CDS STMDT12_C42910 NC_016860.1 4479410 4479688 D putative inner membrane protein 4479410..4479688 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249988.1 CDS STMDT12_C42920 NC_016860.1 4479694 4480047 R hypothetical protein complement(4479694..4480047) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249989.1 CDS STMDT12_C42930 NC_016860.1 4479992 4480129 R hypothetical protein complement(4479992..4480129) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249990.1 CDS STMDT12_C42940 NC_016860.1 4480419 4481447 D NleB 4480419..4481447 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249991.1 CDS STMDT12_C42950 NC_016860.1 4481770 4481958 D hypothetical protein 4481770..4481958 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249992.1 CDS thiH NC_016860.1 4482109 4483242 R COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; thiamine biosynthesis protein ThiH complement(4482109..4483242) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249993.1 CDS thiG NC_016860.1 4483239 4484009 R COG2022 Uncharacterized enzyme of thiazole biosynthesis; thiazole synthase complement(4483239..4484009) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249994.1 CDS STMDT12_C42980 NC_016860.1 4484011 4484211 R COG2104 Sulfur transfer protein involved in thiamine biosynthesis; sulfur carrier protein ThiS complement(4484011..4484211) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249995.1 CDS STMDT12_C42990 NC_016860.1 4484192 4484950 R COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamine biosynthesis protein ThiF complement(4484192..4484950) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249996.1 CDS STMDT12_C43000 NC_016860.1 4484943 4485578 R COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(4484943..4485578) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249997.1 CDS STMDT12_C43010 NC_016860.1 4485578 4487473 R COG0422 Thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC complement(4485578..4487473) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249998.1 CDS STMDT12_C43020 NC_016860.1 4487837 4488325 R COG3160 Regulator of sigma D; anti-RNA polymerase sigma 70 factor complement(4487837..4488325) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005249999.1 CDS nudC NC_016860.1 4488418 4489191 D COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; NADH pyrophosphatase 4488418..4489191 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250000.1 CDS hemE NC_016860.1 4489232 4490296 D COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 4489232..4490296 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250001.1 CDS STMDT12_C43050 NC_016860.1 4490306 4490977 D COG1515 Deoxyinosine 3'endonuclease (endonuclease V); endonuclease V 4490306..4490977 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250002.1 CDS STMDT12_C43060 NC_016860.1 4491019 4491609 D COG3068 Uncharacterized protein conserved in bacteria; hypothetical protein 4491019..4491609 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250003.1 CDS STMDT12_C43070 NC_016860.1 4491796 4492068 D COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit alpha 4491796..4492068 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250004.1 CDS STMDT12_C43080 NC_016860.1 4492080 4492772 D putative inner membrane protein 4492080..4492772 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250005.1 CDS zraP NC_016860.1 4492814 4493269 R zinc resistance protein complement(4492814..4493269) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250006.1 CDS STMDT12_C43100 NC_016860.1 4493523 4494920 D COG0642 Signal transduction histidine kinase; sensor kinase ZraS 4493523..4494920 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250007.1 CDS STMDT12_C43110 NC_016860.1 4494926 4496251 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional regulator ZraR 4494926..4496251 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250008.1 CDS STMDT12_C43120 NC_016860.1 4496248 4497537 R COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase complement(4496248..4497537) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250009.1 CDS purH NC_016860.1 4497549 4499138 R COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4497549..4499138) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250010.1 CDS STMDT12_C43140 NC_016860.1 4505333 4505770 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein complement(4505333..4505770) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250011.1 CDS STMDT12_C43150 NC_016860.1 4505927 4506856 D COG1897 Homoserine trans-succinylase; homoserine O-succinyltransferase 4505927..4506856 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250012.1 CDS STMDT12_C43160 NC_016860.1 4507125 4508726 D COG2225 Malate synthase; malate synthase 4507125..4508726 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250013.1 CDS STMDT12_C43170 NC_016860.1 4508758 4510062 D COG2224 Isocitrate lyase; isocitrate lyase 4508758..4510062 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250014.1 CDS aceK NC_016860.1 4510164 4511915 D COG4579 Isocitrate dehydrogenase kinase/phosphatase; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4510164..4511915 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250015.1 CDS STMDT12_C43190 NC_016860.1 4511879 4512313 R COG4405 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(4511879..4512313) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250016.1 CDS STMDT12_C43200 NC_016860.1 4512297 4513121 R COG1414 Transcriptional regulator; IclR family transcriptional regulator complement(4512297..4513121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250017.1 CDS metH NC_016860.1 4513425 4517108 D COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain; B12-dependent methionine synthase 4513425..4517108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250018.1 CDS STMDT12_C43220 NC_016860.1 4517450 4519006 D COG1283 Na+/phosphate symporter; sodium-dependent inorganic phosphate transporter 4517450..4519006 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250019.1 CDS STMDT12_C43230 NC_016860.1 4519082 4519771 R COG3340 Peptidase E; peptidase E complement(4519082..4519771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250020.1 CDS STMDT12_C43240 NC_016860.1 4519979 4520518 D COG3122 Uncharacterized protein conserved in bacteria; nucleoprotein/polynucleotide-associated enzyme 4519979..4520518 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250021.1 CDS STMDT12_C43250 NC_016860.1 4520565 4521434 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase F 4520565..4521434 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250022.1 CDS STMDT12_C43260 NC_016860.1 4521431 4521703 R hypothetical protein complement(4521431..4521703) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250023.1 CDS STMDT12_C43270 NC_016860.1 4521801 4522742 R COG0385 Predicted Na+-dependent transporter; bile acid:sodium symporter complement(4521801..4522742) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250024.1 CDS STMDT12_C43280 NC_016860.1 4523004 4523732 R putative cytoplasmic protein complement(4523004..4523732) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250025.1 CDS STMDT12_C43290 NC_016860.1 4523929 4524195 R putative inner membrane protein complement(4523929..4524195) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250026.1 CDS STMDT12_C43300 NC_016860.1 4524468 4524923 R putative cytoplasmic protein complement(4524468..4524923) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250027.1 CDS STMDT12_C43310 NC_016860.1 4524920 4525525 R putative cytoplasmic protein complement(4524920..4525525) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250028.1 CDS STMDT12_C43320 NC_016860.1 4525530 4527275 R COG5301 Phage-related tail fibre protein; putative phage tail fiber protein H complement(4525530..4527275) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250029.1 CDS STMDT12_C43330 NC_016860.1 4527278 4527910 R COG4385 Bacteriophage P2-related tail formation protein; putative phage tail protein complement(4527278..4527910) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250030.1 CDS STMDT12_C43340 NC_016860.1 4527903 4529018 R COG3948 Phage-related baseplate assembly protein; putative phage baseplate protein complement(4527903..4529018) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250031.1 CDS STMDT12_C43350 NC_016860.1 4529009 4529368 R COG3628 Phage baseplate assembly protein W; phage baseplate protein complement(4529009..4529368) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250032.1 CDS STMDT12_C43360 NC_016860.1 4529429 4529551 D hypothetical protein 4529429..4529551 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250033.1 CDS STMDT12_C43370 NC_016860.1 4529532 4531079 R putative inner membrane protein complement(4529532..4531079) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250034.1 CDS STMDT12_C43380 NC_016860.1 4531079 4532008 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative phage glycosyltransferase complement(4531079..4532008) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250035.1 CDS STMDT12_C43390 NC_016860.1 4532005 4532367 R putative phage glucose translocase complement(4532005..4532367) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250036.1 CDS STMDT12_C43400 NC_016860.1 4532695 4533417 R COG4540 Phage P2 baseplate assembly protein gpV; tail spike protein complement(4532695..4533417) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250037.1 CDS STMDT12_C43410 NC_016860.1 4533427 4534470 R COG3500 Phage protein D; gp47 complement(4533427..4534470) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250038.1 CDS STMDT12_C43420 NC_016860.1 4534458 4534667 R phage tail protein X complement(4534458..4534667) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250039.1 CDS STMDT12_C43430 NC_016860.1 4534667 4535620 R putative methyl-accepting chemotaxis protein complement(4534667..4535620) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250040.1 CDS STMDT12_C43440 NC_016860.1 4535620 4537974 R COG5280 Phage-related minor tail protein; putative phage tail protein complement(4535620..4537974) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250041.1 CDS STMDT12_C43450 NC_016860.1 4538071 4538199 R hypothetical protein complement(4538071..4538199) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250042.1 CDS STMDT12_C43460 NC_016860.1 4538159 4538476 R hypothetical protein complement(4538159..4538476) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250043.1 CDS STMDT12_C43470 NC_016860.1 4538528 4539052 R COG3498 Phage tail tube protein FII; phage major tail tube protein complement(4538528..4539052) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250044.1 CDS STMDT12_C43480 NC_016860.1 4539052 4540479 R COG3497 Phage tail sheath protein FI; phage tail sheath protein complement(4539052..4540479) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250045.1 CDS STMDT12_C43490 NC_016860.1 4540469 4540666 R gp12 complement(4540469..4540666) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250046.1 CDS STMDT12_C43500 NC_016860.1 4540663 4541118 R putative cytoplasmic protein complement(4540663..4541118) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250047.1 CDS STMDT12_C43510 NC_016860.1 4541278 4541592 R gp54 complement(4541278..4541592) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250048.1 CDS STMDT12_C43520 NC_016860.1 4541605 4542210 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase complement(4541605..4542210) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250049.1 CDS STMDT12_C43530 NC_016860.1 4542213 4542500 R gp51 complement(4542213..4542500) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250050.1 CDS STMDT12_C43540 NC_016860.1 4543076 4543423 D COG5566 Uncharacterized conserved protein; DNA-binding protein RdgB 4543076..4543423 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250051.1 CDS STMDT12_C43550 NC_016860.1 4543556 4544905 R COG0527 Aspartokinases; aspartate kinase III complement(4543556..4544905) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250052.1 CDS pgi NC_016860.1 4545250 4546899 D COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 4545250..4546899 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250053.1 CDS STMDT12_C43570 NC_016860.1 4547343 4547585 D hypothetical protein 4547343..4547585 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250054.1 CDS STMDT12_C43580 NC_016860.1 4547649 4548287 D hypothetical protein 4547649..4548287 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250055.1 CDS STMDT12_C43590 NC_016860.1 4548284 4549021 D hypothetical protein 4548284..4549021 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250056.1 CDS STMDT12_C43600 NC_016860.1 4549021 4551117 D putative lipoprotein 4549021..4551117 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250057.1 CDS STMDT12_C43610 NC_016860.1 4551260 4551670 D COG3223 Predicted membrane protein; phosphate-starvation-inducible protein PsiE 4551260..4551670 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250058.1 CDS malG NC_016860.1 4551836 4552726 R COG3833 ABC-type maltose transport systems, permease component; maltose ABC transporter permease complement(4551836..4552726) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250059.1 CDS malF NC_016860.1 4552741 4554285 R COG1175 ABC-type sugar transport systems, permease components; maltose ABC transporter permease complement(4552741..4554285) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250060.1 CDS malE NC_016860.1 4554417 4555607 R COG2182 Maltose-binding periplasmic proteins/domains; maltose ABC transporter substrate binding protein complement(4554417..4555607) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250061.1 CDS STMDT12_C43650 NC_016860.1 4555969 4557078 D COG3839 ABC-type sugar transport systems, ATPase components; maltose ABC transporter ATP-binding protein 4555969..4557078 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250062.1 CDS lamB NC_016860.1 4557170 4558525 D COG4580 Maltoporin (phage lambda and maltose receptor); maltoporin 4557170..4558525 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250063.1 CDS STMDT12_C43670 NC_016860.1 4558689 4559606 D maltose ABC transporter substrate binding protein 4558689..4559606 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250064.1 CDS STMDT12_C43680 NC_016860.1 4559620 4559715 D hypothetical protein 4559620..4559715 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250065.1 CDS ubiC NC_016860.1 4559787 4560284 D COG3161 4-hydroxybenzoate synthetase (chorismate lyase); chorismate pyruvate lyase 4559787..4560284 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250066.1 CDS ubiA NC_016860.1 4560298 4561170 D COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; 4-hydroxybenzoate octaprenyltransferase 4560298..4561170 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250067.1 CDS STMDT12_C43710 NC_016860.1 4561269 4563689 R COG2937 Glycerol-3-phosphate O-acyltransferase; glycerol-3-phosphate acyltransferase complement(4561269..4563689) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250068.1 CDS STMDT12_C43720 NC_016860.1 4563860 4564228 D COG0818 Diacylglycerol kinase; diacylglycerol kinase 4563860..4564228 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250069.1 CDS STMDT12_C43730 NC_016860.1 4564337 4564945 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 4564337..4564945 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250070.1 CDS STMDT12_C43740 NC_016860.1 4565124 4566449 D COG0534 Na+-driven multidrug efflux pump; DNA-damage-inducible SOS response protein 4565124..4566449 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250071.1 CDS STMDT12_C43750 NC_016860.1 4566431 4566559 D putative cytoplasmic protein 4566431..4566559 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250072.1 CDS STMDT12_C43760 NC_016860.1 4566581 4566790 D COG3237 Uncharacterized protein conserved in bacteria; putative stress-response protein 4566581..4566790 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250073.1 CDS STMDT12_C43770 NC_016860.1 4566889 4567404 R COG0735 Fe2+/Zn2+ uptake regulation proteins; zinc uptake transcriptional repressor complement(4566889..4567404) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250074.1 CDS STMDT12_C43780 NC_016860.1 4567651 4568961 D conjugal transfer protein 4567651..4568961 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250075.1 CDS STMDT12_C43790 NC_016860.1 4569049 4570047 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A 4569049..4570047 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250076.1 CDS pspG NC_016860.1 4570215 4570457 D phage shock protein G 4570215..4570457 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250077.1 CDS STMDT12_C43810 NC_016860.1 4570632 4571615 R COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase complement(4570632..4571615) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250078.1 CDS STMDT12_C43820 NC_016860.1 4571680 4573095 D COG0305 Replicative DNA helicase; replicative DNA helicase 4571680..4573095 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250079.1 CDS alr NC_016860.1 4573127 4574206 D COG0787 Alanine racemase; alanine racemase 4573127..4574206 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250080.1 CDS STMDT12_C43840 NC_016860.1 4574392 4575585 D COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 4574392..4575585 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250081.1 CDS aphA NC_016860.1 4575772 4576485 D COG3700 Acid phosphatase (class B); acid phosphatase/phosphotransferase 4575772..4576485 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250082.1 CDS STMDT12_C43860 NC_016860.1 4576614 4577030 D COG0432 Uncharacterized conserved protein; hypothetical protein 4576614..4577030 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250083.1 CDS STMDT12_C43870 NC_016860.1 4577033 4577389 D COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 4577033..4577389 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250084.1 CDS STMDT12_C43880 NC_016860.1 4577390 4577728 R putative inner membrane protein complement(4577390..4577728) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250085.1 CDS STMDT12_C43890 NC_016860.1 4577715 4578158 R putative outer membrane lipoprotein complement(4577715..4578158) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250086.1 CDS uvrA NC_016860.1 4578302 4581127 R COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A complement(4578302..4581127) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250087.1 CDS STMDT12_C43910 NC_016860.1 4581375 4581905 D COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 4581375..4581905 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250088.1 CDS STMDT12_C43920 NC_016860.1 4582946 4583578 D hypothetical protein 4582946..4583578 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250089.1 CDS STMDT12_C43930 NC_016860.1 4583575 4584963 D COG0840 Methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis protein 4583575..4584963 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250090.1 CDS STMDT12_C43940 NC_016860.1 4585346 4586272 D COG1538 Outer membrane protein; ABC transporter permease 4585346..4586272 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250091.1 CDS STMDT12_C43950 NC_016860.1 4586296 4587546 D COG0845 Membrane-fusion protein; putative type I secretion protein 4586296..4587546 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250092.1 CDS STMDT12_C43960 NC_016860.1 4587563 4604242 D COG1404 Subtilisin-like serine proteases; putative inner membrane protein 4587563..4604242 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250093.1 CDS STMDT12_C43970 NC_016860.1 4604282 4606348 D COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; putative type I secretion protein 4604282..4606348 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250094.1 CDS STMDT12_C43980 NC_016860.1 4606626 4606907 R hypothetical protein complement(4606626..4606907) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250095.1 CDS STMDT12_C43990 NC_016860.1 4607470 4609071 D COG4943 Predicted signal transduction protein containing sensor and EAL domains; diguanylate cyclase 4607470..4609071 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250096.1 CDS STMDT12_C44000 NC_016860.1 4609059 4609382 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator SoxS complement(4609059..4609382) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250097.1 CDS STMDT12_C44010 NC_016860.1 4609469 4609927 D COG0789 Predicted transcriptional regulators; redox-sensitive transcriptional activator SoxR 4609469..4609927 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250098.1 CDS STMDT12_C44020 NC_016860.1 4610220 4610888 D COG0625 Glutathione S-transferase; putative glutathione S-transferase 4610220..4610888 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250099.1 CDS STMDT12_C44030 NC_016860.1 4611235 4612584 D COG2252 Permeases; putative xanthine/uracil permeases family protein 4611235..4612584 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250100.1 CDS STMDT12_C44040 NC_016860.1 4612577 4612735 R hypothetical protein complement(4612577..4612735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250101.1 CDS STMDT12_C44050 NC_016860.1 4612734 4614380 D COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; Na+/H+ antiporter 4612734..4614380 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250102.1 CDS STMDT12_C44060 NC_016860.1 4614475 4615362 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(4614475..4615362) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250103.1 CDS STMDT12_C44070 NC_016860.1 4615361 4615876 D COG1380 Putative effector of murein hydrolase LrgA; putative inner membrane protein 4615361..4615876 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250104.1 CDS STMDT12_C44080 NC_016860.1 4615869 4616558 D COG1346 Putative effector of murein hydrolase; lrgB-like family protein 4615869..4616558 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250105.1 CDS actP NC_016860.1 4616597 4618246 R COG4147 Predicted symporter; acetate permease complement(4616597..4618246) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250106.1 CDS STMDT12_C44100 NC_016860.1 4618243 4618557 R COG3162 Predicted membrane protein; putative inner membrane protein complement(4618243..4618557) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250107.1 CDS STMDT12_C44110 NC_016860.1 4618803 4620761 R COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase complement(4618803..4620761) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250108.1 CDS nrfA NC_016860.1 4621193 4622629 D COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; cytochrome c552 4621193..4622629 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250109.1 CDS STMDT12_C44130 NC_016860.1 4622741 4623307 D cytochrome c nitrite reductase pentaheme subunit 4622741..4623307 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250110.1 CDS STMDT12_C44140 NC_016860.1 4623304 4623975 D COG0437 Fe-S-cluster-containing hydrogenase components 1; putative formate-dependent nitrite reductase 4623304..4623975 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250111.1 CDS STMDT12_C44150 NC_016860.1 4623972 4624916 D COG3301 Formate-dependent nitrite reductase, membrane component; putative formate-dependent nitrate reductase 4623972..4624916 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250112.1 CDS STMDT12_C44160 NC_016860.1 4624909 4627131 D COG1138 Cytochrome c biogenesis factor; formate-dependent nitrite reductase 4624909..4627131 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250113.1 CDS STMDT12_C44170 NC_016860.1 4627128 4627748 D COG4235 Cytochrome c biogenesis factor; formate-dependent nitrite reductase complex subunit NrfG 4627128..4627748 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250114.1 CDS gltP NC_016860.1 4628093 4629403 D COG1301 Na+/H+-dicarboxylate symporters; glutamate/aspartate:proton symporter 4628093..4629403 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250115.1 CDS STMDT12_C44190 NC_016860.1 4629561 4630229 R COG0790 FOG: TPR repeat, SEL1 subfamily; tetratricopeptide repeat protein complement(4629561..4630229) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250116.1 CDS STMDT12_C44200 NC_016860.1 4630427 4632574 R formate dehydrogenase alpha subunit complement(4630427..4632574) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250117.1 CDS STMDT12_C44210 NC_016860.1 4632929 4633837 R COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases; putative dioxygenase complement(4632929..4633837) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250118.1 CDS STMDT12_C44220 NC_016860.1 4634095 4634529 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoalkylphosphonic acid N-acetyltransferase complement(4634095..4634529) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250119.1 CDS STMDT12_C44230 NC_016860.1 4634681 4635124 R COG2764 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4634681..4635124) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250120.1 CDS STMDT12_C44240 NC_016860.1 4635244 4635579 R COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; hypothetical protein complement(4635244..4635579) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250121.1 CDS STMDT12_C44250 NC_016860.1 4636047 4637549 D COG0477 Permeases of the major facilitator superfamily; proline/glycine betaine transporter 4636047..4637549 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250122.1 CDS STMDT12_C44260 NC_016860.1 4637619 4637708 D hypothetical protein 4637619..4637708 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250123.1 CDS STMDT12_C44270 NC_016860.1 4637716 4638795 R COG0642 Signal transduction histidine kinase; sensor kinase BasS/PmrB complement(4637716..4638795) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250124.1 CDS STMDT12_C44280 NC_016860.1 4638796 4639464 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BasR complement(4638796..4639464) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250125.1 CDS STMDT12_C44290 NC_016860.1 4639461 4641104 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative cell division protein complement(4639461..4641104) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250126.1 CDS STMDT12_C44300 NC_016860.1 4641238 4642575 R COG0531 Amino acid transporters; arginine:agmatin antiporter complement(4641238..4642575) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250127.1 CDS STMDT12_C44310 NC_016860.1 4642845 4643120 D COG3677 Transposase and inactivated derivatives; IS1 transposase 4642845..4643120 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250128.1 CDS STMDT12_C44320 NC_016860.1 4643039 4643542 D COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 4643039..4643542 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250129.1 CDS STMDT12_C44330 NC_016860.1 4643536 4644405 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarase B complement(4643536..4644405) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250130.1 CDS STMDT12_C44340 NC_016860.1 4644501 4645841 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(4644501..4645841) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250131.1 CDS STMDT12_C44350 NC_016860.1 4646571 4647290 R COG4565 Response regulator of citrate/malate metabolism; DNA-binding transcriptional activator DcuR complement(4646571..4647290) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250132.1 CDS STMDT12_C44360 NC_016860.1 4647287 4648918 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor kinase DcuS complement(4647287..4648918) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250133.1 CDS STMDT12_C44370 NC_016860.1 4649274 4651703 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase chain a 4649274..4651703 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250134.1 CDS STMDT12_C44380 NC_016860.1 4651717 4652343 D COG0437 Fe-S-cluster-containing hydrogenase components 1; dimethylsulfoxide reductase subunit B 4651717..4652343 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250135.1 CDS STMDT12_C44390 NC_016860.1 4652336 4653109 D COG3302 DMSO reductase anchor subunit; DMSO reductase anchor subunit 4652336..4653109 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250136.1 CDS STMDT12_C44400 NC_016860.1 4653185 4653778 D COG3381 Uncharacterized component of anaerobic dehydrogenases; putative anaerobic dehydrogenase component 4653185..4653778 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250137.1 CDS STMDT12_C44410 NC_016860.1 4653862 4655262 R COG5078 Ubiquitin-protein ligase; hypothetical protein complement(4653862..4655262) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250138.1 CDS STMDT12_C44420 NC_016860.1 4655611 4656471 D COG3204 Uncharacterized protein conserved in bacteria; hypothetical protein 4655611..4656471 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250139.1 CDS STMDT12_C44430 NC_016860.1 4656810 4657268 D COG1943 Transposase and inactivated derivatives; IS200 transposase 4656810..4657268 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250140.1 CDS STMDT12_C44440 NC_016860.1 4657477 4657665 R hypothetical protein complement(4657477..4657665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250141.1 CDS STMDT12_C44450 NC_016860.1 4657754 4657915 R putative cytoplasmic protein complement(4657754..4657915) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250142.1 CDS STMDT12_C44460 NC_016860.1 4657992 4658264 R COG2771 DNA-binding HTH domain-containing proteins; putative GerE-family regulatory protein complement(4657992..4658264) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250143.1 CDS STMDT12_C44470 NC_016860.1 4658276 4659151 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(4658276..4659151) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250144.1 CDS STMDT12_C44480 NC_016860.1 4659289 4659414 D hypothetical protein 4659289..4659414 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250145.1 CDS STMDT12_C44490 NC_016860.1 4659954 4660247 D COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein 4659954..4660247 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250146.1 CDS STMDT12_C44500 NC_016860.1 4660244 4660735 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase 4660244..4660735 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250147.1 CDS STMDT12_C44510 NC_016860.1 4660983 4661735 R COG0671 Membrane-associated phospholipid phosphatase; nonspecific acid phosphatase complement(4660983..4661735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250148.1 CDS STMDT12_C44520 NC_016860.1 4662944 4663321 R hypothetical protein complement(4662944..4663321) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250149.1 CDS STMDT12_C44530 NC_016860.1 4663393 4663725 D COG0789 Predicted transcriptional regulators; putative regulatory protein 4663393..4663725 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250150.1 CDS STMDT12_C44540 NC_016860.1 4664164 4664739 R COG1309 Transcriptional regulator; putative transcriptional regulator complement(4664164..4664739) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250151.1 CDS dipZ NC_016860.1 4664776 4666479 R COG4232 Thiol:disulfide interchange protein; thiol:disulfide interchange protein complement(4664776..4666479) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250152.1 CDS STMDT12_C44560 NC_016860.1 4666455 4666802 R COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent-cation tolerance protein CutA complement(4666455..4666802) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250153.1 CDS STMDT12_C44570 NC_016860.1 4666923 4668224 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(4666923..4668224) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250154.1 CDS aspA NC_016860.1 4668339 4669775 R COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase complement(4668339..4669775) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250155.1 CDS fxsA NC_016860.1 4670116 4670592 D COG3030 Protein affecting phage T7 exclusion by the F plasmid; FxsA protein 4670116..4670592 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250156.1 CDS STMDT12_C44600 NC_016860.1 4670651 4671913 R COG0531 Amino acid transporters; inner membrane protein YjeH complement(4670651..4671913) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250157.1 CDS STMDT12_C44610 NC_016860.1 4672168 4672461 D COG0234 Co-chaperonin GroES (HSP10); chaperonin GroES 4672168..4672461 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250158.1 CDS groEL NC_016860.1 4672505 4674151 D COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 4672505..4674151 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250159.1 CDS STMDT12_C44630 NC_016860.1 4674395 4674748 D putative lipoprotein 4674395..4674748 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250160.1 CDS STMDT12_C44640 NC_016860.1 4674796 4675653 R putative inner membrane protein complement(4674796..4675653) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250161.1 CDS STMDT12_C44650 NC_016860.1 4675935 4676963 R COG1509 Lysine 2,3-aminomutase; KamA family protein complement(4675935..4676963) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250162.1 CDS STMDT12_C44660 NC_016860.1 4677004 4677570 D elongation factor P 4677004..4677570 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250163.1 CDS STMDT12_C44670 NC_016860.1 4677589 4677765 D putative entericidin A 4677589..4677765 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250164.1 CDS STMDT12_C44680 NC_016860.1 4677873 4678019 D COG5510 Predicted small secreted protein; entericidin B membrane lipoprotein 4677873..4678019 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250165.1 CDS STMDT12_C44690 NC_016860.1 4678050 4678637 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator complement(4678050..4678637) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250166.1 CDS STMDT12_C44700 NC_016860.1 4678894 4679211 D COG2076 Membrane transporters of cations and cationic drugs; quaternary ammonium compound-resistance protein SugE 4678894..4679211 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250167.1 CDS STMDT12_C44710 NC_016860.1 4679228 4679761 R COG3040 Bacterial lipocalin; outer membrane lipoprotein Blc complement(4679228..4679761) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250168.1 CDS STMDT12_C44720 NC_016860.1 4679873 4680232 R COG3080 Fumarate reductase subunit D; fumarate reductase subunit D complement(4679873..4680232) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250169.1 CDS STMDT12_C44730 NC_016860.1 4680243 4680638 R COG3029 Fumarate reductase subunit C; fumarate reductase subunit C complement(4680243..4680638) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250170.1 CDS STMDT12_C44740 NC_016860.1 4680649 4681383 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit complement(4680649..4681383) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250171.1 CDS STMDT12_C44750 NC_016860.1 4681376 4683166 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(4681376..4683166) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250172.1 CDS STMDT12_C44760 NC_016860.1 4683489 4684466 D COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 4683489..4684466 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250173.1 CDS STMDT12_C44770 NC_016860.1 4684692 4686194 D COG0531 Amino acid transporters; putative amino acid permease 4684692..4686194 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250174.1 CDS STMDT12_C44780 NC_016860.1 4686246 4686560 D putative inner membrane protein 4686246..4686560 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250175.1 CDS STMDT12_C44790 NC_016860.1 4686627 4689953 R COG3264 Small-conductance mechanosensitive channel; hypothetical protein complement(4686627..4689953) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250176.1 CDS psd NC_016860.1 4689972 4690940 R COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase complement(4689972..4690940) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250177.1 CDS STMDT12_C44810 NC_016860.1 4691032 4692084 R COG1162 Predicted GTPases; ribosome-associated GTPase complement(4691032..4692084) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250178.1 CDS STMDT12_C44820 NC_016860.1 4692191 4692736 D COG1949 Oligoribonuclease (3'->5' exoribonuclease); oligoribonuclease 4692191..4692736 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250179.1 CDS STMDT12_C44830 NC_016860.1 4692798 4693538 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter substrate binding protein complement(4692798..4693538) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250180.1 CDS STMDT12_C44840 NC_016860.1 4694623 4695777 R COG1600 Uncharacterized Fe-S protein; putative Fe-S protein complement(4694623..4695777) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250181.1 CDS STMDT12_C44850 NC_016860.1 4695776 4697308 D COG0062 Uncharacterized conserved protein; hypothetical protein 4695776..4697308 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250182.1 CDS STMDT12_C44860 NC_016860.1 4697283 4697741 D COG0802 Predicted ATPase or kinase; putative ATPase 4697283..4697741 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250183.1 CDS STMDT12_C44870 NC_016860.1 4697758 4699077 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase II 4697758..4699077 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250184.1 CDS mutL NC_016860.1 4699087 4700943 D COG0323 DNA mismatch repair enzyme (predicted ATPase); DNA mismatch repair protein MutL 4699087..4700943 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250185.1 CDS miaA NC_016860.1 4700936 4701886 D COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4700936..4701886 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250186.1 CDS hfq NC_016860.1 4701969 4702277 D COG1923 Uncharacterized host factor I protein; RNA-binding protein Hfq 4701969..4702277 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250187.1 CDS STMDT12_C44910 NC_016860.1 4702349 4703629 D COG2262 GTPases; putative GTPase HflX 4702349..4703629 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250188.1 CDS STMDT12_C44920 NC_016860.1 4703844 4705103 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflK 4703844..4705103 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250189.1 CDS STMDT12_C44930 NC_016860.1 4705106 4706110 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflC 4705106..4706110 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250190.1 CDS STMDT12_C44940 NC_016860.1 4706189 4706386 D COG3242 Uncharacterized protein conserved in bacteria; hypothetical protein 4706189..4706386 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250191.1 CDS STMDT12_C44950 NC_016860.1 4706489 4707787 D COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 4706489..4707787 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250192.1 CDS STMDT12_C44960 NC_016860.1 4707931 4708419 D COG1959 Predicted transcriptional regulator; transcriptional repressor NsrR 4707931..4708419 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250193.1 CDS STMDT12_C44970 NC_016860.1 4708457 4710895 D COG0557 Exoribonuclease R; ribonuclease R 4708457..4710895 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250194.1 CDS STMDT12_C44980 NC_016860.1 4710986 4711717 D COG0566 rRNA methylases; 23S rRNA (guanosine-2'-O-)-methyltransferase 4710986..4711717 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250195.1 CDS STMDT12_C44990 NC_016860.1 4711849 4712253 D COG3789 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 4711849..4712253 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250196.1 CDS STMDT12_C45000 NC_016860.1 4712268 4712966 D COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; putative phage shock protein A 4712268..4712966 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250197.1 CDS STMDT12_C45010 NC_016860.1 4712966 4714036 D COG1226 Kef-type K+ transport systems, predicted NAD-binding component; putative inner membrane protein 4712966..4714036 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250198.1 CDS STMDT12_C45020 NC_016860.1 4714033 4714692 D hypothetical protein 4714033..4714692 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250199.1 CDS STMDT12_C45030 NC_016860.1 4714710 4715108 D COG3766 Predicted membrane protein; putative inner membrane protein 4714710..4715108 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250200.1 CDS STMDT12_C45040 NC_016860.1 4715118 4715756 D putative inner membrane protein 4715118..4715756 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250201.1 CDS STMDT12_C45050 NC_016860.1 4715759 4716922 D COG0754 Glutathionylspermidine synthase; putative glutathionylspermidine synthase 4715759..4716922 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250202.1 CDS STMDT12_C45060 NC_016860.1 4717007 4718629 D COG1960 Acyl-CoA dehydrogenases; isovaleryl CoA dehydrogenase 4717007..4718629 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250203.1 CDS STMDT12_C45070 NC_016860.1 4718674 4718949 R hypothetical protein complement(4718674..4718949) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250204.1 CDS STMDT12_C45080 NC_016860.1 4719080 4719382 R hypothetical protein complement(4719080..4719382) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250205.1 CDS STMDT12_C45090 NC_016860.1 4719593 4720342 D COG1073 Hydrolases of the alpha/beta superfamily; esterase 4719593..4720342 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250206.1 CDS STMDT12_C45100 NC_016860.1 4720339 4721094 R COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor UlaR complement(4720339..4721094) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250207.1 CDS STMDT12_C45110 NC_016860.1 4721199 4722263 R COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; putative L-ascorbate 6-phosphate lactonase complement(4721199..4722263) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250208.1 CDS ulaA2 NC_016860.1 4722626 4724023 D COG3037 Uncharacterized protein conserved in bacteria; ascorbate-specific PTS system IIC protein 4722626..4724023 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250209.1 CDS STMDT12_C45130 NC_016860.1 4724039 4724344 D COG3414 Phosphotransferase system, galactitol-specific IIB component; L-ascorbate-specific PTS system IIB protein 4724039..4724344 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250210.1 CDS STMDT12_C45140 NC_016860.1 4724354 4724818 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); L-ascorbate-specific PTS system IIA protein 4724354..4724818 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250211.1 CDS ulaD NC_016860.1 4724832 4725482 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 4724832..4725482 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250212.1 CDS STMDT12_C45160 NC_016860.1 4725492 4726346 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 4725492..4726346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250213.1 CDS sgaE NC_016860.1 4726346 4727032 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 4726346..4727032 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250214.1 CDS STMDT12_C45180 NC_016860.1 4727161 4727436 R putative outer membrane protein complement(4727161..4727436) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250215.1 CDS rpsF NC_016860.1 4727907 4728302 D COG0360 Ribosomal protein S6; 30S ribosomal protein S6 4727907..4728302 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250216.1 CDS STMDT12_C45200 NC_016860.1 4728309 4728623 D COG2965 Primosomal replication protein N; primosomal replication protein N 4728309..4728623 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250217.1 CDS rpsR NC_016860.1 4728628 4728855 D COG0238 Ribosomal protein S18; 30S ribosomal protein S18 4728628..4728855 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250218.1 CDS rplI NC_016860.1 4728897 4729346 D COG0359 Ribosomal protein L9; 50S ribosomal protein L9 4728897..4729346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250219.1 CDS STMDT12_C45230 NC_016860.1 4729494 4730420 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; exported membrane protein 4729494..4730420 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250220.1 CDS STMDT12_C45240 NC_016860.1 4730470 4731105 R COG3061 Cell envelope opacity-associated protein A; putative cell envelope opacity-associated protein complement(4730470..4731105) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250221.1 CDS STMDT12_C45250 NC_016860.1 4731325 4731945 D COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase 4731325..4731945 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250222.1 CDS STMDT12_C45260 NC_016860.1 4732241 4733650 D COG1113 Gamma-aminobutyrate permease and related permeases; D-alanine/D-serine/glycine permease 4732241..4733650 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250223.1 CDS STMDT12_C45270 NC_016860.1 4733762 4734424 R COG2846 Regulator of cell morphogenesis and NO signaling; iron-sulfur cluster repair di-iron protein complement(4733762..4734424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250224.1 CDS STMDT12_C45280 NC_016860.1 4734527 4735492 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; inner membrane protein YtfF complement(4734527..4735492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250225.1 CDS STMDT12_C45290 NC_016860.1 4735573 4736421 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(4735573..4736421) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250226.1 CDS STMDT12_C45300 NC_016860.1 4736509 4736895 D COG1733 Predicted transcriptional regulators; hypothetical protein 4736509..4736895 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250227.1 CDS cpdB NC_016860.1 4736953 4738896 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(4736953..4738896) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250228.1 CDS STMDT12_C45320 NC_016860.1 4739164 4739904 D COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; adenosine-3'(2'),5'-bisphosphate nucleotidase 4739164..4739904 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250229.1 CDS STMDT12_C45330 NC_016860.1 4739894 4740451 R COG3054 Predicted transcriptional regulator; hypothetical protein complement(4739894..4740451) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250230.1 CDS STMDT12_C45340 NC_016860.1 4740778 4740984 D hypothetical protein 4740778..4740984 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250231.1 CDS STMDT12_C45350 NC_016860.1 4741069 4742412 R COG1253 Hemolysins and related proteins containing CBS domains; putative transport protein complement(4741069..4742412) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250232.1 CDS STMDT12_C45360 NC_016860.1 4742677 4743219 R COG0225 Peptide methionine sulfoxide reductase; methionine sulfoxide reductase A complement(4742677..4743219) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250233.1 CDS STMDT12_C45370 NC_016860.1 4743432 4745165 D COG0729 Outer membrane protein; outer menbrane protein 4743432..4745165 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250234.1 CDS STMDT12_C45380 NC_016860.1 4745162 4748941 D COG2911 Uncharacterized protein conserved in bacteria; hypothetical protein 4745162..4748941 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250235.1 CDS STMDT12_C45390 NC_016860.1 4748944 4749288 D COG2105 Uncharacterized conserved protein; hypothetical protein 4748944..4749288 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250236.1 CDS STMDT12_C45400 NC_016860.1 4749342 4750550 R COG0477 Permeases of the major facilitator superfamily; putative sugar transport protein complement(4749342..4750550) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250237.1 CDS STMDT12_C45410 NC_016860.1 4750547 4751710 R COG3964 Predicted amidohydrolase; putative metallo-dependent hydrolase complement(4750547..4751710) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250238.1 CDS STMDT12_C45420 NC_016860.1 4752120 4752650 R COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase complement(4752120..4752650) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250239.1 CDS STMDT12_C45430 NC_016860.1 4752877 4753875 R COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase complement(4752877..4753875) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250240.1 CDS STMDT12_C45440 NC_016860.1 4754050 4755429 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4754050..4755429 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250241.1 CDS STMDT12_C45450 NC_016860.1 4755426 4755740 R hypothetical protein complement(4755426..4755740) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250242.1 CDS STMDT12_C45460 NC_016860.1 4755920 4756753 D COG1737 Transcriptional regulators; RpiR-family transcriptional regulator 4755920..4756753 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250243.1 CDS STMDT12_C45470 NC_016860.1 4756804 4758237 R COG0477 Permeases of the major facilitator superfamily; sugar transporter complement(4756804..4758237) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250244.1 CDS STMDT12_C45480 NC_016860.1 4758480 4758659 R hypothetical protein complement(4758480..4758659) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250245.1 CDS STMDT12_C45490 NC_016860.1 4758696 4760132 D COG0477 Permeases of the major facilitator superfamily; sugar transporter 4758696..4760132 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250246.1 CDS STMDT12_C45500 NC_016860.1 4760485 4761294 R COG3718 Uncharacterized enzyme involved in inositol metabolism; protein IolB complement(4760485..4761294) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250247.1 CDS STMDT12_C45510 NC_016860.1 4761319 4762824 R COG1012 NAD-dependent aldehyde dehydrogenases; methylmalonate-semialdehyde dehydrogenase complement(4761319..4762824) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250248.1 CDS STMDT12_C45520 NC_016860.1 4763322 4764089 D COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding protein 4763322..4764089 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250249.1 CDS STMDT12_C45530 NC_016860.1 4764364 4765269 D COG1082 Sugar phosphate isomerases/epimerases; 2-keto-myo-inositol dehydratase 4764364..4765269 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250250.1 CDS STMDT12_C45540 NC_016860.1 4765288 4766298 D COG0673 Predicted dehydrogenases and related proteins; inositol 2-dehydrogenase 4765288..4766298 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250251.1 CDS STMDT12_C45550 NC_016860.1 4766395 4767738 D COG5520 O-Glycosyl hydrolase; lysosomal glucosyl ceramidase-like protein 4766395..4767738 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250252.1 CDS STMDT12_C45560 NC_016860.1 4767739 4768572 D COG1082 Sugar phosphate isomerases/epimerases; putative endonuclease 4767739..4768572 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250253.1 CDS STMDT12_C45570 NC_016860.1 4768569 4769735 R COG0477 Permeases of the major facilitator superfamily; major facilitator family transporter complement(4768569..4769735) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250254.1 CDS STMDT12_C45580 NC_016860.1 4769796 4771727 R COG0524 Sugar kinases, ribokinase family; PfkB family protein complement(4769796..4771727) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250255.1 CDS STMDT12_C45590 NC_016860.1 4772150 4774090 D COG3962 Acetolactate synthase; malonic semialdehyde oxidative decarboxylase 4772150..4774090 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250256.1 CDS STMDT12_C45600 NC_016860.1 4774319 4775293 D COG0673 Predicted dehydrogenases and related proteins; dehydrogenase 4774319..4775293 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250257.1 CDS STMDT12_C45610 NC_016860.1 4775366 4776592 D COG0477 Permeases of the major facilitator superfamily; putative permease 4775366..4776592 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250258.1 CDS STMDT12_C45620 NC_016860.1 4776753 4777568 D COG4130 Predicted sugar epimerase; xylose isomerase domain-containing protein 4776753..4777568 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250259.1 CDS STMDT12_C45630 NC_016860.1 4777621 4778505 D COG1082 Sugar phosphate isomerases/epimerases; hypothetical protein 4777621..4778505 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250260.1 CDS STMDT12_C45640 NC_016860.1 4778561 4779112 R COG3028 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4778561..4779112) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250261.1 CDS STMDT12_C45650 NC_016860.1 4779220 4780560 D COG0312 Predicted Zn-dependent proteases and their inactivated homologs; peptidase PmbA 4779220..4780560 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250262.1 CDS STMDT12_C45660 NC_016860.1 4780659 4781045 D COG3783 Soluble cytochrome b562; soluble cytochrome b562 4780659..4781045 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250263.1 CDS STMDT12_C45670 NC_016860.1 4781332 4781661 D hypothetical protein 4781332..4781661 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250264.1 CDS STMDT12_C45680 NC_016860.1 4781672 4782034 D hypothetical protein 4781672..4782034 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250265.1 CDS STMDT12_C45690 NC_016860.1 4782034 4782336 D hypothetical protein 4782034..4782336 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250266.1 CDS STMDT12_C45700 NC_016860.1 4782359 4783135 D hypothetical protein 4782359..4783135 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250267.1 CDS STMDT12_C45710 NC_016860.1 4783147 4783791 D hypothetical protein 4783147..4783791 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250268.1 CDS STMDT12_C45720 NC_016860.1 4783850 4784983 D COG3964 Predicted amidohydrolase; dihydroorotase 4783850..4784983 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250269.1 CDS STMDT12_C45730 NC_016860.1 4784967 4786085 D COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; hypothetical protein 4784967..4786085 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250270.1 CDS STMDT12_C45740 NC_016860.1 4786082 4786822 D COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; hypothetical protein 4786082..4786822 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250271.1 CDS STMDT12_C45750 NC_016860.1 4786839 4788752 D COG3711 Transcriptional antiterminator; mannitol/fructose-specific PTS system IIA protein 4786839..4788752 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250272.1 CDS STMDT12_C45760 NC_016860.1 4788830 4789072 D COG3077 DNA-damage-inducible protein J; bifunctional antitoxin/transcriptional repressor RelB 4788830..4789072 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250273.1 CDS STMDT12_C45770 NC_016860.1 4789062 4789346 D COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 4789062..4789346 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250274.1 CDS nrdG NC_016860.1 4789350 4789814 R COG0602 Organic radical activating enzymes; anaerobic ribonucleotide reductase-activating protein complement(4789350..4789814) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250275.1 CDS STMDT12_C45790 NC_016860.1 4789935 4792073 R COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; anaerobic ribonucleoside triphosphate reductase complement(4789935..4792073) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250276.1 CDS STMDT12_C45800 NC_016860.1 4792482 4794134 R COG0366 Glycosidases; trehalose-6-phosphate hydrolase complement(4792482..4794134) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250277.1 CDS STMDT12_C45810 NC_016860.1 4794184 4795059 R putative frameshift mutation; trehalose-specific PTS system IIBC protein complement(4794184..4795059) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250278.1 CDS STMDT12_C45820 NC_016860.1 4795020 4795601 R putative frameshift mutation; trehalose-specific PTS system IIBC protein complement(4795020..4795601) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250279.1 CDS treR NC_016860.1 4795739 4796686 R COG1609 Transcriptional regulators; trehalose repressor complement(4795739..4796686) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250280.1 CDS STMDT12_C45840 NC_016860.1 4797070 4799778 D COG0474 Cation transport ATPase; magnesium-transporting ATPase MgtA 4797070..4799778 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250281.1 CDS STMDT12_C45850 NC_016860.1 4799894 4800340 R COG2801 Transposase and inactivated derivatives; putative transposase complement(4799894..4800340) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250282.1 CDS STMDT12_C45860 NC_016860.1 4800415 4800801 R COG0251 Putative translation initiation inhibitor, yjgF family; putative endoribonuclease L-PSP complement(4800415..4800801) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250283.1 CDS STMDT12_C45870 NC_016860.1 4800878 4801339 R COG1781 Aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit complement(4800878..4801339) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250284.1 CDS pyrB NC_016860.1 4801352 4802287 R COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit complement(4801352..4802287) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250285.1 CDS STMDT12_C45890 NC_016860.1 4802323 4802424 R pyrBI operon leader peptide complement(4802323..4802424) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250286.1 CDS argR NC_016860.1 4802514 4803002 R COG1438 Arginine repressor; arginine repressor complement(4802514..4803002) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250287.1 CDS STMDT12_C45910 NC_016860.1 4803005 4803103 D hypothetical protein 4803005..4803103 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250288.1 CDS STMDT12_C45920 NC_016860.1 4803189 4804592 R COG1288 Predicted membrane protein; putative arginine repressor complement(4803189..4804592) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250289.1 CDS STMDT12_C45930 NC_016860.1 4804648 4805652 R COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase complement(4804648..4805652) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250290.1 CDS STMDT12_C45940 NC_016860.1 4805764 4806696 R COG0549 Carbamate kinase; carbamate kinase complement(4805764..4806696) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250291.1 CDS STMDT12_C45950 NC_016860.1 4806707 4807927 R COG2235 Arginine deiminase; arginine deiminase complement(4806707..4807927) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250292.1 CDS STMDT12_C45960 NC_016860.1 4808603 4809055 D COG2731 Beta-galactosidase, beta subunit; putative cytoplasmic protein 4808603..4809055 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250293.1 CDS STMDT12_C45970 NC_016860.1 4809129 4810133 R COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase subunit I complement(4809129..4810133) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250294.1 CDS STMDT12_C45980 NC_016860.1 4810299 4810715 D COG3076 Uncharacterized protein conserved in bacteria; hypothetical protein 4810299..4810715 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250295.1 CDS STMDT12_C45990 NC_016860.1 4810727 4811539 D COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; tRNA hydroxylase 4810727..4811539 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250296.1 CDS STMDT12_C46000 NC_016860.1 4811773 4812261 R hypothetical protein complement(4811773..4812261) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250297.1 CDS STMDT12_C46010 NC_016860.1 4812368 4812871 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative acetyltransferase complement(4812368..4812871) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250298.1 CDS STMDT12_C46020 NC_016860.1 4813066 4814253 D COG4269 Predicted membrane protein; putative inner membrane protein 4813066..4814253 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250299.1 CDS valS NC_016860.1 4814395 4817250 R COG0525 Valyl-tRNA synthetase; valyl-tRNA synthetase complement(4814395..4817250) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250300.1 CDS STMDT12_C46040 NC_016860.1 4817250 4817693 R COG2927 DNA polymerase III, chi subunit; DNA polymerase III subunit chi complement(4817250..4817693) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250301.1 CDS STMDT12_C46050 NC_016860.1 4817830 4819341 R COG0260 Leucyl aminopeptidase; leucyl aminopeptidase complement(4817830..4819341) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250302.1 CDS STMDT12_C46060 NC_016860.1 4819736 4820836 D COG0795 Predicted permeases; putative permease 4819736..4820836 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250303.1 CDS STMDT12_C46070 NC_016860.1 4820836 4821918 D COG0795 Predicted permeases; inner membrane protein YjgQ 4820836..4821918 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250304.1 CDS STMDT12_C46080 NC_016860.1 4822036 4822131 D hypothetical protein 4822036..4822131 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250305.1 CDS STMDT12_C46090 NC_016860.1 4822113 4823111 R COG1609 Transcriptional regulators; regulatory protein complement(4822113..4823111) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250306.1 CDS STMDT12_C46100 NC_016860.1 4823175 4824494 R COG2610 H+/gluconate symporter and related permeases; Gnt-II system L-idonate transporter complement(4823175..4824494) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250307.1 CDS STMDT12_C46110 NC_016860.1 4824556 4825320 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); gluconate 5-dehydrogenase complement(4824556..4825320) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250308.1 CDS STMDT12_C46120 NC_016860.1 4825345 4826376 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-idonate 5-dehydrogenase complement(4825345..4826376) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250309.1 CDS idnK NC_016860.1 4826593 4827123 D COG3265 Gluconate kinase; D-gluconate kinase 4826593..4827123 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250310.1 CDS STMDT12_C46140 NC_016860.1 4827151 4828170 R COG1064 Zn-dependent alcohol dehydrogenases; hypothetical protein complement(4827151..4828170) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250311.1 CDS STMDT12_C46150 NC_016860.1 4828696 4828983 D COG0582 Integrase; putative integrase 4828696..4828983 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250312.1 CDS STMDT12_C46160 NC_016860.1 4829345 4832860 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; putative DNA helicase 4829345..4832860 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250313.1 CDS STMDT12_C46170 NC_016860.1 4832951 4833946 D COG4127 Uncharacterized conserved protein; restriction endonuclease 4832951..4833946 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250314.1 CDS STMDT12_C46180 NC_016860.1 4834059 4836143 R COG4930 Predicted ATP-dependent Lon-type protease; putative ATP-dependent Lon protease complement(4834059..4836143) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250315.1 CDS STMDT12_C46190 NC_016860.1 4836154 4838751 R putative cytoplasmic protein complement(4836154..4838751) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250316.1 CDS STMDT12_C46200 NC_016860.1 4838754 4839566 R putative cytoplasmic protein complement(4838754..4839566) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250317.1 CDS STMDT12_C46210 NC_016860.1 4839553 4840644 R COG3839 ABC-type sugar transport systems, ATPase components; putative ABC transporter ATP-binding protein complement(4839553..4840644) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250318.1 CDS STMDT12_C46220 NC_016860.1 4840644 4844321 R COG1002 Type II restriction enzyme, methylase subunits; putative type II restriction enzyme methylase subunit complement(4840644..4844321) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250319.1 CDS STMDT12_C46230 NC_016860.1 4844367 4848008 R putative DNA repair ATPase complement(4844367..4848008) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250320.1 CDS STMDT12_C46240 NC_016860.1 4848020 4848622 R putative cytoplasmic protein complement(4848020..4848622) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250321.1 CDS STMDT12_C46250 NC_016860.1 4848619 4849227 R putative inner membrane protein complement(4848619..4849227) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250322.1 CDS STMDT12_C46260 NC_016860.1 4849414 4849728 R molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4849414..4849728) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250323.1 CDS STMDT12_C46270 NC_016860.1 4850047 4850763 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(4850047..4850763) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250324.1 CDS STMDT12_C46280 NC_016860.1 4851323 4852948 R COG0500 SAM-dependent methyltransferases; putative SAM-dependent methyltransferase complement(4851323..4852948) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250325.1 CDS STMDT12_C46290 NC_016860.1 4852959 4853216 R COG3811 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4852959..4853216) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250326.1 CDS STMDT12_C46300 NC_016860.1 4853705 4854313 D COG4332 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein 4853705..4854313 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250327.1 CDS STMDT12_C46310 NC_016860.1 4854565 4855560 D COG1637 Predicted nuclease of the RecB family; putative inner membrane protein 4854565..4855560 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250328.1 CDS STMDT12_C46320 NC_016860.1 4855836 4856747 D hypothetical protein 4855836..4856747 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250329.1 CDS STMDT12_C46330 NC_016860.1 4857045 4857413 D COG3439 Uncharacterized conserved protein; hypothetical protein 4857045..4857413 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250330.1 CDS STMDT12_C46340 NC_016860.1 4857410 4858084 R COG0412 Dienelactone hydrolase and related enzymes; putative dienelactone hydrolase complement(4857410..4858084) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250331.1 CDS STMDT12_C46350 NC_016860.1 4858434 4859207 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor UxuR 4858434..4859207 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250332.1 CDS STMDT12_C46360 NC_016860.1 4859208 4860221 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase II complement(4859208..4860221) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250333.1 CDS STMDT12_C46370 NC_016860.1 4861023 4861469 D COG3157 Hemolysin-coregulated protein (uncharacterized); putative cytoplasmic protein 4861023..4861469 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250334.1 CDS STMDT12_C46380 NC_016860.1 4861708 4862442 D COG1794 Aspartate racemase; aspartate racemase 4861708..4862442 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250335.1 CDS STMDT12_C46390 NC_016860.1 4862448 4863356 R COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator complement(4862448..4863356) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250336.1 CDS STMDT12_C46400 NC_016860.1 4863475 4864647 R COG0044 Dihydroorotase and related cyclic amidohydrolases; isoaspartyl dipeptidase complement(4863475..4864647) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250337.1 CDS STMDT12_C46410 NC_016860.1 4864660 4865121 R COG0700 Uncharacterized membrane protein; hypothetical protein complement(4864660..4865121) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250338.1 CDS STMDT12_C46420 NC_016860.1 4865118 4865789 R COG3314 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4865118..4865789) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250339.1 CDS STMDT12_C46430 NC_016860.1 4866662 4867846 R COG0477 Permeases of the major facilitator superfamily; putative sugar transport protein complement(4866662..4867846) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250340.1 CDS STMDT12_C46440 NC_016860.1 4868066 4869337 R COG2733 Predicted membrane protein; putative inner membrane protein complement(4868066..4869337) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250341.1 CDS STMDT12_C46450 NC_016860.1 4869424 4870665 R COG0477 Permeases of the major facilitator superfamily; putative sugar transport protein complement(4869424..4870665) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250342.1 CDS STMDT12_C46460 NC_016860.1 4871144 4871659 D putative inner membrane protein 4871144..4871659 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250343.1 CDS STMDT12_C46470 NC_016860.1 4871656 4871769 R hypothetical protein complement(4871656..4871769) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250344.1 CDS STMDT12_C46480 NC_016860.1 4871840 4873210 D COG1012 NAD-dependent aldehyde dehydrogenases; putative NAD-dependent aldehyde dehydrogenase 4871840..4873210 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250345.1 CDS STMDT12_C46490 NC_016860.1 4873415 4873579 D hypothetical protein 4873415..4873579 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250346.1 CDS STMDT12_C46500 NC_016860.1 4873654 4874355 R putative inner membrane protein complement(4873654..4874355) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250347.1 CDS STMDT12_C46510 NC_016860.1 4874429 4874761 R endoribonuclease SymE complement(4874429..4874761) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250348.1 CDS STMDT12_C46520 NC_016860.1 4874988 4876397 R COG0732 Restriction endonuclease S subunits; type I restriction enzyme StySJI specificity protein complement(4874988..4876397) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250349.1 CDS STMDT12_C46530 NC_016860.1 4876394 4877983 R COG0286 Type I restriction-modification system methyltransferase subunit; DNA methylase M complement(4876394..4877983) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250350.1 CDS hsdR NC_016860.1 4878141 4881650 R COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme EcoKI subunit R complement(4878141..4881650) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250351.1 CDS STMDT12_C46550 NC_016860.1 4881848 4882762 D COG1715 Restriction endonuclease; Mrr restriction system protein 4881848..4882762 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250352.1 CDS STMDT12_C46560 NC_016860.1 4883031 4883318 D COG2929 Uncharacterized protein conserved in bacteria; hypothetical protein 4883031..4883318 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250353.1 CDS STMDT12_C46570 NC_016860.1 4883305 4883607 D COG3514 Uncharacterized protein conserved in bacteria; hypothetical protein 4883305..4883607 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250354.1 CDS STMDT12_C46580 NC_016860.1 4883682 4884638 R COG0523 Putative GTPases (G3E family); putative GTP-binding protein YjiA complement(4883682..4884638) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250355.1 CDS STMDT12_C46590 NC_016860.1 4884649 4884852 R COG2879 Uncharacterized small protein; hypothetical protein complement(4884649..4884852) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250356.1 CDS STMDT12_C46600 NC_016860.1 4884947 4887097 R COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein complement(4884947..4887097) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250357.1 CDS STMDT12_C46610 NC_016860.1 4887464 4889125 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein I 4887464..4889125 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250358.1 CDS STMDT12_C46620 NC_016860.1 4889449 4892214 D COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; putative transcriptional regulator 4889449..4892214 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250359.1 CDS STMDT12_C46630 NC_016860.1 4892316 4892738 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS system IIA protein 4892316..4892738 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250360.1 CDS STMDT12_C46640 NC_016860.1 4892753 4893214 D COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system IIB protein 4892753..4893214 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250361.1 CDS STMDT12_C46650 NC_016860.1 4893240 4894019 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system IIC protein 4893240..4894019 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250362.1 CDS STMDT12_C46660 NC_016860.1 4893997 4894845 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; fructose-specific PTS system IID protein 4893997..4894845 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250363.1 CDS STMDT12_C46670 NC_016860.1 4894858 4895919 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 4894858..4895919 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250364.1 CDS STMDT12_C46680 NC_016860.1 4895937 4896947 D COG2222 Predicted phosphosugar isomerases; putative sugar isomerase 4895937..4896947 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250365.1 CDS STMDT12_C46690 NC_016860.1 4897081 4899372 R COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; phosphoglycerol transferase I complement(4897081..4899372) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250366.1 CDS STMDT12_C46700 NC_016860.1 4899655 4900116 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; hypothetical protein complement(4899655..4900116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250367.1 CDS STMDT12_C46710 NC_016860.1 4900174 4900911 R COG1484 DNA replication protein; DNA replication protein DnaC complement(4900174..4900911) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250368.1 CDS STMDT12_C46720 NC_016860.1 4900914 4901453 R primosomal protein DnaI complement(4900914..4901453) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250369.1 CDS STMDT12_C46730 NC_016860.1 4901546 4902019 R COG3610 Uncharacterized conserved protein; hypothetical protein complement(4901546..4902019) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250370.1 CDS STMDT12_C46740 NC_016860.1 4902010 4902954 R COG2966 Uncharacterized conserved protein; hypothetical protein complement(4902010..4902954) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250371.1 CDS STMDT12_C46750 NC_016860.1 4903499 4904224 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; LuxR family transcriptional regulator 4903499..4904224 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250372.1 CDS STMDT12_C46760 NC_016860.1 4904185 4904859 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator BglJ 4904185..4904859 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250373.1 CDS STMDT12_C46770 NC_016860.1 4904910 4905368 R COG2606 Uncharacterized conserved protein; YbaK/prolyl-tRNA synthetase domain-containing protein complement(4904910..4905368) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250374.1 CDS STMDT12_C46780 NC_016860.1 4905519 4906307 R COG4114 Uncharacterized Fe-S protein; ferric iron reductase complement(4905519..4906307) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250375.1 CDS STMDT12_C46790 NC_016860.1 4906428 4907492 R COG2199 FOG: GGDEF domain; hypothetical protein complement(4906428..4907492) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250376.1 CDS STMDT12_C46800 NC_016860.1 4907704 4907979 D putative inner membrane protein 4907704..4907979 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250377.1 CDS rsmC NC_016860.1 4908520 4909548 R COG2813 16S RNA G1207 methylase RsmC; 16S rRNA methyltransferase C complement(4908520..4909548) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250378.1 CDS STMDT12_C46820 NC_016860.1 4909651 4910088 D COG3050 DNA polymerase III, psi subunit; DNA polymerase III subunit psi 4909651..4910088 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250379.1 CDS rimI NC_016860.1 4910033 4910479 D COG0456 Acetyltransferases; ribosomal-protein-alanine N-acetyltransferase 4910033..4910479 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250380.1 CDS STMDT12_C46840 NC_016860.1 4910498 4911178 D COG1011 Predicted hydrolase (HAD superfamily); nucleotidase 4910498..4911178 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250381.1 CDS prfC NC_016860.1 4911270 4912859 D COG4108 Peptide chain release factor RF-3; peptide chain release factor 3 4911270..4912859 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250382.1 CDS STMDT12_C46860 NC_016860.1 4913261 4913878 D COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein 4913261..4913878 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250383.1 CDS STMDT12_C46870 NC_016860.1 4914007 4914168 D hypothetical protein 4914007..4914168 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250384.1 CDS STMDT12_C46880 NC_016860.1 4914292 4915365 D COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; putative phosphoesterase 4914292..4915365 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250385.1 CDS STMDT12_C46890 NC_016860.1 4915362 4916135 D COG0084 Mg-dependent DNase; putative deoxyribonuclease YjjV 4915362..4916135 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250386.1 CDS STMDT12_C46900 NC_016860.1 4916168 4917031 R COG1180 Pyruvate-formate lyase-activating enzyme; putative pyruvate formate lyase activating enzyme complement(4916168..4917031) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250387.1 CDS STMDT12_C46910 NC_016860.1 4917003 4918553 R COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; hypothetical protein complement(4917003..4918553) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250388.1 CDS STMDT12_C46920 NC_016860.1 4918795 4919592 D COG0274 Deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 4918795..4919592 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250389.1 CDS deoA NC_016860.1 4919716 4921038 D COG0213 Thymidine phosphorylase; thymidine phosphorylase 4919716..4921038 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250390.1 CDS STMDT12_C46940 NC_016860.1 4921090 4922313 D COG1015 Phosphopentomutase; phosphopentomutase 4921090..4922313 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250391.1 CDS deoD NC_016860.1 4922523 4923242 D COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 4922523..4923242 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250392.1 CDS STMDT12_C46960 NC_016860.1 4923280 4923852 R putative outer membrane protein complement(4923280..4923852) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250393.1 CDS STMDT12_C46970 NC_016860.1 4923849 4926257 R COG3188 P pilus assembly protein, porin PapC; fimbrial usher protein complement(4923849..4926257) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250394.1 CDS STMDT12_C46980 NC_016860.1 4926271 4926978 R COG3121 P pilus assembly protein, chaperone PapD; putative periplasmic chaperone protein complement(4926271..4926978) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250395.1 CDS STMDT12_C46990 NC_016860.1 4927056 4927745 R putative outer membrane protein complement(4927056..4927745) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250396.1 CDS STMDT12_C47000 NC_016860.1 4927793 4928482 R putative outer membrane protein complement(4927793..4928482) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250397.1 CDS lplA NC_016860.1 4928795 4929811 R COG0095 Lipoate-protein ligase A; lipoate-protein ligase A complement(4928795..4929811) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250398.1 CDS STMDT12_C47020 NC_016860.1 4929845 4930489 R COG3726 Uncharacterized membrane protein affecting hemolysin expression; hypothetical protein complement(4929845..4930489) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250399.1 CDS serB NC_016860.1 4930606 4931574 D COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 4930606..4931574 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250400.1 CDS STMDT12_C47040 NC_016860.1 4931658 4933040 D COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 4931658..4933040 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250401.1 CDS STMDT12_C47050 NC_016860.1 4933191 4934423 D COG1396 Predicted transcriptional regulators; nicotinamide-nucleotide adenylyltransferase 4933191..4934423 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250402.1 CDS STMDT12_C47060 NC_016860.1 4934541 4936208 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; putative ABC transporter ATP-binding protein complement(4934541..4936208) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250403.1 CDS STMDT12_C47070 NC_016860.1 4936417 4938354 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 4936417..4938354 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250404.1 CDS STMDT12_C47080 NC_016860.1 4938412 4938738 D COG2973 Trp operon repressor; Trp operon repressor 4938412..4938738 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250405.1 CDS STMDT12_C47090 NC_016860.1 4938840 4939355 R COG1986 Uncharacterized conserved protein; NTPase complement(4938840..4939355) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250406.1 CDS STMDT12_C47100 NC_016860.1 4939404 4940051 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 4939404..4940051 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250407.1 CDS STMDT12_C47110 NC_016860.1 4940048 4940917 R COG2207 AraC-type DNA-binding domain-containing proteins; right origin-binding protein complement(4940048..4940917) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250408.1 CDS STMDT12_C47120 NC_016860.1 4941114 4941602 D COG3045 Uncharacterized protein conserved in bacteria; hypothetical protein 4941114..4941602 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250409.1 CDS STMDT12_C47130 NC_016860.1 4941615 4942304 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator CreB 4941615..4942304 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250410.1 CDS STMDT12_C47140 NC_016860.1 4942304 4943728 D COG0642 Signal transduction histidine kinase; sensor kinase CreC 4942304..4943728 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250411.1 CDS STMDT12_C47150 NC_016860.1 4943786 4945135 D COG4452 Inner membrane protein involved in colicin E2 resistance; hypothetical protein 4943786..4945135 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250412.1 CDS STMDT12_C47160 NC_016860.1 4945193 4946278 R COG3539 P pilus assembly protein, pilin FimA; putative major fimbrial subunit complement(4945193..4946278) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250413.1 CDS STMDT12_C47170 NC_016860.1 4946319 4946876 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial protein complement(4946319..4946876) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250414.1 CDS STMDT12_C47180 NC_016860.1 4946894 4949323 R COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein complement(4946894..4949323) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250415.1 CDS STMDT12_C47190 NC_016860.1 4949477 4950160 R COG3121 P pilus assembly protein, chaperone PapD; pili assembly chaperone complement(4949477..4950160) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250416.1 CDS STMDT12_C47200 NC_016860.1 4950231 4950776 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial protein complement(4950231..4950776) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250417.1 CDS STMDT12_C47210 NC_016860.1 4951115 4951786 R COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; putative inner membrane protein complement(4951115..4951786) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250418.1 CDS STMDT12_C47220 NC_016860.1 4952752 4953468 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(4952752..4953468) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250419.1 CDS STMDT12_C47230 NC_016860.1 4954104 4954790 D COG0565 rRNA methylase; putative RNA methyltransferase 4954104..4954790 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250420.1 CDS STMDT12_L00010 NC_016861.1 94 378 D putative frameshift mutation; dsba oxidoreductase 94..378 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250421.1 CDS STMDT12_L00020 NC_016861.1 391 546 D putative frameshift mutation; dsba oxidoreductase 391..546 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250422.1 CDS STMDT12_L00030 NC_016861.1 712 972 D putative frameshift mutation; putative phospholipase D 712..972 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250423.1 CDS STMDT12_L00040 NC_016861.1 975 1154 D COG1502 Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes; putative frameshift mutation; putative phospholipase D 975..1154 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250424.1 CDS STMDT12_L00050 NC_016861.1 1354 1599 D replication protein 1354..1599 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250425.1 CDS STMDT12_L00060 NC_016861.1 1919 2788 D replication protein 1919..2788 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250426.1 CDS STMDT12_L00070 NC_016861.1 3729 3869 D COG3204 Uncharacterized protein conserved in bacteria; putative outer membrane protein 3729..3869 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250427.1 CDS STMDT12_L00080 NC_016861.1 3966 4724 R COG2207 AraC-type DNA-binding domain-containing proteins; putative AraC family transcriptional regulator complement(3966..4724) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250428.1 CDS STMDT12_L00090 NC_016861.1 4991 5548 R COG3637 Opacity protein and related surface antigens; resistance to complement killing complement(4991..5548) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250429.1 CDS STMDT12_L00100 NC_016861.1 5638 6483 R COG3204 Uncharacterized protein conserved in bacteria; putative outer membrane protein complement(5638..6483) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250430.1 CDS STMDT12_L00110 NC_016861.1 6534 6680 R hypothetical protein complement(6534..6680) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250431.1 CDS STMDT12_L00120 NC_016861.1 6670 7323 R COG0526 Thiol-disulfide isomerase and thioredoxins; putative thiol-disulfide isomerase/thioredoxin complement(6670..7323) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250432.1 CDS STMDT12_L00130 NC_016861.1 7568 7918 R COG2771 DNA-binding HTH domain-containing proteins; putative LuxR-family transcriptional regulator complement(7568..7918) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250433.1 CDS STMDT12_L00140 NC_016861.1 7903 8115 R plasmid-encoded fimbriae complement(7903..8115) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250434.1 CDS STMDT12_L00150 NC_016861.1 9675 10205 R putative outer membrane protein complement(9675..10205) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250435.1 CDS STMDT12_L00160 NC_016861.1 10247 10939 R COG3121 P pilus assembly protein, chaperone PapD; chaperone protein complement(10247..10939) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250436.1 CDS STMDT12_L00170 NC_016861.1 10932 13340 R COG3188 P pilus assembly protein, porin PapC; plasmid-encoded fimbrial usher protein complement(10932..13340) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250437.1 CDS STMDT12_L00180 NC_016861.1 13424 13540 D hypothetical protein 13424..13540 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250438.1 CDS STMDT12_L00190 NC_016861.1 13568 14086 R plasmid-encoded major fimbrial subunit complement(13568..14086) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250439.1 CDS STMDT12_L00200 NC_016861.1 14361 14663 R fimbrial regulator complement(14361..14663) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250440.1 CDS STMDT12_L00210 NC_016861.1 15554 15763 D COG3111 Uncharacterized conserved protein; protein YgiW 15554..15763 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250441.1 CDS STMDT12_L00220 NC_016861.1 16266 16376 D resolvase 16266..16376 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250442.1 CDS STMDT12_L00230 NC_016861.1 16635 17624 R DNA replication protein complement(16635..17624) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250443.1 CDS STMDT12_L00240 NC_016861.1 18118 18414 R putative cytoplasmic protein complement(18118..18414) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250444.1 CDS STMDT12_L00250 NC_016861.1 18534 18647 D hypothetical protein 18534..18647 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250445.1 CDS STMDT12_L00260 NC_016861.1 18898 19386 R hypothetical protein complement(18898..19386) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250446.1 CDS STMDT12_L00270 NC_016861.1 20095 20313 D COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid; plasmid maintenance protein CcdA 20095..20313 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250447.1 CDS STMDT12_L00280 NC_016861.1 20315 20620 D plasmid maintenance protein CcdB 20315..20620 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250448.1 CDS STMDT12_L00290 NC_016861.1 20622 20912 D hypothetical protein 20622..20912 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250449.1 CDS STMDT12_L00300 NC_016861.1 20909 21430 D hypothetical protein 20909..21430 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250450.1 CDS STMDT12_L00310 NC_016861.1 21465 22247 D COG0582 Integrase; resolvase 21465..22247 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250451.1 CDS STMDT12_L00320 NC_016861.1 22256 22807 D COG2200 FOG: EAL domain; diguanylate cyclase 22256..22807 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250452.1 CDS STMDT12_L00330 NC_016861.1 22973 23482 D putative inner membrane protein 22973..23482 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250453.1 CDS STMDT12_L00340 NC_016861.1 23476 23961 D putative inner membrane protein 23476..23961 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250454.1 CDS STMDT12_L00350 NC_016861.1 23988 24158 D Orf9 23988..24158 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250455.1 CDS STMDT12_L00360 NC_016861.1 24214 24801 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 24214..24801 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250456.1 CDS STMDT12_L00370 NC_016861.1 24825 25241 D putative adhesin 24825..25241 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250457.1 CDS STMDT12_L00380 NC_016861.1 25308 25658 R COG0675 Transposase and inactivated derivatives; putative transposase complement(25308..25658) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250458.1 CDS STMDT12_L00390 NC_016861.1 25897 26139 D COG1943 Transposase and inactivated derivatives; putative transposase 25897..26139 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250459.1 CDS STMDT12_L00400 NC_016861.1 26266 26916 R virulence protein SpvD complement(26266..26916) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250460.1 CDS STMDT12_L00410 NC_016861.1 27177 27902 R SpvC complement(27177..27902) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250461.1 CDS STMDT12_L00420 NC_016861.1 28184 29959 R COG5585 NAD+--asparagine ADP-ribosyltransferase; virulence protein SpvD complement(28184..29959) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250462.1 CDS STMDT12_L00430 NC_016861.1 30011 30178 R hypothetical protein complement(30011..30178) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250463.1 CDS STMDT12_L00440 NC_016861.1 30141 30908 R 28.1 kDa virulence protein complement(30141..30908) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250464.1 CDS STMDT12_L00450 NC_016861.1 31082 31246 R COG3772 Phage-related lysozyme (muraminidase); lysozyme complement(31082..31246) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250465.1 CDS STMDT12_L00460 NC_016861.1 31420 32313 R COG0583 Transcriptional regulator; virulence genes transcriptional activator complement(31420..32313) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250466.1 CDS STMDT12_L00470 NC_016861.1 32922 33959 D COG3335 Transposase and inactivated derivatives; putative integrase 32922..33959 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250467.1 CDS STMDT12_L00480 NC_016861.1 34148 35116 R COG3267 Type II secretory pathway, component ExeA (predicted ATPase); phosphoribulokinase/uridine kinase family protein complement(34148..35116) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250468.1 CDS STMDT12_L00490 NC_016861.1 35106 36770 R COG2801 Transposase and inactivated derivatives; integrase, catalytic region complement(35106..36770) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250469.1 CDS STMDT12_L00500 NC_016861.1 36754 37029 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; transposase insertion; putative resolvase complement(36754..37029) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250470.1 CDS STMDT12_L00510 NC_016861.1 37106 37810 R COG3316 Transposase and inactivated derivatives; IS26 transposase complement(37106..37810) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250471.1 CDS STMDT12_L00520 NC_016861.1 37857 37979 R putative transposase complement(37857..37979) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250472.1 CDS STMDT12_L00530 NC_016861.1 38097 39233 R hypothetical protein complement(38097..39233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250473.1 CDS STMDT12_L00540 NC_016861.1 39284 39511 R hypothetical protein complement(39284..39511) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250474.1 CDS STMDT12_L00550 NC_016861.1 40208 40750 R COG0194 Guanylate kinase; hypothetical protein complement(40208..40750) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250475.1 CDS STMDT12_L00560 NC_016861.1 40763 41623 R COG2746 Aminoglycoside N3'-acetyltransferase; aminoglycoside 3-N-acetyltransferase complement(40763..41623) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250476.1 CDS STMDT12_L00570 NC_016861.1 41856 42560 D COG3316 Transposase and inactivated derivatives; IS26 transposase 41856..42560 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250477.1 CDS STMDT12_L00580 NC_016861.1 42612 42725 R COG1695 Predicted transcriptional regulators; hypothetical protein complement(42612..42725) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250478.1 CDS STMDT12_L00590 NC_016861.1 42736 43941 R COG2059 Chromate transport protein ChrA; chromate transport protein complement(42736..43941) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250479.1 CDS STMDT12_L00600 NC_016861.1 44097 44300 R hypothetical protein complement(44097..44300) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250480.1 CDS STMDT12_L00610 NC_016861.1 44337 44498 D hypothetical protein 44337..44498 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250481.1 CDS STMDT12_L00620 NC_016861.1 44428 45267 R COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase complement(44428..45267) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250482.1 CDS STMDT12_L00630 NC_016861.1 45261 45608 R COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux protein complement(45261..45608) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250483.1 CDS STMDT12_L00640 NC_016861.1 45772 46563 R COG1708 Predicted nucleotidyltransferases; aminoglycoside resistance protein complement(45772..46563) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250484.1 CDS STMDT12_L00650 NC_016861.1 46569 46859 R hypothetical protein complement(46569..46859) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250485.1 CDS STMDT12_L00660 NC_016861.1 46971 47468 R COG0262 Dihydrofolate reductase; dihydrofolate reductase complement(46971..47468) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250486.1 CDS STMDT12_L00670 NC_016861.1 47613 48626 D COG0582 Integrase; IntI1 47613..48626 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250487.1 CDS STMDT12_L00680 NC_016861.1 48595 48867 D COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; transposon Tn21 modulator protein 48595..48867 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250488.1 CDS STMDT12_L00690 NC_016861.1 48901 49605 R COG3316 Transposase and inactivated derivatives; IS26 transposase complement(48901..49605) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250489.1 CDS STMDT12_L00700 NC_016861.1 49617 49937 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; transposase insertion; putative resolvase complement(49617..49937) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250490.1 CDS STMDT12_L00710 NC_016861.1 50144 50884 R COG0288 Carbonic anhydrase; putative carbonic anhydrase complement(50144..50884) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250491.1 CDS STMDT12_L00720 NC_016861.1 51377 51469 D hypothetical protein 51377..51469 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250492.1 CDS STMDT12_L00730 NC_016861.1 51539 52027 R hypothetical protein complement(51539..52027) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250493.1 CDS STMDT12_L00740 NC_016861.1 52286 53401 D alpha-helical coiled coil protein 52286..53401 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250494.1 CDS STMDT12_L00750 NC_016861.1 53394 53903 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; protein YacC 53394..53903 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250495.1 CDS STMDT12_L00760 NC_016861.1 54006 54422 D hypothetical protein 54006..54422 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250496.1 CDS STMDT12_L00770 NC_016861.1 54479 55045 D hypothetical protein 54479..55045 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250497.1 CDS STMDT12_L00780 NC_016861.1 55077 56018 R COG5464 Uncharacterized conserved protein; putative transposase complement(55077..56018) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250498.1 CDS STMDT12_L00790 NC_016861.1 56433 57638 D COG1192 ATPases involved in chromosome partitioning; plasmid partition protein A 56433..57638 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250499.1 CDS STMDT12_L00800 NC_016861.1 57638 58612 D COG1475 Predicted transcriptional regulators; plasmid partition protein B 57638..58612 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250500.1 CDS umuC NC_016861.1 58694 59968 R COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC complement(58694..59968) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250501.1 CDS STMDT12_L00820 NC_016861.1 59968 60390 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); protein SamA complement(59968..60390) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250502.1 CDS STMDT12_L00830 NC_016861.1 60901 61371 D hypothetical protein 60901..61371 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250503.1 CDS STMDT12_L00840 NC_016861.1 61364 61720 D putative cytoplasmic protein 61364..61720 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250504.1 CDS STMDT12_L00850 NC_016861.1 61769 61957 D hypothetical protein 61769..61957 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250505.1 CDS STMDT12_L00860 NC_016861.1 62102 62782 D COG0863 DNA modification methylase; putative methylase 62102..62782 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250506.1 CDS STMDT12_L00870 NC_016861.1 62782 63003 D putative cytoplasmic protein 62782..63003 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250507.1 CDS STMDT12_L00880 NC_016861.1 63059 63472 D hypothetical protein 63059..63472 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250508.1 CDS STMDT12_L00890 NC_016861.1 63544 64308 D putative inner membrane protein 63544..64308 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250509.1 CDS STMDT12_L00900 NC_016861.1 64804 65238 D hypothetical protein 64804..65238 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250510.1 CDS STMDT12_L00910 NC_016861.1 65305 65739 D hypothetical protein 65305..65739 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250511.1 CDS STMDT12_L00920 NC_016861.1 65975 66298 D putative inner membrane protein 65975..66298 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250512.1 CDS STMDT12_L00930 NC_016861.1 66981 67499 D COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 66981..67499 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250513.1 CDS STMDT12_L00940 NC_016861.1 67554 67796 D putative cytoplasmic protein 67554..67796 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250514.1 CDS STMDT12_L00950 NC_016861.1 67865 69862 D COG1475 Predicted transcriptional regulators; putative DNA-binding protein 67865..69862 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250515.1 CDS psiB NC_016861.1 69905 70336 D plasmid SOS inhibition protein B 69905..70336 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250516.1 CDS STMDT12_L00970 NC_016861.1 70333 71070 D plasmid SOS inhibition protein A 70333..71070 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250517.1 CDS STMDT12_L00980 NC_016861.1 71105 71233 D hypothetical protein 71105..71233 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250518.1 CDS STMDT12_L00990 NC_016861.1 71319 71477 D hypothetical protein 71319..71477 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250519.1 CDS STMDT12_L01000 NC_016861.1 71580 71849 D hypothetical protein 71580..71849 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250520.1 CDS STMDT12_L01010 NC_016861.1 71896 72186 D hypothetical protein 71896..72186 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250521.1 CDS STMDT12_L01020 NC_016861.1 72709 73233 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative transglycosylase complement(72709..73233) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250522.1 CDS STMDT12_L01030 NC_016861.1 73594 73974 D conjugal transfer protein TraM 73594..73974 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250523.1 CDS STMDT12_L01040 NC_016861.1 74167 74853 D COG0197 Ribosomal protein L16/L10E; conjugal transfer regulatory protein 74167..74853 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250524.1 CDS STMDT12_L01050 NC_016861.1 74854 75174 D conjugal transfer protein TraY 74854..75174 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250525.1 CDS STMDT12_L01060 NC_016861.1 75216 75578 D conjugal transfer pilin subunit TraA 75216..75578 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250526.1 CDS STMDT12_L01070 NC_016861.1 75593 75904 D conjugal transfer pilus assembly protein TraL 75593..75904 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250527.1 CDS STMDT12_L01080 NC_016861.1 75926 76492 D conjugal transfer pilus assembly protein TraE 75926..76492 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250528.1 CDS STMDT12_L01090 NC_016861.1 76479 77219 D conjugal transfer protein TraK 76479..77219 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250529.1 CDS STMDT12_L01100 NC_016861.1 77219 78640 D COG0419 ATPase involved in DNA repair; conjugal transfer pilus assembly protein TraB 77219..78640 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250530.1 CDS STMDT12_L01110 NC_016861.1 78630 79226 D conjugal transfer protein TraP 78630..79226 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250531.1 CDS STMDT12_L01120 NC_016861.1 79213 79449 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; conjugal transfer protein TrbD 79213..79449 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250532.1 CDS STMDT12_L01130 NC_016861.1 79446 79961 D conjugal transfer protein TraV 79446..79961 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250533.1 CDS STMDT12_L01140 NC_016861.1 80096 80317 D COG1734 DnaK suppressor protein; conjugal transfer protein TraR 80096..80317 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250534.1 CDS STMDT12_L01150 NC_016861.1 80310 80777 D conjugal transfer protein 80310..80777 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250535.1 CDS STMDT12_L01160 NC_016861.1 80774 80893 D hypothetical protein 80774..80893 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250536.1 CDS STMDT12_L01170 NC_016861.1 80894 81157 D putative inner membrane protein 80894..81157 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250537.1 CDS STMDT12_L01180 NC_016861.1 81173 83821 D COG3451 Type IV secretory pathway, VirB4 components; conjugal transfer ATP-binding protein TraC 81173..83821 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250538.1 CDS STMDT12_L01190 NC_016861.1 83796 84182 D conjugal transfer protein TrbI 83796..84182 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250539.1 CDS STMDT12_L01200 NC_016861.1 84179 84811 D conjugal transfer pilus assembly protein TraW 84179..84811 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250540.1 CDS STMDT12_L01210 NC_016861.1 84808 85800 D conjugal transfer pilus assembly protein TraU 84808..85800 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250541.1 CDS STMDT12_L01220 NC_016861.1 85825 86127 D conjugal transfer protein 85825..86127 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250542.1 CDS STMDT12_L01230 NC_016861.1 86112 86750 D conjugal transfer pilus assembly protein TrbC 86112..86750 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250543.1 CDS STMDT12_L01240 NC_016861.1 86787 87206 D putative HNH endonuclease 86787..87206 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250544.1 CDS STMDT12_L01250 NC_016861.1 87203 89029 D conjugal transfer mating pair stabilization protein TraN 87203..89029 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250545.1 CDS STMDT12_L01260 NC_016861.1 89040 89255 D conjugal transfer protein TrbE 89040..89255 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250546.1 CDS STMDT12_L01270 NC_016861.1 89267 90016 D conjugal pilus assembly protein TraF 89267..90016 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250547.1 CDS STMDT12_L01280 NC_016861.1 90230 90523 D conjugal transfer pilin chaperone TraQ 90230..90523 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250548.1 CDS STMDT12_L01290 NC_016861.1 90510 91058 D conjugal transfer protein TrbB 90510..91058 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250549.1 CDS STMDT12_L01300 NC_016861.1 91048 92430 D conjugal transfer pilus assembly protein TraH 91048..92430 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250550.1 CDS STMDT12_L01310 NC_016861.1 92427 95249 D conjugal transfer mating pair stabilization protein TraG 92427..95249 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250551.1 CDS STMDT12_L01320 NC_016861.1 95271 95759 D entry exclusion protein 95271..95759 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250552.1 CDS STMDT12_L01330 NC_016861.1 95795 96526 D conjugal transfer surface exclusion protein TraT 95795..96526 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250553.1 CDS STMDT12_L01340 NC_016861.1 96903 99137 D COG3505 Type IV secretory pathway, VirD4 components; conjugal transfer protein TraD 96903..99137 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250554.1 CDS STMDT12_L01350 NC_016861.1 99146 99544 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein complement(99146..99544) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250555.1 CDS STMDT12_L01360 NC_016861.1 99544 99771 R COG4456 Virulence-associated protein and related proteins; putative cytoplasmic protein complement(99544..99771) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250556.1 CDS STMDT12_L01370 NC_016861.1 99853 105111 D COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; conjugal transfer nickase/helicase TraI 99853..105111 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250557.1 CDS STMDT12_L01380 NC_016861.1 105131 105871 D conjugal transfer pilus acetylation protein TraX 105131..105871 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250558.1 CDS STMDT12_L01390 NC_016861.1 105926 106489 D conjugal transfer fertility inhibition protein FinO 105926..106489 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250559.1 CDS STMDT12_S00010 NC_016862.1 1 213 D hypothetical protein 1..213 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250560.1 CDS STMDT12_S00020 NC_016862.1 206 421 D repressor protein F 206..421 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250561.1 CDS STMDT12_S00030 NC_016862.1 451 1290 D COG3598 RecA-family ATPase; replication protein A 451..1290 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250562.1 CDS STMDT12_S00040 NC_016862.1 1277 2230 D replication protein C 1277..2230 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250563.1 CDS STMDT12_S00050 NC_016862.1 2418 3233 D dihydropteroate synthase 2418..3233 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250564.1 CDS STMDT12_S00070 NC_016862.1 3294 4097 D COG3231 Aminoglycoside phosphotransferase; hypothetical protein 3294..4097 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250565.1 CDS STMDT12_S00080 NC_016862.1 4097 4933 D COG3570 Streptomycin 6-kinase; streptomycin phosphotransferase 4097..4933 Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250566.1 CDS STMDT12_S00090 NC_016862.1 4905 5444 R transposase complement(4905..5444) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250567.1 CDS STMDT12_S00100 NC_016862.1 5998 6282 R mobilization protein C complement(5998..6282) Salmonella enterica subsp. enterica serovar Typhimurium str. YP_005250568.1 CDS STMDT12_S00110 NC_016862.1 6481 8610 D mobilization protein A 6481..8610 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0010 tRNA STMDT12_Ct0010 NC_016860.1 290791 290867 D tRNA-Ile 290791..290867 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0020 tRNA STMDT12_Ct0020 NC_016860.1 290977 291052 D tRNA-Ala 290977..291052 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0030 tRNA STMDT12_Ct0030 NC_016860.1 294829 294905 D tRNA-Asp 294829..294905 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0040 tRNA STMDT12_Ct0040 NC_016860.1 304268 304344 D tRNA-Asp 304268..304344 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0050 tRNA STMDT12_Ct0050 NC_016860.1 368797 368872 D tRNA-Thr 368797..368872 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0060 tRNA STMDT12_Ct0060 NC_016860.1 651605 651681 D tRNA-Arg 651605..651681 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0070 tRNA STMDT12_Ct0070 NC_016860.1 656031 656103 D tRNA-OTHER 656031..656103 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0080 tRNA STMDT12_Ct0080 NC_016860.1 776061 776135 R tRNA-Gln complement(776061..776135) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0090 tRNA STMDT12_Ct0090 NC_016860.1 776179 776253 R tRNA-Gln complement(776179..776253) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0100 tRNA STMDT12_Ct0100 NC_016860.1 776300 776376 R tRNA-Met complement(776300..776376) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0110 tRNA STMDT12_Ct0110 NC_016860.1 776392 776466 R tRNA-Gln complement(776392..776466) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0120 tRNA STMDT12_Ct0120 NC_016860.1 776502 776576 R tRNA-Gln complement(776502..776576) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0130 tRNA STMDT12_Ct0130 NC_016860.1 776600 776684 R tRNA-Leu complement(776600..776684) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0140 tRNA STMDT12_Ct0140 NC_016860.1 776693 776769 R tRNA-Met complement(776693..776769) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0150 tRNA STMDT12_Ct0150 NC_016860.1 857608 857683 D tRNA-Lys 857608..857683 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0160 tRNA STMDT12_Ct0160 NC_016860.1 857815 857890 D tRNA-Val 857815..857890 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0170 tRNA STMDT12_Ct0170 NC_016860.1 857894 857969 D tRNA-Lys 857894..857969 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0180 tRNA STMDT12_Ct0180 NC_016860.1 858019 858094 D tRNA-Lys 858019..858094 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0190 tRNA STMDT12_Ct0190 NC_016860.1 858229 858304 D tRNA-Lys 858229..858304 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0200 tRNA STMDT12_Ct0200 NC_016860.1 1025101 1025188 R tRNA-Ser complement(1025101..1025188) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0210 tRNA STMDT12_Ct0210 NC_016860.1 1173007 1173094 D tRNA-Ser 1173007..1173094 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0220 tRNA STMDT12_Ct0220 NC_016860.1 1222428 1222515 R tRNA-Ser complement(1222428..1222515) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0230 tRNA STMDT12_Ct0230 NC_016860.1 1330901 1330977 D tRNA-Arg 1330901..1330977 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0240 tRNA STMDT12_Ct0240 NC_016860.1 1343338 1343414 D tRNA-Arg 1343338..1343414 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0250 tRNA STMDT12_Ct0250 NC_016860.1 1499334 1499410 R tRNA-Val complement(1499334..1499410) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0260 tRNA STMDT12_Ct0260 NC_016860.1 1499421 1499497 R tRNA-Val complement(1499421..1499497) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0270 tRNA STMDT12_Ct0270 NC_016860.1 1850260 1850344 D tRNA-Tyr 1850260..1850344 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0280 tRNA STMDT12_Ct0280 NC_016860.1 1850549 1850633 D tRNA-Tyr 1850549..1850633 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0290 tRNA STMDT12_Ct0290 NC_016860.1 2030903 2030989 R tRNA-Leu complement(2030903..2030989) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0300 tRNA STMDT12_Ct0300 NC_016860.1 2031001 2031074 R tRNA-Cys complement(2031001..2031074) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0310 tRNA STMDT12_Ct0310 NC_016860.1 2031127 2031202 R tRNA-Gly complement(2031127..2031202) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0320 tRNA STMDT12_Ct0320 NC_016860.1 2077714 2077803 R tRNA-Ser complement(2077714..2077803) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0330 tRNA STMDT12_Ct0330 NC_016860.1 2078790 2078865 D tRNA-Asn 2078790..2078865 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0340 tRNA STMDT12_Ct0340 NC_016860.1 2079760 2079835 D tRNA-Asn 2079760..2079835 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0350 tRNA STMDT12_Ct0350 NC_016860.1 2089702 2089777 R tRNA-Asn complement(2089702..2089777) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0360 tRNA STMDT12_Ct0360 NC_016860.1 2091535 2091610 D tRNA-Asn 2091535..2091610 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0370 tRNA STMDT12_Ct0370 NC_016860.1 2326297 2326373 D tRNA-Pro 2326297..2326373 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0380 tRNA STMDT12_Ct0380 NC_016860.1 2501367 2501441 D tRNA-Arg 2501367..2501441 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0390 tRNA STMDT12_Ct0390 NC_016860.1 2524481 2524556 R tRNA-Ala complement(2524481..2524556) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0400 tRNA STMDT12_Ct0400 NC_016860.1 2527262 2527337 D tRNA-Val 2527262..2527337 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0410 tRNA STMDT12_Ct0410 NC_016860.1 2527383 2527458 D tRNA-Val 2527383..2527458 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0420 tRNA STMDT12_Ct0420 NC_016860.1 2527500 2527575 D tRNA-Val 2527500..2527575 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0430 tRNA STMDT12_Ct0430 NC_016860.1 2527580 2527655 D tRNA-Lys 2527580..2527655 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0440 tRNA STMDT12_Ct0440 NC_016860.1 2757056 2757132 R tRNA-Arg complement(2757056..2757132) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0450 tRNA STMDT12_Ct0450 NC_016860.1 2795359 2795434 R tRNA-Glu complement(2795359..2795434) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0460 tRNA STMDT12_Ct0460 NC_016860.1 2993493 2993569 R tRNA-Arg complement(2993493..2993569) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0470 tRNA STMDT12_Ct0470 NC_016860.1 2993763 2993839 R tRNA-Arg complement(2993763..2993839) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0480 tRNA STMDT12_Ct0480 NC_016860.1 2993902 2993978 R tRNA-Arg complement(2993902..2993978) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0490 tRNA STMDT12_Ct0490 NC_016860.1 2993982 2994074 R tRNA-Ser complement(2993982..2994074) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0500 tRNA STMDT12_Ct0500 NC_016860.1 3164309 3164385 D tRNA-Met 3164309..3164385 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0510 tRNA STMDT12_Ct0510 NC_016860.1 3164415 3164491 D tRNA-Met 3164415..3164491 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0520 tRNA STMDT12_Ct0520 NC_016860.1 3220685 3220758 R tRNA-Gly complement(3220685..3220758) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0530 tRNA STMDT12_Ct0530 NC_016860.1 3299410 3299485 D tRNA-Phe 3299410..3299485 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0540 tRNA STMDT12_Ct0540 NC_016860.1 3402268 3402343 D tRNA-Met 3402268..3402343 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0550 tRNA STMDT12_Ct0550 NC_016860.1 3481767 3481843 R tRNA-Met complement(3481767..3481843) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0560 tRNA STMDT12_Ct0560 NC_016860.1 3485016 3485102 R tRNA-Leu complement(3485016..3485102) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0570 tRNA STMDT12_Ct0570 NC_016860.1 3590046 3590121 R tRNA-Thr complement(3590046..3590121) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0580 tRNA STMDT12_Ct0580 NC_016860.1 3593569 3593644 R tRNA-Glu complement(3593569..3593644) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0590 tRNA STMDT12_Ct0590 NC_016860.1 3843305 3843381 R tRNA-Pro complement(3843305..3843381) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0600 tRNA STMDT12_Ct0600 NC_016860.1 3971472 3971566 D tRNA-Sec 3971472..3971566 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0610 tRNA STMDT12_Ct0610 NC_016860.1 4206871 4206946 D tRNA-Glu 4206871..4206946 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0620 tRNA STMDT12_Ct0620 NC_016860.1 4210395 4210471 D tRNA-Asp 4210395..4210471 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0630 tRNA STMDT12_Ct0630 NC_016860.1 4210480 4210555 D tRNA-Trp 4210480..4210555 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0640 tRNA STMDT12_Ct0640 NC_016860.1 4246020 4246096 D tRNA-Arg 4246020..4246096 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0650 tRNA STMDT12_Ct0650 NC_016860.1 4246151 4246226 D tRNA-His 4246151..4246226 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0660 tRNA STMDT12_Ct0660 NC_016860.1 4246247 4246333 D tRNA-Leu 4246247..4246333 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0670 tRNA STMDT12_Ct0670 NC_016860.1 4246376 4246452 D tRNA-Pro 4246376..4246452 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0680 tRNA STMDT12_Ct0680 NC_016860.1 4302782 4302858 D tRNA-Ile 4302782..4302858 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0690 tRNA STMDT12_Ct0690 NC_016860.1 4302970 4303045 D tRNA-Ala 4302970..4303045 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0700 tRNA STMDT12_Ct0700 NC_016860.1 4457830 4457906 D tRNA-Ile 4457830..4457906 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0710 tRNA STMDT12_Ct0710 NC_016860.1 4458018 4458093 D tRNA-Ala 4458018..4458093 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0720 tRNA STMDT12_Ct0720 NC_016860.1 4465133 4465208 D tRNA-Thr 4465133..4465208 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0730 tRNA STMDT12_Ct0730 NC_016860.1 4465217 4465301 D tRNA-Tyr 4465217..4465301 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0740 tRNA STMDT12_Ct0740 NC_016860.1 4465418 4465492 D tRNA-Gly 4465418..4465492 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0750 tRNA STMDT12_Ct0750 NC_016860.1 4465499 4465574 D tRNA-Thr 4465499..4465574 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0760 tRNA STMDT12_Ct0760 NC_016860.1 4501389 4501464 D tRNA-Glu 4501389..4501464 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0770 tRNA STMDT12_Ct0770 NC_016860.1 4663973 4664048 R tRNA-Phe complement(4663973..4664048) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0780 tRNA STMDT12_Ct0780 NC_016860.1 4693814 4693889 D tRNA-Gly 4693814..4693889 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0790 tRNA STMDT12_Ct0790 NC_016860.1 4694046 4694121 D tRNA-Gly 4694046..4694121 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0800 tRNA STMDT12_Ct0800 NC_016860.1 4694278 4694353 D tRNA-Gly 4694278..4694353 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0810 tRNA STMDT12_Ct0810 NC_016860.1 4828393 4828477 D tRNA-Leu 4828393..4828477 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0820 tRNA STMDT12_Ct0820 NC_016860.1 4908011 4908097 R tRNA-Leu complement(4908011..4908097) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0830 tRNA STMDT12_Ct0830 NC_016860.1 4908129 4908215 R tRNA-Leu complement(4908129..4908215) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Ct0840 tRNA STMDT12_Ct0840 NC_016860.1 4908243 4908329 R tRNA-Leu complement(4908243..4908329) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0010 rRNA STMDT12_Cr0010 NC_016860.1 289180 290733 D 16S ribosomal RNA 289180..290733 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0020 rRNA STMDT12_Cr0020 NC_016860.1 291235 294325 D 23S ribosomal RNA 291235..294325 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0030 rRNA STMDT12_Cr0030 NC_016860.1 294522 294637 D 5S ribosomal RNA 294522..294637 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0040 rRNA STMDT12_Cr0040 NC_016860.1 2791845 2791960 R 5S ribosomal RNA complement(2791845..2791960) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0050 rRNA STMDT12_Cr0050 NC_016860.1 2792158 2795165 R 23S ribosomal RNA complement(join(2792158..2794547,2794608..2795165)) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0060 rRNA STMDT12_Cr0060 NC_016860.1 2795508 2797061 R 16S ribosomal RNA complement(2795508..2797061) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0070 rRNA STMDT12_Cr0070 NC_016860.1 3589891 3590006 R 5S ribosomal RNA complement(3589891..3590006) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0080 rRNA STMDT12_Cr0080 NC_016860.1 3590136 3590251 R 5S ribosomal RNA complement(3590136..3590251) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0090 rRNA STMDT12_Cr0090 NC_016860.1 3590345 3593336 R 23S ribosomal RNA complement(3590345..3593336) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0100 rRNA STMDT12_Cr0100 NC_016860.1 3593718 3595271 R 16S ribosomal RNA complement(3593718..3595271) Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0110 rRNA STMDT12_Cr0110 NC_016860.1 4205244 4206795 D 16S ribosomal RNA 4205244..4206795 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0120 rRNA STMDT12_Cr0120 NC_016860.1 4207140 4210131 D 23S ribosomal RNA 4207140..4210131 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0130 rRNA STMDT12_Cr0130 NC_016860.1 4210225 4210340 D 5S ribosomal RNA 4210225..4210340 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0140 rRNA STMDT12_Cr0140 NC_016860.1 4301171 4302722 D 16S ribosomal RNA 4301171..4302722 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0150 rRNA STMDT12_Cr0150 NC_016860.1 4303226 4306217 D 23S ribosomal RNA 4303226..4306217 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0160 rRNA STMDT12_Cr0160 NC_016860.1 4306414 4306529 D 5S ribosomal RNA 4306414..4306529 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0170 rRNA STMDT12_Cr0170 NC_016860.1 4456219 4457770 D 16S ribosomal RNA 4456219..4457770 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0180 rRNA STMDT12_Cr0180 NC_016860.1 4458274 4461265 D 23S ribosomal RNA 4458274..4461265 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0190 rRNA STMDT12_Cr0190 NC_016860.1 4461462 4461577 D 5S ribosomal RNA 4461462..4461577 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0200 rRNA STMDT12_Cr0200 NC_016860.1 4499762 4501315 D 16S ribosomal RNA 4499762..4501315 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0210 rRNA STMDT12_Cr0210 NC_016860.1 4501697 4504688 D 23S ribosomal RNA 4501697..4504688 Salmonella enterica subsp. enterica serovar Typhimurium str. STMDT12_Cr0220 rRNA STMDT12_Cr0220 NC_016860.1 4504885 4505000 D 5S ribosomal RNA 4504885..4505000 Salmonella enterica subsp. enterica serovar Typhimurium str.